It is normal for a eulogy to be given and a number of different Psalms are included in the funeral service. Each rabbi will choose the readings that she or he feels is appropriate for the particular service. The funeral service will conclude with the traditional shovelling of earth onto the coffin, or in accordance with family wishes, flowers may be dropped into the grave. This may be an organisation with which the deceased was actively involved or, perhaps a group that deals with the illness from which the person died. It would also be appropriate to inscribe the name of the deceased on the synagogue memorial board, to honour the memory of the deceased.
Jewish tradition frowns upon autopsies.
When the civil authorities require an autopsy to determine the cause of death, their legal requirements supersede religious practice. All we can do is to ask them to act as quickly as possible and to disturb the deceased as little as possible. Progressive Judaism also permits an autopsy when the knowledge to be gained would be of significant psychological comfort to the family or when there is a substantial possibility of gaining new medical knowledge. In this situation, the counsel of your rabbi is extremely important. The answer is yes, books can be buried with the deceased.