cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8131547.v1
title: Supplementary Material for: Topiramate plus Cooling for Hypoxic-Ischemic Encephalopathy: A Randomized, Controlled, Multicenter, Double-Blinded Trial

description: <b><i>Background and Objectives:</i></b> Therapeutic interventions to improve the efficacy of whole-body cooling for hypoxic-ischemic encephalopathy (HIE) are desirable. Topiramate has been effective in reducing brain damage in experimental studies. However, in the clinical setting information is limited to a small number of feasibility trials. We launched a randomized controlled double-blinded topiramate/placebo multicenter trial with the primary objective being to reduce the antiepileptic activity in cooled neonates with HIE and assess if brain damage would be reduced as a consequence. <b><i>Study Design:</i></b> Neonates were randomly assigned to topiramate or placebo at the initiation of hypothermia. Topiramate was administered via a nasogastric tube. Brain electric activity was continuously monitored. Topiramate pharmacokinetics, energy-related and Krebs’ cycle intermediates, and lipid peroxidation biomarkers were determined using liquid chromatography-mass spectrometry and MRI for assessing brain damage. <b><i>Results:</i></b> Out of 180 eligible patients 110 were randomized, 57 (51.8%) to topiramate and 53 (48.2%) to placebo. No differences in the perinatal or postnatal variables were found. The topiramate group exhibited less seizure burden in the first 24 h of hypothermia (topiramate, <i>n</i> = 14 [25.9%] vs. placebo, <i>n</i> = 22 [42%]); needed less additional medication, and had lower mortality (topiramate, <i>n</i> = 5 [9.2%] vs. placebo, <i>n</i> = 10 [19.2%]); however, these results did not achieve statistical significance. Topiramate achieved a therapeutic range in 37.5 and 75.5% of the patients at 24 and 48 h, respectively. A significant association between serum topiramate levels and seizure activity (<i>p</i> &lt; 0.016) was established. No differences for oxidative stress, energy-related metabolites, or MRI were found. <b><i>Conclusions:</i></b> Topiramate reduced seizures in patients achieving therapeutic levels in the first hours after treatment initiation; however, they represented only a part of the study population. Our results warrant further studies with higher loading and maintenance dosing of topiramate.
DOI: 10.17632/6np5d6ts53
title: Amaral et al., ET as affected by serum and embryokines

description: Data for the paper entitled "Actions of CSF2 and DKK1 on bovine embryo development and pregnancy outcomes are affected by composition of embryo culture medium" By Thiago Amaral et al.
DOI: 10.17632/jk8mygmdz8
title: The impact of sun exposure on atopic dermatitis: Insights from multivariable Mendelian randomization

description: Supplementary Materials.
DOI: 10.17632/pcwd93p72y
title: Cohesive models in loading/unloading situations

description: Three types of research data are provided in this Mendeley Dataset, which is linked to the research paper titled "Cohesive modeling in load-unload situations" (submitted for publication and currently under review). The first two types of data are software/code, while the third type is a summary of some results of finite element simulations where the first observations were made of a phenomenon that triggered the above mentioned research.
The three materials are located in three separate folders of this Mendeley Dataset named “Folder-1” – “Folder-3”. Please refer to Sections 1 and 2 of the Readme file located at the root of the Dataset for explanations on how to use the contents of Folders 1 and 2.

•	Folder-1: contains an Abaqus input file template to reproduce a numerical experiment presented in the mentioned research paper.

•	Folder-2: contains the source code of a UMAT subroutine to be used as a material model for cohesive elements in the Abaqus Finite Element Software, developed by the authors of the paper.

•	Folder-3:	Contains a summary of the first numerical results which motivated the above mentioned research.
DOI: 10.17632/rb4rjfhzp5
title: LINF_190012400

description: Arsenite methyltransferase-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/yj5rm3k3py
title: Flow cytometry data (1) from: Proteomic analysis of circulating immune cells identifies cellular phenotypes associated with COVID-19 severity, Potts et al.

description: Full associated publication: 'Proteomic analysis of circulating immune cells identifies cellular phenotypes associated with COVID-19 severity', Potts et al (2023). Raw 18-colour flow cytometry data characterising PBMC derived from cohort of 36 donors, including healthy controls and individuals infected with SARS-CoV-2. Data were utilised to validate upregulation of the markers CEACAM1, CEACAM6, CEACAM8, CD177, CD63 and CD89 in severe COVID-19 and phenotype immune cell populations upregulating these markers. Flow cytometry data were collected over 3 seaparate experiments on a Cytek Aurora spectral flow cytometer and are provided as unmixed and unprocessed .fcs files from the first experiment. These data can be analysed using the widely used FlowJo analysis software. Each data file is titled with indicators for the donor ID (CVXXXX) and whether the sample was stained with the antibody cocktail or left as an unstained control. Full metadata for each donor can be found in the associated publication.
DOI: 10.6084/m9.figshare.10266737.v3
title: Temperature data (32 sites)

description: Hourly temperature data for 32 sites in Ontario (Canada), measured between Jan 2011- Dec 2015. Data was compiled from both HOBO U23 Pro v2 Data Loggers (U23-001)) and weather stations in close proximity, and allowed for the estimation of the following annual variables: ‘<i>spring onset’</i>, ‘<i>calling date</i>’, ‘<i>active period</i>’: period between spring onset and calling date; and ‘<i>breeding period</i>’: period between the calling date and the last day of June.
DOI: 10.6084/m9.figshare.29137334.v1
title: GIS files inside damage patches

description: GIS files inside damage patches
DOI: 10.6084/m9.figshare.7415387.v1
title: Supplementary Material for: Factors Influencing Cyst Infection in Autosomal Dominant Polycystic Kidney Disease

description: <b><i>Background:</i></b> Cyst infection is a frequent and serious complication of autosomal dominant polycystic kidney disease (ADPKD) that is often difficult to treat. However, the factors influencing cyst infection are still unknown. Therefore, we investigated clinical factors related to the duration of hospitalization and death due to cyst infection. <b><i>Methods:</i></b> All ADPKD patients undergoing cyst drainage or nephrectomy or partial hepatectomy at Toranomon Hospital from January 2004 to March 2016, in whom cyst fluid analysis showed bacteria or neutrophils indicating definite cyst infection, were reviewed retrospectively. Factors influencing the duration of hospitalization and death due to cyst infection were analyzed. <b><i>Results:</i></b> A total of 243 patients with cyst infection were enrolled, including 104 men and 139 women (mean age: 62.6 ± 10.0 years). Seventeen patients died of cyst infection. Multivariate logistic regression analysis revealed that hepatomegaly, positive cyst contents culture, and the maximum white blood cell (WBC) count were significantly associated with death from cyst infection. Death was significantly more likely if patients had massive hepatomegaly (≥5,113.2 mL) compared with mild hepatomegaly (&lt; 1,898.7 mL; odds ratio 38.1; 95% CI 2.9–492.6, <i>p</i> = 0.0004). Multivariate Cox proportional hazards analysis revealed that older age, dialysis duration, hepatic transcatheter arterial embolization, maximum WBC count, and hepatomegaly were significantly associated with longer hospital stay for cyst infection, while female sex, nephrectomy, serum albumin, and serum cholinesterase were significantly associated with shorter hospital stay. Discharge alive from hospital was significantly associated with massive hepatomegaly versus mild hepatomegaly (hazard ratio 0.0072; 95% CI 0.0008–0.0659, <i>p</i> &lt; 0.0001). <b><i>Conclusions:</i></b> Hepatomegaly was strongly associated with both death and longer hospital stay due to cyst infection.
DOI: 10.17632/cw4fjs7d3n
title: Data for: Acute warming in winter eliminates chemical alarm responses in threatened Qinling lenok Brachymystax lenok tsinlingensis

description: Raw data for "Acute warming in winter eliminates chemical alarm responses in threatened Qinling lenok Brachymystax lenok tsinlingensis".
DOI: 10.17632/xt69cnwh56
title: 1Hz GPS Tracking Data

description: To date, GPS tracking data for minibus taxis has only been captured at a sampling frequency of once per minute. This is the first GPS tracking data captured on a per-second (1 Hz) basis. Minibus taxi paratransit vehicles in South Africa are notorious for their aggressive driving behaviour characterised by rapid acceleration/deceleration events, which can have a large effect on vehicle energy consumption. Infrequent sampling cannot capture these micro-mobility patterns, thus missing out on their effect on vehicle energy consumption (kWh/km). We hypothesised that to construct high fidelity estimates of vehicle energy consumption, higher resolution data that captures several samples per movement would be needed. Estimating the energy consumption of an electric equivalent (EV) to an internal combustion engine (ICE) vehicle is requisite for stakeholders to plan an effective transition to an EV fleet. Energy consumption was calculated following the kinetic model outline in "The bumpy ride to electrification: High fidelity energy consumption estimates for minibus taxi paratransit vehicles in South Africa". 

Six tracking devices were used to record GPS data to an SD card at a frequency of 1Hz. The six recording devices are based on the Arduino platform and powered from alkaline battery packs. The device can therefore operate independently of any other device during tests. The acquired data is separately processed after the completion of data recording. Data captured is initiated with the press of a button, and terminated once the vehicle reached the destination. Each recorded trip creates an isolated file. This allows for different routes to be separately investigated and compared to other recordings made on the same route. 

There are 62 raw trip files, all found in the attached 'raw data' folder under the corresponding route and time of day in which they were captured. The raw data includes date, time, velocity, elevation, latitude, longitude, heading, number of satellites connected, and signal quality. Data was recorded on three routes, in both directions, for a total of six distinct routes. Each route had trips recorded in the morning (before 11:30AM) , afternoon (11:30AM-4PM) and evening (after 4PM). 

The processed data is available in the 'Processed Data' folder. In addition to the raw data, these processed data files include the displacement between observations, calculated using Geopy's geodesic package, and the estimated energy provided by the vehicle's battery for propulsion, braking, and offload work. The python code for the kinetic model can be found in the attached GitHub link https://github.com/ChullEPG/Bumpy-Ride.

Future research can use this data to develop standard driving cycles for paratransit vehicles, and to improve the validity of micro-traffic simulators that are used to simulate per-second paratransit vehicle drive cycles between minutely waypoints.
DOI: 10.17632/zvmt38vy3n
title: Evolving food consumption patterns of rural and urban households in developing countries: A Bangladesh case

description: This dataset is consists of Bangladesh’s Household Income and Expenditure Survey (HIES) data collected in 2000, 2005 and 2010 by the Bangladesh Bureau of Statistics (BBS). In the first stage, the BBS selects primary sampling units (PSUs) consisting of specific geographical locations, and in the second stage, it randomly selects 20 households from each PSU that represent rural and urban areas. In HIES 2000, BBS selected 442 primary sampling units and surveyed 7,440 households of which 5,063 were from the rural areas and the rest were from urban areas. In HIES 2005, BBS selected 504 primary sampling units and surveyed 10,080 households of which 6,040 were from the rural areas, and the rest were from urban areas. In HIES 2010, 1,000 PSUs were selected and they surveyed 12,240 households of which 7,840 were from the rural areas and the rest were from urban areas. The HIES 2000, 2005 and 2010 data on household-level consumption is quite detailed. The consumption of food items both in quantity and expenditure was divided into 17 major food categories. The households were asked to describe their consumption habits during a two-week period. The major food categories were cereals, pulses, fish, eggs, meat, vegetables, milk and dairy products, sweets, oil and fats, fruits, drinks, sugar and molasses, tobacco and related items, spices and betel leaves, including betel nuts. An analysis of a complete demand system consisting of separate equations for all items in 17 major food categories would require a substantial amount of computer memory and time. For simplicity, the present study analyzed the demand systems considering a subset of food items commonly consumed by the sampled households: cereals, pulses, fish and vegetables. Among the cereals, rice (grain), and wheat (flour) and other rice and wheat products, such as rice cakes, biscuits and miscellaneous rice and wheat products are separately treated. As the five food categories are the most commonly-consumed items, and as the others are sporadically-consumed food items, policy implications based on the present study can provide deep insights into the evolution of the basic food consumption pattern in Bangladesh by the rural-urban affiliation of the households. Note that in HIES 2000 the expenditure information on vegetables for 84 households was missing; in HIES 2005 information on vegetable expenditure for 783 households was missing, and such information was missing for 1,229 households in HIES 2010. Thus, the dataset includes 28,384 households from HIES 2000, 2005 and 2010, of which 19,471 are rural households and 8,913 are urban households.
DOI: 10.6084/m9.figshare.1313643.v3
title: Figure 2 Highly effective fibrinolysis by a sequential synergistic combination of mini-dose tPA plus low-dose mutant proUK

description: Fig 2. Effect of C1-inibitor
DOI: 10.17632/crx7d22pym
title: Typicality of Functional Connectivity robustly captures motion artifacts in rs-fMRI across datasets, atlases, and preprocessing pipelines

description: Supporting data and codes for the article Typicality of Functional Connectivity robustly captures motion artifacts in rs-fMRI across datasets, atlases, and preprocessing pipelines (Kopal et al. 2020) . For more information contact the authors of the study.
DOI: 10.25386/genetics.13650392.v1
title: Supplemental Material for Rocha et al., 2021

description: Supplementary Figures and Tables for the manuscript <strong>Transcriptional control of the production of <em>Aspergillus fumigatus</em> conidia-borne secondary metabolite fumiquinazoline C<em> </em>important for phagocytosis protection by Rocha M. C. et al</strong><strong><br></strong>The Supplementary Tables include the primers used in the study to construct the strains (Table S1), to perform qPCR (Table S2) and ChIP-qPCR (Table S3).File S1 contains the data obtained in the NMR analyses to identify the FqC and FqD molecules.
DOI: 10.6084/m9.figshare.7012433.v2
title: Supplementary File S10 from Integrated human-virus metabolic stoichiometric modelling predicts host-based antiviral targets against Chikungunya, Dengue and Zika viruses.

description: Results from the literature analysis of antiviral compounds with metabolic targets (reactions). Compound names and descriptions are provided, as identified from the literature (references column). Targets are described in terms of the metabolic pathway and reaction they target (along with the reaction abbreviation from the metabolic model for the aforementioned reaction). Where identifiable, virus taxonomy is defined (species, genera and family), genomic material type (RNA) and genome sense (positive [+] or negative [-]) are shown.
DOI: 10.17632/2zxftbf8g9
title: [Paik et al 2023] [Earth's Future] Hysteretic behavior of global to regional monsoon area under CO2 ramp-up and ramp-down

description: Supplemental material for "Hysteretic behavior of global to regional monsoon area under CO2 ramp-up and ramp-down"
DOI: 10.17632/x4bmwhd8h6
title: Effect of spesolimab on sustained disease control in patients with generalized pustular psoriasis: Post hoc analysis of the EFFISAYIL® 2 study

description: Supplement material for "Effect of spesolimab on sustained disease control in patients with generalized pustular psoriasis: Post hoc analysis of the EFFISAYIL® 2 study", published in the Journal of the American Academy of Dermatology (https://doi.org/10.1016/j.jaad.2025.01.089)
DOI: 10.17632/j2fsx26x2y
title: LLM-generated Candidate Detection Rules: YAML outputs for 123 exploits

description: This dataset presents LLM-generated candidate detection rules in YAML format, produced by testing two commercial Large Language Models (LLMs): GPT-4o and Claude 3.5 Sonnet. The dataset is organized hierarchically, with directories for each model. The model directory contains six parameter variation folders named according to their 'temperature_top_p' configuration (e.g., 0.5_1, 0_0, 0_1, etc.), where the first value represents temperature and the second represents top_p. Each parameter folder contains YAML text files representing the model's output when tasked with generating candidate detection rules for 123 different exploits. The filenames correspond to exploit IDs from ExploitDB or PacketStorm, enabling direct reference to the original exploit samples.
DOI: 10.6084/m9.figshare.12993536.v2
title: hawaii volume

description: hawaii tourism volume
DOI: 10.17632/2n9899x2c4
title: Correlation of Carrying angle with Pinch Strength ,Grip Strength, upper limb strength and wrist function in young college going students

description: The carrying angle, formed by the arm and forearm, influences hand function and upper limb strength. However, research is limited on how an increased carrying angle, common in young individuals, impacts grip strength, pinch strength, upper limb strength, and wrist function. This study explores this gap, aiming to understand how increased carrying angle affects these aspects of upper limb function. This knowledge can improve clinical assessments and guide rehabilitation strategies for various elbow conditions.This study aimed to investigate the impact of increased carrying angle on hand grip and pinch strength, upper limb strength, and wrist function in young adults. This cross-sectional study investigated the impact of carrying angle on hand and pinch strength, upper limb strength, and wrist function in young adults (18-24 years old) at a physiotherapy lab in India. Participants with no elbow or wrist issues were recruited (n=266). Carrying angle, hand grip strength, pinch strength, and wrist function were assessed using a universal full-circle goniometer, dynamometer, pinch meter, and a questionnaire. The seated push-up test evaluated upper limb strength. Statistical analysis will determine if the increased carrying angle affects these measurements.
The study investigated the effect of increased carrying angle on hand and pinch strength, upper limb strength, and wrist function in 266 young adults. While there wasn't a significant link between carrying angle and upper limb strength or perceived wrist function, a weak but significant negative correlation was found between carrying angle and both hand grip strength and pinch strength. This suggests that increased carrying angle may decrease grip and pinch strength in young adults. These findings can inform clinical assessments of elbow conditions. This study found that increased carrying angle in young adults is associated with decreased hand grip and pinch strength, but not upper limb strength or wrist function. This suggests potential muscle weakness with increased carrying angle, warranting further investigation for improved clinical assessments
DOI: 10.17632/69zj8vg6f2
title: Psychosocial Mental Health Analysis

description: In this research, we strive to delve into the intricacies of individuals' psychosocial mental health challenges by engaging directly with their narratives. By allowing participants to articulate their experiences in their own language and manner, we aim to capture the nuances and complexities of their struggles authentically.

The process of translating and shaping these descriptions into English not only facilitates analysis but also ensures accessibility and consistency in understanding across diverse audiences. Through the summarization of each description, we condense the rich and varied accounts into concise representations while preserving the essence of the participants' experiences.

Categorizing the problems into distinct categories enables us to organize and analyze the data effectively. The delineation into problem and psychological categories provides a structured framework for understanding the multifaceted nature of mental health challenges. Moreover, recording demographic information such as age and gender allows for demographic-specific analyses and insights.

By focusing on a broad spectrum of issues—from common stressors like work-related pressures to more complex interpersonal dynamics such as marital conflicts—we aim to capture the breadth and depth of psychological distress experienced by individuals. Recognizing the significance of these challenges in contemporary society, our research endeavors to contribute to the body of knowledge surrounding mental health and well-being.

Through our systematic approach to data collection, analysis, and interpretation, we seek to offer valuable insights into the prevalence, patterns, and underlying factors of psychosocial mental health issues. By amplifying the voices of those directly impacted, we hope to foster greater empathy, understanding, and support for individuals navigating these challenges.

Ultimately, our research aspires to inform evidence-based interventions, policies, and initiatives aimed at promoting mental health and enhancing the quality of life for individuals worldwide. Through collaborative efforts and interdisciplinary dialogue, we endeavor to advance the field of mental health research and social change.

Our commitment to understanding and addressing psychosocial mental health issues extends beyond mere observation. We recognize the imperative to translate our findings into actionable insights that can inform interventions, programs, and policies aimed at alleviating mental distress. By grounding our research in the lived experiences of individuals, we aim to bridge the gap between academic inquiry and real-world impact. 

In conclusion, our research endeavors to go beyond the surface level of understanding to illuminate the complexities of psychosocial mental health. By leveraging data-driven insights and fostering collaborative partnerships, we aim to drive meaningful progress towards a society where mental well-being is prioritized, supported, and safeguarded
DOI: 10.17632/vmr9zdvrxw
title: Data for: Comparison of Sustainability Models in Development of Electric Vehicles in Tehran Using Fuzzy TOPSIS Method

description: Sustainability Models in Development of Electric Vehicles
DOI: 10.6084/m9.figshare.14113439.v1
title: STL files of fracture network models and their permeability

description: We simulated flow in fracture network using OpenFOAM. The fracture networks were given in STL files. The simulated permeability are in simulation_permeability.csv
DOI: 10.6084/m9.figshare.7428974.v1
title: sift data

description: dataset for test P-HDBF