cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30911211
title: The complete mitochondrial genome of <i>Traccatichthys punctulatus</i> (Cypriniformes: Nemacheilidae) and its phylogenetic status

description: <i>Traccatichthys punctulatus</i> is a small, colorful and benthic Nemacheilidae species distributed in southern China. Currently, limited published genetic information of Nemacheilidae has hindered the taxonomic research and phylogenetic analysis of this family. In this study, the complete mitochondrial genome (mitogenome) of <i>T. punctulatus</i> was determined using next-generation sequencing. The mitogenome is 16,576 base pairs (bp) in length, comprising 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 2 non-coding regions: the control region (D-loop) and the origin of light-strand replication (O<sub>L</sub>). The overall nucleotide base composition is 30.82% A, 25.52% T, 16.36% G, and 27.30% C, with a slightly high A + T content (56.34%). The nucleotide skewness for the full sequence (AT-skew = 0.094, GC-skew = −0.251) is biased toward A and C. Phylogenetic analysis <i>via</i> Bayesian inference (BI) and maximum likelihood (ML) based on concatenated 13 PCGs showed that <i>T. punctulatus</i> clusters with all congeners and occupies a basal position within <i>Traccatichthys</i>, supporting monophyly of <i>Traccatichthys</i> and underscoring distinct evolutionary history of <i>T. punctulatus</i>. This mitogenome may provide rather informative data for species identification and conservation genetics.
DOI: 10.6084/m9.figshare.30911211.v1
title: The complete mitochondrial genome of <i>Traccatichthys punctulatus</i> (Cypriniformes: Nemacheilidae) and its phylogenetic status

description: <i>Traccatichthys punctulatus</i> is a small, colorful and benthic Nemacheilidae species distributed in southern China. Currently, limited published genetic information of Nemacheilidae has hindered the taxonomic research and phylogenetic analysis of this family. In this study, the complete mitochondrial genome (mitogenome) of <i>T. punctulatus</i> was determined using next-generation sequencing. The mitogenome is 16,576 base pairs (bp) in length, comprising 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 2 non-coding regions: the control region (D-loop) and the origin of light-strand replication (O<sub>L</sub>). The overall nucleotide base composition is 30.82% A, 25.52% T, 16.36% G, and 27.30% C, with a slightly high A + T content (56.34%). The nucleotide skewness for the full sequence (AT-skew = 0.094, GC-skew = −0.251) is biased toward A and C. Phylogenetic analysis <i>via</i> Bayesian inference (BI) and maximum likelihood (ML) based on concatenated 13 PCGs showed that <i>T. punctulatus</i> clusters with all congeners and occupies a basal position within <i>Traccatichthys</i>, supporting monophyly of <i>Traccatichthys</i> and underscoring distinct evolutionary history of <i>T. punctulatus</i>. This mitogenome may provide rather informative data for species identification and conservation genetics.
DOI: 10.6084/m9.figshare.30913273
title: Chloroplast genome analysis of <i>Portulaca gilliesii</i> Hook. 1831 and its phylogenetic placement within <i>Portulaca</i>ceae

description: <i>Portulaca</i>, commonly referred to as purslane or moss rose, is a genus of flowering plants noted for their high nutritional content and traditional medicinal applications. In this study, we utilized high-throughput sequencing to sequence, assemble, and annotate the chloroplast (cp) genomes of <i>P. gilliesii</i>. The complete cp genome was found to be 157,429 bp in size with a GC content of 36%. We identified a total of 129 genes, comprising 84 protein-coding genes (PCGs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis based on the PCGs revealed a close relationship between <i>P. gilliesii</i> and <i>P. grandiflora</i>. These results provide valuable insights for the improved identification, development, and utilization of <i>Portulaca</i> germplasm.
DOI: 10.6084/m9.figshare.30913273.v1
title: Chloroplast genome analysis of <i>Portulaca gilliesii</i> Hook. 1831 and its phylogenetic placement within <i>Portulaca</i>ceae

description: <i>Portulaca</i>, commonly referred to as purslane or moss rose, is a genus of flowering plants noted for their high nutritional content and traditional medicinal applications. In this study, we utilized high-throughput sequencing to sequence, assemble, and annotate the chloroplast (cp) genomes of <i>P. gilliesii</i>. The complete cp genome was found to be 157,429 bp in size with a GC content of 36%. We identified a total of 129 genes, comprising 84 protein-coding genes (PCGs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis based on the PCGs revealed a close relationship between <i>P. gilliesii</i> and <i>P. grandiflora</i>. These results provide valuable insights for the improved identification, development, and utilization of <i>Portulaca</i> germplasm.
DOI: 10.6084/m9.figshare.30933189
title: The complete chloroplast genome and phylogenetic analysis of <i>Gymnosphaera andersonii</i> (Cyatheaceae)

description: This study assembles the first complete chloroplast genome of <i>Gymnosphaera andersonii</i>. The circular genome spans 155,232 bp with a GC content of 40.64%, comprising a large single-copy (85,843 bp), a small single-copy (21,607 bp), and two inverted repeats (23,891 bp). It harbors 125 genes, including 85 protein-coding genes, 32 tRNA genes, and eight rRNA genes. Phylogenetic analysis within the Cyatheaceae family reveals that <i>G. andersonii</i> forms a sister clade to <i>G. khasiana</i>. These findings provide critical genomic insights into the evolutionary relationships of Cyatheaceae and establish a foundation for future conservation and biogeographic studies of <i>G. andersonii</i>.
DOI: 10.6084/m9.figshare.30933189.v1
title: The complete chloroplast genome and phylogenetic analysis of <i>Gymnosphaera andersonii</i> (Cyatheaceae)

description: This study assembles the first complete chloroplast genome of <i>Gymnosphaera andersonii</i>. The circular genome spans 155,232 bp with a GC content of 40.64%, comprising a large single-copy (85,843 bp), a small single-copy (21,607 bp), and two inverted repeats (23,891 bp). It harbors 125 genes, including 85 protein-coding genes, 32 tRNA genes, and eight rRNA genes. Phylogenetic analysis within the Cyatheaceae family reveals that <i>G. andersonii</i> forms a sister clade to <i>G. khasiana</i>. These findings provide critical genomic insights into the evolutionary relationships of Cyatheaceae and establish a foundation for future conservation and biogeographic studies of <i>G. andersonii</i>.
DOI: 10.15468/dl.2fgng4
title: Occurrence Download

description: A dataset containing 4431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parthenium hysterophorus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 4431 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010453-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14609665
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.18365123
title: BIZNES TUSHUNCHASI VA UNING MOHIYATI

description: Ushbu maqolada biznes tushunchasining mazmuni va uning zamonaviy iqtisodiy hayotdagi ahamiyati yoritiladi. Maqolada biznesning paydo bo`lish sabablari, uning jamiyat taraqqiyotiga ko`rsatilgan ta`siri, shuningdek, tadbirkorlik faoliyatining asosiy tamoyillari haqida fikr yuritiladi. Biznesni boshqarishda innovatsion yondashuv, resurslardan samarali foydalanish va raqobat muhiti kabi omillarning roli alohida qilib ko`chib chiqiladi. Tadqiqot natijalari biznes faoliyatining iqtisodiy barqarorlikni ta`minlashga muhim o`rnini ochib beradi. Ushbu maqola biznes sohasiga qiziquvchi talaba va o`quvchilar uchun amaliy ahamiyatga ega.
DOI: 10.5281/zenodo.18365124
title: BIZNES TUSHUNCHASI VA UNING MOHIYATI

description: Ushbu maqolada biznes tushunchasining mazmuni va uning zamonaviy iqtisodiy hayotdagi ahamiyati yoritiladi. Maqolada biznesning paydo bo`lish sabablari, uning jamiyat taraqqiyotiga ko`rsatilgan ta`siri, shuningdek, tadbirkorlik faoliyatining asosiy tamoyillari haqida fikr yuritiladi. Biznesni boshqarishda innovatsion yondashuv, resurslardan samarali foydalanish va raqobat muhiti kabi omillarning roli alohida qilib ko`chib chiqiladi. Tadqiqot natijalari biznes faoliyatining iqtisodiy barqarorlikni ta`minlashga muhim o`rnini ochib beradi. Ushbu maqola biznes sohasiga qiziquvchi talaba va o`quvchilar uchun amaliy ahamiyatga ega.
DOI: 10.15468/dl.3vufyb
title: Occurrence Download

description: A dataset containing 6977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ciconiidae",
 "Year 1980-2026"
 ]
}

 The dataset includes 6977 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010454-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18365081
title: Biomechanical related bioinformatics analysis in the pathogenesis of glioblastoma (GBM) progression

description: Human scRNAseq and mouse bulk RNAseq analysis of Biomechanical mechanism in GBM.
DOI: 10.5281/zenodo.18365080
title: Biomechanical related bioinformatics analysis in the pathogenesis of glioblastoma (GBM) progression

description: Human scRNAseq and mouse bulk RNAseq analysis of Biomechanical mechanism in GBM.
DOI: 10.5281/zenodo.18365133
title: KELAJAKDAGI FIZIKA O'QITUVCHILARINI AXBOROT TAYYORLASHNING MAZMUNI VA METODOLOGIYASI

description: Ushbu maqolada kelajakdagi fizika o‘qituvchilarini axborot tayyorlash jarayonining mazmuni va metodologik asoslari yoritiladi. Raqamli ta’lim muhitining rivojlanishi sharoitida fizika o‘qituvchisining axborot bilan ishlash kompetensiyalari, zamonaviy pedagogik texnologiyalarni qo‘llash, raqamli resurslar yaratish va ulardan samarali foydalanish masalalari tahlil qilinadi. Maqolada axborot tayyorlashning tarkibiy qismlari, metodologik yondashuvlar, ta’lim jarayonida innovatsion usullardan foydalanish yo‘llari hamda kelajakdagi fizika o‘qituvchilarining kasbiy tayyorgarligini oshirishga qaratilgan takliflar bayon etiladi.
DOI: 10.5281/zenodo.18365134
title: KELAJAKDAGI FIZIKA O'QITUVCHILARINI AXBOROT TAYYORLASHNING MAZMUNI VA METODOLOGIYASI

description: Ushbu maqolada kelajakdagi fizika o‘qituvchilarini axborot tayyorlash jarayonining mazmuni va metodologik asoslari yoritiladi. Raqamli ta’lim muhitining rivojlanishi sharoitida fizika o‘qituvchisining axborot bilan ishlash kompetensiyalari, zamonaviy pedagogik texnologiyalarni qo‘llash, raqamli resurslar yaratish va ulardan samarali foydalanish masalalari tahlil qilinadi. Maqolada axborot tayyorlashning tarkibiy qismlari, metodologik yondashuvlar, ta’lim jarayonida innovatsion usullardan foydalanish yo‘llari hamda kelajakdagi fizika o‘qituvchilarining kasbiy tayyorgarligini oshirishga qaratilgan takliflar bayon etiladi.
DOI: 10.15468/dl.wccb4p
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Peganum harmala",
 "Year 1970-2000"
 ]
}

 The dataset includes 103 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010455-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31132582
title: tsRNA Profiling of Cardiomyocytes Exosomes

description: To identify exosomal molecules from cTnI<sup>R193H</sup>-mutant cardiomyocytes that activate fibroblasts, small RNA microarray analysis was performed on isolated exosomes, profiling miRNA, pre-miRNA, tRNA, tsRNA, and snoRNAs.
DOI: 10.6084/m9.figshare.31132582.v1
title: tsRNA Profiling of Cardiomyocytes Exosomes

description: To identify exosomal molecules from cTnI<sup>R193H</sup>-mutant cardiomyocytes that activate fibroblasts, small RNA microarray analysis was performed on isolated exosomes, profiling miRNA, pre-miRNA, tRNA, tsRNA, and snoRNAs.
DOI: 10.5281/zenodo.18365144
title: INSTRUMENTAL TIZIMLARDAN FOYDALANGAN HOLDA MASOFAVIY O'QUV KURSLARINI ISHLAB CHIQISHDA O'QITISHNING MAZMUNI VA USLUBIY YONDASHUVLARI

description: Ushbu maqolada masofaviy o‘quv kurslarini ishlab chiqish va ularni o‘qitishda instrumental tizimlardan foydalanishning mazmuni va metodik yondashuvlari ilmiy-pedagogik jihatdan tahlil qilinadi. Mazkur ishda masofaviy kurslarning interaktiv, adaptiv va multimedia asosida tashkil etilishi, gamifikatsiya va motivatsiya elementlaridan foydalanish, ijtimoiy o‘quv komponentlari, pedagogik diagnostika, tanqidiy fikrlash va loyiha asosida o‘qitish metodikasi kabi yo‘nalishlar yoritilgan. Shuningdek, o‘quvchilarning mustaqil ishlash ko‘nikmalarini rivojlantirish, bilim va kompetensiyalarni tizimli shakllantirish, o‘qituvchining pedagogik qo‘llab-quvvatlashi va masofaviy ta’lim jarayonida samaradorlikni oshirish masalalari ochib berilgan.
DOI: 10.5281/zenodo.18365143
title: INSTRUMENTAL TIZIMLARDAN FOYDALANGAN HOLDA MASOFAVIY O'QUV KURSLARINI ISHLAB CHIQISHDA O'QITISHNING MAZMUNI VA USLUBIY YONDASHUVLARI

description: Ushbu maqolada masofaviy o‘quv kurslarini ishlab chiqish va ularni o‘qitishda instrumental tizimlardan foydalanishning mazmuni va metodik yondashuvlari ilmiy-pedagogik jihatdan tahlil qilinadi. Mazkur ishda masofaviy kurslarning interaktiv, adaptiv va multimedia asosida tashkil etilishi, gamifikatsiya va motivatsiya elementlaridan foydalanish, ijtimoiy o‘quv komponentlari, pedagogik diagnostika, tanqidiy fikrlash va loyiha asosida o‘qitish metodikasi kabi yo‘nalishlar yoritilgan. Shuningdek, o‘quvchilarning mustaqil ishlash ko‘nikmalarini rivojlantirish, bilim va kompetensiyalarni tizimli shakllantirish, o‘qituvchining pedagogik qo‘llab-quvvatlashi va masofaviy ta’lim jarayonida samaradorlikni oshirish masalalari ochib berilgan.
DOI: 10.15468/dl.8e24gj
title: Occurrence Download

description: A dataset containing 1027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Carum carvi"
 ]
}

 The dataset includes 1027 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010456-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7937/k9/tcia.2016.tlpmr1am
title: Fused Radiology-Pathology Prostate Dataset
title: Prostate Fused-MRI-Pathology

description: This collection comprises a total of 35 3 Tesla T1-weighted, T2-weighted, Diffusion weighted and Dynamic Contrast Enhanced prostate MRI along with accompanying digitized histopathology (H&Estained) images of corresponding radical prostatectomy specimens. The MRI scans also have a mapping of extent of prostate cancer on them. Each surgically excised prostate specimen was originally sectioned and quartered resulting in 4 slides for each section. Each of these individual slides was digitized at 20x magnification using an Aperio slide scanner resulting in a set of 4 .svs images. Each of the 4 .svs images were then digitally stitched together to constitute a pseudo-whole mount section (.tiff). Annotations of cancer presence on the pseudo-whole mount sections were made by an expert pathologist. Slice correspondences were established between the individual T2w MRI and stitched pseudo-whole mount sections and checked for accuracy by an expert pathologist and radiologist. Deformable co-registration was employed to spatially co-registered the corresponding radiologic and histopathologic tissue sections to map disease extent onto the corresponding MRI scans.
DOI: 10.7937/k9tcia.2017.murs5cl
title: SPIE-AAPM PROSTATEx Challenge Data

description: SPIE, along with the support of the American Association of Physicists in Medicine (AAPM) and the National Cancer Institute (NCI), will conduct a “Grand Challenge” on quantitative image analysis methods for the diagnostic classification of clinically significant prostate lesions. As part of the 2017 SPIE Medical Imaging Symposium, the PROSTATEx Challenge will provide a unique opportunity for participants to compare their algorithms with those of others from academia, industry, and government in a structured, direct way using the same data sets. For more details, go to http://www.spie.org/PROSTATEx/
DOI: 10.7937/k9tcia.2017.sgw7caqw
title: TCIA Mouse-Astrocytoma Collection

description: This collection consists of magnetic resonance images (MRI) of genetically engineered mouse models (GEMMs) of high grade astrocytoma, including glioblastoma multiforme (GBM). In these GEMMs, the most commonly disregulated networks in GBM -- RB, KRAS and/or PI3K signaling -- are perturbed at the genetic level. These genetic aberrations induce development of high grade astrocytoma in the mouse with properties similar to that of human disease. MRI was used to perform a qualitative and quantitative phenotypic characterization of the different genotypes and molecular subtypes. Additionally, mouse MRI images were compared human GBM imaging parameters using the VASARI lexicon. The MRI data contained herein includes anatomic T2 weighted images and dynamic contrast enhanced MRI. For more information, please contact Dr. Sunny Jansen (jansensa0@gmail.com) or Dr. Nailing Zhang (nailing9970@gmail.com).
DOI: 10.7937/tcia.2019.30ilqfcl
title: Data from the ACRIN 6668 Trial NSCLC-FDG-PET
title: ACRIN-NSCLC-FDG-PET

description: Positron Emission Tomography Pre- and Post-treatment Assessment for Locally Advanced Non-small Cell Lung Carcinoma This was a multicenter clinical trial by the ACRIN Cooperative Group (now part of ECOG-ACRIN) and the RTOG Cooperative Group (now part of NRG) using FDG-PET imaging both pre- and post-chemoradiotherapy.The objective of the ACRIN 6668 multi-center clinical trial was to determine if the PET standardized uptake value (SUV) measurement from FDG-PET imaging shortly after treatment is a useful predictor of long-term clinical outcome (survival) after definitive chemoradiotherapy. Eligible patients were those older than 18 years with AJCC-criteria clinical stage IIB/III non-small cell lung carcinoma who were being planned for definitive concurrent chemoradiotherapy (inoperable disease).Primary Aim Findings: Higher post-treatment tumor SUV (SUVpeak, SUVmax) is associated with worse survival in stage III NSCLC, although a clear SUV cutoff value for routine clinical use as a prognostic factor was uncertain [1]. Later analyses found that larger pre-treatment metabolic tumor volumes (MTVs) were associated with significantly worse overall survival [2]. Other secondary analyses found potentially predictive image texture biomarkers.Study Design Summary: Patients received conventional concurrent platinum-based chemoradiotherapy without surgery; post-radiotherapy consolidation chemotherapy was allowed. A baseline whole-body FDG-PET scan was performed prior to therapy. A second post-treatment whole-body FDG-PET scan occurred approximately 14 weeks after radiotherapy (at least 4 weeks after adjuvant chemotherapy). Pre-treatment FDG-PET scans were performed on ACRIN-qualified scanners. Post-treatment FDG-PET scans were required to be performed within 12–16 weeks after completion of therapy, using the same scanner as that used for the pre-treatment scans.
DOI: 10.7937/tcia.2019.pnn6aypl
title: MiMM_SBILab Dataset: Microscopic Images of Multiple Myeloma

description: Microscopic images were captured from bone marrow aspirate slides of patients diagnosed with multiple myeloma as per the standard guidelines. Slides were stained using Jenner-Giemsa stain. Images were captured at 1000x magnication using Nikon Eclipse-200 microscope equipped with a digital camera. Images were captured in raw BMP format with a size of 2560x1920 pixels. In all, this dataset consists of 85 images. All these 85 images were stain normalized using our in-house methodology before being used for segmentation. These stain normalized images have been provided as the annotated dataset with plasma cells marked in all image slides contained in a PowerPoint presentation for the ready reference of readers.
DOI: 10.7937/tcia.2020.a61ioc1a
title: Prostate MRI and Ultrasound With Pathology and Coordinates of Tracked Biopsy (Prostate-MRI-US-Biopsy)

description: This dataset was derived from tracked biopsy sessions using the Artemis biopsy system, many of which included image fusion with MRI targets. Patients received a 3D transrectal ultrasound scan, after which nonrigid registration (e.g. “fusion”) was performed between real-time ultrasound and preoperative MRI, enabling biopsy cores to be sampled from MR regions of interest. Most cases also included sampling of systematic biopsy cores using a 12-core digital template. The Artemis system tracked targeted and systematic core locations using encoder kinematics of a mechanical arm, and recorded locations relative to the Ultrasound scan. MRI biopsy coordinates were also recorded for most cases. MRI targets were defined using multiparametric MRI, e.g. t2-weighted, diffusion-weighted, and perfusion-weighted sequences, and scored on a Likert-like scale with close correspondence to PIRADS version 2. t2-weighted MRI was used to trace ROI contours, and is the only sequence provided in this dataset. MR imaging was performed on a 3 Tesla Trio, Verio or Skyra scanner (Siemens, Erlangen, Germany). A transabdominal phased array was used in all cases, and an endorectal coil was used in a subset of cases. The majority of pulse sequences are 3D T2:SPC, with TR/TE 2200/203, Matrix/FOV 256 × 205/14 × 14 cm, and 1.5mm slice spacing. Some cases were instead 3D T2:TSE with TR/TE 3800–5040/101, and a small minority were imported from other institutions (various T2 protocols.) Ultrasound scans were performed with Hitachi Hi-Vision 5500 7.5 MHz or the Noblus C41V 2-10 MHz end-fire probe. 3D scans were acquired by rotation of the end-fire probe 200 degrees about its axis, and interpolating to resample the volume with isotropic resolution. Patients with suspicion of prostate cancer due to elevated PSA and/or suspicious imaging findings were consecutively accrued. Any consented patient who underwent or had planned to receive a routine, standard-of-care prostate biopsy at the UCLA Clark Urology Center was included.
DOI: 10.7937/k9/tcia.2014.x7ony6b1
title: NSCLC Radiogenomics: Initial Stanford Study of 26 Cases

description: This collection contains images from patients with non-small cell lung cancer (NSCLC) imaged prior to surgical excision with both thin-section computed tomography (CT) and whole body positron emissions tomography (PET)/CT scans acquired under Institutional Review Board approval from StanfordUniversityand the Veterans Administration Palo Alto Health Care System. The first installment of 26 cases (see shared list "NSCLC Radiogenomics: Initial Stanford Study of 26 Cases") corresponds to microarray data acquired from the excised samples, which is available on the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus, where Digital Imaging and Communications in Medicine (DICOM) patient names are identical to microarray sample names