cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6078284
title: ZEB1 inhibition sensitizes cells to the ATR inhibitor VE-821 by abrogating epithelial–mesenchymal transition and enhancing DNA damage

description: The ataxia-telangiectasia-mutated (ATM) and rad3-related (ATR) checkpoint pathway plays an essential role in modulating cellular responses to replication stress and DNA damage to maintain genomic stability. In various tumors, cancer cells have increased dependence on ATR signaling for survival, making ATR a promising target for cancer therapy. ATR inhibitors sensitize multiple tumor cell types to radiation and DNA-damaging agents, but application of an ATR inhibitor alone shows limited efficacy. In the present study, we investigated the role of epithelial-to-mesenchymal transition (EMT) and the EMT transcription factor ZEB1 in regulating cell sensitivity to the ATR inhibitor VE-821. We found that VE-821 induced EMT with concomitant ZEB1 upregulation and promoted migration in cells in which the anti-proliferative effect of VE-821 was limited. Knocking down ZEB1 using siRNA partially reversed VE-821-induced EMT, and sensitized cells to VE-821 via effective attenuation of migration and AKT/ERK signaling. Moreover, ZEB1 inhibition promoted Chk1 phosphorylation and induced S-phase arrest by enhancing TopBP1 expression, which suggests a distinctive modulatory effect of ZEB1 on Chk1. Finally, combining VE-821 with ZEB1 inhibition enhanced DNA damage accumulation. These results demonstrate that EMT represents a novel mechanism for limiting the effectiveness of an ATR inhibitor, and thus suggest that ZEB1 inhibition might represent a new approach to increasing the efficiency of, or reversing resistance to, ATR inhibitors.
DOI: 10.6084/m9.figshare.12894044
title: Appendixes 1-12

description: Appendixes 1-12
DOI: 10.6084/m9.figshare.17088325
title: Additional file 1 of Soil-transmitted helminths, intestinal protozoa and Clonorchis sinensis infections in southeast China

description: Additional file 1: Study sites in rural area.
DOI: 10.6084/m9.figshare.17088328
title: Additional file 2 of Soil-transmitted helminths, intestinal protozoa and Clonorchis sinensis infections in southeast China

description: Additional file 2: Study sites in urban area.
DOI: 10.6084/m9.figshare.19185512
title: Additional file 10 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 9: Dataset S2. Summary table of Human Microbiome Marker genes.
DOI: 10.6084/m9.figshare.19185515
title: Additional file 11 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 10: Dataset S3. METABOLIC result of metagenomes from eight different environments.
DOI: 10.6084/m9.figshare.19185515.v1
title: Additional file 11 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 10: Dataset S3. METABOLIC result of metagenomes from eight different environments.
DOI: 10.6084/m9.figshare.19185518
title: Additional file 12 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 11: Dataset S4. Comparison of protein prediction performance among five software packages/online servers on the genome of Escherichia coli O157H7 str. Sakai.
DOI: 10.6084/m9.figshare.19185518.v1
title: Additional file 12 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 11: Dataset S4. Comparison of protein prediction performance among five software packages/online servers on the genome of Escherichia coli O157H7 str. Sakai.
DOI: 10.6084/m9.figshare.19185521
title: Additional file 13 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 12: Dataset S5. Comparison of protein prediction performance among five software packages/online servers on the genome of Pseudomonas aeruginosa PAO1.
DOI: 10.6084/m9.figshare.19185521.v1
title: Additional file 13 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 12: Dataset S5. Comparison of protein prediction performance among five software packages/online servers on the genome of Pseudomonas aeruginosa PAO1.
DOI: 10.6084/m9.figshare.21806963
title: Latent Space Model for Higher-order Networks and Generalized Tensor Decomposition

description: We introduce a unified framework, formulated as general latent space models, to study complex higher-order network interactions among multiple entities. Our framework covers several popular models in recent network analysis literature, including mixture multi-layer latent space model and hypergraph latent space model. We formulate the relationship between the latent positions and the observed data via a generalized multilinear kernel as the link function. While our model enjoys decent generality, its maximum likelihood parameter estimation is also convenient via a generalized tensor decomposition procedure. We propose a novel algorithm using projected gradient descent on Grassmannians. We also develop original theoretical guarantees for our algorithm. First, we show its linear convergence under mild conditions. Second, we establish finite-sample statistical error rates of latent position estimation, determined by the signal strength, degrees of freedom and the smoothness of link function, for both general and specific latent space models. We demonstrate the effectiveness of our method on synthetic data. We also showcase the merit of our method on two real-world datasets that are conventionally described by different specific models in producing meaningful and interpretable parameter estimations and accurate link prediction.
DOI: 10.6084/m9.figshare.21806963.v2
title: Latent Space Model for Higher-order Networks and Generalized Tensor Decomposition

description: We introduce a unified framework, formulated as general latent space models, to study complex higher-order network interactions among multiple entities. Our framework covers several popular models in recent network analysis literature, including mixture multi-layer latent space model and hypergraph latent space model. We formulate the relationship between the latent positions and the observed data via a generalized multilinear kernel as the link function. While our model enjoys decent generality, its maximum likelihood parameter estimation is also convenient via a generalized tensor decomposition procedure. We propose a novel algorithm using projected gradient descent on Grassmannians. We also develop original theoretical guarantees for our algorithm. First, we show its linear convergence under mild conditions. Second, we establish finite-sample statistical error rates of latent position estimation, determined by the signal strength, degrees of freedom and the smoothness of link function, for both general and specific latent space models. We demonstrate the effectiveness of our method on synthetic data. We also showcase the merit of our method on two real-world datasets that are conventionally described by different specific models in producing meaningful and interpretable parameter estimations and accurate link prediction.
DOI: 10.6084/m9.figshare.19185524
title: Additional file 14 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 13: Dataset S6. Human microbiome functional profiling results for a CRC subject and a healthy control.
DOI: 10.6084/m9.figshare.19185524.v1
title: Additional file 14 of METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

description: Additional file 13: Dataset S6. Human microbiome functional profiling results for a CRC subject and a healthy control.
DOI: 10.6084/m9.figshare.22331278
title: Photo-produced aromatic compounds stimulate microbial degradation of dissolved organic carbon in thermokarst lakes

description: The microbial respiration response to UV light exposure (CO2-RR) and the response ratios of water properties and DOCchemistry (UV-Vis, FT-ICR MS) in ten thermokarst lakes on the Qinghai-Tibet Plateau.
DOI: 10.6084/m9.figshare.17088388
title: Additional file 3 of Integrated DIA proteomics and lipidomics analysis on non-small cell lung cancer patients with TCM syndromes

description: Additional file 3: Table S4. Detailed information of GO and KEGG enrichment analysis.
DOI: 10.6084/m9.figshare.17088388.v1
title: Additional file 3 of Integrated DIA proteomics and lipidomics analysis on non-small cell lung cancer patients with TCM syndromes

description: Additional file 3: Table S4. Detailed information of GO and KEGG enrichment analysis.
DOI: 10.6084/m9.figshare.17088385
title: Additional file 2 of Integrated DIA proteomics and lipidomics analysis on non-small cell lung cancer patients with TCM syndromes

description: Additional file 2: Table S3. Significant differentially-expressed proteins in plasma of lung cancer patients.
DOI: 10.15468/dl.5bx7d6
title: Occurrence Download

description: A dataset containing 4018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agastache rugosa (Fisch. & C.A.Mey.) Kuntze)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4018 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107120-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhtj2b
title: Occurrence Download

description: A dataset containing 13195 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum urvillei Steud."
 ]
}

 The dataset includes 13195 records from 386 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107121-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bt2t9p
title: Occurrence Download

description: A dataset containing 756 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pithecophaga jefferyi Ogilvie-Grant, 1896"
 ]
}

 The dataset includes 756 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107122-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7usv5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agave hybrida J.Verschaff.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107124-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jykndp
title: Occurrence Download

description: A dataset containing 141779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Remiz pendulinus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 141779 records from 295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107108-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d32h9w
title: Occurrence Download

description: A dataset containing 10323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum plicatulum Michx."
 ]
}

 The dataset includes 10323 records from 318 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107123-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22gfee
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((45.8104 24.06263,46.72297 24.06263,46.72297 25.16925,45.8104 25.16925,45.8104 24.06263))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (DD, NT, VU, EN, CR)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 94 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107125-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25952/rk7w-xh85
title: 'The Punchline of 'the Joke'

description: This dataset was created as part of the research process for Paul Bleakley's doctoral thesis titled The Punchline of 'the Joke': The Impact of Process Corruption in the Queensland Police Force, 1957-1987. This thesis focused on the use of process corruption by the Queensland Police Force, and the particular ways that this corruption impacted on vulnerable sub-populations in the community from the LGBTQI+ community to the political protest movement. The research was conducted at the Queensland State Archives in Runcorn, Queensland, from 2016 to 2018.
description: Notes of archival research conducted 2016-2018 at the Queensland State Archives.
DOI: 10.15468/dl.aebw98
title: Occurrence Download

description: A dataset containing 2604073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2014-2024"
 ]
}

 The dataset includes 2604073 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107095-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26179/gd8e-fh28
title: Enderby Land Flight Logs For Ice Radar and Navigation, 1977
DOI: 10.15468/dl.txam3p
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachypelma albiceps Pocock, 1903"
 ]
}

 The dataset includes 104 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107128-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpfhap
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Manis javanica Desmarest, 1822",
 "Year 2000-2024"
 ]
}

 The dataset includes 27 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107129-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sb3kjx
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Manis javanica Desmarest, 1822",
 "Year 2000-2024"
 ]
}

 The dataset includes 27 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107130-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ke3yf
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Manis javanica Desmarest, 1822",
 "Year 2000-2024"
 ]
}

 The dataset includes 27 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107131-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83hv7u
title: Occurrence Download

description: A dataset containing 153254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ailanthus altissima (Mill.) Swingle)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 153254 records from 1221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107126-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-55277
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.xuepnk
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lambertia inermis R.Br.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045703-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rthe8a
title: Occurrence Download

description: A dataset containing 87066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ophrys apifera Huds., Orthotrichum microcarpum De Not.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 87066 records from 348 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0359287-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6hzxj
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Iceland",
 "TaxonKey is Saxifraga hirculus L."
 ]
}

 The dataset includes 319 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092345-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-57743
title: Redemption tidings, vol. 38, nos. 1-52, 5 Jan. - 28 Dec. 1962

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.7s9abu
title: Occurrence Download

description: A dataset containing 864 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((63.19757 8.58232,165.85382 8.58232,165.85382 49.62724,63.19757 49.62724,63.19757 8.58232))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantago lanceolata L."
 ]
}

 The dataset includes 864 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324331-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mks7lg
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stylaster roseus (Pallas, 1766)"
 ]
}

 The dataset includes 287 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001787-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnz8wy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteroceras spathibrachiatum (J.J.Sm.) Garay"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097433-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v675kq
title: Occurrence Download

description: A dataset containing 2026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Odynerus spinipes (Linnaeus, 1758), Oecetis parva (Banks, 1907))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 2026 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0359281-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.