cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3777797_d6.v1
title: Additional file 6: of Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

description: Supplemental Information. Figure S1A. Lund-MacKay scores associated with disease state. No differences were observed between CRS, CRS+A or CRS+CF patients; B. CRS-CF patients are significantly younger than CRS+A patients (ANOVA, Tukey’s p = 0.041); however, no differences in age were observed for pairwise comparisons between the other groups (p &gt; 0.05, Tukey’s post hoc test). Figure S2A. PCoA of an unweighted UniFrac distance matrix colored by DSI-IIIb and healthy (PERMANOVA p = 0.001, 18.2% variation explained); B. PCoA of weighted UniFrac distance matrix after dominant sequence reads associated with the dominant family in each sample were removed demonstrating that DS still significantly explains variation in community composition despite removal of the dominant taxon from each sample (PERMANOVA p = 0.001, 17.6% variation explained). Figure S3A. Laplace model fit demonstrates three distinct Dirichlet multinomial mixtures groups. B. Hierarchical cluster analysis using a weighted-UniFrac distance matrix showing that microbiomes enriched in Corynebacteriaceae forms a distinct cluster (au p = 100). Heatmap shows relative abundance of the bacterial general that comprise &gt;90% of the total sequence reads. C. Reciprocal relationship between Corynebacteriaceae and Staphylococcaceae. Figure S4. PICRUSt-predicted functional variation across microbial Dirichlet states shows significant functional differences A. PCoA of Canberra distance matrix; PERMANOVA p = 0.001, 21.7% of variation explained) B. PCoA of Bray-Curtis distance matrix; PERMANOVA p = 0.001, 22.0% of variation explained). Figure S5. Expression levels of all host immune genes measured by QPCR (*indicates Kruskal-Wallis p
DOI: 10.6084/m9.figshare.c.3777797_d6
title: Additional file 6: of Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

description: Supplemental Information. Figure S1A. Lund-MacKay scores associated with disease state. No differences were observed between CRS, CRS+A or CRS+CF patients; B. CRS-CF patients are significantly younger than CRS+A patients (ANOVA, Tukey’s p = 0.041); however, no differences in age were observed for pairwise comparisons between the other groups (p &gt; 0.05, Tukey’s post hoc test). Figure S2A. PCoA of an unweighted UniFrac distance matrix colored by DSI-IIIb and healthy (PERMANOVA p = 0.001, 18.2% variation explained); B. PCoA of weighted UniFrac distance matrix after dominant sequence reads associated with the dominant family in each sample were removed demonstrating that DS still significantly explains variation in community composition despite removal of the dominant taxon from each sample (PERMANOVA p = 0.001, 17.6% variation explained). Figure S3A. Laplace model fit demonstrates three distinct Dirichlet multinomial mixtures groups. B. Hierarchical cluster analysis using a weighted-UniFrac distance matrix showing that microbiomes enriched in Corynebacteriaceae forms a distinct cluster (au p = 100). Heatmap shows relative abundance of the bacterial general that comprise &gt;90% of the total sequence reads. C. Reciprocal relationship between Corynebacteriaceae and Staphylococcaceae. Figure S4. PICRUSt-predicted functional variation across microbial Dirichlet states shows significant functional differences A. PCoA of Canberra distance matrix; PERMANOVA p = 0.001, 21.7% of variation explained) B. PCoA of Bray-Curtis distance matrix; PERMANOVA p = 0.001, 22.0% of variation explained). Figure S5. Expression levels of all host immune genes measured by QPCR (*indicates Kruskal-Wallis p
DOI: 10.6084/m9.figshare.c.3777797_d7.v1
title: Additional file 7: of Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

description: Nearest Taxon Sequence Index (NTSI) scores for PICRUSt predictions. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3777818_d1.v1
title: MOESM1 of Whole blood gene expression in adolescent chronic fatigue syndrome: an exploratory cross-sectional study suggesting altered B cell differentiation and survival

description: Additional file 1: Table S1. Primer names and sequences for the RT-qPCR experiments.
DOI: 10.6084/m9.figshare.c.3777797_d7
title: Additional file 7: of Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

description: Nearest Taxon Sequence Index (NTSI) scores for PICRUSt predictions. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3777818_d1
title: MOESM1 of Whole blood gene expression in adolescent chronic fatigue syndrome: an exploratory cross-sectional study suggesting altered B cell differentiation and survival

description: Additional file 1: Table S1. Primer names and sequences for the RT-qPCR experiments.
DOI: 10.6084/m9.figshare.c.3777818_d2.v1
title: MOESM2 of Whole blood gene expression in adolescent chronic fatigue syndrome: an exploratory cross-sectional study suggesting altered B cell differentiation and survival

description: Additional file 2: Table S2. Background characteristics of the chronic fatigue syndrome (CFS) group and the healthy control (HC) group in the present study compared with the characteristics of all CFS patients and HC in the NorCAPITAL dataset.
DOI: 10.6084/m9.figshare.c.3778541_d5
title: Additional file 2: of PERK induces resistance to cell death elicited by endoplasmic reticulum stress and chemotherapy

description: Primers used in qRT-PCR experiments. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3778541_d9.v1
title: Additional file 6: of PERK induces resistance to cell death elicited by endoplasmic reticulum stress and chemotherapy

description: Expression of genes involved in the UPR in HT29, HT29/Tun and HT29/MDR cells. ERAD: ER-associated degradation; UPR: unfolded protein response; ERQC: ER-quality control. Fold-Change (2^(− Delta Delta Ct)) is the normalized gene expression (2^(− Delta Ct)) in HT29/Tun or HT29/MDR cells, divided the normalized gene expression (2^(− Delta Ct)) in HT29 cells (n = 4), where Ct is the threshold cycle in qRT-PCR. Fold-change values greater than 1 indicate up-regulation, fold-change values less than 1 indicate down-regulation. The p values are calculated based on a Student’s t-test of the replicate 2^(− Delta Ct) values for each gene. p
DOI: 10.15468/dl.xz86dk
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astrapogon puncticulatus (Poey, 1867)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 144 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038914-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3778610_d5.v1
title: Additional file 5: Table S5. of HLAscan: genotyping of the HLA region using next-generation sequencing data

description: Prediction of HLA types and calculation of specificity and sensitivity at different depths in 10 samples from 1000G datasets. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3778619_d1.v1
title: Additional file 1: Code S6. of In your face: the biased judgement of fear-anger expressions in violent offenders

description: Main analysis of morph experiment. (HTML 16207 kb)
DOI: 10.6084/m9.figshare.c.3778619_d1
title: Additional file 1: Code S6. of In your face: the biased judgement of fear-anger expressions in violent offenders

description: Main analysis of morph experiment. (HTML 16207 kb)
DOI: 10.6084/m9.figshare.c.3778610_d5
title: Additional file 5: Table S5. of HLAscan: genotyping of the HLA region using next-generation sequencing data

description: Prediction of HLA types and calculation of specificity and sensitivity at different depths in 10 samples from 1000G datasets. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3778619_d2.v1
title: Additional file 2: Code S7. of In your face: the biased judgement of fear-anger expressions in violent offenders

description: Psychophysical analyses of morph experiment (HTML 24228 kb)
DOI: 10.6084/m9.figshare.c.3778610_d6.v1
title: Additional file 6: Table S6. of HLAscan: genotyping of the HLA region using next-generation sequencing data

description: Prediction of HLA types and calculation of specificity and sensitivity at different score cutoffs in 10 samples from 1000G datasets. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3778619_d2
title: Additional file 2: Code S7. of In your face: the biased judgement of fear-anger expressions in violent offenders

description: Psychophysical analyses of morph experiment (HTML 24228 kb)
DOI: 10.6084/m9.figshare.c.3778610_d6
title: Additional file 6: Table S6. of HLAscan: genotyping of the HLA region using next-generation sequencing data

description: Prediction of HLA types and calculation of specificity and sensitivity at different score cutoffs in 10 samples from 1000G datasets. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3778619_d3.v1
title: Additional file 3: Code S1. of In your face: the biased judgement of fear-anger expressions in violent offenders

description: Experiment code in PsychoPy. (7Z 2705 kb)
DOI: 10.6084/m9.figshare.c.3778619_d3
title: Additional file 3: Code S1. of In your face: the biased judgement of fear-anger expressions in violent offenders

description: Experiment code in PsychoPy. (7Z 2705 kb)
DOI: 10.6084/m9.figshare.c.3778676_d4.v1
title: Additional file 4: of A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice

description: Table S3. Growth traits of IR24 and IL-hairy grown under the field at the tilling stage. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3778694_d1.v1
title: Additional file 1: of Early morning urine collection to improve urinary lateral flow LAM assay sensitivity in hospitalised patients with HIV-TB co-infection

description: Data base incampassing all anaysed raw data. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3778691_d1
title: MOESM10 of Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

description: Additional file 10: Table S9. PCR primers sequences for conventional bisulphite sequencing of selected CGIs.
DOI: 10.6084/m9.figshare.c.3778676_d4
title: Additional file 4: of A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice

description: Table S3. Growth traits of IR24 and IL-hairy grown under the field at the tilling stage. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3778691_d2.v1
title: MOESM1 of Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

description: Additional file 1: Table S1. Sequencing statistics for PBAT and RRBS libraries from size-selected oocytes.
DOI: 10.6084/m9.figshare.c.3778694_d1
title: Additional file 1: of Early morning urine collection to improve urinary lateral flow LAM assay sensitivity in hospitalised patients with HIV-TB co-infection

description: Data base incampassing all anaysed raw data. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3778691_d2
title: MOESM1 of Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

description: Additional file 1: Table S1. Sequencing statistics for PBAT and RRBS libraries from size-selected oocytes.
DOI: 10.6084/m9.figshare.c.3778676_d5.v1
title: Additional file 5: of A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice

description: Table S4. Gene annotation by RAP-DB in BKL region. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3778691_d3.v1
title: MOESM2 of Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

description: Additional file 2: Table S2. Methylation levels of all CpGs and various genomic features that become methylated in GV oocytes in NGO, 60–65 µm and GV oocytes.
DOI: 10.6084/m9.figshare.c.3778676_d5
title: Additional file 5: of A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice

description: Table S4. Gene annotation by RAP-DB in BKL region. (XLSX 29Â kb)
DOI: 10.15468/dl.7sjeax
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Silene multicaulis subsp. multicaulis, Silene dalmatica Scheele, Silene leucojifolia Orsini ex Rohrb., Silene inaperta Sm., Silene orsiniana Rchb., Silene orsiniana Rchb. ex Ces., Silene multicaulis subsp. cretica Melzh., Silene kitaibelii Vis., Silene multicaulis var. megaspilaea Boiss., Silene leucojifolia Orsini, Silene saxifraga subsp. multicaulis (Guss.) Arcang., Silene megaspilaea (Boiss.) Rohrb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038915-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3778691_d3
title: MOESM2 of Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

description: Additional file 2: Table S2. Methylation levels of all CpGs and various genomic features that become methylated in GV oocytes in NGO, 60–65 µm and GV oocytes.
DOI: 10.6084/m9.figshare.c.3778691_d5.v1
title: MOESM4 of Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

description: Additional file 4: Table S3. CG, CHG and CHH methylation levels in NGO, 60–65 µm and GV oocytes.
DOI: 10.6084/m9.figshare.c.3778691_d9.v1
title: MOESM8 of Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

description: Additional file 8: Table S7. Output from DREME analysis of sequence motifs differentially represented in early- and late-methylating CpG islands.
DOI: 10.6084/m9.figshare.c.3778691_d5
title: MOESM4 of Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

description: Additional file 4: Table S3. CG, CHG and CHH methylation levels in NGO, 60–65 µm and GV oocytes.
DOI: 10.5517/ccdc.csd.cc28c34x
title: CCDC 2096038: Experimental Crystal Structure Determination

description: Related Article: Tainára Orlando, Gustavo Henrique Weimer, Paulo Roberto dos Santos Salbego, Alberto Martinez-Cuezva, Jose Berna, Marcos Antonio Pinto Martins|2024|Chem.-Eur.J.|30|e202403276|doi:10.1002/chem.202403276
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.qtkq3r
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astrapogon stellatus (Cope, 1867)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 39 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038917-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rwm5y
title: Occurrence Download

description: A dataset containing 24284 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Weed plants of the European part of Russia"
 ]
}

 The dataset includes 24284 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038916-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3780446_d2.v1
title: Additional file 2: Table S2. of Attenuating immune pathology using a microbial-based intervention in a mouse model of cigarette smoke-induced lung inflammation

description: Soluble mediator analysis in serum following placebo and KB treatment in room air or cigarette smoke-exposed groups. * p
DOI: 10.6084/m9.figshare.c.3780446_d2
title: Additional file 2: Table S2. of Attenuating immune pathology using a microbial-based intervention in a mouse model of cigarette smoke-induced lung inflammation

description: Soluble mediator analysis in serum following placebo and KB treatment in room air or cigarette smoke-exposed groups. * p
DOI: 10.6084/m9.figshare.c.3780449_d2.v1
title: Additional file 11: of The midgut transcriptome of Aedes aegypti fed with saline or protein meals containing chikungunya virus reveals genes potentially involved in viral midgut escape

description: Primers used for qRT-PCR and recombinant protein expressions. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3780449_d2
title: Additional file 11: of The midgut transcriptome of Aedes aegypti fed with saline or protein meals containing chikungunya virus reveals genes potentially involved in viral midgut escape

description: Primers used for qRT-PCR and recombinant protein expressions. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3780449_d9.v1
title: Additional file 7: of The midgut transcriptome of Aedes aegypti fed with saline or protein meals containing chikungunya virus reveals genes potentially involved in viral midgut escape

description: DE genes in response to SM/PM feeding compared to sugarfed control samples. (XLSX 1834 kb)
DOI: 10.6084/m9.figshare.c.3780449_d9
title: Additional file 7: of The midgut transcriptome of Aedes aegypti fed with saline or protein meals containing chikungunya virus reveals genes potentially involved in viral midgut escape

description: DE genes in response to SM/PM feeding compared to sugarfed control samples. (XLSX 1834 kb)
DOI: 10.15468/dl.v4n7vy
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Silene pendula L., Silene pendula var. ruberrima Barr & Sugden, Silene barbata E.Vilm., Silene cisplatensis Cambess., Silene cretica E.Vilm., Silene crispa Moench, Silene graeca E.Vilm., Silene rosea E.Vilm.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 210 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038919-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ze2q7
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astronesthes niger Richardson, 1845",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 39 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038918-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3780518_d2.v1
title: MOESM2 of Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013

description: Additional file 2: Table S1. Additional Tables.
DOI: 10.6084/m9.figshare.c.3780449_d10.v1
title: Additional file 8: of The midgut transcriptome of Aedes aegypti fed with saline or protein meals containing chikungunya virus reveals genes potentially involved in viral midgut escape

description: GO of DE genes upregulated by SM and PM. (XLSX 830 kb)
DOI: 10.6084/m9.figshare.c.3780449_d10
title: Additional file 8: of The midgut transcriptome of Aedes aegypti fed with saline or protein meals containing chikungunya virus reveals genes potentially involved in viral midgut escape

description: GO of DE genes upregulated by SM and PM. (XLSX 830 kb)
DOI: 10.6084/m9.figshare.c.3780518_d2
title: MOESM2 of Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013

description: Additional file 2: Table S1. Additional Tables.
DOI: 10.6084/m9.figshare.c.3781331_d1.v1
title: MOESM1 of Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies

description: Additional file 1: TableÂ S1. Membrane proteins in all 3 iTRAQs experiments.
DOI: 10.6084/m9.figshare.c.3781331_d1
title: MOESM1 of Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies

description: Additional file 1: TableÂ S1. Membrane proteins in all 3 iTRAQs experiments.
DOI: 10.6084/m9.figshare.c.3781331_d2.v1
title: MOESM2 of Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies

description: Additional file 2: TableÂ S2. One of iTRAQ-MS raw data file.
DOI: 10.6084/m9.figshare.c.3781337_d1.v1
title: Additional file 1: Table S1. of Mouse mammary tumour virus (MMTV) and human breast cancer with neuroendocrine differentiation

description: Selected MMTV positive human breast cancers. Synaptophysin and chromogranin expression. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3781331_d2
title: MOESM2 of Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies

description: Additional file 2: TableÂ S2. One of iTRAQ-MS raw data file.
DOI: 10.6084/m9.figshare.c.3781337_d1
title: Additional file 1: Table S1. of Mouse mammary tumour virus (MMTV) and human breast cancer with neuroendocrine differentiation

description: Selected MMTV positive human breast cancers. Synaptophysin and chromogranin expression. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3781331_d3.v1
title: MOESM3 of Identification of protein targets in cerebral endothelial cells for brain arteriovenous malformation (AVMs) molecular therapies

description: Additional file 3: TableÂ S3. All proteins identified in 2 MSEs.
DOI: 10.6084/m9.figshare.c.3781337_d2.v1
title: Additional file 2: Table S2. of Mouse mammary tumour virus (MMTV) and human breast cancer with neuroendocrine differentiation

description: Mouse mammary tumours. Synaptophysin and chromogranin expression (XLSX 10 kb)
DOI: 10.17183/s184200100
title: Levé S184200100

description: S184200100
DOI: 10.17183/s187700100
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DOI: 10.17183/s192000100
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DOI: 10.17183/s193100500
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DOI: 10.17183/s193900800
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DOI: 10.17183/s195700300
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DOI: 10.17183/s196700200
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DOI: 10.17183/s196700400
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DOI: 10.17183/s198500800
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DOI: 10.17183/s198702000
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DOI: 10.17183/s198704800
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DOI: 10.17183/s198900700
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DOI: 10.17183/s199000900
title: Levé S199000900

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DOI: 10.17183/s199100600
title: Levé S199100600

description: S199100600