cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/qkgg-th81
title:  Diagnostics of Electron Energy Distribution Function (EEDF) using Optical Emission Spectroscopy (OES) in CF4/O2 Plasma

description: As semiconductor devices have become increasingly miniaturized, the ability to control very small Critical Dimensions (CDs) during the etching process has become crucial through controlled plasma processes. Hence, diagnosing plasma and reflecting this in the process to enhance yield is of paramount importance. Typically, a Single Langmuir Probe (SLP) is utilized for plasma diagnostics. While electrical probes offer the advantage of high accuracy, their invasive nature when diagnosing through the viewport can distort the plasma and lead to issues in signal acquisition due to deposition on the probe tip. On the other hand, Optical Emission Spectroscopy (OES), as a non-invasive diagnostic method, does not alter the plasma during measurement, offering a clear advantage over SLP, although it presents challenges in understanding the physical significance of intensity variations across wavelengths. Despite these drawbacks, the accurate measurement of plasma parameters (such as electron temperature Te, electron density ne, Electron Energy Distribution Function EEDF, plasma potential Vp, floating potential Vf, etc.) using SLP is crucial for diagnosing changes in the plasma. Therefore, this study aims to develop a model that can predict plasma parameters measured by SLP using OES measurement data, thereby enabling virtual measurement of plasma. In this research, diagnostic data from OES and SLP are acquired using a 6-inch Inductively Coupled Plasma (ICP) system. Furthermore, by collecting and analyzing data from simultaneous measurements of SLP and OES in a 6-inch ICP etcher, this study seeks to establish a Virtual Measurement (VM) model that can diagnose plasma parameters using OES wavelength-specific intensity and line ratio data as inputs.
DOI: 10.6084/m9.figshare.25441744
title: Franzelin et al. Source Table.xlsx

description: <b>Epigenetic mechanisms of episodic spatial memory in mice</b>Authors: Andreas Franzelin, Paul J. Lamothe-Molina, Christine E. Gee, Andrey Formozov, Eric R. Schreiter, Fabio Morellini, Thomas G. Oertner<sup>The spreadsheet contains the numerical data of all figures, main and supplementary.</sup>
DOI: 10.6084/m9.figshare.25441744.v1
title: Franzelin et al. Source Table.xlsx

description: <b>Epigenetic mechanisms of episodic spatial memory in mice</b>Authors: Andreas Franzelin, Paul J. Lamothe-Molina, Christine E. Gee, Andrey Formozov, Eric R. Schreiter, Fabio Morellini, Thomas G. Oertner<sup>The spreadsheet contains the numerical data of all figures, main and supplementary.</sup>
DOI: 10.18419/darus-2790/545
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.5281/zenodo.10842708
title: Growth of wild cucumber (Echinocystis lobata) in three variants of support (5, 20, 50 cm) and shoot geometry

description: The experiments included three variants of support: 5 cm, 20 cm, and 50 cm. The data was collected in the years 2020-2023. After developing their first pair of mature leaves, when the plants were about 20-35 cm in length, the plants were photographed. The shutter was released every 15 minutes. The resulting images were combined into a 10 fps video. The following were used for the analysis: 13 recordings of the 5 cm variant and 12 recordings of the 20 and 50 cm variants.

Next, an analysis was performed based on the resulting video using Tracker for kinetic analysis of video objects. The recordings were used to measure the plant growth parameters. The tape measure and point mass tools were used to determine the length of the shoots and to change the position of the apex relative to the areas of the X- and Y-axis photographed over time. To compensate for this, a trend line was drawn (polynomial of the 2nd degree, due to the very good fit, R2 = 0,975–0,995) and new plant length parameters were calculated. 

To enhance the research, cross-sections of the shoots of ten plants were scanned. Samples were taken every 5 cm from the base of the plant. Using ImageJ the following parameters were measured: shoot cross-sectional area, tissue area, perimeter, and circularity.
DOI: 10.5281/zenodo.10842709
title: Growth of wild cucumber (Echinocystis lobata) in three variants of support (5, 20, 50 cm) and shoot geometry

description: The experiments included three variants of support: 5 cm, 20 cm, and 50 cm. The data was collected in the years 2020-2023. After developing their first pair of mature leaves, when the plants were about 20-35 cm in length, the plants were photographed. The shutter was released every 15 minutes. The resulting images were combined into a 10 fps video. The following were used for the analysis: 13 recordings of the 5 cm variant and 12 recordings of the 20 and 50 cm variants.

Next, an analysis was performed based on the resulting video using Tracker for kinetic analysis of video objects. The recordings were used to measure the plant growth parameters. The tape measure and point mass tools were used to determine the length of the shoots and to change the position of the apex relative to the areas of the X- and Y-axis photographed over time. To compensate for this, a trend line was drawn (polynomial of the 2nd degree, due to the very good fit, R2 = 0,975–0,995) and new plant length parameters were calculated. 

To enhance the research, cross-sections of the shoots of ten plants were scanned. Samples were taken every 5 cm from the base of the plant. Using ImageJ the following parameters were measured: shoot cross-sectional area, tissue area, perimeter, and circularity.
DOI: 10.18419/darus-2790/546
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.18419/darus-2790/547
title: param.nml

description: :unav
DOI: 10.18419/darus-2790/548
title: param.nml

description: :unav
DOI: 10.18419/darus-2790/549
title: param.nml

description: :unav
DOI: 10.18419/darus-2790/550
title: plot.dat_selalib_sg_9200_0.txt

description: :unav
DOI: 10.5281/zenodo.10784710
title: BotHawk: GitHub Bot Account Detection Dataset

description: The "BotHawk: GitHub Bot Account Detection Dataset" is a specialized resource developed for the research and development community focused on identifying and understanding bot accounts within the GitHub ecosystem. This comprehensive dataset offers an in-depth look into the behaviors, contributions, and patterns of bot accounts, distinguishing them from human user activities on GitHub.

Designed to enhance the accuracy and efficiency of bot detection algorithms, the BotHawk Dataset encompasses a variety of features, including commit history, issue participation, pull request activities, and other interaction metrics specific to GitHub. It provides an invaluable foundation for developing machine learning models capable of distinguishing between bot-generated and human-generated activities, contributing to more secure and trustworthy interactions within the GitHub platform.

This dataset not only serves as a tool for academic research in cybersecurity, machine learning, and software engineering but also offers practical applications for developers and platform administrators seeking to improve the health of their projects by filtering out bot-based noise and manipulation. The BotHawk dataset is instrumental in advancing our comprehension of bot dynamics within the GitHub ecosystem, supporting the broader objective of fostering a secure, transparent, and collaborative open-source community.
DOI: 10.5281/zenodo.10784711
title: BotHawk: GitHub Bot Account Detection Dataset

description: The "BotHawk: GitHub Bot Account Detection Dataset" is a specialized resource developed for the research and development community focused on identifying and understanding bot accounts within the GitHub ecosystem. This comprehensive dataset offers an in-depth look into the behaviors, contributions, and patterns of bot accounts, distinguishing them from human user activities on GitHub.

Designed to enhance the accuracy and efficiency of bot detection algorithms, the BotHawk Dataset encompasses a variety of features, including commit history, issue participation, pull request activities, and other interaction metrics specific to GitHub. It provides an invaluable foundation for developing machine learning models capable of distinguishing between bot-generated and human-generated activities, contributing to more secure and trustworthy interactions within the GitHub platform.

This dataset not only serves as a tool for academic research in cybersecurity, machine learning, and software engineering but also offers practical applications for developers and platform administrators seeking to improve the health of their projects by filtering out bot-based noise and manipulation. The BotHawk dataset is instrumental in advancing our comprehension of bot dynamics within the GitHub ecosystem, supporting the broader objective of fostering a secure, transparent, and collaborative open-source community.
DOI: 10.18419/darus-2790/551
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.18419/darus-2790/552
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/553
title: vp_B2_3d3v.h5

description: :unav
DOI: 10.18419/darus-2790/554
title: plot.dat_selalib_sg_12500_0.txt

description: :unav
DOI: 10.18419/darus-2790/555
title: param.nml

description: :unav
DOI: 10.18419/darus-2790/556
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/557
title: plot.dat_selalib_sg_14300_0.txt

description: :unav
DOI: 10.18419/darus-2790/558
title: plot.dat_selalib_sg_10900_0.txt

description: :unav
DOI: 10.18419/darus-2790/559
title: param.nml

description: :unav
DOI: 10.18419/darus-2790/560
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/561
title: plot.dat_selalib_sg_10100_0.txt

description: :unav
DOI: 10.18419/darus-2790/562
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.18419/darus-2790/563
title: plot.dat_selalib_sg_18000_0.txt

description: :unav
DOI: 10.18419/darus-2790/564
title: plot.dat_selalib_sg_7700_0.txt

description: :unav
DOI: 10.18419/darus-2790/565
title: plot.dat_selalib_sg_16900_0.txt

description: :unav
DOI: 10.18419/darus-2790/566
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/567
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.18419/darus-2790/568
title: plot.dat_selalib_sg_10400_0.txt

description: :unav
DOI: 10.18419/darus-2790/569
title: plot.dat_selalib_sg_17600_0.txt

description: :unav
DOI: 10.18419/darus-2790/570
title: param.nml

description: :unav
DOI: 10.18419/darus-2790/571
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.18419/darus-2790/572
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/573
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.18419/darus-2790/574
title: vp_B2_3d3v.h5

description: :unav
DOI: 10.18419/darus-2790/575
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.18419/darus-2790/576
title: plot.dat_selalib_sg_4200_0.txt

description: :unav
DOI: 10.18419/darus-2790/577
title: vp_B2_3d3v.h5

description: :unav
DOI: 10.18419/darus-2790/578
title: plot.dat_selalib_sg_200_0.txt

description: :unav
DOI: 10.18419/darus-2790/579
title: plot.dat_selalib_sg_1300_0.txt

description: :unav
DOI: 10.5281/zenodo.10839126
title: Simulation Dataset: The antimicrobial fibupeptide lugdunin forms water-filled channel structures in lipid membranes

description: The Zenodo repository contains data to the molecular dynamics simulations in the following manuscript: 

The antimicrobial fibupeptide lugdunin forms water-filled channel structures in lipid membranes 

by

Dominik Ruppelt, Marius F. W. Trollmann, Taulant Dema, Sebastian N. Wirtz, Hendrik Flegel, Sophia Mönnikes, Stephanie Grond, Rainer A. Böckmann*, Claudia Steinem*

0) Lugdunin-parameterization

1) Lugdunin-stack-stability

    - trans_configuration.gro: Artifical lugdunin stack in trans configuration (see SFig. 23 a).

    - gauche_configuration.gro: Artifical lugdunin stack in gauche configuration (see SFig. 23 b)

    - DMPC

    - DOPC

    - POPC

    - POPC_CHOL

2) Partitioning-of-Lugdunin-in-Membranes

    - POPC

    - POPC_CHOL

    - GRAMPOS

3) PMF-calculations

    - GRAMPOS_WT

    - POPC_CHOL_MUT

    - POPC_CHOL_WT

    - POPC_MUT

    - POPC_WT
DOI: 10.5281/zenodo.10839127
title: Simulation Dataset: The antimicrobial fibupeptide lugdunin forms water-filled channel structures in lipid membranes

description: The Zenodo repository contains data to the molecular dynamics simulations in the following manuscript: 

The antimicrobial fibupeptide lugdunin forms water-filled channel structures in lipid membranes 

by

Dominik Ruppelt, Marius F. W. Trollmann, Taulant Dema, Sebastian N. Wirtz, Hendrik Flegel, Sophia Mönnikes, Stephanie Grond, Rainer A. Böckmann*, Claudia Steinem*

0) Lugdunin-parameterization

1) Lugdunin-stack-stability

    - trans_configuration.gro: Artifical lugdunin stack in trans configuration (see SFig. 23 a).

    - gauche_configuration.gro: Artifical lugdunin stack in gauche configuration (see SFig. 23 b)

    - DMPC

    - DOPC

    - POPC

    - POPC_CHOL

2) Partitioning-of-Lugdunin-in-Membranes

    - POPC

    - POPC_CHOL

    - GRAMPOS

3) PMF-calculations

    - GRAMPOS_WT

    - POPC_CHOL_MUT

    - POPC_CHOL_WT

    - POPC_MUT

    - POPC_WT
DOI: 10.18419/darus-2790/580
title: vp_B2_3d3v.h5

description: :unav
DOI: 10.18419/darus-2790/581
title: plot.dat_selalib_sg_1200_0.txt

description: :unav
DOI: 10.18419/darus-2790/582
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/583
title: plot.dat_selalib_sg_3500_0.txt

description: :unav
DOI: 10.18419/darus-2790/584
title: plot.dat_selalib_sg_100_0.txt

description: :unav
DOI: 10.18419/darus-2790/585
title: plot.dat_selalib_sg_3800_0.txt

description: :unav
DOI: 10.18419/darus-2790/586
title: plot.dat_selalib_sg_9300_0.txt

description: :unav
DOI: 10.18419/darus-2790/587
title: plot.dat_selalib_sg_15200_0.txt

description: :unav
DOI: 10.18419/darus-2790/588
title: plot.dat_selalib_sg_11900_0.txt

description: :unav
DOI: 10.18419/darus-2790/589
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/590
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.5281/zenodo.10838003
title: Pohang earthquake continuous data - USN excluded

description: Continuous seismic waveform data (1-hour segments) for 2017 Pohang earthquake region in South Korea with sac format. 11 station's data (except USN) was compressed using 7-ZIP in 2GB increments.
DOI: 10.5281/zenodo.10838004
title: Pohang earthquake continuous data - USN excluded

description: Continuous seismic waveform data (1-hour segments) for 2017 Pohang earthquake region in South Korea with sac format. 11 station's data (except USN) was compressed using 7-ZIP in 2GB increments.
DOI: 10.6084/m9.figshare.25382473
title: Impact of the Iron-Response Regulator Genes on the Release of Iron and Aluminum from Biotite by <i>Rhizobium pusense</i> S41

description: In this study, the biotite weathering activities of strain S41 and mutants with deletion of the iron response regulator genes <i>fur, rirA,</i> and <i>irr</i> were compared. S41Δ<i>rirA</i> had a 35%–60% increase in Fe and Al concentrations, a 95%–112% increase in siderophore production, and a 18%–22% increase in EPS concentration, while S41Δ<i>irr</i> had a 29%–48% decrease in Fe and Al concentrations and a 32%–42% decrease in siderophore production, compared with strain S41. Under iron-sufficient conditions, S41Δ<i>rirA</i> had a 1.5-fold–2.7-fold increase in siderophore production, while there was similar siderophore production between strain S41 and S41Δ<i>irr</i>. Under iron-limited conditions, S41Δ<i>irr</i> had a 34%–40% decrease in siderophore production compared with strain S41. The expression of genes related to the synthesis of siderophores, iron uptake and transporters, and EPS production in strain S41 significantly increased in iron-limited conditions compared with that in iron-sufficient conditions. The expression of genes associated with the synthesis of siderophores and iron uptake and transporters significantly increased in S41Δ<i>rirA</i> in iron-sufficient and iron-limited conditions but decreased in S41Δ<i>irr</i> in iron-limited conditions. Our results suggested that <i>rirA</i>- and <i>irr</i>-modulated multiple genes may be related to the mineral weathering activities of strain S41.
DOI: 10.6084/m9.figshare.25382473.v1
title: Impact of the Iron-Response Regulator Genes on the Release of Iron and Aluminum from Biotite by <i>Rhizobium pusense</i> S41

description: In this study, the biotite weathering activities of strain S41 and mutants with deletion of the iron response regulator genes <i>fur, rirA,</i> and <i>irr</i> were compared. S41Δ<i>rirA</i> had a 35%–60% increase in Fe and Al concentrations, a 95%–112% increase in siderophore production, and a 18%–22% increase in EPS concentration, while S41Δ<i>irr</i> had a 29%–48% decrease in Fe and Al concentrations and a 32%–42% decrease in siderophore production, compared with strain S41. Under iron-sufficient conditions, S41Δ<i>rirA</i> had a 1.5-fold–2.7-fold increase in siderophore production, while there was similar siderophore production between strain S41 and S41Δ<i>irr</i>. Under iron-limited conditions, S41Δ<i>irr</i> had a 34%–40% decrease in siderophore production compared with strain S41. The expression of genes related to the synthesis of siderophores, iron uptake and transporters, and EPS production in strain S41 significantly increased in iron-limited conditions compared with that in iron-sufficient conditions. The expression of genes associated with the synthesis of siderophores and iron uptake and transporters significantly increased in S41Δ<i>rirA</i> in iron-sufficient and iron-limited conditions but decreased in S41Δ<i>irr</i> in iron-limited conditions. Our results suggested that <i>rirA</i>- and <i>irr</i>-modulated multiple genes may be related to the mineral weathering activities of strain S41.
DOI: 10.18419/darus-2790/592
title: plot.dat_selalib_sg_8000_0.txt

description: :unav
DOI: 10.18419/darus-2790/593
title: param.nml

description: :unav
DOI: 10.18419/darus-2790/594
title: reffile_bsl_vpB_3d3v_cart_dd.dat

description: :unav
DOI: 10.18419/darus-2790/595
title: plot.dat_selalib_sg_16000_0.txt

description: :unav
DOI: 10.18419/darus-2790/596
title: vp_B2_3d3v.h5

description: :unav
DOI: 10.18419/darus-2790/597
title: plot.dat_selalib_sg_0_0.txt

description: :unav
DOI: 10.18419/darus-2790/598
title: plot.dat_selalib_sg_800_0.txt

description: :unav
DOI: 10.18419/darus-2790/599
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/600
title: param.nml

description: :unav
DOI: 10.25500/edata.bham.00000487
title: Research data supporting ‘Stratigraphy, palaeoenvironments and geochemistry across the Triassic-Jurassic boundary transition at Carnduff, County Antrim, Northern Ireland’

description: Geochemical and Micropalaeontolgoical data associated with the above Publication
DOI: 10.6084/m9.figshare.25441984
title: Supplementary Material for: Enhanced Skills Training in Affective and Interpersonal Regulation (ESTAIR) vs. Treatment as Usual (TAU) for ICD-11 Complex PTSD: A pilot randomised controlled trial (The RESTORE trial)

description: Introduction
Complex PTSD (CPTSD) is a relatively new condition in ICD-11. This pilot randomised controlled trial aimed to compare a four-module intervention developed to target all symptoms of ICD-11 CPTSD, namely Enhanced Skills in Affective and Interpersonal Regulation (ESTAIR) with treatment as usual (TAU). The purpose of the study was to assess feasibility, safety, acceptability and preliminary outcomes at the end of treatment and 3-month follow-up. 
Methods
A total of N=56 eligible veterans with CPTSD were randomised to either ESTAIR (n=28) or Treatment as Usual (TAU, n=28). Linear mixed models were conducted to assess CPTSD severity, the primary outcome, as measured by the International Trauma Questionnaire (ITQ). 
Results
Treatment dropout in ESTAIR and TAU was low and equivalent (18% vs. 11%; 2 (1) = 1.19, p = .275), and study retention was high, supporting the feasibility of the study. No serious adverse effects and very few adverse effects occurred, none of which were deemed related to the study. ESTAIR provided significantly greater reduction in CPTSD severity across time for ITQ PTSD (p &lt; .001) and DSO (p &lt; .001) symptoms. CPTSD pre-to-post effect sizes for ESTAIR were large (PTSD d = 1.78; DSO d = 2.00). Remission of probable CPTSD diagnosis at post-treatment was substantially greater in ESTAIR compared to TAU with only 13.6% versus 84% (p &lt; .001) retaining the diagnosis. 
Conclusion 
A trial of ESTAIR vs. TAU for the treatment of ICD-11 CPTSD indicates the potential efficacy of ESTAIR as well as its feasibility, safety, and acceptability.
DOI: 10.6084/m9.figshare.25441984.v1
title: Supplementary Material for: Enhanced Skills Training in Affective and Interpersonal Regulation (ESTAIR) vs. Treatment as Usual (TAU) for ICD-11 Complex PTSD: A pilot randomised controlled trial (The RESTORE trial)

description: Introduction
Complex PTSD (CPTSD) is a relatively new condition in ICD-11. This pilot randomised controlled trial aimed to compare a four-module intervention developed to target all symptoms of ICD-11 CPTSD, namely Enhanced Skills in Affective and Interpersonal Regulation (ESTAIR) with treatment as usual (TAU). The purpose of the study was to assess feasibility, safety, acceptability and preliminary outcomes at the end of treatment and 3-month follow-up. 
Methods
A total of N=56 eligible veterans with CPTSD were randomised to either ESTAIR (n=28) or Treatment as Usual (TAU, n=28). Linear mixed models were conducted to assess CPTSD severity, the primary outcome, as measured by the International Trauma Questionnaire (ITQ). 
Results
Treatment dropout in ESTAIR and TAU was low and equivalent (18% vs. 11%; 2 (1) = 1.19, p = .275), and study retention was high, supporting the feasibility of the study. No serious adverse effects and very few adverse effects occurred, none of which were deemed related to the study. ESTAIR provided significantly greater reduction in CPTSD severity across time for ITQ PTSD (p &lt; .001) and DSO (p &lt; .001) symptoms. CPTSD pre-to-post effect sizes for ESTAIR were large (PTSD d = 1.78; DSO d = 2.00). Remission of probable CPTSD diagnosis at post-treatment was substantially greater in ESTAIR compared to TAU with only 13.6% versus 84% (p &lt; .001) retaining the diagnosis. 
Conclusion 
A trial of ESTAIR vs. TAU for the treatment of ICD-11 CPTSD indicates the potential efficacy of ESTAIR as well as its feasibility, safety, and acceptability.
DOI: 10.6084/m9.figshare.25393537
title: Input tasks

description: Inputs
DOI: 10.6084/m9.figshare.25393537.v2
title: Input tasks

description: Inputs
DOI: 10.6084/m9.figshare.23717253
title: Public Preferences of Environmental Peacebuilding: The Case of Forest Conservation Projects in Colombia (supporting data)

description: Supporting data for the research article titled: Public Preferences of Environmental Peacebuilding: The Case of Forest Conservation Projects in Colombia
DOI: 10.6084/m9.figshare.23717253.v1
title: Public Preferences of Environmental Peacebuilding: The Case of Forest Conservation Projects in Colombia (supporting data)

description: Supporting data for the research article titled: Public Preferences of Environmental Peacebuilding: The Case of Forest Conservation Projects in Colombia
DOI: 10.6084/m9.figshare.25393537.v1
title: Inputs

description: Inputs
DOI: 10.18419/darus-2790/601
title: plot.dat_selalib_sg_17800_0.txt

description: :unav
DOI: 10.18419/darus-2790/602
title: vp_B2_3d3v.dat

description: :unav
DOI: 10.18419/darus-2790/603
title: param.nml

description: :unav
DOI: 10.18419/darus-2790/604
title: vp_B2_3d3v.h5

description: :unav
DOI: 10.18419/darus-2790/605
title: plot.dat_selalib_sg_1900_0.txt

description: :unav
DOI: 10.18419/darus-2790/606
title: plot.dat_selalib_sg_13100_0.txt

description: :unav
DOI: 10.18419/darus-2790/607
title: vp_B2_3d3v.h5

description: :unav
DOI: 10.18419/darus-2790/608
title: vp_B2_3d3vadd.dat

description: :unav
DOI: 10.18419/darus-2790/609
title: plot.dat_selalib_sg_15700_0.txt

description: :unav