All commands are macros so you can replace them with your own ones. Performs an interaction energy analysis for each residue along the chain. The formula is similar to the A. Jones one, but not the same. The Fcalc and 2Fobs - Fcalc map are compared. They are scaled to each other by scaling Fcalc to Fobs in reciprocal space.
Density is calulated at each nondummy atom position and then analysed on a residue basis.
The structure factor calculation is based on a kicked model coordinates. Use your own macro if you want to change the gliding window size and its safety border. Default window is 20 residues and the border is 5. At the bottom the overall deviations are shown. At the bottom the overall deviations are shown.