Sonnhammer E.L., Kahn D. Modular arrangement of proteins as inferred from analysis of homology. Nucleic Acids Res. Click each Motif library database name colomun to see detailed explanation. Align a protein sequnce with a profile given by the users. The procedure is similar to the one to search against the motif library database, however, you should provide a name of the file containing profile matrix instead of the database names.
Additional explanations are available.
99063727 Search with a profile against protein sequence databases Given a profile, protein sequence databases on GenomeNet service are retrieved to find out the protein families that have the same motif. This allows you to search protein sequence libraries with your patterns. The pattern string must be terminated with . Additional explanations are shown. How to set up the RasMol Program RasMol is a molecular graphics program intended for the visualisation of proteins, nucleic acids and small molecules.