cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/ngvg4b
title: Data and codes associated with the publication 'Active droplets controlled by enzymatic reactions'

description: The archive 'data_to_plot.zip' contains the data that were generated to produced the plots shown on Figures 3 to 9 in our manuscript 'Active droplets controlled by enzymatic reactions'. The data was produced using the two codes: a Brownian dynamics code (given in the archive 'BD_code.zip') and a code to integrate the hybrid field-particle dynamics described in the manuscript (given in the archive 'HM_code.zip').
DOI: 10.57745/lmbunb
title: Dataset on the Life Cycle Assessment of pizzas produced in different contexts and with real-world variability in consumer practices

description: Human food consumption is responsible for significant environmental impacts, which in recent years have been the focus of an increasing amount of research. One of the major results of these efforts has been an appreciation for the ways in which impacts can differ among products. To date, though, relatively little is known about possible differences in the environmental performance of a single food product that is made or produced in different contexts. Furthermore, the influence of consumer practices, such as cooking time or cleaning method, has not yet been investigated. This dataset therefore provides information i) to compare the environmental impacts of a single food product—in this case, pizza—that is produced in different contexts (industrial, homemade, and assembled at home) and ii) to investigate the influence of real-world consumer practices on these impacts. Two study models were used: a ham-and-cheese pizza and a mixed-cheese pizza. The functional units examined were one pizza and 1 kg of ready-to-eat pizza. The system perimeter extended from the agricultural production of ingredients to the consumption of the pizza at home. All inventory data related to the steps occurring before purchase (including storage at the supermarket) came from databases or the literature, while inventory data related to the steps occurring after the sale were obtained from questionnaires answered by 69 consumers who prepared and consumed the six pizzas (two recipes x three methods of preparation) at home. Background data were selected in the AGRIBALYSE 3.0 and Ecoinvent 3.6 databases. The environmental impacts of the six pizzas were calculated by Life Cycle Assessment (LCA) using the characterization method "EF 3.0 Method (adapted) V1.00 / EF 3.0 normalization and weighting set” in SimaPro software. To compare the environmental impacts of the six pizzas, 69 LCAs were performed for each; to compensate for missing data from incomplete questionnaires, we performed random draws from the available data to generate the life cycle inventory for each assessment. The data obtained in this study can be used to make recommendations to consumers regarding more environmentally friendly food choices and practices.
DOI: 10.57745/lqllrn
title: OpenFOAM data for a circular cylinder wake flow (Re=300)

description: The current dataset contains numerical results from openfoam simulation of a cylinder wake at reynolds number Re=300. The geometry has been constructed using blockMesh followed by snappyHexMesh tools : the 3D domain is a [0:20]x[-10:10]x[0:3.14] box crossed by a Z axis cylinder centered at Ccyl=(5,0) with a radius Rcyl=0.5. As for the simulation, the pimpleFoam solver of openfoam 21.12 has been used, followed with parafoam for post treatment visualization, and ITHACA-FV for POD The code has been run on a cluster with almost 28 CPUs with commands like : RUNNING decomposePar -decomposeParDict system/decomposeParDict -force mpirun -n 28 pimpleFoam -parallel mpirun -n 28 redistributePar -parallel -reconstruct -overwrite POST treatment In current directory, Iso Q generation for visualization : postProcess -func Q -time "500:600" In POD-* directory, POD using ITHACA-FV library and ANR code RedLUM. POD is performed on 500:1000 (train set) using the snapshot method. Temporal modes are also evaluated on 1000:1100 (test set) by snapshot projection.
DOI: 10.57745/mibh6e
title: Entretien avec Valli Arrak. Histoire de vie et expériences de déportation en URSS

description: Cet entretien a eu lieu le 15 mars 2010 à Tartu, Estonie, au domicile de l'interviewée. Il a été mené par Aigi Rahi-Tamm et Juliette Denis, avec la participation de Marc Fichet (technicien son, RFI) qui s'occupait de l'enregistrement. L'entretien a été réalisé en estonien et traduit et interprété en français. Il a duré 1 heure et 29 minutes.
DOI: 10.57745/kxrb5b
title: Projections climatiques régionalisées : correction de biais et changements futurs

description: Le volet climat d’Explore2 a pour objectif de produire, évaluer et analyser des données atmosphériques à haute résolution, corrigées de leurs biais, qui couvrent la période historique et les décennies futures jusqu’en 2100. Celles‐ci ont vocation à alimenter des projections hydro‐climatiques. Le rapport présente les méthodes appliquées pour l'élaboration de ces données.
DOI: 10.57745/mkxiyi
title: Supporting data and code: "Evolution of thermal plasticity in Hymenoscyphus fraxineus during ash dieback expansion in Europe"

description: Data and code related to the article "Evolution of thermal plasticity in Hymenoscyphus fraxineus during ash dieback expansion in Europe" accepted in Ecology and Evolution. Authors: Becans, C., Robin, C., Budde K.B., Ghelardini, L., Gross A., Lygis V., Nielsen L. R., Saint-Jean, G., & Soularue, J. P.
DOI: 10.57745/nw0qvy
title: Deliverable D3.2 Assessment Indicators - Demonstrated VC - CS-Gre

description: This file is part of the deliverable D3.2 of the European H2020 FAIRCHAIN. It structures all the data relevant for the description of the demonstrated value chain of the case study in Greece (CS-Gre). The description of the baseline covers the dimensions of co-creation business models and sustainability including environmental, economic and social perspectives.
DOI: 10.57745/nh970d
title: Replication data for "Assessing the handling quality of bicycles : a review of current theoretical approaches"

description: Data and code (Python) to calculate the theoretical bycicle handling quality indicators presented in the associated paper.
DOI: 10.57745/mh3cin
title: Physiological and behavioural sensor-captured data from cow under subacute ruminal acidosis compared to cows under control conditions

description: This dataset contains 8 files containing all data from an in vivo experiment on dairy Cows conducted in March to May 2015 in an INRAE experimental facility named Herbipôle. The objective of the study was to determine whether early sensor-captured modifications in dairy cow behaviour can indicate risk for SARA (Sub-Acute Rumen Acidosis), independently of the diet. We analyzed modifications in ruminal pH, rumen concentrations of fatty acids, milk production and milk fat-to-protein ratio to identify SARA status, and modifications in cow activity captured by a real-time locating system to identify changes in behaviour related to SARA in cows fed a moderately high-energy (31.5% starch) or a low-energy diet (10.5% starch). Control cows (n=14) received the low-starch diet for 60 days. Challenge cows (n=14) received the same low-starch diet except for 10 days when they were gradually switched from the low- to the high-starch diet and the next 14 days when they were fed the high-starch diet only. Dataset1 presents individual rumen fermentative parameters Dataset2 presents individual milk yield and milk quality parameters Dataset3 presents individual cow rumen pH daily indicators obtained through a ruminal bolus. Dataset4 presents individual cow activities inferred from the realtime localisation system. Dataset5 presents individual cow ingestion data Dataset6 presents daily individual cow risk to develop SARA Dataset7 presents raw rumen pH data for challenge cows Dataset8 presents raw rumen pH data for control cows
DOI: 10.57745/of9wxr
title: LakeTSim (Lake Temperature Simulations)

description: The LakeTSim dataset consists of daily epilimnion and hypolimnion water temperature simulations and the associated uncertainties for 401 French lakes including natural lakes, reservoirs gravel pits and other artificial lakes. Simulations were conducted between 1959 and 2020 using the OKPLM (Ottosson-Kettle-Prats Lake Model).
DOI: 10.57745/mh70ke
title: Dataset corresponding to the publication : Aeroacoustic radiation of low Reynolds number rotors in interaction with beams, Gojon et al., JASA, 2023.

description: Rotor interacting with a beam noise database as presented in Gojon, Parisot-Dupuis, Mellot, & Jardin. Aeroacoustic radiation of low Reynolds number rotors in interaction with beams. JASA, 2023. Thrust and power coefficients, as well as autopower of acoustic pressure are given. The name gives the operating point, for example, in the files ISAE_2_D10_L20_autopower and ISAE_2_D10_L20_static, D stands for the circular geometry of the cylinder beam, 10 its diameter (in mm), and L the distance between the beam and the rotor disk plane (in mm). CAD files of the three rotors (ISAE 2, ISAE 3, and ISAE 4) are also provided Example matlab codes to post-process results can also be found : - For aerodynamic results , the thrust and power coefficients are given as a function of RPM. Typical temperature and fluid density values are 290K and 1.2kg/m3, respectively. In some cases, data exhibit relatively low values at a given RPM compared to those at other RPMs (e.g. ISAE_2_T10_L20_static at 7000 RPM), which might be due to vibrations of the test rig at this RPM. - For acoustic results, the autopower (Pa2) is given as a function of the frequency (Hz). Autopowers are obtained from fluctuating pressure time signals (16s) by computing the fast Fourier transform (FFT) with a Hanning window applied on 100 segments, using a 50% overlap and a magnitude correction factor, which leads to a frequency resolution of 3.125 Hz. Structure of acoustic data : For each rotation speed, data from 13 microphones located 1.62m away from the rotor center and at different latitude angles (every 10 degrees) from the rotor plane are provided. Microphone 1 corresponds to +60 degrees (with respect to the rotor plane, where + indicates that it is located in the direction opposite of the flow, for our rotors blowing downward, please refer to Figure 1 from the publication). Microphone 2 corresponds to +50 degrees ... Microphone 7 corresponds to 0 degrees (the rotor plane) … Microphone 13 corresponds to -60 degrees. Moreover, the test rig is fixed on a turntable, which can rotate the entire rotor-beam setup in azimuth with a step angle of 10 degrees. With the couple directivity antenna/turntable, the almost complete spherical directivity can be investigated, only the poles (absolute value of latitude angle over 60 degrees) being missing. The definitions of latitude and azimuth angles are given in Figure 1 of the corresponding publication.
DOI: 10.57745/mxau5r
title: BAPPOP - Base de données sur la contamination des plantes potagères par les molécules organiques polluantes/An international dataset on organic molecule concentrations in soil and related kitchen garden crops

description: Ce jeu de données (BAPPOP), basé sur une analyse de la littérature scientifique, présente les concentrations de molécules organiques dans les sols et les plantes potagères. BAPPOP compile 6246 entrées collectées dans 87 publications et 3 rapports, reliant les données sur les concentrations dans les sols et les plantes potagères. Des informations supplémentaires, relatives aux conditions dans lesquelles les données ont été obtenues, complètent ce jeu de données : description des molécules organiques, propriétés des sols, description et traitement des plantes, méthodes expérimentales et analytiques, informations bibliographiques.
DOI: 10.57745/nmr6ax
title: Hydrological projections (1985-2100) of the Velicka DRN (Czechia)

description: Hydrological model outputs at daily time step for the projection simulations (1985-2100) in the Velicka DRN (Czechia). Simulated discharge, baseflow an state of flow (flowing/dry) is spatially distributed at the reach scale. Other hydroclimatic variables (temperature, precipitation, rainfall, snowfall, potential evapotranspiration, actual evapotranspiration, vegetation interception, snow water equivalent, saturation of the soil layer, saturation of the grounwater layer) are spatially aggregated at the catchment scale. Hydrological projections were produced for 3 SSP scenarios and 5 climate models.
DOI: 10.57745/nznmzh
title: NMR metabolomic analyses of leaf of maize plants cultivated in field under mild nitrogen deficit

description: NMR Metabolomic analyses of young leaf of maize plants cultivated in field with optimal and low N fertilization treatments (HN and LN, respectively). 1H-NMR analyses were performed on leaf extracts from the genetic diversity of a core panel of 29 European corn hybrids.
DOI: 10.57745/lai6yu
title: Physics-based Simulations of 3D Wave Propagation with Source Variability: HEMEW^S-3D

description: The HEMEW^S-3D database contains 30,000 simulation results of the 3D elastic wave equation. This equation governs the propagation of waves in a 3D propagation medium. Elastic waves originate from a deep source with random location and random orientation. Three types of data are given in this database: a materials dataset, source properties, and a velocity dataset. The major difference between the HEMEW^S-3D database and the previous version HEMEW-3D is the source. It was fixed in the first version while in the current version, both its position and orientation vary. Each material describes the propagation domain used for one numerical simulation. It is built from non-stationary random fields and corresponds to the velocity of shear waves. All materials are 3D arrays of shape 32 x 32 x 32. A different source is used for each simulation. It is described by its coordinates and the three angles that parametrize its moment tensor. The velocity dataset contains the velocity wavefields simulated at the surface of each propagation domain. Each velocity field has 3 spatial components and 800 time steps (between 0 and 8s). A readme file gives more details on the data and can be found below (search for readme in the search bar)
DOI: 10.57745/mx0pux
title: Downscaled climate projections (1971-2100) for the Morava-Velicka river basin (Czechia)

description: Downscaled projections of temperature, precipitation, and reference evapotranspiration for the Morava river basin (which includes the Velicka DRN). 3 SSP scenarios and 5 climate models.
DOI: 10.57745/n74ygm
title: Phenotype of Atlantic salmon returning to river Scorff, Oir, Bresle, Frome and Tamar over the period 1969-2017 (smolt year)

description: This data includes individual records of body length (fork length, in mm), sea age at return (is1SW=1 for 1SW, is1SW=0 for 2SW), retrospective growth measurements performed on scales (in mm) and genetic sex, for a sample of adult Atlantic salmon returning to river Scorff, Oir, Bresle, Frome and Tamar. This data was produced,compiled and analysed as part of the Interreg project SAMARCH, to investigate long-term change in the marine growth of salmon originating from the Channel region, Southern Europe. Please refer to the associated paper for further details.
DOI: 10.57745/nyl036
title: Pseudomonas whole genome associated with rainbow trout - raw reads

description: This dataset contains short and long reads used for whole genome assembly of eight Pseudomonas strains isolated from rainbow trout fillets. DNA was extracted according to the procedure described in Oberlé et al. (submitted). All assembled genomes have been submitted to the NCBI website under the bioproject PRJNA1136410. A .zip dosser contains also all scripts used for genomes assembly and phylogenetic analyses
DOI: 10.57745/lfxgfo
title: MilkOligoCorpus, a rich semantic annotated resource for milk oligosaccharide complex information extraction

description: The MilkOligoCorpus is a dataset of 30 Pubmed abstracts and full-text extracts from scientific articles on the composition of milk oligosaccharides in mammalian species, manually annotated for training and evaluating information extraction tools. This corpus is designed to support the development and assessment of tools for named entity recognition, entity linking and relation extraction to extract the variability of milk oligosaccharides profiles. Named entity linking is essential for integrating information from diverse sources by mapping entity mentions to standard categories and associating them with unique identifiers. Thus, along with the corpus annotation we developed four semantic resources to address the absence of existing ontologies for several entities: (i) the Female parity thesaurus, (ii) the sample thesaurus, (iii) the MO methods thesaurus, (iv) the Oligo type thesaurus available at https://doi.org/10.57745/RA5DAC. An annotation schema was also developed, that identifies the entities of interest and establishes relations between them. This annotation schema serves as the foundation for the manual annotations along with guidelines, a 66-pages document that dictates the instructions on how to perform the annotations, available in the repository Z. This archive includes: (i) the HoloOligo corpus dataset, (ii) the list of the document annotated in the HoloOligo corpus, (iii) the three thesaurus required for the manual annotation, which are not available elsewhere, (iv) the annotation schema. An article detailing the development of the annotation schema and the creation of the gold standard corpus will be submited to PLOS One.
DOI: 10.57745/lxtwng
title: Terahertz cyclotron emission from two-dimensional Dirac fermions

description: Data associated to the following publication: Gebert, S., Consejo, C., Krishtopenko, S.S. et al. Terahertz cyclotron emission from two-dimensional Dirac fermions. Nat. Photon. (2023). https://doi.org/10.1038/s41566-022-01129-1
DOI: 10.57745/mxgcx5
title: Chroniques de débits journaliers du réseau de référence hydrologique Explore2

description: Sélection de chroniques de débits journaliers utilisé dans le cadre du projet Explore2 pour évaluer les modèles hydrologiques en France. Plus d'information sur ce réseau sont disponibles dans le rapport associé ici. Certaines des données du réseau utilisé ont été retiré car ne sont pas public.
DOI: 10.57745/nchgc8
title: RPG complété 2020 Régions Alsace et Lorraine

description: RPG complété 2020. Complète le RPG campagne 2020 pour les départements des régions Alsace et Lorraine (54, 55, 57, 67, 68, 88). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2022.
DOI: 10.57745/nje3jr
title: MassiveFold data for target T1276

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/nqjhuu
title: Fine root vessel and hydraulic traits across five root orders of 20 Chinese tropical tree species

description: Fine root vessel and hydraulic traits across five root orders of 20 Chinese tropical tree species. Sampling date: c.a. 3 weeks between Oct.- Nov. 2018 Sampling site: CAS - XTBG Bubeng plot
DOI: 10.57745/nrxpop
title: A freely accessible, adaptable hollow-fiber setup to reproduce first-order absorption: illustration with linezolid cerebrospinal fluid pharmacokinetic data

description: Context : In the study of the efficacy of antimicrobials, there is a need for in vitro models that enable reproduction of the clinical pharmacokinetics of said antimicrobials. Such a possibility is provided with what is known as the hollow-fiber infection model. The limitation of current hollow-fiber setups is that they do not enable simulation of pharmacokinetic profiles exhibiting an absorption phase without making the experimental setup unwieldy. Objective : In the attached publication we endeavoured to develop an experimental setup enabling in vitro simulation of pharmacokinetic profiles exhibiting an absorption phase with minimal modification of the traditional setup. We showed the correctness of our setup by simulating human pharmacokinetics of linezolid. In this dataset you can find linezolid concentration data used to validate our novel hollow-fiber setup to reproduce first order absorption. Reuse : The data could be reused to validate your local implementation of our experimental setup.
DOI: 10.57745/khghto
title: Multiple exposure speckle imaging contrast database obtained in vitro on microfluidic chips for various exposure, channel width, flows and optical magnification

description: The dataset is composed of speckle contrast images of microfluidic channels with different flows and different exposure times. Speckle contrast images are provided for two optical magnification under each experimental condition. The dataset has been used to train a convolutionnal neural network for inference of blood flow maps using multiple exposure speckle contrast images as inputs. ( Further details on experimental methods and contents of the dataset are provided in the readme.txt file)
DOI: 10.15468/dl.5bb35t
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "Geometry POLYGON((-55.21729 -27.09948,-46.86768 -27.09948,-46.86768 -21.45435,-55.21729 -21.45435,-55.21729 -27.09948))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myiozetetes cayanensis (Linnaeus, 1766)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204499-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.