Output is a file with the alignment of the sequences in a certain format. The name must not be more than 16 character. There can be any number of sequences in a file. See example.seq for an example. This can be applied to very similiar groups of sequences as well as to sequences where it is not clear if there is a relation- ship at all.
Output is an alignment-file again.
10 when few gaps are expected. In difficult cases maybe also try values in between. A fast and sensitive multiple sequence alignment algorithm. If you got the files as mail messages the subject header will contain the file name. The academic user is required to adhere to the following policies.