cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5vk6219/1
title: Filtered SNP

description: VCF file with two palm genera (Brahe and Washingtonia) merged. Only preliminary filtering was applied.
DOI: 10.5061/dryad.63m17n5/1
title: Data_TreeAges
DOI: 10.5061/dryad.63m17n5/2
title: Data_AgeTool
DOI: 10.5061/dryad.63m17n5/3
title: ReadMe_Data
DOI: 10.5061/dryad.9s1t9.1/3.1
title: Italy.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.9s1t9.1/4.1
title: Dinaric-Balkan.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.9s1t9.1/6.1
title: Northcentral_Europe.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.9s1t9.1/7.1
title: Ukrainian_Steppe.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.bp26v20/2
title: Trait_data

description: This spreadsheet contains trait data for all 5831 species of mammals that lived during the last ~130,000 years including both extant and extinct species. This data includes body mass, island endemicity, threat status, and rough measures of life habit and diet.
DOI: 10.5061/dryad.bp26v20/3
title: Synonymy_table_valid_species_only

description: This spreadsheet contains synonymies between the species used in PHYLACINE Version 1.2.0, previous versions of this database, and other popular databases like EltonTraits and IUCN. It also contains information on the phylogenetic placement of species in PHYLACINE. Only the 5831 species considered valid in PHYLACINE Version 1.2.0 are included.
DOI: 10.5061/dryad.bp26v20/4
title: Synonymy_table_with_unaccepted_species

description: This spreadsheet contains synonymies between the species used in PHYLACINE Version 1.2.0, previous versions of this database, and other popular databases like EltonTraits and IUCN. It also contains information on the phylogenetic placement of species in PHYLACINE. Unlike Synonymy_table_valid_species_only, this spreadsheet also contains species that were not accepted in PHYLACINE Version 1.2.0 but are accepted in other databases like EltonTraits and IUCN.
DOI: 10.5061/dryad.bp26v20/5
title: Complete_phylogeny

description: This nexus file contains the dated phylogeny of all 5831 mammal species that lived during the last ~130,000 years including both extant and extinct species. 1000 individual trees are included in the phylogeny to capture uncertainties in branching times and topology.
DOI: 10.5061/dryad.bp26v20/6
title: Small_phylogeny

description: This nexus file contains the dated phylogeny of 4253 mammal species that lived during the last ~130,000 years including both extant and extinct species. Unlike the Complete_phylogeny, this phylogeny only includes the 4253 mammal species that could be placed phylogenetically through genetic data or unambiguous taxonomic constraints. 1000 individual trees are included in the phylogeny to capture uncertainties in branching times and topology.
DOI: 10.5061/dryad.bp26v20/7
title: Current

description: This file contains rasters of the current geographic ranges for all 5831 mammal species that lived during the last ~130,000 years including both extant and extinct species.
DOI: 10.5061/dryad.bp26v20/8
title: Present_natural

description: This file contains rasters of the present natural geographic ranges for all 5831 mammal species that lived during the last ~130,000 years including both extant and extinct species. Present natural ranges represent counterfactual scenarios showing where species would live today without strong anthropogenic impacts on their ranges. We stress that the present natural ranges for extinct species are not the fossil ranges where species occurred in the Pleistocene but rather where the species would be expected to occur now given today's climate.
DOI: 10.5061/dryad.bp26v20/9
title: Spatial_metadata

description: This spreadsheet contains metadata describing the creation of range maps for all 5831 mammal species that lived during the last ~130,000 years including both extant and extinct species.
DOI: 10.5061/dryad.jr0d5h7/1
title: Chronogram in Newick Format

description: Newick formatted chronogram file resulting from fossil-calibrated BEAST analyses.
DOI: 10.5061/dryad.jr0d5h7/2
title: Chronogram in Nexus File Format

description: Nexus file formatted chronograph resulting from fossil-calibrated analysis in BEAST
DOI: 10.5061/dryad.jr0d5h7/3
title: Concatenated Nexus Alignment File

description: Nexus sequence alignment file with concatenated sequence data for the four loci employed in the study (ND1, BDNF, PTGER4, R35). Character block presented at the bottom of the file showing coding regions.
DOI: 10.5061/dryad.k6k2g1q/1
title: coluber dryad

description: Coluber constrictor island dwarfism data
DOI: 10.5061/dryad.k6k2g1q/2
title: elgaria dryad

description: Elgaria multicarinata island dwarfism data
DOI: 10.5061/dryad.k6k2g1q/3
title: pituophis dryad

description: Pituophis catenifer island dwarfism data
DOI: 10.5061/dryad.kc835.4/1.4
title: M6_v4.1_masked_PM.fa

description: Masked pseudomolecules of S. chacoense M6, containing 12 chromosomes
DOI: 10.5061/dryad.kc835.4/10.4
title: pasa_m6.hc.gene_models.repr.pep.fa

description: Protein sequences of representative models of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.4/3.4
title: short_summary_BUSCO_output.txt

description: Output file from running BUSCO on the genome assembly
DOI: 10.5061/dryad.kc835.4/4.4
title: full_table_BUSCO_output.tsv

description: Output file from running BUSCO on the genome assembly
DOI: 10.5061/dryad.kc835.4/5.4
title: m6.hc.gene_models.chr.gff3

description: Generic feature format file (gff3) of high-confidence genes in S. chacoense M6 (Corrected version as of 06/2018)
DOI: 10.5061/dryad.kc835.4/6.4
title: pasa_m6.hc.gene_models.cdna.fa

description: Transcript sequences (cDNA) of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.4/7.4
title: pasa_m6.hc.gene_models.cds.fa

description: Coding sequences (CDS) of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.4/8.4
title: pasa_m6.hc.gene_models.pep.fa

description: Protein sequences of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.4/9.4
title: m6_gene_models.func_anno.txt

description: Functional annotation of working gene model set in S. chacoense M6
DOI: 10.5061/dryad.m55m7/1
title: input_17LM

description: contains 3D landmark data of 17 landmarks taken on catfish skulls
DOI: 10.5061/dryad.m55m7/2
title: input_18LM

description: contains 3D geometric morphometric landmark data taken on sea catfish skulls
DOI: 10.5061/dryad.m55m7/3
title: skulllinks_17LM

description: contains skull links necessary for generalized Procrustes fit for the 17LM dataset
DOI: 10.5061/dryad.m55m7/5
title: outline

description: contains skull outline necessary for producing shape change graphs from the 3D GM data
DOI: 10.5061/dryad.n560cd7/1
title: Simulated Statistics-Knife Edge Mortality

description: File: SimulatedStatistics-KnifeEdgeMortality.csv

This file contains the simulated data from a knife-edge size-selective mortality simulation. 

Description of the variables:

Juveniles: Sample size for the juvenile population
Adults: Sample size for the adult population
Mortality: Mortality rate (in percent)
Mean: Mean circuli spacing of the adult population
Range: Difference between the maximum and minimum circuli spacing in the adult population
Min: Minimum value of the circuli spacing in the adult population
Max: Maximum value of the circuli spacing in the adult population
SD: Standard deviation of the circuli spacing in the adult population
Kurt: Kurtosis of the circuli spacing in the adult population
Skew: Skewness of the circuli spacing in the adult population
Percent: Proportion of the circuli spacing in the adult population that is outside (above) of the juvenile population
DOI: 10.5061/dryad.qt7nr84/1
title: Effective corolla length

description: Effective corolla length of the hummingbird-pollinated plant species of the Atlantic forest. Species abbreviations can be found on the supplementary material.
DOI: 10.5061/dryad.qt7nr84/3
title: Colour distances

description: Matrix of colour distances of the hummingbird-pollinated plant species of the Atlantic forest. Species abbreviations can be found on the supplementary material.
DOI: 10.5061/dryad.qt7nr84/4
title: Nectar traits

description: Nectar traits of the hummingbird-pollinated plant species of the Atlantic forest. Species abbreviations can be found on the supplementary material.
DOI: 10.5061/dryad.qt7nr84/5
title: Phenology data

description: Number of flowers of the hummingbird-pollinated plant species of the Atlantic forest on each community. Species abbreviations can be found on the supplementary material.
DOI: 10.5061/dryad.rh61t5g/1
title: Normalized read abundance class level

description: Relative read abundance (CSS normalized) at the fungal class level by sample. Data for HMSC analysis.
DOI: 10.5061/dryad.rh61t5g/2
title: Alpha diversity by sample

description: Alpha diversity (chao1 and OTU richness) and abiotic variables (TOC, TON, VWC, and soil pH) by sample. Sample metadata included (elevation, treatment, DNA conc.)  Treatments (S=shrub, OS=outside shrub/shrub interspace, SR=shrub removal)
DOI: 10.5061/dryad.rh61t5g/3
title: Normalized read abundance family level

description: Relative read abundance (CSS normalized) at the fungal family level by sample. Data for HMSC analysis.
DOI: 10.5061/dryad.vv6rn82/1
title: Chameleon-specific phenotype and behavioral data

description: Contains morphological measurements, performance measurements (bite force), physiological measurements (circulating testosterone), and behavioral responses (aggressive behavior counts and standardized color values) of live veiled chameleons to robochameleon models.
DOI: 10.17632/bkbw7psngy.1
title: Data for: Capture, swallowing, and egestion of microplastics by a planktivorous juvenile fish
DOI: 10.17632/xgwjg67hbt.1
title: Data for: Effect of heat-moisture treatment on physicochemical properties and in vitro digestibility of starch-Guar complex of maize starch varying in amylose content
DOI: 10.17632/yt4982nvyk.1
title: Data for: Effect of heat-moisture treatment on physicochemical properties and in vitro digestibility of starch-Guar complex of maize starch varying in amylose content
DOI: 10.5061/dryad.101kt28/1
title: Raw data of all fitness assays

description: This file contains data for all fitness assays. The first seven tabs are fitness assays for: male mating success, egg-to-adult viability, sperm competitiveness, desiccation resistance, larval competitiveness, male wing size and productivity that were performed on the success-selected, failure-selected, and control lines. The eighth tab contains data from a desiccation resistance assay on the stock population, and the ninth and tenth tabs contain data from wing size and viability assays performed on size-selected populations. These data include: treatment, replicate lines within treatments, replicate families within replicate lines, cross (outbred or inbred by brother-sister matings), replicate vials within replicate lines, sex, and day (the day on which mating trials were conducted). Note that different flies from different families and/or vials were used for each assay.
DOI: 10.5061/dryad.2118mj5/1
title: README

description: Summary of scripts used to generate the allele frequency files found in allele_freq.zip and allele_freq_BSA.zip. Scripts and associated input files are located in code.zip.
DOI: 10.5061/dryad.2118mj5/2
title: Code

description: Directory containing scripts and associated input files.
DOI: 10.5061/dryad.2118mj5/3
title: allele_freq

description: Directory containing genotype data for F2 pools (reduced representation sequencing).
DOI: 10.5061/dryad.2118mj5/4
title: allele_freq_BSA

description: Directory containing genotype data for F2 pools (whole genome sequencing).
DOI: 10.5061/dryad.26q7j45/2
title: Aux. figure - EO measurement scales by sensor type

description: Log-log plot of spatial and temporal and grain sizes for 44 current and historic satellite Earth observation (EO) sensors, colored by sensor type. Several sensors have been used to measure multiple biodiversity patterns, and the most cited or most novel were selected in these cases.
DOI: 10.5061/dryad.28fg251/1
title: Cicurina_COI_wUCE

description: COI sequence alignment
DOI: 10.5061/dryad.28fg251/2
title: Cicurina_399UCE_50

description: 50% occupancy nuclear UCE matrix
DOI: 10.5061/dryad.28fg251/3
title: Cicurina_238UCE_70

description: 70% occupancy nuclear UCE matrix
DOI: 10.5061/dryad.367f16t/1
title: fig1_data_labgenos

description: mitochondria and wolbachia titers in common lab genotypes
DOI: 10.5061/dryad.367f16t/2
title: fig1a_data_mitos

description: mitochondria titers in multiple lab genotypes
DOI: 10.5061/dryad.3gd34v2/1
title: fulldat
DOI: 10.5061/dryad.50h1r7j/1
title: Supplementary Figure  1

description: PCA biplots of the environments across each measured trait for the WAMI spring wheat panel from CIMMYT, Mexico. Environments with H2&lt; 0.50 were excluded from the analyses. Dendogram (lower right) showing the relationship among environments for grain yield using the Ward method.
DOI: 10.5061/dryad.50h1r7j/2
title: Supplementary Table 1

description: Heritability of the measured traits on each environment.
DOI: 10.5061/dryad.50h1r7j/3
title: Supplementary Table 2

description: Description of the different phenotypic datasets used for QTL validation through genomewide association mapping.
DOI: 10.5061/dryad.636d487/1
title: dev_long_driad

description: development time (dev_time) and longevity (longevity) of the morphs - fighters (f) and scramblers (s) at 18 C and 24 C
DOI: 10.5061/dryad.636d487/2
title: success_driad

description: Reproductive succes of fighter males competing with scramblers at 18 C and 24 C. Morh_irrad - morph of the irradiated male. Eggs_tot - total number of eggs in the sample, eggs- the number of eggs that did not hatch (sired by the irradiated male), fighter_success - proportion of eggs sired by fighter. If a male diad befor the end of the assay, its morph is given in the collumn died.
DOI: 10.5061/dryad.636d487/3
title: lines_dryad

description: Morph occurences in lines with different initial fighter proportions selected at 18C and 24C tested at either 18C or 24C . Fighters are coded with 1 and scramblers are coded with 0.
DOI: 10.5061/dryad.7q37g6b/1
title: DataArchive

description: See Readme
DOI: 10.5061/dryad.85q6j/1
title: Modified NebNext PoolSeq Protocol

description: Current version of NEBNext ultra fragmentase protocol for pooled sequencing.
DOI: 10.5061/dryad.98j4qv2/1
title: Six data files containing Crinia georgiana embryonic, tadpole and metamorph traits from sire-by-dam 90 families

description: Data files contain Crinia georgiana traits (survival, development rate, tadpole and metamorph morphology and metamorph jumping performance) for 90 sire-by-dam families. Fixed effects were water depth treatment, ovum size and corticosterone concentrations in the yolk. Random effects were sire, dam, block (and all interactions). Please see Materials and Methods for detailed description.
DOI: 10.5061/dryad.b01k5/2
title: Raw_OTUreads_per_sample_No_Cutoff_applied

description: This file contains raw 16s reads obtained for each bacterial OTU per sample (sheet 1). The sample code for each sample is given (sheet 2). No rare bacterial OTU cutoff is applied. This is the main file that is used to derive all other bacterial OTU subsets by applying rare OTU cutoffs.
DOI: 10.5061/dryad.b01k5/3
title: Sample_Information

description: This file contains information related to each sample e.g. sample codes, species, family, developmental stage, reads per sample etc.
DOI: 10.5061/dryad.b01k5/4
title: CAPdiscrim R Code
DOI: 10.5061/dryad.b01k5/5
title: PERMANOVA_Adonis_Vegan R Code
DOI: 10.5061/dryad.b01k5/6
title: Diversity_measurements R Code
DOI: 10.5061/dryad.bp26v20/10
title: PHYLACINE_logo_large

description: This is a color logo of the PHYLACINE database for use in presentations.
DOI: 10.5061/dryad.bp26v20/11
title: PHYLACINE_logo_large_bw

description: This is a black and white logo of the PHYLACINE database for use in presentations.
DOI: 10.5061/dryad.d45jj19/1
title: SOM_data_file_1_ynglefugle_index_og_standard_error

description: These indices are based on annual point count surveys that now involves c. 370 routes across 
the country monitored in the period 1st May – 15th June (Nyegaard et al. 2015). Most routes 
consist of 10–20 marked ‘points’ at which all birds seen and heard are recorded in a 5-min 
observation period (Heldbjerg 2005). All routes are counted in at least two years by the same 
observer, at the same time of year (± 7 days), same time of day (± 30 min) and under good 
weather conditions. The annual national abundance indices for each species had been 
calculated by DOF-Birdlife Denmark by fitting a log linear regression model to the point 
count data with Poisson error terms using the software TRends and Indices for Monitoring 
data (TRIM) (Pannekoek & van Strien 2004).The most up-to-date data files can be found on their website (http://www.dof.dk).
For further details, see:

See Nyegaard, T., Larsen, J.D., Brandtberg, N. & Jørgensen, M.F. (2015) Common bird 
Census in Denmark 1975-2014. Dansk Ornitologisk Forening (in Danish, with English 
summary).
DOI: 10.5061/dryad.gr5hc09/1
title: R code for Fisher et al 2018 Sexual cannibalism and population viability

description: This is the R code used to produce the two models in the MS
DOI: 10.5061/dryad.h0dj3p3/1
title: Data file for Clewley_et _al

description: A csv file containing the following columns: "sq10km" - 10km square of UK national grid;  "species" name; "sex" - Male/Female/Unknown; "time" - hour of day; "month"; "year"; "casualty" - 1 yes, 0 no; "predated"- 1 yes, 0 no; "died_other" - 1 yes, 0 no; "age_class" -ad(ult), juv(enile), PJ post-jevenile
[11] "mass"            "capture_history" "sparrowhawk"     "family"
DOI: 10.5061/dryad.hf11rb4/1
title: Data from: The leading-edge vortex on a rotating wing changes markedly beyond a certain central body size

description: Stable attachment of a leading-edge vortex (LEV) plays a key role in generating the high lift on rotating wings with a central body. The central body-size can affect the LEV structure broadly in two ways. First, an overall change in the size changes the Reynolds number, which is known to have an influence on the LEV structure. Second, it may affect the Coriolis acceleration acting across the wing, depending on the wing-offset from the axis of rotation. To investigate this, the effects of Reynolds number and the wing-offset are independently studied for a rotating wing. The three-dimensional LEV structure is mapped using a scanning PIV technique. The rapid acquisition of images and their correlation are carefully validated. The results presented in this paper show that the LEV structure changes mainly with the Reynolds number. The LEV-split is found to be only minimally affected by changing the central body radius in the range of small offsets, which interestingly includes the range for most insects. However, beyond this small offset range, the LEV-split is found to change dramatically.
DOI: 10.5061/dryad.jr0d5h7/4
title: Morphological Data

description: Morphological character data used for ancestral state reconstructions showing finger, toe and limb states for all taxa included in analyses, along with associated specimen voucher numbers.
DOI: 10.5061/dryad.k5p5cm1/1
title: HornGrowthIncrements

description: Annually resolved and absolutely dated measurements of Alpine ibex (Capra ibex) horn growth increments from 8’355 males, harvested between 1978 and 2013, in the eastern Swiss Canton of Grisons.
DOI: 10.5061/dryad.kc835.4/11.4
title: M6_gene_expression_matrix.xlsx

description: Expression abundance of representative gene models
DOI: 10.5061/dryad.kc835.4/12.4
title: 523_3_assembly_ALLPATHS_v4.1.fasta.repeatmasker.gff

description: GFF file of the repeat-masked genome
DOI: 10.5061/dryad.kg42p/1
title: Wojas et all_Corncrake eavesdropping

description: Data was collected during three seasons of field work (2013, 2014, 2015) in Upper Nurzec River Valley in Northeast Poland. To create this data we used Avisoft SASLab Pro 5.2.x (Avisoft Bioacoustics, Berlin, Germany), STATA v. 14.2 (StataCorp, College Station, TX, USA) and IBM SPSS Statistics v. 24 (IBM Corp, Chicago, IL, USA). The final version is created in Microsoft Excel file. Column heading are describe in worksheet called ‘legend’.
DOI: 10.5061/dryad.kj26br0/1
title: Ovary and Cold Tolerance D. suzukii Data

description: A spreadsheet containing ovary dimensional sizes and stages of development for D. suzukii samples in different rearing/temperature conditions.
DOI: 10.5061/dryad.m55m7/4
title: skulllinks_18LM

description: contains skull links necessary for generalized Procrustes fit for the 18LM dataset
DOI: 10.5061/dryad.m55m7/6
title: r_analyses

description: R script, contains all code necessary to reproduce the results and figures presented in this manuscript, except for the analyses of convergence
DOI: 10.5061/dryad.m55m7/7
title: r_AnalysisOfConvergence

description: R script, contains all code necessary to reproduce the results and figures for the analyses of convergence
DOI: 10.5061/dryad.mp7v3/1
title: Own Voice Experiment data

description: Each worksheet corresponds to each experiment.
DOI: 10.5061/dryad.n560cd7/2
title: SimulatedStatistics-TwoSamples

description: FILE: SimulatedStatistics-TwoSamples.csv

This file contains the simulated data from a sampling conducted on two populations. 

Description of the variables:

Mean 1st: Mean circuli spacing in the first population
Mean 2nd: Mean circuli spacing in the second population
Sample size: Total number of circuli spacing in the sample
Prop pop 1: Proportion of the samples coming from the first population
Prop pop 2: Proportion of the samples coming from the first population
Mean: Mean circuli spacing of the joint sample
Range: Difference between the maximum and minimum circuli spacing in the joint sample
Min: Minimum value of the circuli spacing in the joint sample
Max: Maximum value of the circuli spacing in the joint sample
SD: Standard deviation of the circuli spacing in the joint sample
Kurt: Kurtosis of the circuli spacing in the joint sample
Skew: Skewness of the circuli spacing in the joint sample
Percent: Proportion of the circuli spacing in the adult population that is outside (above) of the joint sample
DOI: 10.5061/dryad.n8m9c/1
title: Python Script for Comparing Non-Clock-Like Triplets to Convergence-Divergence Models

description: The attached text file is intended to run in Python. Edge parameters are simulated from a 3-taxon non-clock-like tree and tested to see whether they are consistent with a 3-taxon convergence-divergence model. Similarly, epoch parameters are simulated from a 3-taxon convergence-divergence model and tested to see whether they are consistent with a 3-taxon non-clock-like tree.
DOI: 10.5061/dryad.n8m9c/2
title: Online Appendix for Splitting Operator

description: Online-only appendix describing the mathematical details of the splitting operator and how to generate rate matrices.
DOI: 10.5061/dryad.nn514kg/1
title: Wind tunnel-female moth preference

description: The results from wind tunnel experiments showing preference of females for undamaged or caterpillar-damaged Bt or non-Bt rice
DOI: 10.5061/dryad.ph715dd/1
title: Shi_etal_2018_JBI_data_code

description: This compressed file contains all data and code associated with Shi et al. (2018), J. Biogeog.