No linkage between most loci, so cannot create haplotypes, just genotypes for each locus, and allele frequencies for each locus for each population. Allozyme Genetic Distances Allozyme genetic distances are calculated by summing the squared differences of the allele frequencies between two populations. For multiple loci, we take the average of the D's for all the loci to get an overall genetic distance. Counting shared and unshared cuts May not always know where the cuts occur, so may only be able to count bands. If you know the sequence of one individual, you can infer where the cuts may have occurred in others.
Double digests can help.
Nucleotide diversity is the average proportion of nt differences between all possible pairs of sequences in the sample. 6 nt rec. 96 mono nts. Uses for Genetic Polymorphisms Population and individual identification or identification of gene flow. Estimation of evolutionary and demographic events.