cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4707316
title: PARV4 prevalence, phylogeny, immunology and coinfection with HIV, HBV and HCV in a multicentre African cohort

description: This file contains supporting metadata for a study of human parvovirus 4 ('PARV4') in southern Africa. We compiled data from three centres (Kimberley and Durban in South Africa, and Gaborone in Botswana), by recruiting adults and children with and without HIV infection (n=695). We sought evidence of previous or current PARV4 infection, using IgG and PCR respectively, and screened for coinfection with HBV and HCV. <br>We have uploaded the following files (xls and csv format):(i) The entire cohort descriptors;(ii) PCR primers that we used to screen plasma pools for HCV and PARV4;<br>(iii) Panel of overlapping peptides (OLPs) spanning the PARV4 proteome used to screen PBMCs using IFN-gamma ELISpot assays;(iv) The results of screening 14 PARV4 IgG-positive subjects using this ELISpot approach. <br><br>Ethics approval for this study was granted by the University of KwaZulu-Natal Review Board, Oxford Research Ethics Committee, Massachusetts General Hospital Review Board, Harvard School of Public Health, Botswana Ministry of Health, Ethics Committee of the University of the Free State, and by site-specific research and development committees in the UK.
DOI: 10.6084/m9.figshare.4707187
title: Environmental correlates of internal coloration in anurans vary throughout space and lineages

description: Internal organs and structures of ectotherms have melanin-containing cells that confer coloration to them. Several studies have analyzed the developmental origin, role in immunity, and hormonal regulation of these cells. However, little is known about how environmental variables influence the distribution and quantity of organ coloration. Internal melanin protects organs against environmental fluctuations. Therefore, it may influence species distribution throughout space. Here, we addressed how environmental variables (temperature, UV, and photoperiod) influence the internal coloration of anuran species after controlling for spatial and phylogenetic autocorrelations. We used the extended version of RLQ ordination that accounts for phylogenetic and spatial autocorrelation when testing for the effect of environmental variables on organ coloration in species. Coloration in all organs was correlated with phylogeny. However, the coloration of the heart, kidneys, and rectum of hylids, R. schneideri, some Leptodactylus, and Proceratophrys were influenced by mean temperature of warmest quarter and photoperiod, whereas that of the testicle, lumbar parietal peritoneum, lungs, and mesenterium of Leiuperinae, Hylodidae, Adenomera, most Leptodactylus were influenced by UVB and temperature variation. Therefore, the amount of internal melanin seems to be a key trait influencing species distribution of anurans throughout space, since it can protect internal organs against the deleterious effect of high UV-B, temperature variation, and photoperiod.
DOI: 10.6084/m9.figshare.4707112
title: hands_run3_I1

description: Sequence data from: "Comparison of Methods for Evaluation of Hygiene Effects on the Hand Microbiome: Standard Culture-Based versus Culture-Independent Methods."
DOI: 10.6084/m9.figshare.4707112.v1
title: hands_run3_I1

description: Sequence data from: "Comparison of Methods for Evaluation of Hygiene Effects on the Hand Microbiome: Standard Culture-Based versus Culture-Independent Methods."
DOI: 10.6084/m9.figshare.4707187.v1
title: Environmental correlates of internal coloration in anurans vary throughout space and lineages

description: Internal organs and structures of ectotherms have melanin-containing cells that confer coloration to them. Several studies have analyzed the developmental origin, role in immunity, and hormonal regulation of these cells. However, little is known about how environmental variables influence the distribution and quantity of organ coloration. Internal melanin protects organs against environmental fluctuations. Therefore, it may influence species distribution throughout space. Here, we addressed how environmental variables (temperature, UV, and photoperiod) influence the internal coloration of anuran species after controlling for spatial and phylogenetic autocorrelations. We used the extended version of RLQ ordination that accounts for phylogenetic and spatial autocorrelation when testing for the effect of environmental variables on organ coloration in species. Coloration in all organs was correlated with phylogeny. However, the coloration of the heart, kidneys, and rectum of hylids, R. schneideri, some Leptodactylus, and Proceratophrys were influenced by mean temperature of warmest quarter and photoperiod, whereas that of the testicle, lumbar parietal peritoneum, lungs, and mesenterium of Leiuperinae, Hylodidae, Adenomera, most Leptodactylus were influenced by UVB and temperature variation. Therefore, the amount of internal melanin seems to be a key trait influencing species distribution of anurans throughout space, since it can protect internal organs against the deleterious effect of high UV-B, temperature variation, and photoperiod.
DOI: 10.6084/m9.figshare.4707106
title: hands_run3_R2

description: Sequence data from: "Comparison of Methods for Evaluation of Hygiene Effects on the Hand Microbiome: Standard Culture-Based versus Culture-Independent Methods."
DOI: 10.6084/m9.figshare.4707316.v1
title: PARV4 prevalence and coinfection with HIV, HBV and HCV in a multicentre African cohort

description: This file contains supporting metadata for a study of human parvovirus 4 ('PARV4') in southern Africa. We compiled data from three centres (Kimberley and Durban in South Africa, and Gaborone in Botswana), by recruiting adults and children with and without HIV infection (n=695). We sought evidence of previous or current PARV4 infection, using IgG and PCR respectively, and screened for coinfection with HBV and HCV. <br>Ethics approval for this study was granted by the University of KwaZulu-Natal Review Board, Oxford Research Ethics Committee, Massachusetts General Hospital Review Board, Harvard School of Public Health, Botswana Ministry of Health, Ethics Committee of the University of the Free State, and by site-specific research and development committees in the UK.
DOI: 10.6084/m9.figshare.4707106.v1
title: hands_run3_R2

description: Sequence data from: "Comparison of Methods for Evaluation of Hygiene Effects on the Hand Microbiome: Standard Culture-Based versus Culture-Independent Methods."
DOI: 10.6084/m9.figshare.4707316.v3
title: PARV4 prevalence, phylogeny, immunology and coinfection with HIV, HBV and HCV in a multicentre African cohort

description: This file contains supporting metadata for a study of human parvovirus 4 ('PARV4') in southern Africa. We compiled data from three centres (Kimberley and Durban in South Africa, and Gaborone in Botswana), by recruiting adults and children with and without HIV infection (n=695). We sought evidence of previous or current PARV4 infection, using IgG and PCR respectively, and screened for coinfection with HBV and HCV. <br>We have uploaded the following files (xls and csv format):(i) The entire cohort descriptors;(ii) PCR primers that we used to screen plasma pools for HCV and PARV4;<br>(iii) Panel of overlapping peptides (OLPs) spanning the PARV4 proteome used to screen PBMCs using IFN-gamma ELISpot assays;(iv) The results of screening 14 PARV4 IgG-positive subjects using this ELISpot approach. <br><br>Ethics approval for this study was granted by the University of KwaZulu-Natal Review Board, Oxford Research Ethics Committee, Massachusetts General Hospital Review Board, Harvard School of Public Health, Botswana Ministry of Health, Ethics Committee of the University of the Free State, and by site-specific research and development committees in the UK.
DOI: 10.6084/m9.figshare.4707316.v2
title: PARV4 prevalence and coinfection with HIV, HBV and HCV in a multicentre African cohort

description: This file contains supporting metadata for a study of human parvovirus 4 ('PARV4') in southern Africa. We compiled data from three centres (Kimberley and Durban in South Africa, and Gaborone in Botswana), by recruiting adults and children with and without HIV infection (n=695). We sought evidence of previous or current PARV4 infection, using IgG and PCR respectively, and screened for coinfection with HBV and HCV. <br>Ethics approval for this study was granted by the University of KwaZulu-Natal Review Board, Oxford Research Ethics Committee, Massachusetts General Hospital Review Board, Harvard School of Public Health, Botswana Ministry of Health, Ethics Committee of the University of the Free State, and by site-specific research and development committees in the UK.
DOI: 10.6084/m9.figshare.4707031
title: Coptis chinensis transcriptome results

description: Coptis chinensis transcriptome results
DOI: 10.6084/m9.figshare.4707031.v1
title: Coptis chinensis transcriptome results

description: Coptis chinensis transcriptome results
DOI: 10.6084/m9.figshare.4706491
title: cafe ecomic

description: Les données des étudiants du groupe A2 des TP d'ecomic en 2017<br>
DOI: 10.6084/m9.figshare.4706491.v1
title: cafe ecomic

description: Les données des étudiants du groupe A2 des TP d'ecomic en 2017<br>
DOI: 10.6084/m9.figshare.4706239
title: Optokinetic nystagmus reflects perceptual directions in the onset binocular rivalry in Parkinson's disease

description: We share datasets analysed in our paper "Optokinetic nystagmus reflects perceptual directions in the onset binocular rivalry in Parkinson's disease" in PLoS ONE 2017.<br>Each mat file was recoded from a subject.The file names represent 1) category of subject - "c" for control, "p" for patient, and 2) subject ID.<br>A structural data, which has a layer for Run, and block underneath, is contained in each mat file. <br>
DOI: 10.6084/m9.figshare.4706239.v1
title: Optokinetic nystagmus reflects perceptual directions in the onset binocular rivalry in Parkinson's disease

description: We share datasets analysed in our paper "Optokinetic nystagmus reflects perceptual directions in the onset binocular rivalry in Parkinson's disease" in PLoS ONE 2017.<br>Each mat file was recoded from a subject.The file names represent 1) category of subject - "c" for control, "p" for patient, and 2) subject ID.<br>A structural data, which has a layer for Run, and block underneath, is contained in each mat file. <br>
DOI: 10.6084/m9.figshare.4706167
title: hands_run3_R1

description: Sequence data from: "Comparison of Methods for Evaluation of Hygiene Effects on the Hand Microbiome: Standard Culture-Based versus Culture-Independent Methods."
DOI: 10.6084/m9.figshare.4706167.v1
title: hands_run3_R1

description: Sequence data from: "Comparison of Methods for Evaluation of Hygiene Effects on the Hand Microbiome: Standard Culture-Based versus Culture-Independent Methods."
DOI: 10.6084/m9.figshare.4705564
title: hands_run1_I1

description: Sequence data from: "Comparison of Methods for Evaluation of Hygiene Effects on the Hand Microbiome: Standard Culture-Based versus Culture-Independent Methods."
DOI: 10.6084/m9.figshare.4705564.v1
title: hands_run1_I1

description: Sequence data from: "Comparison of Methods for Evaluation of Hygiene Effects on the Hand Microbiome: Standard Culture-Based versus Culture-Independent Methods."
DOI: 10.15468/mfg85v
title: Pseudechiniscus in Japan: re-description of Pseudechiniscus asper Abe et al., 1998 and description of Pseudechiniscus shintai sp. nov.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Voncina, Katarzyna, Kristensen, Reinhardt M., Gasiorek, Piotr (2020): Pseudechiniscus in Japan: re-description of Pseudechiniscus asper Abe et al., 1998 and description of Pseudechiniscus shintai sp. nov. Zoosystematics and Evolution 96 (2): 527-536, DOI: http://dx.doi.org/10.3897/zse.96.53324, URL: http://dx.doi.org/10.3897/zse.96.53324
DOI: 10.15468/9vexzx
title: An illustrated catalogue of Rudolf Sturany's type specimens in the Naturhistorisches Museum Wien, Austria (NHMW): more Red Sea species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Albano, Paolo G., Schnedl, Sara-Maria, Eschner, Anita (2020): An illustrated catalogue of Rudolf Sturany's type specimens in the Naturhistorisches Museum Wien, Austria (NHMW): more Red Sea species. Zoosystematics and Evolution 96 (2): 571-576, DOI: http://dx.doi.org/10.3897/zse.96.54707, URL: http://dx.doi.org/10.3897/zse.96.54707
DOI: 10.15468/hs4ncg
title: Review of Macropodia in the Black Sea supported by molecular barcoding data; with the redescription of the type material, observations on ecology and epibiosis of Macropodia czernjawskii (Brandt, 1880) and notes on other Atlanto-Mediterranean species of Macropodia Leach, 1814 (Crustacea, Decapoda, Inachidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Spiridonov, Vassily A., Simakova, Ulyana V., Anosov, Sergey E., Zalota, Anna K., Timofeev, Vitaly A. (2020): Review of Macropodia in the Black Sea supported by molecular barcoding data; with the redescription of the type material, observations on ecology and epibiosis of Macropodia czernjawskii (Brandt, 1880) and notes on other Atlanto-Mediterranean species of Macropodia Leach, 1814 (Crustacea, Decapoda, Inachidae). Zoosystematics and Evolution 96 (2): 609-635, DOI: http://dx.doi.org/10.3897/zse.96.48342, URL: http://dx.doi.org/10.3897/zse.96.48342
DOI: 10.15468/b5gdu2
title: Revision of the deep-water spider crab genus, Scyramathia A. Milne-Edwards, 1880, with the description of a new species from the Mediterranean and notes on Rochinia A. Milne-Edwards, 1875, and Anamathia Smith, 1885 (Crustacea, Decapoda, Brachyura, Epialtidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lee, Bee Yan, Richer De Forges, Bertrand, Ng, Peter K. L. (2020): Revision of the deep-water spider crab genus, Scyramathia A. Milne-Edwards, 1880, with the description of a new species from the Mediterranean and notes on Rochinia A. Milne-Edwards, 1875, and Anamathia Smith, 1885 (Crustacea, Decapoda, Brachyura, Epialtidae). Zoosystematics and Evolution 96 (2): 537-569, DOI: http://dx.doi.org/10.3897/zse.96.48041, URL: http://dx.doi.org/10.3897/zse.96.48041
DOI: 10.15468/hhcntx
title: Taxonomic assessment of genetically-delineated species of radicine snails (Mollusca, Gastropoda, Lymnaeidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vinarski, Maxim V., Aksenova, Olga V., Bolotov, Ivan N. (2020): Taxonomic assessment of genetically-delineated species of radicine snails (Mollusca, Gastropoda, Lymnaeidae). Zoosystematics and Evolution 96 (2): 577-608, DOI: http://dx.doi.org/10.3897/zse.96.52860, URL: http://dx.doi.org/10.3897/zse.96.52860
DOI: 10.15468/8s4naq
title: Synonymy of Idiococcobius Hayat with Coccobius Ratzeburg (Hymenoptera, Aphelinidae): evidenced by a new species from Malaysian Borneo

description: This dataset contains the digitized treatments in Plazi based on the original journal article Geng, Hui, Li, Cheng-De, Mottern, Jason, Polaszek, Andrew (2020): Synonymy of Idiococcobius Hayat with Coccobius Ratzeburg (Hymenoptera, Aphelinidae): evidenced by a new species from Malaysian Borneo. Journal of Hymenoptera Research 78: 33-40, DOI: http://dx.doi.org/10.3897/jhr.78.53064, URL: http://dx.doi.org/10.3897/jhr.78.53064
DOI: 10.15468/g9yu23
title: A new species of Periclistus Foerster, 1869 from China and review of the tribe Diastrophini (Hymenoptera, Cynipoidea, Cynipidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pang, Yin, Liu *, Zhiwei, Su, Cheng-Yuan, Zhu, Dao-Hong (2020): A new species of Periclistus Foerster, 1869 from China and review of the tribe Diastrophini (Hymenoptera, Cynipoidea, Cynipidae). ZooKeys 964: 109-126, DOI: http://dx.doi.org/10.3897/zookeys.964.47441, URL: http://dx.doi.org/10.3897/zookeys.964.47441
DOI: 10.15468/8wnx3u
title: Two new species of the leafhopper genus Mitjaevia Dworakowska from China (Hemiptera, Cicadellidae, Typhlocybinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chen, Xiaoxiao, Song, Yuehua (2020): Two new species of the leafhopper genus Mitjaevia Dworakowska from China (Hemiptera, Cicadellidae, Typhlocybinae). ZooKeys 964: 31-40, DOI: http://dx.doi.org/10.3897/zookeys.964.48655, URL: http://dx.doi.org/10.3897/zookeys.964.48655
DOI: 10.15468/xka4un
title: Revision of Nagiella Munroe (Lepidoptera, Crambidae), with the description of a new species from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lu, Xiao-Qiang, Du, Xi-Cui (2020): Revision of Nagiella Munroe (Lepidoptera, Crambidae), with the description of a new species from China. ZooKeys 964: 143-159, DOI: http://dx.doi.org/10.3897/zookeys.964.55703, URL: http://dx.doi.org/10.3897/zookeys.964.55703
DOI: 10.15468/xjahfa
title: Heteroonops (Araneae, Oonopidae) spiders from Hispaniola: the discovery of ten new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Duperre, Nadine, Francisco, Charlotte, Santana-Propper, Ella, Agnarsson, Ingi, Binford, Greta J. (2020): Heteroonops (Araneae, Oonopidae) spiders from Hispaniola: the discovery of ten new species. ZooKeys 964: 1-30, DOI: http://dx.doi.org/10.3897/zookeys.964.51554, URL: http://dx.doi.org/10.3897/zookeys.964.51554
DOI: 10.15468/vw53fg
title: A revision of the Aleiodes bakeri (Brues) species subgroup of the A. seriatus species group with the descriptions of 18 new species from the Neotropical Region

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shaw, Scott R., Shimbori, Eduardo M., Penteado-Dias, Angelica M. (2020): A revision of the Aleiodes bakeri (Brues) species subgroup of the A. seriatus species group with the descriptions of 18 new species from the Neotropical Region. ZooKeys 964: 41-107, DOI: http://dx.doi.org/10.3897/zookeys.964.56131, URL: http://dx.doi.org/10.3897/zookeys.964.56131
DOI: 10.5281/zenodo.4012185
title: Magnetic well and Mercier stability of stellarators near the magnetic axis

description: Data files and plotting scripts for figures in the paper "Magnetic well and Mercier stability of stellarators near the magnetic axis"
DOI: 10.5281/zenodo.3901349
title: Magnetic well and Mercier stability of stellarators near the magnetic axis

description: Data files and plotting scripts for figures in the paper "Magnetic well and Mercier stability of stellarators near the magnetic axis"
DOI: 10.18462/iir.rankine.2020.1209
title: Heat transfer assessment of the low gwp substitutes for R245fa in ORC.
DOI: 10.5523/bris.2pkv9oxgfzvts235zrui7xz00g
title: Dobson_et_al_SpatialDynamicsDroughtEngland

description: This dataset provides an ensemble of daily hydrological model projections for 338 input points for a water resource system model to explore how droughts and water scarcity will change in the future. The ensemble of hydrological model projections covers three time slices (baseline 1974-2004, near future 2020-2050 and far future 2070-2100) derived from a large set of present and future meteorological timeseries for the UK (Guillod et al, 2018). Daily flow timeseries are simulated using the hydrological model DECIPHeR (Coxon et al, 2019).
DOI: 10.6084/m9.figshare.4704748
title: Piotti_JBiog_2017_dataset

description: Data used in the paper:<br><b>Piotti A</b>*, Leonarduzzi C*, Postolache D, Bagnoli F, Spanu I, Brousseau L, Urbinati C, Leonardi S, Vendramin GG (-) Unexpected scenarios from Mediterranean refugial areas: disentangling complex evolutionary dynamics along the Apennine distribution of silver fir. <i>Journal of Biogeography</i>, in press
DOI: 10.6084/m9.figshare.4704724
title: R script and dataset for Bayesian hierarchical logistic modeling of percent male in sea lamprey populations in lentic and river environments

description: R code for conducting analyses described in Johnson, N.S., W.D. Swink, and T.O. Brenden. Field study suggests that sex determination in sea lamprey is directly influenced by larval growth rate. Proceedings of the Royal Society B.<br><br>data.csv is the raw data for fitting the Bayesian hierarchical logistic regression model<br><br>Read me_Metadata... is the metadata describing the variables in the data.csv file<br><br>Rscript.R is the R script for fitting the Bayesian hierarchical logistic regression model<br>
DOI: 10.6084/m9.figshare.4704748.v1
title: Piotti_JBiog_2017_dataset

description: Data used in the paper:<br><b>Piotti A</b>*, Leonarduzzi C*, Postolache D, Bagnoli F, Spanu I, Brousseau L, Urbinati C, Leonardi S, Vendramin GG (-) Unexpected scenarios from Mediterranean refugial areas: disentangling complex evolutionary dynamics along the Apennine distribution of silver fir. <i>Journal of Biogeography</i>, in press
DOI: 10.6084/m9.figshare.4704664
title: Circular Dichroism Spectral Data

description: Code and description relevant to files can be found on https://github.com/dad/pab1-phase-2017/blob/master/src/biophysics/CD.np
DOI: 10.6084/m9.figshare.4704670
title: Small Angle X-ray Scattering data and models

description: Code and description relevant to files can be found on https://github.com/dad/pab1-phase-2017/blob/master/src/biophysics/SAXS.np
DOI: 10.6084/m9.figshare.4704670.v1
title: Small Angle X-ray Scattering data and models

description: Code and description relevant to files can be found on https://github.com/dad/pab1-phase-2017/blob/master/src/biophysics/SAXS.np
DOI: 10.6084/m9.figshare.4704529
title: Zebrafish Developmental Stages RNA-seq count data

description: Count data generated RNA-seq from zebrafish embryos from 18 developmental stages from 1-cell to 5 dpf (White et al. 2017)
DOI: 10.6084/m9.figshare.4704664.v1
title: Circular Dichroism Spectral Data

description: Code and description relevant to files can be found on https://github.com/dad/pab1-phase-2017/blob/master/src/biophysics/CD.np
DOI: 10.6084/m9.figshare.4702822
title: ERP evidence for sensitivity to quantity implicatures

description: This dataset includes the raw data, downsampled and with channel location in EEGlab format (folder: downsampled_cleaned_locations), the epochs with Mastoid reference and high pass 0.3 filter (folder: New Folder With Items), the fieldtrip data (folder: data_fieldtrip) and the dataset that can be imported with R (folder: data_R) and can be accessed through the R functions (see, e.g., child_script.R) for statistical analysis.The two folders include the dataset for adults and children.
DOI: 10.6084/m9.figshare.4704550.v1
title: Sinusoidal voltage protocols for rapid characterization of ion channel kinetics: supplementary code

description: Supplementary code for <strong>Sinusoidal voltage protocols for rapid characterization of ion channel kinetics</strong> by Kylie A. Beattie, Adam P. Hill, Rémi Bardenet, Yi Cui, Jamie I. Vandenberg, David J. Gavaghan, Teun P. de Boer and Gary R. Mirams.
DOI: 10.6084/m9.figshare.4702822.v1
title: ERP evidence for sensitivity to quantity implicatures

description: This dataset includes the raw data, downsampled and with channel location in EEGlab format (folder: downsampled_cleaned_locations), the epochs with Mastoid reference and high pass 0.3 filter (folder: New Folder With Items), the fieldtrip data (folder: data_fieldtrip) and the dataset that can be imported with R (folder: data_R) and can be accessed through the R functions (see, e.g., child_script.R) for statistical analysis.The two folders include the dataset for adults and children.
DOI: 10.6084/m9.figshare.4704550.v2
title: Sinusoidal voltage protocols for rapid characterization of ion channel kinetics: supplementary code

description: Supplementary code for <strong>Sinusoidal voltage protocols for rapid characterization of ion channel kinetics</strong> by Kylie A. Beattie, Adam P. Hill, Rémi Bardenet, Yi Cui, Jamie I. Vandenberg, David J. Gavaghan, Teun P. de Boer and Gary R. Mirams.