In the summary below, the capitalized letters in the qualifier names are the letters that you must type in order to use the parameter. The parameters and switches listed below can be set from the command line. When the beginning position is set from the command line, Assemble ignores beginning positions specified for individual sequences in a list file. When the ending position is set from the command line, Assemble ignores ending positions specified for sequences in a list file. All sequence segments specified in the list file are assembled into a single output sequence file.
List writes a list file with the names of the output sequence files.
If you don't specify a filename, then Assemble makes one up using Assemble for the filename and .List for the filename extension. This program normally monitors its progress on your screen. However, when you use the -Default option to suppress all program interaction, you also suppress the monitor. You can turn it back on with this option. If your program is running in batch, the monitor will appear in the log file.