cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1119943221
title: The Netherlands BAG

description: The Netherlands BAG includes groups situated at five Dutch universities (Utrecht, Groningen, Amsterdam, Wageningen and Eindhoven) and at the Netherlands Cancer Institute in Amsterdam, with a total of twelve PIs. The structural biology research carried out in these groups is highly diverse, including prokaryotic and eukaryotic proteins with a strong focus on targets and processes of biomedical relevance. Central to many projects are protein receptors and their interactions with other proteins and with small molecule modulators. An additional major research area concerns structure-based protein engineering and design aiming at the characterization and engineering of new enzymes for green chemistry and new-to-nature reactions. Projects deal with membrane and soluble proteins, cell surface receptors, and protein-protein, protein-ribonucleotide, protein-drug and enzyme-ligand complexes.
DOI: 10.15151/esrf-es-1168800568
title: Cryo-trapping intermediate states in the CarH photoreceptor

description: CarH is a vitamin B12-dependent photoreceptor protein that binds to operator DNA in a tetrameric complex to inhibit gene expression. The tetramer is stable in dark conditions, while exposure to light induces tetramer dissolution and dissociation from DNA, thus allowing gene expression. The suppressed gene controls the biosynthesis of carotenoids that protects bacteria from excess of sunlight (Jost et al., 2015). CarH’s dissociation mechanism has been studied by time-resolved transient absorption spectroscopy. Two photoreaction pathways have been proposed, providing insight into a number of intermediates formed during the dissociation process (Kutta et al., 2015 ; Miller et al., 2020). In both mechanisms the cobalt (Co) atom contained in the corrin of the B12 moiety plays the most important role by sensing light. Co’s redox photodynamics involves the transient formation of intermediate states that result in CarH tetramer dissociation.
DOI: 10.15151/esrf-es-1274078829
title: Fast Access at Beamline ID19: Microtomography

description: The experimental programme at beamline ID19 underwent tremendous changes in the more than 20 years of operation: starting from Bragg diffraction topography (already with a substantial contribution of in situ experiments), the beamline pioneered hard X-ray phase contrast microtomography in routine user application, later coupled with polychromatic illumination to exploit hard X-rays up to 250 keV as well as short exposure times. Here, we propose an access route for routine microtomography which is fast, i.e. can be made available on short terms, and requires minimal overheads for the beamline staff. The basic idea is to deploy the robotic sample changer of the beamline which has already proven to be a useful tool during the pandemic where users remotely scanned and changed samples. It can be easily installed, with samples pre-mounted from the users loaded and made available in non-used evening and night shifts in a remote manner exactly like it was done during the pandemic.
DOI: 10.15151/esrf-es-1220326150
title: Exploring Newly Discovered Semiconducting Phases of Tin Monoselenide using XAS and HR-SXRD

description: This project is aimed at the study of the physical and structural properties of two newly discovered semiconducting phases of tin monoselenide, pi-SnSe and gamma-SnSe. Both differ in properties compared to the conventional phase α-SnSe, and the latter shows an ultra-small bandgap and subsequently, very high electrical conductivity. The ultimate goals of the proposal are (i) to employ XAS techniques for investigation of the local symmetry of the constituting elements, Sn and Se, in the pi-SnSe and gamma-SnSe phases with respect to alpha-SnSe. (ii) to use temperature resolved measurements for monitoring the evolution of phase transitions of these new phases. (iii) to elucidate the role of small amounts of Pb2+ cations in stabilizing π-SnSe. The results are expected to shed light also on the unique optical and electronic properties of these two new phases of tin monoselenide.
DOI: 10.15151/esrf-es-1220326617
title: Ligand K-edge Determination of Periodic Trends in Metal (Ti, Zr, Hf, Th, U) - Phosphorus Covalency

description: Understanding chemical trends down a full column of the periodic table is limited due to the paucity of complexes that can equivalently host both d-block and f-block metal sites. We have synthesised a series of phosphanide [M(Tren)(PH2)] (1) and phosphinidene [M(Tren)(PH)]-1 (2) organometallic compounds (M = Ti, Zr, Hf, Th, U). The two variants of compound differ in the nature of metal-phosphorous bonding – (1) containing a single M-P bond, while (2) exhibits an M=P double-bond. We propose to quantify metal-phosphorous bond covalency using phosphorous K pre-edge XANES analysis at ID21.This is a unique opportunity to study a full triad of the d-block and link it to the actinides, probing the 3d/4d/5d/6d/5f contributions to bonding. The results of this experiment will unlock differences in d-block versus f-block chemical properties, furthering the field of actinide covalency studies and providing a basis for improved nuclear waste management protocols.
DOI: 10.21227/gkfx-h637
title: Brain-computer interface-based motor imagery with visual and motor feedback improves convalescent stroke patients

description: This article provides an introduction to the field of datasets, including their types, characteristics, and applications. Datasets refer to collections of data that have been organized for specific purposes. They can come in various forms, including structured data, unstructured data, and semi-structured data. Each type of dataset has its own unique characteristics and uses. For example, structured data typically includes datasets that have been organized into tables and rows, such as spreadsheets or databases, while unstructured data typically includes text, images, and videos. Semi-structured data, on the other hand, combines elements of structured and unstructured data and typically includes datasets that have some organization but are not in a traditional table format. Applications of datasets span a wide range of fields, including machine learning, artificial intelligence, marketing, social science research, and more. By understanding the different types of datasets and their characteristics, users can choose the appropriate datasets for their specific projects and goals.
DOI: 10.34740/kaggle/dsv/5862236
title: Real_Estate_Sales_2001-2020
DOI: 10.5519/qd.5zy9tfgr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (317642 records)
DOI: 10.26188/20321655.v2
title: Data repository for "The genomic basis of temporal niche evolution in a diurnal rodent"

description: This repository contains datasets assocaited with the publication "The genomic basis of temporal niche evolution in a diurnal rodent", a collaboration between the Mallarino Lab at Princeton University and the Lucas lab at the Universty of Manchester. This study examined the evolution of diel temporal niche traits in the diurnal African striped mouse (<em>Rhabdomys pumilio</em>) from a comparative and functional perspective. Additionally, this study presents the first genome assembly for this species, deposited at NCBI under BioProject: PRJNA858857. <br> This repository contains the following: <br> 1) <strong>Rhabdomys_pumilio_final.gff.gz:</strong> A raw GFF-formatted gene annotation set for the <em>Rhabdomys pumilio </em>genome produced by Funannotate and used in transcriptomic analyses <br> 2) <strong>Rhabdomys_pumilio.mouse_gene_name_final.gff.gz:</strong> A copy of the above GFF-formatted gene annotation set for the <em>Rhabdomys pumilio</em> genome, in which gene symbols from the laboratory mouse (Mus musculus) have been assigned to their predicted R. pumilio orthologs. <br> 3) <strong>CompGenAnno.tar.gz:</strong> A folder of GFF-formatted annotations used in comparative genomic analyses, produced by directly lifting-over gene annotations from the Mus musculus genome (annotation: GCF_000001635.27_GRCm39_genomic.gff, assembly: GCF_000001635.27_GRCm39_genomic.fna) onto each of 23 other murid genome assemblies. Additionally, a manifest of each reference genome can be found in .tsv format (manifest_of_genome_assemblies_and_liftover_annotations.txt) along with a file with locus trees (locus_trees.txt) for each orthologous group of genes used in comparative genomic analyses are provided. <br> 4) <strong>Table_of_RER_data_for_examined_species.xlsx:</strong> A large table showing relative evolutionary rates measurements for each orthologous group of gene sequences (referenced against a Mus musculus transcript), for each species examined. Each species may be listed in multiple columns, reflecting different species representation for each orthologous group (i.e. representing cases in which the branch to a given leaf node originates at a different ancestral node due to sister species not represented in that alignment). <br> 5) <strong>Rhabdomys_pumilio_Princeton_asm1.0_preNCBI.fasta.gz:</strong> A copy of the genome assembly prior to any re-formatting that NCBI performs after upload.
DOI: 10.5281/zenodo.8139859
title: Raw results for medium- and high-dimensional settings

description: Raw results of the Best Subset Selection, Forward Stepwise, Lasso and Elastic-Net methods for medium- and high-dimensional settings.
DOI: 10.5281/zenodo.8139858
title: Raw results for medium- and high-dimensional settings

description: Raw results of the Best Subset Selection, Forward Stepwise, Lasso and Elastic-Net methods for medium- and high-dimensional settings.
DOI: 10.4121/88678f02-2a34-4452-8534-6361fc34d06b.v1
title: Data underlying the publication: Direct numerical simulation of turbulent open channel flow

description: ==============================================================================DNS DATA OF TURBULENT CLOSED AND OPEN CHANNEL FLOWIN BOXES OF Lx/h = 12pi, Lz/h = 4pi FOR Re_tau = 200,400,600,900 ==============================================================================Authors: C. Bauer, Y. Sakai & M. Uhlmann correspondence: christian.bauer@dlr.deReference: <em>Direct numerical simulation of turbulent open channel flow: Streamwise turbulence intensity scaling and its relation to large-scale coherent motions,</em> proceedings of the 10th iTi conference on turbulence, 2023 Numerical Method: Kim, Moin & Moser, 1987, J. Fluid Mech. vol 177, 133-166 ---------------------------------------------------------------------------------------------------------------------------- The data was obtained from direct numerical simulations of open and closed channel flow using a pseudo-spectral method which solves the wall-normal velocity/vorticity formulation of the Navier-Stokes equation introduced by Kim et al (1987). The flow domain contains Nx*Ny*Nz grid points with equidistant grid spacing in x and z direction and a Chebyshev-Gauss-Lobatto (CGL) grid in y direction. Note that the open channel flow simulations feature a grid refinement towards both the no-slip and the free-slip boundary condition.----------------------------------------------------------------------------------------------------------------------------For detailed information see data-sheet-ocf.pdf and data-sheet-ccf.pdf
DOI: 10.25345/c5nv99m9k
title: MassIVE MSV000092427 - untargeted metabolomics with Synechococcus elongatus PCC 7942 and mutant of a PII like protein
title: Untargeted metabolomics with Synechococcus elongatus PCC 7942 and delta cutA::kan deletion strain. Cells were harvested in exponential and stationary phase. Cell pellets were extracted with 20% MeOH, dried, and resuspended in 50% MeOH + DMSO.
DOI: 10.5281/zenodo.8141435
title: H2020 DeepCube UC2: Climate Induced Migration in Africa Public Datacube

description: This is the public datacube for UC2 climate induced migration in Africa (2015-2023) The input data includes varied data sources, environmental and climatic variables from Earth Observation data and relevant socioeconomic data sources accounting for the main drivers of drought displacement in Somalia. The Earth Observation data cube includes variables from ERA5 Land such as 2m Temperature, Potential Evaporation, Total Precipitation and the Volumetric soil water layers, the ESA CCI land cover map and the precipitation dataset captured from Climate Hazards Center InfraRed Precipitation with Station data (CHIRPS). The precipitation data from CHIRPS and the Potential Evaporation from ERA5 are used to compute the Standardized Precipitation and Evaporation Index (SPEI) that is a robust indicator for drought conditions accounting for both precipitation and temperature extremes. Regarding socioeconomic sources, the food security dimension is represented by market prices variables in different local markets like the price of livestock (for instance, Cattle, Camel, etc.) and harvest products (e.g., wheat, rice, maize, etc.). We also include the violent conflict data captured from the Armed Conflict Location & Event Data Project (ACLED) given the close link existing between droughts and conflict in Somalia. Finally, the dataset of Internal Displacement Somalia is obtained via the United Nations High Commissioner for Refugees (UNHCR) Protection & Return Monitoring Network (PRMN).
DOI: 10.5281/zenodo.8141436
title: H2020 DeepCube UC2: Climate Induced Migration in Africa Public Datacube

description: This is the public datacube for UC2 climate induced migration in Africa (2015-2023) The input data includes varied data sources, environmental and climatic variables from Earth Observation data and relevant socioeconomic data sources accounting for the main drivers of drought displacement in Somalia. The Earth Observation data cube includes variables from ERA5 Land such as 2m Temperature, Potential Evaporation, Total Precipitation and the Volumetric soil water layers, the ESA CCI land cover map and the precipitation dataset captured from Climate Hazards Center InfraRed Precipitation with Station data (CHIRPS). The precipitation data from CHIRPS and the Potential Evaporation from ERA5 are used to compute the Standardized Precipitation and Evaporation Index (SPEI) that is a robust indicator for drought conditions accounting for both precipitation and temperature extremes. Regarding socioeconomic sources, the food security dimension is represented by market prices variables in different local markets like the price of livestock (for instance, Cattle, Camel, etc.) and harvest products (e.g., wheat, rice, maize, etc.). We also include the violent conflict data captured from the Armed Conflict Location & Event Data Project (ACLED) given the close link existing between droughts and conflict in Somalia. Finally, the dataset of Internal Displacement Somalia is obtained via the United Nations High Commissioner for Refugees (UNHCR) Protection & Return Monitoring Network (PRMN).
DOI: 10.5281/zenodo.7485725
title: Datasets for "Observation of universal Hall response in strongly interacting Fermions"

description: This submission includes the datasets shown in the figures of journal article "Observation of universal Hall response in strongly interacting Fermions" by T.-W. Zhou et al., Science (2023). The naming of the files corresponds to the figure numbering in the published article:<br> FIG-x for figures in the main text<br> FIG-Sxx for figures in the Supplementary Materials
DOI: 10.5281/zenodo.7485724
title: Datasets for "Observation of universal Hall response in strongly interacting Fermions"

description: This submission includes the datasets shown in the figures of journal article "Observation of universal Hall response in strongly interacting Fermions" by T.-W. Zhou et al., Science (2023). The naming of the files corresponds to the figure numbering in the published article:<br> FIG-x for figures in the main text<br> FIG-Sxx for figures in the Supplementary Materials
DOI: 10.5281/zenodo.8141526
title: Presorted BraTS2021 dataset

description: The BraTS2021 dataset, an open-source collection of multimodal brain tumor MRI scans, is used in this research. Specifically, we included only the T1 and T2 weighted NIfTI files from this dataset, which provide diverse representations of brain anatomy and tumor pathology. These files facilitate the development of robust models for medical image translation in the context of our research paper and the associated code repository.
DOI: 10.5281/zenodo.8141525
title: Presorted BraTS2021 dataset

description: The BraTS2021 dataset, an open-source collection of multimodal brain tumor MRI scans, is used in this research. Specifically, we included only the T1 and T2 weighted NIfTI files from this dataset, which provide diverse representations of brain anatomy and tumor pathology. These files facilitate the development of robust models for medical image translation in the context of our research paper and the associated code repository.
DOI: 10.5281/zenodo.18578
title: Ore 2015 Reasoner Competition Corpus

description: This is the OWL Reasoner Evaluation Workshop Competition Dataset. This dataset contains the competition corpus of the ORE competition 2015. The files are intended purely for use in reasoner benchmarking activities. The open access extends only to this purpose. All individual ontologies in the dataset have their own license restrictions which still apply when a use other than reasoner benchmarking is intended. If you are the copyright holder of one of the ontologies in the set and want your ontology removed, please contact us here (http://owl.cs.manchester.ac.uk/contact/).

Details about its creation can be found in the following link.

http://mowlrepo.cs.manchester.ac.uk/datasets/ore-2015-reasoner-competition-dataset/
DOI: 10.5281/zenodo.7375461
title: General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase - Evaluation Material

description: In this archive, we provide the (already normalized and translated) rule sets that we used for the evaluation<br> of MFA, DMFA, DMFA2, MFC, and DMFC in our paper "General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase" at AAAI 2023.We also provide the raw result files and some basic scripts that we used<br> to produce and count the results.<br> Due to licensing restrictions we are not allowed to include all of our evaluation material.<br> <br> Please refer to the provided README.md for more information.
description: Lukas is funded by Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) in project 389792660 (TRR 248, Center for Perspicuous Systems, https://www.perspicuous-computing.science/), by the Bundesministerium für Bildung und Forschung (BMBF, Federal Ministry of Education and Research) under European ITEA project 01IS21084 (InnoSale, Innovating Sales and Planning of Complex Industrial Products Exploiting Artificial Intelligence, https://www.innosale.eu/), by BMBF and DAAD (German Academic Exchange Service) in project 57616814 (SECAI, School of Embedded and Composite AI, https://secai.org), and by the Center for Advancing Electronics Dresden (cfaed). David is funded by the ANR project CQFD (ANR-18-CE23-0003).
DOI: 10.5281/zenodo.7375462
title: General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase - Evaluation Material

description: In this archive, we provide the (already normalized and translated) rule sets that we used for the evaluation<br> of MFA, DMFA, DMFA2, MFC, and DMFC in our paper "General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase" at AAAI 2023.We also provide the raw result files and some basic scripts that we used<br> to produce and count the results.<br> Due to licensing restrictions we are not allowed to include all of our evaluation material.<br> <br> Please refer to the provided README.md for more information.
description: Lukas is funded by Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) in project 389792660 (TRR 248, Center for Perspicuous Systems, https://www.perspicuous-computing.science/), by the Bundesministerium für Bildung und Forschung (BMBF, Federal Ministry of Education and Research) under European ITEA project 01IS21084 (InnoSale, Innovating Sales and Planning of Complex Industrial Products Exploiting Artificial Intelligence, https://www.innosale.eu/), by BMBF and DAAD (German Academic Exchange Service) in project 57616814 (SECAI, School of Embedded and Composite AI, https://secai.org), and by the Center for Advancing Electronics Dresden (cfaed). David is funded by the ANR project CQFD (ANR-18-CE23-0003).
DOI: 10.5517/ccdc.csd.cc2fmcgx
title: CCDC 2252939: Experimental Crystal Structure Determination

description: Related Article: qinghe wu|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fmchy
title: CCDC 2252940: Experimental Crystal Structure Determination

description: Related Article: qinghe wu|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23283086.v1
title: Acute stress induces long-term metabolic, functional and structural remodeling of the heart

description: Takotsubo syndrome, a stress-induced cardiomyopathy mimicking an acute coronary syndrome but formerly considered a benign reversible disease, increases the risk of heart failure and cardiac death. Here, the authors show that the function and structure of the heart engage in a continuous deterioration after acute stress and link this snowball effect to deviated control of cardiac metabolism.
DOI: 10.6084/m9.figshare.23283086
title: Acute stress induces long-term metabolic, functional and structural remodeling of the heart

description: Takotsubo syndrome, a stress-induced cardiomyopathy mimicking an acute coronary syndrome but formerly considered a benign reversible disease, increases the risk of heart failure and cardiac death. Here, the authors show that the function and structure of the heart engage in a continuous deterioration after acute stress and link this snowball effect to deviated control of cardiac metabolism.
DOI: 10.6084/m9.figshare.23056121.v1
title: Mixed strain pathogen populations accelerate the evolution of antibiotic resistance in patients

description: Source data file for "Mixed strain pathogen populations accelerate the evolution of antibiotic resistance in patients"
DOI: 10.6084/m9.figshare.23056121
title: Mixed strain pathogen populations accelerate the evolution of antibiotic resistance in patients

description: Source data file for "Mixed strain pathogen populations accelerate the evolution of antibiotic resistance in patients"
DOI: 10.6084/m9.figshare.22782755.v1
title: External globus pallidus input to the dorsal striatum regulates habitual seeking behavior

description: This file include all the raw data.
DOI: 10.6084/m9.figshare.22782755
title: External globus pallidus input to the dorsal striatum regulates habitual seeking behavior

description: This file include all the raw data.
DOI: 10.6084/m9.figshare.22978535.v1
title: Temperature-Pressure Phase Diagram of Confined Monolayer Water/Ice: Machine-learning Force Field at the First-Principles Accuracy

description: Data of 2D ice structural, machine-learning force field
DOI: 10.6084/m9.figshare.22978535
title: Temperature-Pressure Phase Diagram of Confined Monolayer Water/Ice: Machine-learning Force Field at the First-Principles Accuracy

description: Data of 2D ice structural, machine-learning force field
DOI: 10.6084/m9.figshare.23559900.v1
title: Data set

description: The source data for all the editable graphs in the manuscript is loaded into this file