Double-clicking on an entry opens the corresponding edit window. As you can see above, the sequence entry for the first file has been opened. Double-clicking on the sequence name in the list window opens up a notepad where you can maintain info about the file. You can for example import an E-mail into the notepad, cut out a sequence in the mail and paste it into the sequence editor. One very important concept in RNAdraw is right-button menus.
All windows have an associated right-button menu, so does every entry in the sequence list.
Extensive online help is also available. In this way one can introduce new experimenatlly derived energies, rule out certain substructural motifs and monitor the effects of energy parameter changes on subsequently calculated structures. Under Windows 95 and Windows NT, calculations can be done minimized in the background. Above you see two structures in their edit windows. As you can see, you can adjust which information that will be shown, such as bases, labels, basepairs etc.