Normal collision check. So if any other residue matches the identical score then a collision has occurred. If another residue has a greater than or equal to matching score and these do not match then a collision has occurred. If any of these give a top score for matching or identical scores then a collision has occured. Output file format An image of the alignment is displayed.
Data files Prettyplot uses a comparison matrix file to calculate similarity to the consensus.
Users can provide their own data files in their own directories. Diagnostic Error Messages None. It exits with status 0 unless an error is reported. Displays information on the currently available databases showfeat Show features of a sequence showseq Display a sequence with features, translation etc textsearch Search sequence documentation text. Gert Vriend added the star marking.