cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12301760.v1
title: DNA-based taxonomy and potential suppression of long-established names: the case of <i>Telegonus fulgerator</i> (Lepidoptera: Hesperiidae)

description: DNA data consisting of a short segment of the mitochondrial cytochrome <i>c</i> oxidase subunit 1 gene (COI, or <i>cox1</i>), the standard barcode segment, have previously provided evidence that the butterfly taxon <i>Telegonus fulgerator</i> (Hesperiidae: Eudaminae) is actually comprised of a complex of at least 10 cryptic species presently referred to as the ‘fulgerator complex’. Because the 10 putative species, each with a type specimen and type locality, were diagnosed solely on the basis of nucleotide characters of the COI barcode, and because a barcode is not available from the type of the nominal taxon, the naming of the 10 species has rendered <i>T. fulgerator</i> a <i>nomen dubium</i>. Here we provide an historical background on the nomenclature of <i>T. fulgerator</i>, and propose a neotype in order to stabilize a name that has been in use for almost 250<b> </b>years. We also summarize the few data available on geographic distributions and probable dispersal scenarios of several of the cryptic species of the fulgerator complex based on publicly available barcodes.
DOI: 10.6084/m9.figshare.12301733
title: A Prospective Follow-up Study of the Relationship between C-Reactive Protein and Primary Liver Cancer

description: A Prospective Follow-up Study of the Relationship between C-Reactive Protein and Primary Liver Cancer
DOI: 10.6084/m9.figshare.12301742
title: Burgess-GDPA-RawData.sav

description: Previous research demonstrates that emotions play a critical role in goal pursuit and achievement. However, this research assumes that the explicit emotions that individuals report accurately reflect the implicit affective experiences that underlie the motivation of individuals. In addition, past work assumes that all individuals experience the same pre and post goal-related emotion, despite individual differences in the ability to regulate emotion and behaviour (Kuhl, 1994). The present research challenges these assumptions. Specifically, pre-goal and post-goal states are manipulated through participants’ reflections on their idiographic goals, and both explicit (the Positive and Negative Affect Test (PANAS)) and implicit measures (the Implicit Positive and Negative Affect Test (IPANAT)) of affect were used to examine closely the affective associates of pre-goal and post-goal states.
DOI: 10.6084/m9.figshare.12301742.v1
title: Burgess-GDPA-RawData.sav

description: Previous research demonstrates that emotions play a critical role in goal pursuit and achievement. However, this research assumes that the explicit emotions that individuals report accurately reflect the implicit affective experiences that underlie the motivation of individuals. In addition, past work assumes that all individuals experience the same pre and post goal-related emotion, despite individual differences in the ability to regulate emotion and behaviour (Kuhl, 1994). The present research challenges these assumptions. Specifically, pre-goal and post-goal states are manipulated through participants’ reflections on their idiographic goals, and both explicit (the Positive and Negative Affect Test (PANAS)) and implicit measures (the Implicit Positive and Negative Affect Test (IPANAT)) of affect were used to examine closely the affective associates of pre-goal and post-goal states.
DOI: 10.6084/m9.figshare.12301475
title: COVID-19 publications: Database coverage, citations, readers, tweets, news, Facebook walls, Reddit posts

description: Data associated with the publicationKousha, K., & Thelwall, M. (2020). COVID-19 publications: Database coverage, citations, readers, tweets, news, Facebook walls, Reddit posts. Quantitative Science Studies.<br>
DOI: 10.6084/m9.figshare.12301475.v1
title: COVID-19 publications: Database coverage, citations, readers, tweets, news, Facebook walls, Reddit posts

description: Data associated with the publicationKousha, K., & Thelwall, M. (2020). COVID-19 publications: Database coverage, citations, readers, tweets, news, Facebook walls, Reddit posts. Quantitative Science Studies.<br>
DOI: 10.6084/m9.figshare.12301424
title: Sample and data_glycoalkaloids in potatoes_Consolata Musita.xls

description: This data presents the findings of the analysis of the levels of glycoalkaloids in commercial potato varieties in Nairobi, Kenya.
DOI: 10.6084/m9.figshare.12301427
title: Supplementary Material for: Genomic Profiling of Stage II Colorectal Cancer Identifies Candidate Genes Associated with Recurrence-Free Survival, Tumor Location, and Differentiation Grade

description: <b><i>Background:</i></b>Identification of high-risk stage II colorectal cancer (CRC) patients, potential candidates for adjuvant chemotherapy, is challenging. Current clinical guidelines rely mainly on histopathological markers with relatively weak prognostic value. This motivates further search for prognostic markers. <b><i>Methods:</i></b>This explorative study aimed to identify potential candidate gene mutations to facilitate differentiation between subgroups of patients with CRC stage II. Panel-based massive parallel sequencing was used to genetically characterize tumor tissues from 85 patients radically operated for CRC stage II, of which 12 developed recurrent cancer during follow-up. Genetic data was compared between patients with or without cancer recurrence, between tumors located in colon and in rectum, and for association with tumor differentiation grade. <b><i>Results:</i></b>Genetic variation in <i>ATM</i>, <i>C11ORF65</i> was associated with recurrence-free survival. Previous reports regarding the association between <i>BRAF</i> mutation and a higher age at diagnosis, and tumor location in colon were confirmed. <i>APC</i>, <i>BRAF</i>, or <i>KRAS</i> mutation was associated with tumor differentiation grade. Multiple correspondence analyses revealed no obvious clustering of patients with the studied clinical characteristics, indicating that the genetic signatures observed here were unique for each individual. <b><i>Conclusions:</i></b>Taken together, we have demonstrated the utility of panel-based massive parallel sequencing to explore the pathogenesis of CRC stage II. We have identified promising candidate gene mutations associated with cancer recurrence, tumor location, and differentiation grade in patients with CRC stage II, which merit further investigation.
DOI: 10.6084/m9.figshare.12301424.v1
title: Sample and data_glycoalkaloids in potatoes_Consolata Musita.xls

description: This data presents the findings of the analysis of the levels of glycoalkaloids in commercial potato varieties in Nairobi, Kenya.
DOI: 10.6084/m9.figshare.12301427.v1
title: Supplementary Material for: Genomic Profiling of Stage II Colorectal Cancer Identifies Candidate Genes Associated with Recurrence-Free Survival, Tumor Location, and Differentiation Grade

description: <b><i>Background:</i></b>Identification of high-risk stage II colorectal cancer (CRC) patients, potential candidates for adjuvant chemotherapy, is challenging. Current clinical guidelines rely mainly on histopathological markers with relatively weak prognostic value. This motivates further search for prognostic markers. <b><i>Methods:</i></b>This explorative study aimed to identify potential candidate gene mutations to facilitate differentiation between subgroups of patients with CRC stage II. Panel-based massive parallel sequencing was used to genetically characterize tumor tissues from 85 patients radically operated for CRC stage II, of which 12 developed recurrent cancer during follow-up. Genetic data was compared between patients with or without cancer recurrence, between tumors located in colon and in rectum, and for association with tumor differentiation grade. <b><i>Results:</i></b>Genetic variation in <i>ATM</i>, <i>C11ORF65</i> was associated with recurrence-free survival. Previous reports regarding the association between <i>BRAF</i> mutation and a higher age at diagnosis, and tumor location in colon were confirmed. <i>APC</i>, <i>BRAF</i>, or <i>KRAS</i> mutation was associated with tumor differentiation grade. Multiple correspondence analyses revealed no obvious clustering of patients with the studied clinical characteristics, indicating that the genetic signatures observed here were unique for each individual. <b><i>Conclusions:</i></b>Taken together, we have demonstrated the utility of panel-based massive parallel sequencing to explore the pathogenesis of CRC stage II. We have identified promising candidate gene mutations associated with cancer recurrence, tumor location, and differentiation grade in patients with CRC stage II, which merit further investigation.
DOI: 10.6084/m9.figshare.12301400
title: Tweets dataset on Zika virus

description: Comma Separated Values (CSV) text file containing (compressed) Tweets with mentions about the Zika Virus. Number of rows: 2782022 Environment: =&gt; Debian GNU/Linux 9.9 (stretch) Release 9.9.=&gt; PostgreSQL 9.6.15 on x86_64-pc-linux-gnu. The data was captured from October/2017 until March/2018 and stored on a PostgreSQL table with the following structure: texto: textdata: timestamp without time zonedados: jsonb /* The contents of the tweet */ The CSV file was created from the PostgreSQL table with the commands: zika@zika:~$ psql<br>psql (9.6.15)<br>Digite "help" para ajuda.<br><br>zika=&gt; use tweets<br>zika-&gt; \copy (SELECT * FROM tweets) to '/home/zika/tweets.csv' with csv The CSV file was compressed with the command: zika@zika:~$ tar -cvzf tweets.tgz tweets.csv <br>
DOI: 10.6084/m9.figshare.12301400.v1
title: Tweets dataset on Zika virus

description: Comma Separated Values (CSV) text file containing (compressed) Tweets with mentions about the Zika Virus. Number of rows: 2782022 Environment: =&gt; Debian GNU/Linux 9.9 (stretch) Release 9.9.=&gt; PostgreSQL 9.6.15 on x86_64-pc-linux-gnu. The data was captured from October/2017 until March/2018 and stored on a PostgreSQL table with the following structure: texto: textdata: timestamp without time zonedados: jsonb /* The contents of the tweet */ The CSV file was created from the PostgreSQL table with the commands: zika@zika:~$ psql<br>psql (9.6.15)<br>Digite "help" para ajuda.<br><br>zika=&gt; use tweets<br>zika-&gt; \copy (SELECT * FROM tweets) to '/home/zika/tweets.csv' with csv The CSV file was compressed with the command: zika@zika:~$ tar -cvzf tweets.tgz tweets.csv <br>
DOI: 10.6084/m9.figshare.12301328
title: GPS Rinex files for the manuscript: Change in total electron content during the December 26, 2019 solar eclipse: constraints from GNSS observations and comparison with SAMI3 model results

description: GPS RINEX data set from Indian sub-continent and Southease Asia during the Decemeber 26, 2019 annular solar eclipse and the day before it.
DOI: 10.6084/m9.figshare.12301328.v1
title: GPS Rinex files for the manuscript: Change in total electron content during the December 26, 2019 solar eclipse: constraints from GNSS observations and comparison with SAMI3 model results

description: GPS RINEX data set from Indian sub-continent and Southease Asia during the Decemeber 26, 2019 annular solar eclipse and the day before it.
DOI: 10.6084/m9.figshare.12301229
title: Tomograms of Minjinia turgenensis

description: VOL fil consisting of original tomograms for Minjinia turgenensis
DOI: 10.6084/m9.figshare.12301172
title: Apart but Not Alone: survey 1 questionnaire and data April 2020. Neighbour support and the covid-19 lockdown

description: This is the dataset and questionnaire for a survey of people engaged in supporting their neighbours during the covid-19 lockdown in 2020. The study was based in the Bristol conurbation
DOI: 10.6084/m9.figshare.12301160
title: COAF open access spend raw data

description: Raw data for the report <b>'Wellcome and COAF open access spend 2018/19'</b>
DOI: 10.6084/m9.figshare.12301160.v1
title: COAF open access spend raw data

description: Raw data for the report <b>'Wellcome and COAF open access spend 2018/19'</b>
DOI: 10.6084/m9.figshare.12301172.v3
title: Apart but Not Alone: survey 1 questionnaire and data April 2020. Neighbour support and the covid-19 lockdown

description: This is the dataset and questionnaire for a survey of people engaged in supporting their neighbours during the covid-19 lockdown in 2020. The study was based in the Bristol conurbation
DOI: 10.6084/m9.figshare.12301133
title: Supplementary Material for: Medical and Surgical Management of Hidradenitis Suppurativa: A Review of International Treatment Guidelines and Implementation in General Dermatology Practice

description: <b><i>Background:</i></b> Hidradenitis suppurativa (HS) is a chronic painful skin disease that severely impairs patients’ quality of life. While high-quality trials of HS therapies remain limited, medical knowledge of best treatment practices is rapidly evolving, leading to the recent publication of multiple international treatment guidelines for HS. <b><i>Summary:</i></b> This review compares international HS treatment guidelines, describes evidence for effectiveness of common and emerging HS therapies, and provides guidance for integrating evidence-based HS care into practice. Although over 50 medical and procedural treatments are mentioned across international HS guidelines, only adalimumab and infliximab have grade B/weak recommendation or higher across all major guidelines. This review describes the appropriate patient selection and effectiveness of the most commonly used medical and procedural treatments for HS. It also includes recommendations for counseling, dosing, and duration of medical therapies as well as procedure videos for the practicing dermatologist.
DOI: 10.6084/m9.figshare.12301133.v1
title: Supplementary Material for: Medical and Surgical Management of Hidradenitis Suppurativa: A Review of International Treatment Guidelines and Implementation in General Dermatology Practice

description: <b><i>Background:</i></b> Hidradenitis suppurativa (HS) is a chronic painful skin disease that severely impairs patients’ quality of life. While high-quality trials of HS therapies remain limited, medical knowledge of best treatment practices is rapidly evolving, leading to the recent publication of multiple international treatment guidelines for HS. <b><i>Summary:</i></b> This review compares international HS treatment guidelines, describes evidence for effectiveness of common and emerging HS therapies, and provides guidance for integrating evidence-based HS care into practice. Although over 50 medical and procedural treatments are mentioned across international HS guidelines, only adalimumab and infliximab have grade B/weak recommendation or higher across all major guidelines. This review describes the appropriate patient selection and effectiveness of the most commonly used medical and procedural treatments for HS. It also includes recommendations for counseling, dosing, and duration of medical therapies as well as procedure videos for the practicing dermatologist.
DOI: 10.6084/m9.figshare.12301100
title: Archive of RepeatExplorer output from Allium cepa dataset Re_upload

description: The output of RepeatExplorer archive for following paper:Fu, J., Zhang, H., Guo, F. et al. Identification and characterization of abundant repetitive sequences in Allium cepa. Sci Rep 9, 16756 (2019). https://doi.org/10.1038/s41598-019-52995-9<br>Due to the unknow reason, if you could not download the second part of data in the previous link (https://figshare.com/s/b5adf97d66269b0369bc), please try this link.<br>Note: 1. you should download both part from the this link, as the size of files are different from each other.2. please use the command below to combine two files:cat Allium_cepa_reclustering.zip..aa Allium_cepa_reclustering.zip..ab &gt; Allium_cepa_reclustering.zip<br>
DOI: 10.6084/m9.figshare.12301118
title: 16S rRNA fastq

description: cross sectional study of the cecal microbiota from 187 broilers by performing 16S rRNA sequencing (regions V3-4)
DOI: 10.6084/m9.figshare.12301118.v1
title: 16S rRNA fastq

description: cross sectional study of the cecal microbiota from 187 broilers by performing 16S rRNA sequencing (regions V3-4)
DOI: 10.6084/m9.figshare.12301100.v1
title: Archive of RepeatExplorer output from Allium cepa dataset Re_upload

description: The output of RepeatExplorer archive for following paper:Fu, J., Zhang, H., Guo, F. et al. Identification and characterization of abundant repetitive sequences in Allium cepa. Sci Rep 9, 16756 (2019). https://doi.org/10.1038/s41598-019-52995-9<br>Due to the unknow reason, if you could not download the second part of data in the previous link (https://figshare.com/s/b5adf97d66269b0369bc), please try this link.<br>Note: 1. you should download both part from the this link, as the size of files are different from each other.2. please use the command below to combine two files:cat Allium_cepa_reclustering.zip..aa Allium_cepa_reclustering.zip..ab &gt; Allium_cepa_reclustering.zip<br>
DOI: 10.6084/m9.figshare.12301088
title: (DATASET, CLEAN) Pathways in the Drug Development for Alzheimer’s Disease (1906-2016): A Bibliometric Study

description: ‘Full record and cited references’ data from Web of Science of all publications after the extensive cleaning procedure and used in the analyses. The publications are listed in the order of belonging to the fundamental-preclinical-clinical domain.
DOI: 10.6084/m9.figshare.12301055
title: Supplementary Material for: Endoscopic Transversal Incision and Longitudinal Septostomy (TILS): An Updated Technique for Treating Esophageal Diverticulum

description: An esophageal diverticulum is a protruding pouch in a weak portion of the esophageal lining. Previously, our team had reported an endoscopic tunneling technique (submucosal tunneling endoscopic septum division) for diverticulum treatment. However, it does not perform well for the diverticulum located in the upper esophagus, where most diverticula are located. Herein, we report a new endoscopic technique, called endoscopic transversal incision and longitudinal septostomy (TILS). TILS provides both larger operational spaces and complete septostomy and can be performed on most types of diverticula, including Zenker’s diverticulum.
DOI: 10.6084/m9.figshare.12300995
title: Magnolia phylogeny based on nuclear and plastid evidences

description: This directory included nuclear and plastid data used for Magnolia phylogeny.
DOI: 10.6084/m9.figshare.12301046
title: Supplementary Material for: Liver Embolisation for Patients with Neuroendocrine Neoplasms: Systematic Review

description: <b><i>Background:</i></b> Liver embolisation is one of the treatment options available for patients diagnosed with neuro-endocrine neoplasms (NEN). It is still uncertain whether the benefits of the various types of embolisation treatments truly outweigh the complications in NENs. This systematic review assesses the available data relating to liver embolisation in patients with NENs. <b><i>Methods:</i></b> Eligible studies (identified using MEDLINE-PubMed) were those reporting data on NEN patients who had undergone any type of liver embolisation. The primary end points were best radiological response and symptomatic response; secondary end-points included progression-free survival (PFS), overall survival (OS) and toxicity. <b><i>Results:</i></b> Of 598 studies screened, 101 were eligible: 16 were prospective (15.8%). The eligible studies included a total of 5,545 NEN patients, with a median of 39 patients per study (range 5–214). Pooled rate of partial response was 36.6% (38.9% achieved stable disease) and 55.2% of patients had a symptomatic response to therapy when pooled data were analysed. The median PFS and OS were 18.4 months (95% CI 15.5–21.2) and 40.7 months (95% CI 35.2–46.2) respectively. The most common toxicities were found to be abdominal pain (48.8%) and nausea (48.1%). Outcome did not significantly vary depending on the type of embolisation performed. <b><i>Conclusion:</i></b> Liver embolisation provides adequate symptom relief for patients with carcinoid syndrome and is also able to reach partial response in a significant proportion of patients and a reasonable PFS. Quality of studies was limited, highlighting the need of further prospective studies to confirm the most suitable form of liver embolisation in NENs.
DOI: 10.6084/m9.figshare.12301046.v1
title: Supplementary Material for: Liver Embolisation for Patients with Neuroendocrine Neoplasms: Systematic Review

description: <b><i>Background:</i></b> Liver embolisation is one of the treatment options available for patients diagnosed with neuro-endocrine neoplasms (NEN). It is still uncertain whether the benefits of the various types of embolisation treatments truly outweigh the complications in NENs. This systematic review assesses the available data relating to liver embolisation in patients with NENs. <b><i>Methods:</i></b> Eligible studies (identified using MEDLINE-PubMed) were those reporting data on NEN patients who had undergone any type of liver embolisation. The primary end points were best radiological response and symptomatic response; secondary end-points included progression-free survival (PFS), overall survival (OS) and toxicity. <b><i>Results:</i></b> Of 598 studies screened, 101 were eligible: 16 were prospective (15.8%). The eligible studies included a total of 5,545 NEN patients, with a median of 39 patients per study (range 5–214). Pooled rate of partial response was 36.6% (38.9% achieved stable disease) and 55.2% of patients had a symptomatic response to therapy when pooled data were analysed. The median PFS and OS were 18.4 months (95% CI 15.5–21.2) and 40.7 months (95% CI 35.2–46.2) respectively. The most common toxicities were found to be abdominal pain (48.8%) and nausea (48.1%). Outcome did not significantly vary depending on the type of embolisation performed. <b><i>Conclusion:</i></b> Liver embolisation provides adequate symptom relief for patients with carcinoid syndrome and is also able to reach partial response in a significant proportion of patients and a reasonable PFS. Quality of studies was limited, highlighting the need of further prospective studies to confirm the most suitable form of liver embolisation in NENs.
DOI: 10.6084/m9.figshare.12301055.v1
title: Supplementary Material for: Endoscopic Transversal Incision and Longitudinal Septostomy (TILS): An Updated Technique for Treating Esophageal Diverticulum

description: An esophageal diverticulum is a protruding pouch in a weak portion of the esophageal lining. Previously, our team had reported an endoscopic tunneling technique (submucosal tunneling endoscopic septum division) for diverticulum treatment. However, it does not perform well for the diverticulum located in the upper esophagus, where most diverticula are located. Herein, we report a new endoscopic technique, called endoscopic transversal incision and longitudinal septostomy (TILS). TILS provides both larger operational spaces and complete septostomy and can be performed on most types of diverticula, including Zenker’s diverticulum.
DOI: 10.6084/m9.figshare.12300995.v1
title: Magnolia phylogeny based on nuclear and plastid evidences

description: This directory included nuclear and plastid data used for Magnolia phylogeny.
DOI: 10.6084/m9.figshare.12300896
title: SARSCoV2s level 1 and level 2 human spreaders at high threshold

description: It contains interactions between SARSCoV2s level 1 and level 2 human spreaders at high threshold.
DOI: 10.6084/m9.figshare.12300899
title: SARSCoV2s level 1 and level 2 human spreaders at low threshold

description: It contains interactions between SARSCoV2s level 1 and level 2 human spreaders at low threshold<br>