cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25384/sage.6954761.v1
title: EUP-18-1430.R1 replication - Supplemental material for The preference for Europe: Public opinion about European integration since 1952

description: Supplemental material, EUP-18-1430.R1 replication for The preference for Europe: Public opinion about European integration since 1952 by Christopher J Anderson and Jason D Hecht in European Union Politics
DOI: 10.25384/sage.7064336.v1
title: Supplemental_material - Effects of Medical Transport on Outcomes in Children Requiring Intensive Care

description: Supplemental_material for Effects of Medical Transport on Outcomes in Children Requiring Intensive Care by Atsushi Kawaguchi, L. Duncan Saunders, Yutaka Yasui, and Allan DeCaen in Journal of Intensive Care Medicine
DOI: 10.25384/sage.7072304
title: S4_table – Supplemental material for Systematic Identification and Classification of β-Lactamases Based on Sequence Similarity Criteria: β-Lactamase Annotation

description: Supplemental material, S4_table for Systematic Identification and Classification of β-Lactamases Based on Sequence Similarity Criteria: β-Lactamase Annotation by Melise Chaves Silveira, Rangeline Azevedo da Silva, Fábio Faria da Mota, Marcos Catanho, Rodrigo Jardim, Ana Carolina R Guimarães and Antonio B de Miranda in Evolutionary Bioinformatics
DOI: 10.15468/dl.c73vfu
title: Occurrence Download

description: A dataset containing 1833 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chionoecetes tanneri Rathbun, 1893"
 ]
}

 The dataset includes 1833 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105897-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25384/sage.7054355.v1
title: Supplemental Material, YouthBulgeCountryLevel - Youth Bulges and Civil Conflict: Causal Evidence from Sub-Saharan Africa

description: Supplemental Material, YouthBulgeCountryLevel for Youth Bulges and Civil Conflict: Causal Evidence from Sub-Saharan Africa by Matthias Flückiger, and Markus Ludwig in Journal of Conflict Resolution
DOI: 10.25384/sage.7064327.v1
title: Malan_Ciocca_Challet_Pevet_Torpor_The_temperature_dependent-clock_(1) – Supplemental material for Implicating a Temperature-Dependent Clock in the Regulation of Torpor Bout Duration in Classic Hibernation

description: Supplemental material, Malan_Ciocca_Challet_Pevet_Torpor_The_temperature_dependent-clock_(1) for Implicating a Temperature-Dependent Clock in the Regulation of Torpor Bout Duration in Classic Hibernation by André Malan, Dominique Ciocca, Etienne Challet and Paul Pévet in Journal of Biological Rhythms
DOI: 10.25384/sage.7064336
title: Supplemental_material - Effects of Medical Transport on Outcomes in Children Requiring Intensive Care

description: Supplemental_material for Effects of Medical Transport on Outcomes in Children Requiring Intensive Care by Atsushi Kawaguchi, L. Duncan Saunders, Yutaka Yasui, and Allan DeCaen in Journal of Intensive Care Medicine
DOI: 10.25384/sage.7064363
title: Aplication_modeling_results - Supplemental material for Eliminating systematic bias from case-crossover designs

description: Supplemental material, Aplication_modeling_results for Eliminating systematic bias from case-crossover designs by Xiaoming Wang, Sukun Wang and Warren Kindzierski in Statistical Methods in Medical Research
DOI: 10.25384/sage.7029092.v1
title: figure_code – Supplemental material for Visualizing Africa’s Educational Gender Gap

description: Supplemental material, figure_code for Visualizing Africa’s Educational Gender Gap by Sara Lopus and Margaret Frye in Socius
DOI: 10.25384/sage.7072391.v1
title: CPS_Replication_file – Supplemental material for Private Donations and Policy Ambiguity

description: Supplemental material, CPS_Replication_file for Private Donations and Policy Ambiguity by Christine Cahill and Andrey Tomashevskiy in Comparative Political Studies
DOI: 10.25384/sage.6973859.v1
title: Supplemental material for Assessing social and economic impact of subcutaneous mAbs in oncology

description: Supplemental material, Supplementary_Material for Assessing social and economic impact of subcutaneous mAbs in oncology by Americo Cicchetti, Silvia Coretti, Daniele Mascia, Nicola Mazzanti, Pietro Refolo, Francesca R. Rolli and Filippo Rumi in Global & Regional Health Technology Assessment
DOI: 10.25384/sage.7064363.v1
title: Aplication_modeling_results - Supplemental material for Eliminating systematic bias from case-crossover designs

description: Supplemental material, Aplication_modeling_results for Eliminating systematic bias from case-crossover designs by Xiaoming Wang, Sukun Wang and Warren Kindzierski in Statistical Methods in Medical Research
DOI: 10.25384/sage.7064366.v1
title: naps_edmonton - Supplemental material for Eliminating systematic bias from case-crossover designs

description: Supplemental material, naps_edmonton for Eliminating systematic bias from case-crossover designs by Xiaoming Wang, Sukun Wang and Warren Kindzierski in Statistical Methods in Medical Research
DOI: 10.25384/sage.7072328
title: Supplemental_material - Smokers with children with asthma: Parental perceptions about prototype intervention messages focused on reducing child tobacco exposure and use

description: Supplemental_material for Smokers with children with asthma: Parental perceptions about prototype intervention messages focused on reducing child tobacco exposure and use by Ashley H Clawson, Elizabeth L McQuaid, Shira Dunsiger, and Belinda Borrelli in Journal of Child Health Care
DOI: 10.25384/sage.7054340
title: Supplemental Material, JCR-18-0098.R1 - Public Attitudes toward Private Military Companies: Insights from Principal–agent Theory

description: Supplemental Material, JCR-18-0098.R1 for Public Attitudes toward Private Military Companies: Insights from Principal–agent Theory by Mark D. Ramirez, and Reed M. Wood in Journal of Conflict Resolution
DOI: 10.25384/sage.7082816.v1
title: supplementary_materials – Supplemental material for Fuel wall film effects on premixed flame propagation, quenching and emission

description: Supplemental material, supplementary_materials for Fuel wall film effects on premixed flame propagation, quenching and emission by Mingyuan Tao, Haiwen Ge, Brad VanDerWege and Peng Zhao in International Journal of Engine Research
DOI: 10.25384/sage.6967076
title: imre12327_Supplemental_Material - Estimates of Global Bilateral Migration Flows by Gender between 1960 and 2015<sup>1</sup>

description: imre12327_Supplemental_Material for Estimates of Global Bilateral Migration Flows by Gender between 1960 and 2015<sup>1</sup> by Guy J. Abel in International Migration Review
DOI: 10.25384/sage.7058768
title: Supplemental table6 - Supplemental material for Hypoxia-induced alterations in the lung ubiquitin proteasome system during pulmonary hypertension pathogenesis

description: Supplemental material, Supplemental table6 for Hypoxia-induced alterations in the lung ubiquitin proteasome system during pulmonary hypertension pathogenesis by Brandy E. Wade, Jingru Zhao, Jing Ma, C. Michael Hart and Roy L. Sutliff in Pulmonary Circulation
DOI: 10.6084/m9.figshare.14880734
title: Additional file 1 of Genome-wide identification and expression analysis of Raffinose synthetase family in cotton

description: Additional file 1: Table S1. Basic characteristic of RAFS genes in G. hirsutum, G. barbadense, G. arboreum and G. raimondii.
DOI: 10.6084/m9.figshare.22220770.v1
title: Dual-responsive antibiotic and baicalein co-delivery nanoparticles with enhanced synergistic antibacterial activity

description: Globally, due to the rapid development of bacterial resistance, bacterial infections lead to significant mortality and morbidity which require efficient strategies to eradicate these infections. Herein, we prepared a dual-responsive synergistic drug delivery nanoparticle carrier (NPS@Bai/Cip), which responds to sub-acid bacterial microenvironments and targets phosphatase or phospholipase at infection sites. Nanoparticles surfaces were positively (10.0 mV) charged under acidic conditions, leading to good bacterial adhesion and enhanced drug accumulation. NPS@Bai/Cip showed good antibacterial and anti-biofilm activity against drug-resistant <i>Pseudomonas aeruginosa</i>. NPS@Bai/Cip could inhibit the biofilm formation <i>via</i> affecting the swimming, swarming, and twitching motilities of <i>P. aeruginosa</i>. NPS@Bai/Cip was used to treat drug-resistance <i>P. aeruginosa</i>-induced infection in rats by improving wound healing and reducing inflammatory responses. Thus, NPS@Bai/Cip functioned as an antibacterial and antibiofilm agent with good potential for treating bacteria-induced infections.
DOI: 10.6084/m9.figshare.14880677
title: Additional file 2 of Identification of the molecular mechanisms underlying brisket disease in Holstein heifers via microbiota and metabolome analyses

description: Additional file 2: The list of all differential metabolites identified in negative ion mode.
DOI: 10.6084/m9.figshare.14880737
title: Additional file 2 of Genome-wide identification and expression analysis of Raffinose synthetase family in cotton

description: Additional file 2: Table S2. Chromosomal locations of RAFS genes in G. hirsutum, G. barbadense, G. arboreum and G. raimondii.
DOI: 10.6084/m9.figshare.14880737.v1
title: Additional file 2 of Genome-wide identification and expression analysis of Raffinose synthetase family in cotton

description: Additional file 2: Table S2. Chromosomal locations of RAFS genes in G. hirsutum, G. barbadense, G. arboreum and G. raimondii.
DOI: 10.24396/ordar-129
title: Weather station GISFI Homecourt 2015

description: Weather data of 2015 with absence of measurement: 2015-02-02 09:59; 2015-03-02 09:59; 2015-04-01 07:59; 2015-03-02 from 07:59 to 08:59
DOI: 10.6084/m9.figshare.9638003.v1
title: Assembled genome sequences

description: All the assembled sequences including 17 pseudo-chromosomes, and contigs which were clustered but not ordered and oriented, and unclustered.
DOI: 10.6084/m9.figshare.9638003
title: Assembled genome sequences

description: All the assembled sequences including 17 pseudo-chromosomes, and contigs which were clustered but not ordered and oriented, and unclustered.
DOI: 10.6084/m9.figshare.21172177
title: Additional file 2 of Pyroptosis related genes signature predicts prognosis and immune infiltration of tumor microenvironment in hepatocellular carcinoma

description: Additional file 2.
DOI: 10.6084/m9.figshare.21172177.v1
title: Additional file 2 of Pyroptosis related genes signature predicts prognosis and immune infiltration of tumor microenvironment in hepatocellular carcinoma

description: Additional file 2.
DOI: 10.5523/bris.2s2dhb906jzdb2jt1xwltvkppx
title: GNSS Spatial Measurements - ROS Data - September 2023

description: The repository contains part of the open source dataset of computer vision, LIDAR, and position and inertial measurement data, recorded together with global navigation satellite system (GNSS) IQ recordings.
DOI: 10.6084/m9.figshare.13297285
title: Additional file 4 of Identification of the anti-breast cancer targets of triterpenoids in Liquidambaris Fructus and the hints for its traditional applications

description: Additional file 4. Predicted targets of LF triterpenoids and therapeutic targets of breast cancer.
DOI: 10.6084/m9.figshare.23258743
title: Additional file 3 of Genome-wide identification and comparative analysis of DNA methyltransferase and demethylase gene families in two ploidy Cyclocarya paliurus and their potential function in heterodichogamy

description: Additional file 3: Supplementary tables.
DOI: 10.6084/m9.figshare.14880900.v1
title: Additional file 13 of Reconstruction of the full-length transcriptome of cigar tobacco without a reference genome and characterization of anion channel/transporter transcripts

description: Additional file 13: Table S8. Sequences of primers used for SLAC transcripts.
DOI: 10.6084/m9.figshare.14880927.v1
title: Additional file 9 of Reconstruction of the full-length transcriptome of cigar tobacco without a reference genome and characterization of anion channel/transporter transcripts

description: Additional file 9: Table S5. Housekeeping transcripts in cigar tobacco.
DOI: 10.6084/m9.figshare.23258743.v1
title: Additional file 3 of Genome-wide identification and comparative analysis of DNA methyltransferase and demethylase gene families in two ploidy Cyclocarya paliurus and their potential function in heterodichogamy

description: Additional file 3: Supplementary tables.
DOI: 10.6084/m9.figshare.14880903.v1
title: Additional file 1 of Reconstruction of the full-length transcriptome of cigar tobacco without a reference genome and characterization of anion channel/transporter transcripts

description: Additional file 1: Table S1. TPM for corrected transcripts based on NGS datasets.
DOI: 10.6084/m9.figshare.6492458.v1
title: LINC02163 regulates growth and epithelial-to-mesenchymal transition phenotype via miR-593-3p/FOXK1 axis in gastric cancer cells

description: Recently, long non-coding RNAs (lncRNAs) were involved in promoting gastric cancer (GC) initiation and progression. In the current study, we revealed that the expression level of LINC02163 was elevated in GC cell lines and tissues. Knockdown of LINC02163 inhibited GC cells growth and invasion both <i>in vitro</i> and <i>in vivo</i>. Mechanismly, LINC02163 exerted as a ceRNA and negatively regulated miR-593-3p expression. In addition, FOXK1 was identified as a down-stream target of miR-593-3p. The miR-593-3p/FOXK1 axis mediated LINC02163’s effect on GC. To the best of our knowledge, our findings provided the first evidence that LINC02163 functioned as an oncogene in GC. LINC02163 may be a candidate prognostic biomarker and a target for new therapies in GC patients.
DOI: 10.6084/m9.figshare.6492458
title: LINC02163 regulates growth and epithelial-to-mesenchymal transition phenotype via miR-593-3p/FOXK1 axis in gastric cancer cells

description: Recently, long non-coding RNAs (lncRNAs) were involved in promoting gastric cancer (GC) initiation and progression. In the current study, we revealed that the expression level of LINC02163 was elevated in GC cell lines and tissues. Knockdown of LINC02163 inhibited GC cells growth and invasion both <i>in vitro</i> and <i>in vivo</i>. Mechanismly, LINC02163 exerted as a ceRNA and negatively regulated miR-593-3p expression. In addition, FOXK1 was identified as a down-stream target of miR-593-3p. The miR-593-3p/FOXK1 axis mediated LINC02163’s effect on GC. To the best of our knowledge, our findings provided the first evidence that LINC02163 functioned as an oncogene in GC. LINC02163 may be a candidate prognostic biomarker and a target for new therapies in GC patients.
DOI: 10.6084/m9.figshare.13297288.v1
title: Additional file 5 of Identification of the anti-breast cancer targets of triterpenoids in Liquidambaris Fructus and the hints for its traditional applications

description: Additional file 5. Molecular docking results of LF triterpenoids.
DOI: 10.6084/m9.figshare.13297288
title: Additional file 5 of Identification of the anti-breast cancer targets of triterpenoids in Liquidambaris Fructus and the hints for its traditional applications

description: Additional file 5. Molecular docking results of LF triterpenoids.
DOI: 10.6084/m9.figshare.21696948.v1
title: An Asymptotic Analysis of Random Partition Based Minibatch Momentum Methods for Linear Regression Models

description: Momentum methods have been shown to accelerate the convergence of the standard gradient descent algorithm in practice and theory. In particular, the random partition based minibatch gradient descent methods with momentum (MGDM) are widely used to solve large-scale optimization problems with massive datasets. Despite the great popularity of the MGDM methods in practice, their theoretical properties are still underexplored. To this end, we investigate the theoretical properties of MGDM methods based on the linear regression models. We first study the numerical convergence properties of the MGDM algorithm and derive the conditions for faster numerical convergence rate. In addition, we explore the relationship between the statistical properties of the resulting MGDM estimator and the tuning parameters. Based on these theoretical findings, we give the conditions for the resulting estimator to achieve the optimal statistical efficiency. Finally, extensive numerical experiments are conducted to verify our theoretical results. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19588764.v1
title: Additional file 1 of Flap endonuclease 1 and DNA-PKcs synergistically participate in stabilizing replication fork to encounter replication stress in glioma cells

description: Additional file 1. Fig. S1. a, FEN1 expression in normal glioma patients samples. Fig. S2. a, M059K cells were transfected with control (siNC) or FEN1 siRNA (siFEN1) for 48 h and then treated with the indicated doses of HU for 4 h or not. Fig. S3. a, b, GSEA plot of DNA replication, cell cycle, and homologous recombination signatures in glioma samples. Fig. S4. a, b, Fork degradation was evaluated upon HU treatment in M059K cells transfected with siSMARCAL1, siZRANB3, siHLTF or siDNA2 for 48 h. Fig S5. a, b, Whole-cell lysates of cells were analyzed by western blotting using the indicated antibodies. Fig S6. a, Colony formation assay of cells transfected with siDNA-PKcs treated with sc-13.
DOI: 10.6084/m9.figshare.21696948
title: An Asymptotic Analysis of Random Partition Based Minibatch Momentum Methods for Linear Regression Models

description: Momentum methods have been shown to accelerate the convergence of the standard gradient descent algorithm in practice and theory. In particular, the random partition based minibatch gradient descent methods with momentum (MGDM) are widely used to solve large-scale optimization problems with massive datasets. Despite the great popularity of the MGDM methods in practice, their theoretical properties are still underexplored. To this end, we investigate the theoretical properties of MGDM methods based on the linear regression models. We first study the numerical convergence properties of the MGDM algorithm and derive the conditions for faster numerical convergence rate. In addition, we explore the relationship between the statistical properties of the resulting MGDM estimator and the tuning parameters. Based on these theoretical findings, we give the conditions for the resulting estimator to achieve the optimal statistical efficiency. Finally, extensive numerical experiments are conducted to verify our theoretical results. Supplementary materials for this article are available online.
DOI: 10.25378/janelia.9638756.v1
title: Voltron Behavior imaging

description: Datasets from Voltron imaging during sensorimotor behaviors in zebrafish.
DOI: 10.6084/m9.figshare.13308446.v1
title: Efficient estimation of optimal regimes under a no direct effect assumption*

description: We derive new estimators of an optimal joint testing and treatment regime under the no direct effect assumption that a given laboratory, diagnostic, or screening test has no effect on a patient’s clinical outcomes except through the effect of the test results on the choice of treatment. We model the optimal joint strategy with an optimal structural nested mean model (opt-SNMM). The proposed estimators are more efficient than previous estimators of the parameters of an opt-SNMM because they efficiently leverage the ‘no direct effect of testing’ assumption. Our methods will be of importance to decision scientists who either perform cost-benefit analyses or are tasked with the estimation of the ‘value of information’ supplied by an expensive diagnostic test (such as an MRI to screen for lung cancer).
DOI: 10.6084/m9.figshare.13308449.v1
title: High-dimensional vector autoregressive time series modeling via tensor decomposition

description: The classical vector autoregressive model is a fundamental tool for multivariate time series analysis. However, it involves too many parameters when the number of time series and lag order are even moderately large. This paper proposes to rearrange the transition matrices of the model into a tensor form such that the parameter space can be restricted along three directions simultaneously via tensor decomposition. In contrast, the reduced-rank regression method can restrict the parameter space in only one direction. Besides achieving substantial dimension reduction, the proposed model is interpretable from the factor modeling perspective. Moreover, to handle high-dimensional time series, this paper considers imposing sparsity on factor matrices to improve the model interpretability and estimation efficiency, which leads to a sparsity-inducing estimator. For the low-dimensional case, we derive asymptotic properties of the proposed least squares estimator and introduce an alternating least squares algorithm. For the high-dimensional case, we establish non-asymptotic properties of the sparsity-inducing estimator and propose an ADMM algorithm for regularized estimation. Simulation experiments and a real data example demonstrate the advantages of the proposed approach over various existing methods.
DOI: 10.6084/m9.figshare.23258805
title: Additional file 2 of Analysis of the utilization value of different tissues of Taxus×Media based on metabolomics and antioxidant activity

description: Supplementary Material 2
DOI: 10.25378/janelia.9638756
title: Voltron Behavior imaging

description: Datasets from Voltron imaging during sensorimotor behaviors in zebrafish.
DOI: 10.6084/m9.figshare.7017248
title: Leukocyte telomere length and epigenetic-based mortality risk score: associations with all-cause mortality among older adults

description: Telomere length (TL) has been established as a biomarker of aging and aging-related health outcomes, but showed only a weak or inconsistent association with all-cause mortality in previous epidemiological studies. Recently, an epigenetic ‘mortality risk score’ (MS) based on whole blood DNA methylation at 10 mortality-related CpG sites has been demonstrated to be strongly related to all-cause mortality at the population level. This study aimed to address the association between TL and this MS, and to assess and compare their associations with all-cause mortality. The MS was derived from the DNA methylation profiles measured by Illumina Human Methylation450K Beadchip and TL was measured by quantitative PCR at baseline among 1517 participants aged 50–75 of the German ESTHER cohort study. In cross-sectional bi- and multivariable analyses, the MS was strongly associated and showed monotonic dose-response relationships with TL (<i>p</i>-values &lt;0.05). However, only the MS but not TL was associated with all-cause mortality during a median follow-up of 12.5 years. After controlling for potential covariates and TL, hazard ratios (95% CI) for all-cause mortality for low, moderate and high levels of the MS defined by 1, 2–5 and &gt;5 CpG sites with aberrant methylation were 2.24 (1.13–4.41), 3.31 (1.76–6.22) and 6.33 (3.22–12.41) compared to a MS of 0, respectively. Our investigation shows that the epigenetic-based MS is strongly associated with TL, a broadly accepted aging biomarker, and at the same time shows much stronger associations with all-cause mortality than the latter.