A new approach to protein fold recognition. A method to identify protein sequences that fold into a known three-dimensional structure. Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium. Protein fold recognition using sequence-derived predictions. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
Protein fold recognition by prediction-based threading.
Improved tools for biological sequence comparison. Basic local alignment search tool. Sequence space, folding and protein design. Binary patterning of polar and nonpolar amino acids in the sequences and structures of native proteins. Periodicity of polar and nonpolar amino acids is the major determinant of secondary structure in self-assembling oligomeric peptides.