All output ORF sequences are written to the specified outut file. The description of the output ORF sequence is constructed from the description of the input sequence with the start and end positions of the ORF prepended. The unique number appended to the name is simply used to create new unique sequence names, it does not imply any further information indicating any order, positioning or sense-strand of the ORFs. If the ORF has been found in the reverse sense, then the start position will be smaller than the end position. The numbering uses the forward-sense positions, but read in the reverse sense.
Data files None.
Diagnostic Error Messages None. It always exits with status 0. Known bugs None. This program is intended to be used by everyone and everything, from naive users to embedded scripts.