cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.31434748
title: Smoothed Quantile Regression for Spatial Data

description: Existing methods for spatial data often struggle to capture heterogeneous patterns over complex domains or ignore heterogeneity in the tails of the response distribution. We introduce a quantile spatial model framework that accommodates both spatial nonstationarity and tail heterogeneity through constant and spatially varying coefficients. We propose a smoothed quantile bivariate triangulation (SQBiT) method based on penalized splines on triangulation and convolution smoothing of the quantile loss. The developed method can effectively capture spatial nonstationarity while preserving critical data features such as shape and smoothness across complex and irregular domains. Under some regularity conditions, we show that the proposed estimator can achieve an optimal convergence rate under the L2-norm. In addition, we establish the Bahadur representation of the estimator, which allows us to establish the asymptotic normality for the constant coefficient estimator and construct asymptotic confidence intervals. To improve finite-sample performance, we also consider a wild bootstrap method for constructing confidence intervals. Simulations highlight the numerical and computational advantages of SQBiT over existing methods. Applying SQBiT to U.S. mortality data reveals how socioeconomic factors influence mortality rates differently across spatial regions and distribution tails. An R package implementing SQBiT is available on GitHub.
DOI: 10.6084/m9.figshare.31434748.v1
title: Smoothed Quantile Regression for Spatial Data

description: Existing methods for spatial data often struggle to capture heterogeneous patterns over complex domains or ignore heterogeneity in the tails of the response distribution. We introduce a quantile spatial model framework that accommodates both spatial nonstationarity and tail heterogeneity through constant and spatially varying coefficients. We propose a smoothed quantile bivariate triangulation (SQBiT) method based on penalized splines on triangulation and convolution smoothing of the quantile loss. The developed method can effectively capture spatial nonstationarity while preserving critical data features such as shape and smoothness across complex and irregular domains. Under some regularity conditions, we show that the proposed estimator can achieve an optimal convergence rate under the L2-norm. In addition, we establish the Bahadur representation of the estimator, which allows us to establish the asymptotic normality for the constant coefficient estimator and construct asymptotic confidence intervals. To improve finite-sample performance, we also consider a wild bootstrap method for constructing confidence intervals. Simulations highlight the numerical and computational advantages of SQBiT over existing methods. Applying SQBiT to U.S. mortality data reveals how socioeconomic factors influence mortality rates differently across spatial regions and distribution tails. An R package implementing SQBiT is available on GitHub.
DOI: 10.25549/satjrnl-c1-3320
title: Pulemet, no. 1 (1905)

description: [description (english with transliteration)] Pulemet [Machine-Gun], no.1, [1905]. Published and edited by N.G. Shebuev. St. Petersburg. Typography: "Trud." Text by: N. Shebueva. Illustrations by: I. Grabovskogo. Satirical journal. A facsimile of this issue also came out in a smaller format - the so called "Finland Pulemet." This first issue was confiscated, and N.G. Shebuev was convicted and sentenced to one year in prison -- Rudzinskii, no. 89; BPIR, no. 6598.
DOI: 10.25549/satjrnl-ouc112745491
title: Pulemet, no. 3 (1905)

description: [description (english with transliteration)] Pulemet [Machine-Gun], no. 3, [1905]. Published and edited by N.G. Shebuev. St. Petersburg. Typography: "Trud." Text and themes by: N. Shebuev. Satirical journal -- Rudzinskii, no. 89; BPIR, no. 6598.
DOI: 10.25549/satjrnl-ouc112746041
title: Pulemet, Special issue (1905)

description: [description (english with transliteration)] Pulemet [Machine-Gun], special issue, December 3, [1905]. Published and edited by N.G. Shebuev. St. Petersburg. Typography: "Trud." Тext by prisoner N. Shebuev and prosecutor P. Kamyshenskii. Satirical journal -- Rudzinskii, no. 89; BPIR, no. 6598.
DOI: 10.17605/osf.io/3ydw9
title: Evaluation Data of Anti-Phishing Learning Games

description: German research project ERBSE (Enable risk-aware behavior to secure end-users) on the development of anti-phishing learning games and integration of personalized learning game content. Focus on comparative evaluation of different game prototypes utilizing different game mechanics as well as personalization.
DOI: 10.5281/zenodo.18806724
title: Ambient light drives verteporfin-induced protein cross-linking during standard laboratory sample processing

description: This dataset accompanies the manuscript: Ambient light drives verteporfin-induced protein cross-linking during standard laboratory sample processing. Verteporfin (VP), a benzoporphyrin photosensitizer widely used as a pharmacological inhibitor of the YAP–TEAD transcriptional complex, induces high-molecular-weight complex (HMWC) formation, apparent YAP depletion, and cytotoxicity that are predominantly photochemical artifacts arising from ambient light exposure during standard laboratory procedures. This dataset provides all primary data supporting the manuscript conclusions.
DOI: 10.5281/zenodo.18806723
title: Ambient light drives verteporfin-induced protein cross-linking during standard laboratory sample processing

description: This dataset accompanies the manuscript: Ambient light drives verteporfin-induced protein cross-linking during standard laboratory sample processing. Verteporfin (VP), a benzoporphyrin photosensitizer widely used as a pharmacological inhibitor of the YAP–TEAD transcriptional complex, induces high-molecular-weight complex (HMWC) formation, apparent YAP depletion, and cytotoxicity that are predominantly photochemical artifacts arising from ambient light exposure during standard laboratory procedures. This dataset provides all primary data supporting the manuscript conclusions.
DOI: 10.15468/hbp684
title: Monotropa callistoma (Ericaceae), a new species based on morphological and molecular evidence from Hunan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wei, Ze, Liu, Li-Jia, Xuan, Jing, Mo, Zhi-Qiong, Ou Yang, Wen-Xiang, Liu, Bing, Li, Min, Wang, Qiang (2026): Monotropa callistoma (Ericaceae), a new species based on morphological and molecular evidence from Hunan, China. PhytoKeys 271: 145-160, DOI: 10.3897/phytokeys.271.177609AbstractThe subfamily Monotropoideae (Ericaceae) comprises unique non-photosynthetic and mycoheterotrophic plants. Their extensive morphological reduction often poses significant challenges for species delimitation. In this study, we investigated an unknown Monotropa taxon collected from Hunan Province, China, through an integrative approach combining detailed morphological observation and phylogenetic analysis. We sequenced it, assembled the complete plastid genome and reconstructed phylogenetic trees using both chloroplast genomes and the nrITS region. Morphologically, this new entity is readily distinguished from its congener, Monotropa uniflora, by several key characteristics: 4–5 glabrous petals apically one-quarter orange and basally three-quarters white, 8–10 stamens with glabrous filaments, a nodding berry at maturity and a distinctly earlier flowering period (March – June vs. June – October). Phylogenetic reconstructions, based on both chloroplast genomes and nrITS data, consistently resolved this unknown taxon as a distinct lineage, clearly separating it from M. uniflora with strong support. Integrating evidence from morphology, phylogeny and phenology, we hereby describe it as a new species, Monotropa callistoma.
DOI: 10.25549/satjrnl-ouc112746054
title: Satira, no. 2 (1906)

description: [description (english with transliteration)] Satira [Satire], no. 2, 1906. Weekly. Published by A.V. Dedenev. Edited by V.M. Arnol'd. St. Petersburg. Typography: "Vladimirskaia tipolitografiia [typolithography]." Artistic organ of political and social satire -- Rudzinskii, no. 92; BPIR, no. 7149.
DOI: 10.17605/osf.io/rc5fu
title: Persistent auditory consequences of COVID-19: A Manchester research study (PACCMan)

description: This repository contains materials associated with the manuscript: 

A. S. Visram, I. R. Jackson, H. Guest, C. J. Plack, S. Brij, N. Chaudhuri & K. J. Munro (2023) Pre-registered controlled comparison of auditory function reveals no difference between hospitalised adults with and without COVID-19, International Journal of Audiology, DOI: 10.1080/14992027.2023.2213841 

The repository contains de-identified data from the project, as well as R code for reproducing all data processing, analyses, and figures.
DOI: 10.15468/dl.yavmtd
title: Occurrence Download

description: A dataset containing 799563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypericum perforatum",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 799563 records from 3916 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002968-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9jq-k1a-snb
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k0h-exs-7l8
title: Spiticeras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c5d-c6s-3q9
title: Isurus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gzf-hhs-5wy
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xkk-vn0-szt
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hds-rlj-mls
title: †Columastrea antiqua (Gerth, 1928)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wvn-9zp-hdm
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5zc-m5d-05g
title: †Monoceratina Roth, 1928

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.kkb5sa
title: Occurrence Download

description: A dataset containing 1918 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ageratum houstonianum",
 "Country is Nepal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1918 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020713-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/fkh-adk-jak
title: Rangifer tarandus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xv0-n6d-4eh
title: Loxoconcha rhomboidea (Fischer, 1855)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8q7-vfv-g2q
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b02-rz3-hdx
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fst-tls-m2n
title: Isurus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l23-qgm-fmk
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/021-64y-4cp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b0q-k28-rpr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g8p-0e1-7ye
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zgf-abf-7qp
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8et-26x-nwd
title: Rangifer tarandus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vpy-v06-29w
title: Odontaspis

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s25-t04-eje
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a2b-zxs-my4
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a2d-b5s-mdq
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/256-0kp-er3
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rms-3x2-h42
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hj0-gj5-858
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ywf-q5t-pk4
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5td-1a8-dq4
title: Raja

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m38-6b2-np8
title: Ostracoda Latreille, 1802

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8vf-y87-eka
title: Tellina Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/emv-nn2-392
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2tc-qf2-gsn
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pwf-jnd-8zs
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y8y-lc4-pg3
title: Isurus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7g2-mb8-bmb
title: Rangifer tarandus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ypp-9pd-wnq
title: Ptychophylloceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/er5-fk4-zz7
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q8d-0xm-0w0
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0eq-2pn-fs8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0x5-pd0-syc
title: †Ptychophylloceras ptychoicum (Quenstedt, 1845)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4r7-354-y6n
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2d1-tp8-66r
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v2x-x3z-44j
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8gt-4et-faj
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w1g-649-5rz
title: Ptychophylloceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/96f-kgv-l3c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/79t-8ff-66k
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y0w-0qr-1ye
title: Canis lupus familiaris Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dsy-2qg-1f3
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n0k-hly-a1f
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4ts-1q4-dtg
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rz9-0lf-zb9
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.5twxsc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polyplacophora)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((90 60,100 60,100 70,90 70,90 60))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019693-251009101135966/datasets/export for details.
DOI: 10.15468/dl.dfvwvr
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "TaxonKey is Tillandsia duratii saxatilis"
 ]
}

 The dataset includes 107 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019690-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kv67k
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Piscidia piscipula)",
 "StateProvince is one of (Bahamas, Belize, Cayman Is., Cuba, Dominican Republic, Florida, Guatemala, Honduras, Jamaica, Mexico Central, Mexico Gulf, Mexico Northeast, Mexico Southeast, Mexico Southwest, Panama, Southwest Caribbean, Venezuelan Antilles)",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 374 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019689-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jf28x8
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Nisaetus nanus (Wallace, 1868)",
 "Year 2000-2024"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080714-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckzr2p
title: Occurrence Download

description: A dataset containing 3447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "HasCoordinate is false",
 "HasGeospatialIssue is false",
 "FamilyKey is Diapensiaceae"
 ]
}

 The dataset includes 3447 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080715-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqkkw5
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Nycticebus bengalensis (Lacépède, 1800)",
 "Year 2000-2024"
 ]
}

 The dataset includes 36 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080716-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d76njq
title: Occurrence Download

description: A dataset containing 477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coreopsis pubescens Elliott)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 477 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080717-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21200575
title: Concurrent loss of LKB1 and KEAP1 enhances SHMT-mediated antioxidant defense in KRAS-mutant lung cancer

description: Non-small cell lung cancer (NSCLC) with concurrent mutations in KRAS and the tumor suppressor LKB1 (KL NSCLC) is refractory to most therapies and has the worst predicted outcomes. Using human NSCLC metabolomics data, we uncovered upregulation of serine-glycine one carbon (SGOC) metabolism via serine hydroxymethyltransferase (SHMT) in KL NSCLC. A previous study in murine pancreatic tumor showed that the LKB1-AMPK axis inhibits SGOC which is necessary for DNA methylation. Here we report that in NSCLC, LKB1 impedes SGOC through SIK, not AMPK, and one carbon units are required for antioxidant defense, not epigenetic regulation. SHMT suppression increased cellular sensitivity to oxidative stress and cell death. Further, the SHMT inhibitor SHIN2 enhanced the therapeutic efficacy of paclitaxel (first-line NSCLC therapy inducing ROS) in KL tumor growth in vivo. The data reveal tissue-of-origin as an important determinant of how cancers fulfill their metabolic requirements and provide insight into therapeutic strategies for KL NSCLC.
DOI: 10.6084/m9.figshare.23574414.v1
title: Virus data

description: The dataset contains all the data in the manuscript. Details of data collection have been described in the Material and Method section.