cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7714022
title: Personality in chronic headaches: A systematic review with meta-analysis

description: Dataset refers to a systematic review on the personality traits associated to Chronic Headache (CH) compared to healthy controls and to a quantitative meta-analysis with the studies using the same instrument to assess personality traits. Thirteen studies were included in the systematic review but only three studies were deeply explored in a meta-analysis since the only ones using a common instrument to assess personality dimensions. According to the results of the meta-analysis, different subtypes of CH patients scored higher than healthy controls on Hypochondriasis and Hysteria scales highlighting that these personality traits are common across CH categories. The systematic review showed higher levels of depressive and anxious personality dimensions and pain catastrophizing in CH compared to healthy controls. Moreover, frequent-chronic forms and Medication Overuse Headache were the most symptomatic and frail categories showing higher levels of dysfunctional personality traits and psychopathological symptoms
DOI: 10.6084/m9.figshare.14720961.v1
title: Fast and Separable Estimation in High-dimensional Tensor Gaussian Graphical Models

description: In the tensor data analysis, the Kronecker covariance structure plays a vital role in unsupervised learning and regression. Under the Kronecker covariance model assumption, the covariance of an <i>M</i>-way tensor is parameterized as the Kronecker product of <i>M</i> individual covariance matrices. With normally distributed tensors, the key to high-dimensional tensor graphical models becomes the sparse estimation of the <i>M</i> inverse covariance matrices. Unable to maximize the tensor normal likelihood analytically, existing approaches often require cyclic updates of the <i>M</i> sparse matrices. For the high-dimensional tensor graphical models, each update step solves a regularized inverse covariance estimation problem that is computationally nontrivial. This computational challenge motivates our study of whether a non-cyclic approach can be as good as the cyclic algorithms in theory and practice. To handle the potentially very high-dimensional and high-order tensors, we propose a separable and parallel estimation scheme. We show that the new estimator achieves the same minimax optimal convergence rate as the cyclic estimation approaches. Numerically, the new estimator is much faster and often more accurate than the cyclic approach. Moreover, another advantage of the separable estimation scheme is its flexibility in modeling, where we can easily incorporate user-specified or specially structured covariances on any modes of the tensor. We demonstrate the efficiency of the proposed method through both simulations and a neuroimaging application. Supplementary materials are available online.
DOI: 10.6084/m9.figshare.10006088
title: MOESM3 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 3: Table S4. Pathway enrichment analysis of differentially expressed genes in paired comparison of ER+ Brain METs versus matched PBTs.
DOI: 10.6084/m9.figshare.10006088.v1
title: MOESM3 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 3: Table S4. Pathway enrichment analysis of differentially expressed genes in paired comparison of ER+ Brain METs versus matched PBTs.
DOI: 10.6084/m9.figshare.14720961.v2
title: Fast and Separable Estimation in High-Dimensional Tensor Gaussian Graphical Models

description: In the tensor data analysis, the Kronecker covariance structure plays a vital role in unsupervised learning and regression. Under the Kronecker covariance model assumption, the covariance of an <i>M</i>-way tensor is parameterized as the Kronecker product of <i>M</i> individual covariance matrices. With normally distributed tensors, the key to high-dimensional tensor graphical models becomes the sparse estimation of the <i>M</i> inverse covariance matrices. Unable to maximize the tensor normal likelihood analytically, existing approaches often require cyclic updates of the <i>M</i> sparse matrices. For the high-dimensional tensor graphical models, each update step solves a regularized inverse covariance estimation problem that is computationally nontrivial. This computational challenge motivates our study of whether a noncyclic approach can be as good as the cyclic algorithms in theory and practice. To handle the potentially very high-dimensional and high-order tensors, we propose a separable and parallel estimation scheme. We show that the new estimator achieves the same minimax optimal convergence rate as the cyclic estimation approaches. Numerically, the new estimator is much faster and often more accurate than the cyclic approach. Moreover, another advantage of the separable estimation scheme is its flexibility in modeling, where we can easily incorporate user-specified or specially structured covariances on any modes of the tensor. We demonstrate the efficiency of the proposed method through both simulations and a neuroimaging application. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.16815705
title: Additional file 3 of Comprehensive mapping of binding hot spots of SARS-CoV-2 RBD-specific neutralizing antibodies for tracking immune escape variants

description: Additional file 3: Table S2. Sequence analysis of RBD-specific mAbs.
DOI: 10.6084/m9.figshare.10006094
title: MOESM4 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 4: Table S5. Pathway enrichment analysis of differentially expressed genes in paired comparison of ER- Brain METs versus matched PBTs.
DOI: 10.6084/m9.figshare.10006094.v1
title: MOESM4 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 4: Table S5. Pathway enrichment analysis of differentially expressed genes in paired comparison of ER- Brain METs versus matched PBTs.
DOI: 10.6084/m9.figshare.14721028.v1
title: Circular RNA circ_0003028 contributes to tumorigenesis by regulating GOT2 via miR-1298-5p in non-small cell lung cancer

description: Non-small cell lung cancer (NSCLC) is a common malignant tumor, with high morbidity and mortality. Circular RNA (circRNA) circ_0003028 was reported to be upregulated in NSCLC. This study is designed to explore the role and mechanism of circ_0003028 on NSCLC progression. In this work, circ_0003028, microRNA-1298-5p (miR-1298-5p), and glutamic oxaloacetic transaminase 2 (GOT2) level were detected by real-time quantitative polymerase chain reaction (RT-qPCR). The localization of circ_0003028 was analyzed by subcellular fractionation assay. Cell proliferation, colony number, cell cycle progression, apoptosis, migration, invasion, and angiogenesis were measured by Cell Counting Kit-8 (CCK-8), colony formation, flow cytometry, transwell, and tube formation assays. Protein levels of Beclin1, light chain 3 (LC3)-II/LC3-I, GOT2, proliferating cell nuclear antigen (PCNA) were examined by western blot assay. The binding relationship between miR-1298-5p and circ_0003028 or GOT2 was predicted by circular RNA Interactome or starbase and then verified by dual-luciferase reporter, RNA Immunoprecipitation (RIP), and RNA pull-down assays. The biological role of circ_0003028 on NSCLC tumor growth was examined by the xenograft tumor model <i>in vivo</i>. We reported that circ_0003028 and GOT2 were upregulated, and miR-1298-5p was decreased in NSCLC tissues and cells. Moreover, circ_0003028 knockdown curbed cell proliferative ability, migration, invasion, angiogenesis, and facilitate apoptosis and autophagy in NSCLC cells <i>in vitro</i>. Mechanical analysis discovered that circ_0003028 regulated GOT2 expression by sponging miR-1298-5p. Circ_0003028 silencing hindered the cell growth of NSCLC <i>in vivo</i>. Taken together, circ_0003028 knockdown could suppress NSCLC progression partly by regulating the miR-1298-5p/GOT2 axis, providing an underlying therapeutic target for NSCLC.
DOI: 10.6084/m9.figshare.23633969
title: Complete mitochondrial genome of <i>Laeocathaica amdoana</i> Möllendorff, 1899 and phylogenetic analysis of Camaenidae (Gastropoda: Stylommatophora: Helicoidea)

description: The first complete mitochondrial genome of the dart sac-bearing camaenid <i>Laeocathaica</i> Möllendorff, 1899 was sequenced and analyzed in this study. The whole mitogenome of <i>Laeocathaica amdoana</i> Möllendorff, 1899 was 14,660 bp in length and its nucleotide composition showed high AT-content of 67.45%. It had 37 genes, including 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes. The phylogeny yielded by both Bayesian inference and maximum-likelihood method suggested that <i>Laeocathaica</i> was closely related to the other dart sac-bearing camaenids with known complete mitochondrial genome. These genetic data are expected to provide fundamental resources for further genetic studies on the camaenids.
DOI: 10.6084/m9.figshare.23633969.v1
title: Complete mitochondrial genome of <i>Laeocathaica amdoana</i> Möllendorff, 1899 and phylogenetic analysis of Camaenidae (Gastropoda: Stylommatophora: Helicoidea)

description: The first complete mitochondrial genome of the dart sac-bearing camaenid <i>Laeocathaica</i> Möllendorff, 1899 was sequenced and analyzed in this study. The whole mitogenome of <i>Laeocathaica amdoana</i> Möllendorff, 1899 was 14,660 bp in length and its nucleotide composition showed high AT-content of 67.45%. It had 37 genes, including 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes. The phylogeny yielded by both Bayesian inference and maximum-likelihood method suggested that <i>Laeocathaica</i> was closely related to the other dart sac-bearing camaenids with known complete mitochondrial genome. These genetic data are expected to provide fundamental resources for further genetic studies on the camaenids.
DOI: 10.6084/m9.figshare.10006103
title: MOESM5 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 5: Table S6. Pathway enrichment analysis of differentially expressed genes in comparison of ER+ ovarian METs versus matched PBTs.
DOI: 10.6084/m9.figshare.10006103.v1
title: MOESM5 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 5: Table S6. Pathway enrichment analysis of differentially expressed genes in comparison of ER+ ovarian METs versus matched PBTs.
DOI: 10.6084/m9.figshare.16815558.v1
title: Additional file 4 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation

description: Additional file 4: Table S3 Characteristics of common CPE enriched protein in 3 cell lines (THP-1, K562, 293T)
DOI: 10.6084/m9.figshare.14721028
title: Circular RNA circ_0003028 contributes to tumorigenesis by regulating GOT2 via miR-1298-5p in non-small cell lung cancer

description: Non-small cell lung cancer (NSCLC) is a common malignant tumor, with high morbidity and mortality. Circular RNA (circRNA) circ_0003028 was reported to be upregulated in NSCLC. This study is designed to explore the role and mechanism of circ_0003028 on NSCLC progression. In this work, circ_0003028, microRNA-1298-5p (miR-1298-5p), and glutamic oxaloacetic transaminase 2 (GOT2) level were detected by real-time quantitative polymerase chain reaction (RT-qPCR). The localization of circ_0003028 was analyzed by subcellular fractionation assay. Cell proliferation, colony number, cell cycle progression, apoptosis, migration, invasion, and angiogenesis were measured by Cell Counting Kit-8 (CCK-8), colony formation, flow cytometry, transwell, and tube formation assays. Protein levels of Beclin1, light chain 3 (LC3)-II/LC3-I, GOT2, proliferating cell nuclear antigen (PCNA) were examined by western blot assay. The binding relationship between miR-1298-5p and circ_0003028 or GOT2 was predicted by circular RNA Interactome or starbase and then verified by dual-luciferase reporter, RNA Immunoprecipitation (RIP), and RNA pull-down assays. The biological role of circ_0003028 on NSCLC tumor growth was examined by the xenograft tumor model <i>in vivo</i>. We reported that circ_0003028 and GOT2 were upregulated, and miR-1298-5p was decreased in NSCLC tissues and cells. Moreover, circ_0003028 knockdown curbed cell proliferative ability, migration, invasion, angiogenesis, and facilitate apoptosis and autophagy in NSCLC cells <i>in vitro</i>. Mechanical analysis discovered that circ_0003028 regulated GOT2 expression by sponging miR-1298-5p. Circ_0003028 silencing hindered the cell growth of NSCLC <i>in vivo</i>. Taken together, circ_0003028 knockdown could suppress NSCLC progression partly by regulating the miR-1298-5p/GOT2 axis, providing an underlying therapeutic target for NSCLC.
DOI: 10.5281/zenodo.10624826
title: craterocephalus_fluviatilis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10624827
title: craterocephalus_fluviatilis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10623931
title: NeuroMDAVIS: Visualization of single-cell multi-omics data under deep learning Framework

description: Datasets have been used in the work, entitled "NeuroMDAVIS: Visualization of single-cell multi-omics data under deep learning Framework", can be found in this repository.
DOI: 10.5281/zenodo.10623932
title: NeuroMDAVIS: Visualization of single-cell multi-omics data under deep learning Framework

description: Datasets have been used in the work, entitled "NeuroMDAVIS: Visualization of single-cell multi-omics data under deep learning Framework", can be found in this repository.
DOI: 10.6084/m9.figshare.10006109
title: MOESM6 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 6: Table S7. Pathway enrichment analysis of differentially expressed genes in paired comparison of ER+ bone METs versus matched PBTs.
DOI: 10.6084/m9.figshare.10006109.v1
title: MOESM6 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 6: Table S7. Pathway enrichment analysis of differentially expressed genes in paired comparison of ER+ bone METs versus matched PBTs.
DOI: 10.6084/m9.figshare.16818320.v1
title: Solvability of a regular polynomial vector optimization problem without convexity

description: In this paper, we study the solvability of a nonconvex regular polynomial vector optimization problem on a nonempty closed set. We introduce regularity conditions for the polynomial vector optimization problem and study their properties and characterizations. Under the regularity conditions, we establish the nonemptiness and boundedness of the solution sets of the problem. As a by-product, we infer two Frank–Wolfe type theorems for the nonconvex polynomial vector optimization problem. Finally, we investigate the solution stability of the problem.
DOI: 10.6084/m9.figshare.10006115
title: MOESM7 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 7: Table S8. Test association between immune score and baseline clinical variables.
DOI: 10.6084/m9.figshare.10006115.v1
title: MOESM7 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 7: Table S8. Test association between immune score and baseline clinical variables.
DOI: 10.6084/m9.figshare.10006124
title: MOESM8 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 8: Table S9. Test association between sTILs and baseline clinical variables.
DOI: 10.6084/m9.figshare.10006124.v1
title: MOESM8 of Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

description: Additional file 8: Table S9. Test association between sTILs and baseline clinical variables.
DOI: 10.6084/m9.figshare.16815564
title: Additional file 6 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation

description: Additional file 6: Table S5 DEGs results and GO term of PMA, QKI5, QKI5 M1 RNA-seq
DOI: 10.6084/m9.figshare.16815567
title: Additional file 7 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation

description: Additional file 7: Table S6 QKI5 transcriptionally regulated genes
DOI: 10.14272/kajyjuiydcjssi-uhfffaoysa-n/chmo0000482
title: electrospray ionisation mass spectrometry (ESMS) ()
title: InChI=1S/C16H29O5PSi/c1-16(2,3)23(7,8)21-14-11-9-10-13(12-14)15(18-4)22(17,19-5)20-6/h9-12,15H,1-8H3

description: dataset for electrospray ionisation mass spectrometry (ESMS) ESI-MS m/z [M+Na]+calcd for C16H29O5PSiNa 383.1419; found 383.1498.
DOI: 10.14272/kajyjuiydcjssi-uhfffaoysa-n/chmo0000636
title: Fourier transform infrared spectroscopy (FTIR) ()
title: InChI=1S/C16H29O5PSi/c1-16(2,3)23(7,8)21-14-11-9-10-13(12-14)15(18-4)22(17,19-5)20-6/h9-12,15H,1-8H3

description: dataset for Fourier transform infrared spectroscopy (FTIR) IR (ATR, ṽ) = 2955 (m), 2930 (m), 2857 (w), 1601 (w), 1482 (w), 1473 (w), 1273 (s), 1253 (s), 1055 (s), 1028 (vs), 1003 (m), 984 (m), 865 (m), 827 (s), 815 (m), 780 (s), 764 (w) cm–1.
DOI: 10.14272/kajyjuiydcjssi-uhfffaoysa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) ()
title: InChI=1S/C16H29O5PSi/c1-16(2,3)23(7,8)21-14-11-9-10-13(12-14)15(18-4)22(17,19-5)20-6/h9-12,15H,1-8H3

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR) 13C NMR (CDCl3, 126 MHz) δ 155.88, 155.86, 135.59, 129.51, 129.49, 121.14, 121.09, 120.49, 119.65, 80.71, 58.66, 58.54, 53.68, 25.69, 18.24, -4.45 ppm.
DOI: 10.5258/soton/d2072
title: Data Supporting the paper: Broadband Low-Loss On-Body UHF to Millimeter-Wave Surface Wave Links using Flexible Textile Single Wire Transmission Lines

description: Dataset supporting the article "Broadband Low-Loss On-Body UHF to Millimeter-Wave Surface Wave Links using Flexible Textile Single Wire Transmission Lines" in the IEEE Open Journal of Antennas and Propagation
DOI: 10.5281/zenodo.6559214
title: Transcriptome data of maize leaves inoculated with water and Colletotrichum graminicola

description: The experiment was conducted in the greenhouse of Plant Protection Institute, Chinese Academy of Agricultural Sciences in 2019. The transcriptome sequencing was performed on a typical maize variety B73. For biological stress treatment, the maize leaves were inoculated with water and <em>Colletotrichum graminicola</em><em>. </em>The first sampling of maize leaves was performed at 0 h after treatment of water. Subsequent samples of maize leaves were taken at 24h, 40h, 60h and 96h after inoculation with <em>C. graminicola</em>. Three biological replicates of leaf samples were collected at each time point. Total RNA was extracted from leaf samples using Trizol method. Then, the RNA was analyzed by agrose gel electrophoresis. RNA-seq libraries was finally constructed with the Illumina standard mRNASeq Prep Kit (TruSeq RNA and DNA Sample Preparation Kits).
DOI: 10.5281/zenodo.6559213
title: Transcriptome data of maize leaves inoculated with water and Colletotrichum graminicola

description: The experiment was conducted in the greenhouse of Plant Protection Institute, Chinese Academy of Agricultural Sciences in 2019. The transcriptome sequencing was performed on a typical maize variety B73. For biological stress treatment, the maize leaves were inoculated with water and <em>Colletotrichum graminicola</em><em>. </em>The first sampling of maize leaves was performed at 0 h after treatment of water. Subsequent samples of maize leaves were taken at 24h, 40h, 60h and 96h after inoculation with <em>C. graminicola</em>. Three biological replicates of leaf samples were collected at each time point. Total RNA was extracted from leaf samples using Trizol method. Then, the RNA was analyzed by agrose gel electrophoresis. RNA-seq libraries was finally constructed with the Illumina standard mRNASeq Prep Kit (TruSeq RNA and DNA Sample Preparation Kits).
DOI: 10.14469/hpc/10498
title: BOB cycle, B-Ph and acetic acid, Reactant @ wB97XD, G = -1465.981773

description: Gaussian 16 (C01) calculation
DOI: 10.6084/m9.figshare.19779688
title: data.xlsx

description: PM<sub>2.5</sub> related data and population data of 31 provinces in China
DOI: 10.6084/m9.figshare.19785415
title: Fig 5C and D

description: Xcelligence data generated for correlation with cell type and cell index
DOI: 10.6084/m9.figshare.19785418
title: Fig 5C and D_part2

description: xCELLigence data on correlation between cell type and Cell index at significant time point
DOI: 10.6084/m9.figshare.19785418.v1
title: Fig 5C and D_part2

description: xCELLigence data on correlation between cell type and Cell index at significant time point
DOI: 10.6084/m9.figshare.19785427
title: Fig 5E

description: xCELLIgence data generated for correlation between cell cluster and cell index
DOI: 10.6084/m9.figshare.19785430
title: Fig 5E_part2

description: xCelligence data for comparison of cell cluster and significant time points
DOI: 10.6084/m9.figshare.19785430.v1
title: Fig 5E_part2

description: xCelligence data for comparison of cell cluster and significant time points
DOI: 10.6084/m9.figshare.19785415.v1
title: Fig 5C and D

description: Xcelligence data generated for correlation with cell type and cell index
DOI: 10.6084/m9.figshare.19586263
title: Fig 5a and b

description: xCELLigence recording of growth rates of endometrial cells
DOI: 10.6084/m9.figshare.19586263.v1
title: Fig 5a and b

description: xCELLigence recording of growth rates of endometrial cells
DOI: 10.6084/m9.figshare.19785403
title: Figure 5B_part 2

description: Data used to generate end point measurement of cell index at 100 hours
DOI: 10.6084/m9.figshare.19785403.v1
title: Figure 5B_part 2

description: Data used to generate end point measurement of cell index at 100 hours
DOI: 10.6084/m9.figshare.19785427.v1
title: Fig 5E

description: xCELLIgence data generated for correlation between cell cluster and cell index
DOI: 10.5281/zenodo.5548282
title: Фиторемедиация

description: Фиторемедиация и клеточная селекция. Фиторемедиация меди растениями, полученными с помощью клеточной селекции и устойчивыми к комплексному воздействию тяжелых металлов.
DOI: 10.5281/zenodo.5548281
title: Фиторемедиация

description: Фиторемедиация и клеточная селекция. Фиторемедиация меди растениями, полученными с помощью клеточной селекции и устойчивыми к комплексному воздействию тяжелых металлов.
DOI: 10.5281/zenodo.6559200
title: Live imaging data of XBP1 mRNA under control conditions.

description: Live imaging data of single XBP1 mRNA transcripts under control conditions.