cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3618617_d4
title: MOESM3 of Prioritization of anti-malarial hits from nature: chemo-informatic profiling of natural products with in vitro antiplasmodial activities and currently registered anti-malarial drugs

description: Additional file 3. Summary statistics of selected molecular descriptors and physicochemical properties.
DOI: 10.6084/m9.figshare.c.3618635_d1
title: Additional file 1: Table S1. of The RESPITE trial: remifentanil intravenously administered patient-controlled analgesia (PCA) versus pethidine intramuscular injection for pain relief in labour: study protocol for a randomised controlled trial

description: Previous studies of remifentanil for analgesia in labour [20, 21, 23, 28]. (XLS 27Â kb)
DOI: 10.15468/dl.e7gk5r
title: Occurrence Download

description: A dataset containing 38887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Punica granatum L."
 ]
}

 The dataset includes 38887 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034119-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619121_d2
title: Additional file 3: Table S1. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: Genome annotation. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3619121_d11
title: Additional file 22: Table S10. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: G. pallida putative DOG effectors. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3619565_d2
title: Additional file 2: of Capture Hi-C identifies a novel causal gene, IL20RA, in the pan-autoimmune genetic susceptibility region 6q23

description: Contains the cis-eQTLs with P valueâ
DOI: 10.6084/m9.figshare.c.3619571_d3
title: Additional file 3: Table S3. of Molecular analysis of pediatric brain tumors identifies microRNAs in pilocytic astrocytomas that target the MAPK and NF-ÎşB pathways

description: Differentially expressed microRNAs in pediatric brain tumors (tumor groups withâ  &gt;â  3 samples). (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3619571_d4
title: Additional file 2: Table S2. of Molecular analysis of pediatric brain tumors identifies microRNAs in pilocytic astrocytomas that target the MAPK and NF-ÎşB pathways

description: Normalized gene expression data. (XLSX 37339 kb)
DOI: 10.6084/m9.figshare.c.3619583_d1
title: MOESM1 of SeqTools: visual tools for manual analysis of sequence alignments

description: Additional file 1. A tarball of the current production release of the SeqTools source code at the time of writing.
DOI: 10.6084/m9.figshare.c.3619565_d4
title: Additional file 5: of Capture Hi-C identifies a novel causal gene, IL20RA, in the pan-autoimmune genetic susceptibility region 6q23

description: Contains the normalised expression values for CD8+ T-cells obtained from NRHV participants. (TXT 26 kb)
DOI: 10.6084/m9.figshare.c.3619571_d5
title: Additional file 8: Figure S2. of Molecular analysis of pediatric brain tumors identifies microRNAs in pilocytic astrocytomas that target the MAPK and NF-κB pathways

description: RT-qPCR confirms (a) up-regulation of CDKN1A and IGFBP7, (b) up-regulation of CDKN2A, IL6 and IL8 and down-regulation of CTCF in pilocytic astrocytomas. Relative expression shown as Log2 fold change compared to normal adult cerebellum and frontal lobe (normalized to TBP). Data represent two technical replicates ± SD. (ZIP 275 kb)
DOI: 10.6084/m9.figshare.c.3619571_d6
title: Additional file 4: Table S4. of Molecular analysis of pediatric brain tumors identifies microRNAs in pilocytic astrocytomas that target the MAPK and NF-ÎşB pathways

description: Differentially expressed genes in pediatric brain tumors (tumor groups withâ  &gt;â  3 samples). (XLSX 852 kb)
DOI: 10.6084/m9.figshare.c.3619625_d2
title: Additional file 2: of Can local staff reliably assess their own programs? A confirmatory test-retest study of Lot Quality Assurance Sampling data collectors in Uganda

description: 0 to 5Â months retest. (XLSX 155Â kb)
DOI: 10.6084/m9.figshare.c.3619625_d3
title: Additional file 1: of Can local staff reliably assess their own programs? A confirmatory test-retest study of Lot Quality Assurance Sampling data collectors in Uganda

description: 0 to 5Â months test. (XLSX 156Â kb)
DOI: 10.6084/m9.figshare.c.3620006_d2
title: Additional file 2: of Recurrent evolution of gut symbiotic bacteria in pentatomid stinkbugs

description: Bacterial 16S rRNA gene sequences of gut symbionts of stinkbugs and free-living bacteria retrieved from the DNA databases and analyzed in this study. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3620045_d1
title: Additional file 1: Table S1. of Regulatory network reconstruction reveals genes with prognostic value for chronic lymphocytic leukemia

description: Total list of genes with statistically significant differences obtained from the meta-analysis. Table S2. Selected regulators (CERS6, TCF7, and MYBL1) and their targets. (XLSX 132Â kb)
DOI: 10.6084/m9.figshare.c.3620375_d2
title: Additional file 1: of Exploring medical student learning in the large group teaching environment: examining current practice to inform curricular development

description: Appendix 1. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3620414_d4
title: Additional file 3: Table S2. of Pathological classification of human iPSC-derived neural stem/progenitor cells towards safety assessment of transplantation therapy for CNS diseases

description: Karyotype analysis results of NSPCs using conventional giemsa staining and G-banding. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.c.3620918_d2
title: Additional file 3: of Systematic analysis of somatic mutations driving cancer: uncovering functional protein regions in disease development

description: iSiMPRe mini-website. The mini-website shows all identified SiMPRes together with the found annotations from various source databases (Pfam, UniProt, ELM, etc.). (ZIP 37 kb)
DOI: 10.6084/m9.figshare.c.3620924_d2
title: Additional file 2: Figure S1. of Insights into the genetic foundation of aggression in Papio and the evolution of two length-polymorphisms in the promoter regions of serotonin-related genes (5-HTTLPR and MAOALPR) in Papionini

description: Complete alignment of 5-HTTLPR in Papionini. Sequences from this study (with GenBank-Accession numbers): papS(PU) = short allele in P. ursinus (KJ494398); papS(PC) = short allele in P. cynocephalus (KJ494399); papS(PA) = short allele in P. anubis (KJ494400); papS(PH) = short allele in P. hamadryas (KJ494401); papL(PH) = long allele in P. hamadryas (KJ494402); papS(PP) = short allele in P. papio (KJ494403); lop = allele from Lophocebus aterrimus (KJ494404); mle = allele from Mandrillus leucophaeus (KJ494405); msp = allele from Mandrillus sphinx (KJ494406); cer = allele from Cercocebus chrysogaster (KJ494407). Sequences described for Macaca spp. originating from other studies: msy = allele M. sylvanus (AY897212.1); mfa = allele in M. fascicularis (EF126284.1); rhL, rhS = long (AF191557.1) and short (Lesch et al. 1997; Wendland et al. 2006) alleles in M. mulatta; mmzL and mmzS = long (HM114278.1) and short (HM114279.1) alleles in M. munzala; mti = allele in M. thibetana (AY897213.1); mraL and mraS = long (HM114280.1) and short (HM114281.1) alleles in M. radiata; msi = allele in M. silenus (HM114282.1). (RTF 919 kb)
DOI: 10.6084/m9.figshare.c.3620945_d1
title: Additional file 3: of Quantitative proteomics signature profiling based on network contextualization

description: Renal cancer dataset (RC). (TXT 485 kb)
DOI: 10.6084/m9.figshare.c.3620972_d4
title: Additional file 3: of Mitochondrial and oxidative stress genes are differentially expressed in neutrophils of sJIA patients treated with tocilizumab: a pilot microarray study

description: File contains the significant IPA canonical pathways obtained in PBMC from sJIA patients successfully treated with tocilizumab. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3620984_d2
title: MOESM1 of Social networks help to infer causality in the tumor microenvironment

description: Additional file 1: Table S1. xlsx. Networks.
DOI: 10.6084/m9.figshare.c.3621464_d1
title: Additional file 3: of Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

description: Supplementary datasets S5–S7. (XLS 20553 kb)
DOI: 10.6084/m9.figshare.c.3621443_d6
title: Additional file 4: Table S3. of Computational prediction and experimental validation of novel Hedgehog-responsive enhancers linked to genes of the Hedgehog pathway

description: GLIFLAG dataset kmer-SVM scores. kmer-SVM scores for LDwGBM and NPwGBM datasets. (XLSX 20714 kb)
DOI: 10.6084/m9.figshare.c.3621464_d2
title: Additional file 4: of Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

description: Supplementary datasets S8–S11. (XLS 395 kb)
DOI: 10.6084/m9.figshare.c.3621464_d3
title: Additional file 2: of Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

description: Supplementary datasets S1–S4. (XLS 125 kb)
DOI: 10.6084/m9.figshare.c.3621443_d8
title: Additional file 2: Table S2. of Computational prediction and experimental validation of novel Hedgehog-responsive enhancers linked to genes of the Hedgehog pathway

description: Peak coordinates that overlap between all four GLIFLAG datasets. The 26 regions that have shared peaks across all GLIFLAG datasets. Peaks are annotated to nearest genes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3621464_d4
title: Additional file 5: of Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

description: Supplementary datasets S12–S24. (XLS 2190 kb)
DOI: 10.6084/m9.figshare.c.3621530_d2
title: Additional file 1: Table S1. of Comprehensive transcriptional landscape of aging mouse liver

description: Sequencing and alignment metrics for each young and old liver sample. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3622079_d1
title: Additional file 1: of Long-term outcomes in radically treated synchronous vs. metachronous oligometastatic non-small-cell lung cancer

description: Raw_data of patients’ characteristics and survival. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3622073_d3
title: Additional file 3: of Gene and transposable element methylation in great tit (Parus major) brain and blood

description: Full GO-enrichment analysis for genes associated with differentially methylated CGIs: Tables S1 to S4. (XLSX 130Â kb)
DOI: 10.6084/m9.figshare.c.3622082_d2
title: Additional file 3: Table S3. of Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data

description: Statistics of k-mer counting. Total number of k-mers in each sample, total number of valid k-mers in each sample (k-mers shared by at least two samples) and the percentage of valid k-mers in each sample. 11, 15, 17, 21 and 31-mers are shown as well as the 21-mer dataset downsampled to 2Â % of its original size and 21-mer dataset with 34 extra samples. (XLS 104Â kb)
DOI: 10.6084/m9.figshare.c.3622085_d1
title: Additional file 1: of Morphological changes in the meibomian glands of patients with phlyctenular keratitis: a multicenter cross-sectional study

description: Summary of 13 patients with phlyctenular keratitis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3622082_d3
title: Additional file 7: Table S7. of Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data

description: 1-nearest-neighbour accuracy results for all k-mer sizes, distance measures and programs. CNIDARIA is tested against all k-mer sizes. REFERENCEFREE is tested using 21-mers. Cnidaria 21 2Â % is the dataset containing only 2Â % of the data. (XLS 91Â kb)
DOI: 10.6084/m9.figshare.c.3622088_d2
title: Additional file 1: Table S1. of Genome-wide recruitment profiling of transcription factor Crz1 in response to high pH stress

description: Intergenic regions recruiting Crz1 in response to alkaline pH. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3622088_d3
title: Additional file 2: Table S2. of Genome-wide recruitment profiling of transcription factor Crz1 in response to high pH stress

description: Functional analysis of divergent promoters recruiting Crz1. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3622082_d4
title: Additional file 17: Table S8. of Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data

description: REFERENCEFREE datasets and statistics. Datasets used in the REFERENCEFREE analysis with the respective number of sequences, number of k-mers, number of valid k-mers (present in at least two samples) and percentage of k-mers considered valid for each dataset. On average, 0.016 ± 0.023 % of the data is used. (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3622136_d1
title: Additional file 4: of Increased alternate splicing of Htr2c in a mouse model for Prader-Willi syndrome leads disruption of 5HT2C receptor mediated appetite

description: WAY 0 v 3mg/kg ARC cFos. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3622082_d9
title: Additional file 4: Table S4. of Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data

description: Matrix containing pairwise Jaccard distance between samples. The diagonal is blanked but contains zeroes, meaning identity; 11, 15, 17, 21 and 31-mers are shown, as well as the 21-mer dataset downsampled to 2Â % of its original size and 21-mer dataset with 34 extra samples. (XLS 2617Â kb)
DOI: 10.6084/m9.figshare.c.3622532_d2
title: Additional file 1: of Genomic determination of minimum multi-locus sequence typing schemas to represent the genomic phylogeny of Mycoplasma hominis

description: FASTA sequence for all pan genomic alleles identified in this study. (ZIP 1488 kb)
DOI: 10.6084/m9.figshare.c.3622544_d1
title: Additional file 1: Table S1. of Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production

description: Table with details of C. fetus SNPs and genes, specific for clades and bovine abortion strains. (XLSX 4167 kb)
DOI: 10.6084/m9.figshare.c.3622553_d1
title: Additional file 2 of Non-excitable fluorescent protein orthologs found in ctenophores

description: Unaligned proteins from ctenophores used to generate Figure 3. (TXT 19.5 kb)
DOI: 10.6084/m9.figshare.c.3622553_d2
title: Additional file 1 of Non-excitable fluorescent protein orthologs found in ctenophores

description: Fasta format of the alignment of all FPs and FPLs, for any alignment viewer such as SeaView. (TXT 34.4 kb)
DOI: 10.6084/m9.figshare.c.3622553_d3
title: Additional file 3 of Non-excitable fluorescent protein orthologs found in ctenophores

description: Newick format tree used for Figure 3, containing all bootstraps. (TXT 4.90 kb)
DOI: 10.6084/m9.figshare.c.3622577_d1
title: Additional file 1: Table S1. of Heterogeneous response and progression patterns reveal phenotypic heterogeneity of tyrosine kinase inhibitor response in metastatic renal cell carcinoma

description: Patient details and lesion measurements: lesion measurement for all scans included in analysis. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3622601_d2
title: Additional file 1: of The elimination half-life of crystalloid fluid is shorter in female than in male volunteers: a retrospective population kinetic analysis

description: The Excel file with all original data. (XLS 241 kb)
DOI: 10.6084/m9.figshare.c.3623066_d1
title: Additional file 2: of A practical approach to detect ancestral haplotypes in livestock populations

description: Five most common ancestral haplotypes per breed/population in Fleckvieh, Simmental and Brown-Swiss. Information presented for each haplotype (Hap) pertain to chromosome (Chr), genomic coordinates of the haplotype (starting SNP and ending SNP base pair positions), frequency (as provided by AlphaPhase), relative frequency to other haplotypes (frequency of the haplotype divided by the sum of the frequencies of all haplotypes detected in the cluster for the total population), genes of interest (closer than 0.3Â Mb of the haplotype) and closest gene with its coordinates. Coordinates are given according to the Genome assembly UMD3.1. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3623066_d2
title: Additional file 1: of A practical approach to detect ancestral haplotypes in livestock populations

description: QC summary performed for real datasets. As the Spanish breeds dataset was provided by other study, no information can be found on the original number of animals. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3623540_d1
title: Additional file 1: Table S1. of DNA-based culture-independent analysis detects the presence of group a streptococcus in throat samples from healthy adults in Japan

description: Samples collected from healthy adults. Table S2. GAS and other streptococcal isolates used for checking the specificities of all the primers used in this study. Table S3. The PCR conditions used for the culture-dependent and culture-independent studies. Table S4. The emm types detected in the samples, as determined by culture-independent and culture-dependent methods (XLS 48Â kb)
DOI: 10.6084/m9.figshare.c.3624068_d2
title: Additional file 1: Table S5. of Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

description: List of RT-qPCR primers used in this study. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.c.3624068_d5
title: Additional file 8: Table S4. of Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

description: LincRNAs targeted by potato miRNAs. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3624068_d6
title: Additional file 7: Table S3. of Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

description: Differentially expressed lincRNA transcripts. (XLSX 231Â kb)
DOI: 10.6084/m9.figshare.c.3624068_d7
title: Additional file 3: Table S1. of Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

description: List of the identified 1113 lincRNA candidates. (XLS 166Â kb)
DOI: 10.6084/m9.figshare.c.3624557_d1
title: Additional file 2: Table S1. of Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini

description: Complete functional annotation and expression data for P. westermani transcripts. (XLSX 6726Â kb)
DOI: 10.6084/m9.figshare.c.3624557_d2
title: Additional file 3: Table S2. of Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini

description: Complete functional annotation and expression data for P. skrjabini transcripts. (XLSX 7927Â kb)
DOI: 10.6084/m9.figshare.c.3624557_d3
title: Additional file 4: Table S3. of Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini

description: KEGG module representation and completeness for P. westermani and P. skrjabini. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.c.3624569_d1
title: Additional file 2; of Aiming for a representative sample: Simulating random versus purposive strategies for hospital selection

description: Comparison of prediction errors for the five sampling strategies, for n = 6 (n = 2 per hospital type). File legend: LARG = largest hospitals, MAXVAR = maximum variation in number of RBCs, RAND = random, REGVAR = regional variation, 2REG = two regions, RBC = red blood cell products, FFP = fresh frozen plasma products, PLT = platelet products. Output for RAND, REGVAR and 2REG is accompanied by 95 % centiles. Description: These show the prediction errors for n = 6 in a similar table as for n = 12. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3624569_d2
title: Additional file 3: of Aiming for a representative sample: Simulating random versus purposive strategies for hospital selection

description: R code for simulating sampling strategies. Description: R code that creates an exemplary data set and simulates the sampling strategies. (R 26Â kb)
DOI: 10.6084/m9.figshare.c.3624557_d5
title: Additional file 5: Table S4. of Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini

description: Gene Ontology term enrichment among transcript sets of interest from P. westermani and P. skrjabini. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.c.3624569_d3
title: Additional file 1: of Aiming for a representative sample: Simulating random versus purposive strategies for hospital selection

description: Comparison of prediction errors for the five sampling strategies, for n = 18 (n = 6 per hospital type). File legend: LARG = largest hospitals, MAXVAR = maximum variation in number of RBCs, RAND = random, REGVAR = regional variation, 2REG = two regions, RBC = red blood cell products, FFP = fresh frozen plasma products, PLT = platelet products. Output for RAND, REGVAR and 2REG is accompanied by 95 % centiles. Description: These show the prediction errors for n = 18 in a similar table as for n = 12. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3625058_d3
title: Additional file 1: of Tactile feedback for relief of deafferentation pain using virtual reality system: a pilot study

description: Experiment Dates. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3625058_d4
title: Additional file 5: of Tactile feedback for relief of deafferentation pain using virtual reality system: a pilot study

description: Number of reaching actions. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3625085_d1
title: Additional file 1: Dataset S1. of Loss of sensitivity of immunochromatographic test (ICT) for lymphatic filariasis diagnosis in low prevalence settings: consequence in the monitoring and evaluation procedures

description: Database for lymphatic filariasis survey in four health districts in the Far North Region of Cameroon (XLS). NA: non applicable; 0: negative; 1: positive. (XLS 92Â kb)
DOI: 10.6084/m9.figshare.c.3625058_d5
title: Additional file 4: of Tactile feedback for relief of deafferentation pain using virtual reality system: a pilot study

description: Reduction rates of McGill pain sum score. (XLSX 60Â kb)
DOI: 10.6084/m9.figshare.c.3625088_d2
title: Additional file 2: Table S2. of Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass

description: List of switchgrass RGHs that were predicted to contain one or more coiled-coil (CC) domains. Table S2 contains a list of switchgrass RGHs that were predicted to contain one or more coiled-coil domains. It also includes the amino acid start location of that domain(s) and the amino acid end of that domain(s). (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3625094_d1
title: Additional file 3: of Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice (Lepeophtheirus salmonis)

description: ene Ontology, SP-PIR_Keywords, and InterPro. (XLSX 93 kb)
DOI: 10.6084/m9.figshare.c.3625094_d2
title: Additional file 1: of Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice (Lepeophtheirus salmonis)

description: Sex-biased and sex-specific transcripts in individual populations. (XLSX 1955 kb)