The larger this value is, the smoother the plot will be. File containing a sequence alignment Readable sequences Required -winsize Number of columns to average alignment quality over. The larger this value is, the smoother the plot will be. A set of gapped, aligned sequences. A graph of the quality of the alignment is plotted.
Data files It reads in the specified similarity matrix.
Exxx.dat Users can provide their own data files in their own directories. Diagnostic Error Messages prog . It always exits with status 0. Known bugs None. This program is intended to be used by everyone and everything, from naive users to embedded scripts.