cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3726181_d3.v1
title: Additional file 3: Table S3. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: Functional divergence of different classes of syntenic gene pairs in S. indicum Subgenome2 compared to V. vinifera genome. (XLSX 419 kb)
DOI: 10.6084/m9.figshare.c.3726181_d3
title: Additional file 3: Table S3. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: Functional divergence of different classes of syntenic gene pairs in S. indicum Subgenome2 compared to V. vinifera genome. (XLSX 419 kb)
DOI: 10.6084/m9.figshare.c.3726193_d1
title: Additional file 1 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: The disease-miRNA associations for constructing the DGR tripartite. We list the disease-miRNA associations for constructing the DGR tripartite here including the cancer related tripartite and the non-cancer disease associated tripartite.This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 689 kb)
DOI: 10.6084/m9.figshare.c.3726193_d1.v1
title: Additional file 1 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: The disease-miRNA associations for constructing the DGR tripartite. We list the disease-miRNA associations for constructing the DGR tripartite here including the cancer related tripartite and the non-cancer disease associated tripartite.This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 689 kb)
DOI: 10.6084/m9.figshare.c.3726181_d2.v1
title: Additional file 2: Table S2. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: Functional divergence of different classes of syntenic gene pairs in S. indicum Subgenome1 compared to V. vinifera genome. (XLSX 428 kb)
DOI: 10.6084/m9.figshare.c.3726181_d1.v1
title: Additional file 1: Table S1. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: The syntenic gene pairs in S. indicum compared to V. vinifera. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.c.3726181_d2
title: Additional file 2: Table S2. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: Functional divergence of different classes of syntenic gene pairs in S. indicum Subgenome1 compared to V. vinifera genome. (XLSX 428 kb)
DOI: 10.6084/m9.figshare.c.3726181_d1
title: Additional file 1: Table S1. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: The syntenic gene pairs in S. indicum compared to V. vinifera. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.c.3725161_d2.v1
title: Additional file 2: Table S1. of High-throughput sequencing of pituitary and hypothalamic microRNA transcriptome associated with high rate of egg production

description: The main reproductive traits of the selected LP and HP samples. Table S2. Primer sequences for real-time PCR validation and SNP detection. Table S3. Overview of miRNA-seq data of all samples. Table S4. Identities of various RNA sequences in pituitary and hypothalamic tissues. Table S5. Expression profile of known miRNAs in pituitary and hypothalamic tissues of low- and high-rate egg production chickens. Table S6. Novel miRNAs expressed in pituitary and hypothalamus tissues of low- and high-rate egg production chickens. Table S7. The distribution of miRNA pairs in pituitary and hypothalamic tissues. Table S8. Differentially expressed miRNAs between low- and high-rate egg production chickens in pituitary and hypothalamic tissues. Table S9. The prediction of the differentially expressed miRNA targets in pituitary and hypothalamic tissues. Table S10. GO and KEGG pathway annotations for the miRNA targets in pituitary and hypothalamic tissues. Table S11. miRNAs and their predicted target genes involved in the regulation processes of reproduction. Table S12. Differentially expressed genes between low- and high-rate egg production chickens in pituitary and hypothalamic tissues. Table S13. The predicted miRNA-target pairs that are differentially and reciprocally expressed in pituitary and hypothalamic tissues. Table S14. The haplotype distribution and sequence variations in the selected miRNA precursors. (XLSX 1731Â kb)
DOI: 10.6084/m9.figshare.c.3725161_d2
title: Additional file 2: Table S1. of High-throughput sequencing of pituitary and hypothalamic microRNA transcriptome associated with high rate of egg production

description: The main reproductive traits of the selected LP and HP samples. Table S2. Primer sequences for real-time PCR validation and SNP detection. Table S3. Overview of miRNA-seq data of all samples. Table S4. Identities of various RNA sequences in pituitary and hypothalamic tissues. Table S5. Expression profile of known miRNAs in pituitary and hypothalamic tissues of low- and high-rate egg production chickens. Table S6. Novel miRNAs expressed in pituitary and hypothalamus tissues of low- and high-rate egg production chickens. Table S7. The distribution of miRNA pairs in pituitary and hypothalamic tissues. Table S8. Differentially expressed miRNAs between low- and high-rate egg production chickens in pituitary and hypothalamic tissues. Table S9. The prediction of the differentially expressed miRNA targets in pituitary and hypothalamic tissues. Table S10. GO and KEGG pathway annotations for the miRNA targets in pituitary and hypothalamic tissues. Table S11. miRNAs and their predicted target genes involved in the regulation processes of reproduction. Table S12. Differentially expressed genes between low- and high-rate egg production chickens in pituitary and hypothalamic tissues. Table S13. The predicted miRNA-target pairs that are differentially and reciprocally expressed in pituitary and hypothalamic tissues. Table S14. The haplotype distribution and sequence variations in the selected miRNA precursors. (XLSX 1731Â kb)
DOI: 10.6084/m9.figshare.c.3725158_d1.v1
title: Additional file 1: of Differential gene expression profiling of endometrium during the mid-luteal phase of the estrous cycle between a repeat breeder (RB) and non-RB cows

description: Table S1. List of up- and down-regulated genes in CAR of ipsilateral uterine horns of RB cows (n = 4) on Day 15 of the estrous cycle as compared with non-RB cows (n = 4). Table S2. List of up- and down-regulated genes in ICAR of ipsilateral uterine horns of RB cows on Day 15 of the estrous cycle as compared with non-RB cows. Table S3. List of up- and down-regulated genes in CAR of contralateral uterine horns of RB cows on Day 15 of the estrous cycle as compared with non-RB cows. Table S4. List of up- and down-regulated genes in ICAR of contralateral uterine horns of RB cows on Day 15 of the estrous cycle as compared with non-RB cows. (XLSX 254 kb)
DOI: 10.6084/m9.figshare.c.3725158_d1
title: Additional file 1: of Differential gene expression profiling of endometrium during the mid-luteal phase of the estrous cycle between a repeat breeder (RB) and non-RB cows

description: Table S1. List of up- and down-regulated genes in CAR of ipsilateral uterine horns of RB cows (n = 4) on Day 15 of the estrous cycle as compared with non-RB cows (n = 4). Table S2. List of up- and down-regulated genes in ICAR of ipsilateral uterine horns of RB cows on Day 15 of the estrous cycle as compared with non-RB cows. Table S3. List of up- and down-regulated genes in CAR of contralateral uterine horns of RB cows on Day 15 of the estrous cycle as compared with non-RB cows. Table S4. List of up- and down-regulated genes in ICAR of contralateral uterine horns of RB cows on Day 15 of the estrous cycle as compared with non-RB cows. (XLSX 254 kb)
DOI: 10.6084/m9.figshare.c.3723835_d3
title: MOESM3 of Growth curve registration for evaluating salinity tolerance in barley

description: Additional file 3. Dataset for Run 3.
DOI: 10.6084/m9.figshare.c.3723787_d1.v1
title: Additional file 1: Table S1. of Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq

description: Distribution statistics of SLAFs and polymorphic SLAFs on each chromosome. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3723787_d1
title: Additional file 1: Table S1. of Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq

description: Distribution statistics of SLAFs and polymorphic SLAFs on each chromosome. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3723748_d4.v1
title: Additional file 3: of Global transcriptome analysis of Huperzia serrata and identification of critical genes involved in the biosynthesis of huperzine A

description: List of transcription factors (TFs) obtained from H. serrata transcriptome. (XLS 194Â kb)
DOI: 10.15468/dl.cwufqz
title: Occurrence Download

description: A dataset containing 82698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyathea J.E.Sm."
 ]
}

 The dataset includes 82698 records from 557 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035506-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yqfku
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammodytes personatus Girard, 1856",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035511-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3723019_d5.v1
title: Additional file 5: Table S3. of Lessons learned from additional research analyses of unsolved clinical exome cases

description: Diagnostic rate differs among groups of patients with different phenotypic features. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3723019_d6.v1
title: Additional file 6: Table S4. of Lessons learned from additional research analyses of unsolved clinical exome cases

description: Diagnostic rate in singleton cases, trios, quartets and families with multiple affected individuals. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3723019_d6
title: Additional file 6: Table S4. of Lessons learned from additional research analyses of unsolved clinical exome cases

description: Diagnostic rate in singleton cases, trios, quartets and families with multiple affected individuals. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3723019_d5
title: Additional file 5: Table S3. of Lessons learned from additional research analyses of unsolved clinical exome cases

description: Diagnostic rate differs among groups of patients with different phenotypic features. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3723019_d3.v1
title: Additional file 3: Table S2. of Lessons learned from additional research analyses of unsolved clinical exome cases

description: De novo and recessive variants in candidate or recently published genes identified by collaboration between BG and BHCMG. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3723019_d3
title: Additional file 3: Table S2. of Lessons learned from additional research analyses of unsolved clinical exome cases

description: De novo and recessive variants in candidate or recently published genes identified by collaboration between BG and BHCMG. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3723019_d1.v1
title: Additional file 1: Table S1. of Lessons learned from additional research analyses of unsolved clinical exome cases

description: Summary of phenotypic features for each case. (XLSX 1227 kb)
DOI: 10.6084/m9.figshare.c.3723019_d1
title: Additional file 1: Table S1. of Lessons learned from additional research analyses of unsolved clinical exome cases

description: Summary of phenotypic features for each case. (XLSX 1227 kb)
DOI: 10.6084/m9.figshare.c.3722980_d4.v1
title: Additional file 4: of Vasohibin 2 reduces chemosensitivity to gemcitabine in pancreatic cancer cells via Jun proto-oncogene dependent transactivation of ribonucleotide reductase regulatory subunit M2

description: Human gene expression analysis results using NimbleGen 12x135K microarrays. Differentially expressed genes were identified through Fold Change filtering. Fold change cutoffs of ≥ 3 (upregulation, 211 genes) or ≤ 0.33 (downregulation, 192 genes) were used to identify genes that were significantly differentially expressed. (XLS 69 kb)
DOI: 10.6084/m9.figshare.c.3722980_d4
title: Additional file 4: of Vasohibin 2 reduces chemosensitivity to gemcitabine in pancreatic cancer cells via Jun proto-oncogene dependent transactivation of ribonucleotide reductase regulatory subunit M2

description: Human gene expression analysis results using NimbleGen 12x135K microarrays. Differentially expressed genes were identified through Fold Change filtering. Fold change cutoffs of ≥ 3 (upregulation, 211 genes) or ≤ 0.33 (downregulation, 192 genes) were used to identify genes that were significantly differentially expressed. (XLS 69 kb)
DOI: 10.48610/2ed1d54
title: Stingless bee hybridisation

description: Microsatellite data, raw SNP data, VCF files, R scripts, GBS analysis commands (stacks and vcftools), additional genome assembly data, mitochondrial genomes, and locations and dates of samples for the paper 'Reassessing hybridisation in Australian Tetragonula stingless bees using multiple genetic markers.' This paper re-examined reports of hybridisation in three cryptic stingless bee species in the genus Tetragonula in South East Queensland, Australia (T. carbonaria, T. davenporti, and T. hockingsi). Previous studies on this group using microsatellite markers proposed that hybridisation occasionally takes place. In contrast, we find that using 1,745 SNPs we could reliably separate the three species, with no evidence of contemporary (or recent) hybridisation. We found identical amplicon sequences of the nuclear gene EF1alpha across most individuals of the three species, but low and moderate species-specific polymorphisms in the nuclear gene Opsin and the mitochondrial 16S rRNA gene respectively, with no cases of mito-nuclear discordance at these genes. We confirm that nuclear divergence across these species is low, based on 10-26kb of non-coding sequence flanking EF1alpha and Opsin (0.7-1% pairwise difference between species). However, we find mitogenomes to be far more diverged than nuclear genomes (21.6-23.6% pairwise difference between species). Based on these comprehensive analyses of multiple marker types, we conclude there is no ongoing gene flow among the Tetragonula species of South East Queensland, despite their morphological similarity to one another and the low nuclear divergence among them. The higher resolution provided by multiple SNP markers may lead to lower estimates of contemporary hybridisation more generally.
DOI: 10.6084/m9.figshare.c.3721573_d3.v1
title: Additional file 3: Table S3. of Variation in readmission and mortality following hospitalisation with a diagnosis of heart failure: prospective cohort study using linked data

description: Age-sex adjusted associations between patient, index admission and hospital characteristics and each of the outcomes. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3721573_d2
title: Additional file 2: Table S2. of Variation in readmission and mortality following hospitalisation with a diagnosis of heart failure: prospective cohort study using linked data

description: Multilevel model results for combined 30-day unplanned readmission/mortality: random effect measures and adjusted odds ratios (95% CIs) for individual-level and hospital-level variables. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3721573_d3
title: Additional file 3: Table S3. of Variation in readmission and mortality following hospitalisation with a diagnosis of heart failure: prospective cohort study using linked data

description: Age-sex adjusted associations between patient, index admission and hospital characteristics and each of the outcomes. (XLSX 15 kb)
DOI: 10.15468/dl.abregt
title: Occurrence Download

description: A dataset containing 379397 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 臺灣兩棲類資源調查網 (Taiwan Amphibians Database)"
 ]
}

 The dataset includes 379397 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035490-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3721573_d2.v1
title: Additional file 2: Table S2. of Variation in readmission and mortality following hospitalisation with a diagnosis of heart failure: prospective cohort study using linked data

description: Multilevel model results for combined 30-day unplanned readmission/mortality: random effect measures and adjusted odds ratios (95% CIs) for individual-level and hospital-level variables. (XLSX 15 kb)
DOI: 10.15468/dl.bc7gg3
title: Occurrence Download

description: A dataset containing 13527 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CWS: Waterbird colony database (Atlantic region)"
 ]
}

 The dataset includes 13527 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035512-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28ggfb
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammodytes hexapterus Pallas, 1814",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035513-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3719758_d11.v1
title: Additional file 9: Table S7. of Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency

description: Summary of the differential expressed genes with mutually exclusive exon. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3719758_d11
title: Additional file 9: Table S7. of Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency

description: Summary of the differential expressed genes with mutually exclusive exon. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3719758_d10
title: Additional file 8: Table S6. of Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency

description: Summary of the differential expressed genes with retained intron. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3719758_d10.v1
title: Additional file 8: Table S6. of Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency

description: Summary of the differential expressed genes with retained intron. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3719758_d9
title: Additional file 7: Table S5. of Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency

description: Summary of the differential expressed genes with skipped exon. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3719758_d8.v1
title: Additional file 6: Table S4. of Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency

description: Protein functional classification in differentially expressed genes between severe MPP and mild MPP. (XLS 32Â kb)
DOI: 10.6084/m9.figshare.c.3719758_d9.v1
title: Additional file 7: Table S5. of Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency

description: Summary of the differential expressed genes with skipped exon. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3719758_d8
title: Additional file 6: Table S4. of Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency

description: Protein functional classification in differentially expressed genes between severe MPP and mild MPP. (XLS 32Â kb)
DOI: 10.6084/m9.figshare.c.3719749_d2
title: Additional file 2: Supplementary tables. of Epigenetic and genetic alterations and their influence on gene regulation in chronic lymphocytic leukemia

description: Table S1. Overlap and enrichment of repeated elements along dREs. Table S2. Enrichment of dREs in the regulatory domains of CLL-up/down-regulated genes. Table S3. Enrichment of gene groups to Gene Ontology biological processes. Table S4. Density of GWAS SNPs associated with agglomerated traits along dRE. Table S5. Association of dREs to individual GWAS traits. Table S6. Prediction results and GWAS knowledge of the cancer-related GWAS SNPs which exhibit the significant allele frequency difference between CLL and normal samples. Table S7. Enrichment of TFBSs along dREs. Table S8. Enrichment of TFBS loss caused by CLL-associated alleles along lost dREs. Table S9. Enrichment of TFBS gain caused by CLL-associated alleles along gained dREs. (XLSX 64 kb)
DOI: 10.57841/casdc.0004231
title: 对虾“渤海1号”、长牡蛎“海蛎1号”、“前沿1号”新品种验收及推广证明
DOI: 10.6084/m9.figshare.c.3719647_d8
title: Additional file 8: of Correspondence of D. melanogaster and C. elegans developmental stages revealed by alternative splicing characteristics of conserved exons

description: Blast score and inclusion/skipping ratio of exon pairs. Alignment score reported by BLAST and inclusion/skipping ratio calculated using FPKM reported by Cufflinks of exon pairs with high DNA-seq similarity. (XLSX 6077Â kb)
DOI: 10.6084/m9.figshare.c.3719647_d8.v1
title: Additional file 8: of Correspondence of D. melanogaster and C. elegans developmental stages revealed by alternative splicing characteristics of conserved exons

description: Blast score and inclusion/skipping ratio of exon pairs. Alignment score reported by BLAST and inclusion/skipping ratio calculated using FPKM reported by Cufflinks of exon pairs with high DNA-seq similarity. (XLSX 6077Â kb)
DOI: 10.6084/m9.figshare.c.3719647_d7.v1
title: Additional file 7: of Correspondence of D. melanogaster and C. elegans developmental stages revealed by alternative splicing characteristics of conserved exons

description: Tissue/cell-associated exons. Associated exons of fly and worm tissue/cells. (XLSX 464Â kb)
DOI: 10.6084/m9.figshare.c.3719647_d7
title: Additional file 7: of Correspondence of D. melanogaster and C. elegans developmental stages revealed by alternative splicing characteristics of conserved exons

description: Tissue/cell-associated exons. Associated exons of fly and worm tissue/cells. (XLSX 464Â kb)