cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9s2qex
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syngonium podophyllum",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027443-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17611/dp/18277033
title: Global ShakeMovie synthetic for July 06, 2020 MW 5.5 MARIANA ISLANDS
DOI: 10.17611/dp/18277037
title: Global ShakeMovie synthetic for July 06, 2020 MW 6.2 W. CAROLINE ISLANDS, MICRONESIA
DOI: 10.17611/dp/18277041
title: Global ShakeMovie synthetic for July 06, 2020 MW 5.7 SOUTHEAST OF HONSHU, JAPAN
DOI: 10.17611/dp/18277045
title: Global ShakeMovie synthetic for July 06, 2020 MW 6.7 JAVA SEA
DOI: 10.17611/dp/18277801
title: Global ShakeMovie synthetic for July 07, 2020 MW 5.4 PACIFIC-ANTARCTIC RIDGE
DOI: 10.17611/dp/18278549
title: Global ShakeMovie synthetic for July 08, 2020 MW 5.0 WESTERN INDIAN-ANTARCTIC RIDGE
DOI: 10.17611/dp/18285083
title: Global ShakeMovie synthetic for July 14, 2020 MW 5.8 FLORES SEA
DOI: 10.17611/dp/18285087
title: Global ShakeMovie synthetic for July 15, 2020 MW 5.8 PANAMA
DOI: 10.17611/dp/18287903
title: Global ShakeMovie synthetic for July 17, 2020 MW 7.1 EASTERN NEW GUINEA REG., P.N.G.
DOI: 10.17611/dp/18287907
title: Global ShakeMovie synthetic for July 17, 2020 MW 6.0 NEAR COAST OF NORTHERN CHILE
DOI: 10.17611/dp/18287911
title: Global ShakeMovie synthetic for July 17, 2020 MW 6.1 ANDAMAN ISLANDS, INDIA REGION
DOI: 10.17611/dp/18288177
title: Global ShakeMovie synthetic for July 18, 2020 MW 5.8 SOLOMON ISLANDS
DOI: 10.17611/dp/18289317
title: Global ShakeMovie synthetic for July 19, 2020 MW 5.5 SOUTH INDIAN OCEAN
DOI: 10.17611/dp/18293358
title: Global ShakeMovie synthetic for July 21, 2020 MW 6.0 FIJI ISLANDS REGION
DOI: 10.17611/dp/18294610
title: Global ShakeMovie synthetic for July 22, 2020 MW 6.4 XIZANG
DOI: 10.17611/dp/18294614
title: Global ShakeMovie synthetic for July 22, 2020 MW 5.6 ALASKA PENINSULA
DOI: 10.15468/dl.3x8ypt
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocrenilabrus philander (Weber, 1897)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021811-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2vm20
title: Data from: CRISPR-induced distributed immunity in microbial populations

description: In bacteria and archaea, viruses are the primary infectious agents, acting
 as virulent, often deadly pathogens. A form of adaptive immune defense
 known as CRISPR-Cas enables microbial cells to acquire immunity to viral
 pathogens by recognizing specific sequences encoded in viral genomes. The
 unique biology of this system results in evolutionary dynamics of host and
 viral diversity that cannot be fully explained by the traditional models
 used to describe microbe-virus coevolutionary dynamics. Here, we show how
 the CRISPR-mediated adaptive immune response of hosts to invading viruses
 facilitates the emergence of an evolutionary mode we call distributed
 immunity - the coexistence of multiple, equally-fit immune alleles among
 individuals in a microbial population. We use an eco-evolutionary modeling
 framework to quantify distributed immunity and demonstrate how it emerges
 and fluctuates in multi-strain communities of hosts and viruses as a
 consequence of CRISPR-induced coevolution under conditions of low viral
 mutation and high relative numbers of viral protospacers. We demonstrate
 that distributed immunity promotes sustained diversity and stability in
 host communities and decreased viral population density that can lead to
 viral extinction. We analyze sequence diversity of experimentally
 coevolving populations of Streptococcus thermophilus and their viruses
 where CRISPR-Cas is active, and find the rapid emergence of distributed
 immunity in the host population, demonstrating the importance of this
 emergent phenomenon in evolving microbial communities.
description: Multi-scale model of
 CRISPR-induced host-viral co-evolutionThis code presents a
 flexible framework for considering the co-evolutionary dynamics of hosts
 and viruses which interact via a CRISPR immune mechanism. The code is
 written in Matlab. Instructions on how to utilize the code including an
 example file are found in the README file.CRISPR_DI_Coevolution_Code_Archive.zip
DOI: 10.5061/dryad.b460g
title: Data from: The evolution of obligate sex: the roles of sexual selection and recombination

description: The evolution of sex is one of the greatest mysteries in evolutionary
 biology. An even greater mystery is the evolution of obligate sex,
 particularly when competing with facultative sex and not with complete
 asexuality. Here, we develop a stochastic simulation of an obligate allele
 invading a facultative population, where males are subject to sexual
 selection. We identify a range of parameters where sexual selection can
 contribute to the evolution of obligate sex: Especially when the cost of
 sex is low, mutation rate is high, and the facultative individuals do not
 reproduce sexually very often. The advantage of obligate sex becomes
 larger in the absence of recombination. Surprisingly, obligate sex can
 take over even when the population has a lower mean fitness as a result.
 We show that this is due to the high success of obligate males that can
 compensate the cost of sex.
description: OtakeoverFC++ code file containing the stochastic simulation of a facultative population over taken by an obligate sub-population.
DOI: 10.5061/dryad.58qt0
title: Data from: The fate of phosphorus fertilizer in Amazon soya bean fields

description: Fertilizer-intensive soya bean agriculture has recently expanded in
 southeastern Amazônia, and whereas intensive fertilizer use in the
 temperate zone has led to widespread eutrophication of freshwater
 ecosystems, the effects in tropical systems are less well understood. We
 examined the fate of fertilizer P by comparing P forms and budgets across
 a chronosequence of soya bean fields (converted to soya beans between 2003
 and 2008) and forests on an 800 km2 soya bean farm in Mato Grosso, Brazil.
 Soya bean fields were fertilized with 50 kg P ha-1 yr-1 (30 kg P ha-1 y-1
 above what is removed in crops). We used modified Hedley fractionation to
 quantify soil P pools and found increases in less-plant-available
 inorganic pools and decreases in organic pools in agricultural soils
 compared with forest. Fertilizer P did not move below 20 cm. Measurements
 of P sorption capacity suggest that while fertilizer inputs quench close
 to half of the sorption capacity of fast-reacting pools, most added P is
 bound in more slowly reacting pools. Our data suggest that this
 agricultural system currently has a low risk of P losses to waterways and
 that long time-scales are required to reach critical soil thresholds that
 would allow continued high yields with reduced fertilizer inputs.
description: soil_chem_databulk_density_dataP_fraction_dataP_sorption_data
DOI: 10.5061/dryad.52472
title: Data from: Life stage and species identity affect whether habitat subsidies enhance or simply redistribute consumer biomass

description: 1. Quantifying the response of mobile consumers to changes in habitat
 availability is essential for determining the degree to which
 population-level productivity is habitat limited rather than regulated by
 other, potentially density-independent factors. 2. Over landscape scales,
 this can be explored by monitoring changes in density and foraging as
 habitat availability varies. As habitat availability increases, densities
 may: (1) decrease (unit-area production decreases; weak habitat
 limitation); (2) remain stable (unit-area production remains stable;
 habitat limitation); or (3) increase (unit-area production increases;
 strong habitat limitation). 3. We tested the response of mobile estuarine
 consumers over five months to changes in habitat availability in situ by
 comparing densities and feeding rates on artificial reefs that were or
 were not adjacent to neighboring artificial reefs or nearby natural
 reefs). 4. Using either constructed or natural reefs to manipulate habitat
 availability, we documented three-fold density decreases among juvenile
 stone crabs as habitat increased (i.e. weak habitat imitation). However,
 for adult stone crabs, density remained stable across treatments,
 demonstrating that habitat limitation presents a bottleneck in this
 species’ later life history. Oyster toadfish densities also did not change
 with increasing habitat availability (i.e. habitat limitation), but
 densities of other cryptic fishes decreased as habitat availability
 increased (i.e. weak limitation). Feeding and abundance data suggested
 that some mobile fishes experience habitat limitation, or, potentially in
 one case, strong limitation across our habitat manipulations. 5. These
 findings of significant, community-level habitat limitation provide
 insight into how global declines in structurally complex estuarine
 habitats may have reduced the fishery production of coastal ecosystems.
description: Keller et al.
 2017_JAE_all dataDensity of juvenile
 stone crabs, adult stone crabs (Menippe mercenaria), oyster toadfish
 (Opsanus tau), and small cryptic fishes (gobies (Gobiidae) and blennies
 (Blenniidae) per block pair over a five-month period in 2012. Comparisons
 made between HHA (high habitat availability) and LHA (low habitat
 availability) treatments, and between HNHA (high natural habitat
 availability) and LHA treatments. Also, data on the percent of each reef
 foraged on (µ ± SE) for the a) HHA (high habitat availability) or b) HNHA
 (high natural habitat availability) patch reefs versus LHA (low habitat
 availability) patch reefs over a five-month period in 2012. Lastly, data
 on the count of fishes video-frame-1 and d) fish bites minute-1 on HHA and
 LHA treatments during September and October video recordings (SH =
 sheepshead [Archosargus probatocephalus], BSB = black sea bass
 [Centropristis striata]; PF = planehead filefish [Stephanolepis hispidus],
 and TOT represents all fishes combined).
DOI: 10.5061/dryad.dk34h
title: Data from: The mayfly nymph Austrophlebioides pusillus Harker defies common osmoregulatory assumptions

description: Osmoregulation is a key physiological function, critical for homeostasis.
 The basic physiological mechanisms of osmoregulation are thought to be
 well established. However, through a series of experiments exposing the
 freshwater mayfly nymph Austrophlebioides pusillus (Ephemeroptera) to
 increasing salinities, we present research that challenges the extent of
 current understanding of the relationship between osmoregulation and
 mortality. A. pusillus had modelled 96 h LC10, LC50 and LC99 of 2.4, 4.8
 and 10 g l−1 added synthetic marine salt (SMS), respectively. They were
 strong osmoregulators. At aquarium water osmolality of
 256 ± 3.12 mmol kg−1 (±s.e.; equivalent to 10 g l−1 added SMS), the
 haemolymph osmolality of A. pusillus was a much higher
 401 ± 4.18 mmol kg−1 (±s.e.). The osmoregulatory capacity of A. pusillus
 did not break down, even at the salinity corresponding to their LC99, thus
 their mortality at this concentration is due to factors other than
 increased internal osmotic pressure. No freshwater invertebrate has been
 previously reported as suffering mortality from rises in salinity that are
 well below the iso-osmotic point. Recently, studies have reported reduced
 abundance/richness of Ephemeroptera with slightly elevated salinity. Given
 that salinization is an increasing global threat to freshwaters, there is
 an urgent need for studies into the osmophysiology of the Ephemeroptera to
 determine if their loss at locations with slightly elevated salinity is a
 direct result of external salinity or other, possibly physiological,
 causes.
description: Dowse et al 2016 Mayfly
 Data Proc RSOS
DOI: 10.5061/dryad.3418j
title: Data from: Soil microbial communities alter leaf chemistry and influence allelopathic potential among coexisting plant species

description: While both plant–soil feedbacks and allelochemical interactions are key
 drivers of plant community dynamics, the potential for these two drivers
 to interact with each other remains largely unexplored. If soil microbes
 influence allelochemical production, this would represent a novel
 dimension of heterogeneity in plant–soil feedbacks. To explore the linkage
 between soil microbial communities and plant chemistry, we experimentally
 generated soil microbial communities and evaluated their impact on leaf
 chemical composition and allelopathic potential. Four native perennial
 old-field species (two each of Aster and Solidago) were grown in pairwise
 combination with each species’ soil microbial community as well as a
 sterilized inoculum. We demonstrated unequivocally that variation in soil
 microbial communities altered leaf chemical fingerprints for all focal
 plant species and also changed their allelopathic potential. Soil microbes
 reduced allelopathic potential in bioassays by increasing germination
 25–54% relative to sterile control soils in all four species. Plants grown
 with their own microbial communities had the lowest allelopathic
 potential, suggesting that allelochemical production may be lessened when
 growing with microbes from conspecifics. The allelopathic potential of
 plants grown in congener and confamilial soils was indistinguishable from
 each other, indicating an equivalent response to all non-conspecific
 microbial communities within these closely related genera. Our results
 clearly demonstrated that soil microbial communities cause changes in leaf
 tissue chemistry that altered their allelopathic properties. These
 findings represent a new mechanism of plant–soil feedbacks that may
 structure perennial plant communities over very small spatial scales that
 must be explored in much more detail.
description: HPLC -
 A.novae-angliaeHPLC characterization of
 leaves of A. novae-angliae grown in various soil microbial
 communitiesHPLC -
 A.pilosusHPLC characterization of
 leaves of A. pilosus grown in various soil microbial
 communitiesHPLC-S.canadensisHPLC characterization of leaves of S. canadensis grown in various soil microbial communitiesHPLC-S.rugosaHPLC characterization of leaves of Solidago rugosa grown in various soil microbial communities
DOI: 10.5061/dryad.458rf
title: Data from: Cerebral white matter lesions and affective episodes correlate in male individuals with bipolar disorder

description: Background: Cerebral white matter lesions (WML) have been found in normal
 aging, vascular disease and several neuropsychiatric conditions.
 Correlations of WML with clinical parameters in BD have been described,
 but not with the number of affective episodes, illness duration, age of
 onset and Body Mass Index in a well characterized group of euthymic
 bipolar adults. Herein, we aimed to evaluate the associations between
 bipolar course of illness parameters and WML measured with volumetric
 analysis. Methods: In a cross-sectional study 100 euthymic individuals
 with BD as well as 54 healthy controls (HC) were enrolled to undergo brain
 magnetic resonance imaging using 3T including a FLAIR sequence for
 volumetric assessment of WML-load using FSL-software. Additionally,
 clinical characteristics and psychometric measures including Structured
 Clinical Interview according to DSM-IV, Hamilton-Depression, Young Mania
 Rating Scale and Beck’s Depression Inventory were evaluated. Results:
 Individuals with BD had significantly more (F = 3.968, p &lt; .05) WML
 (Mdn = 3710mm3; IQR = 2961mm3) than HC (Mdn = 2185mm3; IQR = 1665mm3). BD
 men (Mdn = 4095mm3; IQR = 3295mm3) and BD women (Mdn = 3032mm3; IQR =
 2816mm3) did not significantly differ as to the WML-load or the number and
 type of risk factors for WML. However, in men only, the number of
 manic/hypomanic episodes (r = 0.72; p &lt; .001) as well as depressive
 episodes (r = 0.51; p &lt; .001) correlated positively with WML-load.
 Conclusions: WML-load strongly correlated with the number of manic
 episodes in male BD patients, suggesting that men might be more vulnerable
 to mania in the context of cerebral white matter changes.
description: data on white matter
 lesions in bipolar disorderThe data sheet contains
 all volumetric and demographic variables and that were used for
 statistical analysis in our study. Data are either continuous or binary. A
 comprehensive description of variables is given in the
 file.datafile_bipolar.xlsx
DOI: 10.5061/dryad.p342d
title: Data from: Vine tendrils use contact chemoreception to avoid conspecific leaves

description: Movement and growth habit of climbing plants have attracted attention
 since the time of Charles Darwin; however, there are no reports on whether
 plants can choose suitable hosts or avoid unsuitable ones based on
 chemoreception. Here, I show that the tendrils of Cayratia japonica
 (Vitaceae) appear to avoid conspecific leaves using contact chemoreception
 for oxalates, which are highly concentrated in C. japonica leaves. The
 coiling experiments show that C. japonica has a flexible plastic response
 to avoid coiling around conspecific leaves. The coiling response is
 negatively correlated with the oxalate content in the contacted leaves.
 Experiments using laboratory chemicals indicate that the tendrils avoid
 oxalate-coated plastic sticks. These results indicate that the tendrils of
 C. japonica avoid coiling around a conspecific leaf based on contact
 chemoreception for oxalate compounds. The tendrils of climbing plants may
 function as a chemoreceptor system to detect the chemical cues of a
 contacted plant.
description: supporting_raw_data
DOI: 10.5061/dryad.bt167
title: Data from: Provision of care for chronic kidney disease by non-nephrologists in a developing nation: a national survey

description: Objectives The prevalence of chronic kidney disease (CKD) in developing
 countries has increased dramatically. This study aimed to explore the
 practice patterns of non-dialysis-dependent CKD care in an affluent
 developing country. Settings Primary and specialised healthcare facilities
 of public and private sectors in the United Arab Emirates. Participants
 159 non-nephrologist physicians practising in the United Arab Emirates.
 Interventions A 28-item online self-administered questionnaire based on
 CKD clinical practice guidelines. Primary and secondary outcome measures
 The physicians' approach to identifying and managing patients with
 CKD. Results The survey was completed by 159 non-nephrologists, of whom
 135 reported having treated patients with CKD. Almost all the respondents
 screen patients with hypertension and diabetes for CKD, but one-third of
 them do not screen patients with cardiovascular disease and elderly
 patients for CKD. The use of accurate CKD screening tests (estimated
 glomerular filtration rate and albumin/creatinine ratio) was suboptimal
 (77% and 59% of physicians used the procedures, respectively). One-third
 of the physicians do not offer treatment with inhibitors of the
 renin–angiotensin system to patients with CKD, and only 66% offer
 antilipid treatment. In general, the primary healthcare physicians are
 more familiar than secondary healthcare physicians with the diagnosis and
 management of patients with CKD. Conclusions We identified substantial
 physician-declared deficiencies in the practice of identifying and
 managing early CKD. Integration of quality CKD care within the healthcare
 system is required to face the increasing burden of CKD in the United Arab
 Emirates and possibly in other developing nations.
description: Provision of care for
 chronic kidney disease 1Provision of care for chronic
 kidney disease by non-nephrologists
 1.xlsxProvision of care for
 chronic kidney disease 2Provision of care for chronic
 kidney disease by non-nephrologists
 2.xlsx
DOI: 10.5061/dryad.0k1r0
title: Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data

description: Marine systems have traditionally been thought of as “open” with few
 barriers to gene flow. In particular, many marine organisms in the
 Southern Ocean purportedly possess circumpolar distributions that have
 rarely been well verified. Here, we use the highly abundant and endemic
 Southern Ocean brittle star Ophionotus victoriae to examine genetic
 structure and determine whether barriers to gene flow have existed around
 the Antarctic continent. Ophionotus victoriae possesses feeding
 planktotrophic larvae with presumed high dispersal capability, but a
 previous study revealed genetic structure along the Antarctic Peninsula.
 To test the extent of genetic differentiation within O. victoriae, we
 sampled from the Ross Sea through the eastern Weddell Sea. Whereas two
 mitochondrial DNA markers (16S rDNA and COI) were employed to allow
 comparison to earlier work, a 2b-RAD single-nucleotide polymorphism (SNP)
 approach allowed sampling of loci across the genome. Mitochondrial data
 from 414 individuals suggested three major lineages, but 2b-RAD data
 generated 1,999 biallelic loci that identified four geographically
 distinct groups from 89 samples. Given the greater resolution by SNP data,
 O. victoriae can be divided into geographically distinct populations
 likely representing multiple species. Specific historical scenarios that
 explain current population structure were examined with approximate
 Bayesian computation (ABC) analyses. Although the Bransfield Strait region
 shows high diversity possibly due to mixing, our results suggest that
 within the recent past, dispersal processes due to strong currents such as
 the Antarctic Circumpolar Current have not overcome genetic subdivision
 presumably due to historical isolation, questioning the idea of large open
 circumpolar populations in the Southern Ocean.
description: 2b-RAD STRUCTURE
 alignment of Ophionotus victoriae (Meyer)1,999 bi-allelic SNP
 loci using Dr. Eli Meyer's (Oregon State University) scripts which
 can be found at (https://github.com/Eli-Meyer)Ophionotus_Meyer_pipeline.stru2b-RAD STRUCTURE alignment of Ophionotus victoriae (STACKS)1,739 bi-allelic SNP loci using using the STACKS software package.Ophionotus_STACKS.struOphionotus_cleaned_fastaCompressed fasta files that have been screened for quality, size and presence of the AlfI restriction site. This data is ready for further processing through STACKS software, Eli Meyer's (Oregon State University) scripts (https://github.com/Eli-Meyer) or through custom software.