cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25422/azu.data.19495178.v1
title: Data and Code for "Rock glacier composition and structure from radio wave speed analysis with dipping reflector correction"

description: This is the supplementary dataset for the manuscript titled <em>Rock glacier composition and structure from radio wave speed analysis with dipping reflector correction</em>, published in the Journal of Glaciology. This dataset contains image files of the ground-penetrating radar sections collected at our study sites, comma-separated interpretation files containing our picks for the radar reflectors, shapefiles of these picks for mapping, MATLAB code used to analyze the radio wave speed and volumetric ice fraction from these measurements, and image files of the figures presented in the main text and supplementary pdf document. The intention for this dataset is to publicly release all of the data and methods that we used so that our results may be reviewed and reproduced, if needed. <em>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</em>
DOI: 10.3535/ctx-n4m-9mh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14743905.v2
title: tACS-NMES

description: Contains preprocessed data for the Global Mean Field Power (GMFP.txt) induced by single pulse NMES, the latency of the first and second evoked response by spNMES (latency.txt) and the relative change in pre-post MEP at 100% RMT TMS after an intervention of paired rhythmic tACS-NMES at one of four phases (tms_prepost.txt)<br>
DOI: 10.6084/m9.figshare.21432603.v1
title: Concrete_Data.xlsx

description: Concrete proportioning and compression resistance strength
DOI: 10.6084/m9.figshare.28297124.v1
title: BIOMARGIN study step 2 & 3: RT-PCR on urine samples

description: This dataset comprises RT-PCR analyses of 1 gene on urine samples from 585 kidney allograft recipients enroled in the BIOMARGIN study (step 2 & 3), with associated metadata showing the Induction Therapy, the Banff Lesion Score for Glomerulitis (g), Peritubular Capillaritis (ptc), Interstitial Inflammation (i), Interstitial Fibrosis (ci) and C4d evaluated on each patient's corresponding kidney allograft biopsy.Data were normalized with housekeeping gene GAPDH using the delta Ct method.
DOI: 10.3535/72n-lzc-a2j
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n5e-b2z-ahb
title: Catenipora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6rb-jqj-30k
title: Specklinia Lindl.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xv4-49t-24z
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ger-ljb-p1j
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rgf-w5s-r1j
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11972307.v2
title: Effectiveness of peer counseling, social engagement, and combination interventions in improving depressive symptoms of community-dwelling Filipino senior citizens

description: The dataset comprised of baseline and follow data of Filipino senior citizens who participated in the Phase 3 of Project ENGAGE
DOI: 10.3535/8xr-d99-phg
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ngy-1w2-fwm
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2b4-q51-dcr
title: Specklinia Lindl.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lvd-1tx-016
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3509453.v2
title: DNA sequence of the gp63 fragment encoding the functional domain of leishmanolysin in natural isolates of Leishmania braziliensis from Corte de Pedra, Northeast Brazil: allele 9.

description: DNA sequence of the gp63 fragment encoding the functional domain of leishmanolysin in natural isolates of Leishmania braziliensis from Corte de Pedra, Northeast Brazil: allele 9. The stretch of gp 63 previously described as encoding the functional domain of the molecule was amplified by PCR, cloned into pcr 2.1 vector and bidirectionally sequenced. Sequences from a panel of 41 parasite isolates were aligned and 45 alleles of the fragment could be identified based on indel and SNPs presented among cloned domains. Haplotypes of polymorphisms (indel and SNPs) that could be detected in at least two clones of the gp63 domain in a single isolate, and in at least two parasite isolates in the collection were considered alleles. Corte de Pedra is a region highly endemic for American tegumentary leishmaniasis (ATL) due to L. braziliensis. Several forms of ATL occur and close to 1,500 new cases are diagnosed in the region each year.
DOI: 10.3535/0n7-rlc-by1
title: Specklinia Lindl.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/npy-v65-kyz
title: †Anazyga Davidson, 1883

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19775449.v2
title: urine_and_fecal_microbiota_in_a_canine_model_of_bladder_cancer_data.xlsx

description: Dataset is from Mrofchak et al., "Urine and Fecal Microbiota in a Canine Model of Bladder Cancer". Information in this dataset includes DogID, cancer status, sample type, collection method, 16S rRNA read concentrations, and DNA concentrations for urine samples, fecal samples, and urine samples by collection methods.
DOI: 10.3535/n2r-dqy-4aj
title: Catenipora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11328188.v1
title: c elegans files

description: C elegans<br>
DOI: 10.6084/m9.figshare.2009232.v5
title: ChromatinAssortativity

description: Code associated to the paper: <br>Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativityVera PancaldiEnrique Carrillo-de-Santa-Pau, Biola Maria Javierre, David Juan, Peter Fraser, Mikhail Spivakov, Alfonso Valencia and Daniel Rico<br><br><br>
DOI: 10.6084/m9.figshare.25757238.v1
title: Propensity score density graph data

description: Minimal, de-identified, aggregated data used to plot propensity score density
DOI: 10.6084/m9.figshare.3566733.v1
title: Appendix B. Key governing equations for simulating net ecosystem productivity in ecosys: plant water relations.

description: Key governing equations for simulating net ecosystem productivity in ecosys: plant water relations.
DOI: 10.6084/m9.figshare.6477320.v2
title: Multiple Sclerosis metabolomics data ver. april 2018

description: This dataset contains metabolomics information of five groups of samples: Control, Multiple Sclerosis, Neurodegeneration groups of dried plasma samples and two groups of dried blood QC samples (L1 and L2). Control and Multiple Sclerosis group are validated for data analysis, Neurodegeneration is still in progress. There are 43 metabolites (13 amino acids and 30 acylcarnitines) and their isotope-labeled internal standards and 5 parameters were measured: Component peak Area, Internal Standard Area, Component peak Height, Internal Standard Height, Signal-to-Noise Ratio. Data were obtained from Multiquant Software ver 2.0 (AB Sciex), Raw data were collected with Analyst ver. 1.6.2 (AB Sciex) and mass-spectrometer API 3200QTRAP in DIMS configuration (without column separation) in MRM mode. Chromsystems MassCheck 55000 test-system and protocol was used for sample preparation. Additional columns (Calculated concentration) was added in Excel (Peak Area parameter was used for calculation)<br>
DOI: 10.60893/figshare.jcp.28021079.v1
title: Supplemental Material

description: Supplemental Material
DOI: 10.17632/j2gg9ph3n6
title: Urban Canyon Outdoor Microclimate Field Measurements in Cairo, Egypt.

description: Monitored meteorological data, namely, air temperature, wind speed, wind direction, solar radiation, relative humidity, and dew point temperature using the Onset HOBO-U30 weather station. Monitored black globe temperature using the Extech HT30 Heat Stress WBGT Meter. Data were monitored at the centre of a street canyon in a university campus. The 50m long and 13m wide urban canyon consists of office buildings, oriented 42◦ North-East (from North). Building heights are asymmetrical - 12m for the Northwestern building, and 17m for the Southeastern building (H/W of 0.9:1:1.3). Measurements were monitored from 07:00 to 19:00 on 6th August 2017.
DOI: 10.3535/jke-qtz-60b
title: Cateniporinae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zpc-wba-k7g
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ljm-xwz-n3r
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ts5-3gq-8f8
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20424126.v1
title: Illumina sequencing reads of the Babel-DNA storage

description: Sequencing reads of Babel-DNA storage.
DOI: 10.17632/2zpff67v59
title: DMT

description: This is a data from the research conducted in three European countries in 2020. It was used to theoretical modeling of the extended TPB with PLS-SEM
DOI: 10.3535/keg-ftk-8m5
title: Anoigmaichnus bretti

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kx6-dan-mtm
title: †Mesotrypa expressa Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16676872.v1
title: Usability, acceptability, and self-reported impact of an innovative hepatitis C risk reduction intervention for men have sex with men

description: To evaluate the acceptability, usability and self-reported impact of an hepatitis C prevention intervention we sent an online questionnaire to users of the intervention. The intervention is the NoMoreC toolbox, a box with products to assist in HCV risk reduction behaviours. The responses to the questionnaire are found in the data set.
DOI: 10.6084/m9.figshare.3454628.v1
title: The Shanderman eclogites: a Late Carboniferous high-pressure event in the NW Talesh Mountains (NW Iran)

description: The Shanderman Metamorphic Complex, exposed along the Caspian foothills of the Talesh Mountain, western Alborz, Iran, has always been interpreted as an ophiolitic fragment of the Palaeotethys Ocean. According to our new data, this unit consists of metamorphic rocks mainly represented by garnet–staurolite micaschists with large bodies of metabasites containing well-preserved eclogitic-phase assemblages. The Shanderman Complex (SC) was later intruded at middle crustal levels by intermediate–basic intrusive bodies. New Ar/Ar ages of paragonitic white micas in equilibrium with the high-pressure assemblages have given a Late Carboniferous age (315±9 Ma). Our new data suggest that the SC was equilibrated in high-pressure conditions during an orogenic event that predates the Eo-Cimmerian orogeny by more than 100 Ma and that may be tentatively ascribed to the Variscan orogeny <em>sensu latu</em>. We suggest that the Shanderman Complex represents a fragment of the Upper Palaeozoic European continental crust. The occurrence of eclogites in these regions can be explained by two different hypotheses: (1) the SC high-pressure rocks can be related to the accretion of Gondwana-related Transcauscasian–Moesian microplate to the southern margin of Eurasia; or (2) the SC eclogites can represent a fragment of the Late Palaeozoic ‘Variscan belt’ <em>sensu latu</em> of central Europe, which has been translated eastwards during Permian along a dextral megashear zone taking from a Pangea-B to a Pangea-A plate configuration. This metamorphic unit was stacked southwards on the northern edge of the Iran Plate during the Eo-Cimmerian events occurring at the end of the Triassic. The eclogite-bearing basement of the SC was finally exhumed at the end of the Eo-Cimmerian orogeny, as suggested by the composition of the basal layers of the Shemshak Group dated here Middle Jurassic, that cover the crystalline rocks of the SC along a regional non-conformity. The SC was probably displaced further southwards during the Mesozoic opening of the South Caspian Basin and the Tertiary thrust stacking and dextral shearing accompanying the formation of the Alborz intracontinental belt.
DOI: 10.3535/353-gcx-cp3
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c1g-be5-gkg
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13594541.v1
title: TPM for oxidative transcriptomes in C. elegans

description: Transcript Per Million (TPM) values for oxidative transcriptomes in Caenorhabditis elegans calculated from public RNA-Seq dataset.
DOI: 10.6084/m9.figshare.20066990.v1
title: Dataset.zip

description: This dataset is the original data of the manuscript "high phylogenetic diversity promotes the function and stability of synthetic denitrification community"
DOI: 10.6084/m9.figshare.3438662.v6
title: A Bayesian model for single cell transcript expression analysis on MERFISH data

description: Multiplexed error-robust fluorescence in-situ hybridization (MERFISH) is a new technology to obtain spatially resolved gene or transcript expression profiles in single cells for hundreds to thousands of genes in parallel. We present a Bayesian model for expression analysis on MERFISH data. We show that the model successfully captures the uncertainty in MERFISH data and eliminates systematic biases that can occur in raw RNA molecule counts obtained with MERFISH. Our model accurately estimates transcript expression, fold-change and coefficient of variation along with credible intervals and control of the expected false discovery rate.This enables MERFISH to scale towards the whole genome while being able to control the uncertainty in the obtained results.
DOI: 10.3535/25l-jfx-46p
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/thj-vdn-3xw
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1591206.v3
title: Measuring insect abundance depending on the effect of light and habitat at York University

description: The purpose behind this experiment was to determine the effects of habitat and amount of light on insect abundance. This experiment was performed at York University, at two different locations: Stong pond grassland and Danby woodlots on October 19th, 2015 and October 26th, 2015. The experiment time was approximately constant for the two days, around 3:00 pm. For the first day of experiments on October 19th, 2015 temperature was around 13 degrees Celsius, with wind speed at 9 mph and clear skies. On October 26th, 2015 temperature was 10 degrees Celsius, with a wind speed of 6 mph, skies on that day were more cloudy compared to October 19th, 2015. Data were collected in Danby Woodlot by Sarah Alsammarraie and Syed Yosuf, while Stong pond collection was done by Anosha Rahmany and Sharon Dhami. Data were collected using ten pan traps in the grassland area and ten pan traps in the woodlot area. Transect tape was used to measure 27 meters distance in a straight line into the woodlot allowing 3 meters between each pan trap. Ten pan traps of different colors were placed in an alternating order were no two consecutive color were the same. Pan traps were filled with soap-water solution; about half of the pan was filled with the solution to trap the insects in and the pans were set for an hour in the two habitats. When an hour had been passed, the insect abundance, canopy coverage and RTUs were measured at each location where there was a pan trap positioned. Canopy coverage was estimated by creating a square in the air above the pan trap using two fingers from each hand and raising the square along head height and looking through it to estimate the percentage of sky visible through that square. The exact same procedure was followed in day 1 and day 2.
DOI: 10.6084/m9.figshare.22572618.v2
title: Adaptive Functional Thresholding for Sparse Covariance Function Estimation in High Dimensions

description: Covariance function estimation is a fundamental task in multivariate functional data analysis and arises in many applications. In this paper, we consider estimating sparse covariance functions for high-dimensional functional data, where the number of random functions <i>p</i> is comparable to, or even larger than the sample size <i>n</i>. Aided by the Hilbert–Schmidt norm of functions, we introduce a new class of functional thresholding operators that combine functional versions of thresholding and shrinkage, and propose the adaptive functional thresholding estimator by incorporating the variance effects of individual entries of the sample covariance function into functional thresholding. To handle the practical scenario where curves are partially observed with errors, we also develop a nonparametric smoothing approach to obtain the smoothed adaptive functional thresholding estimator and its binned implementation to accelerate the computation. We investigate the theoretical properties of our proposals when <i>p</i> grows exponentially with <i>n</i> under both fully and partially observed functional scenarios. Finally, we demonstrate that the proposed adaptive functional thresholding estimators significantly outperform the competitors through extensive simulations and the functional connectivity analysis of two neuroimaging datasets.
DOI: 10.17632/dmk886xwxw
title: Pathway choice in the alternative telomere lengthening in neoplasia is dictated by replication fork processing mediated by the nuclease activity of EXD2

description: Raw data for the manuscript entitled “Pathway choice in the alternative telomere lengthening in neoplasia is dictated by replication fork processing mediated by the nuclease activity of EXD2”.
DOI: 10.3535/he6-s39-06n
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kw4-g5k-rb9
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26614228.v1
title: <b>Cooperatives as a means of enhancing sustainable affordable housing provision in Nigeria: A case study of Federal Polytechnic Nekede, Owerri, Nigeria.</b>

description: This dataset were used to conduct a research titled "<b>Cooperatives as a means of enhancing sustainable affordable housing provision in Nigeria: A case study of Federal Polytechnic Nekede, Owerri, Nigeria"</b>
DOI: 10.3535/va8-vtd-m2n
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14759501.v1
title: Additional file 1 of Overexpression of DDIT4 and TPTEP1 are associated with metastasis and advanced stages in colorectal cancer patients: a study utilizing bioinformatics prediction and experimental validation

description: Additional file 1: Table S1. Information obtained in the process of identification and selection of key genes including up-regulated genes with combined gene score &gt; 3 of previous analysis (PMID: 31654507), up-regulated genes in carcinogenesis & colorectal cancer of DisGeNET with pvalue &lt; 0.0001, the largest cluster of k-means clustering in STRING (confidence ≥ 0.4), and key genes.
DOI: 10.3535/ea3-5bj-yqb
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lq4-4qk-m5d
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sek-vla-bj9
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10010138.v1
title: Integral projection models from natural populations

description: This folder contains the data file and R scripts necessary to model population growth rates (lambda) of a natural population, based on data from five transects from 2010-2012. Please contact Jill Anderson (jta24@uga.edu) with questions.<br>
DOI: 10.6084/m9.figshare.4195602.v1
title: Supplementary Material for: Feasibility and Efficacy of a Urologic Profession Campaign on Cryptorchidism Using Internet and Social Media

description: <b><i>Introduction:</i></b> We performed a professional campaign in Germany intending to establish the urologic profession as a competent and helpful point of contact for patients with cryptorchidism. The aim of this study was to assess the feasibility of this campaign and to quantify the efficacy of using Internet vs. social media. <b><i>Materials and Methods:</i></b> The strategic design of the campaign comprised a strategy meeting, creation of a landing page, and targeted advertisements on Google in the form of Adwords and on Facebook in the form of sidebar ads and sponsored posts. Outcome measurements were number of impressions, homepage sessions, and downloads of an information brochure. <b><i>Results:</i></b> The campaign generated 2,511,923 impressions, 7,369 homepage sessions and 1,086 downloads of information brochures using a total investment budget of 7,500€. Use of Google Adwords was more efficient on outcome measurements than Facebook. A subanalysis of Facebook advertisements showed that sidebar ads and sponsored posts were equally efficient. <b><i>Conclusions:</i></b> New media are an effective platform for a profession campaign. Google Adwords is a more effective and cost-efficient platform than Facebook for a targeted campaign.
DOI: 10.3535/11q-r27-b31
title: Craniidae Menke, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6gj-vz9-4e4
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28162946.v1
title: Factors Influencing Dog Vaccination Against Rabies Among Household Heads in South Mugirango Sub-County, Kisii County: A Quantitative Descriptive Cross-Sectional Survey

description: A quantitative descriptive cross-sectional survey conducted in South Mugirango , Kisii, Kenya involving structured questionnaires administered to 422 household heads.
DOI: 10.3535/5nt-ahq-26n
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5qf-bv1-6ft
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a2v-5lg-rb0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21670859.v1
title: Table-S5-Eukarya-GO-enrichment-analysis-results.tsv

description: our table S5 from the corresponding publication, it was too large to store with the manuscript