Sure, the Federation doesn't use the violent tactics of the Borg, at least, not on individuals. But think about the amount of resources that have been given over to the hunting of the Maquis. I mean, the Federation supposedly thrives on diversity. The Federation just gives lip service to diversity. Differences are threatening.
Resistance is futile.
You will be assimilated. I also think that Jonathan Frakes has a great career ahead of him, considering the amount of movie experience he was working with on this film, and the good balancing act he pulled off with being a major character in the film and directing.