cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25574151.v1
title: Supplementary Material for: Clinical and pathological features of pilomatrixoma in children: a retrospective study

description: Introduction Pilomatrixoma is a benign skin neoplasm that is common in children and is often misdiagnosed. This study aimed to summarize the clinical and pathological features of pilomatrixoma in children. Methods Data on demographic information, clinical and pathological features, diagnosis, and treatment of 171 patients with pilomatrixoma from Shenzhen Baoan Women's and Children's Hospital were collected and analyzed retrospectively. Results The mean age of the patients was 5.7 (standard deviation (SD) = 3.9) year-old, and there were two age peaks (≤1 year-old, 5-11 years old) and two age valleys (2-4 years old, ≥ 12 years old). The mean disease course was 9.3 (SD = 14.1) months, 69.0%, 86.5%, and 95.3% of the patients’ disease course in 6 months, 12 months, and 24 months, respectively. The mean tumor volume is 0.6 (SD = 1.0) cm3, 81.3% of the patients’ tumor volume ≤ 1.0 cm3. Tumors were distributed sequentially in the head and neck (77.2%), upper limbs (12.9%), trunk (7.6%), and lower limbs (2.3%). The correct rates of clinical and ultrasonic diagnosis were 50.9% and 38.6%, respectively. The two most common pathological features of pilomatrixoma were shadow cells (99.4%) and basaloid cells (94.7%). There were no significant differences in age, disease course, or tumor volume between the male and female patients (P &gt; 0.05). The age and tumor volume of the patients in different body parts were significantly different (P1 = 3.10E-05 and P2 = 5.60E-05, respectively). The correlation between the disease course and tumor volume was positively significant (P ≤ 0.05). There was a significantly correlation between the disease course and tumor volume in patients with tumors at upper limbs (P = 0.03). Conclusion The age of children with pilomatrixoma presented two peaks and two valleys. Most patients had disease courses in 24 months and with tumor volumes ≤ 1.0 cm3. The correct rates of clinical and ultrasonic diagnosis were relatively low. The head and neck are the most common distribution sites of pilomatrixoma, shadow cells and basaloid cells are the most common pathological features. The tumor volume is positively correlated with disease course in patients with pilomatrixoma.
DOI: 10.6084/m9.figshare.28556915.v1
title: TabS4_scRNASeq_18starved-23fed_2kVars.DESeq2_lib-state.csv

description: Differential Expression analysis results from comparing 18 starved LHLK neurons with 23 fed LHLK neurons
DOI: 10.6084/m9.figshare.26413483.v1
title: Clustering Techniques Methods

description: Understanding customers is a pivotal aspect of customer relationship management that directly influences a company's long-term success. By comprehensively understanding consumer traits, businesses can better target promotional and advertising campaigns, leading to increased long-term earnings. As an investigator for a telecommunications company, the goal is to delve deeper into customer characteristics. The task involves conducting market basket analysis on customer data to uncover significant relationships between consumer purchases. This approach aims to enhance operational efficiency and inform strategic organizational decisions, ultimately driving better customer engagement and improved financial outcomes.
DOI: 10.6084/m9.figshare.27677967.v2
title: raw data：IscR-tmRNA Regulatory Axis Plays a Key Role in Multiple Stress Response and Pathogenicity in Aeromonas veronii

description: this raw data is used for illustration of IscR-tmRNA Regulatory Axis Plays a Key Role in Multiple Stress Response and Pathogenicity in Aeromonas veronii
DOI: 10.6084/m9.figshare.5129098.v1
title: Supplementary Material for: Acute Kidney Injury in Cardiorenal Syndrome Type 1 Patients: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> We evaluated the epidemiology and outcome of acute kidney injury (AKI) in patients with cardiorenal syndrome type 1 (CRS-1) and its subgroups: acute heart failure (AHF), acute coronary syndrome (ACS) and after cardiac surgery (CS). <b><i>Summary:</i></b> We performed a systematic review and meta-analysis. CRS-1 was defined by AKI (based on RIFLE, AKIN and KDIGO), worsening renal failure (WRF) and renal replacement therapy (RRT). We investigated the three most common clinical causes of CRS-1: AHF, ACS and CS. Out of 332 potential papers, 64 were eligible - with AKI used in 41 studies, WRF in 25 and RRT in 20. The occurrence rate of CRS-1, defined by AKI, WRF and RRT, was 25.4, 22.4 and 2.6%, respectively. AHF patients had a higher occurrence rate of CRS-1 compared to ACS and CS patients (AKI: 47.4 vs. 14.9 vs. 22.1%), but RRT was evenly distributed among the types of acute cardiac disease. AKI was associated with an increased mortality rate (risk ratio = 5.14, 95% CI 3.81-6.94; 24 studies and 35,227 patients), a longer length of stay in the intensive care unit [LOS<sub>ICU</sub>] (median duration = 1.37 days, 95% CI 0.41-2.33; 9 studies and 10,758 patients) and a longer LOS in hospital [LOS<sub>hosp</sub>] (median duration = 3.94 days, 95% CI 1.74-6.15; 8 studies and 35,227 patients). Increasing AKI severity was associated with worse outcomes. The impact of CRS-1 defined by AKI on mortality was greatest in CS patients. RRT had an even greater impact compared to AKI (mortality risk ratio = 9.2, median duration of LOS<sub>ICU</sub> = 10.6 days and that of LOS<sub>hosp</sub> = 20.2 days). <b><i>Key Messages:</i></b> Of all included patients, almost one quarter developed AKI and approximately 3% needed RRT. AHF patients experienced the highest occurrence rate of AKI, but the impact on mortality was greatest in CS patients.
DOI: 10.6084/m9.figshare.19674645.v1
title: Biodiversity of ComEd Electric transmission Rights of Way in Northern Illinois

description: Data describing the biodoversity of birds, plants, and pollinators in electric powerline corridor rights of way (ROWs) and surrounding residential yards. ROWs were maintained as lawn, managed as prairie, or allowed to grow freely with woody vegetation removed on a 5-year cycle ("old-field"). The sheet titled "metadata" describes the data included in each worksheet.
DOI: 10.6084/m9.figshare.19368923.v1
title: Factor loads

description: Factor loads
DOI: 10.6084/m9.figshare.7704566.v1
title: Spectral power distributions

description: Spectral power distributions for simulated and commercially-available light sources.<br>
DOI: 10.6084/m9.figshare.3793458.v3
title: Data from our prospective observational clinical study using mini volume loading test (mVLT) using 2.5 ml kg-1 boluses of crystalloid for indication of perioperative changes in patient's hydration level

description: We prospectively collected data in 48 adult ASA II physical state patients who had elective primary total knee arthroplasty (TKA). As part of a larger RCT, with an aim to evaluate peri-operative changes in patients' hydration level, the mini volume loading test (mVLT) was applied before induction of spinal anaesthesia (pre-operative) and also 24-h later (post-operative). The mVLT protocol implied mini fluid challenges consisting of Ringer’s acetate boluses followed by 5 min periods without fluid loading. Six 2.5 ml kg<sup>-1</sup> boluses were infused. Haemoglobins - invasive (aHb, arterial) and non-invasive (SpHb or cHb, capillary), cardiac stroke volume (SV) deviation (%), perfusion index (PI) and its deviation from baseline (PID) were measured before and after each mini fluid challenge and also 20 min after the last bolus. We present our data. Several variables were obtained by mathematically processing haemoglobin values: plasma dilution (PD), plasma dilution efficacy (PDE), arterio-capillary plasma dilution efficacy difference (acPED) as well as relative difference between the paired invasive and non-invasive haemoglobin measurements (RD) and absolute RD (ARD). We post the related math, too.
DOI: 10.6084/m9.figshare.24645360.v2
title: Systematic map from the <i>Global review of the Important Plant Areas approach</i>

description: Dataset of publications included in the systematic map undertaken for the <i>Global review of the Important Plant Areas approach</i>, a chapter in the PhD thesis <i>Plant conservation in Colombia: </i><i>Interdisciplinary approaches for the protection of useful plant species</i> (Kor, 2023).This systematic map can be filtered by a range of variables including location, publication year, language, study country, and IPA focus, with links to all literature sources provided where available. Please read the "Notes" sheet in the workbook for the search strategy and inclusion criteria used and definitions of the categories assigned to the variables.
DOI: 10.6084/m9.figshare.25461052.v1
title: EasyFR: Automated Functional Requirements Generation

description: We delve into the potential for automating the drafting of functional requirements from basic conceptual ideas, expressed through keywords and their syntactic roles, aiming to streamline the process of writing and revising SRS. We present EasyFR, an approach designed to distill high-frequency Semantic Role Labeling (SRL) templates from existing public functional requirements statements, recommend suitable templates for specific keyword-role combinations, and integrate these functions with the powerful ChatGLM-6B open language model to automate the generation of functional requirements drafts.
DOI: 10.6084/m9.figshare.26354590.v1
title: Supplementary Material for: lncRNA SOX21-AS1 promotes activation of BV2 cells via epigenetically silencing of SOCS3 and aggravates Parkinson's disease

description: Background: LncRNAs perform a crucial impact on microglia’s activation in Parkinson's disease (PD). Here, our purpose is to probe the function and involved mechanism of lncRNA SOX21-AS1 on microglial activation in PD.
Methods: Mice were treated with MPTP, and BV2 cells were treated with LPS/ATP to build PD animal and cell models. Genes’ expression was measured using RT-qPCR, immunoblotting, and IHC. ELISA was applied for testing inflammatory factors’ levels. Cell viability and apoptosis were tested using kits. RIP and RNA pull-down assay were utilized for monitoring the bond of SOX21-AS1 to EZH2, and ChIP was applied for affirming the bond between EZH2 and SOCS3’s promoter.
Results: The expression of SOX21-AS1 and SOCS3 was abnormal in PD cell and animal models. Inhibition of SOX21-AS1 repressed LPS/ATP-induced activation in BV2 cells and nerve damage caused by activated BV2 cells, alleviating the pathological features of PD mice. Further studies found that SOX21-AS1 epigenetically inhibited SOCS3 by recruiting EZH2 to SOCS3 promoter. SOX21-AS1 overexpression partially offset the repressive impact of SOCS3 enhancement on BV2 cell activation and the protective effect on nerve cells.
Conclusion: SOX21-AS1 enhances LPS/ATP-induced activation of BV2 cells and nerve damage caused by activated BV2 cells though recruiting EZH2 to SOCS3’s promoter, thereby alleviating PD progression. Our research supplies new potential target for curing PD.
DOI: 10.6084/m9.figshare.13841834.v1
title: Raw Data.xlsx

description: This document contains data on the gyroscope, accelerometer, and complementary filters.
DOI: 10.6084/m9.figshare.27607056.v1
title: Transformers Significantly Improve Splice Site Prediction (Figure data)

description: This repository contains the numerical source data underlying the figures and results presented in the manuscript <i>"Transformers Significantly Improve Splice Site Prediction."</i> The dataset includes:<b>CSV files</b>: Data for the ROC and PRC curves featured in Figures 1 and 3.<b>TSF file</b>: Splice site predictions for CREBRF, as depicted in Figure 2.<b>Reference figures</b>: The corresponding figures for clarity and comparison.
DOI: 10.6084/m9.figshare.14931858.v1
title: Supplementary Material for: Long Noncoding RNA PMS2L2 Downregulates miR-24 through Methylation to Suppress Cell Apoptosis in Ulcerative Colitis

description: <b><i>Background:</i></b> Ulcerative colitis (UC) is an inflammatory bowel disease characterized by chronic inflammation of the colon. It has been reported that PMS2L2 plays protective roles in inflammatory injury. This study aimed to investigate the role of the long noncoding RNA PMS2L2 in UC. <b><i>Methods:</i></b> Sixty-two patients with UC as well as 62 age- and gender-matched healthy controls were enrolled. Expressions of PMS2L2 and miR-24 in plasma from UC patients and healthy controls were determined by RT-qPCR. The interaction between PMS2L2 and miR-24 was predicted by bioinformatics and confirmed by RNA immunoprecipitation and RNA pull-down. The role of PMS2L2 in the regulation of miR-24 gene methylation was analyzed by methylation-specific PCR. The effects of PMS2L2 and miR-24 on the expressions of apoptosis-related proteins were detected by Western blots. <b><i>Results:</i></b> PMS2L2 was downregulated in the plasma of UC patients compared to that in age- and gender-matched healthy control. In human colonic epithelial cells (HCnEpCs), PMS2L2 overexpression inhibited miR-24 expression via promoting the methylation of miR-24 gene. In contrast, miR-24 overexpression failed to affect PMS2L2. In the detection of cell apoptosis, PMS2L2 overexpression could promote the expression of Bcl-2 and inhibit Bax, cleaved-caspase-3, and cleaved-caspase-9 expressions stimulated by LPS. Flow cytometer revealed that PMS2L2 elevation suppressed the apoptosis of HCnEpCs induced by LPS, but miR-24 aggravated the apoptosis. PMS2L2 overexpression rescued the detrimental effect of miR-24 on cell apoptosis. <b><i>Conclusion:</i></b> PMS2L2 may downregulate miR-24 via methylation to suppress cell apoptosis in UC.
DOI: 10.6084/m9.figshare.15772068.v1
title: Endoscopy video consent data

description: After being consented for upper endoscopy and colonoscopy, English and Spanish speaking patients filled out a questionnaire to assess their comprehension of the information covered in the consent process. Some patients watched a video in addition to standard verbal consent prior to filling out the questionnaire.
DOI: 10.6084/m9.figshare.26990335.v1
title: Additional file 6 of Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

description: Additional file 6: Table S19. SSRs in RNA-seq of P. buccinoides. Related to Figure S12.
DOI: 10.6084/m9.figshare.8128175.v1
title: Experimental Study on the Compressive Strength, Damping, and ITZ Properties of Modified Recycled Aggregate Concrete

description: <b>Supplementary material from </b><b>“</b><b>Experimental Study on the Compressive Strength, Damping, and ITZ Properties of Modified Recycled </b><b>Aggregate </b><b>Concrete</b><b>”</b><b></b>
DOI: 10.6084/m9.figshare.8111189.v1
title: postrad_tumor_VEP_UCSC.vcf.gz

description: postrad tumor variants
DOI: 10.6084/m9.figshare.1513838.v1
title: Retinopic mapping analysis

description: Matlab functions to analyse travelling wave retinotopic mapping data. Note that these functions are very old and their use is not recommended.
DOI: 10.6084/m9.figshare.16840429.v2
title: ACCURACY ASSESSMENT OF ALOS WORLD 3D-30M DEMS USING FIELD DATA FROM LAGOS AND FEDERAL CAPITAL TERRITORY, NIGERIA

description: Elevation data set from AW3D30 DEM for two location within Nigeria:Lagos state and Abuja
DOI: 10.6084/m9.figshare.17701109.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 22
DOI: 10.6084/m9.figshare.26508734.v1
title: Going negative when spoiled for choice? Destabilizing and boomerang effects of negative political messaging in multiparty systems with multimember districts

description: Classical electoral behaviour theories have associated possible benefits of negative campaigning with two-party plurality systems due to their zero-sum nature. Nevertheless, negative campaigning is a widely used electoral strategy outside of these contexts, despite scant evidence of its benefits for political parties and candidates who employ it. Our research question is simple – is negative campaign messaging effective for attackers in multiparty systems with multimember districts? Or does it create a ‘boomerang effect’ in this context, for which the producer of the message faces a backlash? Multiparty systems with multimember districts should, according to the literature, be scenarios where the effects of negative campaigning are most complex if not unpredictable. This paper uses Facebook political messages to inform a survey experiment design that tests the effects of negative political messaging on voters. We employ this survey in Ireland, which uses the single transferable vote, an electoral system which magnifies outcome uncertainty for attackers. Our results suggest that negative messaging in this context produces both the intended effect and a boomerang effect for the sponsor of the message. These countervailing results suggest a net null effect for the efficacy of negative messaging.
DOI: 10.6084/m9.figshare.7948169.v1
title: gVCF_NA20858

description: 1000 Genomes gVCF mapped to hs37d5 for NA20858. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.20708965.v3
title: adenomyosis data file 1

description: datasheet for the article "development and validation of sonological classification and scoring system for uterine adenomyosis- a pilot study" for publication in F1000 researchadenomyosis data file 1 Abbreviations used in adenomyosis data file 1 CR no.- clinical reference number Parity-PL- parity, living issue HMB- heavy menstrual bleeding DM-diabetes mellitus HTN-hypertension H-histopathology U-ultrasonography F- fundus of uterus A – anterior wall of uterus P – posterior wall of uterus L- lateral wall of uterus LL- left lateral wall of uterus RL- right lateral wall of uterus TAH- total abdominal hysterectomy TLH- total laparoscopic hysterectomy VH- vaginal hysterectomy PFR- pelvic floor repair
DOI: 10.6084/m9.figshare.25195427.v1
title: covid_eco_epi_var

description: The COVID-19 pandemic has caused over 7.02 million deaths as of January 2024 and profoundly affected most countries’ Gross Domestic Product (GDP). Here, we study the interaction of SARS-CoV-2 transmission, mortality, and economic output between January 2020 and December 2022 across 25 European countries.
DOI: 10.6084/m9.figshare.7063637.v1
title: random_mutations.tsv.gz

description: Randomised somatic mutations for 50 donors
DOI: 10.48420/25343440.v1
title: Polarised-light ReLaserIMD data, metadata and analysis scripts for manuscript "I<sub>2</sub>BODIPY as a new photoswitchable spin label for orientation-resolved light-induced pulsed EPR dipolar spectroscopy exploiting magnetophotoselection effects"

description: Polarised-light ReLaserIMD data, metadata and analysis scripts for manuscript "I<sub>2</sub>BODIPY as a new photoswitchable spin label for orientation-resolved light-induced pulsed EPR dipolar spectroscopy exploiting magnetophotoselection effects". Experimental and computational methods are described in the Supplementary Information of the manuscript. Manuscript DOI to be added after acceptance.<br>ReLaserIMD_polarised<br>dipolar_traces - Raw and phased ReLaserIMD traces acquired at the different magnetic field values for molecule [1], with polarised laser. &gt; Field_3428G - 3PLaserIMDlfovernightPH - Raw traces obtained with light polarised parallel to the magnetic field; observation feld 3428G. - 3PLaserIMDlfovernightPV - Raw traces obtained with light polarised perpendicular to the magnetic field; observation feld 3428G. &gt; Field_3453G - LaserIMD80K_PH - Raw traces obtained with light polarised parallel to the magnetic field; observation feld 3453G. - LaserIMD80K_PV - Raw traces obtained with light polarised perpendicular to the magnetic field; observation feld 3453G.
DOI: 10.6084/m9.figshare.22361008.v1
title: Supplementary Material for: Cost-effectiveness of pit and fissure sealing at schools for caries prevention in China: A Markov modeling analysis

description: The World Health Organization states that the application of pit and fissure sealants (PFS) is an effective way to prevent dental caries. Estimates of potential health and economic impacts of PFS upon school-age children provide crucial evidence to support the extension of PFS coverage to all target populations. The China Children's Oral Disease Comprehensive Intervention Project was launched in 2009 to provide free oral health examinations, PFS application, and oral health education for children aged seven to nine years. However, the national-level health and economic impacts of the program are unclear. To provide higher-quality evidence at the national level in China, we developed a multi-perspective, multi-state Markov model to estimate the cost and effect of PFS application to prevent dental caries. The total cost of the PFS project was 2.087 billion CNY, which can prevent 16.06 million PFMs from caries lesions. Compared with no intervention, PFS application was cost-effective from payer and society perspectives (BCR=1.22 from the payer’s perspective, BCR=1.91 from the societal perspective). The incremental cost-effectiveness ratio (ICER) from both perspectives was negative (-61.46 CNY from the payer's perspective, and -125.75 CNY from the societal perspective), indicating that PFS was cost-effective and cost-saving. Expanding the coverage of PFS application in school can be a more cost-effective strategy for caries prevention in China.
DOI: 10.6084/m9.figshare.6463304.v2
title: 2017 Shanghai Vaccine Hesitancy Scale

description: This study include a Discrete Choice Experiment and a survey using the Vaccine Hesitancy Scale (as developed by the World Health Organization Strategic Advisory Group of Experts on Immunization (https://doi.org/10.1016/j.vaccine.2015.04.037).
DOI: 10.6084/m9.figshare.28377734.v1
title: Maternal Bonding

description: <pre>Study title: Supportive and Dignified Maternity Care<br>Location: Sindh, Pakistan<br>Data collection time: 19th September 2020 to 14th December 2020<br>Target respondent: Women who gave birth at study sites.<br>Sample size: 310<br>Sampling strategy: Women were recruited at health facilities after childbirth. Information regarding maternal bonding was collected at 42 days postpartum<br>Data dictionary: Dataset is completely labelled with variable and numeric codes<br>Software: Dataset is uploaded in Stata version 16.1.<br>Ethical approval: The study was approved by the Institutional Review Board of the London School of Hygiene and Tropical Medicine (Reference ID: 17928) and Aga Khan University (Reference ID: 2019-1683-5607)</pre>
DOI: 10.6084/m9.figshare.3554112.v1
title: Supplement 3. Mean values for six floral traits measured on 117 species of Pedicularis.

description: File List Supplement_3.txt (md5: 58fcc20cb35347b6d564a5007cfeda9e) Description Supplement_3.txt is a tab-separated file. It contains trait values used for species level analyses. 1. species name<br> 2. phyllotaxy<br> 3. corolla tube range low<br> 4. corolla tube range high<br> 5. corolla tube mean<br> 6. galea beak range low<br> 7. galea beak range high<br> 8. galea beak mean<br> 9. presence/absence of nectar<br> 10. position of stigma contact on bumble bee<br> 11. orientation of bumble bee<br> 12. most common corolla color<br> 13. alternate coding of stigma contact position<br> 14. pollination observed vs. inferred
DOI: 10.6084/m9.figshare.22770365.v1
title: HESS_Blaurock_2024.xlsx

description: Data used in the study entitled:<br>Hydrological Controls on Temporal Contributions of Three Nested Forested Subcatchments to the Export of Dissolved Organic Carbon