If you have a 'simple frequency matrix'you should use the program profit to scan sequences. Here is a sample session with prophet.
Data files None.
Warnings prophet does NOT use the 'simple frequency matrices' produced by prophecy . If you have a 'simple frequency matrix'you should use the program profit to scan sequences. It exists with a status of 0. Known bugs None. This program is intended to be used by everyone and everything, from naive users to embedded scripts.