The command line processing commands are designed to be used with the minimum number of additional parameters in the command line. If the program is being run in interactive or terminal modes and an error is detected during the execution of one of the command line processing options, then in some cases the user may be presented with the option of continuing the processing with the next pack or plate in spite of the current error. In interactive mode progress bars are displayed during some of the processing stages and in interactive or terminal mode, output messages are used to indicate the steps being carried out where appropriate. Where required the pack and plate numbers may be reset using the pack or plate commands followed by the required pack or plate number respectively.
All commands are case insensitive.
This command allows for an initial determination of spot size parameters for use in the processing of the data. The method involves searching an image for spots and determining suitable spot size parameters from these spots bearing in mind that Laue images may well contain overlapping spots. The basic method and parameters required are described in Chapter 8 for the equivalent interactive command. This allows for the refinement of the crystal orientation and related parameters using the automatic refinement protocol as described in Appendix 12 . The default is to refine the cell parameters.