cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12130980.v94
title: MOOD Maps of Google community mobility change during the COVID-19 outbreak

description: The MOOD project (MOnitoring Outbreak events for Disease surveillance in a data science context. H2020) has geo-referenced the data Google has published as a series of PDF files presenting reports on national and subnational human mobility levels relative to a baseline data of late January 2020. The details and the PDF files can be found at https://www.google.com/covid19/mobility/.<br>More detail on these files can be found at https://www.moodspatialdata.com/humanmobilityforcovid19 <br>The first set of data were released on April 2 2020 and have been revised weekly since then. The maps now utilise the CSV data released by Google. Please note that the maps figures use a mean of the previous three days, while the Google PDFs use a single days data so there will be differences between values in our maps when compare to the Google PDFs.<br>The authors have extracted the majority of these data into a series of excel spreadsheets. Each worksheet provides the data for % change in numbers of records at various types of location categories illustrated by: retail and recreation, grocery and pharmacy, parks and beaches, transit stations, workplaces and residential (columns f to K). A second set of columns calculates the difference of each value from the mean values for each category (columns L to P) Columns A to E contain geographical details. Column Q contains the names used to link to a mapping file.There are separate worksheets for the date of the data from each dated release (e.g. 2903, 0504 etc.) and separate worksheets calculating the changes between specific dates.<br>A second spreadsheet has been added calculating the 3 day moving mean of each day from the 15th of February. Each day is referenced by the Gregorian calendar day count. So day 48 = Feb 17th.<br>The maps (for EU & Global) display these data. We provide 600 dpi jpegs of the Global (“WD”) and European (“EU”) mapped values at the latest date available, for each of the mobility categories: retail and recreation (“retrec”) , grocery and pharmacy (“grocphar”) , parks (“parks”) , transit stations (“transit”), residential (“resid”) and workplaces (“work”). We also provide maps of the changes from the previous week (“ch”).<br>All data extracting and subsequent processing have been carried out by ERGO (Environmental Research Group Oxford, c/o Dept Zoology, University of Oxford) on behalf of the MOOD H2020 project. Data will be periodically updated. Additional maps can be obtained on request to the authors.
DOI: 10.6084/m9.figshare.13318754.v3
title: Population genomics and TE dynamics in an invasive ant

description: This dataset contains output files generated by analyzing single as well as pool-seq data of <i>Cardiocondyla obscurior</i>. For more details please see the associated paper (soon to be submitted).
DOI: 10.48370/ofd/mudxkq/jskdtl
title: Golovinomyces cynoglossi (Wallr.) Heluta F-2960 (4).tif

description: :unav
DOI: 10.48370/ofd/mudxkq/jklmsz
title: Golovinomyces cynoglossi (Wallr.) Heluta F-2960 (3).tif

description: :unav
DOI: 10.48370/ofd/mudxkq/boimsu
title: Golovinomyces cynoglossi (Wallr.) Heluta F-2960.tif

description: :unav
DOI: 10.48370/ofd/mudxkq/30y3ji
title: Golovinomyces cynoglossi (Wallr.) Heluta F-2960 (2).tif

description: :unav
DOI: 10.6084/m9.figshare.19107191
title: Diabetes 130-US hospitals for years 1999-2008 Data Set

description: http://archive.ics.uci.edu/ml/datasets/Diabetes+130-US+hospitals+for+years+1999-2008<br>Adapted for ehrapy. Details: https://github.com/theislab/ehrapy-datasets<br>
DOI: 10.48370/ofd/mudxkq
title: Golovinomyces cynoglossi (Wallr.) Heluta, 2960

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.3761562.v1880
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1879
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.48370/ofd/g33hch/dh7kl8
title: Golovinomyces cynoglossi (Wallr.) Heluta F-0663.tif

description: :unav
DOI: 10.48370/ofd/g33hch
title: Golovinomyces cynoglossi (Wallr.) Heluta, 663

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.13483119.v3
title: Source data for Wälchli, T. et al. Nature Protocols 2021 Hierarchical imaging and computational analysis of three-dimensional vascular network architecture in the entire postnatal and adult mouse brain

description: These data were used in the analysis presented in the paper:<br><br>Wälchli, T. et al. Nature Protocols 2021 Hierarchical imaging and computational analysis of three-dimensional vascular network architecture in the entire postnatal and adult mouse brain<br>It contains the underlying data for the graphical Figures provided as individual .csv files (one for each figure/panel) with the linked figure noted within the file.<br><br>Please give credit to any of these data when appropriate.
DOI: 10.6084/m9.figshare.14838078
title: Supplementary Table 1

description: <i>18S: ribosomal RNA bands, SDH: Succinate Dehydogenase, MyoD: myoblast determination protein, IGF-1 Ea: Insulin-like growth factor 1 Ea-peptide, MAFbx: muscle atrophy F-box, MuRF1: muscle ring finger-1, Mstn: Myostatin, Pax7: Paired box protein Pax-7.</i>
DOI: 10.6084/m9.figshare.14838078.v2
title: Supplementary Table 1

description: <i>18S: ribosomal RNA bands, SDH: Succinate Dehydogenase, MyoD: myoblast determination protein, IGF-1 Ea: Insulin-like growth factor 1 Ea-peptide, MAFbx: muscle atrophy F-box, MuRF1: muscle ring finger-1, Mstn: Myostatin, Pax7: Paired box protein Pax-7.</i>
DOI: 10.6084/m9.figshare.14838078.v1
title: Supplementary Table 1

description: <i>18S: ribosomal RNA bands, SDH: Succinate Dehydogenase, MyoD: myoblast determination protein, IGF-1 Ea: Insulin-like growth factor 1 Ea-peptide, MAFbx: muscle atrophy F-box, MuRF1: muscle ring finger-1, Mstn: Myostatin, Pax7: Paired box protein Pax-7.</i>
DOI: 10.48370/ofd/ztmdal/yfuz09
title: Golovinomyces cynoglossi (Wallr.) Heluta F-0478.tif

description: :unav
DOI: 10.48370/ofd/ztmdal
title: Golovinomyces cynoglossi (Wallr.) Heluta, 478

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.3761562.v1884
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1883
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.48370/ofd/8il7ui/0op68x
title: Golovinomyces cynoglossi (Wallr.) Heluta F-1214.tif

description: :unav
DOI: 10.48370/ofd/8il7ui
title: Golovinomyces cynoglossi (Wallr.) Heluta, 1214

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.14685906.v1
title: NCOMMS-21-10552A

description: Source data for 10.21203/rs.3.rs-337166/v1
DOI: 10.6084/m9.figshare.13678429.v3
title: Chlorophyll-a Yearly Statistics

description: Each of the zip files contains the summary statistics of <b>chlorophyll-a for each year</b>, including mean, max, min, range, and standard deviation (sd) in GeoTIFF format.<br> Review publication for a more detailed data description.For R users, an R script has been provided to download data from Figshare directly from R. Script can be found at https://doi.org/10.6084/m9.figshare.13692037 and https://rpubs.com/mcastan2/DGCC_auxiliary_material with additional auxiliary material.<br>
DOI: 10.6084/m9.figshare.13678429.v2
title: Chlorophyll-a Yearly Statistics

description: Each of the zip files contains the summary statistics of <b>chlorophyll-a for each year</b>, including mean, max, min, range, and standard deviation in GeoTIFF format. Review publication for a more detailed data description.For R users, an R script has been provided to download data from Figshare directly from R. Script can be found at https://doi.org/10.6084/m9.figshare.13692037 and https://rpubs.com/mcastan2/DGCC_supp_material with additional supplementary code material. <br>
DOI: 10.48370/ofd/dfeomc/yc2wal
title: Golovinomyces cynoglossi (Wallr.) Heluta F-2883 (3).tif

description: :unav
DOI: 10.48370/ofd/dfeomc/gr0sgn
title: Golovinomyces cynoglossi (Wallr.) Heluta F-2883 (4).tif

description: :unav
DOI: 10.48370/ofd/dfeomc/rx1tqj
title: Golovinomyces cynoglossi (Wallr.) Heluta F-2883 (2).tif

description: :unav
DOI: 10.48370/ofd/dfeomc/8m8m5x
title: Golovinomyces cynoglossi (Wallr.) Heluta F-2883.tif

description: :unav
DOI: 10.6084/m9.figshare.14713899.v1
title: Vegetation cover restrict habitat suitability predictions of endemic Brazilian Atlantic Forest birds

description: Script and dataset to replicate the results of the manuscript Oliveira-Silva et al. - Vegetation cover restrict habitat suitability predictions of endemic Brazilian Atlantic Forest birds.
DOI: 10.48370/ofd/dfeomc
title: Golovinomyces cynoglossi (Wallr.) Heluta, 2883

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.14184572.v1
title: Ecophysiological differentiation between life stages in filmy ferns (Hymenophyllaceae)

description: For details about each file, see README.txt<br>Summary of methods:<br><br>Desiccation tolerance (DT) and light responses were measured in sporophytes and gametophytes of filmy ferns (family Hymenophyllaceae) on the island of Moorea, French Polynesia.<br>Samples were collected in the field and stored in plastic bags with a small amount of water to keep them fresh during transport to the lab.<br><br>To measure DT, pre-treatment maximum photochemical yield of photosystem II was measured in fresh plants after a 10 min period of dark-adaptation using a portable mini-PAM fluorometer (Walz Gmbh, Effeltrich, Germany). Samples were then transferred to desiccation chambers containing saturated salts at three different desiccation intensities or a control treatment with moist tissues (100% RH), and water withheld for either a short (2 d) or long (15 d) interval. Conditions inside the desiccation chambers were monitored during the experiment using Track-It RH/Temp dataloggers (Monarch Instrument, Amherst, NH) logging every 10 min or Hobo ProV2 dataloggers logging every 5 min. Salts used for desiccation and their corresponding mean water potentials and approximate relative humidity and VPD are as follows: LiCl (-282 MPa, 18% RH, 2.45 kPa), Mg(NO<sub>3</sub>)<sub>2</sub> (-86 MPa, 58% RH, 1.25 kPa), and NaCl (-38 MPa, 80% RH, 0.60 kPa). Following the desiccation treatment, plants were rewetted and yield of photosystem II was again measured at 0.5 h, 24 h, and 48 h following rewetting. Eight individuals per treatment were used for sporophytes. No replication by species was possible for gametophytes due to their cryptic morphology. All gametophytes were subjected to the same treatment (2 d at -86 MPa). Gametophytes were later identified to species by DNA barcoding.<br><br>Relative water content (RWC) was measured in a subset of samples by recording the mass of samples prior to the DT test (fresh mass), at each step of the DT test (turgid mass), then after drying them overnight in a drying oven at 65 °C following the DT test (dry mass). Relative water content was calculated as RWC = (TM - DM) / (FM - DM), where TM is turgid mass, DM is dry mass, and FM is fresh mass. Relative water content was not calculated for gametophytes, as these were too small to measure accurately with the balances available.<br><br>To measure light responses, rapid light response curves were constructed for each species by measuring photosynthetic yield at gradually increasing levels of photosynthetically active actinic light (400 nm to 700 nm) with the Light Curve function of the mini-PAM portable chlorophyll fluorometer (Walz Gmbh, Effeltrich, Germany) as described by the manufacturer. <br>
DOI: 10.48370/ofd/7oxrk0/mp1eal
title: Golovinomyces cynoglossi (Wallr.) Heluta F-1680.tif

description: :unav
DOI: 10.6084/m9.figshare.13562285.v2
title: Supplementary figures and files for the publication

description: The supplementary materials and figures for the following publication is hosted at this repository:<br><br><b>Profiling of open chromatin in developing pig (<i>Sus scrofa</i>) muscle to identify regulatory regions</b> <b> </b> Mazdak Salavati<sup>1,2</sup>, Shernae A. Woolley<sup>1</sup>, Yennifer Cortés Araya<sup>1</sup>, Michelle M. Halstead<sup>3</sup>, Claire Stenhouse<sup>1,4</sup>, Martin Johnsson<sup>1,5</sup>, Cheryl J. Ashworth<sup>1</sup>, Alan L. Archibald<sup>1</sup>, Francesc X. Donadeu<sup>1</sup>, Musa A. Hassan<sup>1,2<b>§</b></sup> and Emily L. Clark<sup>1,2,<b>§</b></sup> <b>Data Availability</b> The raw sequence data for the ATAC-Seq samples (n=24) are available via the European Nucleotide Archive (ENA) under accession number PRJEB41485. Details of all samples processed for the RNA-Seq dataset (n=26) can be accessed via the ENA under accession number PRJEB41488.
DOI: 10.48370/ofd/7oxrk0
title: Golovinomyces cynoglossi (Wallr.) Heluta, 1680

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.13562285.v1
title: Supplementary figures and files for the publication

description: The supplementary materials and figures for the following publication is hosted at this repository:<br><br><b>Profiling of open chromatin in developing pig (<i>Sus scrofa</i>) muscle to identify regulatory regions</b> <b> </b> Mazdak Salavati<sup>1,2</sup>, Shernae A. Woolley<sup>1</sup>, Yennifer Cortés Araya<sup>1</sup>, Michelle M. Halstead<sup>3</sup>, Claire Stenhouse<sup>1,4</sup>, Martin Johnsson<sup>1,5</sup>, Cheryl J. Ashworth<sup>1</sup>, Alan L. Archibald<sup>1</sup>, Francesc X. Donadeu<sup>1</sup>, Musa A. Hassan<sup>1,2<b>§</b></sup> and Emily L. Clark<sup>1,2,<b>§</b></sup> <b>Data Availability</b> The raw sequence data for the ATAC-Seq samples (n=24) are available via the European Nucleotide Archive (ENA) under accession number PRJEB41485. Details of all samples processed for the RNA-Seq dataset (n=26) can be accessed via the ENA under accession number PRJEB41488.
DOI: 10.6084/m9.figshare.13204316.v2
title: A location conversion method for roads through deep learning-based semantic matching and simplified qualitative direction knowledge representation

description: The data and codes that support the findings of the study. Configure of experimental environment and instructions for use are described in readme.docx.
DOI: 10.6084/m9.figshare.13204316.v1
title: Conversion from road location descriptions to spatial locations through deep learning-based semantic matching and simplified knowledge representation-based qualitative direction reasoning

description: The data and codes that support the findings of the study. Configure of experimental environment and instructions for use are described in readme.docx.
DOI: 10.6084/m9.figshare.14729235.v1
title: Original Data for High-Performance Photonic Transformers for DC Voltage Conversion

description: Measured I-V curves of the output at different input level. The information of the input is included in the name of the files.
DOI: 10.48370/ofd/rvwre6/dfmwwr
title: Golovinomyces cynoglossi (Wallr.) Heluta F-0473.tif

description: :unav
DOI: 10.48370/ofd/rvwre6
title: Golovinomyces cynoglossi (Wallr.) Heluta, 473

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.5856648.v1
title: Base datos PNP

description: Data set of vertebrates of PN Podocarpus<br>
DOI: 10.48370/ofd/0zsw4p/wurjq3
title: Golovinomyces cynoglossi (Wallr.) Heluta F-0475.tif

description: :unav
DOI: 10.48370/ofd/0zsw4p
title: Golovinomyces cynoglossi (Wallr.) Heluta, 475

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.14743323.v1
title: Figure4 - WholeGenomeSequencingAtlanticPuffin(71)

description: Files needed to recreate Figure 4 in the publication - Kersten et al. 2021 - DOI: <b>10.1038/s42003-021-02415-4</b><br>(https://www.biorxiv.org/content/10.1101/2020.11.05.351874v2.full)<br>1. 31 files for each of 10 output chains produced by EEMS using 71 Atlantic puffin nuclear genomes.<br>2. Fst values between 12 Atlantic Puffin colonies (ANGSD output).<br>3. Latitude and Longitude Coordinates of 12 Atlantic puffin colonies.<br>Detailed methods can be found in the manuscript.<br>
DOI: 10.6084/m9.figshare.7447499.v1
title: drying device for 24 vials - labware 3D print

description: 3D printed drying device for 24 vials. Models for lower part of device and upper part to connect nitrogen gas.Drying device in the lab, printed with a Stratasys Eden 350V 3D printer and high temperature acrylate based material (RGD 525). The 24 outlets are designed with standard Luer-Lock male connectors to enable the connection of disposable needles. <br>The zip file DryingKPL.zip contains all files including files for printing the lid (previous version was metal frame).
DOI: 10.6084/m9.figshare.14744250.v1
title: Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet induced hepatic steatosis by antagonizing PPARγ

description: Representative Images of 3T3-L1 adipocyte differentiation used for generating Figures11 and 12.<br>
DOI: 10.6084/m9.figshare.12386498.v3
title: OCCA

description: OCCA Matrix. See AIBECS.jl.<br>8 Jun 2021 update: Add JLD2 format<br>
DOI: 10.6084/m9.figshare.12386498.v2
title: OCCA

description: OCCA Matrix. See AIBECS.jl.<br>
DOI: 10.6084/m9.figshare.14705979.v1
title: Unicycler assemblies

description: Unicycler assemblies (normal mode, version 0.4.7) using ONT and Illumina HiSeq reads. <br>ONT reads were demultiplexed and basecalled using Guppy (version 4.2.3). Porechop (version 0.2.4) was considered to trim and remove ONT adapters with default parameters. Filtlong (version 0.2.0) was used to filter the ONT reads considering a minimum length of 1 kbp (--min_length 1000), a quality phred score of 20 (--mean_q_weight 20), retaining 90% of the total number of ONT reads ( --keep_percent 90) from a maximum 40x coverage (--target_bases).
DOI: 10.6084/m9.figshare.14706015.v1
title: Flye assemblies (long-read only assemblies)

description: Flye (version 2.8.3-b1695) [31] was run with all the passed ONT reads (phred score &gt; 7) available per barcode (--nano-raw), specifying the option to recover plasmids (--plasmids), indicating an expected genome size of 5 Mbp (--genome-size 5m) and considering 3 polishing rounds (--iterations 3). <br>ONT reads were demultiplexed and basecalled using Guppy (version 4.2.3). <br>
DOI: 10.6084/m9.figshare.14747952.v1
title: US-Hn1 flux and meteorological data

description: This dataset includes eddy covariance and meteorological measurements from the US-Hn1 flux towers from 2016-2019, as well as the data generated using each gap-filling methods.
DOI: 10.6084/m9.figshare.14721282.v12
title: THINGS-EEG

description: EEG data for 1854 object concepts presented in RSVP streams. Data from 50 participants.
DOI: 10.6084/m9.figshare.14721282.v11
title: THINGS-EEG

description: EEG data for 1854 object concepts presented in RSVP streams. Data from 50 participants.
DOI: 10.48370/ofd/au2fgc/cbmb3w
title: Golovinomyces depressus (Wallr.) Heluta F-1032.tif

description: :unav
DOI: 10.48370/ofd/au2fgc
title: Golovinomyces depressus (Wallr.) Heluta, 1032

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.14740482.v1
title: Aspergillus fumigatus acetate utilisation impacts virulence traits and pathogenicity

description: <i>Aspergillus fumigatus</i> is a major opportunistic fungal pathogen of immunocompromised and immunocompetent hosts. To successfully establish an infection, <i>A. fumigatus</i> needs to use host carbon sources, such as acetate, present in the body fluids and peripheral tissues. However, utilisation of acetate as a carbon source by fungi in the context of infection has not been investigated. This work shows that acetate is metabolised via different pathways in <i>A. fumigatus</i> and that acetate utilisation is under the regulatory control of a transcription factor (TF), FacB. <i>A. fumigatus</i> acetate utilisation is subject to carbon catabolite repression (CCR), although this is only partially dependent on the TF and main regulator of CCR CreA. The available extracellular carbon source, in this case glucose and acetate, significantly affected <i>A. fumigatus</i> virulence traits such as secondary metabolite secretion and cell wall composition, with the latter having consequences for resistance to oxidative stress, to anti-fungal drugs and to human neutrophil-mediated killing. Furthermore, deletion of <i>facB</i> significantly impaired the <i>in vivo</i> virulence of <i>A. fumigatus</i> in both insect and mammalian models of invasive aspergillosis. This is the first report on acetate utilisation in <i>A. fumigatus</i> and this work further highlights the importance of available host-specific carbon sources in shaping fungal virulence traits and subsequent disease outcome, and a potential target for the development of anti-fungal strategies.
DOI: 10.48370/ofd/n3igde/zrucym
title: Golovinomyces depressus (Wallr.) Heluta F-0544.tif

description: :unav
DOI: 10.48370/ofd/n3igde
title: Golovinomyces depressus (Wallr.) Heluta, 544

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.14766102.v1
title: antspyt1w helper data

description: downloadable cloud data for testing and processing
DOI: 10.6084/m9.figshare.14766102.v2
title: antspyt1w helper data

description: downloadable cloud data for testing and processing
DOI: 10.6084/m9.figshare.14766102.v4
title: antspyt1w helper data

description: downloadable cloud data for testing and processing
DOI: 10.6084/m9.figshare.14766102.v3
title: antspyt1w helper data

description: downloadable cloud data for testing and processing
DOI: 10.6084/m9.figshare.14766870.v3
title: FUTURIST_thermal_impact_prediction_ANNmodels_inputs

description: Trained FUTURIST ANN models on a global set of dams used to predict the likely thermal impact caused by dam on downstream rivers using readily available predictors. There are two separate models to be used for summer and winter seasons. Both the models use the same architecture, built using keras library. Ensure that the correct model is used for dams in northern or southern hemisphere with respect to the seasons.<br>Spreadsheet on the selected dams for training and validating the FUTURIST framework and on the planned dams used for predicting their thermal impacts is also provided. The spreadsheet contains all the necessary inputs for simulating the FUTURIST framework along with the ancillary information on their location, periods of analysis, and other logistics.<br>
DOI: 10.6084/m9.figshare.14766870.v2
title: Dataset_Models_FUTURIST_thermal_impact_prediction

description: Dataset on the selected dams for training and validating the FUTURIST framework and on the planned dams used for predicting their thermal impacts. The spreadsheet contains all the necessary inputs for simulating the FUTURIST framework along with the ancillary information on their location, periods of analysis, and other logistics.
DOI: 10.6084/m9.figshare.14770179.v2
title: Expression of nubbin and castor in Tribolium castaneum embryos and ovarioles

description: Confocal Z-stacks showing expression of the neuroblast timer genes <i>nubbin and castor</i> in ovarioles and embryos of the beetle <i>Tribolium castaneum</i>.<br>See uploaded word file for more details.
DOI: 10.6084/m9.figshare.14770179.v1
title: Expression of nubbin and castor in Tribolium castaneum embryos and ovarioles

description: Confocal Z-stacks showing expression of the neuroblast timer genes <i>hunchback, Krüppel, nubbin and castor</i> during segmentation in the beetle <i>Tribolium castaneum</i>.<br>See uploaded word file for more details.