cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5067/do715t7t5pg8
title: MERRA-2 tavgU_3d_udt_Np: 3d,Diurnal,Time-Averaged,Pressure-Level,Assimilation,Wind Tendencies V5.12.4
DOI: 10.5281/zenodo.1033414
title: Mt1082 Egl-1(N487)V | 2011-08-02T10:38:57+01:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=zObl78SfAGk
<b>strain</b> : MT1082
<b>timestamp</b> : 2011-08-02T10:38:57+01:00
<b>gene</b> : egl-1
<b>chromosome</b> : V
<b>allele</b> : n487
<b>strain_description</b> : egl-1(n487)V
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : egl-1 (n487) on food R_2011_08_02__10_38_57___2___1
<b>total time (s)</b> : 21591.2
<b>frames per second</b> : 5.00751
<b>video micrometers per pixel</b> : 4.52306
<b>number of segmented skeletons</b> : 106356
DOI: 10.5281/zenodo.12684118
title: Systematic creation and phenotyping of Mendelian disease models in C. elegans: towards large-scale drug repurposing

description: Data collected for the eLife OpenAccess paper: Systematic creation and phenotyping of Mendelian disease models in C. elegans: towards large-scale drug repurposing. (doi: 10.7554/eLife.92491.1)

Contains: extracted features, calculated stats, normalised z-scores and timerseries data of all the disease model mutants generated. In addition, there is a static .html file that allows for mousing over the clustermaps to easily view differences in strains compared to the N2 wild-type. Dataset also contains, metadata and feature summary/file name information of FDA-library drug screen and the confirmation screen of the hit from this (i.e., all data collected in published in the associated paper).
DOI: 10.5281/zenodo.14497075
title: Data for 'An Assessment of Professional Burnout within Hospital Pharmacists: A Case Study of Abu Dhabi'

description: This dataset contains the raw, de-identified data collected for the study titled 'An Assessment of Professional Burnout within Hospital Pharmacists: A Case Study of Abu Dhabi.' The data were collected using the Maslach Burnout Inventory - Human Services Survey for Medical Professionals. It includes responses on emotional exhaustion, depersonalization, and personal achievement, along with demographic information such as years of practice and qualifications. The dataset supports the findings presented in the manuscript and adheres to Safe Harbor de-identification guidelines to ensure participant confidentiality.
DOI: 10.6084/m9.figshare.27901206
title: A large annotated cervical cytology images dataset for AI models to aid cervical cancer screening

description: This dataset represents a collection of cytology images with exhaustive annotations of abnormal cervical cells, containing 8,037 non-overlapping images of 2048x2048 pixels each. The dataset was derived from 129 scanned Thinprep cytologic test (TCT) slide images reported as abnormal levels at Heilongjiang Maternal and Child Health Hospital. Three professional pathologists then conducted a detailed annotation and review process on these cytology images to generate usable annotation files. Finally, the complete dataset consists all cytology images in .png file format and annotation files of abnormal cells for each cytology image in .xml file format.
DOI: 10.6084/m9.figshare.27989570
title: Reconstruction of long-term hourly sea level data for Prince Edward Island, Canada

description: This is the reconstructed sea level variation for the nearshore areas around Prince Edward Island (PEI), Canada. The Fisheries and Oceans Canada (DFO) only has one permanent tide observation station running in PEI, which is the Charlottetown Tide Station (ID:1700). This reconstruction is to break through the limitation of the lack of long-term high-temporal-resolution regional sea level record around PEI, which applies to 7 more different locations with historic short-term records of temporary tide stations across PEI.
DOI: 10.6084/m9.figshare.27998210
title: <b>Initial Closure of the Longmu Co-Shuanghu </b><b>Paleo-Tethyan </b><b>Ocean: Constraints based on New Paleomagnetic Data from the Middle Triassic Volcanic-Sedimentary Sequence, </b><b>Southern Qiangtang Terrane</b>

description: Supporting information for Table S1-S3
DOI: 10.6084/m9.figshare.28012691
title: Molofsky_etal_2024_TABLES_Geologic-Seeps_Comm-Earth-Env.pdf

description: We use molecular and isotopic data from global seep and reservoir inventories, and new seep analyses from major hydrocarbon-bearing basins in California, to identify post-genetic changes in gas chemistry that are typical of seepage. These changes do not occur in deep reservoir gas that may leak during extraction and transport.
DOI: 10.3886/icpsr09215.v2
title: New York Times Stock Market Crash Survey, October-November 1987
title: Version 2

description: This survey measures the public's attitudes towards political issues and the stock market crash of October 1987. Questions asked of respondents include whether the recent stock market crash would lead to a recession, how they would assess the condition of the national economy, whether the respondent would vote for the Democratic or the Republican candidate in the 1988 presidential election, and whether the respondent owned stock or shares in a mutual fund that invested in the stock market. Background information on individuals includes party affiliation, age, income, sex, marital status, education, and race.
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major statistical software formats as well as standard codebooks to accompany the data. In addition to these procedures, ICPSR performed the following processing steps for this data collection: Created variable labels and/or value labels..
description: Datasets: 
 
 DS1: Dataset
description: The data contain blanks. There are multiple records per case.
description: All adults in the United States, excluding Alaska and Hawaii.
description: Random sample.
DOI: 10.5066/p9f8upgf
title: Methylmercury Effects on Birds: Bibliography and Dataset for the Development of Toxicity Reference Values for Injury Assessment

description: This data release contains three files. The first (Table S1 Bibliography Dataset) contains the entire bibliography for the 435 publications examined for potential inclusion into at least one of the meta-analyses for the effects of environmental mercury (Hg) on birds. For those 168 publications that were included in at least one meta-analysis, the worksheet titled Bibliography contains data describing each sub-dataset, including the type of study, data extraction methods, biological endpoints measured, age class, tissue-residue Hg concentrations, dosing Hg concentrations, the measured effect of Hg, bird taxonomy, life history, and the study’s citation. The worksheet titled Header Explanation describes each column within the Bibliography. The worksheet titled Flowchart describes the process of how the different columns within the Bibliography worksheet can be filtered to produce the studies and sub-datasets that were included within a specific meta-analysis (e.g., combinations of endpoint categories and age classes). The second file (Table S2 Detailed Endpoints) contains the entire list of detailed biological endpoints measured by studies examining the effect of Hg on birds and how they were categorized into the six main endpoint categories (i.e., survival, offspring output, behavior, biochemical, histology, and body morphology) and the three combined endpoints categories (i.e., combined reproduction endpoints, combined survival and reproduction endpoints, and all endpoints during the breeding season). The number of publications and sub-datasets (both for all time periods and those conducted during the breeding season) that quantified each endpoint are listed. The third (Table S3 Data Tables) contains the data used in all 87 meta analyses and shows how each row of data (datapoint used in at least one meta analysis) was categorized into the six main endpoint categories and the three combined endpoint categories. Each of the seven worksheets in the Table S3 Data Tables represents a different type of Hg on the x axis (adult blood-equivalent Hg, egg-equivalent Hg, Hg injected into eggs, maternal dietary Hg for effects on eggs, maternal dietary Hg for effects on juveniles, adult dietary Hg for effects on adults, and juvenile dietary Hg for effects on juveniles).

These data support the following publication:
Ackerman, J.T., Peterson, S.H., Herzog, M.P. and Yee, J.L., 2024. Methylmercury Effects on Birds: A Review, Meta-Analysis, and Development of Toxicity Reference Values for Injury Assessment Based on Tissue Residues and Diet. Environmental Toxicology Chemistry. https://doi.org/10.1002/etc.5858.

These data are associated with a software release:
Ackerman, J.T., Herzog, M.P.,  Peterson, S.H., and Yee, J.L., 2024, The Bird Mercury Tool: Estimating methylmercury injury to birds: U.S. Geological Survey software release, https://doi.org/10.5066/P9MSD8X0.
DOI: 10.6084/m9.figshare.28151648
title: Supplementary Material for: Functional outcome prediction in Japanese patients with non-surgical intracerebral hemorrhage: The FSR ICH Score

description: Introduction: There has been limited research on predicting the functional prognosis of patients with non-surgical intracerebral hemorrhage (ICH) from the acute stage. The aim of this study is to develop a risk prediction model for the natural course in patients with non-surgical ICH and to evaluate its performance using a multicenter hospital-based prospective study of stroke patients in Japan.
Methods: We consecutively registered a total of 1,017 patients with acute ICH (mean age, 68 years) who underwent conservative treatment and followed them up for 3 months. The study outcome was a poor functional outcome (modified Rankin Scale score, 4–6) at 3 months after ICH onset. To develop the risk prediction model for natural course in patients with non-surgical ICH, we included the following clinical common factors assessed on admission in daily clinical practice for ICH: age, sex, medical history (hypertension, diabetes mellitus, dyslipidemia, pre-stroke dementia, previous stroke, coronary artery disease, smoking status, alcohol drinking status, oral anticoagulation, and antiplatelet medication), admission status (Time from onset to admission, systolic blood pressure, diastolic blood pressure, pulse pressure, plasma glucose levels, severity of the stroke), and neuroradiologic data (ICH location, intraventricular hemorrhage, and hematoma volume).The risk prediction model for poor functional outcome was developed using logistic regression analysis. In addition, the risk prediction model was translated into a point-based simple risk score (FSR ICH score) using the approach in the Framingham Heart Study.
Results: At 3 months after the ICH onset, 323 (31.8%) patients developed a poor functional outcome. Age, diabetes mellitus, pre-stroke dementia, NIHSS score on admission, intraventricular hemorrhage, and hematoma volume were included in the risk prediction model. This model demonstrated excellent discrimination (C statistic=0.884 [95% confidence interval, 0.863–0.905]; optimism-corrected C statistic based on 200 bootstrap samples=0.877) and calibration (Hosmer-Lemeshow goodness-of-fit test: P=0.72). The FSR ICH score, a point-based simple risk score, also showed excellent discrimination, with a C statistic of 0.882 (95% CI: 0.861–0.903).
Conclusions: We developed a new risk prediction model for 3-month poor functional outcome in patients with non-surgical ICH using a multicenter hospital-based prospective study in Japan. The current risk prediction model has the potential to be a useful tool for estimating the natural course in patients with non-surgical ICH, aiding in making treatment decisions, including surgical options, early formulation of rehabilitation plans, and efficient utilization of medical resources.
DOI: 10.6084/m9.figshare.28170077
title: Supplementary Material for: Development and External Validation of the Hidradenitis Suppurativa Cutaneous Abscess Prediction Score-2 (HSCAPS-2): A Clinical Decision Support Tool for Diagnosis of Hidradenitis Suppurativa over Cutaneous Abscess

description: Introduction: Patients with hidradenitis suppurativa (HS) experience a 10-year diagnosis delay, on average. Accordingly, time to diagnosis represents one of the greatest unmet needs in HS, which to date has not been adequately addressed. A general lack of awareness about HS in the medical community and a notable heterogeneity in clinical presentation, which is most often confused with cutaneous abscess (CA), forms the basis of poor disease recognition and diagnosis delay. Our objective was to develop and validate a prediction model for diagnosis of HS versus site-specific cutaneous abscess (CA).

Methods: We performed a cross-sectional study in which the model was developed using a large clinical database and externally validated using a sample of clinical records at Penn State Health. Prediction model discrimination and calibration were evaluated using the c-statistic, calibration intercept/slope, and a flexible calibration curve.

Results: Variable selection identified 15 predictors, 7 of which remained after model simplification. The following characteristics were predictive of HS relative to site-specific CA: female sex, increasing age up to 44 years, African American race, race other than White or African American, increasing body mass index, polycystic ovarian syndrome, and acne. The c-statistics of the 7-variable model in validation was 0.77 (95% CI 0.73-0.80). Calibration intercept and slope were 0.29 (95% CI 0.14, 0.43) and 1.09 (95% CI 0.90, 1.28).

Conclusion: Clinical characteristics can predict diagnosis of HS over CA in practice without reliance on a specialty-specific examination to identify disease and potentially reduce diagnosis delay.
DOI: 10.15468/ee6ps6
title: Anymals+plants - Citizen Science Data
DOI: 10.17632/2v5d3bpydb.1
title: A dataset of critical citations contexts

description: This corpus is made of 51 citation contexts with critical or negative citations according to the authors of others studies, mentionning them as examples of critical citations or equivalent. The source studies are added to each example. 
Each example is categorized according to 3 functions we propose in order to define a critical citation.
DOI: 10.17632/vt5v7c27kw.1
title: Personality traits preferences and educational choices

description: Data to replicate descriptives and analysis from the paper: Coenen, J., Borghans, L. & Diris, R. (2020). Personality traits, preferences, and educational choices: a focus on STEM
DOI: 10.17639/nott.7306
title: Gendered experiences of refugee education in Europe: a scoping review protocol

description: This scoping review aims to explore the role of gender in refugees' education access, experiences, and outcomes in Europe since 2015. Gender can act as a significant barrier to education, and gender stereotypes and bias can affect learning opportunities and outcomes. As a response, a scoping review is conducted to explore the role of gender in refugees' education access, experiences, and outcomes in Europe since 2015. This review follows a systematic process of reviewing and synthesizing texts compiled in the Hub for Education for Refugees in Europe (HERE) knowledge base to fill the gaps in knowledge about the gender-related post-migration experiences of refugees and displaced individuals who arrived in Europe. The review includes studies that focus on educational services for refugees in Europe and uses a meta-ethnographic synthesis approach for data analysis and synthesis.
DOI: 10.17639/nott.7307
title: The Hub for Education for Refugees in Europe Knowledge Base: Technical Report and Framework

description: The Hub for Education for Refugees in Europe (HERE) provides a central reference point for information relating to refugee education throughout Europe in the form of a curated, searchable database of academic and non-academic resources on refugee education from across the continent, published since 2015. This is supported by the HERE Network which brings together interested parties and key stakeholders in the field of refugee education through online and face-to-face activities aimed at exchanging knowledge and developing research and practice on refugee education across Europe. This technical report begins by explaining the rationale and objectives behind the HERE knowledge base, followed by a description of the methodological steps taken to build the knowledge base. The report then illustrates how researchers in education for refugees in Europe can use the HERE knowledge base.
DOI: 10.17909/qv13-yt46
title: Data used for paper 'Solid and Gaseous Methane in IRAS 23385+6053 as seen with Open JWST Data'
DOI: 10.25919/37z2-0q10
title: Soil and Landscape Grid National Soil Attribute Maps - pH (Water) (3" resolution) - Release 1

description: This is Version 1 of the Australian pH (Water) product of the Soil and Landscape Grid of Australia.

The map gives a modelled estimate of the spatial distribution of soil pH (1:5 soil water solution) in soils across Australia.

The Soil and Landscape Grid of Australia has produced a range of digital soil attribute products. Each product contains six digital soil attribute maps, and their upper and lower confidence limits, representing the soil attribute at six depths: 0-5cm, 5-15cm, 15-30cm, 30-60cm, 60-100cm and 100-200cm. These depths are consistent with the specifications of the GlobalSoilMap.net project (https://esoil.io/TERNLandscapes/Public/Pages/SLGA/Resources/GlobalSoilMap_specifications_december_2015_2.pdf). The digital soil attribute maps are in raster format at a resolution of 3 arc sec (~90 x 90 m pixels).

Detailed information about the Soil and Landscape Grid of Australia can be found at - https://esoil.io/TERNLandscapes/Public/Pages/SLGA/index.html

Attribute Definition: pH of a 1:5 soil water solution
Units: None;
Period (temporal coverage; approximately): 1950-2021;
Spatial resolution: 3 arc seconds (approx 90m);
Total number of gridded maps for this attribute: 18;
Number of pixels with coverage per layer: 2007M (49200 * 40800);
Data license : Creative Commons Attribution 4.0 (CC BY);
Target data standard: GlobalSoilMap specifications;
Format: Cloud Optimised GeoTIFF;
DOI: 10.25919/hc4s-3130
title: Soil and Landscape Grid National Soil Attribute Maps - Clay (3" resolution) - Release 2

description: This is Version 2 of the Australian Soil Clay Content product of the Soil and Landscape Grid of Australia.

It supersedes the Release 1 product that can be found at https://doi.org/10.4225/08/546EEE35164BF

The map gives a modelled estimate of the spatial distribution of clay in soils across Australia.

The Soil and Landscape Grid of Australia has produced a range of digital soil attribute products. Each product contains six digital soil attribute maps, and their upper and lower confidence limits, representing the soil attribute at six depths: 0-5cm, 5-15cm, 15-30cm, 30-60cm, 60-100cm and 100-200cm. These depths are consistent with the specifications of the GlobalSoilMap.net project (https://esoil.io/TERNLandscapes/Public/Pages/SLGA/Resources/GlobalSoilMap_specifications_december_2015_2.pdf). The digital soil attribute maps are in raster format at a resolution of 3 arc sec (~90 x 90 m pixels).

Detailed information about the Soil and Landscape Grid of Australia can be found at - https://esoil.io/TERNLandscapes/Public/Pages/SLGA/index.html

Attribute Definition: 2 μm mass fraction of the less than 2 mm soil material determined using the pipette method;
Units: %;
Period (temporal coverage; approximately): 1950-2021;
Spatial resolution: 3 arc seconds (approx 90m);
Total number of gridded maps for this attribute: 18;
Number of pixels with coverage per layer: 2007M (49200 * 40800);
Data license : Creative Commons Attribution 4.0 (CC BY);
Target data standard: GlobalSoilMap specifications;
Format: Cloud Optimised GeoTIFF;
DOI: 10.3334/cdiac/otg.co2sys_dos_cdiac105
title: Program Developed for CO2 System Calculations
DOI: 10.5281/zenodo.12607548
title: Data on the administrative workload and perceived administrative burden of farmers in Switzerland

description: We present data from a paper-and-pencil survey of Swiss farmers. The survey was mailed to 2,000 randomly selected Swiss farmers from the two largest Swiss language regions (German and French) in February 2019. A reminder was sent in April 2019. The response rate was around 40% (N = 808). In the main part of the survey, we collected quantitative data on farmers’ workload and perceived burden due to (1) overall farming activities, (2) administrative activities related to the application of direct payments, and (3) other office work related to farm planning, bookkeeping, purchasing, and sales. We also asked farmers to rate their current workload and perceived administrative burden compared to five years earlier. We also collected data on the perceived burden of using e-government services, the administrative workload of various voluntary direct payment schemes, and the workload of inspections and sanctions. We collected personal information about the farmers, such as age, education, work experience on the farm, work outside the farm, and their political activities (e.g. as a board or executive member in political or agricultural organisations). Finally, the farmers were asked to rate a series of statements regarding agricultural policy measures, the importance of inspection measures, the obligation to provide proof of eligibility for direct payments, information on current policy measures, and the justification of penalties for non-compliance with environmental or animal welfare standards. The survey results showed that, on average, Swiss farmers spent 3–5% of their total working time on administrative tasks. Based on a 60-hour working week, this means that, on average, farmers spent about 1.8–3 hours per working week on administrative activities. The farmers rated the perceived burden of administrative activities as higher than the burden of overall farming activities or other office work. The results also showed that the time spent on administrative activities and the associated perceived administrative burden had increased compared to five years earlier. Finally, the results showed that 28% of the Swiss farmers had received a penalty for non-compliance with direct payment regulations.
DOI: 10.5281/zenodo.13166027
title: Demo dataset for code to quantify the 3D biofilm biovolume in images

description: This dataset contains the raw and analyzed images that can be used as a test/demo dataset for running the code to compute the 3D biofilm biovolume. The code is stored on this Gitlab repository: https://github.com/knutdrescher/biofilm-3D-biovolume
DOI: 10.5281/zenodo.13218546
title: Experimental data sets for "Interaction-driven breakdown of Aharonov-Bohm caging in flat-band Rydberg lattices"

description: We present here all experimental data sets for the figures in main text.