Modeling at Pacific University Molecular Modeling Pacific University integrates computer modeling throughout its chemistry curriculum. Starting in the first year students in general chemistry use modeling to help understand the three dimensional characteristics of molecules and the energy relationships. More advanced problems are tackled in our organic, inorganic and physical chemistry courses. Most of these are located in our Stain Computer Laboratory and are available to students most of the day. At Pacific, we are especially interested in modeling chemiscal changes.
Chemical reactions are the heart of chemistry.
To truly understand a reaction, the mechanism or reaction pathway must understood. Transition states are the major focus of the activated complex theory and lead to rates of reaction. The thermodynamic aspects of transition states encompass activation energies and the equilibruim between reactants and the activated complex. So, modeling intermediates and transition states lead to a greater understanding of how and why reactions occur and better ways to prevent or encourage reactions.