cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26926918.v1
title: <b>Haplotype-resolved genome assembly of </b><b>the </b><b>tetraploid </b><b>Youcha tree</b><b> </b><b><i>Camellia meiocarpa</i></b><b> Hu</b>

description: Camellia meiocarpa Hu, a member of <b>Youcha</b>species in the genus Camellia, is an important woody edible <b>Youcha</b> plant with high ecological and economic value. The haplotype-resolved genome assembly of this tetraploid species can shed light on genomic evolution and the functional divergence among subgenomes and haplotypes. In this study, we assembled the first haplotype-resolved reference genome of C. meiocarpa at the chromosome level, utilizing a combination of sequencing technologies: PacBio HiFi, Hi-C, and Illumina platforms. The resulting scaffolds, with an N50 of 44.46 Mb and 41.40 Mb, were anchored to 60 chromosomes and further assigned to four distinct haplotypes, each with unique transposon characteristics. The lengths of four hyplotypes are 2967.25Mb, 3041.66Mb, 2946.45Mb and 3030.54Mb. A total of 51336, 52010, 51586, and 52631 protein-coding genes were predicted for each of the four haplotypes, of which 99.4% were functionally annotated. Following annotation, we identified non-coding RNAs and repetitive elements within the four haplotypes of C. meiocarpa. Genome rearrangements and unique gene families revealed significant functional divergence among the haplotypes, suggesting their distinct roles in controlling vital processes and phenotypes. This genomic resource of the tetraploid C. meiocarpa is expected to greatly facilitate research at the molecular and genetic levels, particularly for the conservation and utilization of the <b>Youcha</b>.
DOI: 10.6084/m9.figshare.17206520.v1
title: Cat# EA 1022-9601 G, GAD.pdf

description: Cat# EA 1022-9601 G, GAD
DOI: 10.6084/m9.figshare.26411008.v2
title: Efficacy of China's clean air actions to tackle PM2.5 pollution between 2013 and 2020

description: Beginning in 2013, China launched two phases (2013–2017 and 2017–2020) of clean air actions that have led to substantial reductions in PM<sub>2.5</sub> concentrations. However, improvement in PM<sub>2.5</sub> pollution was notably slowing down during Phase II. Here, we quantified the efficacy and drivers of PM<sub>2.5</sub> improvement and evaluated the associated cost during 2013–2020 using an integrated framework that combines an emission inventory model, a chemical transport model, and detailed cost information.
DOI: 10.6084/m9.figshare.26816026.v3
title: Learning Correlations between Computational Scale and Performance for Accurate Numerical Modeling: Application Case of Dam-Break Flood Processes

description: Learning Correlations between Computational Scale and Performance for Accurate Numerical Modeling: Application Case of Dam-Break Flood Processes.The specific datasets and code.
DOI: 10.6084/m9.figshare.3381328.v1
title: Eye Tracking Pilot Accuracy and Precision Data

description: This file contains accuracy and precision measurements and raw gaze samples taken from 12 participants in a real-world laboratory setting using Tobii X60, 60Hz Remote Eye Tracker using manufacturer's I-VT filter settings. Stimulus was displayed on a Dell 2209WA flatpanel display monitor at approximately 70cm viewing distance at a resolution of 1680x1050. <br><br> Accuracy data was calculated against fixations on 9 points distributed across upper, middle, lower, left, center, and right thirds of the display. Precision data was calculated against a single fixation for each participant on a non-moving object of focus centered in the display for three seconds' duration, resulting in 80-150 raw gaze samples per participant, dependant on the speed with which the participant was able to focus and fixate on the object.
DOI: 10.4121/13093586.v1
title: Agricultural drought maps of China

description: This dataset contains two agricultural drought maps of China mainland which are modified from the pictures of a readily published Chinese book called China Water Atlas through ArcGIS.<br>
DOI: 10.6084/m9.figshare.14498103.v1
title: microRNA database for understanding tomato fruit development and ripening

description: This data was acquire, processed and processed by me, Christopher Cedillo (TW @chrisantics).<br>This data was used for further analysis during my PhD Thesis "Gen silencing during tomato fruit development by exogenic small interfering RNA" at Universidad Autonoma de Queretaro Engineering Faculty.
DOI: 10.6084/m9.figshare.29090861.v1
title: Supplementary Materials

description: Supplementary Materials for Psychometric Evidence of Digital and Online Executive Function Tests: A Systematic Review (2013–2025):<i>This review maps psychometric evidence from the past decade on digital and online tools assessing executive functions (EF) in healthy adults. It focuses on six modern domains of validity: content, structure, external, response processes, consequences, and reliability.</i>
DOI: 10.6084/m9.figshare.12651074.v9
title: Extended Data for A rooted phylogeny resolves early bacterial evolution

description: Extended Data for A rooted phylogeny resolves early bacterial evolution
DOI: 10.6084/m9.figshare.19127822.v1
title: Blockchain and supply chain management biblio

description: Blockchain and related supply chain management articles
DOI: 10.17632/gzd9r6ffcs
title: replication_data_for_The_Local_Technology_Spillovers_of_Multinational_Firms

description: This is the replication data for the published version of the paper entitled "The Local Technology Spillovers of Multinational Firms"
DOI: 10.17632/znzvysxx6f
title: Machakos Cancer Registry Data 2015-2019

description: Background: In Kenya cancer is an increasing public health challenge, with an estimated 48,000 new cancer cases and over 33,000 deaths recorded each year. Machakos county, Kenya, recently opened a cancer centre given the increasing burden of cancer care with an aim of bringing cancer services such as surgical oncology, chemotherapy, radiotherapy, and pathological services closer to the residents of Machakos county. The county is also one of four counties selected for the universal health coverage pilot programme making it uniquely poised to inform cancer control programs at the local, national, and international levels. Methods: This study aimed to build a cancer database and comprehensively to enable future population-based cancer studies by reviewing cancer diagnosis records for selected major public hospitals in Machakos county from 2015-2019. Medical records data were retrieved from Machakos Level 5 Hospital and Kangundo, Matuu, Kathiani and Mwala Level 4 Hospitals. Results: A total of 522 cancer cases were recorded across the study period with more than a third (N=172, 33%) diagnosed August-December of 2019 when the Machakos Cancer Centre opened. Among the cancers diagnosed the majority were in women (59.2%) with cervix uteri (n=106, 34.3%) followed by breast (n=62, 20.1%) as the most common cancers. For males, oesophagus (n=52, 24.4%) followed by prostate (n=43, 20.2%) were the most common cancer types. Conclusion: It is clear that access to cancer care treatment will change referral patterns for residents in Machakos county and with the establishment of this database we expect to enable future population-based surveillance of the cancer burden to inform cancer control programs.
DOI: 10.6084/m9.figshare.27961089.v2
title: Pan-genome data files

description: Pan-genome data files generated from gut-derived MAGs and isolate genomes belonging to Klebsiella pneumoniae.
DOI: 10.6084/m9.figshare.28001564.v1
title: Material to Calculate Jet Indices (Code, Input Data and Output Data)

description: This dataset accompanies the paper "Atlantic Jet and Recurrent Weather Patterns Drove Past Hydroclimate Extremes in Europe" by Stefan Brönnimann, Jörg Franke, Veronika Valler, Ralf Hand, Eric Samakinwa,,3 Elin Lundstad, Angela-Maria Burgdorf, Laura Lipfert, Lucas Pfister, Noemi Imfeld, and Marco RohrerThe zip-File contains the R code for calculating the jet indices described in the paper as well as the calculated indices. It contains the filsCode: jet_Indices.RInput: pattern_strength.txt, pattern_tilt.txt, pattern_latitude.txt (files with the patterns from which jet indices are calculated with linear regression, rows = longitudes from 30° W to 40°E, columns from 75 to 35° N (north to south)latitude_weights.txt: latitude weights for the regression, rows = longitudes from 30° W to 40°E, columns from 75 to 35° N (north to south)z500.ltm.RData long term mean Z500 for calculating anomalies, dimensions are longitude (30° W to 40°E), latitude (75 to 35° N), and calendar month (Jan-Dec)ModE-RA_m041_geopoth_50000_abs_1420-2009.nc is a sample input file from ModE-RAIndices:ModE-RAclim-strength File with monthly indices of jet strength from 1421-2008 for all 20 members of ModE-RA (#41-60)ModE-RA-tilt File with monthly indices of jet tilt from 1421-2008 for all 20 members of ModE-RA (#41-60)ModE-RA-latitude File with monthly indices of jet latitude from 1421-2008 for all 20 members of ModE-RA (#41-60)ModE-Sim-strength File with monthly indices of jet strength from 1421-2008 for all 20 members of ModE-Sim (#41-60)ModE-Sim-tilt File with monthly indices of jet tilt from 1421-2008 for all 20 members of ModE-Sim (#41-60)ModE-Sim-latitude File with monthly indices of jet latitude from 1421-2008 for all 20 members of ModE-Sim (#41-60)ModE-RAclim-strength File with monthly indices of jet strength from 1421-2008 for all 100 members of ModE-RAclim (#01-100)ModE-RAclim-tilt File with monthly indices of jet tilt from 1421-2008 for all 100 members of ModE-RAclim (#01-100)ModE-RAclim-latitude File with monthly indices of jet latitude from 1421-2008 for all 100 members of ModE-RAclim (#01-100)
DOI: 10.6084/m9.figshare.4503113.v1
title: mobilityLinks

description: This file is a link between local inventor IDs (with addresses found ~20km from each other) and mobile inventor IDs (referring to the same individual, but found &gt;20km from each other). 1015485 lines, '|' delimited.<br>localID: the local id of the individualmobileID: the mobile id of the individual.
DOI: 10.6084/m9.figshare.11984709.v1
title: Additional file 5 of Dietary restriction of amino acids for Cancer therapy

description: Additional file 5.
DOI: 10.6084/m9.figshare.12795062.v1
title: raw data for chemitry-A European Journal.rar

description: Enabling biopolymer depolymerisation under mild conditions. A Cu/TEMPO system was used to modify lignin’s b-O-4 unit to give ester. containing chains that can be easily depolymerized. This chemistry was successfully applied to relevant dimeric and<br>oligomeric substrates. <br><br>
DOI: 10.6084/m9.figshare.21679231.v1
title: Urban mobility indicators in the Metropolitan Region of São Paulo based on the Origin and Destination Metro survey

description: Abstract The results of the 2017 Origin and Destination (OD) Metro survey for the Metropolitan Region of São Paulo (acronym in Portuguese: RMSP) were published in 2019. Through a spatial analysis of open data from the OD survey, this article aims to identify characteristics of the daily commuting performed by RMSP residents, investigating spatial patterns of travel time, mode choice, motorization rate, mobility and immobility index, considering population distribution according to different income ranges and disaggregated by OD zone. The 2017 results are compared to those of 2007 to investigate what changed and what remained during the decade.
DOI: 10.6084/m9.figshare.3467939.v1
title: Supplementary Material for: Endovascular Treatment in Patients with Persistent Internal Carotid Artery Occlusion after Intravenous Tissue Plasminogen Activator: A Clinical Effectiveness Study

description: <br><strong><em>Background:</em></strong> There has been no large-scale trial comparing endovascular treatment (add-on EVT) after intravenous tissue plasminogen activator (IV tPA) and IV tPA alone in acute ischemic stroke (AIS) caused by internal carotid artery occlusion (ICAO). We aimed at investigating the effectiveness and safety of add-on EVT after IV tPA in AIS patients with ICAO. <b><i>Methods:</i></b> Between March 2010 and March 2013, 3,689 consecutive ischemic stroke patients who were hospitalized within 4.5 h of onset were identified using a prospective stroke registry at 11 centers in Korea. Among them, patients with persistent ICAO after receiving IV tPA and whose 3-month modified Rankin Scale (mRS) was available were finally enrolled. A propensity score analysis with inverse-probability of treatment weighting was used to eliminate baseline imbalances between those receiving add-on EVT and IV tPA alone. <b><i>Results:</i></b> Among 264 patients enrolled in this study (mean age 71.4; male 56.4%; median National Institute of Health Stroke Scale score 15), 117 (44.3%) received add-on EVT. The add-on EVT group had a higher frequency of favorable outcome on the mRS ≤2 (35.0 vs. 18.4%; adjusted OR (aOR) 2.79; 95% CI 1.66-4.67) and lower mortality (17.9 vs. 35.4%; aOR 0.24; 95% CI 0.13-0.42) at 3 months, when compared to the IV tPA-alone group. Add-on EVT did not significantly increase the risk of symptomatic hemorrhage (5.1 vs. 4.1%; aOR 1.01; 95% CI 0.37-2.70). The rate of successful recanalization (thrombolysis in cerebral infarction grade ≥2b) in the add-on EVT group was 69.2%. <b><i>Conclusions:</i></b> Compared to an IV tPA alone, add-on EVT can improve clinical outcomes in patients with symptomatic ICAO within 4.5 h of onset without a significant increase of symptomatic hemorrhage.
DOI: 10.6084/m9.figshare.11176289.v1
title: Supplementary Material for: Integrative Network Analysis of Multi-Omics Data in the Link between Plasma Carotenoid Concentrations and Lipid Profile

description: <b><i>Introduction:</i></b> Carotenoids, which are a reliable biomarker of fruit and vegetable consumption, are positively associated with the lipid profile. Circulating carotenoid concentrations may interact with several omics profiles including genome, transcriptome, and epigenome. Few studies have used multi-omics approaches, and they rarely include environmental factors, such as diet. <b><i>Objective:</i></b> The objective of this observational study was to examine the potential role of multi-omics data in the interconnection between diet, represented by total carotenoids, and lipid profile using weighted gene correlation network analysis (WGCNA). <b><i>Methods:</i></b> Blood leukocyte DNA methylation levels of 472,245 CpG sites and whole blood gene expression levels of 18,160 transcripts were tested for associations with total carotenoid concentrations using regressions in 48 healthy subjects. WGCNA was used to identify co-omics modules and hub genes related to the lipid profile. <b><i>Results:</i></b> Among genes associated with total carotenoid concentrations, a total of 236 genes were identified at both DNA methylation and gene expression levels. Using WGCNA, six modules, consisting of groups of highly correlated genes represented by colors, were identified and linked to the lipid profile. Probes clustered in the turquoise and green modules correlated with plasma lipid concentrations. A total of 28 hub genes were identified. <b><i>Conclusions:</i></b> Genome-wide DNA methylation and gene expression levels were both associated with plasma total carotenoid concentrations. Several hub genes, mostly involved in lipid metabolism and inflammatory response with several genetic variants associated with plasma lipid concentrations, came out of the integrative analysis. This provides a comprehensive understanding of the interactive molecular system between carotenoids, omics, and plasma lipid profile.
DOI: 10.6084/m9.figshare.27390411.v1
title: OlympusIX05.zip

description: SLiMIA (Spheroid Light Microscope Image Atlas) provides light microscopy images (and manual segmentations/ground truths) of spheroids from 50 cell lines, 9 culture media, 4 formation methods and multiple seeding densities.This folder contains specifically the images obtained with an Olympus IX05 light microscope.
DOI: 10.6084/m9.figshare.24147396.v1
title: headFixed_rippleData

description: head fixed mice SWR dataset along computed features
DOI: 10.17632/77z4nkzp7h
title: ANALYSIS OF INSTITUTIONAL STRENGTHENING OF GRAM PANCHAYATS PROGRAM IN WEST BENGAL— A STUDY ON DEVELOPMENT PERSPECTIVE

description: West Bengal is the pioneering state in establishment of the three tier panchayats system for rural government in India. West Bengal government, strengthening the institutional capacity of gram panchayat with initiated the Institutional Strengthening of Gram Panchayat (ISGP) project in 2010 with associated from World Bank. The main focus on this paper is to how the ISGP project increased the performance level of the gram panchayats and also monitoring the project planning, budgeting and procurement of overall functioning.
DOI: 10.17632/sff5wvscpf
title: Data

description: The data of China's A-share listed companies from 2004-2023
DOI: 10.17632/dfz9jzf8yr
title: Dataset of analysis of drinking water samples and surveys in four Colombian rural communities

description: - Physicochemical and microbiological characterization of water samples for human consumption in households located in Colombian rural area. 
 - Results of surveys applied in households.
DOI: 10.6084/m9.figshare.14453454.v1
title: The Reverse Matilda Effect: How Does Focusing on Women in an Academic Field Affect Its Attractiveness?

description: It is often assumed that highlighting the contributions of female researchers to academic fields may make those fields more attractive to women, thereby encouraging female participation. The present study (n=802) aimed to test that assumption by investigating the impact of messages highlighting the contributions of women researchers to mathematics, psychology, philosophy, literary studies, and biology on the perception of those fields. We found that these messages did not encourage women to participate in the respective academic field. And more strongly they led both women and men to see that academic field as less interesting and worthy of study. We propose that the effect observed here, and previously not discussed in literature, is the reverse of the well-known Matilda effect, where the contributions of female researchers to academic fields are underappreciated to the point of erasure or misattribution to men. We also argue that these effects are the result of gender stereotyping that takes what are supposedly male characteristics as better suited for research work that what are supposedly female characteristics. Finally we suggest how to counteract this reverse Matilda Effect.<br>
DOI: 10.6084/m9.figshare.11521890.v1
title: Data Sharing Behaviours of Health and Medical Researchers

description: This data is a subset of a larger survey collected from health and medical researchers, related to their their data management practices. This data is associated with data sharing behaviours and are being used as an evidence-base to design strategies and interventions to address targeted behaviours.
DOI: 10.6084/m9.figshare.25040093.v1
title: Complete dataset of seed ingestion by Anatidae in North America (Almeida et al. 2024)

description: This dataset comprises five tables used in Almeida et al. 2024.. 'complete_dataset.csv' has studies with information on seeds ingested by Anatidae species in North America. 'qualitative_matrix.csv' has a general qualitative waterfowl by plant species matrix indicating the presence or absence of each seed species in the diet of each waterfowl species. 'quantitative_matrix.csv' has a quantitative matrix containing the occurrence of each seed species in the diet of each bird species, in which we included the number of individual birds (or faecal samples) sampled in each study. 'waterfowl_traits.csv' contains trait values for each waterfowl species. 'plant_traits.csv' contains trait values for each plant species that was found to be ingested by North American waterfowl.
DOI: 10.6084/m9.figshare.22109558.v2
title: Primary School Facility Observation Survey data in 2021/22 (RISE Ethiopia)

description: This is a survey data about the facilities in the sample schools. The data was obtained through direct observation of the sample school facilities by the fied survey superviors <br>
DOI: 10.6084/m9.figshare.27968322.v1
title: H.pelagicus_IMU_data_De_Pascalis

description: This Inertial Measurement Units (IMUs) dataset (10s temporal resolution) accompanies the publication: <b>Flight style and time-activity budgets of the smallest petrels</b>, <i>De Pascalis et al. 2025</i>, J<i>ournal of Experimental Biology</i>, https://doi.org/10.1242/jeb.249719. More details can be found in the Material & Methods section and Supplementary Materials.<br>
DOI: 10.6084/m9.figshare.28853285.v1
title: Research data for the inventory modeling study

description: Data for the inventory study
DOI: 10.15468/dl.gpsxwb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((14.3361 -25.1213,14.3389 -25.1504,17.9648 -25.1504,17.9648 -16.1504,11.2727 -16.1504,11.2674 -18.0072,11.5829 -18.7133,12.1645 -19.4011,13.5129 -22.0148,13.9862 -22.5966,13.9591 -24.1097,14.3361 -25.1213))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013415-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.22785800.v4
title: Harvested carbon dataset of cropland in China

description: We have created a dataset that conducts a comprehensive analysis of carbon harvested from crop production in China over a 40-year period from 1981 to 2020. This dataset has a spatial resolution of 10x10 km, categorizes arable land into five types, and shows that cereal crops account for the largest proportion of total carbon harvested, at 75.9%. Over the past 40 years, the average carbon harvested in agricultural ecosystems was 0.31 Gt C yr-1. This dataset is expected to aid in estimating the carbon budget of arable ecosystems and of China as a whole. The data are available through open data repositories, providing valuable insights for research and policy-making aimed at sustainable agriculture and mitigating climate change.
DOI: 10.6084/m9.figshare.3564660.v1
title: Appendix A. Vegetation sampling and metric imputation.

description: Vegetation sampling and metric imputation.
DOI: 10.6084/m9.figshare.20367499.v1
title: Figure 2 code.R from Timescale reverses the relationship between host density and infection risk

description: Host density shapes infection risk through two opposing phenomena. First, when infective stages are subdivided among multiple hosts, greater host densities decrease infection risk through ‘safety in numbers’. Hosts, however, represent resources for parasites, and greater host availability also fuels parasite reproduction. Hence, host density increases infection risk through ‘density-dependent transmission’. Theory proposes that these phenomena are not disparate outcomes but occur over different timescales. That is, higher host densities may reduce short-term infection risk, but because they support parasite reproduction, may increase long-term risk. We tested this theory in a zooplankton-disease system with laboratory experiments and field observations. Supporting theory, we found that negative density–risk relationships (safety in numbers) sometimes emerged over short timescales, but these relationships reversed to ‘density-dependent transmission’ within two generations. By allowing parasite numerical responses to play out, time can shift the consequences of host density, from reduced immediate risk to amplified future risk.