cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.vg06c
title: Data from: Fine-scale analysis of an assassin bug's behaviour: predatory strategies to bypass the sensory systems of prey

description: Some predators sidestep environments that render them conspicuous to the
 sensory systems of prey. However, these challenging environments are
 unavoidable for certain predators. Stenolemus giraffa is an assassin bug
 that feeds on web-building spiders; the web is the environment in which
 this predator finds its prey, but it also forms part of its preys'
 sophisticated sensory apparatus, blurring the distinction between
 environment and sensory systems. Stenolemus giraffa needs to break threads
 in the web that obstruct its path to the spiders, and such vibrations can
 alert the spiders. Using laser vibrometry, this study demonstrates how S.
 giraffa avoids alerting the spiders during its approach. When breaking
 threads, S. giraffa attenuates the vibrations produced by holding on to
 the loose ends of the broken thread and causing them to sag prior to
 release. In addition, S. giraffa releases the loose ends of a broken
 thread one at a time (after several seconds or minutes) and in this way
 spaces out the production of vibrations in time. Furthermore, S. giraffa
 was found to maximally reduce the amplitude of vibrations when breaking
 threads that are prone to produce louder vibrations. Finally, S. giraffa
 preferred to break threads in the presence of wind, suggesting that this
 araneophagic insect exploits environmental noise that temporarily impairs
 the spiders' ability to detect vibrations. The predatory behaviour of
 S. giraffa seems to be adaptated in intricate manner for bypassing the
 sophisticated sensory systems of web-building spiders. These findings
 illustrate how the physical characteristics of the environment, along with
 the sensory systems of prey can shape the predatory strategies of animals.
description: Peak amplitude of
 vibrations and times for measured components of thread breaking
 behaviourThe folder contains
 several excel files. Please refer to the titles of each excel file for a
 description of the specific data contained in the file. Data are either of
 peak amplitudes (in kU) produced when breaking or releasing threads, or of
 time (in seconds) elapsed between different components of thread breaking
 behaviour.dryad.zip
DOI: 10.5061/dryad.c59q3
title: Data from: Evolutionary rescue in populations of Pseudomonas fluorescens across an antibiotic gradient

description: Environmental change represents a major threat to species persistence.
 When change is rapid, a population's only means of persisting may be
 to evolve resistance. Understanding such ‘evolutionary rescues’ is
 important for conservation in the face of global change, but also in the
 agricultural and medical sciences, where the objective is rather
 population control or eradication. Theory predicts that evolutionary
 rescue is fostered by large populations and genetic variation, but this
 has yet to be tested. We replicated hundreds of populations of the
 bacterium Pseudomonas fluorescens SBW25 submitted to a range of doses of
 the antibiotic streptomycin. Consistent with theory, population size, and
 initial genetic diversity influenced population persistence and the
 evolution of antibiotic resistance. Although all treated populations
 suffered initial declines, those experiencing the smallest decreases were
 most likely to be evolutionarily rescued. Our results contribute to our
 understanding of how evolution may or may not save populations and species
 from extinction.
description: Rams_exp1_1experiment 1: data set for survival analysis. column 1: population type {clonal, diversified}; column 2: antibiotic dose; column 3: population survival {alive, dead}Rams_exp1_2Data set for time series analysis of population size in experiment 1, during the first 22h. column 1: population type {clonal, diversified}; column 2: antibiotic dose; column 3: population replicate; column 4: time {hours}; column 5: log10(population size+1); column 6: future population rescue {alive, dead}Rams_exp1_3data for final population size (t=53h) in experiment 1 (rescued populations). Column 1: population type {clonal, diversified}; column 2: antibiotic dose; column 3: log10(population size+1).Rams_exp2_1data set for analysis of population rescue at end of experiment 2 (t=86hours). Column 1: population type {0.2ml, 1.5ml volume}; column 2: population rescue {alive, dead}; column 3: antibiotic dose.Rams_exp2_2data set for time series analysis of population size during experiment 2. Column 1: population type {0.2ml, 1.5ml volume}; column 2: population rescue {alive, dead after 86h}; column 3: antibiotic dose; column 4: population identity; column 5: time {hours}; column 6: log10(population size+1)RAms_exp2_3data set for analysis of correlation between change in log population size (t48 minus t24) and frequency of antibiotic-resistant type in the population. Column 1: antibiotic dose; column 2: change in population size; column 3: frequency of resistant type.Rams_exp2_4data file for analysis of final (t=86h) population size in rescued (1.5ml volume) populations and frequency of antibiotic resistant types in these populations. Column 1: antibiotic dose; column 2: frequency of resistant type; column 3: log10(population size+1).
DOI: 10.5061/dryad.8909j
title: Data from: Genotype-by-genotype specificity remains robust to average temperature variation in an aphid/endosymbiont/parasitoid system

description: Genotype-by-genotype interactions demonstrate the existence of variation
 upon which selection acts in host-parasite systems at respective
 resistance and infection loci. These interactions can potentially be
 modified by environmental factors, which would entail that different
 genotypes are selected under different environmental conditions. In the
 current study, we checked for a G x G x E interaction in the context of
 average temperature and the genotypes of asexual lines of the
 endoparasitoid wasp Lysiphlebus fabarum and isolates of Hamiltonella
 defensa, a protective secondary endosymbiont of the wasp's host, the
 black bean aphid Aphis fabae. We exposed genetically identical aphids
 harbouring different isolates of H. defensa to three asexual lines of the
 parasitoid and measured parasitism success under three different
 temperatures (15°C, 22°C and 29°C). While there was clear evidence for
 increased susceptibility to parasitoids at the highest average temperature
 and a strong G x G interaction between the host's symbionts and the
 parasitoids, no modifying effect of temperature, that is no significant G
 x G x E interaction, was detected. This robustness of the observed
 specificity suggests that the relative fitness of different parasitoid
 genotypes on hosts protected by particular symbionts remains uncomplicated
 by spatial or temporal variation in temperature, which should facilitate
 biological control strategies.
description: Average temperature
 experiment - Cayetano & Vorburger 2013'temp' lists
 the average temperatures in degrees Celsius that the replicates in the
 study were exposed to. 'day' means the day on which the
 replicates were exposed to processed. The experiment had a block design,
 with four blocks exposed to the heat treatments on the first day, and
 three blocks on the second. 'a_line' lists the aphid sublines,
 desigated as either '407' (an uninfected line), or some other
 number that designates an endosymbiont isolate with which the aphids in
 that subline are infected (eg. '402' means that the subline is
 infected in with endodymbiont 402). 'n_exposed' means the number
 of juvenile aphids exposed to the wasps (this variable is called
 'colony size' in the manuscript). 'ang_p_mumm' is the
 arcsine square root tranformed proportion of aphids mummified. RES_1 are
 the residuals resulting from a full factorial general linear model with
 n_exposed as the covariate, ang_p_mumm' as the response variable and
 'temp', 'a_line' and 'p_line' (parasitoid
 lines) as the fixed factors.
DOI: 10.5061/dryad.6g0j3
title: Data from: Habitat- and season-specific temperatures affect phenotypic development of hatchling lizards

description: Embryonic environments influence phenotypic development, but relatively
 few experiments have explored the effects of natural environmental
 variation. We incubated eggs of the lizard Anolis sagrei under conditions
 that mimicked natural spatial and temporal thermal variation to determine
 their effects on offspring morphology and performance. Incubation
 temperatures mimicked two microhabitats (open, shade) at two different
 times of the incubation season (April, July). Egg survival, incubation
 duration and offspring size were influenced by interactions between
 habitat- and season-specific nest temperatures, and locomotor performance
 was influenced primarily by temporal factors. These findings highlight the
 importance of spatial and temporal environmental variation in generating
 variation in fitness-related phenotypes.
description: Data Set for Habitat-
 and season-specific temperatures affect phenotypic development of
 hatchling lizardsThis data set contains
 all incubation data and hatchling morphometric and performance data used
 in the analyses for the paper "Habitat- and season-specific
 temperatures affect phenotypic development of hatchling
 lizards"Pearson Warner dataset (Biol
 Lett- final).xlsx
DOI: 10.5061/dryad.s76h0s6
title: Data from: Hox genes mediate the escalation of sexually antagonistic traits in water striders

description: Sexual conflict occurs when traits favoured in one sex impose fitness
 costs on the other sex. In the case of sexual conflict over mating rate,
 the sexes often undergo antagonistic coevolution and escalation of traits
 that enhance female’s resistance to superfluous mating and traits that
 increase male’s persistence. How this escalation in sexually antagonistic
 traits is established during ontogeny remains unclear. In the water
 strider Rhagovelia antilleana, male persistence traits consist of sex
 combs in the forelegs and multiple rows of spines and a thick femur in the
 rearlegs. Female resistance trait consists of a prominent spike-like
 projection of the pronotum. RNAi knockdown against the Hox gene Sex Combs
 Reduced resulted in the reduction of both the sex comb in males and the
 pronotum projection in females. RNAi against the Hox gene Ultrabithorax
 resulted in the complete loss or reduction of all persistence traits in
 male rearlegs. These results demonstrate that Hox genes can be involved in
 intra- and inter-locus sexual conflict and mediate escalation of sexually
 antagonistic traits.
description: DataThis file contains the
 data used for analysis of phenotype induced by RNAi. Please read the
 README file for more details.R_ScriptThis file contains the script used on Rstudio for data analysis. Please read the README file for more information.READMEThis file contains information related to the "Data" and "R_script" files used for analysis in this study.
DOI: 10.5061/dryad.bg06fn2
title: Data from: Born to run? Quantifying the balance of prior bias and new information in prey escape decisions

description: Animal behaviors can often be challenging to model and predict, though
 optimality theory has improved our ability to do so. While many
 qualitative predictions of behavior exist, accurate quantitative models,
 tested by empirical data, are often lacking. This is likely due to
 variation in biases across individuals and variation in the way new
 information is gathered and used. We propose a modeling framework based on
 a novel interpretation of Bayes' theorem to integrate optimization of
 energetic constraints with both prior biases and specific sources of new
 information gathered by individuals. We present methods for inferring
 distributions of prior biases within populations rather than assuming
 known priors, as is common in Bayesian approaches to modelling behavior,
 and for evaluating the goodness of fit of overall model descriptions. We
 apply this framework to predict optimal escape during predator-prey
 encounters, based on prior biases and variation in what information prey
 use. Using this approach we collected and analyzed data characterizing
 white-tailed deer (Odocoileus virginianus) escape behavior in response to
 human approaches. We found that distance to predator alone was not
 sufficient for predicting deer flight response, and have shown that the
 inclusion of additional information is necessary. Additionally, we
 compared differences in the inferred distributions of prior biases across
 different populations and discuss the possible role of human activity in
 influencing these distributions.
description: BornToRun_DATAWhite-tailed deer FIDs, alert distances, and angle of approach from encounters with a human approacher.BornToRun_CODER script for goodness of fit and likelihood ratio analyses on one and two risk factor models of prey escape behavior. See README for more information.
DOI: 10.5061/dryad.023g3
title: Data from: Spatial discounting of food and social rewards in guppies (Poecilia reticulata).

description: In temporal discounting, animals trade off the time to obtain a reward
 against the quality of a reward, choosing between a smaller reward
 available sooner versus a larger reward available later. Similar
 discounting can apply over space, when animals choose between smaller and
 closer versus larger and more distant rewards. Most studies of temporal
 and spatial discounting in nonhuman animals use food as the reward, and it
 is not established whether animals trade off other preferred stimuli in
 similar ways. Here, we offered female guppies (Poecilia reticulata) a
 spatial discounting task in which we measured preferences for a larger
 reward as the distance to it increased relative to a closer but smaller
 reward. We tested whether the fish discounted reward types differently by
 offering subjects either food items or same-sex conspecifics as rewards.
 Before beginning the discounting tasks, we conducted validation tests to
 ensure that subjects equally valued the food and social stimuli in the
 quantities provided. In the discounting task, subjects switched their
 preferences from the larger to the smaller reward as the distance to the
 larger reward increased (spatial discounting), but the pattern and
 magnitude of discounting did not differ across the two reward types. These
 findings indicate that guppies show similar patterns of discounting food
 and social rewards in a spatial task. In an analysis of travel times,
 however, the fish swam faster to food rewards than to shoaling partners.
 This difference in travel times implies that fish temporally discounted
 social rewards less steeply than food rewards. Thus, reward type
 influences temporal discounting, suggesting a dissociation between
 temporal and spatial discounting. Our results illustrate how animals
 adjust choices and travel times depending on both the type of cost (time,
 distance) and benefits (food, social partners).
description: muehlhoff_dataThese data were collected from August 2009 to February 2010 as part of a spatial discounting experiment in guppies (Poecilia reticulata). Citation: Mühlhoff, N., Stevens, J.R., & Reader, S.M. (2011). Spatial discounting of food and social rewards in guppies (Poecilia reticulata). Frontiers in Psychology, 2, 68. doi: 10.3389/fpsyg.2011.00068 Created by Jeffrey R. Stevens on 26 April 2011 (jeffrey.r.stevens@gmail.com), ReadMe file is available in the zip file.
DOI: 10.5061/dryad.d8sv77t
title: Data from: Symbiotic immuno-suppression: is disease susceptibility the price of bleaching resistance?

description: Accelerating anthropogenic climate change threatens to destroy coral reefs
 worldwide through the processes of bleaching and disease. These major
 contributors to coral mortality are both closely linked with thermal
 stress intensified by anthropogenic climate change. Disease outbreaks
 typically follow bleaching events, but a direct positive linkage between
 bleaching and disease has been debated. By tracking 152 individual coral
 ramets through the 2014 mass bleaching in a South Florida coral
 restoration nursery, we revealed a highly significant negative correlation
 between bleaching and disease in the Caribbean staghorn coral, Acropora
 cervicornis. To explain these results, we propose a mechanism for
 transient immunological protection through coral bleaching: Removal of
 Symbiodinium during bleaching may also temporarily eliminate suppressive
 symbiont modulation of host immunological function. We contextualize this
 hypothesis within an ecological perspective in order to generate testable
 predictions for future investigation.
description: Monthly Observations of
 Disease and BleachingThis spreadsheet tracks
 individual ramets (numbered 1-10) within several genets (labelled A-Z) of
 Acropora cervicornis through the 2014 bleaching event and subsequent
 disease outbreak. From this, ramets are categorized as either bleached,
 diseased, bleached and diseased, or healthy, per the associated journal
 article.uploaded to Dryad for accepted
 disease and bleaching paper.xlsx
DOI: 10.5061/dryad.s7423sv
title: Data from: Reciprocal facilitation between large herbivores and ants in a semi-arid grassland

description: While positive interactions have been well documented in plant and sessile
 benthic marine communities, their role in structuring mobile animal
 communities and underlying mechanisms has been less explored. Using field
 removal experiments, we demonstrated that a large vertebrate herbivore
 (cattle; Bos tarurs) and a much smaller invertebrate (ants; Lasius spp.),
 the two dominant animal taxa in a semi-arid grassland in Northeast China,
 facilitate each other. Cattle grazing led to higher ant mound abundance
 compared to ungrazed sites, while the presence of ant mounds increased the
 foraging of cattle during the peak of the growing season. Mechanistically,
 these reciprocal positive effects were driven by habitat amelioration and
 resource (food) enhancement by cattle and ants (respectively). Cattle
 facilitated ants, likely by decreasing plant litter accumulation by
 herbivory and trampling, allowing more light to reach the soil surface
 leading to microclimatic conditions that favor ants. Ants facilitated
 cattle likely by increasing soil nutrients via bioturbation, increasing
 food (plant) biomass and quality (N content) for cattle. Our study
 demonstrates reciprocal facilitative interactions between two animal
 species from phylogenetically very distant taxa. Such reciprocal positive
 interactions may be more common in animal communities than so far assumed,
 and they should receive more attention to improve our understanding of
 species coexistence and animal community assembly.
description: Li et al. Cattle-ant
 facilitation dataLi et al. Cattle-ant
 facilitation data-Proceedings B
DOI: 10.5061/dryad.3dr8k
title: Data from: Genetic and epigenetic differentiation between natural Betula ermanii (Betulaceae) populations inhabiting contrasting habitats

description: Disentangling the molecular mechanisms of adaptation in natural plant
 populations in response to different environmental conditions is a central
 topic in evolutionary biology. In the present study, we investigated a
 wind-pollinated woody species of Changbai Mountain of northeastern China,
 namely, Betula ermanii Cham. This woody species B. ermanii is not only a
 dominant species in subalpine forest (SF), but it also occurs in the
 alpine tundra (AT) regions. This attribute indicates that it may play
 important roles in the two contrast habitats. In order to evaluate the
 influences of different habitats on differentiation in B. ermanii, we
 assessed the genetic and epigenetic population structure in selected
 populations from two contrasting habitats by using amplified fragment
 length polymorphism (AFLP) and methylation-sensitive AFLP techniques.
 According to our results, the AT group not only exhibits higher genetic
 and epigenetic diversity than the SF group but also shows greater
 population genetic and epigenetic differentiation. In addition, the
 analysis of cytosine methylation levels also revealed that the AT group
 exhibits higher degrees of genome methylation than the SF group. Taken
 together, our results indicate that populations from two contrasting
 habitats show significantly different genetic and epigenetic population
 structures. Along with other potential explanations, these findings
 suggest that environmental conditions could play an important role in
 facilitating adaptive evolution in B. ermanii.
description: AFLP from two
 contrasting habitat typesWe get these data from
 AFLP. In our study, we compare the genetic diversity and differentiation
 between two contrasting habitat types of Betula ermanii. Our results
 indicated that the two different type show different genetic structure. We
 presume that this species evolve under natural
 selection.AFLP10.txtMSAP data get from Betula ermaniiWe get these data from AFLP. In our study, we compare the epigenetic diversity and differentiation between two contrasting habitat types of Betula ermanii. Our results indicated that the two different type show different epigenetic structure. We presume that this species evolve under natural selection.MSAP10.txt
DOI: 10.5061/dryad.5s67r
title: Data from: Regular bottlenecks and restrictions to somatic fusion prevent the accumulation of mitochondrial defects in Neurospora

description: The replication and segregation of the multi-copy mitochondrial DNA
 (mtDNA) are not under strict control of the nuclear DNA. Within-cell
 selection may thus favour variants with an intracellular selective
 advantage but a detrimental effect on cell fitness. High relatedness among
 the mtDNA variants of an individual is predicted to disfavour such
 deleterious selfish genetic elements, but experimental evidence for this
 hypothesis is scarce. We studied the effect of mtDNA relatedness on the
 opportunities for suppressive mtDNA variants in the fungus Neurospora
 carrying the mitochondrial mutator plasmid pKALILO (pKAL). During growth,
 this plasmid integrates into the mitochondrial genome, generating
 suppressive mtDNA variants. These mtDNA variants gradually replace the
 wild-type mtDNA, ultimately culminating in growth arrest and death. We
 show that regular sequestration of mtDNA variation is required for
 effective selection against suppressive mtDNA variants. First, bottlenecks
 in the number of mtDNA copies from which a ‘Kalilo’ culture started
 significantly increased the maximum lifespan and variation in life span
 among cultures. Second, restrictions to somatic fusion among fungal
 individuals, either by using anastomosis-deficient mutants or by
 generating allotype diversity, prevented the accumulation of suppressive
 mtDNA variants. We discuss the implications of these results for the
 somatic accumulation of mitochondrial defects during ageing.
description: dataset Bastiaans et al.
 (2014)These are the data
 collected and used for the publication "Regular bottlenecks and
 restrictions to somatic fusion prevent the accumulation of mitochondrial
 defects in Neurospora". For further details please read the
 paper.raw
 data Bastiaans et al.xlsx
DOI: 10.5281/zenodo.17868203
title: SHM_415479_HST_3D

description: Photogrammetric 3D model of a chisel from the Middle Neolithic, collected in Skåne, Sweden and currently held in the collections of the National Historical Museums in Stockholm. 

Link to the Dynamic Collection platform 

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=515

Link to Sök I Samlingarna 

https://samlingar.shm.se/object/A7DA5FCD-3060-48AE-867B-6308CDE0935D
DOI: 10.5281/zenodo.17868202
title: SHM_415479_HST_3D

description: Photogrammetric 3D model of a chisel from the Middle Neolithic, collected in Skåne, Sweden and currently held in the collections of the National Historical Museums in Stockholm. 

Link to the Dynamic Collection platform 

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=515

Link to Sök I Samlingarna 

https://samlingar.shm.se/object/A7DA5FCD-3060-48AE-867B-6308CDE0935D