Andreas Matern . A great place to find bits of useful code to add into your own programs. He also has a standalone Blast parser called BP2.pl as well as a newer parser called BPLite. Rob's Perl scripts are used for processing and analyzing DNA sequence information from the S. enteritidis genome. Parses a Blast output and produces a GIF image with a schematic representation of the resulting alignments.
Module is still experimental.
GD module requires Tom Boutell's graphic libgd library . Module examines an input sequence, reformats it in FastA format and determines whether it is a DNA or Protein sequence. TBOB also permits retrieval of sequences from the NCBI retrieve e-mail server, so that interesting sequences can be obtained for further analysis. This means that the speed of a bootsptrap analysis can be approximately improved in proportion to the number and power of CPUs available to the user. The search results can then be viewed using an HTML viewer.