Let the neck settle between adjustments. If you are not clear on these instructions, take your guitar to a qualified technician. Once you are sure your truss rod has been adjusted properly, you will want to adjust the action or string height to insure the best playability. String height is measured at the 12th fret. Using a steel ruler, measure the action on the top and bottom strings.
Most electric guitars provide individual string length adjustment for setting intonation.
Fine tuning this length insures that your guitar plays in tune all the way up and down the neck. Using an electronic tuner, tune your guitar to pitch. If the fretted note is sharper than the harmonic, increase the string length slightly until both notes register the same on your tuner. If the fretted note is flat compared to the harmonic shorten the string length slightly until both notes register the same on your tuner. Repeat the procedure on all strings until the harmonic and the fretted notes are the same.