cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5883/bold:aau8570
title: Overview of Barcode Index Number - BOLD:AAU8570

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8571
title: Overview of Barcode Index Number - BOLD:AAU8571

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8573
title: Overview of Barcode Index Number - BOLD:AAU8573

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8574
title: Overview of Barcode Index Number - BOLD:AAU8574

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8575
title: Overview of Barcode Index Number - BOLD:AAU8575

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8576
title: Overview of Barcode Index Number - BOLD:AAU8576

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5281/zenodo.10513541
title: Data for: Food-washing monkeys recognize the law of diminishing returns
DOI: 10.5281/zenodo.13748538
title: Updated Data for: Food-washing monkeys recognize the law of diminishing returns

description: This is a new version draft of the data files for "Food washing monkeys recognize the law of diminishing returns" by Rosien et al. 

The original reviewed pre-print was published on the elife website on 22 July 2024: https://elifesciences.org/reviewed-preprints/98520. The data stored here are for the updated version of record.

The published text contains methods justifications and supporting citations.

This dataset was revised based on the recommendations of three reviewers. It now contains:



two text files, to be run in the R programming environment (version of record is 4.4.1), containing code to replicate the GLMM analyses and produce the based figure files displayed in the paper.

Two .csv files for running the GLMM statistics included in the revised text.

One .csv file for figure 1, which contains sand geometric and compositional data.

One .csv file containing intake rate data

Six .csv files used to create figures 2 and S2 in the text.

One Mathematica notebook file for producing the optimal cleaning model of figure 3. 


A general note: when running the scripts, the file path you utilize will differ from the ones utilized in the current text, as it depends on where on one's computer the actual .csv files are stored. The "read.csv" command in the R code will need to be customized to a particular file path.
DOI: 10.5883/bold:aau8577
title: Overview of Barcode Index Number - BOLD:AAU8577

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8578
title: Overview of Barcode Index Number - BOLD:AAU8578

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8580
title: Overview of Barcode Index Number - BOLD:AAU8580

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8582
title: Overview of Barcode Index Number - BOLD:AAU8582

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8583
title: Overview of Barcode Index Number - BOLD:AAU8583

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8584
title: Overview of Barcode Index Number - BOLD:AAU8584

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5281/zenodo.10513540
title: Updated Data for: Food-washing monkeys recognize the law of diminishing returns

description: This is a new version draft of the data files for "Food washing monkeys recognize the law of diminishing returns" by Rosien et al. 

The original reviewed pre-print was published on the elife website on 22 July 2024: https://elifesciences.org/reviewed-preprints/98520. The data stored here are for the updated version of record.

The published text contains methods justifications and supporting citations.

This dataset was revised based on the recommendations of three reviewers. It now contains:



two text files, to be run in the R programming environment (version of record is 4.4.1), containing code to replicate the GLMM analyses and produce the based figure files displayed in the paper.

Two .csv files for running the GLMM statistics included in the revised text.

One .csv file for figure 1, which contains sand geometric and compositional data.

One .csv file containing intake rate data

Six .csv files used to create figures 2 and S2 in the text.

One Mathematica notebook file for producing the optimal cleaning model of figure 3. 


A general note: when running the scripts, the file path you utilize will differ from the ones utilized in the current text, as it depends on where on one's computer the actual .csv files are stored. The "read.csv" command in the R code will need to be customized to a particular file path.
DOI: 10.5281/zenodo.14002737
title: Updated Data for: Food-washing monkeys recognize the law of diminishing returns

description: This is a new version draft of the data files for "Food washing monkeys recognize the law of diminishing returns" by Rosien et al. 

The original reviewed pre-print was published on the elife website on 22 July 2024: https://elifesciences.org/reviewed-preprints/98520. The data stored here are for the updated version of record.

The published text contains methods justifications and supporting citations.

This dataset was revised based on the recommendations of three reviewers. It now contains:



two text files, to be run in the R programming environment (version of record is 4.4.1), containing code to replicate the GLMM analyses and produce the based figure files displayed in the paper.

Two .csv files for running the GLMM statistics included in the revised text.

One .csv file for figure 1, which contains sand geometric and compositional data.

One .csv file containing intake rate data

Six .csv files used to create figures 2 and S2 in the text.

One Mathematica notebook file for producing the optimal cleaning model of figure 3. 


A general note: when running the scripts, the file path you utilize will differ from the ones utilized in the current text, as it depends on where on one's computer the actual .csv files are stored. The "read.csv" command in the R code will need to be customized to a particular file path.
DOI: 10.5883/bold:aau8585
title: Overview of Barcode Index Number - BOLD:AAU8585

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8588
title: Overview of Barcode Index Number - BOLD:AAU8588

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8589
title: Overview of Barcode Index Number - BOLD:AAU8589

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8592
title: Overview of Barcode Index Number - BOLD:AAU8592

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8595
title: Overview of Barcode Index Number - BOLD:AAU8595

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8596
title: Overview of Barcode Index Number - BOLD:AAU8596

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8597
title: Overview of Barcode Index Number - BOLD:AAU8597

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8599
title: Overview of Barcode Index Number - BOLD:AAU8599

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8600
title: Overview of Barcode Index Number - BOLD:AAU8600

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8603
title: Overview of Barcode Index Number - BOLD:AAU8603

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8604
title: Overview of Barcode Index Number - BOLD:AAU8604

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8605
title: Overview of Barcode Index Number - BOLD:AAU8605

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8608
title: Overview of Barcode Index Number - BOLD:AAU8608

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8611
title: Overview of Barcode Index Number - BOLD:AAU8611

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8612
title: Overview of Barcode Index Number - BOLD:AAU8612

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.15468/dl.g8prkj
title: Occurrence Download

description: A dataset containing 596 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 596 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008766-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13992985
title: Electrochemical activity of several compositions in the system Ag-Pd-Pt-Ru for the oxygen reduction reaction in 0.05 M KOH solution pH 12.5

description: The dataset comprises electrochemical screening data of several compositions from three different thin film materials libraries in the system Ag-Pd-Pt-Ru. Given are three csv files that contain the measurement coordinates, the chemical composition in atomic percent and the electrochemical current that was evaluated from linear sweep voltammograms at a potential of 0.85V vs. RHE. 

Experimental description

Materials libraries were fabricated by co-sputtering thin films on 100 mm diameter sapphire wafers (c-plane) from 4 elemental tar-gets. The targets were confocally aligned to a 100 mm substrate (target-substrate distance approx. 12 cm). Target materials had a purity of 99.99,%. Ar (99.9999 %) was used as a sputter gas. The deposition pressure was 0.667 Pa. The film thickness was 100 - 150 nm. The chemical composition of the materials libraries was measured by energy dispersive X-ray spectroscopy (EDX) with an acceleration voltage of 20 kV. 81 measurements were done on a regular grid of 9x9 (8.5 mm spacing) on each library. Linear regression was used to interpolate the composition over the 342 measurement areas of a 4.5 mm grid that was used in the scanning droplet cell experiments. Electrochemical measurements were conducted with the use of a high-throughput scanning droplet cell (SDC). The SDC head incorporates counter (Pt wire) and reference (Ag|AgCl|3 M KCl) electrodes and a teflon tip with 1 mm diameter. The materials library is connected as working electrode, e.g. the surface of the investigated sample in every spot where the tip touches the sample. The electrolyte was replaced for every measurement area. Linear sweep voltammograms were measured in 0.05 M KOH, pH 12.5, with a scan rate of 10 mV/s. All potentials are reported versus the RHE according to the following equation: URHE (V) = U(Ag|AgCl|3 M KCl) + 0.210 + (0.059 * pH), where U(Ag|AgCl|3 M KCl) is the potential measured versus Ag|AgCl|3 M KCl reference electrode, 0.210 V is the standard potential of the Ag|AgCl|3 M KCl reference electrode at 25◦C. Note that 0.059 is the result of (RT )· (nF)−1, where R is the gas constant, T is the temperature (298 K), F is the Faraday constant, and n is the number of electrons transferred during the reaction.
DOI: 10.5281/zenodo.13992986
title: Electrochemical activity of several compositions in the system Ag-Pd-Pt-Ru for the oxygen reduction reaction in 0.05 M KOH solution pH 12.5

description: The dataset comprises electrochemical screening data of several compositions from three different thin film materials libraries in the system Ag-Pd-Pt-Ru. Given are three csv files that contain the measurement coordinates, the chemical composition in atomic percent and the electrochemical current that was evaluated from linear sweep voltammograms at a potential of 0.85V vs. RHE. 

Experimental description

Materials libraries were fabricated by co-sputtering thin films on 100 mm diameter sapphire wafers (c-plane) from 4 elemental tar-gets. The targets were confocally aligned to a 100 mm substrate (target-substrate distance approx. 12 cm). Target materials had a purity of 99.99,%. Ar (99.9999 %) was used as a sputter gas. The deposition pressure was 0.667 Pa. The film thickness was 100 - 150 nm. The chemical composition of the materials libraries was measured by energy dispersive X-ray spectroscopy (EDX) with an acceleration voltage of 20 kV. 81 measurements were done on a regular grid of 9x9 (8.5 mm spacing) on each library. Linear regression was used to interpolate the composition over the 342 measurement areas of a 4.5 mm grid that was used in the scanning droplet cell experiments. Electrochemical measurements were conducted with the use of a high-throughput scanning droplet cell (SDC). The SDC head incorporates counter (Pt wire) and reference (Ag|AgCl|3 M KCl) electrodes and a teflon tip with 1 mm diameter. The materials library is connected as working electrode, e.g. the surface of the investigated sample in every spot where the tip touches the sample. The electrolyte was replaced for every measurement area. Linear sweep voltammograms were measured in 0.05 M KOH, pH 12.5, with a scan rate of 10 mV/s. All potentials are reported versus the RHE according to the following equation: URHE (V) = U(Ag|AgCl|3 M KCl) + 0.210 + (0.059 * pH), where U(Ag|AgCl|3 M KCl) is the potential measured versus Ag|AgCl|3 M KCl reference electrode, 0.210 V is the standard potential of the Ag|AgCl|3 M KCl reference electrode at 25◦C. Note that 0.059 is the result of (RT )· (nF)−1, where R is the gas constant, T is the temperature (298 K), F is the Faraday constant, and n is the number of electrons transferred during the reaction.
DOI: 10.5883/bold:aau8613
title: Overview of Barcode Index Number - BOLD:AAU8613

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8617
title: Overview of Barcode Index Number - BOLD:AAU8617

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5281/zenodo.14002731
title: DEMAX CoA_2022_128669_Gröbner

description: CoA for 1-palmitoyl-d31-2-oleoyl-d32-sn-glycerophosphocholine
DOI: 10.5281/zenodo.14002732
title: DEMAX CoA_2022_128669_Gröbner

description: CoA for 1-palmitoyl-d31-2-oleoyl-d32-sn-glycerophosphocholine
DOI: 10.5883/bold:aau8618
title: Overview of Barcode Index Number - BOLD:AAU8618

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8619
title: Overview of Barcode Index Number - BOLD:AAU8619

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8620
title: Overview of Barcode Index Number - BOLD:AAU8620

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8621
title: Overview of Barcode Index Number - BOLD:AAU8621

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5281/zenodo.14002753
title: Dataset for the study: "Engineering the Surface of Carbon Dots for Enhanced Photoluminescence and Controlled Plasmonic Interactions"
DOI: 10.5281/zenodo.14002754
title: Dataset for the study: "Engineering the Surface of Carbon Dots for Enhanced Photoluminescence and Controlled Plasmonic Interactions"
DOI: 10.5883/bold:aau8622
title: Overview of Barcode Index Number - BOLD:AAU8622

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8623
title: Overview of Barcode Index Number - BOLD:AAU8623

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8625
title: Overview of Barcode Index Number - BOLD:AAU8625

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8627
title: Overview of Barcode Index Number - BOLD:AAU8627

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8628
title: Overview of Barcode Index Number - BOLD:AAU8628

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8630
title: Overview of Barcode Index Number - BOLD:AAU8630

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8632
title: Barcode Index Number BOLD:AAU8632

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.26937931.v1
title: Supporting Data- Methods for detecting and monitoring Salmonella infection and chronic carriage in living mice using bioluminescent in vivo imaging

description: <em>Salmonella enterica serovar </em>Typhi primarily persists in chronic carriers by forming biofilms on gallstones in the gallbladder. We have developed a gallstone mouse model to study chronic carriage. To better understand the infection timeline and differentiate between mice that have maintained long-term gallbladder carriage from those that have cleared infection, we utilized bioluminescent <em>S. </em>Typhimurium and <em>in vivo </em>imaging to detect and track the organ-specific presence of bacteria in living mice. All mice used in this study were housed and maintained in the animal facilities at the Abigail Wexner Research Institute at Nationwide Children’s Hospital under an approved Institutional Animal Care and Use Committee (IACUC) protocol. 
<em>S. </em>Typhimurium 14028 (WT) was transduced with the <em>lux</em> operon from the <em>S. </em>Typhimurium Xen33 strain from Perkin Elmer©, creating 14028lux. 129X1/SvJ mice were fed a lithogenic diet for 6 weeks to induce gallstone formation. After cessation of diet, these mice were infected with 5x103-1x104 colony forming units (CFU) of either the 14028lux isolate, WT (non-luminescent) isolate, or an equal volume of sterile phosphate buffered saline (PBS) via an intraperitoneal injection. Mice were serially imaged (IVIS SpectrumCT) every 2-3 days for up to 63 days. Images were quantified by measuring average radiance over selected regions of interest. The presence of bioluminescent bacteria in the gallbladder, liver, spleen, and cecum were confirmed by imaging the abdominal cavity and individual organs. Organs were homogenized and CFUs per mg of tissue were quantified and compared between each group.
DOI: 10.5883/bold:aau8633
title: Overview of Barcode Index Number - BOLD:AAU8633

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8636
title: Overview of Barcode Index Number - BOLD:AAU8636

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8639
title: Overview of Barcode Index Number - BOLD:AAU8639

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8640
title: Overview of Barcode Index Number - BOLD:AAU8640

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8645
title: Overview of Barcode Index Number - BOLD:AAU8645

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8651
title: Overview of Barcode Index Number - BOLD:AAU8651

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8652
title: Overview of Barcode Index Number - BOLD:AAU8652

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8654
title: Overview of Barcode Index Number - BOLD:AAU8654

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.