cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5975293
title: ICSE16

description: Replication package for our ICSE 2016 paper.Bitbucket repository in the paper has more details. <br><br>
DOI: 10.6084/m9.figshare.5975293.v1
title: ICSE16

description: Replication package for our ICSE 2016 paper.Bitbucket repository in the paper has more details. <br><br>
DOI: 10.6084/m9.figshare.5975164
title: Fileset: EFFECTS OF DENSITY DRIVEN FLOWS ON THE LONG-TERM MORPHODYNAMIC EVOLUTION OF FUNNEL-SHAPED ESTUARIES

description: In this fileset you will find a folder for each figure. Each folder contains: 1) the dataset used in the figure and 2) the necessary matlab scripts to reproduce each figure.
DOI: 10.6084/m9.figshare.5975146
title: dataset for results

description: these are the datasets that were used to generate the figures for the paper.please refer to the codes for detailed information for reproducing the results.<br>The "tif" files were for the global maps in the main manuscript and some supporting information.The amazon files were for the figure 4.
DOI: 10.6084/m9.figshare.5975164.v1
title: Fileset: EFFECTS OF DENSITY DRIVEN FLOWS ON THE LONG-TERM MORPHODYNAMIC EVOLUTION OF FUNNEL-SHAPED ESTUARIES

description: In this fileset you will find a folder for each figure. Each folder contains: 1) the dataset used in the figure and 2) the necessary matlab scripts to reproduce each figure.
DOI: 10.6084/m9.figshare.5975146.v1
title: dataset for results

description: these are the datasets that were used to generate the figures for the paper.please refer to the codes for detailed information for reproducing the results.<br>The "tif" files were for the global maps in the main manuscript and some supporting information.The amazon files were for the figure 4.
DOI: 10.6084/m9.figshare.5974978
title: A mobile endocytic network connects clathrin-independent receptor endocytosis to recycling and promotes T cell activation

description: This file contains raw data of publication by E.B. Compeer et al. Nature Communications 2018. (link will be updated when paper is published online).
DOI: 10.6084/m9.figshare.5974978.v2
title: A mobile endocytic network connects clathrin-independent receptor endocytosis to recycling and promotes T cell activation

description: This file contains raw data of publication by E.B. Compeer et al. Nature Communications 2018. (link will be updated when paper is published online).
DOI: 10.6084/m9.figshare.5974978.v3
title: A mobile endocytic network connects clathrin-independent receptor endocytosis to recycling and promotes T cell activation

description: This file contains raw data of publication by E.B. Compeer et al. Nature Communications 2018. (link will be updated when paper is published online).
DOI: 10.6084/m9.figshare.5974978.v5
title: A mobile endocytic network connects clathrin-independent receptor endocytosis to recycling and promotes T cell activation

description: This file contains raw data of publication by E.B. Compeer et al. Nature Communications 2018. (link will be updated when paper is published online).
DOI: 10.6084/m9.figshare.5974978.v4
title: A mobile endocytic network connects clathrin-independent receptor endocytosis to recycling and promotes T cell activation

description: This file contains raw data of publication by E.B. Compeer et al. Nature Communications 2018. (link will be updated when paper is published online).
DOI: 10.6084/m9.figshare.5973007
title: Simulation code and instructions from A model-based analysis of tissue targeting efficacy of nanoparticles

description: The compressed folder, model.tar.gz, contains C++ source files. In addition, README.txt file is provided in the folder with instructions to compile the code and execute simulation.
DOI: 10.6084/m9.figshare.5973007.v1
title: Simulation code and instructions from A model-based analysis of tissue targeting efficacy of nanoparticles

description: The compressed folder, model.tar.gz, contains C++ source files. In addition, README.txt file is provided in the folder with instructions to compile the code and execute simulation.
DOI: 10.6084/m9.figshare.5972905
title: SupplementaryDataSheetS1.xlsx

description: The membrane proteome variations associated with tomato pericarp ripening have been investigated by mass spectrometry-based label-free proteomics. Protein patterns were compared between mature green (MG30) and red ripe (R45) stages. LC-MS/MS was performed using a LTQ-Orbitrap Discovery mass spectrometer. Label free quantification was performed using MaxQuant.
DOI: 10.6084/m9.figshare.5972887
title: PLOSone_impGP_data.zip

description: The data provided here is supplementary material to a journal article under review with PLOSone: <br>"Impedance-based Gaussian processes for modeling human motor behavior in physical and non-physical interaction"
DOI: 10.6084/m9.figshare.5972887.v1
title: PLOSone_impGP_data.zip

description: The data provided here is supplementary material to a journal article under review with PLOSone: <br>"Impedance-based Gaussian processes for modeling human motor behavior in physical and non-physical interaction"
DOI: 10.6084/m9.figshare.5972728
title: Subject_20.mat

description: Data of Subject 20<br>
DOI: 10.6084/m9.figshare.5972728.v1
title: Subject_20.mat

description: Data of Subject 20<br>
DOI: 10.6084/m9.figshare.5972725
title: Subject_19.mat

description: Data of Subject 19
DOI: 10.6084/m9.figshare.5972725.v1
title: Subject_19.mat

description: Data of Subject 19
DOI: 10.6084/m9.figshare.5972722
title: Subject_18.mat

description: Data of Subject 18
DOI: 10.6084/m9.figshare.5972722.v1
title: Subject_18.mat

description: Data of Subject 18
DOI: 10.6084/m9.figshare.5972719
title: Subject_17.mat

description: Data of Subject 17
DOI: 10.6084/m9.figshare.5972719.v1
title: Subject_17.mat

description: Data of Subject 17
DOI: 10.6084/m9.figshare.5972716
title: Subject_16.mat

description: Data of Subject 16
DOI: 10.6084/m9.figshare.5972716.v1
title: Subject_16.mat

description: Data of Subject 16
DOI: 10.6084/m9.figshare.5972713
title: Subject_15.mat

description: Data of Subject 15
DOI: 10.6084/m9.figshare.5972713.v1
title: Subject_15.mat

description: Data of Subject 15
DOI: 10.6084/m9.figshare.5972710
title: Subject_14.mat

description: Data of Subject 14
DOI: 10.6084/m9.figshare.5972710.v1
title: Subject_14.mat

description: Data of Subject 14
DOI: 10.6084/m9.figshare.5972704
title: Subject_13.mat

description: Data of Subject 13
DOI: 10.6084/m9.figshare.5972704.v1
title: Subject_13.mat

description: Data of Subject 13
DOI: 10.6084/m9.figshare.5972695
title: Subject_12.mat

description: Data of Subject 12
DOI: 10.6084/m9.figshare.5972695.v1
title: Subject_12.mat

description: Data of Subject 12
DOI: 10.6084/m9.figshare.5972692
title: A model to estimate seabird field metabolic rates: Phylogeny

description: The phylogeny used for the analyses.
DOI: 10.6084/m9.figshare.5972692.v1
title: Phylogeny

description: The phylogeny used for the analyses.
DOI: 10.6084/m9.figshare.5972689
title: Subject_11.mat

description: Data of Subject 11
DOI: 10.6084/m9.figshare.5972689.v1
title: Subject_11.mat

description: Data of Subject 11
DOI: 10.6084/m9.figshare.5972686
title: Subject_10.mat

description: Data of Subject 10<br>
DOI: 10.6084/m9.figshare.5972686.v1
title: Subject_10.mat

description: Data of Subject 10<br>
DOI: 10.6084/m9.figshare.5972680
title: Subject_09.mat

description: Data of Subject 09
DOI: 10.6084/m9.figshare.5972680.v1
title: Subject_09.mat

description: Data of Subject 09
DOI: 10.6084/m9.figshare.5972677
title: Subject_08.mat

description: Data of Subject 08
DOI: 10.6084/m9.figshare.5972677.v1
title: Subject_08.mat

description: Data of Subject 08
DOI: 10.6084/m9.figshare.5972674
title: Subject_07.mat

description: Data of Subject 07
DOI: 10.6084/m9.figshare.5972674.v1
title: Subject_07.mat

description: Data of Subject 07
DOI: 10.6084/m9.figshare.5972665
title: Subject_06.mat

description: Data of Subject 06
DOI: 10.6084/m9.figshare.5972665.v1
title: Subject_06.mat

description: Data of Subject 06
DOI: 10.6084/m9.figshare.5972662
title: Subject_05.mat

description: Data of Subject 05
DOI: 10.6084/m9.figshare.5972662.v1
title: Subject_05.mat

description: Data of Subject 05
DOI: 10.6084/m9.figshare.5972656
title: Subject_04.mat

description: Data of Subject 04
DOI: 10.6084/m9.figshare.5972656.v1
title: Subject_04.mat

description: Data of Subject 04
DOI: 10.6084/m9.figshare.5972650
title: Subject_03.mat

description: Data of Subject 03
DOI: 10.6084/m9.figshare.5972650.v1
title: Subject_03.mat

description: Data of Subject 03
DOI: 10.6084/m9.figshare.5972647
title: Subject_02.mat

description: Data of Subject 02
DOI: 10.6084/m9.figshare.5972647.v1
title: Subject_02.mat

description: Data of Subject 02
DOI: 10.6084/m9.figshare.5972632
title: Subject_01.mat

description: Data of Subject 01<br>
DOI: 10.6084/m9.figshare.5972632.v1
title: Subject_01.mat

description: Data of Subject 01<br>
DOI: 10.6084/m9.figshare.5972629
title: Supplementary Material for: Glucocorticoids Reduce Aberrant O-Glycosylation of IgA1 in IgA Nephropathy Patients

description: <b><i>Background/Aims:</i></b> IgA nephropathy is associated with aberrant <i>O</i>-glycosylation of IgA1, which is recognized by autoantibodies leading to the formation of circulating immune complexes. Some of them, after deposition into kidney mesangium, trigger glomerular injury. In patients with active disease nonresponding to angiotensin-converting enzyme inhibitors or angiotensin II blockers, corticosteroids are recommended. <b><i>Methods:</i></b> The relationship between the corticosteroid therapy and serum levels of IgA, aberrantly <i>O</i>-glycosylated IgA1, IgA-containing immune complexes and their mesangioproliferative activity was analyzed in IgA nephropathy patients and disease and healthy controls. <b><i>Results:</i></b> Prednisone therapy significantly reduced proteinuria and levels of serum IgA, galactose-deficient IgA1, and IgA-IgG immune complexes in IgA nephropathy patients and thus reduced differences in all of the above parameters between IgAN patients and control groups. A moderate but not significant reduction of mesangioproliferative potential of IgA-IgG immune complexes and IgA sialylation was detected. <b><i>Conclusion:</i></b> The prednisone therapy reduces overall aberrancy in IgA1 <i>O</i>-glycosylation in IgA nephropathy patients, but the measurement of IgA1 parameters does not allow us to predict the prednisone therapy outcome in individual patients.
DOI: 10.6084/m9.figshare.5972512
title: R skript of the steps involved in analysing trajectories of rotifers

description: steps involved in analysing trajectories of rotifers as explained in the paper "<b><i>Switching between swimming states in rotifers – case study </i></b><b>Keratella cochlearis</b> " by Obertegger et al. in Marine and Freshwater Behaviour and Physiology
DOI: 10.6084/m9.figshare.5972512.v1
title: R skript of the steps involved in analysing trajectories of rotifers

description: steps involved in analysing trajectories of rotifers as explained in the paper "<b><i>Switching between swimming states in rotifers – case study </i></b><b>Keratella cochlearis</b> " by Obertegger et al. in Marine and Freshwater Behaviour and Physiology
DOI: 10.21227/xbb4-9j72
title: OCTA-500

description: Optical coherence tomography angiography (OCTA) is a novel imaging modality that allows a micron-level resolution to present the three-dimensional structure of the retinal vascular.We propose a new multi-modality dataset, dubbed OCTA-500. It contains 500 subjects with two field of view (FOV) types, including OCT and OCTA volumes, six types of projections, four types of text labels and two types of pixel-level labels. The dataset contains more than 360K images with a size of about 80GB. We will upload the encrypted dataset first, and the password will be released later in this article.
DOI: 10.6084/m9.figshare.5972305
title: Setup Instructions and Samples

description: A word document with instructions for downloading, installing and setting up Audacity and Kaleidoscope in preparation for the 2018 workshop.Sample files for analysis and examination during the workshop.Database files to go with Bat Recording Manager.Audacity Setup.docx revised to include instructions for installing and configuring AutoHotKey to help with repetitive operations.<br>
DOI: 10.6084/m9.figshare.5972305.v2
title: Setup Instructions and Samples

description: A word document with instructions for downloading, installing and setting up Audacity and Kaleidoscope in preparation for the 2018 workshop.Sample files for analysis and examination during the workshop.<br>
DOI: 10.6084/m9.figshare.5972305.v3
title: Setup Instructions and Samples

description: A word document with instructions for downloading, installing and setting up Audacity and Kaleidoscope in preparation for the 2018 workshop.Sample files for analysis and examination during the workshop.<br>
DOI: 10.6084/m9.figshare.5972305.v4
title: Setup Instructions and Samples

description: A word document with instructions for downloading, installing and setting up Audacity and Kaleidoscope in preparation for the 2018 workshop.Sample files for analysis and examination during the workshop.Database files to go with Bat Recording Manager.<br>
DOI: 10.6084/m9.figshare.5972305.v5
title: Setup Instructions and Samples

description: A word document with instructions for downloading, installing and setting up Audacity and Kaleidoscope in preparation for the 2018 workshop.Sample files for analysis and examination during the workshop.Database files to go with Bat Recording Manager.<br>
DOI: 10.6084/m9.figshare.5972305.v7
title: Setup Instructions and Samples

description: A word document with instructions for downloading, installing and setting up Audacity and Kaleidoscope in preparation for the 2018 workshop.Sample files for analysis and examination during the workshop.Database files to go with Bat Recording Manager.Audacity Setup.docx revised to include instructions for installing and configuring AutoHotKey to help with repetitive operations.<br>
DOI: 10.6084/m9.figshare.5972305.v6
title: Setup Instructions and Samples

description: A word document with instructions for downloading, installing and setting up Audacity and Kaleidoscope in preparation for the 2018 workshop.Sample files for analysis and examination during the workshop.Database files to go with Bat Recording Manager.Audacity Setup.docx revised to include instructions for installing and configuring AutoHotKey to help with repetitive operations.<br>
DOI: 10.6084/m9.figshare.5972296.v1
title: Bat Recording Manager

description: A program for managing collections of full spectrum recordings of bats
DOI: 10.6084/m9.figshare.5972296.v2
title: Bat Recording Manager

description: A program for managing collections of full spectrum recordings of bats.c6.2.6660 incorporates the import and export of collections of pictures in the image compare window.
DOI: 10.6084/m9.figshare.5972296.v3
title: Bat Recording Manager

description: A program for managing collections of full spectrum recordings of bats.v6.2.6660 incorporates the import and export of collections of pictures in the image compare window.v6.2.6661 fixes some bugs and speed issues in 6660.
DOI: 10.6084/m9.figshare.5972296.v5
title: Bat Recording Manager

description: A program for managing collections of full spectrum recordings of bats.v6.2.6660 incorporates the import and export of collections of pictures in the image compare window.v6.2.6661 fixes some bugs and speed issues in 6660.v6.2.6680 tries to fix some database updating problems and adds additional debugging in this area.v7.0.6760 - Major improvements and changes.First define the additional shortvut key in Audacity - CTRL-SHIFT-M=Open menu in focussed track. New item in 'View' menu- Analyse and Import, will open a folder of .wav files and sequentially open them in Audacity. When annotated and the label file saved and Audacity closed the next file will be opened. If the label file is not saved then the process stops and will resume on the next invocation of Analyse and Import on that folder. As each file id opened the label track wil be automatically created and named.and the view ill zoom to the first 5 seconds of the .wav track.
DOI: 10.6084/m9.figshare.5972296.v4
title: Bat Recording Manager

description: A program for managing collections of full spectrum recordings of bats.v6.2.6660 incorporates the import and export of collections of pictures in the image compare window.v6.2.6661 fixes some bugs and speed issues in 6660.v6.2.6680 tries to fix some database updating problems and adds additional debugging in this area.
DOI: 10.17028/rd.lboro.5972248
title: Interview Transcripts for the EPSRC funded project Design for Additive Manufacturing (D4AM)

description: This dataset contains the transcripts of 11 interviews carried out in 2016 during the EPSRC funded project Design for Additive Manufacturing (D4AM). The interviews explore the knowledge and experience of 18 experts in designing end-use components produced using additive manufacturing processes. The interviews shed some light on how practitioners design end-use components for additive manufacturing. <br>
DOI: 10.6084/m9.figshare.5972245
title: Sources of variability in quantifying circulating thymosin beta-4: literature review and recommendations

description: <b>Introduction</b>: Thymosin beta-4 (TB4) is an endogenous peptide with protective and regenerative effects in models of cellular and organ injury. TB4 is increasingly measured as a potential plasma or serum biomarker in human cardiovascular, liver, infectious, and autoimmune disease. <b>Areas covered</b>: The focus of this review is the quantification of TB4 in clinical cohort studies and whether reported TB4 concentrations differ with respect to method of sample preparation. We survey current literature for studies measuring TB4 in human serum or plasma and compare reported concentrations in healthy controls. <b>Expert opinion</b>: We find substantial intra- and inter- study variability in healthy controls, and a lack of protocol standardization. We further highlight three factors that may confound TB4 clinical measurements and should be considered in future study design: 1) residual platelets remaining in suspension after centrifugation, 2) TB4 release following <i>ex vivo</i> platelet activation, and 3) specificity of assays towards posttranslational modifications. Accordingly, we put forth our recommendations to minimize residual and activated platelets during sample collection, and to cross-validate TB4 measurements using both antibody-based and mass spectrometry-based methods.
DOI: 10.6084/m9.figshare.5972245.v1
title: Sources of variability in quantifying circulating thymosin beta-4: literature review and recommendations

description: <b>Introduction</b>: Thymosin beta-4 (TB4) is an endogenous peptide with protective and regenerative effects in models of cellular and organ injury. TB4 is increasingly measured as a potential plasma or serum biomarker in human cardiovascular, liver, infectious, and autoimmune disease. <b>Areas covered</b>: The focus of this review is the quantification of TB4 in clinical cohort studies and whether reported TB4 concentrations differ with respect to method of sample preparation. We survey current literature for studies measuring TB4 in human serum or plasma and compare reported concentrations in healthy controls. <b>Expert opinion</b>: We find substantial intra- and inter- study variability in healthy controls, and a lack of protocol standardization. We further highlight three factors that may confound TB4 clinical measurements and should be considered in future study design: 1) residual platelets remaining in suspension after centrifugation, 2) TB4 release following <i>ex vivo</i> platelet activation, and 3) specificity of assays towards posttranslational modifications. Accordingly, we put forth our recommendations to minimize residual and activated platelets during sample collection, and to cross-validate TB4 measurements using both antibody-based and mass spectrometry-based methods.
DOI: 10.6084/m9.figshare.5972197
title: PrePex Pain Medication

description: Data on Placement and Removal for PrePex Devices for Medical Male Circumcision
DOI: 10.6084/m9.figshare.5972197.v1
title: PrePex Pain Medication

description: Data on Placement and Removal for PrePex Devices for Medical Male Circumcision
DOI: 10.17028/rd.lboro.5972170
title: Data from the survey for the EPSRC funded project Design for Additive Manufacturing (D4AM)

description: This spreadsheet contains the answers to the 2016 survey on Design for Additive Manufacturing practice. 110 professional designers have participated to the survey providing information regarding their knowledge and experience of designing end-use components for Additive Manufacturing.<br><br>Please contact the research team if you would like to request access to this data.
DOI: 10.6084/m9.figshare.5972161
title: SNPs in corkwing wrasses (n=65) from Northern Europe with ancestral state

description: 1.2 million SNPs of Corkwing wrasse in Northern Europe. REF = ancestral state
DOI: 10.6084/m9.figshare.5972161.v1
title: SNPs in corkwing wrasses (n=65) from Northern Europe with ancestral state

description: 1.2 million SNPs of Corkwing wrasse in Northern Europe. REF = ancestral state
DOI: 10.6084/m9.figshare.5972146
title: Cinema Context web statistics 2011-2017.xlsx

description: This file contains data extracted from DPC, “Statistics for: www.cinemacontext.nl” (https://dpc.uba.uva.nl/awstats/awstats.pl?config=www.cinemacontext.nl). The statistics for the Cinema Context website are collected by the Digital Production Center (DPC) of the University Library Amsterdam (UBA), the organization that hosts and maintains the database and web interface. DPC collects the web statistics with the program Advanced Web Statistics (AWStats, version 7.0). The extracted data in this spreadsheet support the analysis of the use of Cinema Context for the article 'Writing Cinema Histories with Digital Databases. The Case of Cinema Context’, authored by Julia Noordegraaf, Kathleen Lotze and Jaap Boter. <i>Tijdschrift voor Mediageschiedenis </i>vol. 21, no. 2 (2018), 106-126. Http://www.tijdschriftmediageschiedenis.nl/index.php/tmg/article/view/369.<br>
DOI: 10.6084/m9.figshare.5972146.v1
title: Cinema Context web statistics 2011-2017.xlsx

description: This file contains data extracted from DPC, “Statistics for: www.cinemacontext.nl” (https://dpc.uba.uva.nl/awstats/awstats.pl?config=www.cinemacontext.nl). The statistics for the Cinema Context website are collected by the Digital Production Center (DPC) of the University Library Amsterdam (UBA), the organization that hosts and maintains the database and web interface. DPC collects the web statistics with the program Advanced Web Statistics (AWStats, version 7.0). The extracted data in this spreadsheet support the analysis of the use of Cinema Context for the article 'Writing Cinema Histories with Digital Databases. The Case of Cinema Context’, authored by Julia Noordegraaf, Kathleen Lotze and Jaap Boter. <i>Tijdschrift voor Mediageschiedenis </i>vol. 21, no. 2 (2018), 106-126. Http://www.tijdschriftmediageschiedenis.nl/index.php/tmg/article/view/369.<br>
DOI: 10.6084/m9.figshare.5972092
title: Screenshots of the implemented persuasive strategies in SilverCycling

description: Screenshots of the implemented persuasive strategies in SilverCycling
DOI: 10.6084/m9.figshare.5972092.v1
title: Screenshots of the implemented persuasive strategies in SilverCycling

description: Screenshots of the implemented persuasive strategies in SilverCycling