cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27773973.v1
title: Behavioral risk models explain locomotor and balance changes when walking at virtual heights: Experiment 1 Data

description: Experiment 1 used a rectangular walkway that was 1.22 m wide, 2.44 m long, and 1.90 cm high (Figure 2). The virtual walkway was matched to a physical walkway (height: 1.90 cm) in the laboratory to provide proprioceptive feedback of the walkway edge. During the walking task, two different virtual conditions were presented to the participants in a randomized order: a high walkway (15 meters in the air) and a low walkway (ground level) height. In the Low height condition, the plank was virtually presented at ground level. In the High height condition, the plank was virtually elevated 15 m above the ground.The primary outcome measure for Experiment 1 was lateral motion, or movement along the width of the walkway. Lateral deviation represents compensatory, unnecessary motion that is orthogonal to the explicit goal of walking the length of the walkway and away from the optimal shorter path to the desired destination. The lateral deviation was measured from the outer edge of the physical walkway to the outer foot’s lateral edge after each trial.
DOI: 10.17632/8d3jm3x29t
title: POLARIS: The POLArized RadIation Simulator for Mie scattering in optically thick dusty plasmas

description: POLARIS is a 3D Monte-Carlo radiative transfer code written in C++ for simulating the Mie scattering of laser light in optically thick nanodusty plasmas. Originally developed for astrophysical applications, POLARIS has been adapted to address the specific needs of the plasma physics community. To achieve this, a given number of photon packages characterized by their traveling direction d→, wavelength λ, intensity, and polarization state in terms of the Stokes vector S→ is generated to mimic the emission of a laser source with a Gaussian intensity distribution. These photon packages are then tracked along their probabilistic paths through the particle cloud, with scattering processes determined stochastically based on probability density distributions derived from the optical properties of the dust particles. POLARIS allows simulations for arbitrary wavelengths and grain sizes, as long as the far-field approximation holds. This paper introduces this adapted version of POLARIS to the plasma physics community, highlighting its capabilities for modeling light scattering in dusty plasmas and serving as a comprehensive reference for its application. In doing so, POLARIS provides a powerful tool for the in-situ analysis of optically thick dusty plasmas.
DOI: 10.17632/cpyj7v99rj
title: dd-cfDNA and GEP in heart-transplantation

description: Our research hypothesis is that matched results from the Prospera™ and AlloSure® donor derived cell-free DNA assays intended to detect acute rejection in single-organ heart transplant patients correlate with each other. Each unique UCSD ID represents an individual single-organ heart transplant patient who received an endomyocardial biopsy at UC San Diego Health between October 2020 and January 2022. A unique "De-identified Sample ID" is assigned to each Prospera™ sample which were collected at the time of biopsy, and matched to an AlloSure® (dd-cfDNA) and AlloMap® (gene expression profiling) sample at most 14 days prior to the biopsy where applicable. The results of the dd-cfDNA assays are provided as a donor fraction percentage and the AlloMap® results are provided as a score from 0-40. We were able to determine that statistically significant correlation existed between the results of the two assays using logistic regression. Using mixed-effects logistic regression, we observed that a subject's demographic characteristics were also important co-predictors of AR when using AlloSure® and Prospera™ results as the primary predictor. Future clinical outcomes data are also provided for each sample, with a positive value indicating that the outcome was noted in UC San Diego Health medical records since the initial sample collection. Future de-novo DSA outcomes were also collected from medical records for each sample but were not included in the "Combined Future Outcomes" column as de-novo DSA is not considered to be a clinical event by itself.
DOI: 10.17632/yprk4jdgnv
title: Sport Services Dataset

description: This dataset corresponds to actual data from the functioning of a sports facility and refers to all new users who signed up between June 1st 2014 and October 31st 2019. Demographic and service level agreement (SLA) data is collected by operators in the process of enrolling users in the activities they intend to practice. The data regarding the frequency of the sports facility and classes were obtained by the access control system where each user identifies himself with an RFID card to access the facilities on the days and times agreed in his SLA.
DOI: 10.6084/m9.figshare.19217124.v1
title: High Quality DD Catalogue Legend

description: High Quality DD Catalogue Legend
DOI: 10.6084/m9.figshare.28735085.v1
title: ChatGPT TABLAS.xlsx

description: Esta revisión de literatura se centra en los usos, beneficios, desafíos y limitaciones  asociados con la integración de ChatGPT en la enseñanza de EFL y ESL.
DOI: 10.6084/m9.figshare.28903058.v3
title: Supplementary material, data, and figure scripts for Benavides & Barkley "Model for transitional turbulence in a planar shear flow" (2025)

description: The zip file contains the following:<br><br>1) Electronic_supplementary_material_Benavides_Barkley_2025.pdf, which is the electronic supplementary material accompanying the main paper. This contains information regarding details of the stability analysis, details of the bound on the critical angle, and a description of supplementary movies.<br>2) Directory 'Movies', which includes the supplementary movie files (described in the supplementary material).3) Figures.ipynb (Jupyter notebook) and Figures.py (script version of the Jupyter notebook), which are the scripts used to make the figures in the study.4) Directory 'DNS', which includes both running scripts and data from fully-resolved, 3D simulation of Waleffe flow. Ran using Dedalus (https://dedalus-project.org/). 5) Directory '2D_MWF' which includes both running scripts and data from simulations of the paper's model of Waleffe flow. The code is preserved at https://doi.org/10.5281/zenodo.15261063, available via the Creative Commons Attribution 4.0 International (CC-BY) license. Ran using Dedalus.<br><br>6) Directory '1D_MWF' which includes both running scripts and data from simulations of the paper's model of Waleffe flow in the 1D, tilted geometry configuration. Ran using Dedalus.
DOI: 10.6084/m9.figshare.5902033.v1
title: Data Indicating that Trivia Crack answers has Bias

description: The online game and mobile App "Trivia Crack" has built-in bias - "All answers are not created equal". Multiple data sets were gathered totaling 768 questions gathered over a period of 3 weeks. The data indicates that when the user has no idea what the answer is the best choice is to select position 1 (top) in the answer set as the answers are biased. This has been proven with analysis as described here: http://www.chemconnector.com/?p=3482
DOI: 10.17632/7kd5wj7v7p
title: IXI Sample Dataset

description: This project is a modified version of the IXI Dataset adapted for particular cases of use where each subject is represented by a directory containing all the modalities associated with them.
DOI: 10.6084/m9.figshare.19107191.v1
title: Diabetes 130-US hospitals for years 1999-2008 Data Set

description: http://archive.ics.uci.edu/ml/datasets/Diabetes+130-US+hospitals+for+years+1999-2008<br>Adapted for ehrapy. Details: https://github.com/theislab/ehrapy-datasets<br>
DOI: 10.17632/893yxwfcr8
title: Prevalence of Retained Primitive Reflexes in a class of Healthy Preschoolers

description: The purpose of this study was to assess the prevalence of retained primitive reflexes in healthy preschool children in the Southeastern United States. Method: Twenty-one children between ages 3 and 5 years enrolled in the same preschool class participated in the study. A physical therapist tested each child for the asymmetrical tonic neck reflex (ATNR), symmetrical tonic neck reflex (STNR), and tonic labyrinthine reflex (TLR) and the prevalence of each reflex was determined for the children overall and for boys and girls separately. Results: Only one child study displayed no presence of retained primitive reflexes. Six children (29% of subjects) scored between 1 and 2 on all reflexes tested, and 14 children (50% of subjects) scored a 3 or 4 on at least one of the reflexes. The TLR (95% of subjects) was the most commonly retained reflex, followed by the right ATNR (86% of subjects), left ATNR (81% of subjects), and STNR (67% of subjects). The number of subjects with evidence of reflex retention was nearly identical for each reflex in both boys and girls. Conclusions: Because of the high prevalence of primitive reflex retention found in this study and in previous work, routine screening of primitive reflexes in preschool-age children may be prudent to identify children who may need early intervention in the form of reflex integration therapy.
DOI: 10.6084/m9.figshare.26317375.v1
title: Data on study titled: Effects of Butterfly Pea Flower (Clitoria ternatea) Extract Shampoo as anti inflammation in dandruff scalp: Real time PCR Quantitative Test for Interleukin-8

description: <b>Background</b>Dandruff is characterized by flaking, redness, and itching of the scalp, negatively impacting quality of life. The pathogenesis of dandruff involves inflammatory processes, but remains not fully understood. Clitoria ternatea, known for its anti-inflammatory and antioxidant properties, presents potential as a dandruff treatment. This study aims to evaluate the anti-inflammatory effects of butterfly pea flower extract (Clitoria ternatea) shampoo on dandruff, specifically its impact on the Quantification cycle (Cq) of mRNA IL-8. <b>Methods</b>In a pre-experimental study, 70 dandruff patients were treated with either 20% Clitoria ternatea extract shampoo or 2% ketoconazole shampoo. Quantitative RT-PCR was used to assess the Cq of mRNA IL-8 at baseline and after four weeks of treatment.<b>Results </b>The mean IL-8 mRNA Cq before using Clitoria ternatea shampoo was 29.55, which increased to 33.02 after four weeks (p &lt; 0.001), indicating lower mRNA expression. Similarly, the mean IL-8 mRNA Cq before using ketoconazole shampoo was 29.96, which increased to 34.00 after four weeks (p &lt; 0.001). There was no significant difference between the two groups (p = 0.459).<b>Conclusion</b>The anti-inflammatory effects of Clitoria ternatea, as evidenced by the reduction in IL-8 mRNA expression, suggest that its active ingredients may influence the pathogenesis of dandruff, offering a potential therapeutic option for managing this condition.
DOI: 10.6084/m9.figshare.13028228.v6
title: Supplementary materials for Revisiting the question of nucleated versus enucleated erythrocytes in birds and mammals

description: Supplementary materials, raw data and R script for Revisiting the question of nucleated versus enucleated erythrocytes in birds and mammals
DOI: 10.6084/m9.figshare.29086976.v1
title: TPMs from RNA-seq from zebrafish embryos from 18 developmental stages from 1-cell to 5 dpf (White et al. 2017)

description: RNA-seq count data from White et al. 2017 converted to Transcripts Per Million (TPM). https://doi.org/10.7554/eLife.30860<br>
DOI: 10.6084/m9.figshare.25182506.v1
title: A marrow cell dataset and baseline evaluations for precision classification of malignant tumor diseases

description: When physicians diagnose malignant tumors, such as acute leukemia, the rapid and precise classification of the disease is imperative for guiding subsequent treatment protocols. Traditional diagnostic methods, which rely on peripheral blood smears, are limited to assessing a narrow spectrum of cell types, thereby constraining the accurate determination of the disease subtype. Hence, a more exhaustive cytomorphologic analysis, supplemented by a bone marrow smear, is essential to devise a tailored treatment approach. Given the scarcity of comprehensive bone marrow blood smear datasets, we have developed the inaugural high-quality bone marrow cell fine-grained classification dataset (BMC-FGCD). This dataset comprises nearly 100,000 samples, encompassing 40 detailed categories. The assembly of the BMC-FGCD was overseen by a cadre of expert physicians, who meticulously managed the sample collection, image processing, and high-precision annotation. Furthermore, we employed nine well-established deep learning models to conduct baseline evaluations. These experiments provided a uniform benchmark for the assessment of bone marrow blood cell classification models. The BMC-FGCD dataset is poised not only to enhance the accuracy of bone marrow blood cell classification models in the future but also to significantly contribute to the field of rare or atypical blood cell classification due to its granularity and comprehensive data
DOI: 10.6084/m9.figshare.5284486.v1
title: p450nor

description: Folder containing alignments and tree of <i>p450nor </i>gene sequences detected in fungal and algal genomes. Bacterial homologs of each gene (when applicable) were collected from an analysis of the gene against the bacterial RefSeq protein database are included as well.<br>
DOI: 10.6084/m9.figshare.13049060.v1
title: Millipede genomes reveal unique adaptations during myriapod evolution

description: The Myriapoda, composed of millipedes and centipedes, is a fascinating but poorly understood branch of life, including species with a highly unusual body plan and a range of unique adaptations to their environment. Here, we sequenced and assembled 2 chromosomal-level genomes of the millipedes <em>Helicorthomorpha holstii</em> (assembly size = 182 Mb; shortest scaffold/contig length needed to cover 50% of the genome [N50] = 18.11 Mb mainly on 8 pseudomolecules) and <em>Trigoniulus corallinus</em> (assembly size = 449 Mb, N50 = 26.78 Mb mainly on 17 pseudomolecules). Unique genomic features, patterns of gene regulation, and defence systems in millipedes, not observed in other arthropods, are revealed. Both repeat content and intron size are major contributors to the observed differences in millipede genome size. Tight Hox and the first loose ecdysozoan ParaHox homeobox clusters are identified, and a myriapod-specific genomic rearrangement including <em>Hox3</em> is also observed. The Argonaute (AGO) proteins for loading small RNAs are duplicated in both millipedes, but unlike in insects, an AGO duplicate has become a pseudogene. Evidence of post-transcriptional modification in small RNAs—including species-specific microRNA arm switching—providing differential gene regulation is also obtained. Millipedes possesses a unique ozadene defensive gland unlike the venomous forcipules found in centipedes. We identify sets of genes associated with the ozadene that play roles in chemical defence as well as antimicrobial activity. Macro-synteny analyses revealed highly conserved genomic blocks between the 2 millipedes and deuterostomes. Collectively, our analyses of millipede genomes reveal that a series of unique adaptations have occurred in this major lineage of arthropod diversity. The 2 high-quality millipede genomes provided here shed new light on the conserved and lineage-specific features of millipedes and centipedes. These findings demonstrate the importance of the consideration of both centipede and millipede genomes—and in particular the reconstruction of the myriapod ancestral situation—for future research to improve understanding of arthropod evolution, and animal evolutionary genomics more widely.
DOI: 10.6084/m9.figshare.24635901.v1
title: <b>Single-cell transcriptomics identifies a novel vascular barrier endothelial cell cluster under high hydrostatic pressure and hypertension</b>

description: Alterations in hemodynamic forces occur in a hypertensive state, yet the effect of such mechanical stimuli, especially high hydrostatic pressure on endothelial cells is relatively understudied. Here, to simulate physiological conditions of hypertension and understand endothelial cell response, we performed single-cell RNA sequencing of endothelial cells cultured under normal (100 mmHg) and high (200 mmHg) hydrostatic pressure. We identified a distinct cluster of endothelial cells, characterized by the expression of AQP1 and GJA4, and validated the increased expression of this cell cluster under high hydrostatic pressure and in the aorta endothelium of hypertensive animals. High hydrostatic pressure also altered endothelial cell morphology and increased transcellular permeability. Through a combined analysis of hypertension-related loci identified in genome-wide association studies, we found that endothelial cell-enriched genes may mediate biological functions that contribute to the pathophysiology of hypertension. Overall, this study highlights a novel vascular barrier functional endothelial cell cluster under high hydrostatic pressure and is functionally associated with blood pressure regulation, providing insights into endothelial cell transcriptomic changes in response to high hydrostatic pressure and hypertension.
DOI: 10.6084/m9.figshare.c.3662366_d784.v1
title: Full body CT scan of a Hemigaleus microstoma (ZMA.PISC.109157)

description: This file includes 1291 DICOM files of a female Hemigaleus microstoma specimen housed in the spirit collection of Naturalis Biodiversity Center, Leiden, the Netherlands with registrationnumber ZMA.PISC.109157. The specimen is scanned in a medical CT scanner (Toshiba Aquilion 64) at the Leiden University Medical Center, the Netherlands at 100 kV and 150 mAs with a slice thickness of 0.5 mm.
DOI: 10.17632/5pzr9t645v
title: Replication Package for "CRISK: Measuring the Climate Risk Exposure of the Financial System"

description: # CRISK: Measuring the Climate Risk Exposure of the Financial System 
# by Hyeyoon JUNG, Robert ENGLE, and Richard BERNER

---
** CITATION **
Jung, Engle, and Berner
"CRISK: Measuring the Climate Risk Exposure of the Financial System "
Journal of Financial Economics (Forthcoming).
---
This is a replication package for our paper. Note that confidential supervisory data, as well as data with copyright restrictions, have been replaced with pseudo files stored in the Input/Pseudo folder. While the code runs with these pseudo-datasets, replicating the results requires the full data. Refer to the Dataset_List.pdf and the Data Sources section of the paper for details. The code also includes detailed descriptions of the source of each input file.
DOI: 10.6084/m9.figshare.12750968.v2
title: DATASET from “Analyzing the effect of process parameters on the shape of 3D profiles” by B.M.Colosimo, M.Pacella, JQT, 43(3), 2011

description: The dataset refers to the measurement of axes of Ti-6Al-4V cylindrical surfaces obtained by lathe turning. The machined surfaces were measured using a Coordinate Measuring Machine (CMM) and the axis of each cylinder was derived from the CMM measures. The dataset consists of a MAT-file including the CMM measurements and a Matlab function “LoadData.m” to extract and convert the data into Cartesian coordinates.<br> All the details about the dataset can be found in: <pre> </pre><pre>Colosimo, B.M., Pacella, M. Analyzing the effect of process parameters on the shape of 3D profiles (2011) Journal of Quality Technology, 43 (3), pp. 169-195.</pre><pre>DOI: 10.1080/00224065.2011.11917856</pre><pre> </pre><pre>Pacella, M., Colosimo, B.M. Multilinear principal component analysis for statistical modeling of cylindrical surfaces: a case study (2018) Quality Technology and Quantitative Management, 15 (4), pp. 507-525.</pre><pre>DOI: 10.1080/16843703.2016.1226710</pre>
DOI: 10.6084/m9.figshare.19093745.v1
title: TableE7_D0_D1_D5_DGE_all_clusters_scRNA-seq.xlsx

description: TableE7_D0_D1_D5_DGE_all_clusters_scRNA-seq.xlsx
DOI: 10.6084/m9.figshare.25406158.v1
title: Elsafty_RBCs_Slide_8

description: Each one of (Elsafty_RBCs_Slide_1-25) contains the field images/patches of a specific slide/patient. The names of the patches start with the respective slide/patient number, followed by the unique patch/field number. There is a total of 47,363 patches with 1076x535 pixels size from the 25 slides/patients, the counts of patches per slide/patient are as follows: 1690, 1709, 2697, 2400, 1905, 1803, 2964, 3049, 2464, 2080, 1894, 1852, 2590, 2263, 3328, 983, 1066, 935, 1131, 1237, 1874, 1393, 1277, 1199, and 1580.
DOI: 10.6084/m9.figshare.24250753.v1
title: Dataset

description: This study aimed to evaluate the utility and applicability of electrooculography (EOG) when studying ocular activity during complex motor behavior. Due to its lower spatial resolution relative to eye tracking (ET), it is unclear whether EOG can provide valid and accurate temporal measurements such as the duration of the Quiet Eye (QE), that is the uninterrupted dwell time on the visual target prior to and during action. However, because of its greater temporal resolution, EOG is better suited for temporal-spectral decomposition, a technique that allows us to distinguish between lower and higher frequency activity as a function of time. Sixteen golfers of varying expertise (novices to experts) putted 60 balls to a 4-m distant target on a flat surface while we recorded EOG, ET, performance accuracy, and putter kinematics. Correlational and discrepancy analyses confirmed that EOG yielded valid and accurate QE measurements, but only when using certain processing parameters. Nested cross-validation indicated that, among a set of ET and EOG temporal and spectral oculomotor features, EOG power was the most useful when predicting performance accuracy through robust regression. Follow-up cross-validation and correlational analyses revealed that more accurate performance was preceded by diminished lower-frequency activity immediately before movement initiation and elevated higher-frequency activity during movement recorded from the horizontal channel. This higher-frequency activity was also found to accompany a smoother movement execution. This study validates EOG algorithms (code provided) for measuring temporal parameters and presents a novel approach to extracting temporal and spectral oculomotor features during complex motor behavior.
DOI: 10.6084/m9.figshare.22147448.v1
title: Compositions of minerals from the Coto high-Al chromite deposit, Zambales ophiolite, Philippines

description: This dataset presents a series of elemental and isotopic compositions for rocks collected from the Coto high-Al chromite deposit, Zambales ophiolite, Philippines, including the major element compositions of chromite and in-situ Li isotopic compositions of olivine. These data were used to constrain parental magma compositions of the high-Al chromite ores, nature of their parental magma sources, and geodynamic setting during the chromite mineralization.