cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20103743.v3
title: Data for nematode diversity estimation in a paddy–upland rotation system

description: Community composition of soil nematodes under five fertilization treatments in a paddy rice-upland wheat rotation system. CK: unfertilized control; CF: chemical fertilizer; MCF: pig manure plus chemical fertilizer; SCF: straw plus chemical fertilizer; MSCF: pig manure plus straw plus chemical fertilizer.
DOI: 10.6084/m9.figshare.20103743.v2
title: Data for nematode diversity estimation in a paddy–upland rotation system

description: Community composition of soil nematodes under five fertilization treatments in a paddy rice-upland wheat rotation system. CK: unfertilized control; CF: chemical fertilizer; MCF: pig manure plus chemical fertilizer; SCF: straw plus chemical fertilizer; MSCF: pig manure plus straw plus chemical fertilizer.
DOI: 10.5517/ccdc.csd.cc2cqbl1
title: CCDC 2196213: Experimental Crystal Structure Determination

description: Related Article: Chunlan Zhou, Haolin Zheng, Ya Chen, Guojiang Mao, Guo-Jun Deng|2023|J.Org.Chem.|88|1533|doi:10.1021/acs.joc.2c02556
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22121684.v1
title: Data for nematode diversity estimation in a paddy–upland rotation system

description: Community composition of soil nematodes under five fertilization treatments in a paddy rice-upland wheat rotation system. CK: unfertilized control; CF: chemical fertilizer; MCF: pig manure plus chemical fertilizer; SCF: straw plus chemical fertilizer; MSCF: pig manure plus straw plus chemical fertilizer.
DOI: 10.5281/zenodo.7653150
title: ostorhinchus_rueppellii_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7653149
title: ostorhinchus_rueppellii_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7653162
title: ostorhinchus_rueppellii_ragtag_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7653161
title: ostorhinchus_rueppellii_ragtag_1.fasta.gz

description: .
DOI: 10.6084/m9.figshare.20032238
title: Social parasite exposure and infectious disease defenses in acorn ants

description: This dataset is from a lab experiment at the Univeristy of Florida in September-December, 2019. In this experiment we manipulated spcial parasite exposure on ant colonies and measured any impacts to disease defenses at the collective levels.
DOI: 10.6084/m9.figshare.20032238.v1
title: Social parasite exposure and infectious disease defenses in acorn ants

description: This dataset is from a lab experiment at the Univeristy of Florida in September-December, 2019. In this experiment we manipulated spcial parasite exposure on ant colonies and measured any impacts to disease defenses at the collective levels.
DOI: 10.5281/zenodo.7653178
title: appendix 6 characteristics of the included studies

description: The file contains the characteristics of the included studies in the master thesis "NON-PHARMACOLOGICAL INTERVENTIONS FOR THE MANAGEMENT OF PAIN IN PATIENTS WITH SPINAL CORD INJURY – A SYSTEMATIC REVIEW"
DOI: 10.5281/zenodo.7653177
title: appendix 6 characteristics of the included studies

description: The file contains the characteristics of the included studies in the master thesis "NON-PHARMACOLOGICAL INTERVENTIONS FOR THE MANAGEMENT OF PAIN IN PATIENTS WITH SPINAL CORD INJURY – A SYSTEMATIC REVIEW"
DOI: 10.5281/zenodo.7653180
title: Anhang 7 Ausführliche Risk of Bias-Bewertung der eingeschlossenen Studien

description: The file contains the detailed risk of bias assessment of the included studies in the master thesis "NON-PHARMACOLOGICAL INTERVENTIONS FOR THE TREATMENT OF PAIN IN PATIENTS WITH SPINAL CORD INJURY" – A SYSTEMATIC REVIEW
DOI: 10.5281/zenodo.7653179
title: Anhang 7 Ausführliche Risk of Bias-Bewertung der eingeschlossenen Studien

description: The file contains the detailed risk of bias assessment of the included studies in the master thesis "NON-PHARMACOLOGICAL INTERVENTIONS FOR THE TREATMENT OF PAIN IN PATIENTS WITH SPINAL CORD INJURY" – A SYSTEMATIC REVIEW
DOI: 10.5281/zenodo.7653167
title: Effect of light intensity in the nest site on eggshell pigmentation in a hole-nesting passerine

description: Dataset used in the associated paper 'Effect of light intensity in the nest site on eggshell pigmentation in a hole-nesting passerine'.
DOI: 10.5281/zenodo.7653168
title: Effect of light intensity in the nest site on eggshell pigmentation in a hole-nesting passerine

description: Dataset used in the associated paper 'Effect of light intensity in the nest site on eggshell pigmentation in a hole-nesting passerine'.
DOI: 10.5519/qd.lvfaj0e0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5517/ccdc.csd.cc2df3vt
title: CCDC 2217146: Experimental Crystal Structure Determination

description: Related Article: Xingyu Yi, Junxiang Gao, Hanwen Qin, Liping Zheng, Weixuan Zeng, Huajie Chen|2023|Org.Lett.|25|972|doi:10.1021/acs.orglett.3c00001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2df3xw
title: CCDC 2217148: Experimental Crystal Structure Determination

description: Related Article: Xingyu Yi, Junxiang Gao, Hanwen Qin, Liping Zheng, Weixuan Zeng, Huajie Chen|2023|Org.Lett.|25|972|doi:10.1021/acs.orglett.3c00001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2df3yx
title: CCDC 2217149: Experimental Crystal Structure Determination

description: Related Article: Xingyu Yi, Junxiang Gao, Hanwen Qin, Liping Zheng, Weixuan Zeng, Huajie Chen|2023|Org.Lett.|25|972|doi:10.1021/acs.orglett.3c00001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.4eeurz0j
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.5519/qd.2qwws1u5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2324 records)
DOI: 10.25345/c50000930
title: MassIVE MSV000091322 - Multi-modal Proteomic Characterization of Lysosomal Function and Proteostasis in Progranulin-Deficient Neurons
title: Progranulin (PGRN) is a lysosomal protein involved in various neurodegenerative diseases. Over 70 mutations discovered in the GRN gene all result in reduced expression of PGRN protein. However, the detailed molecular function of PGRN within lysosomes and the impact of PGRN deficiency on lysosomal biology remain unclear. Here we leveraged multi-faceted proteomic techniques to comprehensively characterize how PGRN deficiency changes the molecular and functional landscape of neuronal lysosomes.
DOI: 10.5281/zenodo.7653347
title: Belief, Affect, and Cognitive Dissonance in a Simulated Election - Main Study Data Set

description: Data gathered using Amazon's Mechanical Turk (MTurk) task platform and the Qualtrics survey platform for a simulated election experiment focusing on belief change and affect in response to repeated counterattitudinal information exposure.
DOI: 10.5281/zenodo.7653346
title: Belief, Affect, and Cognitive Dissonance in a Simulated Election - Main Study Data Set

description: Data gathered using Amazon's Mechanical Turk (MTurk) task platform and the Qualtrics survey platform for a simulated election experiment focusing on belief change and affect in response to repeated counterattitudinal information exposure.
DOI: 10.5519/qd.i2n8acbu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (0 records)
DOI: 10.6084/m9.figshare.22102016
title: Drug effectiveness for COVID-19 inpatients inferred from Japanese medical claim data using propensity score matching_supplement data.csv

description: A summary of the estimation results of logistic regression for drug administration on patients' age, sex, underlying diseases, pharmaceutical therapy, vaccine coverage, and prevalence in the mutated strains as explanatory variables.
DOI: 10.6084/m9.figshare.22121804
title: RFLPs for 1001 Arabidopsis Genomes

description: <br> A list of all the RFLP sites that are variable among the 1001 Arabidopsis genomes for EcoRI, BamHI, NotI, PstI, and HindIII. The genotypes of all 1135 lineages are listed at each of those sites. The format is a modified VCF format, such that 0|0 means that the accession has the restriction site (i.e., same genotype as TAIR10), while 1|1 means that the accession lacks the restriction site (i.e., different genotype from TAIR10). If you'd like another restriction enzyme added, please get in touch (joel.sharbrough@nmt.edu), or feel free to use the code posted at the GitHub repo (https://github.com/jsharbrough/1001ArabidopsisGenomes_RFLPs) to do it yourself. Amplicons and primers for selected markers are also posted here.
DOI: 10.6084/m9.figshare.22121804.v1
title: RFLPs for 1001 Arabidopsis Genomes

description: <br> A list of all the RFLP sites that are variable among the 1001 Arabidopsis genomes for EcoRI, BamHI, NotI, PstI, and HindIII. The genotypes of all 1135 lineages are listed at each of those sites. The format is a modified VCF format, such that 0|0 means that the accession has the restriction site (i.e., same genotype as TAIR10), while 1|1 means that the accession lacks the restriction site (i.e., different genotype from TAIR10). If you'd like another restriction enzyme added, please get in touch (joel.sharbrough@nmt.edu), or feel free to use the code posted at the GitHub repo (https://github.com/jsharbrough/1001ArabidopsisGenomes_RFLPs) to do it yourself. Amplicons and primers for selected markers are also posted here.
DOI: 10.6084/m9.figshare.22121834
title: Physiotherapy data

description: The practice behaviours, interests and perception of MSK image interpretation among physiotherapists in Ghana
DOI: 10.5281/zenodo.7653423
title: BCdatabaser - lsu.fungi.none.2023-02-18.zip

description: Parameters: --marker-search-string LSU OR 'large subunit ribosomal RNA' --taxonomic-range Fungi --sequence-length-filter 100:2000 --sequences-per-taxon 9
description: This dataset was automatically created with data from NCBI using the BCdatabaser tool
description: {"references": ["Keller et al. (2019) BCdatabaser: on-the-fly reference database creation for (meta-)barcoding. EcoEvoRxiv (2019); https://doi.org/10.32942/osf.io/cmfu2 - https://github.com/molbiodiv/bcdatabaser", "eutils: Sayers E. E-utilities Quick Start. 2008 Dec 12 [Updated 2018 Oct 24]. In: Entrez Programming Utilities Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK25500/", "NCBI::Taxonomy: F\u00f6rster et al. https://github.com/greatfireball/NCBI-Taxonomy - F\u00f6rster F. greatfireball/NCBI-Taxonomy v0.90. Zenodo. 2018 Oct 15; https://doi.org/10.5281/zenodo.1462861", "SeqFilter: Hackl et al. https://github.com/BioInf-Wuerzburg/SeqFilter", "dispr: Cofield et al. https://github.com/douglasgscofield/dispr", "Krona: Ondov BD, Bergman NH, and Phillippy AM. Interactive metagenomic visualization in a Web browser. BMC Bioinformatics. 2011 Sep 30; 12(1):385."]}
DOI: 10.5281/zenodo.7653422
title: BCdatabaser - lsu.fungi.none.2023-02-18.zip

description: Parameters: --marker-search-string LSU OR 'large subunit ribosomal RNA' --taxonomic-range Fungi --sequence-length-filter 100:2000 --sequences-per-taxon 9
description: This dataset was automatically created with data from NCBI using the BCdatabaser tool
description: {"references": ["Keller et al. (2019) BCdatabaser: on-the-fly reference database creation for (meta-)barcoding. EcoEvoRxiv (2019); https://doi.org/10.32942/osf.io/cmfu2 - https://github.com/molbiodiv/bcdatabaser", "eutils: Sayers E. E-utilities Quick Start. 2008 Dec 12 [Updated 2018 Oct 24]. In: Entrez Programming Utilities Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK25500/", "NCBI::Taxonomy: F\u00f6rster et al. https://github.com/greatfireball/NCBI-Taxonomy - F\u00f6rster F. greatfireball/NCBI-Taxonomy v0.90. Zenodo. 2018 Oct 15; https://doi.org/10.5281/zenodo.1462861", "SeqFilter: Hackl et al. https://github.com/BioInf-Wuerzburg/SeqFilter", "dispr: Cofield et al. https://github.com/douglasgscofield/dispr", "Krona: Ondov BD, Bergman NH, and Phillippy AM. Interactive metagenomic visualization in a Web browser. BMC Bioinformatics. 2011 Sep 30; 12(1):385."]}
DOI: 10.6084/m9.figshare.22121888
title: The number of prior pregnancy losses does not impact euploidy rates in young patients with idiopathic recurrent pregnancy loss..xlsx

description: the excel data was established to investigate the relation between embryo ploidy and recurrent pregnancy loss. It includes demographic and embryological data
DOI: 10.6084/m9.figshare.19164584.v2
title: Expression and genotype datasets associated with the preprint titled: A role for heritable transcriptomic variation in maize adaptation to temperate environments https://www.biorxiv.org/content/10.1101/2022.01.28.478212v1

description: The expression profiled from 340 distinct maize genotypes used for an eGWAS analysis. In the file named 'eGWAS340_repMerged_Untransformed_fpkm.csv' , FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were averaged. <br><br>'eGWAS340_repUnmerged_Untransformed_fpkm.csv': FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were kept raw for heritability calculation. <br>'eGWAS340_maf05het02.hmp.txt.gz': the SNP genotype data used for eQTL mapping and visible phenotype GWAS <br><br><br>
DOI: 10.6084/m9.figshare.22121900
title: NNMLF Data

description: Data used to validate the NNMLF.
DOI: 10.6084/m9.figshare.22121900.v1
title: NNMLF Data

description: Data used to validate the NNMLF.
DOI: 10.5281/zenodo.7653537
title: Dataset of "Poster - BugOss: Regression Bug Benchmark for Empirical Study of Regression Fuzzing Techniques"

description: Dataset of "Poster - BugOss: Regression Bug Benchmark for Empirical Study of Regression Fuzzing Techniques"
DOI: 10.5281/zenodo.7653536
title: Dataset of "Poster - BugOss: Regression Bug Benchmark for Empirical Study of Regression Fuzzing Techniques"

description: Dataset of "Poster - BugOss: Regression Bug Benchmark for Empirical Study of Regression Fuzzing Techniques"
DOI: 10.5281/zenodo.7653567
title: The rhizobia strain collection of Latvia University of Life Sciences and Technologies, containing strains from the historical rhizobia collection of Latvia University of Life Sciences and Technologies and newly isolated strains

description: List of rhizobia and non-rhizobial endophyte bacterial strains, isolated from various legumes in Latvia. These strains are a part of the Rhizobia collection, Insitute of Soil and Plant Sciences, Latvia University of Life Sciences and Technologies. List include rhizobia strain identification, isolation year and host plant.
DOI: 10.5281/zenodo.7653568
title: The rhizobia strain collection of Latvia University of Life Sciences and Technologies, containing strains from the historical rhizobia collection of Latvia University of Life Sciences and Technologies and newly isolated strains

description: List of rhizobia and non-rhizobial endophyte bacterial strains, isolated from various legumes in Latvia. These strains are a part of the Rhizobia collection, Insitute of Soil and Plant Sciences, Latvia University of Life Sciences and Technologies. List include rhizobia strain identification, isolation year and host plant.
DOI: 10.3886/e177141v1
title: Small farmer's access of improved seeds and deforestation in DR Congo

description: Since the 1960s, the increased availability of modern seed varieties (MVs) in developing countries has had large positive effects on households' well-being. However, the effect of related land use changes on deforestation and biodiversity is ambiguous. This study examines this question through a randomized control trial in a remote area in the Congo Basin rainforest with weak input and output markets. Using plot-level data on land conversion combined with remote sensing data, we find that promotion of MVs did not lead to an increase in overall deforestation by small farmers. However, farmers cleared more primary forest and less secondary forest. We attribute this to the increased demand for nitrogen required by the use of some MVs, and to the lack of alternative sources of soil nutrients, which induced farmers to shift towards cultivation of land cleared in primary forest. Unless combined with interventions to maintain soil fertility, policies to promote MVs may come at the cost of important losses in biodiversity.
DOI: 10.3886/e177141
title: Small farmer's access of improved seeds and deforestation in DR Congo

description: Since the 1960s, the increased availability of modern seed varieties (MVs) in developing countries has had large positive effects on households' well-being. However, the effect of related land use changes on deforestation and biodiversity is ambiguous. This study examines this question through a randomized control trial in a remote area in the Congo Basin rainforest with weak input and output markets. Using plot-level data on land conversion combined with remote sensing data, we find that promotion of MVs did not lead to an increase in overall deforestation by small farmers. However, farmers cleared more primary forest and less secondary forest. We attribute this to the increased demand for nitrogen required by the use of some MVs, and to the lack of alternative sources of soil nutrients, which induced farmers to shift towards cultivation of land cleared in primary forest. Unless combined with interventions to maintain soil fertility, policies to promote MVs may come at the cost of important losses in biodiversity.
DOI: 10.3886/e177141v2
title: Small farmer's access of improved seeds and deforestation in DR Congo

description: Since the 1960s, the increased availability of modern seed varieties (MVs) in developing countries has had large positive effects on households' well-being. However, the effect of related land use changes on deforestation and biodiversity is ambiguous. This study examines this question through a randomized control trial in a remote area in the Congo Basin rainforest with weak input and output markets. Using plot-level data on land conversion combined with remote sensing data, we find that promotion of MVs did not lead to an increase in overall deforestation by small farmers. However, farmers cleared more primary forest and less secondary forest. We attribute this to the increased demand for nitrogen required by the use of some MVs, and to the lack of alternative sources of soil nutrients, which induced farmers to shift towards cultivation of land cleared in primary forest. Unless combined with interventions to maintain soil fertility, policies to promote MVs may come at the cost of important losses in biodiversity.
DOI: 10.34740/kaggle/dsv/5022973
title: Nigerian Presidential Election 2023 Tweets
DOI: 10.6084/m9.figshare.3761562.v2501
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.19164584.v4
title: Expression and SNP dataset used for expression quantitative loci mapping

description: The expression profiled from 340 distinct maize genotypes used for an eGWAS analysis. In the file named 'eGWAS340_repMerged_Untransformed_fpkm.csv' , FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were averaged. <br><br>'eGWAS340_repUnmerged_Untransformed_fpkm.csv': FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were kept raw for heritability calculation. <br>'eGWAS340_maf05het02.hmp.txt.gz': the SNP genotype data used for eQTL mapping and visible phenotype GWAS <br><br><br>
DOI: 10.6084/m9.figshare.19164584.v3
title: Expression and genotype datasets associated with the preprint titled: A role for heritable transcriptomic variation in maize adaptation to temperate environments https://www.biorxiv.org/content/10.1101/2022.01.28.478212v1

description: The expression profiled from 340 distinct maize genotypes used for an eGWAS analysis. In the file named 'eGWAS340_repMerged_Untransformed_fpkm.csv' , FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were averaged. <br><br>'eGWAS340_repUnmerged_Untransformed_fpkm.csv': FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were kept raw for heritability calculation. <br>'eGWAS340_maf05het02.hmp.txt.gz': the SNP genotype data used for eQTL mapping and visible phenotype GWAS <br><br><br>
DOI: 10.5281/zenodo.7644626
title: Thermoregulatory behavior varies with altitude and season in the sceloporine Mesquite lizard.

description: In ectothermic vertebrates, body temperature is the factor that most affects physiology and behavior. Most ectotherms show limited physiological control of body temperature, so they use behavioral strategies to regulate and maintain a constant temperature within a range. The variation of environmental temperature due to altitude and seasonality could have a great impact on the regulation of body temperature in lizards, even more so in elevation gradients, in which environmental temperature decreases with elevation. We chose three populations of the lizard Sceloporus grammicus that inhabit along an altitudinal gradient at 2500, 3400, and 4100 m and compared some seasonal (spring, summer, and autumn) thermal traits: 1. Body temperature in the field when the lizards were active<br> 2. The relationship between body, air, and substrate temperatures where they were first observed<br> 3. The temperature that they selected in a thermal gradient in laboratory conditions<br> 4. The precision of thermoregulation, the thermal quality of the environment, the effectiveness of thermoregulation, and the Blouin-Demers index<br> 5. The ambient temperatures available during the period of activity (Operative temperature) Thus, our data suggest that the thermal quality of the environment is low at higher altitudes and in summer, while lizards are capable of modifying their body temperature when they are active in the field and the temperature they select in the laboratory due to the effect of altitude and of the season, according to the requirements they have in each part of the year.