cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.24227
title: Arctic algae genomes libraries

description: This library provides taxonomic, biogeographic, protein targeting and evolutionary origin information inferred for four species of photosynthetic nano-flagellate isolated from the Arctic: the cryptomonad CCMP2293; the haptophyte CCMP2436; the chrysophyte CCMP2298; and the pelagophyte CCMP2097, isolated from Baffin Island in summer 1998. Comparative information is also provided for other cryptomonad, haptophyte, PESC clade and pelagophyte species, using information from published genomes and MMETSP transcriptome datasets.
DOI: 10.6084/m9.figshare.c.3621044_d14.v1
title: Additional file 4: Table S3. of Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway

description: NanoString analysis of wild type N2 and nipi-3(fr4) gene expression. This table lists the gene expression fold changes between wild type N2 and nipi-3(fr4) animals fed P. aeruginosa PA14 or control OP50 E. coli for 6Â hours (first tab) or fed E. coli expressing ToxA or BL21 control for 24Â hours (second tab). Expression values are the average of three (PA14 and OP50) or two (ToxA and BL21 control) independent replicates and normalized to three control genes. Primary data are provided in Additional file 15. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3621083_d2.v1
title: Additional file 2: Table S1. of Identification and functional analyses of sex determination genes in the sexually dimorphic stag beetle Cyclommatus metallifer

description: List of primer sequences for RT-PCR. (XLS 18Â kb)
DOI: 10.6084/m9.figshare.c.3621083_d3.v1
title: Additional file 3: Table S2. of Identification and functional analyses of sex determination genes in the sexually dimorphic stag beetle Cyclommatus metallifer

description: List of primer sequences for dsRNA synthesis. (XLS 18Â kb)
DOI: 10.6084/m9.figshare.c.3621095_d1.v1
title: Additional file 1: of The trade-off of availability and growth inhibition through copper for the production of copper-dependent enzymes by Pichia pastoris

description: Intracellular copper content and copper adsorption. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3621101_d1.v1
title: Additional file 4: Table S4. of The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence

description: Shows the 100 genes in the Muguga reference genome sequence with the lowest average read mapping coverage from Kiambu5 whole genome shotgun sequencing reads. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3621104_d1.v1
title: Additional file 2: of Osteopontin and thrombospondin-1 play opposite roles in promoting tumor aggressiveness of primary resected non-small cell lung cancer

description: Dataset supporting the conclusions of this article. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3621116_d1.v1
title: Additional file 2: Table S2. of CXC chemokine superfamily induced by Interferon-Îł in asthma: a cross-sectional observational study

description: Sputum Cell characteristics, and CXC3 ligands and IL-8 in subjects classified by clinical severity. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3621095_d2.v1
title: Additional file 7: of The trade-off of availability and growth inhibition through copper for the production of copper-dependent enzymes by Pichia pastoris

description: SDS PAGE analysis of wildtype. (XLS 251 kb)
DOI: 10.6084/m9.figshare.c.3621101_d2.v1
title: Additional file 2: Table S2. of The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence

description: Comprehensive lists of variants identified in T. parva Serengeti-transformed and Kiambu5 stocks, relative to the reference T. parva Muguga isolate, respectively. (XLSX 65Â kb)
DOI: 10.6084/m9.figshare.c.3621116_d2.v1
title: Additional file 1: Table S1. of CXC chemokine superfamily induced by Interferon-Îł in asthma: a cross-sectional observational study

description: Characteristics of subjects classified by clinical severity according to International ERS/ATS guidelines. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3621101_d3.v1
title: Additional file 3: Table S3. of The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence

description: Comprehensive lists of variants identified in T. parva Serengeti-transformed and Kiambu5 stocks, relative to the reference T. parva Muguga isolate, respectively. (XLSX 71Â kb)
DOI: 10.6084/m9.figshare.c.3621167_d8.v1
title: Additional file 1: of Gene expression profiling of trout regenerating muscle reveals common transcriptional signatures with hyperplastic growth zones of the post-embryonic myotome

description: Heat map file for Java treeview visualisation of unsupervised clustering of differentially expressed genes during regeneration. (CDT 3818 kb)
DOI: 10.6084/m9.figshare.c.3621167_d9.v1
title: Additional file 3: of Gene expression profiling of trout regenerating muscle reveals common transcriptional signatures with hyperplastic growth zones of the post-embryonic myotome

description: Major functional categories of cluster II and lists of genes that formed them. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3621200_d1.v1
title: Additional file 3: of Ino80 is essential for proximal-distal axis asymmetry in part by regulating Bmp4 expression

description: Genotyping results from intercross of heterozygous Ino80 KO mice. Litters of mice or embryos at specified stages were collected and genotyped using the PCR-based genotyping strategy. Significant deviations from the expected genotype ratios were identified using a Chi-Square test (**pâ
DOI: 10.6084/m9.figshare.c.3621200_d2.v1
title: Additional file 8: of Ino80 is essential for proximal-distal axis asymmetry in part by regulating Bmp4 expression

description: Supporting data. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3621203_d1.v1
title: Additional file 1. of Diet-related chronic disease in the northeastern United States: a model-based clustering approach

description: Clustering results for the 129 counties disaggregated by state. Fewer clusters are found, however the overall cluster descriptions, as characterized by the NCHS codes and clustering variables are consistent with the aggregate clusters results presented.
DOI: 10.6084/m9.figshare.c.3621209_d1.v1
title: Additional file 1: Table S1. of Complete genome sequence of an agr-dysfunctional variant of the ST239 lineage of the methicillin-resistant Staphylococcus aureus strain GV69 from Brazil

description: InDels into homopolymeric regions of the GV69 complete genome sequence in comparison with TW20 complete genome. (XLS 48 kb)
DOI: 10.17863/cam.89532
title: Research data supporting "Multi-Depth Phase-Only Hologram Optimization using L-BFGS Algorithm with Sequential Slicing"

description: We implement limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) optimization of phase-only computer-generated hologram (CGH) for multi-depth three-dimensional (3D) target. Instead of computing the full 3D reconstruction of the hologram, we use a novel method using L-BFGS with sequential slicing (SS) for partial evaluation of the hologram during optimization, that only computes loss for a single slice of the reconstruction at every iteration. The dataset is generated to demonstrate that the ability to record curvature information makes L-BFGS a perfect match with the SS technique. The baseline methods for comparison are sum-of-holograms (SoH) and sum-of-loss (SoL). The SoH technique simply takes the sum of holograms individually computed for each slice. The SoL technique computes the full 3D reconstruction of the hologram at each iteration and calculates the sum of loss. Data is generated for SoH and SoL techinques to form the baselines of comparison. All files in the dataset are images in PNG format. The files with "holo" in the filename are the phase holograms, with each pixel value indicating the phase of the hologram mapped to the [0,255] range. The files with "recon" in the filename are therefore the reconstructions of the hologram, at different depths. The plots with "iter" in the filename are the raw plots for all combinations of the optimizaiton algorithms and loss functions involved.
DOI: 10.6084/m9.figshare.c.3621215_d1.v1
title: Additional file 2: of Genome-wide association study of copy number variation with lung function identifies a novel signal of association near BANP for forced vital capacity

description: Copy number class frequencies and lung function association results (FEV1, FVC and FEV1/FVC) for all 1962 CNVRs that were tested. (XLSX 1019 kb)
DOI: 10.6084/m9.figshare.c.3621206_d2.v1
title: Additional file 1: Table S1. of Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE

description: Singular enrichment analysis using AgriGO to identify enriched gene ontologies among the 340 unique up-regulated genes in IS22330 under WW conditions. Table S2. Singular enrichment analysis using AgriGO to identify enriched gene ontologies among the 160 unique down-regulated genes in IS22330 under DS conditions. Table S3. Singular enrichment analysis using AgriGO to identify enriched gene ontologies among the 428 unique up-regulated genes resulted from the comparison of the two genotypes under DS conditions. Table S4. Singular enrichment analysis using AgriGO to identify enriched gene ontologies among the 393 unique down-regulated genes resulted from the comparison of the two genotypes under DS conditions. Table S5. Singular enrichment analysis using AgriGO to identify enriched gene ontologies among the 171 unique DEGs in response to DS conditions in both the genotypes. Table S6. Cross-comparison of enriched GO terms resulted from the unique up-regulated genes of IS20351 and IS22330 in response to DS conditions. Table S7. Cross-comparison of enriched GO terms resulted from the unique down-regulated genes of IS20351 and IS22330 in response to DS conditions. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3621200_d4.v1
title: Additional file 6: of Ino80 is essential for proximal-distal axis asymmetry in part by regulating Bmp4 expression

description: Primers used in this Study. (XLSX 12 kb)
DOI: 10.17863/cam.45325
title: Research data supporting WP 21 Additional codes and people in the British Business Census of Entrepreneurs (BBCE) not available through I-CeM

description: Data files of additional people and corrections to I-CeM
DOI: 10.17863/cam.22572
title: Research data supporting "Dynamic response of a damaged masonry rail viaduct: Measurement and interpretation"

description: Dataset includes fibre-optic data and photogrammetry data collected at Marsh Lane Viaduct in Leeds, UK.
DOI: 10.6084/m9.figshare.c.3621350_d5.v1
title: Additional file 3: of Diversity and evolutionary genetics of the three major Plasmodium vivax merozoite genes participating in reticulocyte invasion in southern Mexico

description: P. vivax msp1 42 polymorphisms in isolates from southern Mexico, 2006–2007. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3621374_d1.v1
title: Additional file 2 of Health figures: an open source JavaScript library for health data visualization

description: Results from laboratory testing. The data contains the task identifier, the average time to completion, number of times the task was successfully completed and the total number of errors. (CSV 209 kb)
DOI: 10.6084/m9.figshare.c.3621371_d2.v1
title: Additional file 3: of Understanding factors affecting patient and public engagement and recruitment to digital health interventions: a systematic review of qualitative studies

description: Details of Studies and Participants. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3621377_d2.v1
title: Additional file 3: of Australian black field crickets show changes in neural gene expression associated with socially-induced morphological, life-history, and behavioral plasticity

description: Supplementary Excel file (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3621350_d6.v1
title: Additional file 1: of Diversity and evolutionary genetics of the three major Plasmodium vivax merozoite genes participating in reticulocyte invasion in southern Mexico

description: P. vivax dbp II polymorphism in isolates from southern Mexico, 2006–2007. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3621374_d2.v1
title: Additional file 4 of Health figures: an open source JavaScript library for health data visualization

description: Computer system usability questionnaire results. The data contains the results of the Computer System Usability Questionnaire answered by 14 participants. (CSV 639 kb)
DOI: 10.17863/cam.1244
title: Research data supporting “Identification and validation of a driver steering control model incorporating human sensory dynamics”

description: This data supports the following paper: Nash, C. J., & Cole, D. J. (2019). Identification and validation of a driver steering control model incorporating human sensory dynamics. Vehicle System Dynamics. The data is hosted by the Cambridge University data repository, and is available at http://dx.doi.org/10.17863/CAM.1244 Data is saved as .m and .mat files, opened using MATLAB. The data was created using MATLAB version 2014b. See README file for more information.
DOI: 10.6084/m9.figshare.c.3621374_d3.v1
title: Additional file 3 of Health figures: an open source JavaScript library for health data visualization

description: Laboratory testing tasks. The data contains the task identifier and the instructions given to the participants to complete the task. (CSV 618 kb)
DOI: 10.17863/cam.22243
title: Research data supporting Dynamic- and Light-Switchable Self-Assembled Plasmonic Metafilms

description: Research data supporting Dynamic- and Light-Switchable Self-Assembled Plasmonic Metafilms
DOI: 10.6084/m9.figshare.c.3621479_d2.v1
title: Additional file 3: of Modelling microbial metabolic rewiring during growth in a complex medium

description: The list of the reactions and genes embedded in all the clusters identified through flux correlation analysis. (ZIP 79 kb)
DOI: 10.6084/m9.figshare.c.3621479_d3.v1
title: Additional file 4: of Modelling microbial metabolic rewiring during growth in a complex medium

description: The whole set of data related to the identified motifs and their annotations (before manual curation), for each probed database. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3621485_d3.v1
title: Additional file 1 of Investigating inter-chromosomal regulatory relationships through a comprehensive meta-analysis of matched copy number and transcriptomics data sets

description: Spreadsheet summarizing the results for all 1430 regulators in the database with significant predicted targets. (XLS 746 kb)
DOI: 10.6084/m9.figshare.c.3621479_d4.v1
title: Additional file 1: of Modelling microbial metabolic rewiring during growth in a complex medium

description: The metabolic reconstruction and the Matlab codes used in this work. (ZIP 3936 kb)
DOI: 10.6084/m9.figshare.c.3621506_d1.v1
title: MOESM6 of Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival

description: Additional file 6: Table S5. Functional Annotation Clustering of genes that are significantly down-regulated in the winter fly heads relative to summer heads as determined by DAVID.
DOI: 10.6084/m9.figshare.c.3621509_d1.v1
title: Additional file 1 of EAGER: efficient ancient genome reconstruction

description: The following additional data are available with the online version of this paper. Additional file 1 contains the full report automatically produced by EAGER. (XLS 9.50 kb)
DOI: 10.6084/m9.figshare.c.3621506_d2.v1
title: MOESM5 of Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival

description: Additional file 5: Table S4. Functional Annotation Clustering of genes that are significantly up-regulated in the winter fly heads relative to summer heads as determined by DAVID.
DOI: 10.6084/m9.figshare.c.3621515_d1.v1
title: Additional file 1: of Crucial genes associated with diabetic nephropathy explored by microarray analysis

description: The list of differentially expressed genes. (XLSX 30 kb)
DOI: 10.5281/zenodo.14509532
title: Warpage Mitigation through Infill Sectioning in Fused Filament Fabrication

description: Dataset and MATLAB scripts for "Warpage Mitigation via Infill Sectioning in Fused Filament Fabrication"
DOI: 10.5281/zenodo.14509533
title: Warpage Mitigation through Infill Sectioning in Fused Filament Fabrication

description: Dataset and MATLAB scripts for "Warpage Mitigation via Infill Sectioning in Fused Filament Fabrication"
DOI: 10.15468/dl.6vyqzp
title: Occurrence Download

description: A dataset containing 1308 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conger myriaster (Brevoort, 1856)"
 ]
}

 The dataset includes 1308 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037822-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621641_d5.v1
title: Additional file 5: of Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium

description: The most significantly enriched Pfam and GO terms. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3621668_d5.v1
title: Additional file 5: of Synthesis and bio-molecular study of (+)-N-Acetyl-Îą-amino acid dehydroabietylamine derivative for the selective therapy of hepatocellular carcinoma

description: Table S2. Microarray data of DAAD2-resistance SNU449 cell line. Class comparison analyses using microarray data of DAAD2-resistant SNU449 cell line provided the lists of genes differentially expressed as a result of DAAD2 treatments. (XLS 446Â kb)
DOI: 10.6084/m9.figshare.c.3621794_d3.v1
title: Additional file 1: Table S1. of Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs

description: List of genes in the hybrids with SNPs between the two parent-specific alleles under normal conditions. (XLSX 233 kb)
DOI: 10.6084/m9.figshare.c.3621842_d1.v1
title: Additional file 2 of SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data

description: Rankings. These three files contain the biological data sets used in this paper, as well as the scores and rankings from all the algorithms presented here. In addition, they include filters so that users can re-order the probes by the score of a particular algorithm.
DOI: 10.6084/m9.figshare.c.3621836_d2.v1
title: Additional file 3: of Use of email, cell phone and text message between patients and primary-care physicians: cross-sectional study in a French-speaking part of Switzerland

description: Database - email and SMS survey. (CSV 84 kb)
DOI: 10.6084/m9.figshare.c.3621842_d2.v1
title: Additional file 3 of SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data

description: Top genes. This zip file contains three pdf files, associated to each one of the 3 biological data sets studied in this paper. Each file shows the full ordered list, sparkLines included, of genes in the top 10 % of rankings according to SW1PerS and that are not present in the top 10 % of the other algorithms.
DOI: 10.6084/m9.figshare.c.3621836_d3.v1
title: Additional file 1: of Use of email, cell phone and text message between patients and primary-care physicians: cross-sectional study in a French-speaking part of Switzerland

description: Questionnaire - email and SMS survey. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3621920_d6.v1
title: Additional file 1: of Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish

description: Comprises of the “Raw” and “TMM Normalized” known mature miRNA expression profiles of all the samples. Sheet1: Raw, Sheet2: TMM Normalized. (XLSX 162 kb)
DOI: 10.6084/m9.figshare.c.3621920_d8.v1
title: Additional file 11: of Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish

description: Comprises of the details of the tissue associated predicted novel pre-miRNAs including the IDs, miRDeep2 scores, read counts, precursor and mature sequences and precursor coordinates. Sheet1: embryo associated novel miRNAs, Sheet2: brain associated novel miRNAs, Sheet3: gut associated novel miRNAs, Sheet4: liver associated novel miRNAs, Sheet5: ovary associated novel miRNAs, Sheet6: testis associated novel miRNAs, Sheet7: eye associated novel miRNAs, Sheet8: heart associated novel miRNAs, Sheet9: summary). For tables containing information about the brain, gut and liver tissue associated novel miRNAs, there exists an additional column indicating whether a tissue associated novel miRNA is present in male/female or both. Some tissue associated novel miRNAs are present in both male and female and some in only one sex. The summary (Sheet9) gives the unique number of tissue associated novel miRNAs that reflects the union of the two. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3621944_d3.v1
title: Additional file 3: of Salivary pellets induce a pro-inflammatory response involving the TLR4â  NF-kB pathway in gingival fibroblasts

description: Proteomics analysis of salivary pellet. Systematic identification and quantification of the proteins in salivary pellets. (XLSX 6044 kb)
DOI: 10.6084/m9.figshare.c.3621947_d1.v1
title: Additional file 2: of Dwarfism with joint laxity in Friesian horses is associated with a splice site mutation in B4GALT7

description: Expression of B4GALT7 in relation to genotype. qPCR data of B4GALT7 mRNA from fibroblasts. (XLSX 13Â kb)
DOI: 10.17863/cam.12537
title: Research data supporting [A Triboelectric Generator Based on Self-poled Nylon-11 Nanowires Fabricated by Gas-flow Assisted Template Wetting]

description: Research data supporting_Nylon NW TENG.zip file contains original SEM images and experimental data in the main text of the manuscript and supporting information. The original SEM images contain original scales and beam conditions at which SEM images were taken. raw-data.xlsx contains data files for the graphs, such as XRD, DSC, energy harvesting measurements and electrical characterization, discussed in the main text of the manuscript and the supporting information.
DOI: 10.6084/m9.figshare.c.3621947_d2.v1
title: Additional file 1: of Dwarfism with joint laxity in Friesian horses is associated with a splice site mutation in B4GALT7

description: Variants with predicted moderate or high effect on gene function in the critical chromosome region of Friesian dwarf horses. Output of snpSift analysis of Next Generation Sequence data. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3621965_d1.v1
title: Additional file 5: of Determining the mode of action of anti-mycobacterial C17 diyne natural products using expression profiling: evidence for fatty acid biosynthesis inhibition

description: Predicted bioactivities for falcarinol and panaxydol from PASS. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.c.3621965_d2.v1
title: Additional file 4: of Determining the mode of action of anti-mycobacterial C17 diyne natural products using expression profiling: evidence for fatty acid biosynthesis inhibition

description: Enriched GO terms for each treatment group. (XLSX 231 kb)
DOI: 10.6084/m9.figshare.c.3621959_d3.v1
title: Additional file 1: of Improving the usefulness of US mortality data: new methods for reclassification of underlying cause of death

description: Mappings of ICD9 and ICD10 codes to condensed set of causes of death, including garbage codes. (XLSX 1139 kb)