cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7254241
title: Deliverable 2.3 Design Load Case Database for Code-to-Code Comparison

description: In work package 2 of FLOATECH a detailed validation and verification of the capabilities of QBlade-Ocean was performed. Thereby, three wind turbine models mounted on floating substructures with differing characteristics serve as the means for the validation.This dataset contains Floating Offshore Wind Turbine (FOWT) calculations in various design situations, computed with three different codes. In more detail, three floating platform archetypes are used in the code-to-code comparison ongoing in work package 2: a semi-submersible-type floater and a spar-type floater as well as the Hexafloat® concept recently proposed by Saipem®. The three test-cases are the NREL 5MW RWT mounted on the DeepCwind semi-submersible platform, the DTU 10MW RWT mounted on the SOFTWIND spar-type platform and the DTU 10MW RWT mounted on the Hexafloat® platform. <br> More details regarding the dataset structure and the testcases can be found in the accompanying document. <em>Changelog:</em> Version 5.0.0 Changed structural damping ratio (increased) in OpenFAST results (SOFTWIND and Hexafloat models) to match structural damping ratios in QBlade Added wave time series at platform undisplaced position Added TurbSim input files for wind field generation. TurbSim v2.0.0 (https://www.nrel.gov/wind/nwtc/turbsim.html - National Renewable Energy Laboratory) Added detailed DLC and simulation information in "DLC&SimulationList.xlsx" Version 4.0.0 Correction of bugs in QB 5MWOC4 and 10MWSOFT models: wind shear exponent in wind fields (0.11 -&gt; 0.14) Update of hydrodynamic database used in OpenFAST and QBlade results of 10MWSOFT model <pre><code>Data in version 5.0.0 is used in WES publication: Papi, F., Troise, G., Behrens de Luna, R., Saverin, J., Perez-Becker, S., Marten, D., Ducasse, M.-L., and Bianchini, A.: A Code-to-Code Comparison for Floating Offshore Wind Turbine Simulation in Realistic Environmental Conditions: Quantifying the Impact of Modeling Fidelity on Different Substructure Concepts, Wind Energ. Sci. Discuss. [preprint], https://doi.org/10.5194/wes-2023-107, in review, 2023.</code></pre>
DOI: 10.5281/zenodo.6923133
title: Data matrix for ALTERNATIVE project deliverable D3.1

description: The evaluation of epidemiological evidence was carried out in project ALTERNATIVE by a systematic review of the literature. The project defined the literature search strategy and build a data matrix from the collected evidence. The matrix consists of all the variables collected from each selected evidence and is presented in separate tables. This file presents the original data matrix.
DOI: 10.5281/zenodo.6923132
title: Data matrix for ALTERNATIVE project deliverable D3.1

description: The evaluation of epidemiological evidence was carried out in project ALTERNATIVE by a systematic review of the literature. The project defined the literature search strategy and build a data matrix from the collected evidence. The matrix consists of all the variables collected from each selected evidence and is presented in separate tables. This file presents the original data matrix.
DOI: 10.5519/qd.l6kov0l8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (56 records)
DOI: 10.6084/m9.figshare.24298508
title: Data S1;Data S2 from Genomic estimates of mutation and substitution rates contradict the evolutionary speed hypothesis of the latitudinal diversity gradient

description: Mutation rate data;Substitution rate data
DOI: 10.25345/c5mg7g61j
title: MassIVE MSV000093087 - GNPS melH substrate (Cholesterol as sole carbon source)
title: GNPS melH substrate (Cholesterol as sole carbon source) RP/Hilic/Hiplex column: positive and negative mode
DOI: 10.6084/m9.figshare.9924395
title: Serum concentration of toxic metals and rare earth elements in children and adolescent

description: Biomonitoring studies are important for quantifying the body burden of pollutants and their possible effects on health. Serum concentration of 42 elements was assessed by ICP-MS in 89 children (7.2 ± 3.4 years old) from Bucharest (Romania). Levels of pollutants were compared with the clinical data obtained from routine blood tests. Clinical parameters were in the physiological range. Deficiencies of manganese, selenium, and zinc were discovered. Blood levels of elements were low. The highest levels were observed among children younger than six years. The sum of iron, selenium, barium, nickel, antimony, and cerium was positively associated with hemoglobin (Spearman rho = 0.217, P-value = 0.041), while the sum of copper, thallium, niobium, and tantalum was negatively associated (Spearman rho = −0.228, P-value = 0.032). Given the inherent sensitivity of the child population, additional studies are needed to assess the effects of these elements on their health.
DOI: 10.6084/m9.figshare.9924395.v1
title: Serum concentration of toxic metals and rare earth elements in children and adolescent

description: Biomonitoring studies are important for quantifying the body burden of pollutants and their possible effects on health. Serum concentration of 42 elements was assessed by ICP-MS in 89 children (7.2 ± 3.4 years old) from Bucharest (Romania). Levels of pollutants were compared with the clinical data obtained from routine blood tests. Clinical parameters were in the physiological range. Deficiencies of manganese, selenium, and zinc were discovered. Blood levels of elements were low. The highest levels were observed among children younger than six years. The sum of iron, selenium, barium, nickel, antimony, and cerium was positively associated with hemoglobin (Spearman rho = 0.217, P-value = 0.041), while the sum of copper, thallium, niobium, and tantalum was negatively associated (Spearman rho = −0.228, P-value = 0.032). Given the inherent sensitivity of the child population, additional studies are needed to assess the effects of these elements on their health.
DOI: 10.6084/m9.figshare.21581181
title: A new species of <i>Megacricetodon</i> from the Early-Middle Miocene of Czech Republic and its importance for the understanding of the earliest evolution and dispersal of the genus in Europe

description: The sudden appearance of modern cricetids in Europe during the Early Miocene was one of the most significant mammalian events of European Neogene. A characteristic representative of this mammalian turnover was the genus <i>Megacricetodon</i> that quickly became major components of the rodent faunas across Europe. Here, we review the fossil record of this genus from the Early-Middle Miocene (MN4-MN5) localities of Czech Republic, the key area for the understanding the earliest history of this genus in central Europe. We provide an age refinement of the localities under study, especially in the context of new data from the Northern Alpine Foreland Basins. A detailed analysis of the available material revealed a presence of <i>Megacricetodon grueneri</i> sp. nov., described here from Dolnice 3 (MN4a/b). The oldest record of <i>Megacricetodon</i> comes from Ořechov (~late MN4a) and marks the first occurrence of the genus in central Europe. We discuss and propose the most likely scenarios for the earliest phylogeny and dispersal of <i>Megacricetodon</i> into central and western Europe that were strongly influenced by major tectonic processes in the Pannonian and Pre-Alpine areas having a major impact on the development of terrestrial ecosystems and the composition of faunas. Zoobank: http://zoobank.org/urn:lsid:zoobank.org:pub:D2154E84-BD58-4AF9-80C7-8E8AEED7517D
DOI: 10.6084/m9.figshare.21432290
title: An overview of <i>Palaeloxodon naumanni</i>, the <i>Palaeoloxodon</i> (Elephantidae) of the far east: distribution, morphology and habitat

description: This paper summarizes previous studies of <i>Palaeoloxodon naumanni</i>, including stratigraphic distribution, chronology, morphological characteristics, taxonomy, habitat, and accompanying fauna. <i>P. naumanni</i> has been reported from over 300 sites on the Japanese Islands, ranging from 44° to 33° N latitude. Many of them have been dated by tephra stratigraphy, sequence stratigraphy, or <sup>14</sup>C dating. Based on the age-dated specimens, <i>P. naumanni</i> is thought to have lived in Japan from 340,000 to 26,000 years ago. Skeletal morphology of <i>P. naumanni</i> is well known. In particular, the skull has been identified as male and female. And the examination of the skulls indicate that <i>Palaeoloxodon</i> is an independent genus within Elephantinae, and also <i>P. naumanni</i> as an independent species within <i>Palaeoloxodon</i>. Based on the vegetation data obtained from <i>P. naumanni</i> localities and the co-existed animal species with <i>P. naumanni</i> indicate that it has inhabited mixed forests with deciduous broad-leaved trees and conifers in the temperate zone. During the latter half of the Late Pleistocene, when the mammoth fauna migrated southwards to Japan, the deciduous broad-leaved forests that were widespread in Honshu were inhabited by the fauna accompanied by <i>P. naumanni</i>. These two faunas repeatedly shifted north and south in response to global climatic changes.
DOI: 10.6084/m9.figshare.21432290.v1
title: An overview of <i>Palaeloxodon naumanni</i>, the <i>Palaeoloxodon</i> (Elephantidae) of the far east: distribution, morphology and habitat

description: This paper summarizes previous studies of <i>Palaeoloxodon naumanni</i>, including stratigraphic distribution, chronology, morphological characteristics, taxonomy, habitat, and accompanying fauna. <i>P. naumanni</i> has been reported from over 300 sites on the Japanese Islands, ranging from 44° to 33° N latitude. Many of them have been dated by tephra stratigraphy, sequence stratigraphy, or <sup>14</sup>C dating. Based on the age-dated specimens, <i>P. naumanni</i> is thought to have lived in Japan from 340,000 to 26,000 years ago. Skeletal morphology of <i>P. naumanni</i> is well known. In particular, the skull has been identified as male and female. And the examination of the skulls indicate that <i>Palaeoloxodon</i> is an independent genus within Elephantinae, and also <i>P. naumanni</i> as an independent species within <i>Palaeoloxodon</i>. Based on the vegetation data obtained from <i>P. naumanni</i> localities and the co-existed animal species with <i>P. naumanni</i> indicate that it has inhabited mixed forests with deciduous broad-leaved trees and conifers in the temperate zone. During the latter half of the Late Pleistocene, when the mammoth fauna migrated southwards to Japan, the deciduous broad-leaved forests that were widespread in Honshu were inhabited by the fauna accompanied by <i>P. naumanni</i>. These two faunas repeatedly shifted north and south in response to global climatic changes.
DOI: 10.5281/zenodo.8435503
title: Areal Extents of the SPA Central Cryptomaria

description: This dataset contains the areal extents of the SPA central cryptomaria analyzed in Wang et al. (2023), as shown in Figure 8. The data is in 'shafile' format and can be opened directly in ArcGIS software. The data is in the stereographic projection centered at the center of SPA (191.1°E, 53.2°S; Garrick-Bethell and Zuber, 2009). MinExt_SPACC=Minimum areal extent of the SPA central cryptomaria; MaxExt_SPACC=Maximum areal extent of the SPA central cryptomaria.
DOI: 10.5281/zenodo.8435502
title: Areal Extents of the SPA Central Cryptomaria

description: This dataset contains the areal extents of the SPA central cryptomaria analyzed in Wang et al. (2023), as shown in Figure 8. The data is in 'shafile' format and can be opened directly in ArcGIS software. The data is in the stereographic projection centered at the center of SPA (191.1°E, 53.2°S; Garrick-Bethell and Zuber, 2009). MinExt_SPACC=Minimum areal extent of the SPA central cryptomaria; MaxExt_SPACC=Maximum areal extent of the SPA central cryptomaria.
DOI: 10.25345/c5gt5fr84
title: MassIVE MSV000093088 - SaLT&PepPr is an Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
title: Cell lysates were adjusted to 5% SDS, and 20 ugs was reduced with 10 mM DTT and alkylated with 25 mM iodoacetamide followed by digestion with 1:15 trypsin using an S-trap at 47 degC for 1 h. Lyophilized peptides were reconstituted at 0.5 ugs/uL, and a study pool QC sample was made by mixing equal volumes of all samples. 1.75 uL of each sample was analyzed once, interspersed with 3 replicates of the SPQC pool, using a Waters M-Class in trap-elute configuration (75 uM x 25 cm HSS-T3 analytical column at 400 nl/min, 5-30% MeCN over 90 min) interfaced to a Thermo Exploris 480 with staggered overlapping window DIA MS analysis. Raw files were deconvoluted with .HTRMS converter (Biognosys) followed by direct-DIA and peptide/protein quantification with Spectronaut 16 (Biognosys).
DOI: 10.25444/nhlbi.23802519.v2
title: Data associated with "Water bend-libration as a cellular Raman imaging probe of hydration"

description: All data has been uploaded as used for analysis in the accompanying manuscript. Frequency calibration has been applied using cyclohexane as a standard. Data has been corrected for a constant offset amongst all spectra. No additional corrections have been applied. Figure 1Raman spectra as plotted in Figure 1A.TIF image of Figure 1B (bright-field).TIF image of Figure 1C (merge). Raman map data used to obtain images in Figures 1D and 1E. Figure 2TIF image of Figure 2A showing the overlay of the bright-field, nucleolus and lipid droplets. Raman map data used to obtain images in Figure 2A (middle, right). Average spectra of nucleoli and lipid droplets as plotted in Figure 2B. Values and error plotted in Figure 2C.<br>
DOI: 10.25444/nhlbi.23802519.v1
title: Data associated with, "Water bend-libration as a cellular Raman imaging probe of hydration"

description: All data has been uploaded as used for analysis in the accompanying manuscript. Frequency calibration has been applied using cyclohexane as a standard. Data has been corrected for a constant offset amongst all spectra. No additional corrections have been applied. Figure 1Raman spectra as plotted in Figure 1A.TIF image of Figure 1B (bright-field).TIF image of Figure 1C (merge). Raman map data used to obtain images in Figures 1D and 1E. Figure 2TIF image of Figure 2A showing the overlay of the bright-field, nucleolus and lipid droplets. Raman map data used to obtain images in Figure 2A (middle, right). Average spectra of nucleoli and lipid droplets as plotted in Figure 2B. Values and error plotted in Figure 2C.<br>
DOI: 10.5281/zenodo.7092642
title: The N-terminal executioner domains of NLR immune receptors are structurally and functionally conserved across major plant lineages: Extended Data

description: Raw data and supporting files for an updated version of the manuscript now entitled "The N-terminal executioner domains of NLR immune receptors are structurally and functionally conserved across major plant lineages". Related to an original version of the bioRxiv preprint: https://www.biorxiv.org/content/10.1101/2022.10.19.512840v1
description: https://www.biorxiv.org/content/10.1101/2022.10.19.512840v1
DOI: 10.5281/zenodo.7092643
title: The N-terminal executioner domains of NLR immune receptors are functionally conserved across major plant lineages: Extended Data

description: Raw data and supporting files for the manuscript entitled "The N-terminal executioner domains of NLR immune receptors are functionally conserved across major plant lineages". bioRxiv preprint: https://www.biorxiv.org/content/10.1101/2022.10.19.512840v1
description: https://www.biorxiv.org/content/10.1101/2022.10.19.512840v1
DOI: 10.5281/zenodo.8356791
title: The N-terminal executioner domains of NLR immune receptors are structurally and functionally conserved across major plant lineages: Extended Data

description: Raw data and supporting files for an updated version of the manuscript now entitled "The N-terminal executioner domains of NLR immune receptors are structurally and functionally conserved across major plant lineages". Related to an original version of the bioRxiv preprint: https://www.biorxiv.org/content/10.1101/2022.10.19.512840v1
description: https://www.biorxiv.org/content/10.1101/2022.10.19.512840v1
DOI: 10.6084/m9.figshare.24298654
title: READ1_sorted_BSF_0838_HTVCLDRXX_1#0023Bac_rub_1_S70637_fastqc.html

description: The raw data of Bacidia rubella fungal symbiont.
DOI: 10.5519/qd.1f9a0w0l
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (39 records)
DOI: 10.5281/zenodo.8325533
title: NO2, O3, PM10 and PM2.5 concentrations - Daily geographical aggregates at ZIP-code level from CAMS European Air Quality Re-analyses.

description: This dataset offers daily aggregated measurements of air pollutants – NO2, O3, PM10, and PM2.5 – across distinct ZIP-code areas in Germany. The temporal coverage spans from January 1, 2013, to December 31, 2022, providing a comprehensive temporal context for analyzing long-term air quality dynamics. Each daily entry comprises key statistical descriptors, encompassing mean, maximum, minimum, and standard deviation values of pollutant concentrations specific to each ZIP-code area. Additionally, for O3, the dataset includes an eight-hour rolling mean daily maximum. Spatial reference is established via shapefiles provided by ESRI Deutschland (https://opendata-esri-de.opendata.arcgis.com/datasets/5b203df4357844c8a6715d7d411a8341_0). These shapefiles link the air quality data to precise ZIP-code areas . The concentration data spanning from 2018 to 2022 originate from the European Air Quality Reanalyses dataset of the Atmosphere Data Store (ADS), an initiative by the Copernicus Atmosphere Monitoring Service (CAMS). Accessible via https://ads.atmosphere.copernicus.eu/cdsapp#!/dataset/cams-europe-air-quality-reanalyses?tab=doc, this dataset offers a robust foundation for assessing air quality. For the years 2013 to 2017, data were previously obtained from a former download platform for the same dataset. Important: in future all data will be migrated to the Atmosphere Data Store (ADS) platform. The native resolution of the CAMS data is 0.1° x 0.1° spatially and hourly temporally. To enhance spatial accuracy, the spatial resolution was virtually increased by a factor of 5 using bilinear interpolation, resulting in a refined grid. The daily mean concentrations were subsequently computed for this augmented grid. Aggregated statistics were derived for each ZIP-code polygon, employing all grid cells intersecting with the polygons. The computation was based on the proportion of cell area included within the respective polygons. This dataset constitutes a valuable resource for conducting ecologically designed epidemiological studies, as it facilitates the exploration of potential associations between air quality and health trends across broad geographical areas. Generated using Copernicus Atmosphere Monitoring Service Information 2013-2022
description: {"references": ["Generated using Copernicus Atmosphere Monitoring Service Information 2013-2022"]}
DOI: 10.5281/zenodo.8325532
title: NO2, O3, PM10 and PM2.5 concentrations - Daily geographical aggregates at ZIP-code level from CAMS European Air Quality Re-analyses.

description: This dataset offers daily aggregated measurements of air pollutants – NO2, O3, PM10, and PM2.5 – across distinct ZIP-code areas in Germany. The temporal coverage spans from January 1, 2013, to December 31, 2022, providing a comprehensive temporal context for analyzing long-term air quality dynamics. Each daily entry comprises key statistical descriptors, encompassing mean, maximum, minimum, and standard deviation values of pollutant concentrations specific to each ZIP-code area. Additionally, for O3, the dataset includes an eight-hour rolling mean daily maximum. Spatial reference is established via shapefiles provided by ESRI Deutschland (https://opendata-esri-de.opendata.arcgis.com/datasets/5b203df4357844c8a6715d7d411a8341_0). These shapefiles link the air quality data to precise ZIP-code areas . The concentration data spanning from 2018 to 2022 originate from the European Air Quality Reanalyses dataset of the Atmosphere Data Store (ADS), an initiative by the Copernicus Atmosphere Monitoring Service (CAMS). Accessible via https://ads.atmosphere.copernicus.eu/cdsapp#!/dataset/cams-europe-air-quality-reanalyses?tab=doc, this dataset offers a robust foundation for assessing air quality. For the years 2013 to 2017, data were previously obtained from a former download platform for the same dataset. Important: in future all data will be migrated to the Atmosphere Data Store (ADS) platform. The native resolution of the CAMS data is 0.1° x 0.1° spatially and hourly temporally. To enhance spatial accuracy, the spatial resolution was virtually increased by a factor of 5 using bilinear interpolation, resulting in a refined grid. The daily mean concentrations were subsequently computed for this augmented grid. Aggregated statistics were derived for each ZIP-code polygon, employing all grid cells intersecting with the polygons. The computation was based on the proportion of cell area included within the respective polygons. This dataset constitutes a valuable resource for conducting ecologically designed epidemiological studies, as it facilitates the exploration of potential associations between air quality and health trends across broad geographical areas. Generated using Copernicus Atmosphere Monitoring Service Information 2013-2022
description: {"references": ["Generated using Copernicus Atmosphere Monitoring Service Information 2013-2022"]}
DOI: 10.5281/zenodo.8435619
title: Multi-photon time-of-flight MLEM application for the positronium imaging in J-PET

description: Data from the simulation for the J-PET detector with four sources, designed to test positronium imaging reconstruction algorithm.<br> Data generated with the J-PET Geant4 and analyzed with the J-PET Framework.<br> Data in form:<br> Deexcitation Hit2 X[cm], Deexcitation Hit2 Y[cm], Deexcitation Hit2 Z[cm], Deexcitation Hit2 time[ps],<br> Annihilation Hit1 X[cm], Annihilation Hit1 Y[cm], Annihilation Hit1 Z[cm], Annihilation Hit1 time[ps],<br> Annihilation Hit2 X[cm], Annihilation Hit2 Y[cm], Annihilation Hit2 Z[cm], Annihilation Hit2 time[ps]
description: We acknowledge the support by the Foundation for Polish Science through TEAM POIR.04.04.00-00-4204/17, the National Science Centre of Poland (through grants No. 2021/41/N/ST2/03950, 2021/42/A/ST2/00423, 2021/43/B/ST2/02150), the Ministry of Education and Science through grant No. SPUB/SP/490528/2021, the Jagiellonian University via project CRP/0641.221.2020, as well as the SciMat and qLife Priority Research Areas budget under the program Excellence Initiative - Research University at the Jagiellonian University
DOI: 10.5281/zenodo.8435618
title: Multi-photon time-of-flight MLEM application for the positronium imaging in J-PET

description: Data from the simulation for the J-PET detector with four sources, designed to test positronium imaging reconstruction algorithm.<br> Data generated with the J-PET Geant4 and analyzed with the J-PET Framework.<br> Data in form:<br> Deexcitation Hit2 X[cm], Deexcitation Hit2 Y[cm], Deexcitation Hit2 Z[cm], Deexcitation Hit2 time[ps],<br> Annihilation Hit1 X[cm], Annihilation Hit1 Y[cm], Annihilation Hit1 Z[cm], Annihilation Hit1 time[ps],<br> Annihilation Hit2 X[cm], Annihilation Hit2 Y[cm], Annihilation Hit2 Z[cm], Annihilation Hit2 time[ps]
description: We acknowledge the support by the Foundation for Polish Science through TEAM POIR.04.04.00-00-4204/17, the National Science Centre of Poland (through grants No. 2021/41/N/ST2/03950, 2021/42/A/ST2/00423, 2021/43/B/ST2/02150), the Ministry of Education and Science through grant No. SPUB/SP/490528/2021, the Jagiellonian University via project CRP/0641.221.2020, as well as the SciMat and qLife Priority Research Areas budget under the program Excellence Initiative - Research University at the Jagiellonian University
DOI: 10.57745/nnqjbn
title: Motif1-clustering-subgenomes.tab

description: Clustering of motif-1 occurrences and subgenomes assignments