cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26656657
title: Additional file 16 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 16: Table S31. SA-, JA-, ET- and ABA-pathway gene numbers in Arabidopsis and cassava.
DOI: 10.6084/m9.figshare.26656657.v1
title: Additional file 16 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 16: Table S31. SA-, JA-, ET- and ABA-pathway gene numbers in Arabidopsis and cassava.
DOI: 10.6084/m9.figshare.26656660
title: Additional file 17 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 17. Expression values for whitefly-regulated cassava DEGs. Table S32. log2FC and FDR values of tDEGs in ECU72 after whitefly infestation. Table S33. log2FC and FDR values of tDEGs in COL2246 after whitefly infestation. Table S34. log2FC and FDR values of gDEGs in ECU72 versus COL2246 after whitefly infestation.
DOI: 10.6084/m9.figshare.26656660.v1
title: Additional file 17 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 17. Expression values for whitefly-regulated cassava DEGs. Table S32. log2FC and FDR values of tDEGs in ECU72 after whitefly infestation. Table S33. log2FC and FDR values of tDEGs in COL2246 after whitefly infestation. Table S34. log2FC and FDR values of gDEGs in ECU72 versus COL2246 after whitefly infestation.
DOI: 10.6084/m9.figshare.26656663
title: Additional file 18 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 18. Numbers of DEGs identified in cassava after whitefly treatment. Table S35. Numbers of up- and down-regulated tDEGs in ECU72 and COL2246 during whitefly infestation. Table S36. Numbers of up- and down-regulated gDEGs in ECU72 versus COL2246 during whitefly infestation.
DOI: 10.6084/m9.figshare.26656663.v1
title: Additional file 18 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 18. Numbers of DEGs identified in cassava after whitefly treatment. Table S35. Numbers of up- and down-regulated tDEGs in ECU72 and COL2246 during whitefly infestation. Table S36. Numbers of up- and down-regulated gDEGs in ECU72 versus COL2246 during whitefly infestation.
DOI: 10.6084/m9.figshare.26656669
title: Additional file 20 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 20: Table S37. Enriched GO terms (biological process) in ECU72 versus COL2246 during whitefly infestation displayed in Additional file 19: Figure S13.
DOI: 10.6084/m9.figshare.26656669.v1
title: Additional file 20 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 20: Table S37. Enriched GO terms (biological process) in ECU72 versus COL2246 during whitefly infestation displayed in Additional file 19: Figure S13.
DOI: 10.6084/m9.figshare.26656672
title: Additional file 21 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 21. Numbers and percentages of hormone-regulated whitefly-responsive cassava DEGs. Table S38. Numbers and percents of hormone-regulated whitefly-responsive tDEGs in ECU72 and COL2246. Table S39. Numbers and percents of hormone-regulated WF-responsive gDEGs in ECU72 vs COL2246.
DOI: 10.6084/m9.figshare.26656672.v1
title: Additional file 21 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 21. Numbers and percentages of hormone-regulated whitefly-responsive cassava DEGs. Table S38. Numbers and percents of hormone-regulated whitefly-responsive tDEGs in ECU72 and COL2246. Table S39. Numbers and percents of hormone-regulated WF-responsive gDEGs in ECU72 vs COL2246.
DOI: 10.6084/m9.figshare.26656675
title: Additional file 22 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 22. Metabolite measurements in whitefly-infested cassava leaves. Table S40. Identification of defense hormones and their derivatives by untargeted metabolomics in whitefly-infested cassava. Table S41. Student’s T-test p-values comparing identified hormone levels in ECU72 versus COL2246 during whitefly infestation.
DOI: 10.6084/m9.figshare.26656675.v1
title: Additional file 22 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 22. Metabolite measurements in whitefly-infested cassava leaves. Table S40. Identification of defense hormones and their derivatives by untargeted metabolomics in whitefly-infested cassava. Table S41. Student’s T-test p-values comparing identified hormone levels in ECU72 versus COL2246 during whitefly infestation.
DOI: 10.6084/m9.figshare.26656684
title: Additional file 25 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 25. Enriched GO terms for whitefly and hormone gDEGs. Table S42. Enriched GO terms (biological process) in ECU72 versus COL2246 and in COL2246 versus ECU72 during whitefly infestation and hormone treatment displayed in Fig. 5. Table S43. Enriched GO terms (biological process) in ECU72 versus COL2246 and in COL2246 vs ECU72 during whitefly infestation and hormone treatment displayed in Additional file 27: Figure S16.
DOI: 10.6084/m9.figshare.26656684.v1
title: Additional file 25 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 25. Enriched GO terms for whitefly and hormone gDEGs. Table S42. Enriched GO terms (biological process) in ECU72 versus COL2246 and in COL2246 versus ECU72 during whitefly infestation and hormone treatment displayed in Fig. 5. Table S43. Enriched GO terms (biological process) in ECU72 versus COL2246 and in COL2246 vs ECU72 during whitefly infestation and hormone treatment displayed in Additional file 27: Figure S16.
DOI: 10.6084/m9.figshare.26656687
title: Additional file 26 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 26. Counts of enriched GO term IDs for whitefly and hormone gDEGs. Table S44. Numbers of genes associated with biological GO term categories associated with defense displayed in Fig. 5. Table S45. Numbers of genes associated with GO-term categories (not defense-related) displayed in Additional file 27: Figure S16.
DOI: 10.6084/m9.figshare.26656687.v1
title: Additional file 26 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 26. Counts of enriched GO term IDs for whitefly and hormone gDEGs. Table S44. Numbers of genes associated with biological GO term categories associated with defense displayed in Fig. 5. Table S45. Numbers of genes associated with GO-term categories (not defense-related) displayed in Additional file 27: Figure S16.
DOI: 10.6084/m9.figshare.26656699
title: Additional file 30 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 30: Table S46. Cassava’s lignin biosynthesis pathway gene nomenclature.
DOI: 10.6084/m9.figshare.26656699.v1
title: Additional file 30 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 30: Table S46. Cassava’s lignin biosynthesis pathway gene nomenclature.
DOI: 10.6084/m9.figshare.26656711
title: Additional file 34 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

description: Additional file 34: Table S47. qRT-PCR primers.
DOI: 10.1594/pangaea.742599
title: (Table 1) Chlorinity, sulfate concentrations, and isotopic composition of sulfur in waters from river and seawater mixing zones

description: Data on Cl and O2 were obtained by A.G. Rozanov and V.V. Bogdanovskaya.
DOI: 10.1594/pangaea.816378
title: (Table 5) Benthic foraminifera stable isotope composition at DSDP Hole 69-504
DOI: 10.1594/pangaea.780495
title: (Table 5-1) Sulfate reduction rate and isotope compositions of sulfur in Atlantic bottom sediments of Poligon III near the Congo River mouth
DOI: 10.1594/pangaea.810613
title: (Table 5) Rb, Sr, Sm, and Nd concentrations and Sr and Nd isotopic compositions of basalts at DSDP Leg 74 Holes
DOI: 10.1594/pangaea.806095
title: (Table 1) Lead isotopic composition and concentration at DSDP Leg 82 Holes

description: The aim of DSDP Leg 82 was to decipher the temporal and spatial evolution of Azores Plume. The Pb-isotopic results of this leg are rather complex, and can be summarized as follows:1. At a given site (561, 558), variations of Pb isotopic compositions are generally accompanied by major changes in trace-element ratios, indicating significant heterogeneity of the source region. There is a correlation between Pb isotopes and trace elements.2. In contrast, if all the data (i.e., all studied sites) of Leg 82 are considered together, no correlation can be discerned between Pb isotopes and trace elements. Site 556, especially, shows abnormal behavior.3. Leg 82 samples not only cover the entire range of Pb isotopic composition previously established for the Atlantic Ocean, but extend this field to more radiogenic values.4. The data are compatible with the hot-spot model proposed by Schilling (1975), if one considers that the Azores Plume itself is isotopically heterogeneous, and that it has been progressively contaminated to various degrees by upper mantle material.
description: Supplement to: Dupré, Bernard; Göpel, C; Bougault, Henri (1985): Lead isotopic variations in old ocean crust near the Azores. In: Bougault, H; Cande, SC; et al. (eds.), Initial Reports of the Deep Sea Drilling Project, Washington (U.S. Govt. Printing Office), 82, 497-500
DOI: 10.1594/pangaea.785886
title: (Table 2) Characteristics of bottom sediments from the Chukchi Sea
DOI: 10.1594/pangaea.809833
title: (Table 1) Interstitial water chemistry at DSDP Leg 76 Holes

description: Low salinities and strong opposing fluctuations between chlorinity and interstitial water d18O and dD characterize the region of gas-hydrate occurrence at Site 533. In addition to the hydrate recovered from 243 m sub-bottom, thin, diffuse layers of hydrate composing about 10% of the total pore space may have been cored around 290 m. Decomposition during recovery could account for the high oxygen isotope value (+2.80 per mil) and low chlorinity (17.21 g/kg) observed at this depth. High alkalinity and dissolved ammonia (71 meq/l and 33 mM, respectively) indicate substantial microbial activity.Chlorinity gradually increases with depth in the 1600-m-thick sediment column at Site 534, perhaps due to deepseated alteration-hydration reactions or to the presence of nearby evaporites. d18O and dD decrease with depth and are well correlated, suggesting that a common mechanism is fractionating both.
description: Supplement to: Jenden, Peter D; Gieskes, Joris M (1983): Chemical and isotopic composition of interstitial water from Deep Sea Drilling Project Sites 533 and 534. In: Sheridan, RE; Gradstein, FM; et al. (eds.), Initial Reports of the Deep Sea Drilling Project, Washington (U.S. Govt. Printing Office), 76, 453-461
DOI: 10.1594/pangaea.785602
title: (Table 6) Characteristics of suspended matter, microbial mats, and surface sediments in the littoral zone of the Kandalaksha Bay, White Sea
DOI: 10.1594/pangaea.875727
title: Stable isotopes of sediment core PS75/160-1
DOI: 10.1594/pangaea.875731
title: Stable isotopes of sediment core PS75/167-1
DOI: 10.1594/pangaea.774005
title: (Appendix Table AT3) δ¹⁸O and δ¹³C of Cibicidoides wuellerstorfi for ODP Hole 202-1239A

description: Sediment depth is given in mcd. For each isotope analysis, up to five specimens of Cibicidoides wuellerstorfi were picked from the 250 to 500 µm fraction.
DOI: 10.1594/pangaea.779114
title: (Table 1) K-Ag age of volcanites from the Sea of Okhotsk
DOI: 10.1594/pangaea.764079
title: (Table 1) Contents of CaCO3 and isotopic compositions of authigenic aragonites from mounds of the Lost City hydrothermal field
DOI: 10.1594/pangaea.770033
title: High resolution density, conductivity, deuterium, tritium, and δ¹⁸O of ice core VF79_core1
DOI: 10.1594/pangaea.802691
title: (Table 3) Interstitial water elemental composition at DSDP Leg 86 Holes

description: Interstitial water samples from Leg 86 were analyzed for Cl-, SO42-, Ca2+, Mg2+, K+ , Li+ , Sr2+, Mn2+, Si, NO3-, NH4+ , and d18O. The principal findings are as follows. (1) The chloride profiles consistently show a about 1.5% downcore increase to about 40 m sub-bottom depth. This increase is consistent with model profiles generated by considering the effects of variations in seawater salinity resulting from Pleistocene glaciation on pore-water composition. d18O profiles support this model. This agreement of model and observation precludes advection of the pore fluids at rates greater than 1 mm/yr. (2) Ca2+ and Mg2+ gradients are small relative to other Deep Sea Drilling Project sites, likely resulting from low diffusive fluxes through underlying chert horizons. (3) Other constituents exhibit profiles consistent with previous observations.
description: Supplement to: McDuff, Russell E (1985): The chemistry of interstitial waters, Deep Sea Drilling Project Leg 86. In: Heath GR; Burckle LH; et al. (eds.), Initial Reports of the Deep Sea Drilling Project, Washington (U.S. Govt. Printing Office), 86, 675-687
DOI: 10.1594/pangaea.774839
title: Stable isotopes of sediment core PS2561-2
DOI: 10.1594/pangaea.785884
title: (Table 1) Primary productivity, concentration of suspended matter, particulate and dissolved organic carbon concentrations, δ¹³C-Corg in suspended matter, and rate of dark CO2 assimilation in the water column of the Chukchi Sea
DOI: 10.1594/pangaea.745901
title: (Table 3) Chemical composition of hot fluids (end members) from the Q hydrothermal field, East Pacific Rise
DOI: 10.1594/pangaea.833419
title: Stable isotopes measured on Cibicidoides kullenbergi of sediment core PS75/056-1

description: The ages are based on the correlation to the LR04 benthic d18O stack. For ages based on correlation of the respective Fe content records to EDC dust contents on the AICC12 age scale, see Lamy et al., 2014, doi:10.1594/PANGAEA.826600.
DOI: 10.1594/pangaea.756715
title: Methane concentration and delta deuterium of methane from the NGRIP ice core

description: The causes of past changes in the global methane cycle and especially the role of marine methane hydrate (clathrate) destabilization events are a matter of debate. Here we present evidence from the North Greenland Ice Core Project ice core based on the hydrogen isotopic composition of methane [dD(CH4)] that clathrates did not cause atmospheric methane concentration to rise at the onset of Dansgaard-Oeschger (DO) events 7 and 8. Box modeling supports boreal wetland emissions as the most likely explanation for the interstadial increase. Moreover, our data show that dD(CH4) dropped 500 years before the onset of DO 8, with CH4 concentration rising only slightly. This can be explained by an early climate response of boreal wetlands, which carry the strongly depleted isotopic signature of high-latitude precipitation at that time.
description: Uncertainty for dD of CH4 is 3.4 per mil as derived from standard measurements as described in: Bock, M. et al., 2010, doi:10.1002/rcm.4429Please note, that the concentration data given here have a higher error (of 29 ppbv 1-sigma) compared to conventional methods due to the uncertainty of total air content determination of the dD isotope system.
description: Supplement to: Bock, Michael; Schmitt, Jochen; Möller, Lars; Spahni, Renato; Blunier, Thomas; Fischer, Hubertus (2010): Hydrogen isotopes preclude marine hydrate CH4 emissions at the onset of Dansgaard-Oeschger Events. Science, 328(5986), 1686-1689
DOI: 10.1594/pangaea.761049
title: (Table 3) Oxygen isotope ratios of benthic foraminifera from DSDP Hole 80-548

description: Presently, the intermediate depths of the North Atlantic Ocean are occupied by a great lens of warm, saline water whose source is the Mediterranean Sea. This water flows both westward and northward, finally entering the Norwegian Sea where it may contribute to the formation of North Atlantic Deep Water. The Late Neogene history of Mediterranean Outflow in the Atlantic can be monitored at DSDP-IPOD Site 548 on the continental slope Southwest of Ireland using benthic Foraminifera oxygen isotope values. Isotopic data from 154 samples indicate that Mediterranean water was absent from the mid-depth North Atlantic from 3.4 to 3.2 Ma ago. However, at about 2.9 Ma ago the isotopic values at Site 548 diverge from those recorded from the deep North Atlantic and they can be interpreted to indicate the appearance of a new water mass, possibly Mediterranean water, in the North Atlantic water column. This appearance may be related to climatic changes that occurred around the Mediterranean Basin at about 2.9 Ma ago. The analysis of 189 samples for grain-size distributions shows that a significant increase in the silt-size fraction occurs at the same level that isotopic analysis indicates a change in bottom waters at Site 548. The grainsize data support the hypothesis that mid-depth water-mass changes occurred at about 2.9 Ma ago.
description: For the age model of DSDP Hole 80-548 see Loubere (1987) data set: doi:10.1594/PANGAEA.761043.
description: Supplement to: Loubere, Paul (1987): Changes in mid-depth North Atlantic and Mediterranean circulation during the Late Pliocene - Isotopic and sedimentological evidence. Marine Geology, 77(1-2), 15-38
DOI: 10.1594/pangaea.785610
title: (Table 11-1) Values of dark carbon dioxide assimilation in supra bottom water and surface layer bottom sediments of the Kara Sea along the section from the Ob River mouth to the Saint Anna Trough in September 2007

description: Calculations were made according to the isotope mass balance equation: 100A=Bx+(100-x)C, where A is d13C-Corg of sediment; i' is d13C-Corg of microorganism biomass (-20.0 per mil); i¡ is d13C-Corg in suspended matter of the surface water layer ; x is percentage of newly formed Corg in total Corg content in the fluffy layer.
DOI: 10.1594/pangaea.820840
title: Stable isotopes measured on sediment core PS75/104-1
DOI: 10.1594/pangaea.861851
title: Acidification, not carbonation, is the major regulator of carbon fluxes in the coccolithophore Emiliania huxleyi

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-06-15.
DOI: 10.1594/pangaea.755844
title: Carbon isotope composition of lipids from bones and host sediments at some stations
DOI: 10.1594/pangaea.755841
title: Carbon isotope composition of lipids from bones and host sediments of ocean bottom at Station AK3-144
DOI: 10.1594/pangaea.770132
title: (Table 3.3.5) Organic carbon contents in suspended matter and its isotopic compositions, Ob and Yenisey estuaries and Kara Sea, September 1993
DOI: 10.1594/pangaea.805113
title: (Table 2) Composition of water samples from basement in DSDP Hole 83-504B
DOI: 10.15468/dl.y4qwf7
title: Occurrence Download

description: A dataset containing 1458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Corynephorus fasciculatus Boiss. & Reut.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 1458 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009362-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.771566
title: (Table 9.4.3) Concentrations of suspended matter in water samples from the 9°50'N EPR hydrothermal field and contents and isotopic compositions of organic carbon in suspended matter
DOI: 10.1594/pangaea.778496
title: (Appendix B3) Minor element concentration in ODP Hole 129-802A sediments
DOI: 10.1594/pangaea.756583
title: (Figure 2) Stable carbon and oxygen isotope records of ODP Site 208-1262

description: The upper Paleocene and lower Eocene are marked by several prominent (&gt; 1 per mill) carbon isotope (d13C) excursions (CIE) that coincide with transient global warmings, or thermal maxima, including the Paleocene-Eocene Thermal Maximum (PETM). The CIE, which are recorded mainly in marine sedimentary sequences, have also been identified in continental sequences, occurred episodically, and yet appear to be paced or triggered by orbital forcing. To constrain the timing and scale of the CIE relative to long-term baseline variability, we have constructed a 4.52 million year (myr) long, high-resolution (~ 3 kyr) bulk sediment carbon isotope record spanning the lower Eocene to upper Paleocene (C25r-C24n) from a pelagic sediment section recovered at ODP Site 1262 in the southeast Atlantic. This section, which was orbitally-tuned utilizing high-resolution core log physical property and geochemical records, is the most stratigraphically complete upper Paleocene to lower Eocene sequence recovered to date. Time-series analysis of the carbon isotope record along with a high-resolution Fe intensity record obtained by XRF core scanner reveal cyclicity with variance concentrated primarily in the precession (21 kyr) and eccentricity bands (100 and 400-kyr) throughout the upper Paleocene-lower Eocene. In general, minima in d13C correspond with peaks in Fe (i.e., carbonate dissolution), both of which appear to be in phase with maxima in eccentricity. This covariance is consistent with excess oceanic uptake of isotopically depleted carbon resulting in lower carbonate saturation during periods of high eccentricity. This relationship includes all late Paleocene and early Eocene CIE confirming pacing by orbital forcing. The lone exception is the PETM, which appears to be out of phase with the 400-kyr cycle, though possibly in phase with the 100-kyr cycle, reinforcing the notion that a mechanism other than orbital forcing and/or an additional source of carbon is required to account for the occurrence and unusual scale of this event.
description: The isotope records are composites of the splice from the A and B holes of Site 1262, and include published data for the PETM and ETM-2 (Lourens et al., 2005; Zachos et al., 2005).See also Westerhold et al. (2007) doi:10.1594/PANGAEA.603177Depth, sediment are meters below seafloor (mbsf)
description: Supplement to: Zachos, James C; McCarren, Heather K; Murphy, Brandon; Röhl, Ursula; Westerhold, Thomas (2010): Tempo and scale of late Paleocene and early Eocene carbon isotope cycles: Implications for the origin of hyperthermals. Earth and Planetary Science Letters, 299(1-2), 242-249