cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2bfwk7
title: CSD 2158299: Experimental Crystal Structure Determination

description: Related Article: Ruixin Guo, Shu Guo, Mingjun Xia, Lijuan Liu, Minjuan Li, Sangen Zhao, Xiaoyang Wang|2023|Inorg.Chem.|62|3860|doi:10.1021/acs.inorgchem.2c04122
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2f2zs9
title: CSD 2237201: Experimental Crystal Structure Determination

description: Related Article: Volodymyr Gvozdetskyi, Khusboo Rana, Raquel A. Ribeiro, Aishwarya Mantravadi, Adedoyin N. Adeyemi, Renhai Wang, Huafeng Dong, Kai-Ming Ho, Yuji Furukawa, Paul C. Canfield, Julia V. Zaikina|2023|Chem.Mater.|35|3236|doi:10.1021/acs.chemmater.3c00140
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2f2r6h
title: CSD 2236966: Experimental Crystal Structure Determination

description: Related Article: H.C. Sample, B. Twamley, M.O. Senge|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|157|doi:10.1107/S2056989023001056
description: Related Article: Y. Zhang, Q. Yang, Y. Liu, A. Hu, D. Zhang, H. Li, J. Yu, J. Huang, Y. Lu, L. Zhang, Q. Xue, Y. Li, L. Jin, Q. Wen, H. Zhang|2023|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|79|157|doi:10.1107/S2052520623000483
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2f33c1
title: CSD 2237312: Experimental Crystal Structure Determination

description: Related Article: Valeriy Yu. Verchenko, Alexander V. Kanibolotskiy, Ivan V. Chernoukhov, Kirill A. Cherednichenko, Alexey V. Bogach, Konstantin O. Znamenkov, Alexey V. Sobolev, Iana S. Glazkova, Igor A. Presniakov, Andrei V. Shevelkov|2023|Inorg.Chem.|62|7557|doi:10.1021/acs.inorgchem.3c00912
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2f33d2
title: CSD 2237313: Experimental Crystal Structure Determination

description: Related Article: Valeriy Yu. Verchenko, Alexander V. Kanibolotskiy, Ivan V. Chernoukhov, Kirill A. Cherednichenko, Alexey V. Bogach, Konstantin O. Znamenkov, Alexey V. Sobolev, Iana S. Glazkova, Igor A. Presniakov, Andrei V. Shevelkov|2023|Inorg.Chem.|62|7557|doi:10.1021/acs.inorgchem.3c00912
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2f3cdb
title: CSD 2237561: Experimental Crystal Structure Determination

description: Related Article: M. Tokuda, K. Tanaka, K. Sugiyama|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|116|doi:10.1107/S2056989023000555
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2f3cfc
title: CSD 2237562: Experimental Crystal Structure Determination

description: Related Article: M. Tokuda, K. Tanaka, K. Sugiyama|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|116|doi:10.1107/S2056989023000555
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2f3qz8
title: CSD 2237920: Experimental Crystal Structure Determination

description: Related Article: Xue-Ying Zhang, Xiao-Han Zhang, Bing-Ping Yang, Jiang-Gao Mao|2023|Dalton Trans.|52|4423|doi:10.1039/D3DT00326D
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bmg7p
title: CSD 2163652: Experimental Crystal Structure Determination

description: Related Article: Christophe Legein, Monique Body, Jérôme Lhoste, Wei Li, Thibault Charpentier, Damien Dambournet|2023|J.Solid State Chem.|319|123793|doi:10.1016/j.jssc.2022.123793
description: Related Article: Christophe Legein, Monique Body, Jérôme Lhoste, Wei Li, Thibault Charpentier, Damien Dambournet|2023|J.Solid State Chem.|319|123793|doi:10.1016/j.jssc.2022.123793
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25934/pr00008921
title: The efficacy of programmed cell death protein 1 (PD-1)/programmed death-ligand 1 (PD-L1) inhibitors in solid tumor patients with different clinicopathological characteristics: a meta-analysis

description: Cancer is the leading cause of death and a significant barrier to increasing life expectancy in many countries around the world. Immunotherapy is a type of cancer treatment that helps the immune system fight cancer. Immune checkpoints can dampen the immune response of some immune system cells in the blood, such as T cells, and prevent them from killing cancer tumor cells. Programmed cell death 1 (PD1) and programmed death ligand 1 (PD-L1) are both checkpoint proteins. PD-1 is a protein found on the surface of T cells in the immune system. When PD-1 binds to PD-L1 on the surface of the cancer cell, it basically tells the T cell to leave the cancer cell alone and enables it to "hide" from an immune attack and not be killed by the T cell. Checkpoint inhibitors (ICs) are a type of immunotherapy. They block these proteins that stop the T cells from attacking the cancer cells. PD1 and PD-L1 inhibitors are most promising and have been applied to the treatment of several types of cancer. Nonetheless, a large proportion of patients do not derive benefit from this approach, so it is important to identify predictable biomarkers (molecules in body fluids or tissues that can be indicators of normal or abnormal processes or disease) to select patients with the greatest potential benefit from immunotherapy.

Some biomarkers, such as the presence of PD-L1, tumor mutational burden (TMB: the number of changes found in the genes of cancer cells), and deficient mismatch repair (dMMR: cells that have many gene mutations), have been used to screen potential beneficiaries of immunotherapy, but the results are far from satisfactory. Moreover, it has been demonstrated that gender, age, smoking status, and many other factors have an impact on the human immune system, and studies have shown that these factors might affect the efficacy of PD-1/PD-L1 inhibitors. Nonetheless, it remains unclear how these factors affect the efficacy of immunotherapy.

This study will test the associations between the outcomes of solid tumor patients treated with PD1/PD-L1 inhibitors and clinicopathological characteristics (such as age, gender, ethnicity, or the presence of biomarkers mentioned above) and identify patients' characteristics that can be used for the selection of patients with the greatest potential benefit from immunotherapy.
DOI: 10.6073/pasta/77fc873ab24e5aad9606752595116b0a
title: Nitrate (15N) Uptake from samples collected aboard Palmer LTER annual cruises off the Western Antarctic Peninsula, 2012-2014

description: Nitrate uptake by the bulk phytoplankton community was determined using tracer (&lt;10%) additions of labeled 15-NO3. Samples were collected by Go-Flo from 5 depths 0, 5, 10, 20, 65 m and incubated for 24 h at light levels of 100%, 50%, 25%, 10%, and 0% surface irradiance, respectively.
DOI: 10.5281/zenodo.10413134
title: DNA_test_181_Preprocessing_using_native.tar.gz
DOI: 10.7924/r47w6kx70
title: Data from: A cluster-randomized trial of client and provider-directed financial interventions to align incentives with appropriate case management in retail medicine outlets: results of the TESTsmART Trial in western Kenya

description: ACTs are responsible for a substantial proportion of the global reduction in malaria mortality over the last ten years. These reductions would not have been possible without publicly-funded subsidies making these drugs accessible and affordable in the private sector. However, inexpensive ACTs available in retail outlets have contributed substantially to their overconsumption. We test an innovative, scalable, and sustainable strategy to target ACT subsidies to clients with a confirmatory diagnosis. We supported point-of-care malaria testing (mRDTs) in 39 retail medicine outlets in western Kenya and randomized them to three study arms; control arm offering subsidized RDT testing for 0.4USD, client-directed intervention where all clients who received a positive RDT at the outlet were eligible for a free (fully subsidized) first-line ACT, and a combined client and provider directed intervention where clients with a positive RDT were eligible for free ACT and outlets received 0.1USD for every RDT performed. Our primary outcome was the proportion of ACT dispensed to individuals with a positive diagnostic test. Secondary outcomes included proportion of clients tested at the outlet and adherence to diagnostic test results. 43% of clients chose to test at the outlet. Test results informed treatment decisions and resulted in targeting of ACTs to confirmed malaria cases – 25.3% of test-negative clients purchased an ACT compared to 75% of untested clients. Client-directed and client+provider-directed interventions did not offer further improvements, compared to the control arm, in testing rates (RD=0.09, 95%CI:-0.08,0.26) or dispensing of ACTs to test-positive clients (RD=0.01,95% CI:-0.14, 0.16). Clients were often unaware of the price they paid for the ACT leading to uncertainty in whether the ACT subsidy was passed on to the client. We conclude that mRDTs could reduce ACT overconsumption in the private retail sector, but incentive structures are difficult to scale and their value to private providers is uncertain.
DOI: 10.5281/zenodo.10413135
title: DEMENTpy simulation data and code for Bertolet et al. 2024

description: Simulation data and analysis code for microbial interactions paper.
DOI: 10.5281/zenodo.10413136
title: DEMENTpy simulation data and code for Bertolet et al. 2024

description: Simulation data and analysis code for microbial interactions paper.
DOI: 10.5066/p9qx4ojw
title: Uptake and toxicity of clothianidin to monarch butterflies from milkweed consumption (ver. 2.0, January 2020)

description: Recent concern for the adverse effects from neonicotinoid insecticides has centered on risk for insect pollinators in general and bees specifically. However, natural resource managers are also concerned about the risk of neonicotinoids to conservation efforts for the monarch butterfly (Danaus plexippus) and need a tool to estimate risk for wild monarch butterflies exposed to clothianidin. In the present study, monarch butterfly larvae were exposed to contaminated milkweed plants from hatch until pupation, and the effects upon larval survival, larval growth, pupation success, and adult mass were measured. Soils dosed with a granular insecticide product lead to average clothianidin concentrations of 10.8 - 843 ng/g in milkweed leaves, 5.8 - 58.0 ng/g in larvae, and 2.6 - 5.1 ng/g in adult butterflies. The estimated LC50 for total mortality from consumption of milkweed leaves was 47 ng/g (29.3 - 75.8). Lastly, larval growth rate declined as clothianidin concentrations in leaves increased.
DOI: 10.6073/pasta/f0a9922559de2d48b519f816893d7682
title: Measurements of height, diameter at breast height and basal diameter for Prestoea acuminata at the Luquillo Forest Dynamics Plot (LFDP), Puerto Rico in January 2020.

description: Data were collected in January 2020 in Puerto Rico, within and outside the boundaries of LFDP. For each of these palms, we measured stem height from the ground to the base of the crown (Hbc; height of the youngest internode), diameter at 130 cm above ground (D130), and basal diameter (DB; just above the top of the roots). These are the data which accompany the publication: Height-diameter allometry for a dominant palm to improve understanding of carbon and forest dynamics in forests of Puerto Rico.
DOI: 10.5066/p9fx66oz
title: Data report for line 8 of the 2011 USGS seismic imaging survey at San Andreas Lake, San Mateo County, California

description: In June of 2011, the U.S. Geological Survey acquired high-resolution P- and S-wave seismic data across the mapped (Schussler, 1906) trace of the San Andreas Fault zone at San Andreas Lake in unincorporated San Mateo County, California. Our seismic survey consisted of seismic reflection, refraction, and guided-wave data along a 60-m-long profile. To acquire the reflection and refraction data we co-located shots and geophones, spaced every meter along the profile. We used 59 SercelTM L40A, P-wave (40-Hz vertical-component) geophones (sensitivity of 22.34 volts/meter/second) to record 59 P-wave shots and 59 SercelTM L28-LBH, S-wave (4.5-Hz horizontal-component) geophones (sensitivity of 31.3 volts/meter/second)to record 59 S-wave shots. We generated P-wave data using a charge from a Betsy SeisgunTM, with the charge placed approximately 0.4 meters (16 inches) beneath the ground surface. The charge consisted of an 8-gauge, 400-grain, blank shotgun shell. S-wave sources were generated by horizontally striking an aluminum block with a 3.5-kg sledgehammer. We acquired fault-zone-guided-wave data using approximately one pound of explosives within a mapped trace of the San Andreas Fault, approximately 1.74 km NNW of the recording arrays. The explosives were placed in a 5-cm (2 inch) diameter borehole approximately 3-meter (10 feet) deep. All data were recorded using a 60-channel Geometrics Stratavisor NX-60TM seismograph with a 24-bit analog-to-digital converter and a roll-along descaling factor, and the output data are in SEG-Y format (Barry et al, 1975). Each in-line shot was recorded for two seconds, with data recording starting 100 ms before the actual time of the shot. Data were recorded at a sampling rate of 0.5 ms, or 2000 samples per second. This report provides the metadata needed to analyze the seismic data. References Barry, K.M., Cavers, D.A. and Kneale, C.W., 1975, Recommended standards for digital tape formats: Geophysics, vol. 40, no. 2, p. 344-352. Schussler, H., 1906, The Water Supply of San Francisco, California, Before, During, and After the Earthquake of April 18, 1906 and the Subsequent Conflagration: Martin B. Brown Press, New York, 103 pp.
DOI: 10.17876/data/2021_1
title: Photo-astrometric distances, extinctions, and astrophysical parameters for Gaia EDR3 stars brighter than G = 18

description: We present a catalogue of 362 million stellar parameters, distances, and extinctions derived from Gaia's early third data release (EDR3) cross-matched with the photometric catalogues of Pan-STARRS1, SkyMapper, 2MASS, and AllWISE. The higher precision of the Gaia EDR3 data, combined with the broad wavelength coverage of the additional photometric surveys and the new stellar-density priors of the <em>StarHorse</em> code allow us to substantially improve the accuracy and precision over previous photo-astrometric stellar-parameter estimates. At magnitude G=14(17), our typical precisions amount to 3% (15%) in distance, 0.13 mag (0.15 mag) in V-band extinction, and 140 K (180 K) in effective temperature. Our results are validated by comparisons with open clusters, as well as with asteroseismic and spectroscopic measurements, indicating systematic errors smaller than the nominal uncertainties for the vast majority of objects. We also provide distance- and extinction-corrected colour-magnitude diagrams, extinction maps, and extensive stellar density maps that reveal detailed substructures in the Milky Way and beyond. The new density maps now probe a much greater volume, extending to regions beyond the Galactic bar and to Local Group galaxies, with a larger total number density. We publish our results through an ADQL query interface at the Gaia mirror at gaia.aip.de via tables containing approximations of the full posterior distributions, and by files available here. Our multi-wavelength approach and the deep magnitude limit make our results useful also beyond the next Gaia release, DR3.
DOI: 10.17876/data/2017_1
title: Tracing the Cosmic Web, public data

description: This directory contains two types of files: CUBE and FOF. The simulation that the methods were run on was: Planck cosmology, Lbox = 200Mpc/h, Nparticles = 512^3
DOI: 10.17876/data/2019_1
title: Photo-astrometric distances, extinctions, and astrophysical parameters for Gaia DR2 stars brighter than G = 18

description: Estimating Distance from Parallaxes. Distances to 1.33 Billion Stars in Gaia Data Release 2. For the vast majority of stars in the second Gaia data release, reliable distances cannot be obtained by inverting the parallax. A correct inference procedure must instead be used to account for the nonlinearity of the transformation and the asymmetry of the resulting probability distribution. Here, we infer distances to essentially all 1.33 billion stars with parallaxes published in the second Gaia data release. This is done using a weak distance prior that varies smoothly as a function of Galactic longitude and latitude according to a Galaxy model. The irreducible uncertainty in the distance estimate is characterized by the lower and upper bounds of an asymmetric confidence interval. Although more precise distances can be estimated for a subset of the stars using additional data (such as photometry), our goal is to provide purely geometric distance estimates, independent of assumptions about the physical properties of, or interstellar extinction toward, individual stars. We analyze the characteristics of the catalog and validate it using clusters.
DOI: 10.17876/data/2023_1
title: StarHorse results for spectroscopic surveys + Gaia DR3: Chrono-chemical populations in the solar vicinity, the genuine thick disk, and young-alpha rich stars

description: The Gaia mission has provided an invaluable wealth of astrometric data for more than a billion stars in our Galaxy. The synergy between Gaia astrometry, photometry, and spectroscopic surveys give us comprehensive information about the Milky Way. Using the Bayesian isochrone-fitting code StarHorse, we derive distances and extinctions for more than 10 million unique stars observed by both Gaia Data Release 3 as well as public spectroscopic surveys: 557 559 in GALAH+ DR3, 4 531 028 in LAMOST DR7 LRS, 347 535 in LAMOST DR7 MRS, 562 424 in APOGEE DR17, 471 490 in RAVE DR6, 249 991 in SDSS DR12 (optical spectra from BOSS and SEGUE), 67 562 in the Gaia-ESO DR3 survey, and 4 211 087 in the Gaia RVS part of Gaia DR3 release. StarHorse can extend the precision of distances and extinctions measurements where Gaia parallaxes alone would be uncertain. We use StarHorse for the first time to derive stellar age for main-sequence turnoff and subgiant branch stars (MSTO-SGB), around 2.5 million stars with age uncertainties typically around 30%, 15% for only SGB stars, depending on the resolution of the survey. With the derived ages in hand, we investigate the chemical-age relations. In particular, the ???? and neutron-capture element ratios versus age in the solar neighbourhood show trends similar to previous works, validating our ages. We use the chemical abundances from local subgiant samples of GALAH DR3, APOGEE DR17 and LAMOST MRS DR7 to map groups with similar chemical compositions and StarHorse ages with the dimensionality reduction technique t-SNE and the clustering algorithm HDBSCAN. We identify three distinct groups in all three samples. Their kinematic properties confirm them to be the genuine chemical thick disk, the thin disk and a considerable number of young alpha-rich stars (427), which are also a part of the delivered catalogues. We confirm that the genuine thick disk's kinematics and age properties are radically different from those of the thin disk and compatible with high-redshift (z 2) star-forming disks with high dispersion velocities. We also find a few extra chemical populations in the GALAH DR3, thanks to the availability of neutron-capture elements.
DOI: 10.17876/data/2020_2
title: StarHorse 2020 (on Spectroscopic Survey)

description: High-resolution spectroscopic data from APOGEE-2 survey Data Release 16 (DR16) with photometric data from several sources, as well as parallaxes from Gaia Data Release 2 (DR2). Using the Bayesian isochrone-fitting code StarHorse, we derive distances, extinctions and astrophysical parameters for around 388,000 APOGEE stars, achieving typical distance uncertainties of ~11% for APOGEE giants, ~5% for APOGEE dwarfs, as well as extinction uncertainties of ~0.07 mag, when all the photometric information is available. StarHorse uncertainties vary with the spectroscopic input, with the available photometry, and with the parallax uncertainties. The value-added catalog generated here was compared to the asteroseismic CoROGEE catalogue (for which distances and extinctions are also updated according to the new DR16 spectroscopic inputs) showing good agreement, but suggesting smaller parallax shifts in the mid plane fields with respect to those found in the Kepler field.
DOI: 10.5063/f1rj4gzn
title: Ephemeral wetland macroinvertebrate communities of the Great Plains

description: These data are provided to supplement and replicate Frazier et al 2023: Ephemeral wetland macroinvertebrate communities across climate regions share similar functional trait composition despite near-total taxa replacement. Included within are macroinvertebrate abundances and trait modalities and environmental/habitat data from ephemeral wetlands in Kansas, North Dakota, New Mexico, and Texas sampled between 2020 and 2022.