Indexing Lotus Notes Domino generated sites requires several additional options to be added to the configuration files. Moreover, Domino can generate multiple views for same content. Alkaline includes an expansion feature that will transform any page with collapsed elements into a request to it's expanded form. Y to the configuration. The Nsf option will also enable lookup of full duplicates, that is pages that have different urls but the same content.
Domino generates urls in all possible forms and shapes, often leading to the same content.
Domino is not case-sensitive for urls, but all UNIX servers are.