cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/nrg66cckjm
title: Hwang et al. Chinese reference production data

description: This data set includes reference production data for Mandarin and Cantonese for Hwang et al. (2020)
DOI: 10.6084/m9.figshare.25997215.v1
title: Supplementary Material for: Integrative analysis by mendelian randomization and large-scale single-cell transcriptomics reveals causal links between B cell subtypes and diabetic kidney disease

description: Introduction: The growing incidence of diabetic kidney disease (DKD) and the difficulties in its management underscore the need for a more comprehensive understanding of its pathogenesis. Recent studies have emphasized the significant impact of circulating immunity on the development of diabetic microvascular complications including retinopathy and neuropathy, research on circulating immunity in DKD remains limited. Methods: This study utilized mendelian randomization (MR) analysis to explore the potential independent causal relationships between circulating immune cells and DKD pathogenesis. Additionally, a combination of single-cell disease relevance score (scDRS) and immune cell infiltration analysis was employed to map the circulating immunity landscape in DKD patients. Results: Ten immune traits, including 5 of B cells, 2 of T cells, 2 of granulocytes and one of monocytes, were defined to be associated with the pathogenesis of DKD. Notably, IgD-CD27- B cell Absolute Count [IVW: OR, 1.102 (1.023 to 1.189), p=0.011] and IgD-CD24- B cell Absolute Count [IVW: OR, 1.106 (1.030 to 1.188), p=0.005] were associated with promoting DKD pathogenesis, while CD24+CD27+ B cell %B cell [IVW: OR, 0.943 (0.898 to 0.989), p=0.016] demonstrated a protective effect against DKD onset. The presence of B cell activating factor receptor (BAFF-R) on CD20-CD38- B cell [IVW: OR, 0.946 (0.904 to 0.989), p=0.015] and BAFF-R on IgD-CD38+ B cell [IVW: OR, 0.902 (0.834 to 0.975), p=0.009] also indicated a potential role in preventing DKD. Single-cell disease relevance score (scDRS) analysis revealed that two main subsets of B cells, naïve B and memory B cells, had a higher proportion of DKD-related cells or a higher scDRS score of DKD phenotype, indicating their strong association with DKD. Furthermore, immune infiltrate deconvolution analysis showed a notable decrease in the circulating memory B cells and class-switched memory B cells in DKD patients compared to those of DM patients without DKD. Conclusion: Our study revealed the causal relations between circulating immunity and DKD susceptibility, particularly highlighted the potential roles of B cell subtypes in DKD development. Further studies addressing the related mechanisms would broaden the current understanding of DKD pathogenesis.
DOI: 10.6084/m9.figshare.28601381.v1
title: Figure S5

description: Raw dataset
DOI: 10.17632/dv5prcwz42
title: Data for manuscript "Mitigation of Soil Organic Carbon Photo-facilitation through Exogenous Iron"

description: Data for manuscript "Mitigation of Soil Organic Carbon Photo-facilitation through Exogenous Iron"
DOI: 10.17608/k6.auckland.23632095.v1
title: HVN BREAD Metadata Record - Bread Related Effect on Microbial Distribution (BREAD) Study

description: This metadata record and it's attached files make statements about the kinds of data collected as part of this research, and set out policies for governance of that data, now and in the future.Description: Dietary fibre (DF) is important in our diet. It promotes laxation, and reduces the risk of developing chronic diseases, including coronary heart disease, stroke, type 2 diabetes and colorectal cancer. However, inadequate DF intake is a dire issue in New Zealand (NZ). One of the strategies to improve DF intake in NZ could be to add DF into our everyday foods. Bread is the main food source of DF, and is considered as one of the cheaper food products to procure in NZ. Further, bread is an ideal vehicle to incorporate cereal bran into bread to increase DF content, which ultimately, may improve DF intake in the NZ population. Among all types of cereal bran, rice bran has high DF content, of which is doubled than that of oat bran. No trials, to date, have used defatted rice bran (DRB) in bread as an intervention. The process of defatting increases the proportion of DF in rice bran by increasing its insoluble fibre content. Several studies have therefore, suggested using DRB as a source of value-added food ingredient. As the recommended intake for DF differs between females and males, this study will therefore, assess the effects of three (females), four (males) slices of DRB bread over 28 days on gut microbial composition and function, other specific clinical, biological and physiome outcomes in healthy adults with low DF intake.
DOI: 10.6084/m9.figshare.13288808.v1
title: Raw data file_African Snail Project.csv

description: Giant African snail (<i>Achatina fulica</i>) population groups in urban areas of Cartagena, Colombia<br>This archive contains the following data:<br><br>- Name and coordinates of the sites where the snails were found<br>- Effective area sampled by each site represented in m2 to establish population density at each site<br>- Number of snails collected per site<br>- Size and weight measured for each snail to establish significant differences by site and determine the population structure and biomass of the snails<br> - Results of parasitological analyzes<br>- Some observations
DOI: 10.17632/fprgh2nh5f
title: Measurements of the first Brazilian multi-parameter water quality monitoring system in real time (USP / IEE / UFSCar)

description: These data are the first prototype in Brazil of a system for monitoring the quality of water supply in real time, consisting of 6 low-cost electronic sensors plotted in embedded systems. This prototype was created through the partnership USP / UFSCar / IEE and is located at the Laboratory of Optics and Photonics (OLAF - UFSCar). This file contains measurements taken on 4/17/2021 and 4/24/2021 for approximately 4 hours each day, and presents the variation of the parameters according to the variation of the system flow.
DOI: 10.6084/m9.figshare.1463377.v2
title: S1 File

description: S1 File. Compressed zip file of acquired cDTI DICOM data: Acquired DICOM data of the 6 diffusion directions for bmain and bref per subject
DOI: 10.4121/12716081.v2
title: GOTOV Human Physical Activity and Energy Expenditure Dataset on Older Individuals

description: Wearable sensor-based data of physical activities and indirect calorimetry for 35 (14 female, 21 male) healthy older individuals (over 60 years old). The data has been collected from different body locations and devices: 3x GeneActives accelerometers (ankle, wrist, and chest), 1x Equivital (chest) and COSMED (mask and belt on chest). The 35 individuals followed a protocol of 16 activities of daily living for approximately an hour and a half in a semi-lab environment. These include different types or paces of indoor and outdoor activities with low (lying down, sitting), mid (standing, household activities) and high (walking and cycling) levels of intensity. Additionally, some activities can be specified at different granularities. The study took place at LUMC, between February and May 2015.
DOI: 10.6084/m9.figshare.19200272.v1
title: A pathological ulna of <i>Amurosaurus riabinini</i> from the Upper Cretaceous of Far Eastern Russia

description: Bone fractures are the most common type of injuries preserved in the dinosaur fossil record. Poor healing of deep lesions could lead to infection and misalignment of the fracture parts, causing the animals to limp and jeopardising their survival. A wide variety of fossilised fractures have been identified in dinosaur remains, and the type of bone response can provide information about their resilience and ability to survive even major traumatic events. Here we describe a pathological ulna of the lambeosaurine dinosaur <i>Amurosaurus riabinini</i>, from the Udurchukan Formation (Maastrichtian, Upper Cretaceous) of Blagoveshchensk (Amur Region, Russia). Its distal region is hypertrophied and swollen, and the distal articular surface is engulfed within a large overgrowth of newly formed bone. CT-scanning identifies an oblique fracture resulting from an impact, implying that the swollen portion corresponds to callus formation. The bone was still healing prior to the moment of death, although the misalignment of the fracture parts appears to have resulted in a malunion of the two fragments. During locomotion, the wrist would have suffered from a continuous weight-bearing pressure that placed stress upon the fracture site and probably caused the animal to limp and perhaps walk on three limbs.
DOI: 10.6084/m9.figshare.25562757.v1
title: Chromosome-level genome assembly of south <i>Crassostrea ariakensis</i> shed light on its taxonomic status

description: We provide the details for genome annotation of south <i>Crassostrea ariakensis</i>, including gene locations (.gff3), protein models (.pep), CDS (.cds) and exon (.exon) sequences.
DOI: 10.6084/m9.figshare.27897255.v1
title: Cubic materials from Wikipedia

description: Cubic materials from Wikipedia with all lattice parameters 5 to check if MLFFs can predict reasonable lattice constants<br>import pandas as pddata = pd.read_html("http://en.wikipedia.org/wiki/Lattice_constant")[0]data = data[ ~data["Crystal structure"].isin( [ "Hexagonal", "Wurtzite", "Wurtzite (HCP)", "Orthorhombic", "Tetragonal perovskite", "Orthorhombic perovskite", ] )]data.rename(columns={"Lattice constant (Å)": "a (Å)"}, inplace=True)<br>data["a (Å)"] = data["a (Å)"].map(float)<br>
DOI: 10.25380/iastate.16862209.v1
title: High speed imaging sequences of muzzle gas and muzzle gas/blood interactions

description: The datasets included here include high-speed shadowgraphy imaging sequences of muzzle gases evolving from some common firearm configurations including 22-caliber long rifle and 9-mm pistol configurations. In addition, muzzle gases are shown interacting with blood spatter resulting from bullet impacts in a cavity of liquid blood.<br>
DOI: 10.6084/m9.figshare.7098737.v1
title: Atlas, TGP, pathogenic variants

description: Allele age estimated using GEVA on data from the 1000 Genomes Project (TGP), for variants annotated by PolyPhen-2 and SIFT (information available through Ensembl), across all autosomes.
DOI: 10.17632/d9gmscymrg
title: Dataset

description: In this folder you will find all the tools to reproduce every tables and figures in our paper. The analysis were done with STATA 14.
DOI: 10.17632/ggb4xymxt2
title: Database related to the seasonal variability and trend analysis of the solar energy resource in Northeastern Brazilian region.

description: Database generated produced during the evaluation study on the spatial patterns, seasonal variability and trend analysis of the surface solar irradiation in the Northeastern Brazilian region by using meteorological data acquires in automated weather stations operated by the Brazilian Institute of Meteorology from 2008 till 2015.
DOI: 10.6084/m9.figshare.7910561.v1
title: gVCF_HG03629

description: 1000 Genomes gVCF mapped to hs37d5 for HG03629. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/yggpbcbm84
title: Application of finite element methods in relativistic mean-field theory: spherical nucleus

description: Abstract A C ^(++) code is used to calculate ground state properties of spherical nuclei. The nuclear system is described in the framework of relativistic mean field theory: nucleons are coupled to exchange mesons and photon through an effective Lagrangian. Finite element methods are used in the self-consistent solution of the coupled system of partial differential equations for the nucleons and for the meson fields. Using a formulation based ... Title of program: sphnucFEM.cc Catalogue Id: ADFG_v1_0 Nature of problem The ground-state of a spherical nucleus is described in the framework of relativistic mean-field theory. The model explicitly includes mesonic degrees of freedom and describes the nucleons as Dirac particles. Nucleons interact in a relativistic covariant manner through the exchange of virtual mesons: the isoscalar scalar sigma-meson, the isoscalar vector omega-meson and the isovector vector rho-meson. The model is based on the one boson exchange description of the nucleon- nucleon interaction. Versions of this program held in the CPC repository in Mendeley Data ADFG_v1_0; sphnucFEM.cc; 10.1016/S0010-4655(97)84583-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.26362180.v1
title: Supplementary Material for: Changes in mutations of cell-free DNA and liver tumor tissue in patients with advanced hepatocellular carcinoma before and after introduction of lenvatinib

description: Introduction: Cell-free DNA (cfDNA) is expected to contribute to the decision for treatment and prediction of effects with minimally invasion. We investigated the correlation between gene mutations before and after lenvatinib (LEN) treatment and its effectiveness, in order to find advanced hepatocellular carcinoma (HCC) patients who would benefit greatly from the therapy.
Methods: We analyzed cfDNA before and 6-8 weeks after the start of treatment in 20 advanced HCC patients started LEN. A next-generation sequencer was used for CTNNB1 and TP53. Concerning TERT promoter, -124C&gt;T and -146C&gt;T mutations are researched using digital PCR. In addition, we examined liver tumor biopsy tissues by the same method. CT evaluation was performed at 6-8 weeks and 3-4 months, to assess the efficacy.
Results: Frequencies of TERT promoter, CTNNB1 and TP53 mutations in pretreatment cfDNA were 45%, 65% and 65%, but 53%, 41% and 47% in HCC tissues, respectively. There were no clear correlations between these gene mutations and the disease-suppressing effect or progression-free survival. Overall, there were many cases showing a decrease in mutations after LEN treatment. Integrating the reduction of CTNNB1 and TP53 genetic mutations increased the potential for disease suppression.
Conclusion: This study suggests that analysis of cfDNA in advanced HCC patients may be useful for identifying LEN responders and determining therapeutic efficacy. Furthermore, it has potential for selecting responders for other molecular-targeted drugs.
DOI: 10.6084/m9.figshare.3554865.v1
title: Appendix B. Coefficients of the species-level regressions between functional traits and growth parameters as well as residuals of the final growth model.

description: Coefficients of the species-level regressions between functional traits and growth parameters as well as residuals of the final growth model.
DOI: 10.17632/bksgrkfmgw
title: Raw data for Bacteria require phase separation for fitness in the gut_2

description: Raw data for paper "Bacteria require phase separation for fitness in the gut". Protocols and materials used to create these data are included in the relevant paper. The data include the microscopy images and the relevant analysis of immunofluorescence experiments of Bacteroides thetaiotaomicron strains under different growth conditions.
DOI: 10.6084/m9.figshare.27225828.v1
title: MFLocator.tar

description: docker file for MFLocator第七届CCF开源创新大赛-智能开源漏洞工程赛-漏洞定位到补丁赛题
DOI: 10.6084/m9.figshare.28756316.v1
title: Supporting Table S7

description: <b>Supporting Table S7. </b>DNA Repair associated genes that are present in at least one ofthe insect endosymbionts <i>Arsenophonus nasonae</i>, <i>Wolbachia</i> (<i>w</i>Mel), and <i>Buchnera</i><i>aphidicola</i> (APS). Comparison of annotations (from BlastKoala and/or NCBI) for ten<i>Spiroplasma</i> strains (red font = Citri clade; blue font = Poulsonii clade) for genesassociated with DNA repair. Colored cells (yellow or red imply nonfunctional or absentgene). Locus tags or Protein IDs (WP) are provided for a subset of strains (mostly thenewest ones).
DOI: 10.15468/xecbma
title: Spider community in forest-coffee agricultural landscape in southwest Ethiopia

description: The dataset represents spiders' abundance and species composition in the agricultural landscape of the Gera district in the Oromia Region, southwest Ethiopia. They were collected from 40 home gardens from May to September 2011. The specimens were collected using pitfall traps during two separate months and related sample composition to land use in the vicinity (1 ha plot, local scale, field data) and tree cover within 200 and 500 m radius zones (landscape scale, satellite data). The highest spider abundances were found when either the home garden or the surrounding had high tree cover and were lower in both the most tree-rich and tree-poor landscape-garden combinations.
DOI: 10.6084/m9.figshare.17701220.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 55
DOI: 10.17632/m9bht6wb2v
title: Reported dataset on Environmental Kuznets Curve

description: Dataset includes all the papers published in Scopus database related to EKC theory during the period of 1994 to 2022. As shown in Figure 1, 18 categories were created in a table: year of publication (extracted from Scopus each papers), title of paper (extracted from Scopus or each paper), author(s) name(s) (extracted from Scopus or each paper), journal of publication (extracted from Scopus or each paper), affiliation country (extracted from Scopus or each paper), DOI (extracted from Scopus or each paper), examination country-ies (mentioned in each paper), period of included data (mentioned in each papers), independent variable(s) (mentioned in each paper), dependent variable(s) (mentioned in each paper), data source(s) (mentioned in each paper), followed methodology-ies (mentioned in each paper), shape of EK curve (Inverted U, N, Inverted N, U, monotonic and other shapes, mentioned in each papers), EKC verification (YES, NO, PARTIALLY, UNCERTAIN, mentioned in each paper), conclusion (taken from the corresponding section of documents), limitations (taken from the corresponding section and also from our analysis), proposals (taken from the corresponding section of the papers) and criticism (taken from the corresponding section and also from our analysis).
DOI: 10.17632/tz39fk3dcg
title: Karfali-VAR Model Data (1999-2034)

description: This dataset provides economic indicators for the period 1999-2034, including historical data (1999-2025) and forecasts (2026-2034) generated using the Karfali-VAR Model.

Research Reference:

Title: Extended Research: Karfali-VAR-Model Forecasts and Sensitivity Tests 2026-2034
Author: Jaouad Karfali
https://papers.ssrn.com/abstract=5180553
Data Sources
BEA: U.S. Bureau of Economic Analysis (GDP Growth)
EIA: U.S. Energy Information Administration (Oil Prices)
FRED: Federal Reserve Economic Data (S&P 500, Unemployment, Inflation, Interest Rates)
Variables
Year: Year of observation (1999-2034).
Numeric_Cycle: Economic cycle stage (1-9).
GDP_Growth (%): Annual GDP growth rate.
Oil_Price ($/barrel): Crude oil price per barrel.
S&P_500 (Year-End): S&P 500 closing value at the end of the year.
Unemployment (%): Annual unemployment rate.
Inflation (%): Annual inflation rate.
Interest_Rate (%): Central bank interest rate.
Usage
This dataset can be used for:

Economic forecasting and analysis.
Time series modeling and testing.
Policy analysis and scenario simulations.
License:
This dataset is open for research and academic use. Please cite the original SSRN research when using this data.
DOI: 10.6084/m9.figshare.24566068.v1
title: Supplementary Material for: Endoscopic treatment of colo-colonic intussusception in a patient with Peutz–Jeghers syndrome

description: A 19-year-old man with a history of Peutz–Jeghers syndrome (PJS) and two previous partial small bowel resections because of intussusception presented with lower abdominal pain. Computed tomography (CT) showed concentric multilayer and cord-like structures in the transverse colon. Colo-colonic intussusception was suspected and he was hospitalized. After two therapeutic enemas were unsuccessful, colonoscopy was performed. The intussusception was reduced and a 40 mm transverse colon polyp with a thick stalk was resected. After the procedure, his abdominal pain was relieved and he was discharged on the sixth hospital day. This case and several previous reports suggest that PJS polyps with tumor diameter exceeding 30 mm and location in the transverse or sigmoid colon can cause intussusception. Endoscopic treatment should be considered for these lesions.
DOI: 10.6084/m9.figshare.3406876.v1
title: Calibration, validation and uncertainty quantification

description: This project contains code for processing raw spheroid growth data and for inferring the parameters of simple mathematical models of avascular tumour growth using such data. We also include code for checking for discrepancies between the calibrated models and the data, for checking the validity of those models and for making ensemble forward predictions of tumour growth using the calibrated models. Each of the main scripts contains a short description of what the script aims to accomplish.
DOI: 10.17632/yxc6zd9kgc
title: Data on saturation measurements of the Kisiljevo quartz

description: The file contains the original analysed data from the performed saturation test on the Kisiljevo LPS quartz
DOI: 10.6084/m9.figshare.5907661.v1
title: Sports Practices and Cardiovascular Risk in Teenagers

description: Abstract Background: Cardiovascular diseases are the leading cause of deaths in the world, and many events could be prevented by healthy life habits. Objectives: To compare the occurrence of cardiovascular risk factors in adolescents enrolled at public schools in the city of Rio de Janeiro, including a renowned school for sport practices. Methods: Cross-sectional study, convenience sampling of 422 students enrolled at the Experimental Olympic Gymnasium (EOG) and at Figueiredo Pimentel School (FP). Using descriptive analyses, continuous variables were expressed as mean and standard deviation or median and interquartile ranges, and the Student's t-test or the chi-square test, respectively, was used for comparisons. The sports were classified according to the metabolic equivalent of task (MET) (below or above 5). Results: We included 274 students enrolled at the EOG and 148 at FP. Mean age was similar between schools -12.5 ± 1.6 years at FP and 12.6 ± 0.9 at the EOG; 65.5% of the students at FP and 43.8% of the students at the EOG were female (p &lt; 0.01). Significant differences in the prevalence of hypertension (20% vs. 6.3%, p &lt; 0.01) and borderline cholesterol levels (27.7% vs. 17.3%, p = 0.01) were found between FP and EOG students, respectively. Conclusion: High prevalence of hypertension, overweight/obesity and altered blood lipid profile was found in this group of adolescents. Regular sports training program combined with little influence of their eating habits outside school may contribute to a better metabolic profile and reduction in cardiovascular risk factors in students. Public health measures are also need.
DOI: 10.17632/5ygfnsjg24
title: de-icing

description: It is optimization result of JDPATS model under different snow conditions.
DOI: 10.17632/fvns2dk5rb
title: Data for: Fluid inclusion evidence for low-temperature thermochemical sulfate reduction (TSR) of dry coal gas in Upper Permian carbonate reservoirs (Zechstein, Ca2) in the North German Basin