cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1276010.v3
title: The syntaxin 31-induced gene, LESION SIMULATING DISEASE1 (LSD1), functions in <i>Glycine max</i> defense to the root parasite <i>Heterodera glycines</i>

description: Experiments show the membrane fusion genes α soluble NSF attachment protein (α-SNAP) and syntaxin 31 (Gm-SYP38) contribute to the ability of <i>Glycine max</i> to defend itself from infection by the plant parasitic nematode <i>Heterodera glycines</i>. Accompanying their expression is the transcriptional activation of the defense genes ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1) and NONEXPRESSOR OF PR1 (NPR1) that function in salicylic acid (SA) signaling. These results implicate the added involvement of the antiapoptotic, environmental response gene LESION SIMULATING DISEASE1 (LSD1) in defense. Roots engineered to overexpress the <i>G. max</i> defense genes Gm-α-SNAP, SYP38, EDS1, NPR1, BOTRYTIS INDUCED KINASE1 (BIK1) and xyloglucan endotransglycosylase/hydrolase (XTH) in the susceptible genotype <i>G. max</i><sub>[Williams 82/PI 518671]</sub> have induced Gm-LSD1 (Gm-LSD1–2) transcriptional activity. In reciprocal experiments, roots engineered to overexpress Gm-LSD1–2 in the susceptible genotype <i>G. max</i><sub>[Williams 82/PI 518671]</sub> have induced levels of SYP38, EDS1, NPR1, BIK1 and XTH, but not α-SNAP prior to infection. In tests examining the role of Gm-LSD1–2 in defense, its overexpression results in ∼52 to 68% reduction in nematode parasitism. In contrast, RNA interference (RNAi) of Gm-LSD1–2 in the resistant genotype <i>G. max</i><sub>[Peking/PI 548402]</sub> results in an 3.24–10.42 fold increased ability of <i>H. glycines</i> to parasitize. The results identify that Gm-LSD1–2 functions in the defense response of <i>G. max</i> to <i>H. glycines</i> parasitism. It is proposed that LSD1, as an antiapoptotic protein, may establish an environment whereby the protected, living plant cell could secrete materials in the vicinity of the parasitizing nematode to disarm it. After the targeted incapacitation of the nematode the parasitized cell succumbs to its targeted demise as the infected root region is becoming fortified.
DOI: 10.6084/m9.figshare.1276006.v3
title: Revision of the giant pterygote insect <i>Bojophlebia prokopi</i> Kukalová-Peck, 1985 (Hydropalaeoptera: Bojophlebiidae) from the Carboniferous of the Czech Republic, with the first cladistic analysis of fossil palaeopterous insects

description: The holotype is redescribed of the giant pterygote insect <i>Bojophlebia prokopi</i> Kukalová-Peck, 1985 from the Pennsylvanian of the Czech Republic. Multiple errors in the original description are documented and corrected. <i>Bojophlebia prokopi</i> has neither any visible traces of a costal brace nor an anal brace, but it does show triadic branchings of MA, MP, CuA, and even, as rare a plesiomorphy, of CuP. It is therefore rejected as a fossil stem mayfly and attributed as sister group of all other Hydropalaeoptera. The first cladistic analysis of fossil palaeopterous insects, including different palaeodictyopterid groups, is presented. A revised phylogeny of Hydropalaeoptera and the stem line of Ephemeroptera are suggested. Palaeodictyopterida is recognized as sister group of Neoptera; thus Palaeoptera <i>s.l</i>. is rejected as a paraphyletic taxon. Four new higher taxa – Paranotalia, Euhydropalaeoptera, Neopterygota and Litophlebioidea superfam. nov. – are introduced, as well as the new family Lithoneuridae.http://zoobank.org/urn/urn:lsid:zoobank.org:pub:1B16D6AB-2B29-4891-A61D-7A9212A85493
DOI: 10.6084/m9.figshare.1276010.v2
title: The syntaxin 31-induced gene, LESION SIMULATING DISEASE1 (LSD1), functions in <i>Glycine max</i> defense to the root parasite <i>Heterodera glycines</i>

description: Experiments show the membrane fusion genes α soluble NSF attachment protein (α-SNAP) and syntaxin 31 (Gm-SYP38) contribute to the ability of <i>Glycine max</i> to defend itself from infection by the plant parasitic nematode <i>Heterodera glycines</i>. Accompanying their expression is the transcriptional activation of the defense genes ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1) and NONEXPRESSOR OF PR1 (NPR1) that function in salicylic acid (SA) signaling. These results implicate the added involvement of the antiapoptotic, environmental response gene LESION SIMULATING DISEASE1 (LSD1) in defense. Roots engineered to overexpress the <i>G. max</i> defense genes Gm-α-SNAP, SYP38, EDS1, NPR1, BOTRYTIS INDUCED KINASE1 (BIK1) and xyloglucan endotransglycosylase/hydrolase (XTH) in the susceptible genotype <i>G. max</i><sub>[Williams 82/PI 518671]</sub> have induced Gm-LSD1 (Gm-LSD1–2) transcriptional activity. In reciprocal experiments, roots engineered to overexpress Gm-LSD1–2 in the susceptible genotype <i>G. max</i><sub>[Williams 82/PI 518671]</sub> have induced levels of SYP38, EDS1, NPR1, BIK1 and XTH, but not α-SNAP prior to infection. In tests examining the role of Gm-LSD1–2 in defense, its overexpression results in ∼52 to 68% reduction in nematode parasitism. In contrast, RNA interference (RNAi) of Gm-LSD1–2 in the resistant genotype <i>G. max</i><sub>[Peking/PI 548402]</sub> results in an 3.24–10.42 fold increased ability of <i>H. glycines</i> to parasitize. The results identify that Gm-LSD1–2 functions in the defense response of <i>G. max</i> to <i>H. glycines</i> parasitism. It is proposed that LSD1, as an antiapoptotic protein, may establish an environment whereby the protected, living plant cell could secrete materials in the vicinity of the parasitizing nematode to disarm it. After the targeted incapacitation of the nematode the parasitized cell succumbs to its targeted demise as the infected root region is becoming fortified.
DOI: 10.6084/m9.figshare.1276006.v2
title: Revision of the giant pterygote insect <i>Bojophlebia prokopi</i> Kukalová-Peck, 1985 (Hydropalaeoptera: Bojophlebiidae) from the Carboniferous of the Czech Republic, with the first cladistic analysis of fossil palaeopterous insects

description: The holotype is redescribed of the giant pterygote insect <i>Bojophlebia prokopi</i> Kukalová-Peck, 1985 from the Pennsylvanian of the Czech Republic. Multiple errors in the original description are documented and corrected. <i>Bojophlebia prokopi</i> has neither any visible traces of a costal brace nor an anal brace, but it does show triadic branchings of MA, MP, CuA, and even, as rare a plesiomorphy, of CuP. It is therefore rejected as a fossil stem mayfly and attributed as sister group of all other Hydropalaeoptera. The first cladistic analysis of fossil palaeopterous insects, including different palaeodictyopterid groups, is presented. A revised phylogeny of Hydropalaeoptera and the stem line of Ephemeroptera are suggested. Palaeodictyopterida is recognized as sister group of Neoptera; thus Palaeoptera <i>s.l</i>. is rejected as a paraphyletic taxon. Four new higher taxa – Paranotalia, Euhydropalaeoptera, Neopterygota and Litophlebioidea superfam. nov. – are introduced, as well as the new family Lithoneuridae.http://zoobank.org/urn/urn:lsid:zoobank.org:pub:1B16D6AB-2B29-4891-A61D-A9212A85493
DOI: 10.6084/m9.figshare.1276000
title: Multiresidue fully automated online SPE-HPLC-MS/MS method for the quantification of endocrine-disrupting and pharmaceutical compounds at trace level in surface water

description: The present work describes the development and validation of a sensitive method for the determination of traces of diverse groups of pharmaceuticals and endocrine disruptors in surface water. Thirty-seven substances have been selected, including 10 pesticides, 6 hormonal steroids and assimilates, 12 pharmaceuticals, 5 alkylphenols, 1 chlorophenol and 3 other well-known human contaminants, 1 UV filter and 2 plasticisers. An automated online solid-phase extraction (SPE) is directly coupled to liquid chromatography–tandem mass spectrometry. Different SPE columns have been tested, and the injection volume has been optimised. The developed analytical methodology is based on the direct injection of 2.5 mL of water sample acidified at pH 1.6 on an Oasis HLB loading column (20 × 2.1 mm) with 5-µm particles. Then, the chromatographic separation is achieved on a Kinetex XB C18 (100 × 2.1 mm; 1.7 µm) column, and the quantification is realised in multiple-reaction monitoring mode. The online SPE step warrants minimal sample handling, low solvent consumption, high sample throughput, saving time and costs. This method allows the quantification of the target analytes in the lower ng/L concentration range, with limits of quantification (LQs) between 100 pg/L and 10 ng/L, 26 compounds having LQ lower than 1 ng/L. The monitoring of two selected MS/MS transitions for each compound allows the reliable confirmation of positive findings even at the LQ level. The developed and validated methodology has been applied to the analysis of various real samples from two French rivers. Twelve target compounds have been detected in the environmental samples, and the major pollutants are pharmaceuticals usually used by humans (paracetamol, carbamazepine, oxazepam, ketoprofen, trimethoprim). The pesticides atrazine and carbendazim have been ubiquitously detected in real samples too. Metronidazole, sulfamethoxazole and diuron were also frequently quantified in the water samples.
DOI: 10.6084/m9.figshare.1276000.v2
title: Multiresidue fully automated online SPE-HPLC-MS/MS method for the quantification of endocrine-disrupting and pharmaceutical compounds at trace level in surface water

description: The present work describes the development and validation of a sensitive method for the determination of traces of diverse groups of pharmaceuticals and endocrine disruptors in surface water. Thirty-seven substances have been selected, including 10 pesticides, 6 hormonal steroids and assimilates, 12 pharmaceuticals, 5 alkylphenols, 1 chlorophenol and 3 other well-known human contaminants, 1 UV filter and 2 plasticisers. An automated online solid-phase extraction (SPE) is directly coupled to liquid chromatography–tandem mass spectrometry. Different SPE columns have been tested, and the injection volume has been optimised. The developed analytical methodology is based on the direct injection of 2.5 mL of water sample acidified at pH 1.6 on an Oasis HLB loading column (20 × 2.1 mm) with 5-µm particles. Then, the chromatographic separation is achieved on a Kinetex XB C18 (100 × 2.1 mm; 1.7 µm) column, and the quantification is realised in multiple-reaction monitoring mode. The online SPE step warrants minimal sample handling, low solvent consumption, high sample throughput, saving time and costs. This method allows the quantification of the target analytes in the lower ng/L concentration range, with limits of quantification (LQs) between 100 pg/L and 10 ng/L, 26 compounds having LQ lower than 1 ng/L. The monitoring of two selected MS/MS transitions for each compound allows the reliable confirmation of positive findings even at the LQ level. The developed and validated methodology has been applied to the analysis of various real samples from two French rivers. Twelve target compounds have been detected in the environmental samples, and the major pollutants are pharmaceuticals usually used by humans (paracetamol, carbamazepine, oxazepam, ketoprofen, trimethoprim). The pesticides atrazine and carbendazim have been ubiquitously detected in real samples too. Metronidazole, sulfamethoxazole and diuron were also frequently quantified in the water samples.
DOI: 10.6084/m9.figshare.1276000.v1
title: Multiresidue fully automated online SPE-HPLC-MS/MS method for the quantification of endocrine-disrupting and pharmaceutical compounds at trace level in surface water

description: The present work describes the development and validation of a sensitive method for the determination of traces of diverse groups of pharmaceuticals and endocrine disruptors in surface water. Thirty-seven substances have been selected, including 10 pesticides, 6 hormonal steroids and assimilates, 12 pharmaceuticals, 5 alkylphenols, 1 chlorophenol and 3 other well-known human contaminants, 1 UV filter and 2 plasticisers. An automated online solid-phase extraction (SPE) is directly coupled to liquid chromatography–tandem mass spectrometry. Different SPE columns have been tested, and the injection volume has been optimised. The developed analytical methodology is based on the direct injection of 2.5 mL of water sample acidified at pH 1.6 on an Oasis HLB loading column (20 × 2.1 mm) with 5-µm particles. Then, the chromatographic separation is achieved on a Kinetex XB C18 (100 × 2.1 mm; 1.7 µm) column, and the quantification is realised in multiple-reaction monitoring mode. The online SPE step warrants minimal sample handling, low solvent consumption, high sample throughput, saving time and costs. This method allows the quantification of the target analytes in the lower ng/L concentration range, with limits of quantification (LQs) between 100 pg/L and 10 ng/L, 26 compounds having LQ lower than 1 ng/L. The monitoring of two selected MS/MS transitions for each compound allows the reliable confirmation of positive findings even at the LQ level. The developed and validated methodology has been applied to the analysis of various real samples from two French rivers. Twelve target compounds have been detected in the environmental samples, and the major pollutants are pharmaceuticals usually used by humans (paracetamol, carbamazepine, oxazepam, ketoprofen, trimethoprim). The pesticides atrazine and carbendazim have been ubiquitously detected in real samples too. Metronidazole, sulfamethoxazole and diuron were also frequently quantified in the water samples.
DOI: 10.6084/m9.figshare.1275980
title: Fact or Fiction_Main.doc

description: HBs
DOI: 10.6084/m9.figshare.1275976
title: Data MAE in Crowding - Experiment 1 [NO DISTRACTION]

description: Raw data of the first experiment, in which we estimated Full and Phantom MAEs strength without distraction.
DOI: 10.6084/m9.figshare.1275981
title: Fact or Fiction

description: In a previous study we showed that people generally perceive members of low status groups to be more expressive of anger and less of calm compared to their higher status counterparts. In that study we operationalised status in terms of race and perceivers were asked to rate the extent to which they expected either a low status (African targets) or high status (Caucasians targets) to be expressive of anger and calm. Although the results confirmed our theorising in terms of the hunchback stereotype, the specific racial context we used may be conceived by some as having pre-existing stereotypes regarding emotional expressions. That is, Black Africans are generally perceived to be more aggressive than Caucasians and this racial bias introduces another explanation to the patterns we found, over and above the theorised hunchback effect. For this reason, we plan to replicate the same experiment using the same racial context, but this time introducing another status variable - weight. Weight is generally negatively regarded in most societies and people often attach low social status to those who are ‘large’ compared to those who are thin. Note that individuals who are large generally score highly on warmth (Durante et al., 2014) and this physical feature provides a stringent test of the hunchback stereotype rather than a biased test of it, because the positive warmth perceptions should work against a negative anger perception. That is, if the hunchback stereotype is true, then beyond an effect of status based on race, one should also see a similar effect based on size – such that large people of any of the two racial groups would be expected to be (a) more expressive of anger, and (b) less expressive of calm, compared to thin targets. For applied reasons, we would also include clothing type (formal vs. casual) to explore whether or not members of low status group (race and size) are buffered against the hunchback stereotype if they are dressed in clothing that is presumed to accord high status in society (formal attire).
DOI: 10.6084/m9.figshare.1275975
title: Data MAE in Crowding - Experiment 2 [RSVP]

description: Raw data of the second experiment, in which we estimated Full and Phantom MAEs strength with an interfering RSVP task during adaptation.
DOI: 10.6084/m9.figshare.1275976.v1
title: Data MAE in Crowding - Experiment 1 [NO DISTRACTION]

description: Raw data of the first experiment, in which we estimated Full and Phantom MAEs strength without distraction.
DOI: 10.6084/m9.figshare.1275980.v1
title: Fact or Fiction_Main.doc

description: HBs
DOI: 10.6084/m9.figshare.1275981.v1
title: Fact or Fiction

description: In a previous study we showed that people generally perceive members of low status groups to be more expressive of anger and less of calm compared to their higher status counterparts. In that study we operationalised status in terms of race and perceivers were asked to rate the extent to which they expected either a low status (African targets) or high status (Caucasians targets) to be expressive of anger and calm. Although the results confirmed our theorising in terms of the hunchback stereotype, the specific racial context we used may be conceived by some as having pre-existing stereotypes regarding emotional expressions. That is, Black Africans are generally perceived to be more aggressive than Caucasians and this racial bias introduces another explanation to the patterns we found, over and above the theorised hunchback effect. For this reason, we plan to replicate the same experiment using the same racial context, but this time introducing another status variable - weight. Weight is generally negatively regarded in most societies and people often attach low social status to those who are ‘large’ compared to those who are thin. Note that individuals who are large generally score highly on warmth (Durante et al., 2014) and this physical feature provides a stringent test of the hunchback stereotype rather than a biased test of it, because the positive warmth perceptions should work against a negative anger perception. That is, if the hunchback stereotype is true, then beyond an effect of status based on race, one should also see a similar effect based on size – such that large people of any of the two racial groups would be expected to be (a) more expressive of anger, and (b) less expressive of calm, compared to thin targets. For applied reasons, we would also include clothing type (formal vs. casual) to explore whether or not members of low status group (race and size) are buffered against the hunchback stereotype if they are dressed in clothing that is presumed to accord high status in society (formal attire).
DOI: 10.6084/m9.figshare.1275972
title: Motion Coherence Threshold - Experiment 3

description: In Experiment 3 we manipulated, individually for each observer, the motion coherence of the adapting pattern in the non-crowded and crowded conditions of the conventional MAE, in order to match its strength relative to that of the phantom MAE.
DOI: 10.6084/m9.figshare.1275973
title: Data MAE in Crowding - Experiment 3 [RSVP]

description: Raw data of the third experiment, in which we estimated Full and Phantom MAEs strength with an interfering RSVP task during adaptation.
DOI: 10.6084/m9.figshare.1275974
title: Data MAE in Crowding - Experiment 3 [NO DISTRACTION]

description: Raw data of the third experiment, in which we estimated Full and Phantom MAEs strength without distraction. In the third experiment we attempted to match the strength of the conventional MAE (in both the non-crowded and crowded conditions) to that of the phantom MAE in the non-distracted condition. This was done in order to obtain comparable conventional and phantom MAEs in the attention non-distracted condition and in non-crowded and crowded conditions.
DOI: 10.6084/m9.figshare.1275937
title: All in an afternoon: mixed breeding system in one-day lasting flowers of <i>Hypericum elodes</i> L. (Hypericaceae)

description: Knowledge about mixed mating systems can improve our understanding of the evolutionary dynamics of reproductive systems. Here we report a study of the floral and reproductive biology of <i>Hypericum elodes</i>, an Atlantic-European soft-water pools specialist which shows a floral architecture consistent with both self- and cross-pollination. Controlled pollination experiments were performed in a natural population during three consecutive years. Marked flowers were monitored until fruit production, and laboratory germination experiments were conducted with the seeds produced. Plants were self-compatible (SCI&gt;0.75), however, compared with selfing, cross-pollination enhanced fruit-set, seed-set and seedling growth, but not seed germination. Inbreeding depression (δ) was mild in the pre-dispersal stages (δ = 0.22 for fruit set, 0.18 for seed set and 0.13 for seed mass), low for germination percentage (δ = 0.003) and mild for seedling growth (δ = 0.23). The breeding system of <i>H. elodes</i> promotes outcrossing and assures reproductive success by means of competitive autogamy. Our results suggest a mixed mating strategy for the studied population, characterized by mild inbreeding depression (cumulative δ = 0.57), highlighting the benefit of this reproductive mode in unpredictable habitat, as the typical shallow-water meadows where <i>H. elodes</i> grows.
DOI: 10.6084/m9.figshare.1275972.v1
title: Motion Coherence Threshold - Experiment 3

description: In Experiment 3 we manipulated, individually for each observer, the motion coherence of the adapting pattern in the non-crowded and crowded conditions of the conventional MAE, in order to match its strength relative to that of the phantom MAE.
DOI: 10.6084/m9.figshare.1275973.v1
title: Data MAE in Crowding - Experiment 3 [RSVP]

description: Raw data of the third experiment, in which we estimated Full and Phantom MAEs strength with an interfering RSVP task during adaptation.
DOI: 10.6084/m9.figshare.1275926
title: Model-Based Multi-Objective Optimization: Taxonomy, Multi-Point Proposal, Toolbox and Benchmark: Supplementary Material

description: Extra results and code for our EMO 2015 paper
DOI: 10.6084/m9.figshare.1275354
title: Determination of the Optimal Dose Reduction Level via Iterative Reconstruction Using 640-Slice Volume Chest CT in a Pig Model (Raw data2/2)

description: Determination of the Optimal Dose Reduction Level via Iterative Reconstruction Using 640-Slice Volume Chest CT in a Pig Model Rawdata Part 2/2
DOI: 10.6084/m9.figshare.1275926.v1
title: Model-Based Multi-Objective Optimization: Taxonomy, Multi-Point Proposal, Toolbox and Benchmark: Supplementary Material

description: Extra results and code for our EMO 2015 paper
DOI: 10.6084/m9.figshare.1275342
title: Results of OCT grading.ods

description: Spreadsheet containing analysis of vascular filling for optic nerves, injured and uninjured, with and without treatment<br>
DOI: 10.6084/m9.figshare.1275353
title: Determination of the Optimal Dose Reduction Level via Iterative Reconstruction Using 640-Slice Volume Chest CT in a Pig Model (Raw data 1/2)

description: Hou yang CT 1