Output files summarize the results for each protocol criteria. This plot is Figure 4. The file is created automatically by the ribbon-model command in the previous examples. The user adds columns to this file for custom color-coding. Hot spots in the structure should be obvious.
Dark colors indicate problems here.
A residue may be picked to display information. Residue error in preliminary Alr1 refinement. All files have a simple format. Data from other programs may be reformatted to generate the lists of spheres, cylinders, or triangles for display. Ribbons can output primitives suitable for input into several ray-tracing packages.