cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/g4tz8m5p6k
title: Evaluation datasets for LuperQ

description: README.TXT
==========

This package provides everything you need to repeat the experimentation 
regarding the following article:

	A hybrid quantum approach to leveraging data from HTML tables, 
       by Patricia Jiménez, Juan C. Roldán, and Rafael Corchuelo

It has two folders that are explained below.

FOLDER DATA
-----------

This folder provides the full repository used to perform the experimentation.  
It has the following sub-folders:

- nishida: this folder provides the experimental tables in a format that
  is amenable to be used with Nishida et. al.'s proposal.
- original_tables: this folder provides the experimental tables in a
  format that is amenable to be used with the other proposals.
- tomate: this folder has some meta-data that are used for validation
  purposes. The annotation tool is available at 
  http://tomatera.tdg-seville.info.

There are also some additional files: 

- Cambria2.ttf: this is the font used in the notebook; installing it
  is optional.
- enwiki_20180420_100d.txt: this are the embeddings computed to
  experiment with Nishida et. al.'s proposal.
- text-metadata-dict.pk: this is a dictionary with meta-data about
  the tables used in the experimentation.

FOLDER LuperQ
-------------

This folder provides the code that we prepared to perform the
experimentation.  Before you run it for the first time, we recommend 
that you should:

- Create a conda environment called "luperq" in which you must 
  install Python 3.7.
- Activate the "luperq" environment.
- Install the dependencies with "pip install -r requirements.txt".

Now, you should be able to launch the experimentation script from the
command line as follows:

- Change the current directory using "cd LuperQ"
- Execute the script with "python -u ./Experimental-Analysis.py"

Alternatively, you can launch it as a Jupyter notebook, as long as you
perform the following steps:

- Install notebook conda kernels with 
  "conda install -n luperq nb_conda_kernels"
- Install jupyter kernel with "conda install -c anaconda ipykernel"
- Install jupyter kernel into the "luperq" environment with 
  "python -m ipykernel install --user --name=luperq"

Now, you should be able to load the experimentation script in Jupyter.
Just execute all of the cells in sequence.

Whatever means you use to launch the experimentation, it will result in
a number of CSV files with the experimental results in folder "workarea".

NOTES
-----

LuperQ requires access to the D-Wave D-2000 Quantum Processor.  Please,
make your browser for https://www.dwavesys.com/ and follow the
instructions therein to create your account and to install the access key
required to use their processor. To facilitate testing LuperQ, this
implementation uses a Simulated Annealing Sampler provided by D-Wave.
Please, change it if you have a D-Wave account.
DOI: 10.17632/h9bpcnkrt7
title: Curcumin displays a Potent Caloric Restriction Mimetic Effect in an accelerated senescent model of rats

description: Data corresponds to analysis of oxidative stress parameters in rats.
DOI: 10.17632/pyfb56sbb5
title: LDHU3_01.0880

description: hypothetical protein - conserved; Leishmania donovani
DOI: 10.17632/94kp6gdnmf
title: Quantifying the rare earth element enrichment process of bioapatite in deep-sea REY-rich sediments

description: Major, trace and rare earth element of deep-sea sediments, well-preserved fish teeth and Fe–Mn micronodules
DOI: 10.17632/dsz93bvzpb
title: AMIP Simulation Results for the Integrated Moist Physics Parameterization for the Earth System (IMPrES)

description: Simulation results utilized in the following articles, published in the 'Journal of Advances in Modeling Earth Systems (JAMES):'
[1] Title: 'Integrated Moist Physics Parameterization for the Earth System (IMPrES) with Strong Interprocess Consistency'
[2] Title: 'Advanced Double-Moment Cloud Microphysics Scheme for Convective and Stratiform Precipitation in a General Circulation Model'
DOI: 10.17632/spdcdmvm4g
title: Instances for Pm|Mt,Mf|w_jC_j

description: The data set for the scheduling jobs on parallel machines with families and multitasking
DOI: 10.17632/738mp87gh9
title: BLASTOCYSTISMICROBIOTA

description: MANUSCRIPT DATABASE Prevalence of Blastocystis and its association with intestinal dysbiosis in clinically healthy and metabolically ill subjects.
DOI: 10.17632/8kmxvsk55r
title: The Mediating Effect of Rumination in The Relationship Between Secondary Traumatic Stress and Self-Compassion in Psychosocial Support Providers

description: The aim of this study is to determine whether rumination has a mediating role in the relationship between secondary traumatic stress and self-compassion levels of professionals who provide psychosocial assistance to survivors after the earthquake in Turkey on 6 February 2023. The research was organized in accordance with the relational screening model. Within the scope of Turkey Disaster Response Plan, 153 professionals including social workers, psychologists and psychological counsellors who provide psychosocial assistance to earthquake survivors participated in the study. The research data were collected through an online survey link using the Secondary Traumatic Stress Scale, Self-Compassion Scale, Ruminative Reaction Scale and Personal Information Form. In the analysis of the data; descriptive statistics, Pearson correlation analysis and PROCESS Macro (Model 4) were used in the mediation test. According to the results of the study, the direct (β= -0.204) and indirect (β= -0.175) effects of self-compassion on secondary traumatic stress are statistically significant and negative. Therefore, it was determined that rumination played a significant mediating role in this interaction. Accordingly, it is understood that increasing self-compassion and regulating rumination reactions are important in reducing the secondary traumatic stress levels of professionals providing psychosocial assistance.
DOI: 10.17632/bczmf3pr98
title: LINF_350007400

description: DnaJ domain-containing protein | JDP75 | J75
Leishmania infantum (strain JPCM5)
DOI: 10.17632/dgyd445vrz
title: LINF_290022300

description: glutamamyl carboxypeptidase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/t4px4thhj7
title: LINF_160014600

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/v37xs9g3jg
title: Original data of "Decreased histone H3K9 dimethylation in synergy with DNA demethylation of Spi-1 binding site contributes to ADAMTS-5 expression activation in articular cartilage of osteoarthritis mice"

description: Original data of "Decreased histone H3K9 dimethylation in synergy with DNA demethylation of Spi-1 binding site contributes to ADAMTS-5 expression activation in articular cartilage of osteoarthritis mice"
DOI: 10.17632/ydbyn2ng6z
title: Color and Material Preferences in signage design: An eye-tracking study

description: This is the detailed data about eye movement experiment and subjective questionnaire in the paper Color and Material Preferences in signature design: An eye-tracking study.
DOI: 10.17632/66rhfx33cb
title: SPAC deals data 2018 - March 2022

description: 120 SPAC deals from 2018 till 2021: deal terms, performance, financials,
DOI: 10.17632/bsdpyb6sbm
title: PUCV Interno 31. Tabla 21. Revistas de publicación 2015-2019

description: Revistas de publicación de la PUCV 2015-2019 según cuartil
DOI: 10.17632/dybmc8pr5n
title: Supplementary figures of Dupilumab relieves eruptive porokeratosis with severe itch.

description: The data is the supplementary figures of the article named dupilumab relieves eruptive porokeratosis with severe itch. The supplementary figures included 8 figures showing the clinical performance of 4 eruptive pruritic papular porokeratosis patients before and after treatment.
DOI: 10.17632/y55hcrkf65
title: LDHU3_16.1960

description: DNA polymerase I alpha catalytic subunit; Leishmania donovani (HU3 strain)
DOI: 10.17632/3f5fvzbdch
title: Business Cycles in the Economic and Monetary Union Border Regions: Towards Convergence or Divergence?

description: This Dataset presents the detailed analysis results and charts outlining the course of business cycles in the EMU border regions.
DOI: 10.17632/8k5c46zjcc
title: Using nanoindentation to quantify the mechanical (elasticoplasticity, toughness, and brittleness) profile of marine Wufeng-Longmaxi formation shale in South China at the micro scale: Link to sedimentary conditions

description: This is the supplementary material that contains the data related to this paper.
DOI: 10.17632/bn5vzzmj37
title: Raw Gels

description: WB raw gels
DOI: 10.17632/cpkstn7vc2
title: LINF_360011200

description: Elongation factor G1 | EF-G1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/h95pksd5jz
title: JAAD-D-20-03549 Supplemental table 1

description: Supplementary Table 1. Percentage differences (95% CIs) in plasma glutamate/glutamine ratio according to sunburn susceptibility, stratified by selected covariates among all 9,129 participants
DOI: 10.17632/rmxg4xvc82
title: LINF_150020500

description: KREPB7 Leishmania infantum (strain JPCM5)
DOI: 10.17632/rsjk8phdxp
title: Head-to-head comparison of risankizumab and ixekizumab in GenPs

description: Methodology; Figure 1c; Table 1
DOI: 10.17632/5tt7kw7vh7
title: Healthcare-seeking behavior and health expenditures in Iraq

description: Assessment of health seeking behavior and healthcare expenditure in a population sample in Erbil, Iraq.
DOI: 10.17632/djvfvnskv8
title: Data for: Post -fire Vegetation Dynamic Patterns and Drivers in Greater Hinggan Mountains: Insights from Long-term Remote Sensing Data Analysis

description: The compressed package includes the foundational data, code, and the open-source GWR model installer used in this study. The foundational data encompasses EVI, driving factor data, and derivative results obtained from trend analysis. The code, primarily used for some of the trend analyses in this study, is written in MATLAB.
DOI: 10.17632/pvz5kwcvfh
title: KRAW_KRA1_h_2010_2021

description: Ellipsoidal heights of the KRAW and KRA1 reference stations for the years 2010-2021 used in the paper "Phase centre corrections of GNSS antennas and their consistency with ATX catalogues" (DOI: https://doi.org/10.3390/rs14133226)
DOI: 10.17632/t92vfjn8cb
title: Summary of Interview

description: The summary on respondents' experiences in navigating paradoxical leadership and identity in the age of digital transformation era
DOI: 10.17632/bys5jphkpt
title: Novel multi-material photo-curable resins containing high-performance photoinitiating systems and nano additives dedicated to 3D-VAT printing

description: Herein the suitability of new 9-[(E)-2-phenyl]anthracene and 9-[(E)-2-phenyl]phenanthrene derivatives for the role of photosensitizers of diphenylidonium salts to initiate various types of photopolymerization processes using UV- and Vis-LED light sources were presented. The usefulness of the investigated compounds for initiating the cationic photopolymerization of epoxy monomer, radical photopolymerization of an acrylate monomer, and hybrid photopolymerization were tested. The versatility of two-component initiating systems has been verified. The possibility of initiating the process of photopolymerization of resins with the addition of nanoparticles (such as titanium oxide or zinc oxide) was also checked, from which at a subsequent stage of research an attempt was made to obtain photo-curable nanocomposites. To date, literature reports on the preparation of photo-curable nanocomposites refer to two-component initiator systems that are used to initiate hybrid photopolymerization, where the process occurs according to a radical mechanism. The following work presents initiating systems that were also used to initiate the photopolymerization of hybrid resins with the addition of nanoparticles, for which photopolymerizing monomers were used simultaneously according to the radical and cationic mechanism. The use of anthracene and phenanthrene derivatives in combination with the iodonium salt allows for increased process initiation efficiency. Following current trends, it was decided to test the suitability of newly developed two-component initiator systems based on 9-[(E)-2-phenylethenyl]anthracene and 9-[(E)-2-phenylethenyl]phenanthrene derivatives for 3D printing applications in digital light processing technology for which low-budget devices were used. The main aspect discussed in the following work is the formation of photo-curable polymer nanocomposites.
DOI: 10.17632/fw45v2kmcv
title: BookPMachado

description: Scholar's Press
author: Pedro Mota Machado
DOI: 10.17632/pmrd9yrnwg
title: Fronteira Eficiente estimada por Python at the “Open Code Community”

description: Material published at "https://opencodecom.net/"
DOI: 10.17632/r2z86p7b7x
title: Delgado et al. 2023 CRISPR Screen D12 BR

description: CRISPR screen accompanied with Delgado et al. 2023 manuscript (unpublished).
File nomenclature:
Unsorted: input of all cells transduced with sgRNA library  
D8_TL: Sorted cells day 8 post-transduction, top left population (suppressors)
D8_BR: Sorted cells day 8 post-transduction, bottom right population (effectors)
D11_TL: Sorted cells day 11 post-transduction, top left population (suppressors)
D11_BR: Sorted cells day 11 post-transduction, bottom right population (effectors)
D12_TL: Sorted cells day 12 post-transduction, top left population (suppressors)
D12_BR: Sorted cells day 12 post-transduction, bottom right population (effectors)
DOI: 10.17632/yv98vfc9wv
title: Dataset on the Shake Table Experiments of Embedded Foundations Subjected to Increasing and Decreasing Sequential Harmonic Waves

description: Dataset is the raw results and outputs for shake table tests on the superstructure-embedded foundation systems. The experiments carried out at University of Tehran.
DOI: 10.17632/yz7m3466hr
title: LDHU3_13.0060

description: Paraflagellar component 12 | PFC12; Leishmania donovani (HU3 strain)
DOI: 10.17632/z5rf36295w
title: JASA-Census

description: US Census Planning Database 2019 Tract Level Data with Tract Level shapes files. This data is uploaded only for code/data reproducibility for JASA manuscript submission. pdb2019trv3_us.csv is tract level file originally downloaded from the following link https://www.census.gov/topics/research/guidance/planning-databases.2019.html tl_2019.shp are merged per-state tract-level shape files downloaded from https://www2.census.gov/geo/tiger/TIGER2019/TRACT/.
DOI: 10.17632/6ys42f257h
title: Evolution of PE Online During COVID

description: Interview Transcripts for OLPE project
DOI: 10.17632/ftcxjvn9g6
title: Comparison of the gut microbiome of Apis melifera ruttneri (lineage A) vs Apis melifera ligustica and carina (lineage C)

description: Apis mellifera evolved mainly in African, Asian and European continents over thousands of years, leading to the selection of a considerable number of honey bees subspecies that have adapted to various environments such as hot semi-desert zones and cold temperate zones. With the evolution of honey bee in subspecies, it is possible that environmental conditions, food sources and microbial communities typical of the colonized areas have shaped the honey bee gut microbiota. In this study the microbiota of two distinct lineages (mitochondrial haplotypes) of bees Apis mellifera ruttneri (lineage A) and Apis mellifera ligustica and carnica (both lineage C) were compared. Honey bee guts were collected in periods of drought in the respective breeding areas (Malta island and Italian Emilia-Romagna and South Tyrol regions). Microbial DNA from the bee gut was extracted and amplified for the V3-V4 regions of the 16S rRNA gene for bacteria and for ITS2 for fungi.
DOI: 10.17632/gkhjk3sz9x
title: The effect of sulfuric acid, abiotic-organic acids, and biotic acids on serpentinite dissolution and trace metal release: Potential biosignatures

description: Serpentine minerals have been observed or are postulated to exist in multiple locations in the solar system, including impact craters, melange terrains, olivine-rich lithologic units, and subsurface silicate mantle rocks. Serpentine-rich environments are of particular interest in planetary exploration because they host microbial communities on Earth, fueling life via the abiotic reaction of olivine-rich parent rocks with aqueous solutions. On Earth, organic acids produced by biota have been shown to accelerate the dissolution of many minerals including mafic minerals such as olivine. These organic acids can also preferentially release trace elements from the mineral structure, creating potential biosignatures in either reacting solutions or the solid materials. However, organic acids that are formed abiotically have been identified in planetary systems as well as meteorites, complicating the potential usefulness of this tool. 
In this study, we tested aqueous alteration of serpentinite in three groups of solutions: inorganic acids, organic acids that can be created through abiotic processes (termed “abiotic-organics,” including methanesulfonic, nonanoic, valeric, and α-aminoisobutyric acids), and organic acids that are created through biotic processes (termed “biotic acids,” including acetic, citric, glutamic, formic, fumaric, gluconic, glycolic, lactic, malic, and oxalic acids) over a range of temperatures relevant to conditions on Mars and Europa. A total of 48 batch reactor experiments were carried out at 0°C, 22°C, and 62°C in the presence of 16 different acids at pH 2.6 over 28 days. Additionally, experiments were conducted in sulfuric acid to assess aqueous alteration in sulfate-rich environments. These results show that biotic acids accelerate serpentinite dissolution compared to the control inorganic acid, whereas abiotic acids have no or a very small effect. Interestingly, sulfuric acid also enhances serpentinite dissolution over nitric acid. Twenty elements (Ba, Ca, Ce, Co, Cr, Fe, La, Mg, Mn, Mo, Ni, P, Pb, Pr, Sc, Th, Ti, V, Y, and Zr) are released at higher concentrations only in the presence of biotic acids relative to sulfuric acid. Secondary minerals found in the presence of biotic acids were consistently enhanced in Mn, Ti, and W, and we propose that these preferentially released elements and secondary minerals may be important potential biosignatures. We also show that the release of the major rock-forming elements Mg and Si is correlated with the stability constants for the metal:acid aqueous complex, providing a possible mechanistic interpretation for observed results. These results have important implications for potentially detecting life on other planetary bodies, specifically in acidic and sulfur-rich environments such as Mars and Europa.
DOI: 10.17632/j3vyf4js7h
title: Raw data for article "Evaluation of multiple reaction monitoring cubed performed by a quadrupole-linear ion trap mass spectrometer for quantitative determination of 6-sulfatoxymelatonin in urine"

description: Raw data for article 

Evaluation of multiple reaction monitoring cubed performed by a quadrupole-linear ion trap mass spectrometer for quantitative determination of 6-sulfatoxymelatonin in urine 

Leonid V. Lopukhov, Anna V. Balandina, Lilia S. Nigmatullina, Adelya F. Mullakhmetova, Gulnaz E. Synbulatova, Alexander V. Laikov, Victor L. Lopukhov, Tatiana V. Grigoryeva

Files are in .wiff format.
DOI: 10.17632/ngnc4rj8jy
title: Links between volume fractions of non-180 degree domains of the tetragonal and monoclinic phases in 0.75NaNbO3 – 0.15KNbO3 – 0.10CdNb2O6

description: Domain structures of ceramic grains were analysed by taking into account coexisting ferroelectric phases divided into non-180 degree domains  (mechanical twins) in a solid solution with the 0.75NaNbO3 – 0.15KNbO3 – 0.10CdNb2O6 composition.
DOI: 10.17632/vc8rxy598m
title: LFA for CAPA

description: LFA in the diagnosis of CAPA
DOI: 10.17632/67yg8zr49c
title: Data for: The Neoproterozoic alkaline rocks from Fangcheng area, East Qinling (China) and their implications for regional Nb mineralization and tectonic evolution

description: Fangcheng Manuscript dataset
DOI: 10.17632/cr94t52xmh
title: Microphotography of fossils at Pliocene marker levels.

description: wo species of Rotaliidea have been identified at several sites: Ammonia beccarii Linnaeus, 1758, at Imounsis, Illigh, and Tildi, and Elphidium crispum only at Illigh. Ammonia beccarii Linnaeus, 1758, is notable for its abundant distribution in several levels, particularly at level IMS-P4. It is sometimes associated with Ostracods and Elphidium crispum at 
the Illigh site, specifically in levels ILL-P12 and ILL-Q1.
DOI: 10.17632/kgyms46wkv
title: LINF_130005700

description: mitochondrial DNA polymerase I protein B | PoliB; Leishmania infantum
DOI: 10.17632/w4rnfjvbsz
title: Oulu collaboration

description: Collaborating institutions with Oulu in different perspectives
DOI: 10.17632/5k9v3vb88h
title: Palmistichus elaeisis (HYMENOPTERA: EULOPHIDAE) REARING IN Tenebrio molitor (COLEOPTERA: TENEBRIONIDAE) SUBMITTED TO DIFFERENT DIETS

description: Palmistichus elaeisis (HYMENOPTERA: EULOPHIDAE) REARING IN Tenebrio molitor (COLEOPTERA: TENEBRIONIDAE) SUBMITTED TO DIFFERENT DIETS
DOI: 10.17632/67sgk7pjnj
title: LINF_240021500

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/dntxznw46f
title: 2002-2010 coarse unprocessed yearly TAPS surveys - Tsimane' Indigenous People Amazon

description: This data set is composed of 8 folders for the surveys of 2002 and 2003, 2004-2010. Each folder contains the unprocessed ACCESS dataset + the surveys used each year. The processed, clean datasets are available in several public repositories and have been made available several journal publications as well.
DOI: 10.17632/tdv7n6kvc7
title: Does volunteering increase employment opportunities? Dataset

description: This file contains the data to be able to replicate the work on the paper: Does volunteering increase employment opportunities? An experimental approach. Table and graph.
DOI: 10.17632/xjkw6ct8rk
title: Dermoscopic features of Stevens–Johnson syndrome and toxic epidermal necrolysis: A retrospective cohort study - Supplementary Materials

description: Supplemental Figure 1. The clinical and dermoscopic pictures of patients with Stevens–Johnson syndrome and maculopapular exanthema
DOI: 10.17632/z2zrsnbhn8
title: Data for: Developing boron isotopes to elucidate shale weathering

description: Attached is the data used for the boron analysis presented in this manuscript.
DOI: 10.17632/z9n76fgpnm
title: Data for: The effect of sample storage, rearing time, and sunlight, on calcein mark retention in Lake trout.

description: Luminosity scores of the lake trout in experiment 1
DOI: 10.17632/w57h2hrftt
title: Photo-tunable Protein Nitration by Sensitizer Tris(bipyridine)-Ruthenium(II) Chloride complex_Glu-C digestion Dataset

description: Post-translational modifications of proteins are a diverse source of variability that impacts on their functions, localization, regulation, and lifetime; and oxidative modifications are usually associated to pathological and degenerative conditions. Photosensitizers have been employed to promote oxidative modifications and model molecular aspects of diseases. Therefore, we provide the MS/MS raw data from the application of the novel light-controlled Ru(bpy)3+2/APS/NaNO2 system to nitrate four different model proteins. Each protein dataset contains raw data from treated and untreated samples.
DOI: 10.17632/2g5r6dy5z8
title: Predictive factors for prospective falls and protective effect of group exercising in older adults

description: Dataset of the project: Predictive factors for prospective falls and protective effect of group exercising in older adults