STAR etc runs under Linux. One area that might give you problems is filename conventions. It will be very interesting to see how star, running under wine, handles the file searches used in the Analyze Sequence command. Wine is an MS Windows emulator. So I am running the un-altered Windows executables under Linux.
Preliminary tests look good.
Interactive controls seems to work. I can click on the menu bars and see the drop down menus. I have not processed Mk III data yet but that is next.