The mean number of used sites over all pairwise comparisons is given in the tree window. It can also read tree files, for elaborate usages. In this file, information about site sets, species groups and stored trees can be read. It can also write tree files and distance files. Reconstructed trees can also be saved into tree files.
File format is the standard parenthesed format.
Distance between Rat and Mouse is 0.03, distance between Chicken and Horse is 0.27. For these functionalities, an alignment editor such as seaview is required. Nucleotidic or proteic files are allowed. These methods are sequence input order-dependant. Up to 10 equally best trees are shown.