cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.060b1/18
title: file 18 - x1 data for MasterBayes cr2 only

description: Microsatellite genotypes for markers residing on chromosome two observed in the experimental N = 10 x 1 population formatted for the MasterBayes package in R. This file must be in the working directory of R for many of the simulations above to run.
DOI: 10.5061/dryad.20152/1
title: Reflectance spectra of S. globosum colour morphs

description: Average percentage reflectance spectra measured from three different standardised locations within the colour area of the opisthosoma of each spider from the three colour morphs.
DOI: 10.5061/dryad.20152/2
title: Data of heritability of S. globosum colour morphs

description: Number of daughters of each colour morph, males, and undetermined offspring scored from each clutch produced by mothers of known colour morphs in the laboratory.
DOI: 10.5061/dryad.20152/3
title: Data on life history traits of S. globosum colour morphs

description: First sheet contains the data of size and weight of individuals of the three colour morphs. The second sheet shows the data on the behaviour of the three morphs in the field: time spent in a patch, time spent on a flower, and number of flowers occupied. The third sheet shows the data on the probability of an individual found in a habitat patch at the beginning of the survey to be missing at the end for each morph (1 = missing, 0 = not missing). The fourth sheet shows the number of females from each morph that produced one, two, and three clutches of eggs in the laboratory. The fifth sheet contains the data on the number of clutch and the days to hatching for each morph. The sixth sheet shows cephalothorax length (for those females that were measured) and clutch size for each morph. The seventh sheet contains the data of mother cephalothorax length, and individual spiderling weight and length for each mother morph. The eighth sheet shows the data of mother cephalothorax length and spiderling survival for each mother colour morph (1 = survived, 0 = not survived).
DOI: 10.5061/dryad.37mc0/1
title: House sparrow longitudinal data

description: The dataset contains individual based data on individual survival, reproduction and morphology over the years 2002 to 2007 in an island house sparrow population.
DOI: 10.5061/dryad.39mc5/1
title: StrictClockGamma_50mil

description: Beast .xml file for Strict Clock analysis with 50 million generations
DOI: 10.5061/dryad.47574/1
title: Fly Survival

description: Fly and Wasp survival from the experiment setting.
DOI: 10.5061/dryad.47574/2
title: Oviposition

description: Differential oviposition.
DOI: 10.5061/dryad.47574/3
title: WaspGrowth
DOI: 10.5061/dryad.4cq60/1
title: 12S Testudo hermanni europe

description: mtDNA 12S sequences and frequecies in European populations of Testudo hermanni
DOI: 10.5061/dryad.4dt7c/1
title: ChariDworkinPLoSGenetics2013
DOI: 10.5061/dryad.4q2f3/3
title: Raw LMA data

description: This file contains all the raw elevation-LMA data extracted from each study in the meta-analysis. Column titles: elevation, the elevation in m above sea level at the data point; lma, the LMA value in g m^-2 at the data point; study, a numeric identifier for the study that the data point came from; latitude; the mean latitude for the study; name, a unique identifier (author's name) for the study; lat.lapse, the latitude to the nearest degree of the data point; long.lapse, the longitude to the nearest degree of the data point.
DOI: 10.5061/dryad.4q2f3/4
title: Raw Narea data

description: This file contains all the raw elevation-Narea data extracted from each study in the meta-analysis. Column titles: elevation, the elevation in m above sea level at the data point; narea, the Narea value in g m^-2 at the data point; study, a numeric identifier for the study that the data point came from; latitude; the mean latitude for the study; name, a unique identifier (author's name) for the study; lat.lapse, the latitude to the nearest degree of the data point; long.lapse, the longitude to the nearest degree of the data point.
DOI: 10.5061/dryad.4q2f3/5
title: Raw Nmass data

description: This file contains all the raw elevation-Nmass data extracted from each study in the meta-analysis. Column titles: elevation, the elevation in m above sea level at the data point; nmass, the Nmass value (percentage N by mass) at the data point; study, a numeric identifier for the study that the data point came from; latitude; the mean latitude for the study; name, a unique identifier (author's name) for the study; lat.lapse, the latitude to the nearest degree of the data point; long.lapse, the longitude to the nearest degree of the data point.
DOI: 10.5061/dryad.4q2f3/6
title: Summary information for studies in common-garden review

description: This file contains all the summary information from studies found in a literature search for common-garden or reciprocal-transplant experiments testing the hypothesis that there is a genetic basis to elevational or latitudinal variation in LMA, Nmass, or Narea within a species of plant. Column titles: STUDY NAME; author's last name and year published (see Appendix S2); Altitude common garden, whether the gradient is elevational; n. altitudes or latitudes, how many sites were sampled; Latitude common garden, whether the gradient is latitudinal; other, details if necessary; Trait(s), which traits were sampled; Genetic basis, whether statistically significant genetic basis was found; Effect size type, what statistical test/model was used; LMA, Nm, and Na, which of the 3 traits were sampled.
DOI: 10.5061/dryad.4q2f3/7
title: R functions to reproduce all analyses in paper

description: R file with all functions used in the accompanying R script file (see comments in body of file).
DOI: 10.5061/dryad.4q2f3/8
title: R scripts to reproduce all analyses in paper

description: R file that when run will reproduce all analyses in the paper, using functions in the accompanying file (see comments in body of file).
DOI: 10.5061/dryad.4q2f3/9
title: README describing all accompanying files
DOI: 10.5061/dryad.648k2/1
title: All data from N. bryanti/lepida hybrid zone

description: Each tab of the data file includes a distinct data set including model and simulation results and data from analyses of isotopes, survivorship, dispersal, and vegetation.  See ReadMe file.
DOI: 10.5061/dryad.675tt/1
title: hemoglobin proteins_lake whitefish

description: Summary of hemoglobin protein component variation in dwarf and normal lake whitefish from three lakes
DOI: 10.5061/dryad.6sg4q/1
title: Culumber&Rosenthal_anyFishproject

description: This zip file contains the project files (tps, path, and texture files) used in making animations for the associated manuscript.
DOI: 10.5061/dryad.72vq2/1
title: APPENDIX 1

description: The 127 coded characters used in cladistic analyses of genera assigned to families Monticuliporidae and Mesotrypidae. These characters were cladistically informative (i.e., were synapomorphic) having states shared by in-group genera. This is a partial listing of 267 characters developed from the following sources (R. L. Anstey, personal communication):  Anstey (1978), Anstey (1990), Anstey and Pachut 1995 (Appendices A and B), Anstey and Perry (1970, 1973), Blake and Snyder (1987), Corneliussen and Perry (1973), Cuffey and Blake (1991), Hageman (1991), Hickey (1988), Key (1990), McKinney (1977, 2000), Pachut and Anstey (1984), Pachut, Anstey, and Horowitz (1994), Prezbindowski and Anstey (1978), Spearing (1998), Tang and Cuffey (1998), and Taylor and Weedon (2000). Characters that could not be evaluated within a genus were coded using a question mark.
DOI: 10.5061/dryad.72vq2/2
title: APPENDIX 2

description: Character states for 127 morphologic characters used in cladistics analysis. Characters, and character states, are defined in Appendix 1. Question marks reflect uncertain character state codes. The genus Goryunovia was utilized as an outgroup.
DOI: 10.5061/dryad.72vq2/3
title: APPENDIX 3

description: Apomorphy listing, by cladogram node, for the heuristic analysis that was reweighted by maximum value of the rescaled consistency index (RC). RC ranges between 0.0 and 1.0 and is a (directly) proportional measure of a character’s fit to a tree. Triangles (►) indicate changes occurring in every possible tree reconstruction, whereas arrows (→) indicate changes in this reweighted analysis, and possibly in others, but not in all analyses.
DOI: 10.5061/dryad.7341c/2
title: Data for Lake Alexandrina
DOI: 10.5061/dryad.7341c/3
title: Coordinate for 15 lakes
DOI: 10.5061/dryad.7341c/4
title: Distance for sites in Lake Alexandrina
DOI: 10.5061/dryad.755b5/1
title: SNPs validated with different MAC (2 or 3) and a sequencing depth of 10 or 20X

description: This archive contains three types of files with extensions '.n', '.y' and '.alleles'. '.n' files list for each library the number of reads associated at each SNP position. '.y' files list the number of times a SNP is detected. '.alleles' files give the name of the contig displaying a given SNP, then the position of the SNP from the restriction site, the total number of reads for the whole dataset, the count of the minor allele, the count of the major allele, and the two possible nucleotides encountered at this position
DOI: 10.5061/dryad.755b5/2
title: Fasta file listing contigs
DOI: 10.5061/dryad.75s9s/1
title: Cheruvelil EPA-NLAPP 6-state lake-landscape database

description: Lake data were compiled for six U.S. states: Maine (N=~593), New Hampshire (N=~651), Ohio (N=~55), Iowa (N=~117), Michigan (N=~557), and Wisconsin (N=~347). Lake water chemistry were sampled from the epilimnion. Data were collected from databases maintained by state agencies responsible for monitoring lakes under the Federal Clean Water Act, which requires standard procedures and quality assurance and quality control protocols. Lakes with surface area ≥ 1 ha and maximum depth ≥ 2 m were included in the dataset. Each lake was assigned a unique identifier. We collected data on LAKES (chemistry, clarity and depth); NATURAL LANDSCAPE FEATURES (catchment area, lake elevation, and features obtained from GIS (hydrology, runoff, precip, baseflow); and HUMAN IMPACT FEATURES (Land use/cover (NLCD) in 500m buffer around lakes, roads in 500m buffer, human census data within the smallest unit available (county subdivision). We also quantified land cover, land use, groundwater hydrology, and several other geographic variables within the Ecological Drainage Unit (EDU) region. Lake data came from the following state agency sources: Maine Department of Environmental Protection, Maine Department of Inland Fisheries and Wildlife’s Lake Survey table (1/21/03); New Hampshire Department of Environmental Services; Michigan Department of Environmental Quality; Wisconsin Department of Natural Resources; Ohio Environmental Protection Agency; and Iowa State University Limnology Laboratory (Joint Iowa DNR / ISU Project). The purpose of the dataset was to investigate lake and landscape controls on lake water chemistry across broad geographic regions.
DOI: 10.5061/dryad.7n344/1
title: aligned_ALO_groel_fasta_sequences

description: Bacterial GroEL aligned sequences
DOI: 10.5061/dryad.7n344/2
title: ALO_fbaA_tree_file

description: Bacterial fbaA ML tree file
DOI: 10.5061/dryad.7n344/3
title: aligned_ALO_fbaA_fasta_sequences

description: Bacterial fbaA aligned fasta sequences
DOI: 10.5061/dryad.7n344/4
title: ALO_GroEL_tree_file

description: Bacterial GroEL ML tree file
DOI: 10.5061/dryad.7n344/5
title: aligned_ALO_ftsK_fasta_sequences

description: Bacterial ftsK aligned fasta sequences
DOI: 10.5061/dryad.7n344/6
title: ALO_ftsK_tree_file

description: Bacterial FtsK ML tree file
DOI: 10.5061/dryad.8140s/1
title: data package

description: Every file provides the data for the respective life-history trait or for the dispersal distances. Header lines describe the content of every column. Generally the first columns are explanatory variables and the last column(s) represent(s) the data of interest.
DOI: 10.5061/dryad.84m54/11
title: Part 2 of volumetric data from a micro-CT scan of the anterior end of Syllis gracilis
DOI: 10.5061/dryad.bb33v/2
title: Script of program to simulate HFC in family-structured samples

description: This is the script for our simulations (HFC in family structured samples).
DOI: 10.5061/dryad.bc14v/1
title: Grevillea macleayana Seedbank Study Microsatellite Genotypes

description: 10-locus microsatellite genotypes for inter-fire adults and seedlings emerging after fire stimulated germination in 2001,  for two stands (Lower and Upper) of Grevillea macleayana.  The post-fire survival of the seedlings was recorded in 2007, 2009, and 2012.
DOI: 10.5061/dryad.d2vh0/1
title: To_Dryad_age

description: Age (years) and standard length (mm) of individuals from 3 Baltic, 3 lake and 2 pond populations.
DOI: 10.5061/dryad.g6r70/1
title: GammaSpot

description: R function. Has one argument, a phylogenetic tree of class phylo. Returns a vector with 2 elements. The first is the subtree with the lowest Gamma statistic. The second is an ordered vector of subtree Gamma statistics.
DOI: 10.5061/dryad.g6r70/2
title: Monotropoideae_Arbutoideae_chrono

description: BEAST estimate of relationships and divergence times among species of parasitic Monotropoideae species and autotrophic Arbutoideae species.
DOI: 10.5061/dryad.g6r70/7
title: Ericales_partition

description: File to specify data partitions for RAxML. The DNA sequence data was partitioned by genome and codon position.
DOI: 10.5061/dryad.h65f4/10
title: Data for RSF analysis of wolf

description: Data used to model the relative probability of occurrence of wolf in winter as a function of features of the networks of its prey (Tables 5 and 6). Network features are provided at observed GPS locations and at random locations.
DOI: 10.5061/dryad.h65f4/11
title: Data for SSF analysis of wolf

description: Data used to model the relative probability of making steps for wolf in winter as a function of step length and features of the networks of its prey (Table 7). Covariates are provided at observed steps and at random steps.
DOI: 10.5061/dryad.h65f4/2
title: Data for compositional analysis of moose

description: Data used to characterize the land cover type of node of network for moose. Used proportions of various land cover types are estimated based on the observed GPS locations. Available proportions of various land cover types are calculated based on the 100% minimum convex polygon.
DOI: 10.5061/dryad.h65f4/3
title: Graph biological relevance

description: Data used to model the exponential relationship between the percentage of links in a given network and the percentage of observed inter-patch movements of caribou and moose that occurred between connected nodes for that individual, in a given year (2005-2009) (Figure 3).
DOI: 10.5061/dryad.h65f4/4
title: Data for conditional logistic regression for caribou

description: Data used to model the relative probability of used an inter-patch movement for caribou in winter as a function of network connectivity and landscape features (Tables 2 and 3). Covariates are provided at observed inter-patch movement and at available inter-patch movement.
DOI: 10.5061/dryad.h65f4/5
title: Data for conditional logistic regression for moose

description: Data used to model the relative probability of used an inter-patch movement for moose in winter as a function of network connectivity and landscape features (Tables 2 and 3). Covariates are provided at observed inter-patch movement and at available inter-patch movement.
DOI: 10.5061/dryad.h65f4/6
title: Data for mixed-effects Cox model for caribou

description: Data used to model the risk of patch departure for caribou in winter as a function of network connectivity and landscape features (Table 4).
DOI: 10.5061/dryad.h65f4/7
title: Data for mixed-effects Cox model for moose

description: Data used to model the risk of patch departure for moose in winter as a function of network connectivity and landscape features (Table 4).
DOI: 10.5061/dryad.h65f4/8
title: Data for RSF analysis of caribou

description: Data used to model the relative probability of occurrence of caribou in winter as a function of landscape features (Table 1). Landscape features (various land cover types and variation of elevation within a 50-m radius buffer) are provided at observed GPS locations and at random locations.
DOI: 10.5061/dryad.h65f4/9
title: Data for RSF analysis of moose

description: Data used to model the relative probability of occurrence of moose in winter as a function of landscape features (Table 1). Landscape features (various land cover types and variation of elevation within a 50-m radius buffer) are provided at observed GPS locations and at random locations.
DOI: 10.5061/dryad.hn356/1
title: MShelomi-BergmannInsectsReview.txt

description: This file contains the data from the systematic review "Where Are We Now? Bergmann’s Rule sensu lato in Insects" in American Naturalist by Matan Shelomi (matanshelomi@yahoo.com). The data was collected from articles listed in the citations of the associated article. The first column lists the author and year of each entry, which can be compared with the references list. In the column "Sex," M=Male, F=Female, B=both. Under "Organs Checked," PCA=Principle Components Analysis and CVA=Canonical Variate Analysis, with the numbers in parentheses being the number of components analyzed. Under "units," PC=principle components. Lat=Latitude (Range measured in arc degrees) and Alt=Altitude (Range measured in meters elevation). Under "Results," + = Bergmann Cline observed, - = Converse Bergmann Cline observed, 0 = No cline observed, with additional descriptions for non-linear clines.
DOI: 10.5061/dryad.j0k50/1
title: Phenotypic data and BMH1 genotype of the ancestral and evolved populations

description: Variation of nine life-history traits and four metabolic traits during an experimental evolution of six yeast strains in four different environments. Ancestral strains were phenotyped twice (a and b code). BMH1 genotypes were encoded 1 for the ancestral state and 2 for the mutated one.
DOI: 10.5061/dryad.k79m2/1
title: SeedPredationDataForDryad

description: The file contains data on the percent of seeds eaten by two seed predators and the mean cone traits of trees for two years, the number of cones depredated by the two seed predators for 150 trees at different elevations and the distance to the nearest cone-bearing tree, and tree density for high and low elevation transects
DOI: 10.5061/dryad.nh3d2/1
title: DataDescriptionRunemark

description: Describes the contents of the files submitted to Dryad
DOI: 10.5061/dryad.s7q3c/34
title: Data from Fig. S11cd
DOI: 10.5061/dryad.s7q3c/36
title: Data from Fig. S13bcd
DOI: 10.5061/dryad.s7q3c/37
title: Data from Fig. S13fgh
DOI: 10.5061/dryad.s7q3c/38
title: Data from Fig. S14cdef
DOI: 10.5061/dryad.s7q3c/39
title: Data from Fig. S15b
DOI: 10.5061/dryad.s7q3c/40
title: Data from Fig. S16bcde
DOI: 10.5061/dryad.s7q3c/41
title: Data from Fig. S17b
DOI: 10.5061/dryad.s7q3c/42
title: Data from Fig. S17c
DOI: 10.5061/dryad.s7q3c/43
title: Description of variables within data files
DOI: 10.5061/dryad.v82jf/3
title: Table S2

description: Behavioral responses of Rhagoletis pomonella flies from the western and eastern U.S. to synthetic host fruit volatile blends in flight tunnel assays.
DOI: 10.5061/dryad.vq6mp/2
title: Figure S1. Maximum clade credibility tree obtained from a BEAST analysis of the combined Euphorbia GDD dataset, showing the distribution of the 67 samples selected for trait analyses, from a total of 279 samples.

description: Maximum clade credibility tree obtained from a BEAST analysis of the combined Euphorbia GDD dataset, showing the distribution of the 67 samples selected for trait analyses, from a total of 279 samples. Black branches indicate parts of the larger phylogeny captured by our subsample (i.e., taxa for which multiple samples were available and whose monophyly was confirmed). Stars indicate the location of those 67 samples. Grey branches indicate parts of the larger phylogeny not captured by this subsample. The seven subclades emphasized in the text are labeled.
DOI: 10.5061/dryad.vq6mp/3
title: Figure S2. (a) Ordination diagram (b) and eigenvectors illustrating the loading of 19 Bioclim variables in PCA axis 1 vs. axis 2 space.

description: PCA ordination of bioclim data extracted for 67 taxa in Euphorbia sections Goniostema, Denisophorbia, and Deuterocalli.
DOI: 10.5061/dryad.vq6mp/4
title: Figure S3. (Lower panels) Evolution of the cactiform growth form mapped on the trimmed maximum clade credibility tree optimized in climate space, and (upper panels) predicted probability of the cactiform growth form, as a function of the same climate gradient.

description: Figure S3. (Lower panels) Evolution of the cactiform growth form mapped on the trimmed maximum clade credibility tree optimized in climate space, and (upper panels) predicted probability of the cactiform growth form, as a function of the same climate gradient. a) Lower panel: stochastic character mapping of the cactiform growth form on the phylogeny optimized with respect to mean annual temperature (MAT). Upper panel: predicted probability of the cactiform growth form, as a function of MAT. b) As in a, but the x-axis is mean annual precipitation (MAP). The upper panel shows the predictions from three models: MAP as a linear term only, MAP as linear and quadratic terms, and the latter model after removing two outliers, E. lophogona and E. boissieri. c) Stochastic character mapping of the cactiform growth form on the same tree. This character reconstruction matches panel b, whereas an alternative possible history of the evolution of the cactiform growth form is shown in panel a.
DOI: 10.5061/dryad.vq6mp/5
title: Genbank numbers and voucher information for samples used in this study.

description: Genbank numbers and voucher information for samples used in this study.
DOI: 10.5061/dryad.060b1/19
title: file 19 - x1 data for MasterBayes cr3 only

description: Microsatellite genotypes for markers residing on chromosome three observed in the experimental N = 10 x 1 population formatted for the MasterBayes package in R. This file must be in the working directory of R for many of the simulations above to run.
DOI: 10.5061/dryad.060b1/20
title: file 20 - x5 data for MasterBayes cr2 only

description: Microsatellite genotypes for markers residing on chromosome two observed in the experimental N = 10 x 5 population formatted for the MasterBayes package in R. This file must be in the working directory of R for many of the simulations above to run.
DOI: 10.5061/dryad.060b1/21
title: file 21 - x5 data for MasterBayes cr3 only

description: Microsatellite genotypes for markers residing on chromosome three observed in the experimental N = 10 x 5 population formatted for the MasterBayes package in R. This file must be in the working directory of R for many of the simulations above to run.
DOI: 10.5061/dryad.060b1/22
title: file 22 - x0 data for MasterBayes 5percent nulls

description: Microsatellite genotypes observed in the experimental control population  formatted for the MasterBayes package in R with null alleles artificially encoded at a frequency of 0.05. This file must be in the working directory of R for many of the simulations above to run.
DOI: 10.5061/dryad.060b1/23
title: file 23 - pedigree

description: Pedigree, formatted for the pedantics package in R, which is the same as that which was used to generate individuals of varying inbreeding and relatedness in our experimental populations. This file must be in the working directory of R for many of the simulations above to run.
DOI: 10.5061/dryad.060b1/24
title: file 24 - pedigree relatedness

description: List of pairwise coefficient of relatedness between possible combination of final generation individuals in the pedigree. This file must be in the working directory of R for many of the simulations above to run.
DOI: 10.5061/dryad.060b1/25
title: file 25 - expected_f

description: List of inbreeding coefficients for each final generation individual in the pedigree.