Traveling with a teenager now, we especially like to get separate bedrooms, if at all possible. Suites are ideal. Breakfasts should be substantial when the day ahead is full of outdoor activities. Here are some of the places we've stayed and enjoyed, either because they satisfied our needs so well or because of something else special about them. I hope you find this list useful in locating that special inn that will work for your family vacation.
Innkeepers have a good supply of binoculars on hand.
10 minute drive from downtown Juneau. I'm not sure if this is always available. This is a good base for visiting Glacier Bay National Park. Wood stoves and kitchens. They have a whole range of choices from small cabins to 2 bedroom chalets.