cometadata/test-preprints-extracted-funding huggingface dataset:
We thank a shared instrumentation grant for the Influx (S10OD020056) and LSRII (S10RR027050) flow cytometer at the Columbia Center for Translational Immunology (CCTI) flow cytometry core. The research in the Wang laboratory is supported by NIH (GM129157, HD095938, and HD097268) and NYSTEM (C32583GG and C32569GG). This research used the Shared Resource for Genomics and High Throughput Screening funded partly through the NIH/NCI Cancer Center Support Grant P30CA013696 and the NIH National Center for Advancing Translational Sciences Grant UL1TR001873. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH.
We thank the Delavault lab for sharing with us seeds of Phelipanche ramosa , the Runo lab for providing seeds of Striga hermonthica and Alectra vogelii , and the Aly lab for collecting for us seeds of O. crenata . This research received financial support from the German Science Foundation (DFG, WI 4507/3-1 to S.W.) and the German-Israeli Foundation for Scientific Research and Development (GIF, G-2415-413.13/2016 to S.W.).
This project has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement no. 101021019). The study was also supported by the Swedish Cancer Society, Swedish Foundation for Strategic Research, AstraZeneca and Science for Life Laboratory. We also acknowledge the Swedish Childhood Tumour Biobank, supported by the Swedish Childhood Cancer Fund, for access and handling of patient biobank material/sequencing data and the Swedish Childhood Cancer Fund. We would like to thank the National Genomics Infrastructure, Sweden, for providing infrastructure support. We thank A. Mollbrink, X.M. Abalo, M. Nistér and P. Lundin for helpful assistance and discussions. A.D.L. was supported by a Cancer Research UK Clinician Scientist Fellowship award (C57899/A25812) that also funded W.Y, A.E., F.C.H, R.C. and A.D.L. have received support from the Oxford National Institute for Health Research (NIHR) Biomedical Research Centre Surgical Innovation and Evaluation Theme. S.F was funded by the Hanson Trust Research (HJD00160). I.G.M. is grateful to the John Black Charitable Foundation for support, D.D is grateful to the Prostate Cancer Foundation, and D.J.W. is grateful to the Cancer Research UK Oxford Centre. Computation used the Oxford Biomedical Research Computing facility, a joint development between the Wellcome Centre for Human Genetics and the Big Data Institute supported by Health Data Research UK and the NIHR Oxford Biomedical Research Centre. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR or the Department of Health. We appreciate the kind assistance of A. Ståhl, R.A. Novoa and K. Rieger with additional histology assessment of specimen in this study.
This work was supported mainly by the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) under grant numbers 13/07937-8, 20/06970-5, as well as the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) line 001. Authors were supported by FAPESP fellowships #2019/184024, #2019/05226-3, #2021/02481-2, #2017/14713-0. T.K. was supported by Fellowships from Uehara Memorial Foundation and the International Medical Research Foundation; V.I.K. acknowledges grants from BBSRC (BB/M023389/1 and BB/R008167/2). We acknowledge Silvânia M. P. Neves and her animal facility crew for exceptional expert animal care; Natália Soares Ferreira and Mario Costa Cruz from the Centro de Facilidades de Apoio à Pesquisa (CEFAP) for excellent technical assistance in the Confocal experiments; Camille C. Caldeira da Silva and Sirlei Mendes de Oliveira for the remarkable technical support. We also acknowledge Dr. Sergio Menezes-Filho for initial animal experiments and Prof Alexandre Bruni-Cardoso for reagent donation. Parts of Figure 4D were drawn using pictures from Servier Medical Art. Servier Medical Art by Servier is licensed under a Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/).
The authors thank Emma Ruimschotel for technical assistance, Robin Haak and Huub Terra for help with spike sorting, Huub Terra for providing feedback on the manuscript and the Mechatronics department and Animal facilities of the NIN for their services. Figures 1A&amp;B, 2A, 3A and 4A were created with BioRender.com (2022). This project has received funding from the NeuroTime Erasmus+ program of the European Commission and the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreements No.785907 (HBP SGA2) and 945539 (HBP SGA3).
The work on the paper was funded by the Ministry of research and education (BMBF) Germany (grants number 031L0300D, 031L0302A) and under Germany's Excellence Strategy-MATH+ : The Berlin Mathematics Research Center (EXC-2046/1)-project no. 390685689 (subproject EF413). Additional resources have been provided by TU Berlin und Zuse Institute Berlin. available under aCC-BY-ND 4.0 International license.
We thank Volker Nischwitz (Central Institute for Engineering, Electronics and Analytics, Analytics (ZEA-3), Forschungszentrum Jülich, 52428, Jülich, Germany) for determination of silicon concentration of the used DISC1 SiNaPs by ICP-MS. C.K. was supported by a grant from the DFG 1679/14-1. The study was further supported by the Swedish Research Council (Grant No. 523-2014-3467 (SC), Erling Persson Foundation (CMS), 2021-02251_VR (SE), 2019-01452_VR (GE)), Karolinska Institutet and Stockholm County Council (20160328, 20180487 [SC], (20190175) [SE], 20190447 [CMS]). Development of the sFIDA technology was supported by the programs 'Biomarkers Across Neurodegenerative Diseases I + II' of The Alzheimer's Association, Alzheimer's Research UK and the Weston Brain Institute (11084 and BAND-19614337). We are also grateful for support from The Michael J. Fox Foundation for Parkinson's Research (14977, 009889), from the ALS Association and from the Packard Center (19-SI-476)
This work was partially supported by NSF DMS grants 1555237 and 2152115 to COD. KCAW was graciously supported by the EPSRC New Horizons grant (EP/V048716/1) and the EPSRC Hub for Quantitative Modeling in Healthcare (EP/T017856/1). The PDAPP data were collected under the Medical Research Council grant G1100623 (FT), and the rTg4510 data under the Alzheimer's Society Junior Fellowship grant AS-JF-14-007 (FT). KCAW and FT received support from the the Wellcome Trust ISSF2 Centre grant WT105618MA.
This work was supported by AMED-PRIME to F.O. under Grant Number 20gm6310011h0001. This work was also supported by grants from the Japan Society for the Promotion of Science to H.K. under Grant Number 22K20731, to F.O. under Grant Number 19H03367, 22H02769, and to M.M. under Grant Number 16H06385, 21H04774 and 21K19206. This work was partially supported by the Uehara Memorial Foundation to F.O. and Japan Science and Technology Agency to H.K. under Grant Number JPMJAX2226.
Institute of MIT and Harvard. The funders had no role in study design, data collection and analysis, and decision to publish or preparation of the manuscript. Computational analyses were performed on the O2 High Performance Compute Cluster, supported by the Research Computing Group, at Harvard Medical School (http://rc.hms.harvard.edu), the UK Biobank Research Analysis Platform, and the All of Us Researcher Workbench. The All of Us Research Program is supported by the National Institutes of Health, Office of the Director: Regional Medical Centers: 1 OT2 OD026549; 1 OT2 OD026554; 1 OT2 OD026557; 1 OT2 OD026556; 1 OT2 OD026550; 1 OT2 OD 026552; 1 OT2 OD026553; 1 OT2 OD026548; 1 OT2 OD026551; 1 OT2 OD026555; IAA #: AOD 16037; Federally Qualified Health Centers: HHSN 263201600085U; Data and Research Center: 5 U2C OD023196; Biobank: 1 U24 OD023121; The Participant Center: U24 OD023176; Participant Technology Systems Center: 1 U24 OD023163; Communications and Engagement: 3 OT2 OD023205; 3 OT2 OD023206; and Community Partners: 1 OT2 OD025277; 3 OT2 OD025315; 1 OT2 OD025337; 1 OT2 OD025276. In addition, the All of Us Research Program would not be possible without the partnership of its participants. The Genotype-Tissue Expression (GTEx) Project was supported by the Common Fund of the Office of the Director of the National Institutes of Health, and by NCI, NHGRI, NHLBI, NIDA, NIMH, and NINDS.
We thank Dr. Yukihide Momozawa in RIKEN Center for Integrative Medical Sciences and the members of the BioBank Japan Project, headquartered in the University of Tokyo Institute of Medical Science, for supporting this project. This research was conducted using the UK Biobank Resource under application number 40709. M.L.A.H. was supported by US NIH Fellowship F32 HL160061. R.E.H. and S.A.M. were supported by US NIH grant R01 HG006855. M.A.S. was supported by US NIH Fellowship F31 MH124393. N.K. was supported by US NIH training grant T32 HG002295. A.R.B. was supported by US NIH fellowship F31 HL154537. R.E.M. was supported by US NIH grant K25 HL150334. C.T. was supported by Japan Agency for Medical Research and Development (AMED) grants JP21kk0305013, JP21tm0424220, and JP21ck0106642, and Japan Society for the Promotion of Science (JSPS) KAKENHI grant JP20H00462. P.-R.L. was supported by US NIH grant DP2 ES030554, a Burroughs Wellcome Fund Career Award at the Scientific Interfaces, and the Next Generation Fund at the Broad
## Ligand-receptor interactions supported by complementary analyses and co-culture model
We are grateful to the patients and families who contributed their time and surgical specimens to this study. We thank K. Cormier for assistance with tissue sectioning; E. Miller, P. Danaher, S. He, S. Wiegel, A. Wardhani, E. Rueckert from NanoString for assistance with project coordination and data analysis; and D. Moschella, T. Balducci, S. McSorley, S. Sullivan, M. Pivovarov, K. Yee, K. Mercer, J. Teixeira, and K. Anderson for administrative and technical support. This work was supported in part by NCI K08CA270417 (W.L.H.), Burroughs Wellcome Fund Career Award for Medical Scientists (W.L.H.), Pancreatic Cancer Action Network Career Development Award (W.L.H.), SU2C-Lustgarten Foundation (T.J., T.S.H., D.T.T.), Robert L. Fine Cancer Research Foundation (D.T.T.), the Evergrande Center (J.C., M.H.), and the Helmsley Foundation (J-W.C., M.H.). The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.
The Arizona Study of Aging and Neurodegenerative Disorders and Brain and Body Donation Program has been supported by the National Institute of Neurological Disorders and Stroke (U24 NS072026 National Brain and Tissue Resource for Parkinson's Disease and Related Disorders), the National Institute on Aging (P30 AG19610 and P30AG072980, Arizona Alzheimer's Disease Center), the Arizona Department of Health Services (contract 211002, Arizona Alzheimer's Research Center), the Arizona Biomedical Research Commission (contracts 4001, 0011, 05-901 and 1001 to the Arizona Parkinson's Disease Consortium), and the Michael J. Fox Foundation for Parkinson's Research.
We are thankful to the SERB, India (CRG/2021/003984), and Department of Biotechnology (DBT) 296 (BT/PR 24520/MED/29/1222/2017) for the funding provided to K.L. This study is supported in 297 part by ViiV Healthcare and the HIV Research Trust 2019 awarded to S.K. as part of his Graduate 298 (Ph.D.) work training and gaining expertise in Next Generation Sequencing based technologies to 299 sequence single B cell and bulk B cell repertoire sequencing. The funders had no role in the decision 300 to publish or the preparation of the manuscript. 301
We thank Adrian Diaz for the invaluable help in the distribution of this software. This work has been supported by the European Union's Horizon 2020 research and innovation programme under the Marie Skglyph[suppress] lodowska-Curie grant agreement [813239 to J.R.-M. and J.G.-G.]; Research Foundation Flanders (FWO) [G.032816N to G.O., G.028821N to D.B.]; Research Foundation Flanders (FWO) International Research Infrastructure [I000323N to W.V.]; COST Action ML4NGP, CA21160, supported by COST (European Cooperation in Science and Technology). The resources and services used in this work were provided by the VSC (Flemish Supercomputer Center), funded by the Research Foundation - Flanders (FWO) and the Flemish Government.
The authors thank Pavlos Kollias for help building the behavioral task control system; Neeraja Rajagopalan, Matthew Panichello and Sina Tafazoli for help during recordings; Nathaniel Daw, Flora Bouchacourt and Harrison Ritz for their insights into the behavioral and neural analyses; and Alex Libby, Junchol Park, Harrison Ritz, Qinpu He, Sina Tafazoli, Motoaki Uchimura and Adel Ardalan for their feedback during the writing of this manuscript. This work was supported by NSF CAREER BCS-2143391 to TJB and a post-doctoral project grant by the Phillips' Foundation to CIJ.
This work was supported by UK Medical Research Council grants MR/N030117/1 and MR/W024233/1 and FlyBase grant NIH/NHGRI U41HG000739.
picture of the experimental landscape of EGFR signaling research (Fig. 2D). Over half of the genes in the EGFR pathway group are supported by only one experimental observation, many of which are categorized as regulatory components. Our comprehensive identification of these single papers will help researchers find experimental results that may confirm their own observations and avoid duplication of effort.
We thank J. Nunnari and M. Le Vasseur for sharing the mitochondrial split GFP system, and J.M. Replogle for helping establish the CRISPRi screening system using the split GFP strategy. We thank Y.H. Chen for assistance with computational analyses, and Z. Levine and K.E. Yost for careful reading and input on the manuscript. We thank the Whitehead Institute and Koch Institute Flow Cytometry Cores for access to FACS machines; the Whitehead Institute Genome Technology Core for support with sequencing of screen libraries; the Whitehead Institute W.M. Keck Microscopy Facility for access to confocal microscopes and support with imaging analysis; and the Whitehead Proteomics Core for support for mass spectrometry experiments. This work was supported by the NIH pre-doctoral training grant T32GM007287 (G.M.), the Larry L. Hillblom Foundation (A.J.I.), the Fannie and John Hertz Foundation and NSF Graduate Research Fellowships (R.A.S.), the Heritage Medical Research Institute (R.M.V.) Human Frontier Science Program 2019L/LT000858 (A.G.), and the Howard Hughes Medical Institute (J.S.W.).
We thank the staff at the RIKEN Biosystems Dynamics Research animal facility for animal care and in vitro fertilization, Hiroko Tsukamura (Nagoya Univ), Tomomi Karigo (Johns Hopkins University), Ken Murata (the University of Tokyo), and members of the Miyamichi laboratory for the critical reading of the manuscript, Manami Fujii and Gen-ichi Tasaka for the technical assistance, and the University of North Carolina Vector Core and Canadian Neurophotonics Platform Viral Vector Core Facility for the AAV productions. This study was supported by Grants-in-Aid from the Japan Society for the Promotion of Science (JSPS) to T.G. (Nos. 19K16270 and 21K15194) and K.M. (Nos. 20K20589 and 21H02587), Mitsubishi foundation and a Takeda Life Science grant to K.M., and a RIKEN internal fund to K.M. T.G. was also supported by RIKEN Special Postdoctoral Researchers Program.
This work was supported by the grants from the Swedish Research Council (YI: 2020-03380), the Ollie and Elof Ericsson foundation (YI) and the Cancer Research UK (CRUK) (NED: Senior Cancer Research Fellowship C68484/A28159). M. D. is supported by a Marie Sklodowska-Curie European Training Network Grant #860517 (Ubimotif). Sequencing was performed by the SNP&amp;SEQ Technology Platform in Stockholm. The facility is part of the National Genomic Infrastructure (NGI) Sweden and Science for Life Laboratory and is also supported by the Swedish Research Council and the Knut and Alice Wallenberg. Work at the Novo Nordisk Foundation Center for Protein Research is supported by grant NNF14CC0001. We thank Dr. Sachdev Sidhu for providing the phagemid and several of the expression constructs. We thank Prof. Robert Winqvist for the FLAG-ABRAXAS1 wild-type and mutant constructs, Dr. Andreas Ernst for the ATG8 domain constructs, and Prof. Carlos Fontes and Renaud Vincentelli for constructs for PDZ domain expression.
Mr. Soura Chakraborty was a recipient of M.Sc., student fellowship from Department of Biotechnology (DBT), Government of India. Ms. Shrabonti Chatterjee is a recipient of Non - National Eligibility Test (Non - NET) fellowship from University Grants Commission (UGC), Government of India. Ms. Subhashree Mardi and Mr. Joydeep Mahata are recipients of DST - INSPIRE (Department of Science and Technology - Innovation in Science Pursuit for Inspired Research) Post - Graduate fellowship from Department of Science and Technology (DST), Government of India. We thank the above funding agencies for their financial support.
Acknowledgments. We thank Luke D. Lavis (Janelia Research Campus, Ashburn, VA, USA) for generously providing the Janelia fluor dyes. We acknowledge the Flow Cytometry core (Research Technology Support Facility, Michigan State University) and the Confocal Laser Scanning Microscopy core (Center for Advanced Microscopy, Michigan State University) for supporting our cell sorting and microscopy experiments. The order of the authors C.B and D.B. was decided by a randomization process and both authors contributed equally to the paper; co-first authors reserve the right to list themselves first on their curriculum vitae. This work was supported by a grant from the NIH (DP2 GM142307) to J.C.S.
Infrastructure Programs (P40 OD010440). This work was supported in part by funds from a Leon Levy Fellowship to N.S. and by NIH grant R35NS105094 to S.S.
We thank Oliver Hobert and Yuichi Lino for strains; The Rockefeller University Flow Cytometry and Genomics Resource Centers for technical support; Menachem Katz and members of the Shaham lab for experimental advice, comments and discussion. Some strains were provided by the CGC, which is funded by NIH Office of Research
This work was supported by INSERM, ANR (ANR-19-CE16-0014-01 and ANR-22-CE160026-02 to E.P.), FRM (Fondation pour la Recherche Medicale, EQU202203014657 to D.N.A.), a Neurocampus Startup grant provided by the Region Aquitaine (2018.599 to A.B.), GPR Brain_2030 (PhD extension grant to P.M.), IDEX ATTRACTIVITE Chaires Neurocampus of the University of Bordeaux (AB) and financial support from the French government in the framework of the University of Bordeaux's IdEx "Investments for the Future" program / GPR BRAIN_2030. We gratefully acknowledge Cedric Dupuy for animal care. This work benefited from the support of the Animal Housing and Genotyping facilities funded by INSERM and LabEX BRAIN ANR-10-LABX-43. Acquisitions with the confocal Leica SP5 and slide scanner were done in the Bordeaux Imaging Center (BIC), a service unit of the CNRS-INSERM and Bordeaux University, member of the national infrastructure France BioImaging supported by the French National Research Agency (ANR-10-INBS-04). The funding bodies had no influence on design, data collection, data analysis or interpretation of data.
Acknowledgments. CJP was funded by the Leon Levy Fellowship in Neuroscience (CP, 20222023). Supported by grants from: National Institutes of Health (NS102722, DK118971, DE026806, DE029951, RM1DE033491 (NWB, BLS), GM147088 (ARBT) and Department of Defense (W81XWH1810431, W81XWH2210239, NWB, BLS). We thank Laura Kilpatrick and Stephen Hill from the University of Nottingham, and Promega Corporation for NRP1 cDNA plasmids. We thank Paz Durán for the provision of CAD.a cells.
- NeuroIMAGE: This project was supported by grants from National Institutes of Health (grant 441 R01MH62873 to SV Faraone) for initial sample recruitment, and from NWO Large 442 Investment (grant 1750102007010 to JK Buitelaar), NWO Brain &amp; Cognition (grant 433-09443 242 to JK Buitelaar), and grants from Radboud University Medical Center, University Medical 444 Center Groningen, Accare, and VU University Amsterdam for subsequent assessment 445 waves. NeuroIMAGE also received funding from the European Community's Seventh 446 Framework Programme (FP7/2007 -2013) under grant agreements n° 602805 447 (Aggressotype), n° 278948 (TACTICS), and n° 602450 (IMAGEMEND), and from the 448 European Community's Horizon 2020 Programme (H2020/2014 - 2020) under grant 449 agreements n° 643051 (MiND), n° 667302 (CoCA), and n° 728018 (Eat2beNICE). 450 - IMpACT: We acknowledge funding from the Netherlands Organization for Scientific 451 Research (NWO), i.e. the Veni Innovation Program (grant 016-196-115 to MH) and the Vici 452 Innovation Program (grant 016-130-669 to BF). The work was also supported by the 453 European College of Neuropsychopharmacology (ECNP) Network 'ADHD Across the 454 Lifespan'. 455 - BJ and BF were also supported by funding from the European Community's Horizon 2020 456 Programme (H2020/2014 - 2020) under grant agreement n° 847879 (PRIME). 457
This research was supported in part by Public Health Service grants from the National 392 Institutes of Health for grants P01 AI 057788 (to MKE), T32 AI055413 (to V.R.T.), S10 393 OD028480 that supported purchasing the Zeiss Laser Scanning Microscope LSM 980 394 with Airyscan 2, and P30 DK 056338 (to H. El-Serag), which supports the Texas Medical 395 Center Digestive Diseases Center. The authors would like to acknowledge the Advanced 396 Technology Core Laboratories (Baylor College of Medicine), specifically the Integrated 397 Microscopy Core with funding from the NIH (DK56338, CA125123, ES030285), and 398 CPRIT (RP150578, RP170719). 399
- This study was supported by the Fondation Cœur &amp; Recherche (the SociØtØ Française 75 - de Cardiologie), the FØdØration Française de Cardiologie, ERA-CVD (« CHEMICAL » 76 - consortium, JTC 2019) and the Fondation UniversitØ de Bordeaux. The laboratory of 77 - Hematology of the University Hospital of Bordeaux benefitted of a convention with the 78 - Nouvelle Aquitaine Region (2018-1R30113-8473520) for the acquisition of the Nextseq 550Dx sequencer used in this study. Registration: URL: https://clinicaltrials.gov; Unique identifier: NCT04581057.
The study was supported by an R00 award from the National Heart, Lung and Blood Institute (HL151900-03), Cystic Fibrosis Foundation (CFF) K-booster award (VAIDYA22A0-KB) and Technology Development Fund at Nationwide Children's Hospital to SV. The Cure Cystic Fibrosis Columbus (C3) Epithelial Cell Core (ECC) at Nationwide Children's Hospital (NCH) and The Ohio State University (OSU) provided primary human airway stem cells, advice, and tools for this work, with the help of the NCH Biopathology Center Core and Data Collaboration Team. C3 is supported by a Cystic Fibrosis Foundation Research Development Program Grant (MCCOY17R2), the NCH Division of Pediatric Pulmonary Medicine (MCCOY19Ro), and the OSU Center for Clinical and Translational Science (UL1TR002733).
Acknowledgements: This study was funded by the Intramural Research Program of the National Institute of Arthritis and Musculoskeletal and Skin Diseases (Z01-AR041198). Additional support was provided by the Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Z01-AI001098). The work utilized the computational resources of the NIH high-performance computing cluster Biowulf (http://hpc.nih.gov).
Acknowledgements: This study was funded by the Intramural Research Program of the National Institute of Arthritis and Musculoskeletal and Skin Diseases (Z01-AR041198). Additional support was provided by the Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Z01-AI001098). This work utilized the resources of the Genomics Technology Section and the Flow Cytometry Section of the Intramural Research Program of NIAMS. The work utilized the computational resources of the NIH high-performance computing cluster Biowulf (http://hpc.nih.gov).