cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ctyx59p5rh.1
title: Histological, behavioural and flow cytometric datasets relating to acute ischaemic stroke in young, aged and ApoE-/- mice in the presence and absence of immunomodulation with fingolimod.

description: In this work, the sphingosine-1-phosphate receptor modulator fingolimod was assessed as a preclinical candidate for the treatment of acute ischaemic stroke according to the Stroke Therapy Academic Industry Roundtable (STAIR) preclinical recommendations. Young (15-17 weeks), aged (72-73 weeks), and ApoE-/- mice (20-21 weeks) fed a high fat diet (all C57BL/6 mice) underwent permanent electrocoagulation of the left middle cerebral artery. Mice received either saline or fingolimod (0.5 mg/kg or 1 mg/kg) at 2, 24, and 48 hours post-ischaemia via intraperitoneal (i.p.) injection. Another cohort of young mice (8-9, 17-19 weeks) received short-term (5 days) or long-term (10 days) fingolimod (0.5 mg/kg) treatment in a treatment duration study. For young, aged, and ApoE-/- mice, motor behavioural tests (cylinder and grid-walking) were performed at days 0, 3, and 7 post-ischaemia to evaluate neurobehavioural recovery. In the treatment duration study, the grid-walking test was performed at days 0, 2, 5 and 10 post-ischaemia. Brain tissue sections were stained with haematoxylin and eosin (H&E), and NeuN to quantify tissue damage. Flow cytometry was used to quantify T cell populations in blood, spleen, and lymph nodes. The data presented in this article improves our understanding of the potential neuroprotective and immunomodulatory effects of fingolimod in a mouse model of brain ischaemia. Such data may be significant in the design of future preclinical and clinical stroke studies for fingolimod.
DOI: 10.17632/f7ts84m8wb.2
title: Data for: Winter Equatorial Warming in Martian Upper Atmosphere from MAVEN densities

description: Dataset for the publication "Winter Equatorial Warming in Martian Upper Atmosphere from MAVEN densities" by Liu et al. The dataset is the simulation results of Laboratoire de Météorologie Dynamique‐Mars General Circulation Model (LMD-MGCM) under MY25 dust scenario, which includes Martian month 10, 11, and 12. The results are all .nc files that can be read and used by multiple-software such as NOAA ferret. Each of .nc file are organized with lat-lon-alt-time, which includes density (kg/m^3), temperature (K), zonal winds U (m/s), and meridional winds V (m/s) from Mars surface up to 260 km. The dataset includes three folders with the simulation results .nc. , the control def files for running the simulation as well as the average densities from observations. Folder01: simulation results The .nc files are named like diagfiXX_A.nc. XX is the Martian month; _A means the altitude have been normalized to km. The 10ls1.txt are for the longitudinal average of the LMD-MGCM density for month 10 abstracted form diagfi10_A. nc by Ferret order “list”. # 12 martian months (=30 deg Ls) of unequal length (excentric orbit) Length of sols/ month /61/ #1 /66/ #2 /66/ #3 /65/ #4 /60/ #5 /54/ #6 /50/ #7 /46/ #8 /47/ #9 /47/ #10 /51/ #11 /56/ #12 Folder02: def files def files for the LMD-MGCM simulation Folder03: averaged densities Averaged densities from NGIMS and ACC. This work made use of the High Performance Computing Resource in the Core Facility for Advanced Research Computing at Shanghai Astronomical Observatory.
DOI: 10.6084/m9.figshare.14371715.v3
title: Automatic collection method for street-side objects in street view relying on sight-ray constraint rules

description: The project code and data related to the paper are provided. The Code.zip code can be run directly in the NetFrameWork4.5.2. Data.zip is related data. Tree.csv provides data sorting in Data. Tree_shapefile_Format.zip provides the shapefile visualization results of the data. Data description.txt is the description of related data.
DOI: 10.17632/33dx4p8d4n.1
title: Autophagosome content profiling using proximity biotinylation proteomics coupled to protease digestion in mammalian cells

description: The ascorbate peroxidase APEX2 is commonly used to study the neighborhood of a protein of interest by proximity-dependent biotinylation. Here, we describe a protocol for sample processing compatible with immunoblotting and mass spectrometry that is suitable to specifically map the content of autophagosomes and potentially other short-lived endomembrane transport vesicles without the need of subcellular fractionation. By combining live-cell biotinylation with proteinase K digestion of cell homogenates, proteins enriched in membrane-protected compartments can be readily enriched and identified. For complete details on the use and execution of this protocol, please refer to (Zellner et al., 2021).
DOI: 10.17632/cfdv85gmv5.1
title: Supplemental information for "Biomarkers predictive of severe complications and mortality in patients with dipeptidyl peptidase-4 inhibitor-associated bullous pemphigoid: a retrospective longitudinal observational study"

description: Contents: Supplemental Methods and Legends Supplemental Fig 1 Supplemental Fig 2 Supplemental Fig 3
DOI: 10.5281/zenodo.4607289
title: Dataset of tactile signatures of the human hand in twenty one activities of daily living

description: This dataset contains the tactile data corresponding to 22 subjects, 12 women and 10 men, performing 21 different activities of daily living. The dataset was obtained using the Grip System, with sensor 4256E from Tekscan, Inc., USA. The tasks corresponded to common activities of daily living (ADL), selected to cover most of the areas related to hand function of the different chapters of the International Classification of Functioning, Disability and Health (ICF). This open dataset is, to our knowledge, the largest and most diverse database with tactile information of the human hand in ADL. The file 'dataset description.pdf' contains detailed information about the contents of the dataset.
description: We wish to thank the Spanish Ministry of Economy and Competitiveness and FEDER through projects DPI2014-60635-R, DPI2017-89910-R.
DOI: 10.5281/zenodo.4607288
title: Dataset of tactile signatures of the human hand in twenty one activities of daily living

description: This dataset contains the tactile data corresponding to 22 subjects, 12 women and 10 men, performing 21 different activities of daily living. The dataset was obtained using the Grip System, with sensor 4256E from Tekscan, Inc., USA. The tasks corresponded to common activities of daily living (ADL), selected to cover most of the areas related to hand function of the different chapters of the International Classification of Functioning, Disability and Health (ICF). This open dataset is, to our knowledge, the largest and most diverse database with tactile information of the human hand in ADL. The file 'dataset description.pdf' contains detailed information about the contents of the dataset.
description: We wish to thank the Spanish Ministry of Economy and Competitiveness and FEDER through projects DPI2014-60635-R, DPI2017-89910-R.
DOI: 10.34740/kaggle/ds/1236052
title: Hey Kili
DOI: 10.5281/zenodo.4666896
title: Metabolic Parameters in Patients with Suspected Reactive Hypoglycemia

description: Dataset from accepted paper entitle: "Metabolic Parameters in Patients with Suspected Reactive Hypoglycemia" by Hall et al. (2021).
DOI: 10.5281/zenodo.4666895
title: Metabolic Parameters in Patients with Suspected Reactive Hypoglycemia

description: Dataset from accepted paper entitle: "Metabolic Parameters in Patients with Suspected Reactive Hypoglycemia" by Hall et al. (2021).
DOI: 10.5281/zenodo.3931226
title: Photoisomeric MTV data for Poiseuille flow with CCVJ

description: The data refers to experiments with the molecular rotor 9-(2-Carboxy-2-cyanovinyl) (CCVJ) in ethylene glycol and analysis of its suitability for use in photoisomeric Molecular Tagging Velocimetry (MTV). The data is structured in zip packages for the different experiments. The packages are structured following the published article, where detailed information on the experimental setup can be found. Each zip package contains a separate README with detailed information on the data structure. The six packages contain: Diffusion coefficient: Measurement for the determination of the diffusion coefficient High time difference: Measurements of a Poiseuillle flow with the maximal duration up to 720s Methyl-beta-CD: Flow measurements with different concentration of Methyl-beta-cyclodextrin Poiseuille flow: Measurements of a Poiseuille flow up to 200s Recovery time constant: Measurements for the determination of the recovery time constant τ<sub>rec</sub> Tagging time constant: Measurements for the determination of the tagging time constant τ<sub>tag</sub> Version 2.0.0 includes updated data for the diffusion coefficient experiments.
DOI: 10.6084/m9.figshare.14380715
title: A global annual vegetation phenology dataset derived from AVHRR for 1982–2019 by implementing multiple phenology retrieving methods

description: This global phenology product (AVH12) provides science data sets (SDSs) that map global land surface phenology metrics at 0.05 degrees spatial resolution and annual time step. The phenology metrics are derived from time series of the 2-band Enhanced Vegetation Index calculated from AVHRR Version 5 LTDR land surface reflectance data (AVH09C1).
DOI: 10.6084/m9.figshare.14380715.v1
title: AVH12_20210407.zip

description: This global phenology product (AVH12) provides science data sets (SDSs) that map global land surface phenology metrics at 0.05 degrees spatial resolution and annual time step. The phenology metrics are derived from time series of the 2-band Enhanced Vegetation Index calculated from AVHRR Version 5 LTDR land surface reflectance data (AVH09C1).
DOI: 10.5281/zenodo.4656896
title: Body composition measurement percentiles for boys and girls aged 2 to 17 years

description: Detailed body composition percentile tables from children aged 2 to 17 years. A full publication describing detailed methodology is available: Van Eyck, A., Eerens, S., Trouet, D. <em>et al.</em> Body composition monitoring in children and adolescents: reproducibility and reference values. <em>Eur J Pediatr</em> (2021). https://doi.org/10.1007/s00431-021-03936-0 Here, we specifically publish the detailed Excel table called ‘PercentileTablesVanEyck_etal’, including the following data in separate tabs: percentiles from 0.5 to 99.5% per age year for: Body mass index:<br> BMI_Boys<br> BMI_Girls Waist:<br> Waist_Boys<br> Waist_Girls Fat Mass<br> Fat_Boys<br> Fat_Girls Lean Tissue Mass<br> LTM_Boys<br> LTM_Girls Extracellular Water<br> ECW_Boys<br> ECW_Girls Intracellular Water<br> ICW_Boys<br> ICW_Girls Total Body Water<br> TBW_Boys<br> TBW_Girls<br>
DOI: 10.5281/zenodo.4656895
title: Body composition measurement percentiles for boys and girls aged 2 to 17 years

description: Detailed body composition percentile tables from children aged 2 to 17 years. A full publication describing detailed methodology is available: Van Eyck, A., Eerens, S., Trouet, D. <em>et al.</em> Body composition monitoring in children and adolescents: reproducibility and reference values. <em>Eur J Pediatr</em> (2021). https://doi.org/10.1007/s00431-021-03936-0 Here, we specifically publish the detailed Excel table called ‘PercentileTablesVanEyck_etal’, including the following data in separate tabs: percentiles from 0.5 to 99.5% per age year for: Body mass index:<br> BMI_Boys<br> BMI_Girls Waist:<br> Waist_Boys<br> Waist_Girls Fat Mass<br> Fat_Boys<br> Fat_Girls Lean Tissue Mass<br> LTM_Boys<br> LTM_Girls Extracellular Water<br> ECW_Boys<br> ECW_Girls Intracellular Water<br> ICW_Boys<br> ICW_Girls Total Body Water<br> TBW_Boys<br> TBW_Girls<br>
DOI: 10.5281/zenodo.4667690
title: Jobs (DAG workflow) and tasks dataset with near 50k job instances and 1.3 Millions of tasks.

description: This dataset contains detailed information about more than 50 thousand jobs with 1.3 million tasks. This dataset can be used in various simulation, training, verification and modelling processes. various information about each job is recorded and the underlying environment was based on IoT/Fog/Cloud in which IoT nodes only generate requests and Fog and Cloud nodes process these requests.
DOI: 10.5281/zenodo.4667689
title: Jobs (DAG workflow) and tasks dataset with near 50k job instances and 1.3 Millions of tasks.

description: This dataset contains detailed information about more than 50 thousand jobs with 1.3 million tasks. This dataset can be used in various simulation, training, verification and modelling processes. various information about each job is recorded and the underlying environment was based on IoT/Fog/Cloud in which IoT nodes only generate requests and Fog and Cloud nodes process these requests.
DOI: 10.6084/m9.figshare.14380871
title: Supplementary Material for: The Efficacy of Etoposide-Based Therapy in Adult Secondary Hemophagocytic Lymphohistiocytosis

description: Data supporting the use of etoposide-based therapy in hemophagocytic lymphohistiocytosis (HLH) arise largely from pediatric studies. There is a lack of comparable data among adult patients with secondary HLH. We conducted a retrospective study to assess the impact of etoposide-based therapy on outcomes in adult secondary HLH. The primary outcome was overall survival. The log-rank test was used to compare Kaplan-Meier distributions of time-to-event outcomes. Multivariable Cox proportional hazards modeling was used to estimate adjusted hazard ratios (HRs) with 95% confidence intervals (CIs). Ninety adults with secondary HLH seen between January 1, 2009, and January 6, 2020, were included. Forty-two patients (47%) received etoposide-based therapy, while 48 (53%) received treatment only for their inciting proinflammatory condition. Thirty-three patients in the etoposide group (72%) and 32 in the no-etoposide group (67%) died during follow-up. Median survival in the etoposide and no-etoposide groups was 1.04 and 1.39 months, respectively. There was no significant difference in survival between the etoposide and no-etoposide groups (log-rank <i>p</i> = 0.4146). On multivariable analysis, there was no association between treatment with etoposide and survival (HR for death with etoposide = 1.067, 95% CI: 0.633–1.799, <i>p</i> = 0.8084). Use of etoposide-based therapy was not associated with improvement in outcomes in this large cohort of adult secondary HLH patients.
DOI: 10.6084/m9.figshare.14380871.v1
title: Supplementary Material for: The Efficacy of Etoposide-Based Therapy in Adult Secondary Hemophagocytic Lymphohistiocytosis

description: Data supporting the use of etoposide-based therapy in hemophagocytic lymphohistiocytosis (HLH) arise largely from pediatric studies. There is a lack of comparable data among adult patients with secondary HLH. We conducted a retrospective study to assess the impact of etoposide-based therapy on outcomes in adult secondary HLH. The primary outcome was overall survival. The log-rank test was used to compare Kaplan-Meier distributions of time-to-event outcomes. Multivariable Cox proportional hazards modeling was used to estimate adjusted hazard ratios (HRs) with 95% confidence intervals (CIs). Ninety adults with secondary HLH seen between January 1, 2009, and January 6, 2020, were included. Forty-two patients (47%) received etoposide-based therapy, while 48 (53%) received treatment only for their inciting proinflammatory condition. Thirty-three patients in the etoposide group (72%) and 32 in the no-etoposide group (67%) died during follow-up. Median survival in the etoposide and no-etoposide groups was 1.04 and 1.39 months, respectively. There was no significant difference in survival between the etoposide and no-etoposide groups (log-rank <i>p</i> = 0.4146). On multivariable analysis, there was no association between treatment with etoposide and survival (HR for death with etoposide = 1.067, 95% CI: 0.633–1.799, <i>p</i> = 0.8084). Use of etoposide-based therapy was not associated with improvement in outcomes in this large cohort of adult secondary HLH patients.
DOI: 10.5281/zenodo.4647824
title: A living catalogue of artificial intelligence datasets and benchmarks for medical decision making

description: We provide a comprehensive curated catalogue of <strong>artificial intelligence datasets</strong> and <strong>benchmarks for medical decision making</strong>. At the time of first release (April 2021), the dataset contains more than 400 biomedical and clinical datasets of which 252 are publicly available or available upon request. The dataset was combiled based on a systematic literature review covering both biomedical and computer science literature and grey literature data sources. All datasets were manually systematized and annotated for meta-information, such as: Availability and licensing information Type of source data Links to source publications, main references or dataset repositories Benchmark dataset were additionally annotated for the following information: Associated task Performance metrics commonly used for evaluation Clinical relevance The availability of data splits In addition to the versioned TSV file on Zenodo, the dataset can also be explored live via this Google Spreadsheet. The dataset is intended as a living, extendable resource. Edit suggestions and additions are encouraged and can be submitted via the comment function of the Google sheet. <strong>File descriptions</strong> <em>annotated-datasets.tsv</em> -- contains the annotated datasets <em>arXiv-literature-export.tsv</em> -- contains the original literature record export from arXiv <em>pubmed-literature-export.tsv</em> -- contains the original literature record export from PubMed
DOI: 10.6084/m9.figshare.14380931
title: Supplementary Material for: Nasal High-Frequency Oscillatory Ventilation in Preterm Infants with Moderate Respiratory Distress Syndrome: A Multicenter Randomized Clinical Trial

description: <b><i>Objective:</i></b> To determine whether nasal high-frequency oscillatory ventilation (NHFOV) as a primary mode of respiratory support as compared with nasal continuous airway pressure (NCPAP) will reduce the need for invasive mechanical ventilation in preterm infants (26<sup>0/7</sup>–33<sup>6/7</sup> weeks of gestational age [GA]) with respiratory distress syndrome (RDS). <b><i>Methods:</i></b> This multicenter randomized controlled trial was conducted in 18 tertiary neonatal intensive care units in China. A total of 302 preterm infants born at a GA of 26<sup>0/7</sup>–33<sup>6/7</sup> weeks with a diagnosis of RDS were randomly assigned to either the NCPAP (<i>n</i> = 150) or the NHFOV (<i>n</i> = 152) group. The primary outcome was the need for invasive mechanical ventilation during the first 7 days after birth. <b><i>Results:</i></b> Treatment failure occurred in 15 of 152 infants (9.9%) in the ­NHFOV group and in 26 of 150 infants (17.3%) in the NCPAP group (95% CI of risk difference: −15.2 to 0.4, <i>p =</i> 0.06). In the subgroup analysis, NHFOV resulted in a significantly lower rate of treatment failure than did NCPAP in the strata of 26<sup>+0/7</sup>–29<sup>+6/7</sup>weeks of GA (11.9 vs. 32.4%, 95% CI of risk difference: −39.3 to −1.7, <i>p =</i> 0.03) and birth weight &lt;1,500 g (10.4 vs. 29.6%, 95% CI of risk difference: −33.8 to −4.6, <i>p =</i> 0.01). The rate of thick secretions causing an airway obstruction was higher in the NHFOV group than in the NCPAP group (13.8 vs. 5.3%, 95% CI of risk difference: 1.9–15.1, <i>p =</i> 0.01). No significant differences in other secondary outcomes were found between the NHFOV and NCPAP groups. <b><i>Conclusions:</i></b> NHFOV was not superior to NCPAP with regard to the primary outcome when applied as the primary respiratory support for RDS in infants between 26<sup>+0/7</sup> and 33<sup>+6/7</sup> weeks of GA. In the subgroup analysis, NHFOV seemed to improve effectiveness than NCPAP in preterm infants &lt;30 weeks of GA.
DOI: 10.6084/m9.figshare.14371715
title: Automatic collection method for street-side objects in street view relying on sight-ray constraint rules

description: The project code and data related to the paper are provided. The Code.zip code can be run directly in the NetFrameWork4.5.2. Data.zip is related data. Tree.csv and Pano.csv are the target location of the test data and the street view location data. Tree_shapefile_Format.zip provides the shapefile visualization results of the data. Data description.txt is the description of related data.
DOI: 10.6084/m9.figshare.14371715.v5
title: Automatic collection method for street-side objects in street view relying on sight-ray constraint rules

description: The project code and data related to the paper are provided. The Code.zip code can be run directly in the NetFrameWork4.5.2. Data.zip is related data. Tree.csv and Pano.csv are the target location of the test data and the street view location data. Tree_shapefile_Format.zip provides the shapefile visualization results of the data. Data description.txt is the description of related data.
DOI: 10.6084/m9.figshare.14371715.v4
title: Automatic collection method for street-side objects in street view relying on sight-ray constraint rules

description: The project code and data related to the paper are provided. The Code.zip code can be run directly in the NetFrameWork4.5.2. Data.zip is related data. Tree.csv and Pano.csv are the target location of the test data and the street view location data. Tree_shapefile_Format.zip provides the shapefile visualization results of the data. Data description.txt is the description of related data.
DOI: 10.6084/m9.figshare.14380961
title: Supplementary Material for: Epidemiology of COVID-19 Infection in Hospitalized End-Stage Kidney Disease Patients in a Predominantly African-American Population

description: <b><i>Background:</i></b> End-stage kidney disease patients on dialysis are particularly susceptible to COVID-19 infection due to comorbidities, age, and logistic constraints of dialysis making social distancing difficult. We describe our experience with hospitalized dialysis patients with COVID-19 and factors associated with mortality. <b><i>Methods:</i></b> From March 1, 2020, to May 31, 2020, all dialysis patients admitted to 4 Emory Hospitals and tested for COVID-19 were identified. Sociodemographic information and clinical and laboratory data were obtained from the medical record. Death was defined as an in-hospital death or transfer to hospice for end-of-life care. Patients were followed until discharge or death. <b><i>Results:</i></b> Sixty-four dialysis patients with COVID-19 were identified. Eighty-four percent were African-American. The median age was 64 years, and 59% were males. Four patients were on peritoneal dialysis, and 60 were on hemodialysis for a median time of 3.8 years, while 31% were obese. Fever (72%), cough (61%), and diarrhea (22%) were the most common symptoms at presentation. Thirty-three percent required admission to intensive care unit, and 23% required mechanical ventilation. The median length of stay was 10 days, while 11 patients (17%) died during hospitalization and 17% were discharged to a temporary rehabilitation facility. Age &gt;65 years (RR 13.7, CI: 1.9–100.7), C-reactive protein &gt;100 mg/dL (RR 8.3, CI: 1.1–60.4), peak D-dimer &gt;3,000 ng/mL (RR 4.3, CI: 1.03–18.2), bilirubin &gt;1 mg/dL (RR 3.9, CI: 1.5–10.4), and history of peripheral vascular disease (RR 3.2, CI: 1.2–9.1) were associated with mortality. Dialysis COVID-19-infected patients were more likely to develop thromboembolic complications than those without COVID-19 (RR 3.7, CI: 1.3–10.1). <b><i>Conclusion:</i></b> In a predominantly African-American population, the mortality of end-stage kidney disease patients admitted with COVID-19 infection was 17%. Age, C-reactive protein, D-dimer, bilirubin, and history of peripheral vascular disease were associated with worse survival.