Although timber sales have decreased by a factor of three in the last five years, logging still degrades the environment. Entry into roadless areas still continues, although at a reduced rate compared to a decade ago. Roads and entry into roadless areas threaten the health of the forest through sedimentation and ease of access for human activity. New road building has been brought to a virtual halt in this forest, but the extensive road network remains a problem, particularly because the Forest Service neither adequately maintains them nor obliterates them. Grazing, which destroys the native grass lands and riparian areas, is a significant issue in the Salmon-Challis National Forest.
Mining claims continue to be explored resulting in numerous roads and activity.
The potential for large mines threatens a future of major water quality degradation. This threat has significantly increased due to well funded industry back associations and motorized clubs. ORV access has become as contentious as the timber issues. Fire policy has had a long term significant impact on the Forest. The 50 year policy of fighting fires has resulted in significant changes to the ecosystem and the distribution of tree species and other species.