cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ep69h4
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Croton draco",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 176 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050300-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14134077
title: HIV-1 Drug Resistance Risk
DOI: 10.15468/dl.et7ye3
title: Occurrence Download

description: A dataset containing 170185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-62.96547 -18.40203, -62.89902 -18.39066, -62.88756 -18.38428, -62.8766 -18.38241, -62.71461 -18.2922, -62.5918 -18.1533, -62.52213 -17.98147, -62.51851 -17.96499, -62.50759 -17.80218, -62.51899 -17.75368, -62.51509 -17.69447, -62.55254 -17.53578, -62.63487 -17.39503, -62.64284 -17.3877, -62.64339 -17.38675, -62.65134 -17.37943, -62.65189 -17.3785, -62.77187 -17.2681, -62.80988 -17.24992, -62.83491 -17.22689, -62.98196 -17.15653, -63.14318 -17.13238, -63.16374 -17.13238, -63.34671 -17.1637, -63.50884 -17.25411, -63.63165 -17.39331, -63.64144 -17.41754, -63.64903 -17.42613, -63.64957 -17.42748, -63.66282 -17.44249, -63.67263 -17.46672, -63.68022 -17.47532, -63.68077 -17.47666, -63.69402 -17.49165, -63.70848 -17.52732, -63.71325 -17.53271, -63.7138 -17.53407, -63.7271 -17.5491, -63.79683 -17.72082, -63.80045 -17.7373, -63.81147 -17.90016, -63.7742 -18.05907, -63.69193 -18.20005, -63.68401 -18.20734, -63.68348 -18.20826, -63.56345 -18.3189, -63.41624 -18.38944, -63.40943 -18.39046, -63.35997 -18.41416, -63.19853 -18.43839, -63.15738 -18.43839, -62.97471 -18.40717, -62.96547 -18.40203), (-63.16374 -17.68238, -63.14318 -17.68238, -63.14856 -17.70709, -63.13828 -17.70709, -63.14007 -17.71533, -63.12979 -17.71533, -63.13158 -17.72357, -63.11102 -17.72357, -63.10922 -17.71533, -63.09894 -17.71533, -63.10074 -17.72357, -63.08017 -17.72357, -63.08196 -17.73181, -63.07168 -17.73181, -63.07348 -17.74005, -63.06319 -17.74005, -63.06858 -17.76477, -63.07887 -17.76477, -63.08066 -17.77301, -63.09095 -17.77301, -63.09635 -17.79773, -63.08606 -17.79773, -63.08787 -17.80597, -63.07758 -17.80597, -63.08299 -17.8307, -63.07271 -17.8307, -63.07451 -17.83894, -63.06423 -17.83894, -63.06603 -17.84718, -63.05575 -17.84718, -63.05936 -17.86366, -63.06965 -17.86366, -63.07994 -17.86366, -63.08174 -17.87191, -63.09203 -17.87191, -63.09022 -17.86366, -63.13137 -17.86366, -63.13318 -17.87191, -63.14347 -17.87191, -63.14528 -17.88015, -63.15557 -17.88015, -63.15738 -17.88839, -63.19853 -17.88839, -63.19672 -17.88015, -63.20701 -17.88015, -63.20519 -17.87191, -63.21548 -17.87191, -63.21367 -17.86366, -63.25481 -17.86366, -63.253 -17.85542, -63.26329 -17.85542, -63.25966 -17.83894, -63.24938 -17.83894, -63.24576 -17.82246, -63.23547 -17.82246, -63.22644 -17.78125, -63.21616 -17.78125, -63.21255 -17.76477, -63.20227 -17.76477, -63.19507 -17.73181, -63.18479 -17.73181, -63.1812 -17.71533, -63.17091 -17.71533, -63.16374 -17.68238))",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 170185 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050281-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nebvtc
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((14.614478 64.357339, 14.627793 64.396356, 14.567915 64.396356, 14.554655 64.357339, 14.614478 64.357339))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 375 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050301-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17917666
title: GSE5764 Expression Data

description: Analysis of microdissected invasive lobular and ductal breast carcinomas in relation to normal ductal and lobular cells.

The aim of our study was to identify gene expression profiles of ductal and lobular carcinomas in relation to normal ductal and lobular cells. We examined ten mastectomy specimens from postmenopausal breast cancer patients. Ductal and lobular tumor and normal cells were microdissected from cryosections. Fifty nanograms of total RNA were amplified and labeled by PCR and in vitro transcription. GCOS pairwise comparison algorithm and rank products have identified multiple genes that are differentially expressed in comparisons between ductal and lobular tumor and normal cell types. The results suggest that these genes are involved in epithelial-mesenchymal transition, TGFbeta and Wnt signaling. These changes are present in both tumor types but appear to be more prominent in lobular carcinomas.
DOI: 10.5281/zenodo.17917665
title: GSE5764 Expression Data

description: Analysis of microdissected invasive lobular and ductal breast carcinomas in relation to normal ductal and lobular cells.

The aim of our study was to identify gene expression profiles of ductal and lobular carcinomas in relation to normal ductal and lobular cells. We examined ten mastectomy specimens from postmenopausal breast cancer patients. Ductal and lobular tumor and normal cells were microdissected from cryosections. Fifty nanograms of total RNA were amplified and labeled by PCR and in vitro transcription. GCOS pairwise comparison algorithm and rank products have identified multiple genes that are differentially expressed in comparisons between ductal and lobular tumor and normal cell types. The results suggest that these genes are involved in epithelial-mesenchymal transition, TGFbeta and Wnt signaling. These changes are present in both tumor types but appear to be more prominent in lobular carcinomas.
DOI: 10.5281/zenodo.17917654
title: EMTscore
DOI: 10.15468/dl.fppu9q
title: Occurrence Download

description: A dataset containing 621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((14.749567 64.318924, 14.764543 64.362477, 14.697726 64.362477, 14.682818 64.318924, 14.749567 64.318924))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 621 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050302-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b627fn
title: Occurrence Download

description: A dataset containing 26564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((12.355603 64.208712, 12.369097 64.255790, 12.296949 64.255790, 12.283534 64.208712, 12.355603 64.208712))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 26564 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050305-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7qmnu
title: Occurrence Download

description: A dataset containing 18049 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((9.803989 63.694298, 9.812756 63.733772, 9.752582 63.733772, 9.743869 63.694298, 9.803989 63.694298))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 18049 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050306-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j39d53
title: Occurrence Download

description: A dataset containing 500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidosiren paradoxa"
 ]
}

 The dataset includes 500 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050307-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17917669
title: 2KOB ESmodels
DOI: 10.5281/zenodo.17917670
title: 2KOB ESmodels
DOI: 10.34740/kaggle/dsv/14134273
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.4ccr6b
title: Occurrence Download

description: A dataset containing 1142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((10.289974 63.941774, 10.300977 63.988435, 10.229662 63.988435, 10.218736 63.941774, 10.289974 63.941774))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1142 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050308-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5akwv
title: Occurrence Download

description: A dataset containing 2327 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence dataset of reptiles and amphibians in primary forests of the Las Piedras River, Tambopata province, Peru"
 ]
}

 The dataset includes 2327 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050309-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17917686
title: GSE5460 Expression Data

description: Analysis of microdissected invasive lobular and ductal breast carcinomas in relation to normal ductal and lobular cells.

Predictors built from gene expression data accurately predict ER, PR, and HER2 status, and divide tumor grade into high-grade and low-grade clusters; intermediate-grade tumors are not a unique group. In contrast, gene expression data cannot be used to predict tumor size or lymphatic-vascular invasion.
DOI: 10.5281/zenodo.17917687
title: GSE5460 Expression Data

description: Analysis of microdissected invasive lobular and ductal breast carcinomas in relation to normal ductal and lobular cells.

Predictors built from gene expression data accurately predict ER, PR, and HER2 status, and divide tumor grade into high-grade and low-grade clusters; intermediate-grade tumors are not a unique group. In contrast, gene expression data cannot be used to predict tumor size or lymphatic-vascular invasion.
DOI: 10.15468/dl.dcs7cu
title: Occurrence Download

description: A dataset containing 5478 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((9.375972 63.624845, 9.385922 63.671822, 9.314351 63.671822, 9.304477 63.624845, 9.375972 63.624845))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 5478 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050311-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db5fkq
title: Occurrence Download

description: A dataset containing 70332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 24.085278",
 "DecimalLatitude is less than or equal to 29.085278",
 "DecimalLongitude is greater than or equal to 125.0",
 "DecimalLongitude is less than or equal to 130.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 70332 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050296-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17911771
title: Annotated images when searching for intruders on top of the train for Use Case 5

description: Annotated images when searching for intruders on top of the train for Use Case 5
DOI: 10.15468/dl.dk3eqt
title: Occurrence Download

description: A dataset containing 743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((10.524103 63.582794, 10.535334 63.630127, 10.463252 63.630127, 10.452098 63.582794, 10.524103 63.582794))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 743 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050312-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30670778
title: NPG ordered crystal phase molecule dynamics

description: This is a supplementary files for Selective Deuteration of Neopentyl Glycol and its Effect on the Plastic Crystal Transformation (DOI: 10.26434/chemrxiv-2025-w5vfl)
DOI: 10.6084/m9.figshare.30670778.v1
title: NPG ordered crystal phase molecule dynamics

description: This is a supplementary files for Selective Deuteration of Neopentyl Glycol and its Effect on the Plastic Crystal Transformation (DOI: 10.26434/chemrxiv-2025-w5vfl)
DOI: 10.5281/zenodo.17911883
title: Annotated images when searching for intruders on top of the train for Use Case 7

description: Annotated images when searching for intruders on top of the train for Use Case 7
DOI: 10.15468/dl.em2mbh
title: Occurrence Download

description: A dataset containing 200641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Myiarchus tuberculifer)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1951",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to April",
 "Month is less than or equal to July",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 200641 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050297-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17917707
title: GLuc ESmodels
DOI: 10.5281/zenodo.17917708
title: GLuc ESmodels
DOI: 10.5281/zenodo.17911826
title: Annotated images when searching for intruders on top of the train for Use Case 6

description: Annotated images when searching for intruders on top of the train for Use Case 6
DOI: 10.5281/zenodo.17911928
title: Annotated images when searching for intruders on top of the train for Use Case 8

description: Annotated images when searching for intruders on top of the train for Use Case 8
DOI: 10.15468/dl.wnmvty
title: Occurrence Download

description: A dataset containing 2346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((8.685721 63.444004, 8.694520 63.489226, 8.625750 63.489226, 8.617019 63.444004, 8.685721 63.444004))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2346 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050313-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17911975
title: Annotated images when searching for intruders on top of the train for Use Case 9

description: Annotated images when searching for intruders on top of the train for Use Case 9
DOI: 10.15468/dl.ajn5f2
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidosiren paradoxa"
 ]
}

 The dataset's 3 records were derived from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050310-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17912058
title: Annotated images when searching for intruders on top of the train for Use Case 11

description: Annotated images when searching for intruders on top of the train for Use Case 11
DOI: 10.15468/dl.wbs277
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fungal community across a tropical forest disturbance gradient"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050316-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17911996
title: Annotated images when searching for intruders on top of the train for Use Case 10

description: Annotated images when searching for intruders on top of the train for Use Case 10
DOI: 10.15468/dl.8ubhnc
title: Occurrence Download

description: A dataset containing 2428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((13.396642 63.297996, 13.410633 63.344919, 13.339377 63.344919, 13.325460 63.297996, 13.396642 63.297996))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2428 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050317-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17912096
title: Annotated images when searching for intruders on top of the train for Use Case 12

description: Annotated images when searching for intruders on top of the train for Use Case 12
DOI: 10.5281/zenodo.17917717
title: GSE5327 Expression Data

description: Breast cancer relapse free survival and lung metastasis free survival.

Validation of lung metastasis signature (LMS) and its association with risk of developing lung metastasis and with primary tumor size.
DOI: 10.5281/zenodo.17917718
title: GSE5327 Expression Data

description: Breast cancer relapse free survival and lung metastasis free survival.

Validation of lung metastasis signature (LMS) and its association with risk of developing lung metastasis and with primary tumor size.
DOI: 10.5281/zenodo.17912125
title: Annotated images when searching for intruders on top of the train for Use Case 13

description: Annotated images when searching for intruders on top of the train for Use Case 13
DOI: 10.5281/zenodo.17879540
title: S.aureus-SERS-AI

description: Project Overview

This repository contains the Surface-Enhanced Raman Spectroscopy (SERS) dataset and machine learning code used to classify Staphylococcus aureus isolates into MRSA, ERSA, and SSA. The dataset accompanies the manuscript:

“Standardization is the Key to Reliable SERS-Based Machine Learning for Antimicrobial Resistance Classification.

 What This Project Does





Provides a SERS dataset consisting of three CSV files (MRSA, ERSA, SSA), each containing five isolates as separate sheets.




Includes preprocessing, feature selection, and machine learning scripts.




Demonstrates the effect of 12 data partitioning strategies on model performance.




Enables reproducible classification of AMR-related S. aureus isolates.



 Why This Project Is Useful





Offers one of the few public SERS datasets with clearly defined clinical isolates.




Helps researchers evaluate standardization issues in SERS-based machine learning.




Provides ready-to-run ML pipelines for:





Preprocessing spectra




Applying Boruta, LASSO, and PCA




Training RF, SVM, kNN, NNET, and XGB models






Serves as a foundation for benchmarking, clinical AMR studies, or SERS–AI algorithm development.



 Dataset Description

The dataset consists of ~15,000 SERS spectra collected from:





5 MRSA isolates




5 ERSA isolates




5 SSA isolates



Each isolate contributes ~1,000 spectra.

Spectral Range





400–1800 cm⁻¹




818 Raman shift positions




785 nm excitation wavelength




1-second integration time



File Format

Each .csv file contains:





Rows: individual spectra




Columns: Raman intensities for each wavenumber
DOI: 10.15468/dl.pppa49
title: Occurrence Download

description: A dataset containing 81089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diospyros",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 81089 records from 381 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050304-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17912180
title: Annotated images when searching for intruders on top of the train for Use Case 14

description: Annotated images when searching for intruders on top of the train for Use Case 14
DOI: 10.15468/dl.wma4bw
title: Occurrence Download

description: A dataset containing 26360 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bird Ringing Data of the Taita Hills Forests, 1996 to 2016"
 ]
}

 The dataset includes 26360 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050318-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9x4wz2
title: Occurrence Download

description: A dataset containing 7445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((13.104214 63.375919, 13.117969 63.422912, 13.046551 63.422912, 13.032870 63.375919, 13.104214 63.375919))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 7445 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050320-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17912206
title: Annotated images when searching for intruders on top of the train for Use Case 15

description: Annotated images when searching for intruders on top of the train for Use Case 15