cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vbtv66cmjx
title: Data for: Shifts in plant ecological strategies in remnant forest patches along urbanization gradients

description: This data set contains all data used for analyzing the ecological strategies based on functional traits of plant species in remnant forests in Guiyang. It has two parts: (1) Recorded species information; (2) Functional traits of recorded species.
DOI: 10.17632/v7ngjwwwxm
title: Origami-like quasi-mechanisms with an antiprismatic skeleton

description: Animations of origami-like quasi-mechanisms with an antiprismatic skeleton (based on a regular n-gon) of sandglass type (for n=3,4,5,6), which are either shaky or have an extremal snap, i.e. one realization is on the boundary of self-intersection.  In the latter case also the shaky configuration is displayed (center), which has to be passed during the snap between the two realizations (left, right) of the polyhedron.
DOI: 10.17632/x8xkt34jrh
title: Low Resolution Thermal Imaging Dataset

description: The dataset consists of 3200 images corresponding to ten sign digits, 0 to 9. Thus, each sign language digit consists of 320 images collected from different persons. The hand is oriented in different ways for capturing all variations in the dataset.
DOI: 10.17632/dhdkxh79z5
title: LINF_350018000

description: histone H4
Leishmania infantum (strain JPCM5)
DOI: 10.17632/4w5z7crgsv
title: Overview of RNAseq data of the lungs of SARS-CoV-2 infected hamsters treated with the CYP19A1 inhibitor letrozole

description: Transcriptomic data obtained from lungs of SARS-CoV-2 infected hamsters treated with the CYP19A1 inhibitor letrozole.
DOI: 10.17632/9bpbhs5dsg
title: Sticta_Caribbean_alignments_MPE-D-22-00191

description: DNA alignment datasets used for biogeographic and macroecological analyses presented in Mercado-Díaz et al. 2023 (MPE).
DOI: 10.17632/c9vm3bhr94
title: RRVRP Instance

description: We adopt the trip decomposition method to transfer the trip to arc demand so as to propose a vehicle flow formulation for the RRVRP. In the computational experiments, we use 40 randomly-generated small-scale instances and the 20 benchmark instances provided by Bodin et al. (2000). To randomly generate the 40 small-scale instances, we abstract the transportation network on a 60×60 grid where the nodes denote the depot (on node (30, 30)), the disposal facility (on node (20, 40)) and customers. The small-scale instances are classified into four classes with 10 test problems (with 5, 10, 15 and 20 trips) in each class. The four classes differed in the mix of Trip type 1, 2, 3 and 4.
DOI: 10.17632/thyskcm8g9
title: Data for: Assessment of Motivational Interviewing; Psychometric characteristics of the MITS 2.1 in general practice

description: Analyses for ‘Assessment of Motivational Interviewing; Psychometric characteristics of the MITS 2.1 in general practice’
DOI: 10.17632/xcvph2sryg
title: Distinct nuclear architecture of neural stem cells and other neural cell types in adult hippocampal neurogenesis 

description: Data are several variables descripting morphological features of nuclei. These nuclei are of the following cell types:
- types 1 through 4 of murine adult hippocampal neurogenesis;
- types 1 of murine adult hippocampal neurogenesis, with 4 activity stages, i.e. marked with GFAP, GFAP/nestin, nestin, and nestin/Ki67.
- types 1 of murine adult hippocampal neurogenesis, anatomical variants alpha and beta.
- cerebellum cells (CER, control), along with pilocytic astrocytoma (PA) and medulloblastoma (MB) cells.
Each file contains all analyzed data (“data_ALL”), data without outliers (“data2_noOutliers”, not determined for “CancerCells”) and statistical “summary”.
Full description will be available in the publication with a reference to this data set.
DOI: 10.15468/dl.9wsktz
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is TUR Fungus collections of the Turku University",
 "Country is Croatia"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000414-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/dkvr4jvdbb
title: Our Place in the Universe

description: This project examined the relations between: (1) Three classroom-related mathematics emotions (enjoyment, boredom, and pride), (2) control-value appraisals, (3) academic buoyancy, and (4) classroom engagement, in the context of a thematic curriculum that combined geography, history, English literature, and science, together in a single lesson, by linking the discrete subjects to the local social, historical, and geopolitical context.

Data were collected over a wave in the Autumn term, of 2021. Self-reported emotions, control-value appraisals, academic buoyancy, and engagement, were collectected in students regular lessons from a single secondary school. The  sample comprised 170 Year 7 students (71 males, 91females; Mean age of 11.2years). 

All items were made specific to 'Our Place in the Universe'

Academic Buoyancy was measured using the Academic Bouyancy Scale.
Source: Martin, A.J. & Marsh, H.W. (2008) Academic buoyancy: towards an understanding of students’ everyday academic resilience, Journal of School Psychology, 46, 53–83. doi:10.1016/j.jsp.2007.01.002
Items are labelled BO1 to BO4 in the attached dataset.

Behavioural Engagement was measured using the Behavioural Engagement subscale from the Engagement and Dissatisfaction with Learning Questionnare.
Source: Source: Skinner, E. A., Kindermann, T. A., & Furrer, C. J. (2009). A motivational perspective on engagement and disaffection: Conceptualization and assessment of children’s behavioral and emotional participation in academic activities in the classroom. Educational and Psychological Measurement, 69(3), 493–525. doi.10.1177/001316440832323
Items are labelled at G1 to G5 in the attached dataset.

Control-value appraisals were measured using the Expectancy-Value-Cost scale.
Source: Kosovich, J. J., Hulleman C. S., E. Barron, K. E., & Getty, S. (2015). A practical measure of student motivation: Establishing validity evidence for the Expectancy-Value-Cost Scale in Middle School. Journal of Early Adolescence, 35(5-6), 709-816. doi.org/10.1177/027243161455689
Expectancy (control) items are labelled EX1 to EX3, (positive) value as V1 to V3, and cost (negative value) as C1 to C4, in the attached dataset.

Enjoyment, boredom, and pride, were measured using the respective subscales from the Achievement Emotions Questionnaire: Validation for pre-adolescent students.
Source: Peixoto, F., Mata, L., Monteiro, V., Sanches, C., & Pekrun, R. (2015). The Achievement Emotions Questionnaire: Validation for pre-adolescent students. European Journal of Developmental Psychology, 12, 472-481. doi.org/10.1080/17405629.2015.1040757
Enjoyment items are labelled E1 to E4, boredom B1 to B4, and pride P1 to P4, in the atttached dataset.
DOI: 10.17632/h9gm92pjbc
title: BPE formatted payload

description: The dataset is encoded in the BPE format of the Sentence Piece package (Kudo and Richardson, 2018) . Training and testing datasets are encoded in the same way. Dataset consists of csv format and columns are as follows:
1	label_name : Threat Group Name (Just reference only)
2	label_code : Use as actual correct answer data as threat group code (Y data)
3	raw_packet : Encoded attack payload training data (X data)
DOI: 10.17632/cbjp83r99w
title: LINF_300022800

description: DnaJ domain-containing protein | JDP24 | J24
Leishmania infantum (strain JPCM5)
DOI: 10.17632/9bcxx5h5s4
title: Data on Fish Farmers’ Intention to Use Black Soldier Fly Larvae Meal in Nile Tilapia Production in Kenya

description: This is a primary data colected using cross-sectional survey design t from 211 randomly selected cage operators (98) and pond farmers (113) in Kenya's Siaya, Kisumu, and Homabay Countiesz. The data was collected between December 2020 and April 2021. The data captures variables relating to the relationship between TAM constructs, namely Perceived Ease of Use (PEOU), Perceived Usefulness (PU), Attitude towards Use (ATT), and Behavioral Intention (BI) to use BSFL
DOI: 10.17632/bddbn26mgs
title: Datos de carbono (Bosque Secundario)

description: Los siguientes datos corresponden a los primeros 5 datos de un Inventario de carbono realizado en el bosque secundario de la empresa FRUCTA Costa Rica S.A. como parte de la tesis de Javier Hernández-Cole.
DOI: 10.17632/j5zybgxk9t
title: (Final supplement) Expanding literature regarding cutaneous manifestations of COVID-19: A bibliometric analysis

description: Supplementary Table 1
DOI: 10.17632/fmcf3wgc7y
title: Data for: Discrimination of ordinal relationships in temporal sequences by 4-month-old infants

description: Data from both habituation and test trials by subject (age and sex)
DOI: 10.17632/msm34n43j4
title: A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : MapToCleave unprocessed miRNA precursors

description: MapToCleave_unprocessed_miRNA_precursor_IDs.txt, Related to Figure 2B.
The file contains the identity information of MapToCleave unprocessed miRNA precursors tested in human HEK-293T cells. The human (hsa), mouse (mmu), drosophila (dme) and nematode (cel) miRNA precursors are bona fide miRNA curated in MirGeneDB, while planarian (sme) and sea anemone (nve) miRNA precursors are curated in miRBase. It should be noted that 16 unprocessed miRNA precursors annotated as mirtron were removed from the list. They will not affect the analysis. The removed mirtron miRNA precursors are: cel-mir-62:MI0000033:in:mirtron,dme-mir-1003:MI0005864:in:mirtron,dme-mir-1004:MI0005865:in:mirtron,dme-mir-1005:MI0005866:in:mirtron,dme-mir-1006:MI0005867:in:mirtron,dme-mir-1007:MI0005868:in:mirtron,dme-mir-1008:MI0005869:in:mirtron,dme-mir-1009:MI0005870:in:mirtron,dme-mir-1010:MI0005871:in:mirtron,dme-mir-1012:MI0005873:in:mirtron,dme-mir-1013:MI0005874:in:mirtron,dme-mir-1014:MI0005875:in:mirtron,hsa-mir-3940:MI0016597:in:3p-tailed,hsa-mir-5010:MI0017878:in:5p-tailed,mmu-mir-1981:MI0009992:in:mirtron and mmu-mir-3097:MI0014090:in:5p-tailed.
DOI: 10.17632/398z7y99cg
title: Antigenic effects of influenza A(H3N2) virus egg-adaptation substitutions are influenced by evolution associated substitutions-Hadiprodjo

description: 1. Excel spreadsheet showing calculated areas under the curve (AUC) for virus quantitation in day 1 to 10 nasal washes from inoculated ferrets. Data is shown for 16 ferrets, 4 each per four reverse genetics engineered viruses (inoculum). Data is shown for AUC for RT-PCR quantitation of viral RNA expressed as log 10 RNA copies/µL (AUC_PCR) and for TCID50 quantitation of infectious virus expressed as log 10 copies/100 µL(AUC_TCID). Area under the curve for each ferret and each assay were determined using DescTools package in R. 
2. Excel spreasheet showing virus quantitation in each ferret nasal wash sample collected from day 1 to 10 from 16 ferrets -= 160 samples. Data is shown for RT-PCR quantitation of viral RNA (logCopies) and for TCID50 quantitation of infectious virus (logTCID50)
3. Serological analysis of ferret antisera collected 14 days after inoculation with reverse genetics engineered viruses (inoculum). ferrets were inoculated per virus x 4 viruses - 16 ferrets. Spreadsheet variables descriptions are provided in a data dictionary on a separated sheet.
DOI: 10.17632/v7gzdt6cxz
title: LINF_210026200

description: Protein kinase | PK4; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gw5jsftbsy
title: LINF_310009200

description: calpain-like cysteine peptidase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/7z4dhfz7b8
title: LINF_110007400

description: serine/threonine protein kinase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/f7hnnyrssm
title: Exact Shapley Values for Local and ModelTrue Explanations of Decision Tree Ensembles - Supplementary Data

description: Data accompanying the software release (https://github.com/Biodesix/EjectShapley) for: Exact Shapley Values for Local and ModelTrue Explanations of Decision Tree Ensembles
DOI: 10.17632/n9hmmfpbr3
title: The impact of neighborhood safety on the anxiety levels of prehospital emergency care professionals - a research article

description: Demographic info and staı scores were given in spss and excel
DOI: 10.17632/k8vw4j6y75
title: Electrical impulse characterization along actin filaments in pathological conditions

description: We present an interactive Mathematica notebook that characterizes the electrical impulses along actin filaments in both muscle and non-muscle cells for a wide range of physiological and pathological conditions. The simplicity of the theoretical formulation, and high performance of the Mathematica software, enable the analysis of multiple conditions without computational restrictions. The program is based on a multi-scale (atomic → monomer → filament) approach capable of accounting for the atomistic details of a protein molecular structure, its biological environment, and their impact on the travel distance, velocity, and attenuation of monovalent ionic wave packets propagating along microfilaments. The interactive component allows investigators to choose the experimental conditions (intracellular Vs in vitro), nucleotide state (ATP Vs ADP), actin isoform (alpha, gamma, beta, and muscle or non-muscle cell), as well as a conformation model that covers a variety of mutants and wild-type (the control) actin filaments. We used the computational tool to analyze environmental changes such as temperature effects and pH changes of the surrounding solutions, as well as structural changes to an actin monomer due to radius changes. Additionally, we investigated for the first time the electrostatic consequences of actin mutations from different disease conditions. These studies may provide an unprecedented molecular understanding of why and how age, inheritance, and disease conditions induce dysfunctions in the biophysical mechanisms underlying the propagation of electrical signals along actin filaments.
DOI: 10.17632/wh2pchcp5h
title: Fault geometry and Holocene deformation of the Littoral fault zone in seismic gap south of the China's Greater Bay

description: This supporting information provides the caption of supplementary Figures.
DOI: 10.17632/5gybhdyvhk
title: Research IMTLP under uncertainty

description: This dataset has been used for a research project titled, "A Two-stage Stochastic Model for Intermodal Terminal Location and Freight Distribution under Facility Disruptions", by authors Vishal Badyal, Dr. William Ferrell, Dr. Nathan Huynh, and Bhavya Padmanabhan.
DOI: 10.17632/832pbjkzc9
title: Data for:  Enhancing Understanding of Niche Indicators and CSR Strategies of Woody Plants in Remnant Forests: Exploring the Impact of Surrounding Spatiotemporal Urban Expansion

description: This data set contains all data used for analyzing the influences of temporal and spatial characteristics of urbanization on niche indicators and CSR strategies of woody plants in urban remnant forests in Guiyang, China. It includes urban expansion indicators surrounding remnant patches, niche indicators for woody plants and CSR strategies for woody plants.
DOI: 10.17632/xccczv7mff
title: Data for: The unsolved role of heightened connectivity from the unaffected hemisphere to paretic arm muscles in chronic stroke.

description: SPSS data
DOI: 10.17632/y4bj5f6ky4
title: LINF_350042100

description: NADH-ubiquinone oxidoreductase complex I subunit | NDUFB7 ortholog; Leishmania infantum (strain JPCM5)
DOI: 10.17632/z9c6v8p4g9
title: A Wnt-induced lncRNA-DGCR5 splicing switch drives tumor-promoting inflammation in esophageal squamous cell carcinoma. Yue Li et al.

description: Uncropped gel images in the Figures of this study
DOI: 10.17632/g6gyc54dmr
title: Polling Place Closures

description: The hypotheses are (1) that polling place closures have a negative effect on voter turnout; (2) that counties with a larger minority population experience more polling place closures than counties with a smaller minority population, (2a) especially in states with unified Republican state government; and (3) that the negative effect of polling place closures on voter turnout is larger in counties with a larger minority population. Data on three presidential elections (2008, 2012, and 2016) were gathered from the Election Administration and Voting Survey as well as the Bureau of the Census. It finds no support for H1, showing that polling place closures do not have a significant effect on voter turnout. While polling place closures lead to less physical turnout, they are associated with increases in absentee turnout. It finds mixed results for H2, H2a, and H3.
DOI: 10.17632/cjvwj83sbx
title: Data of VITRS

description: Participants were recruited from high schools and universities in Hanoi. The scale was administered to the Vietnamese population. We collected data over two months, from October 2022 to November 2022.
DOI: 10.17632/khvn8nw2np
title: Supplementary Data for Reliability-Based Calibration of the Partial Safety Factor for Shear Design of Fibre Reinforced Concrete Members without Shear Reinforcement According to the fib Model Code 2010

description: Supplementary Data used for calibrating the partial safety factor for shear design of FRC members without shear reinforcement according to the fib Model Code 2010. Contains the model error calculation based on a database of experimental results. To be expanded in the future with further calculations.
DOI: 10.17632/dv497s8d6k
title: WDI extracted Energy-Welfare Nexus Dataset

description: Using World Development Indicators (WDI) database, this dataset provides the most comprehensive panel dataset over the 1960-2014 period for revisiting two seminal articles on the energy-welfare nexus, namely Kraft and Kraft (1978) and Ferguson et al. (2000), touching on the notions of causation and correlation, respectively. The nature of the raw data of this dataset, alongside STATA codes and related excel files, are presented in two co-published articles in Data in Brief and Energy Strategy Reviews. It helps interested scholars who wish to replicate this research or even re-produce an updated dataset for testing emerging economic theories on the energy-welfare nexus.  

We have used this dataset and STATA codes to conduct a comprehensive note on the causation and correlation between energy use (as measured by Primary Energy Use (E), Electricity (e) and the ratio e/E) and affluence (A).  Our analysis suggests that causation and correlation indicators are time-dependent, country-specific, and may vary circularly. Thus, it is not unusual that the directions of the Granger causalities in the energy-welfare nexus vary, depending on each country's technological, institutional, or cultural advancement (i.e., development stages).
DOI: 10.5281/zenodo.14906938
title: AMPERE Summary Plot Movies (2020-Jan)

description: 2020-Jan AMPERE summary plot movies. See included zenodo_summary_plot_movie_description document for details.
DOI: 10.5281/zenodo.14906939
title: AMPERE Summary Plot Movies (2020-Jan)

description: 2020-Jan AMPERE summary plot movies. See included zenodo_summary_plot_movie_description document for details.
DOI: 10.17632/cz3thnr9kf
title: 4C data set 

description: We have identified putative repressor region (PRR) to exon-1 of β-globin (βE1) in the β-globin cluster as a core region in all the HPFH deletions that activate fetal hemoglobin and silences adult hemoglobin. To test the impact of PRR-βE1 gene editing in β-globin cluster configuration, we employed  Circular chromosome conformation capture (4C) analysis to assess the LCR interaction to the -globin promoter. Using HBG2 promoter as viewpoint,4C analysis showed an increased interaction of HBG promoter to the hypersensitive (HS) sites of the LCR in HUDEP-2 clones harbouring PRR-βE1 biallelic deletions compared to control HUDEP-2 cells.
DOI: 10.17632/b9f3bcfwp6
title: LINF_310031000

description: ADP-ribosylation factor | ARF1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/k9p4ryyjdp
title: Supplementary Datasets - Systematic Functional Analysis of SARS-CoV-2 Proteins Uncovers Viral Innate Immune Antagonists and Remaining Vulnerabilities

description: Supplementary datasets for Hayn, Hirschenberger, Koepke et al
DOI: 10.17632/68h9nvnhbx
title: Bioorthogonal Photocatalytic Profiling of Mitochondrial Proteomes from Primary Living Samples. CAT-S Proteomic Dataset.

description: In situ profiling of subcellular proteomic networks in primary and living systems, such as primary cells from native tissues or clinic samples, is crucial for the understanding of life processes and diseases, yet challenging for the current proximity labeling methods (e.g., BioID, APEX) due to their necessity of genetic engineering. Here we report CAT-S, an up-to-date bioorthogonal photocatalytic chemistry-enabled proximity labeling method, that expands proximity labeling to a wide range of primary living samples for in situ profiling of subcellular proteomes. Powered by the newly introduced thioQM labeling warhead and targeted bioorthogonal photocatalytic decaging chemistry, CAT-S enables labeling of mitochondrial proteins in living cells with high efficiency and specificity (up to 87%). We applied CAT-S to distinct cell cultures, mouse tissues as well as primary T cells from human blood, portraying the native-state mitochondrial proteomic characteristics, and unveiled a set of hidden mitochondrial proteins in human proteome. Furthermore, CAT-S allowed quantitative analysis of the in situ proteomic perturbations on dysfunctional tissue samples, exampled by diabetic mouse kidneys, and revealed the alterations of lipid metabolism machinery that drive the disease progression. Given the advantages of non-genetic operation, generality, efficiency as well as spatiotemporal resolution, CAT-S may open new avenues as a proximity labeling strategy for in situ investigation of subcellular proteomic landscape of primary living samples that are otherwise inaccessible.
DOI: 10.17632/66525prn5p
title: Supplement to Cutaneous Toxicities of Immune Checkpoint Inhibitors in Patients with Altered Immunity

description: This supplemental material to our manuscript "Cutaneous Toxicities of Immune Checkpoint Inhibitors in Patients with Altered Immunity" describes in further detail the process by which data was obtained and patients screened for inclusion, in addition to how reactions were graded by severity. Patients with solid organ transplants and HIV were included in our study, which catalogs the rate and characteristics of cutaneous adverse reactions seen in these patients.