Document ID: EPA-HQ-OW-2019-0675-0026
Agency: epa
Document Type: Supporting & Related Material
Title: 
Posted Date: 2020-05-22T04:00Z

Model notes
April 8, 2020

1. Download all *.csv.txt and *.R.txt files and remove the .txt designation from the file name.

2. Load the following data files into the workspace:
   - dat.merge.all.csv:	   NLA data 
   - qa.biov.csv: 	   QA data for NLA phytoplankton biovolume
   - modat0.csv:	   Missouri DO data

3. Run stressor-response models by sourcing different R scripts:
   - chl.zoop.mod.R:	 Zooplankton model
   - chl.mc.model.R:	 Microcystin model
   - chl.hypoxia.mod.R:	 Hypoxia model (run tempmod.R before this one)
   - tempmod.R		 Models for air and lake water temperature
   - tp.chl.mod.R:	 TP-Chl model (run tempmod.R before this one)
   - tn.chl.mod.R: 	 TN-Chl model (tun tp.chl.mod.R before this
   one)

4. Other scripts (binv.R, logtick.exp.R) should be saved in the
working directory and are run by the other scripts.

5. Model outputs are saved in the working directory or in the current
R workspace.