cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13891779
title: Table 1 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes

description: Table 1. Opalinid species investigated in the present study. All localities are from China. Morphological identification of each species was carried out in the articles indicated in the ‘reference’ column.
SpeciesHostPrevalenceLocalityReferenceOpalina undulata Nie* 1935Fejervarya limnocharis (Gravenhorst* 1829) Iskandar* 19987.7% (22/285)Diaocha Lake* Hubei ProvinceLi et al. (2018)Opalina triangulata Metcalf* 1923F. limnocharis21.5% (9/42)Diaocha Lake* Hubei ProvinceWang et al. (2019)Opalina japonica Sugiyama* 1920Rana chensinensis David * 187533.3% (4/12)Xinbin County* Liaoning ProvinceUnpublishedOpalina obtrigonoidea Metcalf* 1923Duttaphrynus melanostictus (Schneider* 1799) Frost et al. * 200631.4% (11/35)Yubei City* Chongquin ProvinceZhao et al. (2020)Opalina longa Bezzenberger* 1904 (= Cepedea longa)aF. limnocharis35.8% (76/ 212)Honghu Lake* Hubei ProvinceLi et al. (2017a)Protoopalina limnocharis Nie * 1932F. limnocharis25.6% (32/125)Meishan County* Sichuan ProvinceZou et al. (2018)Protoopalina pingi Nie* 1935Pelophylax nigromaculatus (Hallowell* 1861) Fei et al. * 200540.4% (42/104)Honghu Lake* Hubei ProvinceLi et al. (2014)Zelleriella orientalis Nie* 1935Microhyla ornate (Duméril & Bibron* 1841) Boulenger* 188216.2% (6/37)Nanning City* Guangxi ProvinceUnpublishedZelleriella sp.Hyla chinensis Gunther * 185811.1% (2/18)Sanming City* Fujian ProvinceUnpublished
aThe initial identification of this species as Cepedea longa followed the proposal by Metcalf (1923). See Discussion section for the justification of the change.
description: Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 270 in Zoological Journal of the Linnean Society 201 (2) on page 270, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
DOI: 10.5281/zenodo.13891782
title: Table 2 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes

description: Table 2. Primers used for PCRs and sequencing (F* forward; R* reverse).
PrimerSequenceReferenceMedlinA (F)5 ʹ -AACCTGGTTGATCCTGCCAGT-3%Medlin et al. (1988)MedlinB (R)5 ʹ -TGATCCTTCTGCAGGTTCACCTAC-3%Medlin et al. (1988)SSU-LSU-F (F)5 ʹ -TCGCACCTACCGATTGGATG-3%This studySSU-LSU-R (R)5 ʹ -GAAAAGATAACTCTTCCTAG-3%This studyM28S-F (F)5 ʹ -TAGCCCTGAAAATGGATGGCGCT-3%This study28S-4R (R)5 ʹ -TTCTGACTTAGAGGCGTTCAG-3%Moreira et al. (2007)
description: Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 271 in Zoological Journal of the Linnean Society 201 (2) on page 271, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
DOI: 10.5281/zenodo.13891781
title: Table 2 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes

description: Table 2. Primers used for PCRs and sequencing (F* forward; R* reverse).
PrimerSequenceReferenceMedlinA (F)5 ʹ -AACCTGGTTGATCCTGCCAGT-3%Medlin et al. (1988)MedlinB (R)5 ʹ -TGATCCTTCTGCAGGTTCACCTAC-3%Medlin et al. (1988)SSU-LSU-F (F)5 ʹ -TCGCACCTACCGATTGGATG-3%This studySSU-LSU-R (R)5 ʹ -GAAAAGATAACTCTTCCTAG-3%This studyM28S-F (F)5 ʹ -TAGCCCTGAAAATGGATGGCGCT-3%This study28S-4R (R)5 ʹ -TTCTGACTTAGAGGCGTTCAG-3%Moreira et al. (2007)
description: Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 271 in Zoological Journal of the Linnean Society 201 (2) on page 271, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
DOI: 10.5281/zenodo.13891785
title: Table 4. Posterior means and 95 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes

description: Table 4. Posterior means and 95% credibility intervals (CIs) of divergence times (DTs) of Opalinata lineages (in million years) inferred in the TimeTree analysis. Three groups of calibration time points were used to calibrate the molecular clock. Group A (‘sequence evolution’): calibration points with uniform distribution were assigned for the origin of Stramenopiles (1469.6–812.4 Mya) and Ciliophora (1344.0–627.3 Mya) and to the split of Apicomplexa and Dinoflagellata (1098.8–501.9 Mya). Group B (‘host class constraints’): the maximum bounds of the origin of Amphibia (355.7 Mya) and Sauropsida (322.4 Mya) were assigned to the nodes where Karotomorpha (parasite of amphibians) and Proteromonas (parasite of lizards) branched off* respectively. Group C (‘anuran family constraints’): a maximum bound was assigned to the nodes where Protoopalina * Zelleriella * and Opalina branched off* based on the estimated maximum time of emergence of the most ancient anuran family in which species of each genus have been cited (respectively: Ascaphidae * 204 Mya; Microhylidae * 116.3 Mya; Bombinatoridae and Alytidae * 196 Mya). Four scenarios were analysed by combining the groups of calibration time points.
Scenario 1 (A)Scenario 2 (A + B)Scenario 3 (A + C)Scenario 4 (A + B + C)DT (95% CI)DT (95% CI)DT (95% CI)DT (95% CI)Opalinata586.7 (304.6–1130.1)515.7 (267.0–996.0)586.7 (304.6–1129.8)515.7 (267.0–996.1)Karotomorpha351.7 (165.2–748.8)309.2 (178.8–355.7)351.7 (165.6–746.9)309.2 (178.8–355.7)Opalinida250.4 (110.7–566.5)220.1 (119.3–286.8)250.4 (112.2–558.6)220.1 (119.3–286.8)Protoopalina119.4 (48.6–293.5)105.0 (56.1–196.6)119.4 (55.1–204.0)105.0 (56.0–196.9)Zelleriella – Opalina split49.7 (17.4–142.3)43.7 (20.1–95.0)49.7 (19.8–124.7)43.7 (20.4–93.5)
description: Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 279 in Zoological Journal of the Linnean Society 201 (2) on page 279, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
DOI: 10.5281/zenodo.13891786
title: Table 4. Posterior means and 95 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes

description: Table 4. Posterior means and 95% credibility intervals (CIs) of divergence times (DTs) of Opalinata lineages (in million years) inferred in the TimeTree analysis. Three groups of calibration time points were used to calibrate the molecular clock. Group A (‘sequence evolution’): calibration points with uniform distribution were assigned for the origin of Stramenopiles (1469.6–812.4 Mya) and Ciliophora (1344.0–627.3 Mya) and to the split of Apicomplexa and Dinoflagellata (1098.8–501.9 Mya). Group B (‘host class constraints’): the maximum bounds of the origin of Amphibia (355.7 Mya) and Sauropsida (322.4 Mya) were assigned to the nodes where Karotomorpha (parasite of amphibians) and Proteromonas (parasite of lizards) branched off* respectively. Group C (‘anuran family constraints’): a maximum bound was assigned to the nodes where Protoopalina * Zelleriella * and Opalina branched off* based on the estimated maximum time of emergence of the most ancient anuran family in which species of each genus have been cited (respectively: Ascaphidae * 204 Mya; Microhylidae * 116.3 Mya; Bombinatoridae and Alytidae * 196 Mya). Four scenarios were analysed by combining the groups of calibration time points.
Scenario 1 (A)Scenario 2 (A + B)Scenario 3 (A + C)Scenario 4 (A + B + C)DT (95% CI)DT (95% CI)DT (95% CI)DT (95% CI)Opalinata586.7 (304.6–1130.1)515.7 (267.0–996.0)586.7 (304.6–1129.8)515.7 (267.0–996.1)Karotomorpha351.7 (165.2–748.8)309.2 (178.8–355.7)351.7 (165.6–746.9)309.2 (178.8–355.7)Opalinida250.4 (110.7–566.5)220.1 (119.3–286.8)250.4 (112.2–558.6)220.1 (119.3–286.8)Protoopalina119.4 (48.6–293.5)105.0 (56.1–196.6)119.4 (55.1–204.0)105.0 (56.0–196.9)Zelleriella – Opalina split49.7 (17.4–142.3)43.7 (20.1–95.0)49.7 (19.8–124.7)43.7 (20.4–93.5)
description: Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 279 in Zoological Journal of the Linnean Society 201 (2) on page 279, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
DOI: 10.5281/zenodo.13891788
title: Table 5 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes

description: Table 5. Types of short tandem repeats (STRs) found in the sequences from opalinids.
TypeCharacteristicsExampleSequence (position)DirectHead to tailPerfectAll units equalTAATAATAATAATAAOpalina undulata MN 638758 (3423)ImperfectWith substitutions and/or indelsAGTTT ATTTT AATTTZelleriella sp. MN638763 (1762)OverlappedSTR includes basesTTTA[T ATTAT]/ [TAT TAT] TATProtoopalina limnocharis MN 638759 (1493/1497)InvertedHead to headPerfectAll units equalTTTATAATATTTOpalina triangulata MN 638762 (470)ImperfectWith substitutions and/or indelsTTATTATTATTATTTTTTTTATTA(-) TATTATTOpalina japonica MN 638764 (73)
description: Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 281 in Zoological Journal of the Linnean Society 201 (2) on page 281, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
DOI: 10.5281/zenodo.13891751
title: Table 2 in Impacts of Wastewater Effluent on Temperate Stream Fish Assemblage Structure

description: Table 2. Similarity percentage (SIMPER) showing species contributions (Contrib%) to dissimilarity between East and West Fork sites. West and East Fork average abundance (Av.Abund) columns list the transformed mean abundances for species in both forks, ‘Diss/SD’ represents the ratio between the average dissimilarity and standard deviation, and the cumulative % (Cum.%) column lists the cumulative dissimilarity across species with a 90% cutoff. The average dissimilarity between the East and West Forks was 58.74%.
SpeciesWest Fork Av.AbundEast Fork Av.AbundAv.DissDiss/SDContrib%Cum.%Etheostoma spectabile4.382.3413.71.5323.3223.32Etheostoma flabellare02.2611.971.7320.3843.7Chrosomus erythrogaster1.360.246.230.7810.6154.3Noturus exilis0.321.156.161.1910.4964.79Cottus bairdii1.321.725.971.2710.1774.96Campostoma sp.1.150.455.621.189.5784.54Luxilus zonatus0.710.23.820.846.5191.05
description: Published as part of Hoyer, Kelly A., & Geheber, Aaron D., 2024, Impacts of Wastewater Effluent on Temperate Stream Fish Assemblage Structure, pp. 222 in Ichthyology & Herpetology 112 (2) on page 222, DOI: 10.1643/i2022089, http://zenodo.org/record/13749214
DOI: 10.5281/zenodo.13891752
title: Table 4. Principal component loading values for the four substrate categories measured across all 26 in Impacts of Wastewater Effluent on Temperate Stream Fish Assemblage Structure

description: Table 4. Principal component loading values for the four substrate categories measured across all 26 sites.
VariablesPC1PC2PC3PC4% gravel0.634440.508570.100280.5734% pebble0.20598– 0.8296– 0.04960.51658% cobble– 0.67280.137690.490520.53647% boulder– 0.32010.18476– 0.86420.3414
description: Published as part of Hoyer, Kelly A., & Geheber, Aaron D., 2024, Impacts of Wastewater Effluent on Temperate Stream Fish Assemblage Structure, pp. 223 in Ichthyology & Herpetology 112 (2) on page 223, DOI: 10.1643/i2022089, http://zenodo.org/record/13749214
DOI: 10.5281/zenodo.13891755
title: Table 3. Principal component loading values for seven habitat variables across 13 in Impacts of Wastewater Effluent on Temperate Stream Fish Assemblage Structure

description: Table 3. Principal component loading values for seven habitat variables across 13 sites.
VariablePC1PC2PC3PC4PC5PC6PC7Mean depth0.480710.280630.176750.442770.312530.604230.01098Max depth0.527340.23170.019650.212370.15811– 0.77130.05367Discharge0.14880.53788– 0.43110.37747– 0.5990.02831– 0.0247% gravel0.52703– 0.0162– 0.1975– 0.5051– 0.33510.179730.53227% pebble– 0.0551– 0.5723– 0.40950.527490.10692– 0.02080.46008% cobble– 0.2920.167690.666030.16685– 0.1803– 0.08060.61335% boulder– 0.32040.47152– 0.3636– 0.23490.60197– 0.00340.35384
description: Published as part of Hoyer, Kelly A., & Geheber, Aaron D., 2024, Impacts of Wastewater Effluent on Temperate Stream Fish Assemblage Structure, pp. 223 in Ichthyology & Herpetology 112 (2) on page 223, DOI: 10.1643/i2022089, http://zenodo.org/record/13749214
DOI: 10.5281/zenodo.13891787
title: Table 5 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes

description: Table 5. Types of short tandem repeats (STRs) found in the sequences from opalinids.
TypeCharacteristicsExampleSequence (position)DirectHead to tailPerfectAll units equalTAATAATAATAATAAOpalina undulata MN 638758 (3423)ImperfectWith substitutions and/or indelsAGTTT ATTTT AATTTZelleriella sp. MN638763 (1762)OverlappedSTR includes basesTTTA[T ATTAT]/ [TAT TAT] TATProtoopalina limnocharis MN 638759 (1493/1497)InvertedHead to headPerfectAll units equalTTTATAATATTTOpalina triangulata MN 638762 (470)ImperfectWith substitutions and/or indelsTTATTATTATTATTTTTTTTATTA(-) TATTATTOpalina japonica MN 638764 (73)
description: Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 281 in Zoological Journal of the Linnean Society 201 (2) on page 281, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
DOI: 10.5281/zenodo.13891790
title: Table 6 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes

description: Table 6. Number and proportion of shared short tandem repeats (STRs) in the rDNA of opalinids. For each species* the total number of STRs (T) and the proportion of STRs species specific (not shared with other sequences) (S)* STRs shared by species of the same genus (G)* and STRs shared by species of different genera (C) are given. Incomplete sequences (those lacking ≥100 bases at the 3 ʹ or 5 ʹ end) are shown in parentheses. Abbreviation: N/A* sequence not available.
SpeciesSSU rDNAITS15.8S rDNAITS2LSU rDNATSGCTSGCTSGCTSGCTSGCOPALINIDA(Protoopalina axonucleata)4513.335.651.1N/AN/AN/AN/A(Protoopalina intestinalis)5211.538.550.0N/AN/AN/AN/AProtoopalina limnocharis6814.729.455.91931.668.4050.020.080.01625.075.00.01773.447.549.1Protoopalina pingi6814.729.455.92035.065.0050.020.080.01520.080.00.01794.546.948.6Zelleriella orientalis950.041.059.0220.095.54.590.033.366.7230.091.38.72033.523.672.9Zelleriella sp.950.041.059.0220.095.54.590.033.366.7230.091.38.72126.122.771.2Opalina undulata10412.533.753.82680.815.43.880.037.562.52544.048.08.021310.319.370.4Opalina triangulata10311.634.054.42479.116.74.280.037.562.52646.246.27.62077.719.872.5Opalina obtrigonoidea10412.533.753.82781.514.83.780.037.562.52646.246.27.621712.018.969.1Opalina japonica10311.634.054.42580.016.04.080.037.562.52951.741.46.921511.219.169.7Opalina longa10513.433.353.32075.020.05.080.037.562.52544.048.08.021310.319.370.4PROTEROMONADIDAKarotomorpha sp. a*b5236.563.5N/AN/AN/AN/AProteromonas lacertae b5641.158.9N/AN/AN/AN/A
aThe data presented correspond to the sequence with accession number DQ431242;the Karotomorpha sp. DQ431243 sequence is partial and has not been considered for this analysis.
bData are available for only one species per genus;STRs are therefore considered in two categories* as species/genus specific* or as shared with other genera.
description: Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 282 in Zoological Journal of the Linnean Society 201 (2) on page 282, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
DOI: 10.15468/dl.ytmdaw
title: Occurrence Download

description: A dataset containing 14509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Sceloporus grammicus Wiegmann, 1828",
 "Year 1950-2024"
 ]
}

 The dataset includes 14509 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041534-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5ww77b6g
title: MassIVE MSV000096028 - GNPS - DogFood_MS/MS analysis on Orbitrap in positive-ion mode
title: DogFood_MS/MS analysis on Orbitrap in positive-ion mode
DOI: 10.15468/dl.nh45wr
title: Occurrence Download

description: A dataset containing 25489 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phaseolus vulgaris var. vulgaris"
 ]
}

 The dataset includes 25489 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041535-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzttx8
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Hyalinobatrachium valerioi (Dunn, 1931)"
 ]
}

 The dataset includes 59 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041537-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhsr8k
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Dominican Republic",
 "Geometry POLYGON((-69.95291 18.48934,-69.94731 18.4897,-69.94888 18.49345,-69.94917 18.49544,-69.94749 18.49726,-69.94752 18.4978,-69.94866 18.49882,-69.94853 18.49916,-69.94713 18.49978,-69.9461 18.5001,-69.94585 18.50072,-69.94615 18.50126,-69.94704 18.50144,-69.94764 18.50129,-69.94829 18.50059,-69.95063 18.50029,-69.9518 18.50027,-69.95232 18.50048,-69.95265 18.50028,-69.95247 18.49997,-69.95169 18.49953,-69.95157 18.49931,-69.95175 18.49918,-69.95278 18.49936,-69.9534 18.49908,-69.95389 18.49827,-69.95437 18.49752,-69.95591 18.49816,-69.95683 18.49853,-69.95871 18.49868,-69.95947 18.48867,-69.95801 18.48819,-69.95604 18.48851,-69.95291 18.48934))",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 402 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041538-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jddvck
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is e1050db2-9faf-4d72-b860-295debaf9d2a",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 24 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041540-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pb84y4
title: Occurrence Download

description: A dataset containing 137827 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Material citation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vespa velutina Lepeletier, 1836"
 ]
}

 The dataset includes 137827 records from 825 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041516-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4knug
title: Occurrence Download

description: A dataset containing 93048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Oncorhynchus nerka (Walbaum, 1792)"
 ]
}

 The dataset includes 93048 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041536-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68wkwt
title: Occurrence Download

description: A dataset containing 114464 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncorhynchus nerka (Walbaum, 1792)"
 ]
}

 The dataset includes 114464 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041525-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13020/nm3a-w471
title: VCF truth sets of variants inserted into simulated equine genomes (90 VCFs)

description: Simulated data is an inexpensive and timely alternative to the generation of novel whole genome sequence (WGS) data. We generated artificial DNA sequence reads representing simulated equine genomes which contain predetermined genetic variants that can be used as a benchmark dataset to evaluate genomic processing tools. The VCFs contained in this repository contain the benchmark set of genetic variants for each of the simulated genomes that were created. These VCFs can be used in conjunction with the simulated sequences which are also publicly available to evaluate WGS processing tools.
DOI: 10.15468/dl.52pmzs
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aspidoscelis scalaris (Cope, 1892)",
 "Year 2004-2024"
 ]
}

 The dataset includes 260 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041541-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.