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Amino acids are the basic protein building blocks.
They are needed to make the brain's neurotransmitters, the liver and intestinal enzymes, and all the other enzyme systems of the different cells. Because they are so basic, they are not considered foreign substances by the body and, hence will not trigger an allergic reaction. Human intestinal digestion of plant and animal protein is supposed to break down the protein molecules into these basic, nonallergic amino acid units for absorption into the system where the liver puts them together as human protein. That process may not be complete, therefore, reactions may occur to these incompletely broken down proteins. The body's immune system may think it is a foreign invader.