cometadata/test-preprints-extracted-funding huggingface dataset:
Acknowledgments: This work was supported by grants from the National Key R&amp;D Program of China (2017YFA0103302), the National Natural Science Foundation of China (82070257, 81770240, 81570222, 81670422, 81873517), the Guangdong Natural Science Funds for Distinguished Young Scholar (2014A030306011), the Guangdong Science and Technology Planning Project (2014A050503043), the New Star of Pearl River on Science and Technology of Guangzhou (2014J2200002), the Top Young Talents of Guangdong Province Special Support Program (87315007), the Young Taishan Scholars Program of Shandong Province (tsqn20161045), and the Research Grant of Key Laboratory of Regenerative Medicine, Ministry of Education, Jinan University (ZSYX-M-2019-00009, ZSYXM202004, and ZSYXM202104), China.
This study was supported by the Spanish Ministry of Economy and Competitiveness, FEDER Grants (RTI2018-097110-B-C21 and RTI2018-096847-B-C22), Junta de Andalucía-FEDER Grants (RTI2018-096847-B-C21 and P20-00938) and the European Union's Horizon 2020 research and innovation programme under grant agreement No 81792 (AQUA-FAANG). We thank Geneaqua SL for their participation and financial support on sequencing. We acknowledge the bioinformatic support of the Centro de Supercomputación de Galicia (CESGA).
This work was partially funded by ANR, as part of the project RAMbo-V (ANR-21-CE35-0008). Genome 391 sequencing was performed by the Genome Transcriptome Facility of Bordeaux (https://pgtb.cgfb.u392 bordeaux.fr, Grants from Investissements d'avenir, Convention attributive d'aide EquipEx Xyloforest 393 ANR-10-EQPX-16-01). 394
We would like to thank Mark Kelly for advice and training on biophysical experiments; David Lambright for generously providing kinetic analysis software; Frank DiMaio, Hahnbeom Park, and Brandon Frenz for advice on Rosetta ΔΔG calculations; members of the Kortemme lab for discussion; and Guy Riddihough of Life Science Editors for helpful comments and edits on the manuscript. This work was supported by a grant from the National Institutes of Health (R01GM117189) to T.K. and D.N.A.B.; C.J.P.M. is a UCSF Discovery Fellow; T.K. is a Chan Zuckerberg Biohub Investigator.
ALJ and IP were funded by the First Byte Funding Scheme from the Centre for Data Science at Queensland University 563 of Technology. ALJ was also funded by a Fonds de recherche du Quebec - Sante International Postdoctoral 564 Fellowship, Centre for Applied Mathematics in Biosciences and Medicine (CAMBAM). Funding from the Illawarra 565 Cancer Carers and the PanCare Foundation (APP1165978, administered by Cancer Australia) awarded to KLV is also 566 gratefully acknowledged. PSK was supported by the Australian Research Council Discovery Project (DP18010512). 567
We thank Brigitte Jockusch and Sabine Buchmeier for fascin antibody. This work was supported in part by the Deutsche Forschungsgemeinschaft (individual grants FA330/9-2 and FA330/13-1 to J.F. and Research Training Group GRK2223/1 to K.R.), and by funding from the Helmholtz Society (to K.R.). GS was supported by the Associazione Italiana per la Ricerca sul Cancro (AIRC IG#18621 and
S.L. thanks Tsinghua University for providing a Start-up fund, the Tsinghua University Branch 489 of China National Center for Protein Sciences (Beijing) for the cryo-EM facility and the 490 computational facility support, and Dr. Fan Yang, Liao Zhang for technical support. We thank 491 Dr. Jianlin Lei in the cryo-EM Facility, Dr. Lingpeng Cheng in the Cryo-EM Structural 492 Analysis Facility, and Dr. Haiteng Deng in the Proteinomics Facility at Technology Center for 493 Protein Sciences, Tsinghua University, for cryo-EM data collection, structural analysis and 494 protein MS; Haibo Wu, Changzhong Jin and Zhigang Wu in the State Key Laboratory for 495 Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang 496 University School of Medicine, for virus fixation and biosafety validation. We thank the 497 computational facility support on the cluster of Bio-Computing Platform (Tsinghua University 498 Branch of China National Center for Protein Sciences Beijing). We are in debt to Dr. Hongwei 499 Wang and Dr. Nieng Yan for providing critical advices. Funding: This work was supported in 500 part from Tsinghua University Spring Breeze Fund #2021Z99CFZ004 (S.L.), National Natural 501 Science Foundation of China #32171195 (S.L.), Zhejiang Provincial Key Research and 502 Development Program #2021C03043 (H.Y.), and National Key Research and Development 503 Program in China #2021YFC2301200 (H.Y.). 504
We thank Paul Greengard for his unwavering support of the early stages of this project, until his sudden passing. We thank C. Zhao, C. Lai and the whole Rockefeller University genomics resource center team for all the sequencing. We thank T. Carroll and the Rockefeller University Bioinformatics facility for their help with data analysis. P.R-R. was supported by the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie
grant agreement No 799638. P.R-R and C.T. were supported by Alzheimerfonden and Margaretha af Ugglas Stiftelse. P.R-R., M.F. and J.P.R. were supported by the Fisher Center for Alzheimer's Disease Research. J.P.R. was supported by Cure Alzheimer's Fund. This study was supported by the National Institute on aging of the NIH (awards RF1 AG054564 and RF1 AG047779 to J.P.R.).
This work was supported by the following grants from the National Institutes of Health: R01 DA015214 (RCP) and T32 DA28874 (SESJ). The authors declare no conflicts of interest. SESJ and RCP designed the study; SESJ, PJH, MCK, AST, SM, SJW, MS, and AC performed experiments; SESJ, and RCP analyzed data; SESJ and RCP wrote the manuscript; all authors reviewed and approved the manuscript. The authors thank Riley Merkel for her technical contributions.
This work was supported by the Knut and Alice Wallenberg Foundation [to S.W.]; the Swedish Research Council [VR-MH 2018-0278 to S.W., VR-NT 2017-05235 to E.C.]; the Kempe foundations [SMK-1632 to E.C.]; the Wenner-Gren Foundations [to S.W. and M.D.]; the HORIZON 2020 Framework Programme-H2020 Marie Skłodowska-Curie Actions [751474 to M.D.]; the Swedish Foundation for Strategic Research [RIF14-0081 to M.D.L.]; and the Finnish Academy [332458 to S.G., to J.L.O.P.].
- M.P.D. and M.C.J), the Bill and Melinda Gates Foundation (OPP1217652), and the NSF 1 - (CBET-1159581 and CBET-1264701 to M.P.D. and CBET-1936823 to M.P.D and M.C.J.). E.J.B. was supported by a training grant from the NIH/NIGMS Chemical Biology Interface Training Grant (T32GM138826) and an NSF Graduate Research Fellowship (DGE-2139899). J.M.H. and K.F.W were supported by NDSEG Fellowships.
- We thank Markus Aebi for providing strain CLM24 and hR6 serum used in this work. We 28 also thank Peter Schweitzer and the BRC Genomics Facility (RRID:SCR_021727) at the 29 - Cornell Institute of Biotechnology for sequencing experiments. This work was supported 30 - by the Defense Threat Reduction Agency (HDTRA1-15-10052 and HDTRA1-20-10004 to 31
BG's work on better use of data in healthcare more broadly is currently funded in part by: the Wellcome Trust, NIHR Oxford Biomedical Research Centre, NIHR Applied Research Collaboration Oxford and Thames Valley, the Mohn-Westlake Foundation; all DataLab staff are supported by BG's grants on this work. LS reports grants from Wellcome, MRC, NIHR, UKRI, British Council, GSK, British Heart Foundation, and Diabetes UK outside this work. AS is employed by LSHTM on a fellowship sponsored by GSK. KB holds a Wellcome Senior Research Fellowship (220283/Z/20/Z). BMK is also employed by NHS England working on medicines policy and clinical lead for primary care medicines data.
This work was supported by the National Key R&amp;D Program of China [grant number 2021YFA1302500]; the Natural Science Foundation of P. R. China [grant numbers 12171494, 11931019, 11775314]; the KeyArea Research and Development Program of Guangzhou, P. R. China [grant numbers 2019B110233002, 202007030004]; and the Guangdong Basic and Applied Basic Research Foundation [grant number 2022A1515011540].
Brookhaven National Laboratory is supported by US Department of Energy (DoE), Office of Science User Facility operated for the DoE by Brookhaven National Laboratory under Contract SC0012704. DLG and AFI acknowledge funding from Khalifa University 2014-KUIRF-L1 grant. We thank Prof. R. V. Law from Imperial College London for generous access to labs and NMR facilities. We also thank S. Rashid and Y. Abdel-Raouf for technical assistance in the early stages of this project. KIH and AFI acknowledge support from Colgate University. AFI acknowledges hospitality of BNL and Cornell University for part of the time worked on this project.
- 27 This work received funding from the BMBF through the ERASysAPP project SysVirDrug (grant 28 031A602A). LK received funding from the DFG (grant number KA 2989/13-1). C.D. was supported by a - 29 stipend of the DKFZ International PhD Program. Portions of this work were done under the auspices of - 30 the U.S. Department of Energy under contract 89233218CNA000001 and supported by NIH grants R01-
This work was supported by Grant PID2021-124297NB-C33 funded by MCIN/AEI/ 10.13039/501100011033 and, as appropriate, by 'ERDF A way of making Europe', by the 'European Union' or by the 'European Union NextGenerationEU/PRTR' and by the 'Severo Ochoa' Program for Centers of Excellence in R&amp;D (CEX2019-000917-S) awarded to ICMAB. We thank the Spanish national supercomputing network (BSC-RES) for the award of computer time at the Minotauro supercomputer. M Sahihi is supported by the European Union Horizon 2020 research and innovation programme under Marie Sklodowska-Curie Action Individual Fellowship Grant Agreement No. 101026158.
This work is supported by NIHR grant number [NIHR COV-LT2-0043]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. DW is supported by an NIHR Advanced Fellowship. MG is part-funded by the Applied Research Collaboration North West Coast (ARC NWC). The views and opinions expressed in this protocol are those of the authors and do not necessarily reflect those of the NIHR or the Department of Health and Social Care.
We would like to thank Dr. Y. Rao, Dr. R. Lehmann, Dr. A. Renault, and Dr. T. Awasaki for kindly providing us plasmids and flies, the Bloomington Stock Center and the Vienna Drosophila RNAi Center for fly stocks, and the Developmental Studies Hybridoma Bank, created by the NICHD of the NIH and maintained at The University of Iowa, Department of Biology, Iowa City, IA 52242 for select monoclonal antibodies. We thank A. Forbes and T. Perry for excellent zebrafish care, and colleagues from the Freeman and Monk labs for helpful comments and discussion on the manuscript. This work was supported by R37NS053538 to M.R.F., R21NS115437 to K.R.M., and R01NS124146 to M.R.F. and K.R.M.
We would like to thank Andrew Kern for comments on the manuscript, Nick Matthew for his 618 work and guidance on GANs prior to the development of this project, as well as other members 619 of our lab: Logan Whitehouse, Amjad Dabi, Becca Love, and Anton Suvrov for their advice and 620 assistance. WWB was supported by NIH grant HG010774, and DRS was supported by NIH 621 grants HG010774 and GM138286. 622
The original study was supported by the Sandler Program for Asthma Research; ES011185 from the National Institute of Environmental Health Sciences; and MO1-RR-30 from the National Center for Research Resources, Clinical Research Centers Program, National Institutes of Health. The current analysis was supported in part by the Divisions of Intramural Research, National Institute of Allergy and Infectious Diseases project AI001150 (A.P.R., J.M.J, C.M.C, J.G.N., M.P. F., H.C.A), National Heart, Lung, and Blood Institute (NHLBI) project HL006196 (A.P.R., H.C.A.). This work was also funded in part by NHLBI grants NIH R01-HL107590 and R01HL153641 (L.G.Q.) and the Durham VA Medical Center Research Service (J.B.W.). The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIAID or NHLBI. The content of this publication does not necessarily reflect the view or policy of the Department of Health and Human Services, nor does mention of trade names, commercial products or organizations imply endorsement by the government. The interpretation and reporting of these data are the responsibility of the author(s) and in no way should be seen as an official policy or interpretation of the U.S. government.
We thank Nikolai Lorenzen and Gaetano Invernizzi (Novo Nosdisk A/S) for their feedback. We thank Bjarne Gram Hansen, Birgitte Friedrichsen and Anne Lee Andersen (Novo Nordisk A/S) for their efforts in organizing plasmid generation and antibody expressions. The research leading to these results has received funding from a Royall Scholarschip (N.A.E.), AstraZeneca (M.O.), the European Union's 279 Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant MicroREvolution 280 (agreement no. 101023060; T.S.), the Newman Foundation (T.S., T.P.J.K.), Global Research Technologies Novo Nordisk A/S (H.A, T.P.J.K.), the Harding Distinguished Postgraduate Scholar Programme (T.J.W.), a Krishnan-Ang Studentship (R.Q.), Trinity College (Cambridge Honorary Trinity-Henry Barlow Scholarship; R.Q.), the China Scholarship Council (H. Z.), a Royal Society University Research Fellowship (P.S., URF\R1\201461), Wellcome Trust Collaborative 283 Award 203249/Z/16/Z (T.P.J.K.) and the European Research Council under the European Union's 285 Seventh Framework Programme through the ERC grants PhysProt (T.P.J.K., agreement no. 337969; 286)
Acknowledgements: This study used data from the VA COVID-19 Shared Data Resource. This research was funded by the United States Department of Veterans Affairs (ZAA). The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript. The contents do not represent the views of the US Department of Veterans Affairs or the US government.
Funding/Support: This research was funded by the United States Department of Veterans Affairs (for ZAA).
The Cricket system was initially prototyped and tested by Voxa with the Allen Institute for Brain 296 Science 12 . We thank R. Clay Reid, Daniel J. Bumbarger, Wenjing Yin, Derrick Brittain, Marc 297 Takeno, Nuno Macarico da Costa, David Hildebrand for advice on microscopy and serial 298 sectioning setup; Stephan Y. Thiberge for help in the planning and construction of the TEM 299 facility; Lawrence Own and Teddy DeRego for their development and support in GridStage and 300 Cricket hardware and software; Wei-Chung Allen Lee and Jasper Phelps for advice on image 301 stitching; John Price for modification of ATUMtome. This work was supported by the NIH grants 302 1S10OD023602-01A1 and 1U19NS104648 and the Simons Collaboration on the Global Brain. 303 The authors acknowledge the use of Princeton's Imaging and Analysis Center, which is partially 304 supported through the Princeton Center for Complex Materials (PCCM), a National Science 305 Foundation (NSF)-MRSEC program (DMR-2011750). 306
We thank Marceline Côté (University of Ottawa) and Amit Sharma (Ohio State University) for generously providing spike VOC plasmids and the Laboratoire de santé publique du Québec for the stocks of live SARSCoV-2 viruses. We also would like to thank the participants and the study staff of the Hospitalized or Ambulatory Adults with Respiratory Viral Infections (HAARVI) study. We also thank David Veesler (University of Washington) for providing Delta spike trimer to use as bait to capture Spike-specific B-cells. The SARS-CoV-2 S 6P expression vector was a gift from Jason McLellan (Addgene plasmid # 154754). This work has been supported by grant AI 38709 to J.O. T.N.S. was supported by NIH/NIAID K99AI166250. The work of J.D.B. was supported by NIH/NIAID grant R01AI141707 and the Howard Hughes Medical Institute. The Finzi lab was supported by the Canadian Institutes of Health Research (CIHR) CIHR grant nos. 352417 and 177958 and by an Exceptional Fund COVID-19 from the Canada Foundation for Innovation (CFI) #41027 to A.F. A.F. is the recipient of a Canada Research Chair on Retroviral Entry # RCHS0235 950-232424. K.K.L. was supported by grant R01AI165808. J.G., M.L., C.I.D, V.C., F.R., M.S.K. were all researchers at Fred Hutch Cancer Center in the Overbaugh group. K.N.L and J.T.C. are researchers at the University Washington with the Lee group. S.D. is a researcher in the Finzi group at the Centre de Recherche du CHUM.
We thank Dr. Marjori Matzke for her comments on this manuscript. TS thanks Dr. Soichi Inagaki for the ddc and cmt23 mutant seeds. This work was supported by grants from the Human Frontier Science Program (RGP0025/2021 to TK), CREST, Japan (JPMJCR15O1 to TK), the Japan Society for the Promotion of Science (JSPS) KAKENHI Grants (19H00995 and 21H04977 to TK, JP18K06348 to TS), and the National Institute of Genetics NIG-JOINT (32A2018 and 73A2019) to TS and YT. Computations for methylome analysis were performed on the NIG supercomputer at the ROIS National Institute of Genetics.
Funding: This work was supported by the Spanish MCIN project Bream-AquaINTECH (RTI2018-094128-B-I00, AEI/FEDER, UE) to JP-S and JC-G. This study also forms part of the ThinkInAzul programme and was supported by MCINN with funding from European Union NextGenerationEU (PRTR-C17.I1) and by Generalitat Valenciana (THINKINAZUL/2021/024) to JP-S. BS was supported by a pre-doctoral research fellowship from Industrial Doctorate of MINECO (DI-17-09134). FN-C was supported by a research contract from the EU H2020 Research Innovation Program under grant agreement no. 818367 (AquaIMPACT). FM was funded by a research contract from the EU H2020 Research Innovation Program under grant agreement no. 871108 (AQUAEXCEL3.0). MCP was funded by a Ramón y Cajal Postdoctoral Research Fellowship (RYC2018-024049-I co-funded by AEI, European Social Fund (ESF) and ACOND/2022 Generalitat Valenciana).
Funding: This work was supported by a grant from WHO. ABH acknowledges support from an Australian National Health and Medical Research Council Investigator Grant and Imperial College Research Fellowship. PW is supported by an Imperial College Research Fellowship. OJW is supported by a Schmidt Science Fellowship in partnership with the Rhodes Trust. GC and ACG acknowledge support from The Wellcome Trust. ABH, PD, PW, GC, GB, SLW, NMF and ACG acknowledge funding from the MRC Centre for Global Infectious Disease Analysis (reference MR/R015600/1), funded by the UK Medical Research Council (MRC) and part of the EDCTP2 programme supported by the European Union. This work was additionally supported by the NIHR Health Protection Unit for Modelling and Health Economics (NMF: [NIHR200908]); and philanthropic funding from Community Jameel (PD, NMF).
We acknowledge the Research IT group at Iowa State University ( http://researchit.las. iastate.edu ) for providing servers and IT support. We would like to thank Dorman lab and Tuteja lab members for their discussion and support. This work was supported in part by the Eunice Kennedy Shriver National Institute of Child Health &amp; Human Development of the National Institutes of Health under award number R01HD096083 (to G Tuteja). G Tuteja is Pew Scholar in the Biomedical Sciences, supported by The Pew Charitable Trusts. This work was supported in part by the United States Department of Agriculture (USDA) National Institute of Food and Agriculture (NIFA) Hatch project IOW03717. The findings and conclusions in this publication are those of the author(s) and should not be construed to represent any official USDA or U.S. Government determination or policy.
This work was supported by the German Federal Ministry of Education and Research (BMBF) 318 (EMUNE/031L0293 and FitMultiCell/031L0159) and the German Research Foundation (DFG) 319 under Germany's Excellence Strategy (EXC 2047 390873048 and EXC 2151 390685813). Y. Sch¨ alte 320 acknowledges financial support by the Joachim Herz Stiftung. 321
- Funding. SQS received funding from the International Max Planck Research School for Quantitative Behaviour, 337 Ecology and Evolution. LMA was funded by a Max Planck Research Group Leader Fellowship. SQS and LMA 338 were supported by the Centre for the Advanced Study of Collective Behaviour (CASCB), funded by the Deutsche 339 Forschungsgemeinschaft (DFG) under Germany's Excellence Strategy (EXC 2117-422037984). JCS was sup340 - ported by a research project from the Ministry of Science and Innovation (CGL-2020 PID2020-114907GB-C21). 341 - Acknowledgements. We would like to thank Zoo Barcelona and Josep M. Alonso Farre for granting us access to 342 the zoo grounds and showing us around. We would like to thank Andres Manzanilla, Gustavo Alarc˙ on-Nieto, Mireia 343 Fuertes Clavero, Alba Ortega-Segalerva and Jose G. Carrillo-Ortiz for all their effort during fieldwork. Finally, we 344 would like to thank Francesca S. E. Dawson Pell, Daniel Redhead, Jack W. Bradbury, Susannah Buhrman-Deever, 345 Grace Smith-Vidaurre, Timothy F. Wright, Roger Mundry, Mirjam Kn¨ ornschild and Elizabeth Hobson for valuable 346 advice during the early stages of this project. 347
We thank Pieter Huycke, Liyu Xia, Judith Goris, Meng Liu, Qi Chen, Dahlia Mukherjee, Michael X. Cohen and Thomas P. Hein for sharing their datasets either via open science framework or via direct communication with us. Additionally, we thank Juliet Davidow to share her stimuli with us to use for the collection of the online additional dataset. PV and TV were both supported by the Research Foundation Flanders (FWO) / Fonds Nationale de la Reserche Scientifique EOS grant G0F3818N. Additionally, PV was supported by grant 1102519N from Research Foundation Flanders. We thank Irene Cogliati-Dezza and Thomas Colin for their comments on an earlier version of the paper.
Microscopy was performed in the ACRF Telomere Analysis Center, supported by the Australian Cancer Research Foundation and the Ian Potter Foundation. A.P.S. is a Cancer Institute NSW fellow. This work was funded by the National Health and Medical Research Council of Australia (1162886 to A.J.C and H.A.P) and Cancer Institute NSW (ECF171269 to A.P.S.) and by the University of Campania Luigi Vanvitelli under grant VALERE: Vanvitelli
This work was funded by the Charles University PRIMUS Grant PRIMUS/20/SCI/015 (C.A., H.A. and S.K.). H. A. was also funded by the Charles University grant UNCE/SCI/023. We thank Prof. Luke H. Chao for bringing to our attention the challenges of mitochondrial membrane morphology and Dr. Piotr Jurkiewicz for discussing CL biophysics with us.
This study was supported by NSF Award Number 2118253 to D.R.K. and O.A.Z. We wish to thank Bastiaan Bargmann for sharing seed stocks. KL and JŠ were funded by the Swedish Research Council (VR 2018-04235), the Knut and Alice Wallenberg Foundation (KAW 2016.0341 and KAW 2016.0352) and the Swedish Governmental Agency for Innovation Systems (VINNOVA 2016-00504). We also acknowledge the Swedish Metabolomics Centre for technical support.
We thank Dr. Voichita Mihali and Prof. Cornelia G. Palivan (University of Basel) for nanoparticle tracking analysis, Dr. Jonas M. Nikoloff (ETH Zurich) for help with microscopy, the team of Single-Cell Facility and of Clean Room Facility of the Department of Biosystems Science and Engineering (ETH Zurich) for their valuable help and advice, and Prof. David Juncker (McGill University) for the advice on using lipid-staining for EV detection. We gratefully acknowledge the funding from the European Research Council (ERC Consolidator Grant No. 681587 to P.S.D.), and the National Centre of Competence in Research (NCCR) AntiResist funded by the Swiss National Science Foundation (grant number 51NF40_180541).