Does not always find the most likely tree. B. Exhaustive maximum likelihood - Finding the maximum likelihhood by computing the likelihoods of all possible trees. 5 - Questionable 9. Miscellaneous A. Always remove columns containing gaps from alignments before analyzing. In computing distances correct for back mutations.
Courier is used to indicate commands and command options.
Courier italics are used to indicate command parameters, for example, filenames. Courier bold is used to indicate commands that are not displayed. Courier bold italics are used to indicate computer-generated output. Helvetica is used to indicate menu items. Option A sends the tree diagram to a figure file entitled pileup.figure .