cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.by7wxc
title: Occurrence Download

description: A dataset containing 381 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Enteropogon ramosus B.K.Simon",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 381 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011733-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2sj2m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((7.9237 1.4388,7.9186 1.8496,6.9096 1.8496,6.7752 1.3312,7.0614 0.9078,7.5027 0.9107,7.9237 1.4388))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011734-250525065834625/datasets/export for details.
DOI: 10.15468/dl.7j2htj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((8.9648 28.8496,-0.0352 28.8496,-0.0352 19.8496,8.9648 19.8496,8.9648 28.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011735-250525065834625/datasets/export for details.
DOI: 10.15468/dl.sj239e
title: Occurrence Download

description: A dataset containing 954 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Epilobium brachycarpum C.Presl",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 954 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011736-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9jyyq
title: Occurrence Download

description: A dataset containing 15858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Epilobium tetragonum L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 15858 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011738-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kb6p3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((8.9648 19.8496,-0.0352 19.8496,-0.0352 10.8496,8.9648 10.8496,8.9648 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011737-250525065834625/datasets/export for details.
DOI: 10.3886/e231621
title: Consumer Product Safety Commission - Violations

description: Notices of Violations issued by the Office of Compliance.
DOI: 10.3886/e231621v1
title: Consumer Product Safety Commission - Violations

description: Notices of Violations issued by the Office of Compliance.
DOI: 10.15468/dl.qjrmxp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((1.2219 37.0382,-0.0352 36.4794,-0.0352 28.8496,8.9648 28.8496,8.9648 37.5879,8.4538 37.4177,7.4601 37.5841,6.845 37.4576,6.4593 37.5936,5.3421 37.2141,4.9133 37.3804,3.8874 37.4256,1.2219 37.0382))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011739-250525065834625/datasets/export for details.
DOI: 10.15468/dl.8s7h6p
title: Occurrence Download

description: A dataset containing 11303495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11303495 records from 4996 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011725-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zutjjc
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Dominican Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024869-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14160240
title: Japanese pangenome datasets and codes
DOI: 10.5281/zenodo.16908477
title: Japanese pangenome datasets and codes
DOI: 10.6084/m9.figshare.28691048
title: Data and files for <b>Polyhydroxybutyrate production by freshwater SAR11 (LD12)</b>

description: The research demonstrates polyhydroxybutyrate production by a freshwater strain of the ubiquitous SAR11 clade bacteria.
DOI: 10.6084/m9.figshare.28691048.v1
title: Data and files for <b>Polyhydroxybutyrate production in freshwater SAR11 (LD12)</b>

description: The research demonstrates polyhydroxybutyrate production by a freshwater strain of the ubiquitous SAR11 clade bacteria.
DOI: 10.15468/dl.2hj6bq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trypetheliopsis coccinea (Aptroot & Sipman) Aptroot"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001660-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.0cfxpnw4m
title: Data from: Decipher soil organic carbon dynamics and driving forces across China using machine learning

description: The dynamics of soil organic carbon (SOC) play a critical role in
 modulating global warming. However, the long-term spatiotemporal changes
 of SOC at large scale and the impacts of driving forces remain unclear. In
 this study, we investigated the dynamics of SOC in different soil layers
 across China through the 1980s to 2010s using a machine learning approach
 and quantified the impacts of the key factors based on factorial
 simulation experiments. Our results showed that the latest (2000-2014) SOC
 stock in the first meter soil (SOC100) was 80.68 ± 3.49 Pg C, of which
 42.6% was stored in the top 20 cm, sequestrating carbon with a rate of
 30.80 ± 12.37 g C m-2 yr-1 since the 1980s. Our experiments focusing on
 the recent two periods (2000s and 2010s) revealed that climate change
 exerted the largest relative contributions to SOC dynamics in both layers
 and warming or drying can result in SOC loss. However, the influence of
 climate change weakened with soil depth, while the opposite for vegetation
 growth. Relationships between SOC and forest canopy height further
 confirmed this strengthened impact of vegetation with soil depth, and
 highlighted the carbon sink function of deep soil in mature forest.
 Moreover, our estimates suggested that SOC dynamics in 71% of topsoil were
 controlled by climate change and its coupled influence with environmental
 variation (CE). Meanwhile CE and the combined influence of climate change
 and vegetation growth dominated the SOC dynamics in 82.05% of the first
 meter soil. Additionally, the national cropland topsoil organic carbon
 increased with a rate of 23.6 ± 7.6 g C m-2 yr-1 since the 1980s, and the
 widely applied nitrogenous fertilizer was a key stimulus. Overall, our
 study extended the knowledge about the dynamics of SOC and deepened our
 understanding about the impacts of the primary factors.
description: Please see the ReadMe
 file.
DOI: 10.5061/dryad.jq2bvq8bf
title: Evaluating coevolution in a horizontally transmitted mutualism

description: Many interspecific interactions are shaped by coevolution. Transmission
 mode is thought to influence opportunities for coevolution within
 symbiotic interactions. Vertical transmission maintains partner fidelity,
 increasing opportunities for coevolution, but horizontal transmission may
 disrupt partner fidelity, potentially reducing opportunities for
 coevolution. Despite these predictions, the role of coevolution in the
 maintenance of horizontally transmitted symbioses is unclear. Leveraging a
 tractable insect-bacteria symbiosis, we tested for signatures of pairwise
 coevolution by assessing patterns of host-symbiont specialization. If
 pairwise coevolution defines the interaction, we expected to observe
 evidence of reciprocal specialization between hosts and their local
 symbionts. We found no evidence for local adaptation between sympatric
 lineages of Anasa tristis squash bugs and Caballeronia spp. symbionts
 across their native geographic range. We also found no evidence for
 specialization between three co-localized Anasa host species and their
 native Caballeronia symbionts. Our results demonstrate generalist dynamics
 underlie the interaction between Anasa insect hosts and their Caballeronia
 symbionts. We predict that selection from multiple host species may favor
 generalist symbiont traits through diffuse coevolution. Alternatively,
 selection for generalist traits may be a consequence of selection by hosts
 for fixed cooperative symbiont traits without coevolution.
DOI: 10.5061/dryad.pk0p2ngq9
title: Genomic evidence of an ancient Inland Temperate Rainforest in the Pacific Northwest of North America

description: The disjunct temperate rainforests of the Pacific Northwest of North
 America (PNW) are characterized by late-successional dominant tree species
 Thuja plicata (western redcedar) and Tsuga heterophylla (western hemlock).
 The demographic histories of these species, along with the PNW rainforest
 ecosystem in its entirety, have been heavily impacted by geological and
 climatic changes the PNW has experienced over the last 5 million years,
 including mountain orogeny and repeated Pleistocene glaciations. These
 environmental events have ultimately shaped the history of these species,
 with inland populations potentially being extirpated during the
 Pleistocene glaciations. Here, we collect genomic data for both species
 across their ranges to test multiple demographic models, each reflecting a
 different hypothesis on how the ecosystem-dominating species may have
 responded to dramatic climatic change. Our results indicate that inland
 and coastal populations in both species diverged approximately 2.5 million
 years ago in the early Pleistocene and experienced decreases in population
 size during glacial cycles, with subsequent population expansion.
 Importantly, we found evidence for gene flow between coastal and inland
 populations during the mid-Holocene. It is likely that intermittent
 migration in these species during this time has prevented allopatric
 speciation via genetic drift alone. In conclusion, our results from
 combining genomic data and demographic inference procedures involving
 machine learning establish that populations of the ecosystem dominants
 Thuja plicata and Tsuga heterophylla persisted in refugia located in both
 the coastal and inland regions of the PNW throughout the Pleistocene, with
 populations expanding and contracting in response to glacial cycles with
 occasional gene-flow.
description: 137 <em>Thuja plicata</em> individuals and 48
 <em>Tsuga heterophylla</em> individuals were sampled from
 throughout their geographic range in the PNW. DNA was extracted from leaf
 tissue and then used in double-digest restriction site associated DNA
 sequencing (ddRADseq). The restriction enzymes used were
 <em>EcoRI</em> and <em>SbfI</em> for
 <em>Thuja</em> <em>plicata</em>
 and <em>SbfI</em> and <em>MspI</em> (New England
 Biolabs, USA) for <em>Tsuga heterophylla</em>. For
 <em>Thuja plicata</em>, sequences were generated as 50 bp
 single end reads using an Illumina HiSeq 2500 at the Berkeley sequencing
 facility. For <em>Tsuga heterophylla</em>, sequences were
 generated as 150 bp paired-end reads using an Illumina HiSeq 4000 at The
 Ohio State University Wexner Medical Center. Raw sequences were processed
 using Ipyrad. All scripts associated with the anaysis of this data,
 including assembly, can be found at https://github.com/ruffleymr/ThujaTsugaAnalyses
DOI: 10.5061/dryad.hqbzkh1j2
title: SUVfdg: a standard-uptake-value (SUV) body habitus normalizer specific to fluorodeoxyglucose (FDG) in humans

description: In PET, several different Standard Uptake Value (SUV) metrics have been
 proposed utilizing different normalizers in an attempt to take into
 consideration the patient to patient differences in radionuclide uptake
 due to differences in body habitus (body weight, surface area, lean body
 mass). These normalizers are to some extent aribitrary in that they are
 selected from the list of proposed body habitus metrics, none of which
 necessarily describes well the distribution volume into which a given
 radionuclide labeled compound distributes with the body.  In this
 work we propose a new body habitus normalizer, SUVfdg, that is specific to
 the tracer 18F-FDG and which like previously proposed SUV normalizers is a
 simple function of a patient's height and weight. Derivation of this
 metric assumed that absolute normal-liver FDG uptake rate is not itself a
 function of body habitus (i.e. is not correlated with height, weight,
 etc). The SUVfdg metric was tested in an independent cohort and shown to
 have little to no correlation with body habitus measures in normal liver,
 spleen and blood. When applied to normal brain uptake, it was shown to
 vary as a function of patient age.
description: After exclusions for type and extent
 of cancer and timing of the scan, a cohort of 481 patients was selected
 for analysis of <sup>18</sup>F-FDG uptake into “normal”
 tissues (presumed to be unaffected by their disease). Among these, 65
 patients had only brain concentrations measured and the remaining 416 were
 randomly divided into an 86-patient test set and a 330-patient training
 set. Within the test set, normal liver, spleen and blood measures were
 made. In the training set, only normal liver concentrations were measured.
 Using data from the training set, a simple polynomial function of height
 and weight was selected (following a subjective procedure) to predict each
 patient’s mean liver percent injected dose per milliliter. This function,
 when used to normalize measured %ID/ml concentrations, defines a new SUV
 metric (SUV<sub>fdg</sub>) which we compared to SUV metrics
 normalized by body weight (SUV<sub>bw</sub>), lean-body mass
 (SUV<sub>lbm</sub>) and body surface-area
 (SUV<sub>bsa</sub>) in a five-fold cross-validation.
 SUV<sub>fdg</sub> was also tested on the independent holdout
 sets utilizing the measurements of normal liver, blood, spleen and
 brain.
DOI: 10.5061/dryad.f1vhhmgzv
title: A mechanism for punctuating equilibria during mammalian vocal development

description: Evolution and development are typically characterized as the outcomes of
 gradual changes, but sometimes such changes are abrupt: States of
 equilibrium can be punctuated by sudden change. Here, we studied the early
 vocal development of three different mammals: common marmoset monkeys,
 Egyptian fruit bats, and humans. Consistent with the notion of punctuated
 equilibria, we found that all three species undergo at least one sudden
 transition in the acoustics of their developing vocalizations. This was
 expected. To understand the mechanism, we modeled different developmental
 landscapes. We found that the transition was best described as a shift in
 the balance of two vocalization landscapes. We show that the natural
 dynamics of these two landscapes are consistent with the dynamics of
 energy expenditure and information transmission. By using them as
 constraints for each species, we predicted the differences in transition
 timing from immature to mature vocalizations. Using marmoset monkeys, we
 were able to manipulate both infant energy expenditure (vocalizing in a
 heliox environment) and information transmission (closed-loop contingent
 parental vocal playback). These experiments supported our predictions
 regarding the role of energy and information in leading to punctuating
 equilibrium states of vocal development.
DOI: 10.5061/dryad.v41ns1rzf
title: Environmental and anthropogenic features in relation to human hunting and wolf predation risk

description: Landscape characteristics, seasonal changes in the environment, and
 daylight conditions influence space use and detection of prey and
 predators, resulting in spatiotemporal patterns of predation risk for the
 prey. When predators have different hunting modes, the combined effects of
 multiple predators are mediated by the physical landscape and can result
 in overlapping or contrasting patterns of predation risk. Humans have
 become super predators in many anthropogenic landscapes by harvesting
 games species and competing with large carnivores for prey. Previous
 studies have focused on how the physical environment mediates risk from
 human hunters and ambush predators, but very little knowledge exists on
 how risk from hunters and cursorial predators is linked to habitat
 characteristics. Here, we used the locations of wolf (Canis lupus)-killed
 and hunter-killed moose (Alces alces) in south-central Scandinavia to
 investigate whether environmental and anthropogenic features within the
 landscape influenced where wolves and hunters killed moose. We predicted
 that due to differences in hunting modes between wolves and hunters, the
 combined effects of these two predators would result in contrasting
 patterns of spatial risk. Nonetheless, we expected these contrasting
 spatial patterns of risk to also contrast temporally, with wolves and
 hunters killing predominantly at night and during the day, respectively.
 During the moose hunting season, the probability of a wolf kill increased
 with wolf space use, whereas it decreased with increasing distance to
 forest roads, building density and distance to young forests and
 clear-cuts. After the moose hunting season, the probability of a wolf kill
 increased with increasing moose density, wolf space use and terrain
 ruggendess, while it decreased with increasing building density, distance
 to main and secondary roads and distance to young forests and clear-cuts.
 The probability of a hunter kill was highest closer to bogs, main and
 secondary roads, in areas with greater moose density, less rugged terrain
 and higher building density. Hunters killed all moose during the day,
 whereas wolves killed most moose at nighttime both during and after the
 hunting season. Our findings suggest that both environmental and
 anthropogenic features mediate hunting and wolf predation risk.
 Additionally, we found that hunter- and wolf-killed moose exhibited
 contrasting spatial associations to landscape features, most likely as a
 result of the different hunting modes and needs exhibited by hunters and
 wolves. However, wolf predation risk and hunting risk also contrasted in
 time, since wolves killed mostly at night and hunters were restricted to
 hunting during daytime and during the hunting season. This temporal
 segregation in risk might therefore suggest that moose could minimize risk
 exposure by taking advantage of spatiotemporally vacant hunting domains.
DOI: 10.5061/dryad.rr4xgxdb2
title: Raw sequence of: Field investigation- and dietary metabarcoding-based screening of arthropods that prey on primary tea pests

description: Predatory natural enemies play key functional roles in biological control.
 Abundant predatory arthropod species have been recorded in tea plantation
 ecosystems. However, few studies have comprehensively evaluated the
 control effect of predatory arthropods on tea pests in the field. We
 performed a one-year field investigation and collected predatory
 arthropods and pests in the tea canopy. Total 7,931 predatory arthropod
 individuals were collected, and Coleosoma blandum (Araneae, Theridiidae)
 was the most abundant species in the studied tea plantation. The
 population dynamics between C. blandum and four main tea pest species
 (Aleurocanthus spiniferus, Empoasca onukii, Ectropis grisescens and
 Scopula subpunctaria) were established using the individual number of
 predators and pests in each month. The results showed that the occurrence
 of C. blandum showed high synchronism with the occurrence of A.
 spiniferus, Em. onukii and Ec. grisescens. The prey spectrum of C. blandum
 was further analyzed using DNA metabarcoding. Among prey species, A.
 spiniferus, Em. onukii and Ec. grisescens were included, and the relative
 abundance and positive rates of target DNA fragments of A. spiniferus were
 obviously greater than those of other two pests.