Run Compare at a Window size of 32 while increasing the stringency. L76749 Gorilla gorilla graueri L76773 Pongo pygmaeus AF035466 Balaenoptera acutorostrata Y17160 Rhamphochromis sp. Equus caballus AF064632 Use the pileup program to align all nine of these sequences. At the bottom of the alignment is an image of the Dendrogram used for the analysis. Which was added second.
Horizontal distance is meaningless.