The present interior of the church of San Miguel presents the best example of Mission carpentry and woodwork. The entire mission compound is now restored, including the original square and the buildings surrounding it. No state funds were, or are, available. All the work of reconstruction was the work of the Franciscans. Mission San Miguel is now enjoyed by thousands of tourists each year from all over the world.
Many forth graders come in buses to visit the mission.
Of recent years, Mission San Miguel has become well known for its famous cactus garden. Cactus plants of all shapes and sizes surround the whole mission area. There are approximately 34 different varieties of cactus. At the present time, the Mission San Miguel is used as a parish church, Novitiate, and a retreat house where people of all faiths enjoy its peaceful atmosphere.