cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12280004.v2
title: Phyloseq objects

description: Phyloseq objects provided<br><br>“Reduced” refers to a data sets reduced (from the full routine biochemical profiling) to the variables that were valid to use and of interest<br><br>“dc” refers to manual contaminant check and removal in the oral and nasal samples (in addition to contaminant removal with “decontam”)<br><br>FECES: <br>ps_all_allo_5_core_reduced_vars: First object for feces samples, absolute count data<br> Used in the alpha diversity script as initial input<br>ps_all_allo_5_core1_reduced: Second object for feces samples, absolute count data, alpha diversity measures calculated and added to sample data<br> Used as initial input for the multivariate script, in the ML script for the boxplots, and in LDA script<br>ps_all_allo_5_core1_reduced_vsd: Third object for feces samples, alpha diversity measures calculated and added to sample data, variance stabilized (vsd) count data<br> Used in the multivariate and ML scripts<br><br>ORAL:<br>ps_all_allo_oral_5_core_dc_reduced_vars: First object for oral samples, absolute count data<br> Used in the alpha diversity script as initial input<br><br>ps_all_allo_oral_5_core_dc1_reduced: Second object for oral samples, absolute count data, alpha diversity measures calculated and added to sample data<br> Used as initial input for the multivariate script, in the ML script for the boxplots, and in LDA script<br>ps_all_allo_oral_5_core_dc1_reduced_vsd: First object for oral samples, absolute count data<br> Used in the multivariate and ML scripts<br><br><br>NASAL: <br><br>ps_all_allo_nasal_5_core_dc_reduced_vars: First object for nasal samples, absolute count data<br> Used in the alpha diversity script as initial input<br><br>ps_all_allo_nasal_5_core_dc1_reduced: Second object for nasal samples, absolute count data, alpha diversity measures calculated and added to sample data<br> Used as initial input for the multivariate script, in the ML script for the boxplots, and in LDA script<br>ps_all_allo_nasal_5_core_dc1_reduced_vsd: First object for nasal samples, absolute count data<br> Used in the multivariate and ML scripts
DOI: 10.6084/m9.figshare.8097992.v2
title: Graphs of Materials Project 20190401

description: The `mp.2019.04.01.json.zip` data set contains 133420 graph-target pairs for structures materials project used to train the latest megnet formation energy models. <br>The whole data is a list with each item being a dictionary. The keys for the dictionary are - "material_id": the material id in materials project- "graph": the graph dictionary computed with megnet, cutoff radius is 5 A- "formation_energy_per_atom": the formation energy per atom (eV/atom)- "structure": cif string of the structure<br>The `mp_elastic.2019.04.01.json.zip` contains a list of length 12179, where each item is a dictionary with the following keys- "material_id"- "graph"- "K": bulk modulus- "G": shear modulus <br>
DOI: 10.6084/m9.figshare.13247306.v1
title: Images.zip

description: A Dataset for Moving Object Detection.
DOI: 10.6084/m9.figshare.6392069.v1
title: code_and_data_Zebrafish.tar.gz

description: Zebrafish data and binaries<br>
DOI: 10.6084/m9.figshare.663676.v2
title: Managing enterprise value example food and beverage companies

description: The report presents the opportunity to determine the value of the company using a gauge of economic value added.
DOI: 10.6084/m9.figshare.11822121.v1
title: Towards a national-scale assessment of the subaqueous mass movement hazard in Canada

description: The 1266 subaqueous slide locations documented in the geodatabase discussed in this paper. The catalogue is a work in progress and, to date, includes only previously published deposits/events.
DOI: 10.6084/m9.figshare.16656805.v1
title: Supplementary Material for: Implementation of the MASK-Air® App for Rhinitis and Asthma in Older Adults: MASK@Puglia Pilot Study

description: <b><i>Introduction:</i></b> MASK-air® is an app whose aim is to reduce the global burden of allergic rhinitis and asthma. A transfer of innovative practices was performed to disseminate and implement MASK-air® in European regions. The aim of the study was to examine the implementation of the MASK-air® app in older adults of the Puglia TWINNING in order to investigate (i) the rate of acceptance in this population, (ii) the reasons for refusal and (iii) the evaluation of the app after its use. <b><i>Methods:</i></b> All consecutive geriatric patients aged between 65 and 90 years were included by the outpatient clinic of the Bari Geriatric Immunoallergology Unit. After a 1-h training session, older adults used the app for 6 months. A 6-item questionnaire was developed by our unit to evaluate the impact of the app on the management of the disease and its treatment. <b><i>Results:</i></b> Among the 174 recruited patients, 102 accepted to use the app (mean age, SD: 72.4 ± 4.6 years), 6 were lost to follow-up, and 63 had a low education level. The reasons given not to use the app included lack of interest (11%), lack of access to a smartphone or tablet (53%), low computer literacy (28%), and distrust (8%). At follow-up, the overall satisfaction was high (89%), the patient considered MASK-air® “advantageous” (95%), compliance to treatment was improved (81%), and the rate of loss to follow-up had decreased to 6%. <b><i>Conclusion:</i></b> Older adults with a low level of education can use the MASK-air® app after a short training session.
DOI: 10.6084/m9.figshare.25266364.v1
title: Untitled Item

description: Raw heart rate data for American lobster larvae exposed to polycyclic aromatic compounds. The data is associated with a manuscript titled: Exposure to individual polycyclic aromatic compounds impairs the cardiac performance of American lobster (<i>Homarus americanus</i>) larvae.
DOI: 10.6084/m9.figshare.1241571.v1
title: Training data set user for training EpiceaUntangler

description: This file contains a dataset of untangled code changes, created with the help of two developers who accurately split their code changes into self contained tasks over a period of four months. The developers worked in Pharo [1], and their code changes were recorded using Epicea [2]. The format of the files is STON [3], which is very similar to JSON. Contact: tinchodias@gmail.com [1]: http://pharo.org/ [2]: http://smalltalkhub.com/#!/~MartinDias/Epicea [3]: https://github.com/svenvc/ston/blob/master/ston-paper.md
DOI: 10.6084/m9.figshare.28918946.v1
title: Supplementary Material for: Impacts of air pollution on dynamic lung function in asthma patients: the modifying effect of phenotype susceptibility and possible relationship with airway microbiota

description: Introduction
Air pollution and meteorological factors have consistently been reported to adversely affect asthma patients. 
Methods
We used a linear mixed-effects model to explore the relationship between air pollution and the dynamic lung function of 58 adult asthma patients with different asthma phenotypes in Beijing, China. We conducted a follow-up panel study of these patients with repeated lung function tests every day in the morning and evening by supervised spirometry from November 2020 to December 2021. Induced sputum from these subjects was collected and analyzed for the microbiome composition and associations between microbiome and lung function indices.
Results
We found that a 10 μg/m3 increase in PM2.5 was associated with decreases 0.79% in FEF25-75 (95% CI: 0.31 ~ 3.25), a range of decreases of 0.76%~0.83% PEF, 1.58%~1.93% for FEF25 and 1.79%~2.31% for FEF50 in the morning or evening on different lag days.
Compared with the PM2.5 effect in the fall, PM2.5 in spring and winter had significant effects on FEV3, FEsV6, and FVC. O3 had significant effects on FEF25, FEF50, FEV3, FEsV6, FVC and FEV1/FEV1-predicted in summer. Significant reduction of lung function indices in range of 0.31% to 1.29% reduction for lung function indices associated with the summer Rh or spring Rh compared with fall Rh.
PM2.5 had a larger adverse effect on Th2 phenotype asthmatic patients than on non-Th2 phenotype asthmatic patients. For a 10 μg/m3 increase in PM2.5, there was a 0.75% (95% CI: 0.026%, 1.52%), 0.70% (95% CI: 0.010%, 1.50%),0.75% (95% CI: 0.013%, 1.49%) and 0.37 L (95% CI: 0.062%, 0.80%) on FEF50 (evening), FEF50 (morning), FEF75 (evening) and FEV1 (morning), respectively for the Th2 phenotype compared with those for the non-Th2 phenotype. 
Significant differences in the sputum microbiome composition were observed between the two inflammatory phenotypes. The linear relationships between sputum microbiome and lung function indices were observed.
Conclusion
Our study demonstrated the possibility of phenotype–environment interactions.
DOI: 10.6084/m9.figshare.23796597.v4
title: The analysis table of titles, topics, and sentences in indigenous newspapers in North Sumatra during the colonial period

description: This table contains information about the title, topic and analysis sentences of the article which wrote about the struggle for Indonesian independence in indigenous newspapers in North Sumatra (1916-1925)
DOI: 10.6084/m9.figshare.5601652.v1
title: ECG signals (1000 fragments)

description: For research purposes, the ECG signals were obtained from the PhysioNet service (http://www.physionet.org) from the MIT-BIH Arrhythmia database. The created database with ECG signals is described below. 1) The ECG signals were from 45 patients: 19 female (age: 23-89) and 26 male (age: 32-89). 2) The ECG signals contained 17 classes: normal sinus rhythm, pacemaker rhythm, and 15 types of cardiac dysfunctions (for each of which at least 10 signal fragments were collected). 3) All ECG signals were recorded at a sampling frequency of 360 [Hz] and a gain of 200 [adu / mV]. 4) For the analysis, 1000, 10-second (3600 samples) fragments of the ECG signal (not overlapping) were randomly selected. 5) Only signals derived from one lead, the MLII, were used. 6) Data are in mat format (Matlab).
DOI: 10.6084/m9.figshare.12170445.v1
title: Raw data.zip

description: Data were segmented into 1200ms duration epochs, including a 200ms pre-stimulus baseline recording. Regression was performed in order to remove the horizontal and vertical electrooculograms (EOGs) from the Analyzer 2.0 system, using a 0.01-30 Hz band pass filter. Trials with EOG artifacts (mean EOG voltage exceeding ± 80 mV), and those contaminated with artifacts because of amplifier clipping, bursts of electromyography activity, or peak-to-peak deflection exceeding ± 80 mV were excluded from averaging.
DOI: 10.6084/m9.figshare.11744433.v2
title: test.bed

description: bedfile
DOI: 10.6084/m9.figshare.1210788.v4
title: Data for: Müllerian mimicry as a result of codivergence between velvet ants and spider wasps

description: Distribution and morphological data for Psorthaspis spider wasps used by Rodriguez et al. 2014
DOI: 10.6084/m9.figshare.5101102.v1
title: Celtis australis chorology

description: Distribution map of nettle tree (Celtis australis)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geodatabases and scientific literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix “plg”), which define continuous areas of occupancy of the species, and with point features (name suffix “pnt”), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix “syn”).<br>All polygon borders delimiting the range are generalized across the mainland and sea boundaries, and not clipped to a specific coastline. This offers the possibility to mask sea areas, or to clip and extract the terrestrial range parts using GIS data layers of the users’ choice. <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.15468/dl.ck97pm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 19.8496,26.9648 19.8496,26.9648 10.8496,35.9648 10.8496,35.9648 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013459-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.28330523.v1
title: Whole-genome data

description: This dataset contains the complete genome analyses of <i>Synechococcus</i> WH7803 wild-type strains (WT) and WH7803 mutants (MT).
DOI: 10.6084/m9.figshare.25878574.v1
title: <i>Gas1</i>-CreER+, RT/+ mice SVZ scRNA-seq and codes

description: Quiescent neural stem cells (qNSCs) in the adult mouse subventricular zone (SVZ) normally have limited capacity to generate glia. Gliogenic domains are present in both dorsal and ventral SVZ, with the ventral region featuring a subpopulation of Gli1<sup>+</sup> qNSCs. In dorsal SVZ, however, the molecular identity and developmental origin of oligodendrogenic qNSCs remains elusive. Here, through single-cell analysis and lineage tracing, we identify an undefined subpopulation of Gas1<sup>high</sup> qNSCs in dorsal SVZ, distinct from Gli1<sup>+</sup> qNSCs. These cells originate from embryonic Gas1<sup>high</sup> dorsal radial glia, and persist into the aged SVZ. Remarkably, they are bipotent and more gliogenic than Gas1<sup>low/-</sup> qNSCs, continuously generating oligodendrocytes in the adult and aged brain, and can be mobilized for myelin repair upon demyelination. Together, our study uncovers a subpopulation of dorsally-derived, bipotent long-term qNSCs in the adult and aged SVZ with enhanced gliogenic potential, shedding light on the heterogeneity and plasticity of NSCs in normal, aging and disease conditions.
DOI: 10.4121/uuid:598b19d1-df64-493e-991a-d8d655dac3ea
title: Real-world VRP benchmark data with realistic non-standard constraints - input data and results

description: This dataset contains 9 Excel (xls) files that can be used as a new benchmark data for the solving of real-world vehicle routing problems with realistic non-standard constraints. All data are real and obtained experimentally by using VRP algorithm on production environment in one of the biggest distribution company in Bosnia and Herzegovina.
DOI: 10.6084/m9.figshare.13303253.v1
title: VN_ICU_unmasked.tar.gz

description: Filtered de novo assembly of all species (Escherichia coli, Klebsiella pneumoniae and Acinetobacter baumannii) from 6-month study of two ICUs in Hanoi, Vietnam.
DOI: 10.6084/m9.figshare.20296677.v1
title: Geochemistry and modeling data for slightly altered basalts of IODP Site U1434

description: This dataset serves for manuscript " Iron isotopic variations in oceanic crust basalts caused by low-temperature seawater alteration ". Three tables can be found in the dataset, including in situ elemental data for rock surface, whole-rock geochemical data for slightly altered basalts, and results of seawater-rock interation modeling. By using these data, we propose a two-stage alteration model during seafloor weathering to expain the Fe isotopic variations of surface basalts of oceanic crust.
DOI: 10.6084/m9.figshare.28742213.v1
title: Data

description: The data of the resarch has been included.
DOI: 10.6084/m9.figshare.26357017.v4
title: Database dengue-forecast-Brazil

description: Related to the paper 'Spatio-Temporal Dynamics and Climate Change Scenarios Forecast of Dengue Incidence in Brazil'. Preprint available at: https://doi.org/10.1101/2024.07.22.24310334'data.csv': The database used for running the models in the cited paper.<br>'data_dictionary.csv': The dictionary for the 'data.csv' file.<br>
DOI: 10.6084/m9.figshare.12738296.v1
title: Table S1 from Ants resort to heuristics when facing relational-learning tasks they cannot solve

description: Sequence of odours used for both ‘same’ and ‘difference’ treatments. On each visit, ants encountered a different unique odour pair. The sample odour on the stem had to either be matched to the target odour on one arm (‘same’) or non-matched (‘difference’). This table shows the ‘difference’ treatment, in which reward was placed on the end of the arm with an odour other than the stem (non-match rewarded). In the ‘same’ treatment, the succession of pairs was identical, but reward was on the arm with the same odour as the stem. Half of the ants started with L (left), half with R (right, shown here).
DOI: 10.6084/m9.figshare.22341070.v4
title: Chick Embryo Segmented Region Length | Datasets used to infer individual somite period and length with systematic measurements of the whole embryo segmented region.

description: <b>Data description </b>| Chick Embryo Segmented Region Length Measurements.<b>Brief methodology description</b> | Length measurements were performed in frames from live imaging taken at 3 minute intervals, using Axiovision Se64 Rel 4.9.1 (Carl Zeiss) or Zen 2.5 (blue edition, Carl Zeiss). In each frame, measurements were taken from the anterior border of the first somite until the last completely formed cleft. A somitic cleft was considered completely formed only when it was clearly visible from its axial to lateral limits. We conducted a total of 2836 measurements, corresponding to 13 different chicken embryos, in stages HH7 to HH10 (corresponding to somites 1 to 10), and HH11+ to HH13+ (corresponding to somites 14 to 20). To minimize measurement biases, at least two different operators performed independent measurements.<b>Data analysis R Package</b> | These data were analysed using the R package: <i>SomiteExplorerR</i> deposited in GitHub (https://github.com/iduarte/SomiteExplorerR).<b>Citation</b> | These data are presented and discussed in the scientific paper:Ana Cristina Maia-Fernandes, Ana Martins-Jesus, Nísia Borralho-Martins, Tomás Pais-de-Azevedo, Ramiro Magno, Isabel Duarte, Raquel P. Andrade.<i> </i><i>Spatio-Temporal Dynamics of Early Somite Segmentation in the Chicken Embryo.</i><i> </i>2023. (<b>doi:</b> https://doi.org/10.1371/journal.pone.0297853). <br>
DOI: 10.6084/m9.figshare.16973665.v1
title: EffectorDB

description: A database of HMMER3 formatted HMMs of effectors from Fungi and Stramenopiles/Oomycetes.<br>Details of all effectors are in the effectordb.tsv file.<br>Alignments used to construct the HMMs are in the stockholm formatted `.sto` file.Alignments were constructed by searching mature (signal peptide removed) protein sequence against all of Uniref 50 (release 2021_03), and the Fungal and Stramenopile subsets of Uniref 90.
DOI: 10.17632/xphc8ctxr3
title: Debugging the FUMILIM minimization package

description: The suggested package FUMILIM, based on famous FUMILI minimization package, has the following advantages. Unlimited number of parameters (multi-set tasks). Ability to work with multidimensional experimental points, described by a vector function. The preliminary scan is envisaged for complicated tasks. For heavy user's functions the parallel fit is envisaged with the help of OpenMP service. Multi-optional user interface, including the option to ignore wrong experimental points. The package contains popular intrinsic user's functions. All of them can be used without the definition of the parameter initial values. There is a package of fast track reconstruction programs for working with detectors, including drift chambers. The capacity of these programs is about of 106 tracks per second (at 2.8 GHz). In the corrected version a number of bugs is fixed. The service for multi-set tasks has been essentially expanded. Information support of poorly converged tasks and removing of wrong experimental points is expanded. All programs are written in FORTRAN-90.
DOI: 10.6084/m9.figshare.7330472.v1
title: Human Convalescent Serum Sample after WNV seroconversion.

description: Human Convalescent Serum Sample collected after WNV seroconversion.
DOI: 10.6084/m9.figshare.21455910.v3
title: Saliva corticosterone in the Domestic Rabbit (Oryctolagus cuniculus f. domestica)

description: Salivary corticosterone levels in domestic rabbits.
DOI: 10.6084/m9.figshare.1171204.v1
title: Intro Lab - Gender and Bag Type

description: Students were observed at various locations around York University on 16/9/14 at 3pm. Their gender and the type of bag they were using was recorded. Bags were recorded as being either backpacks or "Other" with "Other" including purses, messenger bags, duffel bags etc.
DOI: 10.6084/m9.figshare.1460747.v1
title: blast output format 6 lesson

description: This file includes blast output after performing filtering steps
DOI: 10.6084/m9.figshare.5008514.v2
title: MATLAB files from From arteries to boreholes: steady-state response of a poroelastic cylinder to fluid injection.

description: A suite of MATLAB functions that implement the analytical and numerical steady-state solutions described in the manuscript
DOI: 10.6084/m9.figshare.24024720.v1
title: Interview notes Beritelli 2023

description: This file contains all notes taken during interviews about travel decisions. 256 people were interviewed, each reporting about 2 trips with overnight stays and one day trip. The first columns describe the constituent parts of the trip (who, with whom, when, how long, where exactly, etc.). The other columns represent instances that were relevant to the trip decision. The last column notes whether advertising by a regional or national DMO played a role. This file is part of a forthcoming document by the same author entitled "How do leisure travel decisions come about?".
DOI: 10.6084/m9.figshare.25981909.v1
title: Ghana Cryptocurrency Awareness and Adoption Survey Data

description: The<i> </i>dataset presents responses from a survey assessing the level of awareness and adoption of cryptocurrency among college students and staff in a developing economy, specifically Ghana. The data was collected using a structured questionnaire administered through a snowball sampling technique, involving 989 students and staff from six Ghanaian universities. The survey data collection lasted three months between April and May 2022. The dataset comprises raw data available in SPSS (.sav), and Excel (.xlsx) formats with a codebook. It captures self-reported levels of awareness of blockchain technology and cryptocurrency, as well as various determinants of cryptocurrency adoption based on the Utility Theory and the Unified Theory of Acceptance and Use of Technology (UTAUT). The questionnaire was divided into three sections: awareness of blockchain and cryptocurrency, empirical data on drivers of cryptocurrency adoption, and demographic information of respondents. The dataset provides valuable insights into the factors influencing cryptocurrency adoption in a developing economy context. It is suitable for further multivariate analysis, including Structural Equation Modeling (SEM), multigroup analysis (MGA), and logistic regression analysis. The data allows for reuse in future research to explore trends and drivers of cryptocurrency adoption in similar contexts.
DOI: 10.6084/m9.figshare.c.3640040_d1.v1
title: Additional file 3: Table S3. of Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells

description: The list of annotated cell cycle genes and hematopoietic regulators used for PCA and the gene sets used for GSEA in this study. (XLSX 126 kb)