cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16948277
title: Metaphorical Interpretations of Korean Bug Names in Popular Science

description: Sources:

Haksaenggwahangmun’gop’yŏnch’anhoe. (2002). Kŏmiŭi Saenghwal. Han’guktoksŏjidohoe.

학생과학문고편찬회. (2002). 『거미의 생활』. 한국독서지도회.

 

Han, Y. (2012). Konch’ung Haksŭp Togam. Chinsŏnch’ulp’ansa.

한영식. (2012). 『곤충 학습 도감』. 진선출판사.

 

Han, Y. (2013). Konch’ung Kŏmsaek Togam. Chinsŏnch’ulp’ansa.

한영식. (2013). 『곤충 검색 도감』. 진선출판사.

 

Kim, Ch. (2012). Kŏmiya nolja: Kŏmibaksa Kim Chup’il sŏnsaengnimgwa ttŏnanŭn shin’gihan kŏmi t’amhŏm. Tosŏch’ulp’an ssinesŭt’ŭ.

김주필. 『거미야 놀자: 거미박사 김주필 선생님과 떠나는 신기한 거미 탐험』. 도서출판 씨네스트.

 

Kim, Ch. et al. (2016a). Semirhwaro Kŭrin Pori Ŏrini Konch’ung Togam. Pori.

김진일 외. (2016a). 『세밀화로 그린 보리 어런이 곤충 도감』. 보리.

 

Kim, Ch. et al. (2016b). Konch’ung Nadŭridogam. Pori.

김진일 외. (2016b). 『곤충 나들이도감』. 도서풀판 보리.

 

Kim, S. (2001). Konch’ungi pagŭlbagŭl ch’ŏtkŏrŭm konch’ung paekkwa. Ungjinjuniŏ.

김순한. (2001). 『곤충이 바글바글 첫걸음 곤충 백과』. 웅진주니어.

 

Kim, S. (2003). Nabi · Nabang. Kyohaksa.

김성수. (2003). 『나비 · 나방』. 교학사.

 

K’omikk’ŏm. (2005a). Konch’ung Segyeesŏ Saranamgi (Vol. 1). Aiseum.

코믹컴. (2005a).『곤충 세계에서 살아남기 1』. 아이세움.

 

K’omikk’ŏm (2005b). Konch’ung Segyeesŏ Saranamgi (Vol. 2). Aiseum.

코믹컴. (2005b). 『곤충 세계에서 살아남기 2』. 아이세움.

 

K’omikk’ŏm (2006). Konch’ung Segyeesŏ Saranamgi (Vol. 3). Aiseum.

코믹컴. (2006). 『곤충 세계에서 살아남기 3』. 아이세움.

 

Kong, S. (2013). Kŏmi saengt’ae togam. Kwanch’aresŏ kirŭgikkaji. Jayeongwa Saengtae.

공상호(2013). 『거미 생태 도감. 관찰에서 기르기까지』. 자연과생태.



Kungnipsumogwŏn. (2009). Uri sanesŏ mannanŭn konch’ung 200kaji. Chiobuk.

국립수목원. (2009). 『우리 산에서 만나는 곤충 200가지』. 지오북.

 

Nam, K. (2001). Han’gugŭi Kŏmi. Kyohaksa.

남궁준. (2001). 『한국의 거미』. 교학사.

 

Nam, S. (2016). Semirhwaro Kŭrin Pori Ŏrini Tongmul Togam. Tosŏch’ulp’an Pori.

남상호 외. (2016). 『세밀화로 그린 보리 어린이 동물 도감』. 도서출판 보리.

 

Paek, M. (2019). Nabi Nadŭridogam. Pori.

백문기. (2019). 『나비 나들이도감』. 도서풀판 보리.

 

Pak, Ch. (2017b). Tingdong~ Kŏmi Togam. Chisŏngsa.

박지환(2017a). 『딩동~ 곤충 도감』. 지성사.

 

Pak, Ch. (2017a). Tingdong~ Konch’ung Togam. Chisŏngsa.

박지환. (2017b). 『딩동~ 거미 도감』. 지성사.

 

Pyŏn, P. (2013). Aha! P’ok’et Konch’ungdogam. Chisiksŏgwan.

변봉규. (2013). 『아하! 포켓 곤충도감』. 지식서관.

 

Son, S. (2009). Chumŏnisok Ttakchŏngbŏlle Togam. Hwangsogŏrŭm.

손상봉. (2009). 『주머니 속 딱정벌레 도감』. 황소걸음.

 

Ye, Ch., & Kim, Y. (2007). Kkoch’ŭi Ch’in’gu Nabi · Nabang. Han’guksyut’ainŏ.

예종화 · 김영이. (2007). 『꽃의 친구 나비 · 나방』. 한국슈타이너.

 

Yi, K. (2009). Why? Konch’ung. Yerimdang.

이광웅. (2009).『Why? 곤충』. 예림당.

 

Yi, S. (2014). Pom · Yŏrŭm · Kaŭl · Kyŏul Sin’gihan Konch’ung Iyagi. Kŭlsongi.

이수영. (2014). 『봄 · 여름 · 가을 · 겨울 신기한 곤충 이야기』. 도서출판 글송이.

 

Yi, S. (2016). Saengsaenghwabo Konch’ung 125kaji. Kŭlsongi.

이수영. (2016). 『생생화보 곤충 125가지』. 글송이.

 

Yi, T. (2020). Han’gugini Kkok Araya Hal Uri Konch’ung 200kaji. Sangsŏgak.

이대암.『한국인이 꼭 알아야 할 우리 곤충 200가지』, 상서각.

 

Yi, Y. (2008). Chumŏni Sok Kŏmi Togam. Hwangsogŏrŭm.

이영보. (2008). 『주머니 속 거미 도감』. 황소걸음.
DOI: 10.22002/4p4t7-rd804
title: COS7 VPS4DN+pNLGFP

description: Cos7 cells transfected with VPS4DN (0.5 ug) and pNLGFP provirus construct (4 ug). Sample #C123
description: <strong>Tilt Series Date:</strong> 2012-03-28</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN construct provided by Wes Sundquist. pNLGFP construct provided by Irvin Chen, UCLA. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-28-31/3dimage_69154/</p>12mar28_pnlDN_C123_1_AT6trial30002_full.rec,  Reconstruction (Pixel Size 2.0 nm), 619.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-28-31/3dimage_69154/12mar28_pnlDN_C123_1_AT6trial30002_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12mar28_pnlDN_C123_1_AT6trial30002.mrc,  Tilt Series (Pixel Size 0.5 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-28-31/rawdata/12mar28_pnlDN_C123_1_AT6trial30002.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jksgb-3cg06
title: Methanotroph

description: Methanotroph_starved
description: <strong>Tilt Series Date:</strong> 2013-06-22</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Methyloprofundus sedimenti</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Victoria Orphan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> starved</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-23/rawdata/</p>methano_starved10011.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-23/rawdata/methano_starved10011.mrc"
        > <i class="download icon"></i> Download </a></p>

        methano_starved10011_full.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-23/3dimage_32244/methano_starved10011_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.d83f8y
title: Occurrence Download

description: A dataset containing 3448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atoconeura kenya, Atoconeura, Atoconeura eudoxia, Atoconeura aethiopica, Atoconeura luxata, Atoconeura biordinata, Allocnemis cyanura, Allocnemis, Trithemis, Elattoneura villiersi, Elattoneura, Thermochoria equivocata, Thermochoria, Thermochoria jeanneli, Ischnura elegans, Ischnura, Selysiothemis nigra, Selysiothemis, Hemistigma affine, Hemistigma, Aciagrion, Sympetrum fonscolombii, Sympetrum, Micromacromia camerunica, Micromacromia, Micromacromia zygoptera, Aethiothemis erythromelas, Aethiothemis, Aciagrion gracile, Aciagrion dondoense, Trithetrum navasi, Trithetrum, Trithetrum congoense, Aciagrion africanum, Trithemis tropicana, Hadrothemis vrijdaghi, Hadrothemis, Hadrothemis scabrifrons, Hadrothemis defecta, Hadrothemis camarensis, Hadrothemis versuta, Hadrothemis infesta, Hadrothemis coacta, Hemicordulia, Diastatomma multilineatum, Diastatomma, Mastigogomphus chapini, Mastigogomphus, Crenigomphus kavangoensis, Crenigomphus, Pseudagrion merina, Pseudagrion, Allocnemis marshalli, Hemicordulia asiatica, Microgomphus, Cordulegaster boltonii algirica, Cordulegaster boltonii, Cordulegaster, Hemicordulia similis, Allocnemis elongata, Orthetrum malgassicum, Orthetrum, Lestinogomphus silkeae, Lestinogomphus, Hemicordulia virens, Microgomphus nyassicus, Paragomphus serrulatus, Paragomphus, Aeshna isoceles, Aeshna, Neurocordulia, Mortonagrion stygium, Mortonagrion, Pyrrhosoma nymphula, Pyrrhosoma, Proplatycnemis pseudalatipes, Proplatycnemis, Neophya rutherfordi, Neophya, Allocnemis superba, Elattoneura vittata, Onychogomphus nigrotibialis, Onychogomphus, Cordulia, Cordulia aenea, Stenocypha molindica, Stenocypha, Platycypha picta, Platycypha, Syncordulia venator, Syncordulia, Syncordulia gracilis, Crocothemis, Metacnemis valida, Metacnemis, Crocothemis sanguinolenta, Crocothemis erythraea, Platycypha rufitibia, Crocothemis saxicolor, Crocothemis striata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((37.1382 2.0599,28.1382 2.0599,28.1382 -6.9401,37.1382 -6.9401,37.1382 2.0599))"
 ]
}

 The dataset includes 3448 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045953-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/8cdrg-ch570
title: Mj007 fil-2

description: MJ007 cells were grown in the presence of fil-2 inhibitor
description: <strong>Tilt Series Date:</strong> 2012-03-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Justin Nodwell</p>
<strong>Purification / Growth Conditions / Treatment:</strong> See Charul et al, 2014</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-03-11-2/rawdata/</p>fil20001.mrc,  Tilt Series (Pixel Size 1.9 nm), 842.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-03-11-2/rawdata/fil20001.mrc"
        > <i class="download icon"></i> Download </a></p>

        fil20001_full.rec,  Reconstruction (Pixel Size 3.8 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-03-11-2/3dimage_17646/fil20001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0g41v-30171
title: Bsubtilis_ponA_sacculi

description: Bsubtilis_sacculi_ponA
description: <strong>Tilt Series Date:</strong> 2012-02-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-31/rawdata/</p>try2MJsacculi0002.mrc,  Tilt Series (Pixel Size 0.95 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-31/rawdata/try2MJsacculi0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        try2MJsacculi0002_full.rec,  Reconstruction (Pixel Size 1.9 nm), 877.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-31/3dimage_26193/try2MJsacculi0002_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fzr42-fxx66
title: Agrobacterium tumefaciens

description: C58 grown on slide
description: <strong>Tilt Series Date:</strong> 2013-10-04</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on a glass slide</p>
<strong>Sample Preparation:</strong> Manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-28/rawdata/</p>c58_slide_2750036.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-28/rawdata/c58_slide_2750036.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_slide_2750036_full.rec,  Reconstruction (Pixel Size 1.56 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-28/3dimage_31971/c58_slide_2750036_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8tgr3-a1z73
title: JT5_Dysgonomonas

description: JT5_Dysgonomonas
description: <strong>Tilt Series Date:</strong> 2013-06-17</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacteroidetes</p>
<strong>Strain:</strong> JT5-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> starved</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-17-13/rawdata/</p>jt50006.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-17-13/rawdata/jt50006.mrc"
        > <i class="download icon"></i> Download </a></p>

        6_full.rec,  Reconstruction (Pixel Size 1.92 nm), 463.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-17-13/3dimage_32236/6_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/f36dj-1bq74
title: Agrobacterium tumefaciens

description: Agrobacterium_VirB8-GFP
description: <strong>Tilt Series Date:</strong> 2013-05-07</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from PatZambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Titan_K2</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-07-67/rawdata/</p>VirB80018.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-07-67/rawdata/VirB80018.mrc"
        > <i class="download icon"></i> Download </a></p>

        VirB80018_part123_4.rec,  Reconstruction (Pixel Size 1.68 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-07-67/3dimage_32461/VirB80018_part123_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/p306n-x3b26
title: HeLa

description: Synchronized, looking for midbodies
description: <strong>Tilt Series Date:</strong> 2014-01-06</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo</p>
<strong>Collaborators and Roles:</strong> With Doug Mckay and Katherine Ullman</p>
<strong>Sample Preparation:</strong> HeLa cells+ siRNA NUP 153+ Thymidine 2mM. 14 hour after release</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-06-51/rawdata/</p>midbody20004.mrc,  Tilt Series (Pixel Size 0.6 nm), 861.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-01-06-51/rawdata/midbody20004.mrc"
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        midbody20004_part121_20.rec,  Reconstruction (Pixel Size 2.4 nm), 156.6 MB  
        
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DOI: 10.22002/fqv62-d1932
title: ori5 CH4

description: Raw data files of ori5 CH4
description: <strong>Tilt Series Date:</strong> 2014-02-13</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Methylomicrobium alcaliphilum</p>
<strong>Strain:</strong> 20Z-ori5</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -12.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Marina Kalyuzhnaya @ Univ. Washington provided the culture</p>
<strong>Purification / Growth Conditions / Treatment:</strong> P-medium, 3% NaCl, supplemented with methane (20% headspace)</p>
  scy2014-02-13-2_slicer3944.jpg: intra-cytoplasmic membrane arrays; surface proteins; granules; localized high contrast particles; arrow: flagellum
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2014-02-13-2/rawdata/</p>atlas10002.mrc,  Tilt Series (Pixel Size 0.48 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2014-02-13-2/rawdata/atlas10002.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10002_full.rec,  Reconstruction (Pixel Size 1.92 nm), 623.6 MB  
        
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DOI: 10.22002/6w5jr-gev38
title: Agrobacterium tumefaciens

description: VG3101 with Ti plasmid
description: <strong>Tilt Series Date:</strong> 2013-11-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Elliot Meyerwitz</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Growth in LB + antibiotics</p>
<strong>Sample Preparation:</strong> Vitrobot blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-11-2/rawdata/</p>vg3101_20002.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-11-2/rawdata/vg3101_20002.mrc"
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        vg3101_20002_part111_1.rec,  Reconstruction (Pixel Size 0.0 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-11-2/3dimage_48947/vg3101_20002_part111_1.rec"
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DOI: 10.22002/y7dn0-yka74
title: HUVECs infx pNLGFPBglI

description: Raw data files of HUVECs infx pNLGFPBglI
description: <strong>Tilt Series Date:</strong> 2013-06-14</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> pNLGFPBglI obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBglI. Sample frozen 24h post infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-06-14-15/rawdata/</p>13jun14_C160_2_HUVECspNLBglI24hPI_AT3BT1_0008.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-06-14-15/rawdata/13jun14_C160_2_HUVECspNLBglI24hPI_AT3BT1_0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        13jun14_C160_2_HUVECspNLBglI24hPI_AT3BT1_0008_full.rec,  Reconstruction (Pixel Size 2.0 nm), 534.5 MB  
        
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