cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qccts5
title: Occurrence Download

description: A dataset containing 8 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.basisofrecord = 'PRESERVED_SPECIMEN'
 AND (occurrence.level0gid = 'BRA.13_1' OR occurrence.level1gid = 'BRA.13_1' OR occurrence.level2gid = 'BRA.13_1' OR occurrence.level3gid = 'BRA.13_1')
 AND occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND GBIF_STRINGARRAYCONTAINS(occurrence.classifications['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c'], '4929006', TRUE)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.classificationdetails['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c']['specieskey'] &lt;&gt; '' AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 8 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003237-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.g79cnp5sn
title: Underestimated Neotropical diversity: Integrative taxonomy reveals two unrelated look-alike species in a suboscine bird (Pachyramphus albogriseus)

description: We applied an integrative taxonomic framework to evaluate the systematics
 of the Neotropical Black-and-white Becard, Pachyramphus albogriseus
 Sclater 1857. Combining phylogenomic (ultraconserved elements),
 morphological, and vocalization data, we confirmed that this species is
 polyphyletic; some individuals form a clade sister to P. polychopterus and
 should be afforded species rank as P. salvini Richmond 1899
 (Slender-billed Becard), whereas the remaining subspecies of P.
 albogriseus (Broad-banded Becard) are sister to P. major. We found that P.
 salvini differs from P. albogriseus in song, color of the lores, wing-bar
 width, body size, and bill width. Whereas P. albogriseus occurs in montane
 forest in Costa Rica and Panama (ssp. ornatus) and along the eastern slope
 of the Andes from to N Venezuela to S Peru (ssp. albogriseus), P. salvini
 is found in the lowlands from Pacific Colombia south to NW Peru and in the
 Río Marañón drainage. The latter also occurs, possibly only seasonally,
 along the eastern slope of the Andes, where the two species’ ranges
 approach closely. We treat P. a. guayaquilensis Zimmer 1936 as a junior
 synonym of P. salvini Richmond 1899, and P. a. coronatus Phelps and Phelps
 1953 as a junior synonym of P. a. albogriseus Sclater 1857. This study
 provides a striking example of a major problem for comparative biology:
 underestimated and mischaracterized diversity. We argue that there are
 likely many more cases like this awaiting discovery.
DOI: 10.5061/dryad.xd2547dkw
title: Sexually mediated phenotypic variation within and between sexes as a continuum structured by ecology: The mosaic nature of skeletal variation across body regions in Threespine stickleback (Gasterosteus aculeatus L.)

description: Ecological character displacement between the sexes, and sexual selection,
 integrate into a convergent set of factors that produce sexual variation.
 Ecologically-modulated, sexually mediated variation within and between
 sexes may be a major contributor to the amount of total variation that
 selection can act on in species. Threespine stickleback (Gasterosteus
 aculeatus) display rapid adaptive responses and sexual variation in many
 phenotypic traits. We examined phenotypic variation in the skull, pectoral
 and pelvic girdles of threespine stickleback from two freshwater and two
 coastal marine sites on the Sunshine Coast of British Columbia, Canada,
 using an approach that avoids a priori assumptions about bimodal patterns
 of variation. We quantified shape and size of the cranial, pectoral and
 pelvic regions of sticklebacks in marine and freshwater habitats using 3D
 geometric morphometrics and an index of sexually mediated variation. We
 show that the expression of phenotypic variation is structured in part by
 the effects of both habitat marine vs freshwater and the effects of
 individual sites within each habitat. Relative size exerts variable
 influence, and patterns of phenotypic variation associated with sex vary
 among body regions. This fine-grained quantification of sexually mediated
 variation in the context of habitat difference and different anatomical
 structures indicates a complex relationship between genetically inferred
 sex and environmental factors, demonstrating that the interplay between
 shared genetic background and sexually mediated, ecologically-based
 selective pressures structures the phenotypic expression of complex
 traits.
description: Description of methods used for collection/generation of data:
 Data consist of 3D landmarks digitized from computed tomographic models of
 three spine stickleback skeletons. See accompanying publication for
 details. Methods for processing the data: Data are raw.
 Additional processing steps required for the analysis described in the
 accompanying publication are included in the code provided. The analysis
 uses the tools of geometric morphometrics.
description: Instrument- or software-specific information needed to interpret
 the data: Code was written for use with the following platforms, packages
 and their dependencies: R v.
 4.1.3 RStudio v. 2022.02.1 
 geomorph # v.4.0.3 morphometrics RRPP # v.
 1.2.3 morphometrics ggplot2 # v. 3.3.5
 plotting plyr # v. 1.8.6 data manipulation
 vegan # v. 2.5-7 broken stick calculation
DOI: 10.5061/dryad.p8cz8w9t8
title: Microsatellite data from Mediterranean mussels (Mytilus galloprovincialis) from the eastern coast of the Adriatic Sea

description: Microsatellite data from eighteen populations of Mediterranean Mussels
 from the eastern coast of the Adriatic Sea collected between 9/2015 and
 5/2017. 
description: The file is in standard GenAlEx format (Peakall R, Smouse PE
 (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic
 structure for teaching and research – an update. Bioinformatics, 28,
 2537-2539) except that the microsatellite headers usually in row 3 are in
 row 1 and data usually starting row 4, starts from row 2. There is 1 row
 per individual. The coordinates of the collection sites are in columns R
 and S.
DOI: 10.5061/dryad.hx3ffbghb
title: Data from: Low levels of outdoor recreation alter wildlife behavior

description: Public interest in nature-based recreation is growing, including
 visitation to protected areas. However, the level of recreation in these
 areas that causes detectable changes in wildlife behavior remains unknown,
 and many studies that investigate wildlife responses to humans do so in
 high-visitation areas.  We used camera traps to investigate the
 spatial and temporal responses of brown bears (Ursus arctos), black bears
 (Ursus americanus), moose (Alces alces), and wolves (Canis lupis) to
 experimentally manipulated levels of human activity in Glacier Bay
 National Park, Alaska during summers 2017 and 2018. Human activity was
 restricted at some sites and concentrated at others, and these human
 impact treatments were swapped mid-season. The park has very low on-land
 visitation (~40,000 on-land tourists per year), making it a unique study
 system to investigate wildlife responses to low levels of human
 activity.  Detections did not exceed five per week for any
 species unless human activity was absent (zero photos of humans were
 taken). However, spatial and temporal patterns of wildlife activity in
 relation to human activity were nuanced and species-specific. Moose
 shifted their activity patterns to better align with when people were most
 active. Black bears were more likely to be detected in areas of high human
 activity but used high-use areas less intensely than low-use areas. Wolves
 used areas of high human impact more intensely, but shifted their activity
 to be more strongly nocturnal.  Our results highlight the
 importance of considering both spatial and temporal responses of wildlife
 to human activity. Additionally, and arguably most importantly, we
 detected changes in wildlife behavior in response to humans in a national
 park with relatively low tourism. Although natural processes may dominate
 in protected areas, our results indicate that even low levels of human
 activity can alter wildlife behavior.   Synthesis and
 applications: We demonstrated that nearly any level of human activity in a
 protected area may alter wildlife behavior. However, it is unreasonable to
 expect protected areas to be completely devoid of human activity. Thus,
 management of these areas will need to balance the desires of humans to
 view wildlife with the likely impacts.
DOI: 10.5061/dryad.7sqv9s4vw
title: Size- and environment-driven seedling survival and growth are mediated by leaf functional traits

description: Ecologists usually find that plant demography (e.g., survival and growth)
 changes along with plant size and environmental gradients, which suggests
 the effects of ontogeny-related processes and abiotic filtering. However,
 the role of functional traits underlying the plant size- and
 environment-demography relationships is usually overlooked. By measuring
 the individual-level leaf traits of more than 2700 seedlings in a
 temperate forest, we evaluated how seedling functional traits mediated the
 size- and environment-demography relationships. First, we found leaves
 were larger for taller seedlings, leaf economics traits were more
 conservative in taller seedlings and under high light and low elevation
 conditions. Then, structural equation modeling showed that a higher
 survival probability for taller seedlings was indirectly driven by their
 larger leaf area. Although taller seedlings had lower growth rates, larger
 and more resource-conservative leaves could promote the growth rate of
 these tall seedlings. Environmental variables did not appear to influence
 seedling survival and growth directly but did influence growth indirectly
 by mediating trait variation. Finally, species-specific variation in
 traits along with size and environments was associated with the
 species-specific variation in seedling survival and growth. Our study
 suggests that, not only plant ontogeny- and environment-related ecological
 processes, functional traits are also important intermediary agents
 underlying the usually observed plant size- and environment-demography
 relationships.
DOI: 10.5281/zenodo.18401053
title: Replication package for: "Populism and the Skill-Content of Globalization"

description: Replication Package for "Populism and the Skill-Content of Globalization", by Frédéric Docquier, Stefano Iandolo, Hillel Rapoport, Riccardo Turati, and Gonzague Vannoorenberghe
DOI: 10.5281/zenodo.18401054
title: Replication package for: "Populism and the Skill-Content of Globalization"

description: Replication Package for "Populism and the Skill-Content of Globalization", by Frédéric Docquier, Stefano Iandolo, Hillel Rapoport, Riccardo Turati, and Gonzague Vannoorenberghe
DOI: 10.5061/dryad.98sf7m0mv
title: Supporting Data for Ocean acidification drives global reshuffling of ecological communities

description: The paradigm that climate change will alter global marine biodiversity is
 one of the most widely accepted. Yet, its predictions remain difficult to
 test because laboratory systems are inadequate at incorporating ecological
 complexity, and common biodiversity metrics have varying sensitivity to
 detect change. Here, we test for the prevalence of global responses in
 biodiversity and community-level change to future climate (acidification
 and warming) from studies at volcanic CO2 vents across four major global
 coastal ecosystems and studies in laboratory mesocosms. We detected
 globally replicable patterns of species replacements and community
 reshuffling under ocean acidification in major natural ecosystems, yet
 species diversity and other common biodiversity metrics were often
 insensitive to detect such community change, even under significant
 habitat loss. Where there was a lack of consistent patterns of
 biodiversity change, these were a function of similar numbers of studies
 observing negative vs positive species responses to climate stress.
 Laboratory studies showed weaker sensitivity to detect species
 replacements and community reshuffling in general. We conclude that common
 biodiversity metrics can be insensitive in revealing the anticipated
 effects of climate stress on biodiversity – even under significant
 biogenic habitat loss – and can mask widespread reshuffling of ecological
 communities in a future ocean. Whilst the influence of ocean acidification
 on community restructuring can be less evident than species loss, such
 changes can drive the dynamics of ecosystem stability or their functional
 change. Importantly, species identity matters, representing a substantial
 influence of future oceans.
description: Meta-analysis of published literature - see Materials and methods
 in main document.
description: Microsoft Excel
DOI: 10.5061/dryad.n2z34tn0g
title: Evaluating the suitability of close-kin mark-recapture as a demographic modelling tool for a critically endangered elasmobranch population

description: Estimating the demographic parameters of contemporary populations is
 essential to the success of elasmobranch conservation programmes, and to
 understanding their recent evolutionary history. For benthic elasmobranchs
 such as skates, traditional fisheries-independent approaches are often
 unsuitable as the data may be subject to various sources of bias, whilst
 low recapture rates can render mark-recapture programmes ineffectual.
 Close-kin mark-recapture (CKMR), a novel demographic modelling approach
 based on the genetic identification of close relatives within a sample,
 represents a promising alternative approach as it does not require
 physical recaptures. We evaluated the suitability of CKMR as a demographic
 modelling tool for the critically endangered blue skate (Dipturus batis)
 in the Celtic Sea using samples collected during fisheries-dependent
 trammel-net surveys that ran from 2011 to 2017. We identified three
 full-sibling and 16 half-sibling pairs among 662 skates, which were
 genotyped across 6,291 genome-wide single nucleotide polymorphisms (SNPs),
 15 of which were cross-cohort half-sibling pairs that were included in a
 CKMR model. Despite limitations owing to a lack of validated life-history
 trait parameters for the species, we produced the first estimates of adult
 breeding abundance, population growth rate, and annual adult survival rate
 for D. batis in the Celtic Sea. The results were compared to estimates of
 genetic diversity, effective population size (Ne), and catch per unit
 effort (CPUE) estimates from the trammel-net survey. Although each method
 was characterised by wide uncertainty bounds, together they suggested a
 stable population size across the time-series. Recommendations for the
 implementation of CKMR as a conservation tool for data-limited
 elasmobranchs are discussed. In addition, the spatio-temporal distribution
 of the 19 sibling pairs revealed a pattern of site-fidelity in D. batis,
 and supported field observations suggesting an area of critical habitat
 that could qualify for protection might occur near the Isles of Scilly.
DOI: 10.25338/b8hp9f
title: Organ kinetics measurements

description: Biological rhythms are ubiquitous. They can be generated by circadian
 oscillators, which produce daily rhythms in physiology and behavior, as
 well as by developmental oscillator such as the segmentation clock, which
 produces modular developmental units in a periodic fashion. Here, we show
 that the circadian clock controls the timing of late-stage floret
 development, or anthesis, in domesticated sunflower. In these plants, what
 appears to be a single inflorescence consists of up to thousands of
 individual florets tightly packed onto a capitulum disk. While early
 floret development occurs continuously across capitula to generate iconic
 spiral phyllotaxy, during anthesis floret development occurs in discrete
 ring-like pseudowhorls with up to hundreds of florets undergoing
 simultaneous maturation. We demonstrate circadian regulation of floral
 organ growth and show that the effects of light on this process are
 time-of-day dependent. Disruption of circadian rhythms in floral organ
 development causes loss of pseudowhorl formation. Thus, we show that the
 sunflower circadian clock acts in concert with environmental response
 pathways to tightly synchronize the anthesis of hundreds of florets each
 day, generating spatial patterns on the developing capitulum disk. This
 coordinated mass release of floral rewards at predictable times of day
 likely promotes pollinator visits and plant reproductive success.
description: To
 measure the organs in florets over a time course (Figure 2A; LD|25°C
 (19.5h:4.5h)) entire florets from a single pseudowhorl were dissected from
 the capitulum and photographed. Organs were then measured with Image J for
 each floret.
DOI: 10.25338/b8cw5r
title: Sunflower ovary measurements

description: Biological rhythms are ubiquitous. They can be generated by circadian
 oscillators, which produce daily rhythms in physiology and behavior, as
 well as by developmental oscillator such as the segmentation clock, which
 produces modular developmental units in a periodic fashion. Here, we show
 that the circadian clock controls the timing of late-stage floret
 development, or anthesis, in domesticated sunflower. In these plants, what
 appears to be a single inflorescence consists of up to thousands of
 individual florets tightly packed onto a capitulum disk. While early
 floret development occurs continuously across capitula to generate iconic
 spiral phyllotaxy, during anthesis floret development occurs in discrete
 ring-like pseudowhorls with up to hundreds of florets undergoing
 simultaneous maturation. We demonstrate circadian regulation of floral
 organ growth and show that the effects of light on this process are
 time-of-day dependent. Disruption of circadian rhythms in floral organ
 development causes loss of pseudowhorl formation. Thus, we show that the
 sunflower circadian clock acts in concert with environmental response
 pathways to tightly synchronize the anthesis of hundreds of florets each
 day, generating spatial patterns on the developing capitulum disk. This
 coordinated mass release of floral rewards at predictable times of day
 likely promotes pollinator visits and plant reproductive success.
description: For
 ovary growth measurements, at ZT 2 on after the second day in a given
 growth condition, entire florets, including ovaries, were dissected from
 the capitulum along 4–8 continuous parastichies and photographed. Ovary
 length was then measured with Image J for each floret, consecutively.
 Position 8 always designated the boundary between pseudowhorls.
description: Microsoft Excel
DOI: 10.5061/dryad.1jwstqjz2
title: Sod translocation to restore habitats of the myrmecophilous butterfly Phengaris (Maculinea) teleius on former agricultural fields

description: In Europe, 50-70% of former natural grassland area has been destroyed
 during the past 30 years due to land use changes, losses are expected to
 increase in the future. Restoration is thought to reverse this situation
 by creating suitable abiotic conditions. In this paper, we investigate the
 effects of sod translocation with specific vegetation to facilitate the
 restoration of a former intensive agricultural field into a wet meadow.
 First, starting conditions were optimized including modification of the
 local hydrology, removal of the fertilized topsoil, application of liming,
 and translocation of fresh clippings as a seed source. The second part
 aimed at restoring the habitat for the butterfly species Phengaris
 (Maculinea) teleius, one of the species that was especially affected by
 the loss of wet meadows. This species engages in a complex myrmecophilous
 relationship with one host plant, Sanguisorba officinalis, and one
 obligate host ant, Myrmica scabrinodis. We used sod translocation to
 create islands of habitat to promote host plant and host ant colonization.
 After four years following the restoration, we observed that plants spread
 from the transplanted sods to the surroundings. The vegetation composition
 and structure of the transplanted sods attracted colonization of Myrmica
 ants into the restored areas. Following the increase in vegetation cover
 and height, Myrmica ant colonies further spread into the restored areas.
 Therefore, sod translocations can be considered an effective restoration
 method following topsoil removal in the process of restoring wet meadows
 to provide a starting point for ant colonization and plant dispersion.
 With these findings, this paper contributes to the evidence-based
 restoration of wet meadows on former agricultural fields, including
 complex interactions between invertebrates and their required ecological
 relationships. 
description: The file provided in csv format, therefore can be opened with a
 common excel program, Notepad or included on frequent use data analysis
 program.
DOI: 10.15468/dl.upvzqf
title: Occurrence Download

description: A dataset containing 6089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anoplolepis gracilipes",
 "Year 1000-2025"
 ]
}

 The dataset includes 6089 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003254-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2n8r9
title: Occurrence Download

description: A dataset containing 955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nebela",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 955 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003255-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.