Poor installation can cause misalignment. Be sure there is a tightly caulked seal around the edge of the storm windows. Leaks can hurt the performance of storm windows a lot. An anodized or baked enamel finish is better. Quality of construction affects the strength and performance of storm windows.
Corners are a good place to check construction.
They should be strong and air tight. Normally overlapped corner joints are better than mitered. If you can see through the joints, they will leak air. Compare several types before deciding. The quality of locks and catches has a direct effect on durability and is a good indicator of overall construction quality.