cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4036308
title: Expanded molecular phylogeny of the genus <i>Bicyclus</i> (Lepidoptera: Nymphalidae) shows the importance of increased sampling for detecting semi-cryptic species and highlights potentials for future studies

description: The genus <i>Bicyclus</i> is one of the largest groups of African butterflies, but due to the generally cryptic nature and seasonal variation of adult wing patterns, there has been a lot of systematic confusion. With a large research community working with the model species <i>Bicyclus anynana</i> there has been increasing interest in the evolutionary history of the genus. A previous phylogeny started to unravel interesting patterns, but only included 61% of the then known species. With a range of new species having been described in the last decade there has been a need for an updated phylogeny for the genus. We present the most complete phylogeny of <i>Bicyclus</i> yet, including 93% of the currently 103 recognized species and make a range of taxonomic revisions. We revise the status of four previous subspecies and synonymized taxa that in the light of the new genetic data are raised to species level. We also subsume two subspecies and describe a new species, <i>Bicyclus collinsi</i> sp. nov., based on both genetic and morphological evidence. A further new taxon is identified, but not described at this point due to lack of morphological data. Our phylogeny lays a solid foundation for better understanding the evolution of <i>Bicyclus</i> and highlights key species-groups and complexes with intriguing ecological patterns making them prime candidates for future studies. http://zoobank.org/urn:lsid:zoobank.org:pub:2F775351-097E-4CD7-8F8F-A90B26D52DE8
DOI: 10.6084/m9.figshare.4036314.v1
title: Justin Survey 6 20160927 Tascam wav files

description: <br>Bayfordbury Survey<br>27 Sept 2016<br>19:00-21:00<br>Justin A T halls<br>TascamDR05 (static)<br>MEMS<br>cool, heavily overcast<br>Luton at 1950 17C 94% 1023hPa SSW 3.1m/s waning crescentSixth Bayfordbury survey of the year. Static detector (Tascam) on the logpile<br>just into the path that goes diagonally up to the clearings.<br>Usual route through the Pinetum, across to the railway track and then down that track and through<br>the wood to the memorial. Then back through the clearings and down the diagonal<br>track to collect the Tascam and back to the centre.
DOI: 10.7910/dvn/v1rjpf/4vkelf
title: ykc20150107_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036308.v1
title: Expanded molecular phylogeny of the genus <i>Bicyclus</i> (Lepidoptera: Nymphalidae) shows the importance of increased sampling for detecting semi-cryptic species and highlights potentials for future studies

description: The genus <i>Bicyclus</i> is one of the largest groups of African butterflies, but due to the generally cryptic nature and seasonal variation of adult wing patterns, there has been a lot of systematic confusion. With a large research community working with the model species <i>Bicyclus anynana</i> there has been increasing interest in the evolutionary history of the genus. A previous phylogeny started to unravel interesting patterns, but only included 61% of the then known species. With a range of new species having been described in the last decade there has been a need for an updated phylogeny for the genus. We present the most complete phylogeny of <i>Bicyclus</i> yet, including 93% of the currently 103 recognized species and make a range of taxonomic revisions. We revise the status of four previous subspecies and synonymized taxa that in the light of the new genetic data are raised to species level. We also subsume two subspecies and describe a new species, <i>Bicyclus collinsi</i> sp. nov., based on both genetic and morphological evidence. A further new taxon is identified, but not described at this point due to lack of morphological data. Our phylogeny lays a solid foundation for better understanding the evolution of <i>Bicyclus</i> and highlights key species-groups and complexes with intriguing ecological patterns making them prime candidates for future studies. http://zoobank.org/urn:lsid:zoobank.org:pub:2F775351-097E-4CD7-8F8F-A90B26D52DE8
DOI: 10.7910/dvn/v1rjpf/1ifh1f
title: ykc20151231_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036302
title: Hip adduction and abduction combined with pelvic floor contraction

description: Excel sheet containing data from twenty healthy, nulliparous women. Variables in the sheet: maximum force, instant of maximum force, mean force, force loss while contracting the pelvic floor combined with hip adduction and hip abduction in 30% and 50% of the maximum hip force.
DOI: 10.6084/m9.figshare.4036296
title: Data and Rcode from "Functional trait diversity maximizes ecosystem multifunctionality"

description: Data and R code from "Gross, N. et al. Functional trait diversity maximizes ecosystem multifunctionality. Nat. Ecol. Evol. 1, 0132 (2017)." DOI: 10.1038/s41559-017-0132.<br>
DOI: 10.6084/m9.figshare.4036302.v1
title: Hip adduction and abduction combined with pelvic floor contraction

description: Excel sheet containing data from twenty healthy, nulliparous women. Variables in the sheet: maximum force, instant of maximum force, mean force, force loss while contracting the pelvic floor combined with hip adduction and hip abduction in 30% and 50% of the maximum hip force.
DOI: 10.7910/dvn/v1rjpf/beuvn0
title: ykc20151113_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036293
title: Justin Survey 6 20160927 EM3+ wav files

description: Bayfordbury Survey<br>27 Sept 2016<br>19:00-21:00<br>Justin A T halls<br>EM3+ 384ksps 16bit + TascamDR05 (static)<br>Neumic microphone at 5%/MEMS<br>cool, heavily overcast<br>Luton at 2150 15C 77% 1023hPa ESE 3.1m/s waxing gibbousSixth Bayfordbury survey of the year. Static detector (Tascam) on the logpile<br>just into the path that goes diagonally up to the clearings.<br>Usual routwe through the Pinetum, across to the railway track and then down that track and through<br>the wood to the memorial. Then back through the clearings and down the diagonal<br>track to collect the Tascam and back to the centre.<br><br>
DOI: 10.6084/m9.figshare.4036293.v1
title: Justin Survey 6 20160927 EM3+ wav files

description: Bayfordbury Survey<br>27 Sept 2016<br>19:00-21:00<br>Justin A T halls<br>EM3+ 384ksps 16bit + TascamDR05 (static)<br>Neumic microphone at 5%/MEMS<br>cool, heavily overcast<br>Luton at 2150 15C 77% 1023hPa ESE 3.1m/s waxing gibbousSixth Bayfordbury survey of the year. Static detector (Tascam) on the logpile<br>just into the path that goes diagonally up to the clearings.<br>Usual routwe through the Pinetum, across to the railway track and then down that track and through<br>the wood to the memorial. Then back through the clearings and down the diagonal<br>track to collect the Tascam and back to the centre.<br><br>
DOI: 10.6084/m9.figshare.4036296.v2
title: Data and Rcode from "Functional trait diversity maximizes ecosystem multifunctionality"

description: Data and R code from "Gross, N. et al. Functional trait diversity maximizes ecosystem multifunctionality. Nat. Ecol. Evol. 1, 0132 (2017)." DOI: 10.1038/s41559-017-0132.<br>
DOI: 10.7910/dvn/v1rjpf/kbnn4s
title: ykc20151126_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036290
title: A machine learning approach to ornamentation modeling and synthesis in jazz guitar

description: We present a machine learning approach to automatically generate expressive (ornamented) jazz performances from un-expressive music scores. Features extracted from the scores and the corresponding audio recordings performed by a professional guitarist were used to train computational models for predicting melody ornamentation. As a first step, several machine learning techniques were explored to induce regression models for timing, onset, and dynamics (i.e. note duration and energy) transformations, and an ornamentation model for classifying notes as ornamented or non-ornamented. In a second step, the most suitable ornament for predicted ornamented notes was selected based on note context similarity. Finally, <i>concatenative synthesis</i> was used to automatically synthesize expressive performances of new pieces using the induced models. Supplemental online material for this article containing musical examples of the automatically generated ornamented pieces can be accessed at doi: 10.1080/17459737.2016.1207814 and https://soundcloud.com/machine-learning-and-jazz. In the Online Supplement we present an example of the musical piece <i>Yesterdays</i> by Jerome Kern, which was modeled using our methodology for expressive music performance in jazz guitar.
DOI: 10.6084/m9.figshare.4036296.v1
title: data_Rcode_NEE.zip

description: Data and R code for Gross et al. Published in Nature Ecology and Evolution<br>
DOI: 10.7910/dvn/v1rjpf/0wpgxx
title: ykc20151228_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036269
title: Twitter Sentiment around the Earnings Announcement Events

description: The data files consist of the (1) DJIA30 financial data (daily prices), (2) Twitter sentiment data (the number of negative, neutral and positive tweets) in hourly resolution and (3) earnings announcements data. The data are used in the analysis performed in the following paper: Gabrovšek P, Aleksovski D, Mozetič I, Grčar M, Twitter sentiment around the Earnings Announcement events. PLoS ONE 12(2): e0173151, http://dx.doi.org/10.1371/journal.pone.0173151, 2017.
DOI: 10.6084/m9.figshare.4036290.v1
title: A machine learning approach to ornamentation modeling and synthesis in jazz guitar

description: We present a machine learning approach to automatically generate expressive (ornamented) jazz performances from un-expressive music scores. Features extracted from the scores and the corresponding audio recordings performed by a professional guitarist were used to train computational models for predicting melody ornamentation. As a first step, several machine learning techniques were explored to induce regression models for timing, onset, and dynamics (i.e. note duration and energy) transformations, and an ornamentation model for classifying notes as ornamented or non-ornamented. In a second step, the most suitable ornament for predicted ornamented notes was selected based on note context similarity. Finally, <i>concatenative synthesis</i> was used to automatically synthesize expressive performances of new pieces using the induced models. Supplemental online material for this article containing musical examples of the automatically generated ornamented pieces can be accessed at doi: 10.1080/17459737.2016.1207814 and https://soundcloud.com/machine-learning-and-jazz. In the Online Supplement we present an example of the musical piece <i>Yesterdays</i> by Jerome Kern, which was modeled using our methodology for expressive music performance in jazz guitar.
DOI: 10.7910/dvn/v1rjpf/jttqhj
title: ykc20151110_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036245
title: Assisted Ground truth generation using Interactive Segmentation on a Visualization and Annotation Tool

description: This poster is related to the following paper: U. Sampathkumar, V. B. S. Prasath, S. Meena, K. Palaniappan. <strong>Assisted Ground truth generation using Interactive Segmentation on a Visualization and Annotation Tool</strong>. IEEE Applied Imagery Pattern Recognition (AIPR), Washington DC, USA.The video contains a demo of the interactive image segmentation within the Firefly tool.<br><br><br>
DOI: 10.7910/dvn/v1rjpf/wmnyew
title: ykc20151102_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/n9emnu
title: ykc20151217_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/wrdpxw
title: ykc20160901_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036245.v1
title: Firefly_InteractiveSeg_AIPR16_poster.pdf

description: Firefly is a web based tool for large image visualization and annotation. We integrate Firefly with a novel sparse seed based segmentation algorithm to enable assisted ground truth generation.
DOI: 10.7910/dvn/v1rjpf/ldzyft
title: ykc20160623_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036236
title: Digitized Appendix 6 from Van Swaay & Warren (1999) Red data book of European butterflies

description: This is digitized Appendix 6 from Van Swaay, C.A.M. & Warren, M.S. (1999) Red data book of European butterflies, Council of Europe Publishing, Strasbourg.<br><br><br>
DOI: 10.7910/dvn/v1rjpf/z2fmtm
title: ykc20171116_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/lxph3i
title: ykc20161005_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036245.v2
title: Assisted Ground truth generation using Interactive Segmentation on a Visualization and Annotation Tool

description: This poster is related to the following paper: U. Sampathkumar, V. B. S. Prasath, S. Meena, K. Palaniappan. <strong>Assisted Ground truth generation using Interactive Segmentation on a Visualization and Annotation Tool</strong>. IEEE Applied Imagery Pattern Recognition (AIPR), Washington DC, USA.
DOI: 10.7910/dvn/v1rjpf/rzllce
title: ykc20171103_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036245.v3
title: Assisted Ground truth generation using Interactive Segmentation on a Visualization and Annotation Tool

description: This poster is related to the following paper: U. Sampathkumar, V. B. S. Prasath, S. Meena, K. Palaniappan. <strong>Assisted Ground truth generation using Interactive Segmentation on a Visualization and Annotation Tool</strong>. IEEE Applied Imagery Pattern Recognition (AIPR), Washington DC, USA.
DOI: 10.7910/dvn/v1rjpf/op8kx2
title: ykc20171106_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036215
title: Additional ESM from Sexual conflict and the evolution of asexuality at low population densities

description: Theories for the evolution of sex rarely include facultatively sexual reproduction. Sexual harassment by males is an underappreciated factor: it should at first sight increase the relative advantage of asexual reproduction by increasing the cost of sex. However, if the same females can perform either sexual or asexual life cycles, then females trying to reproduce asexually may not escape harassment. If resisting male harassment is costly, it might be beneficial for a female to accept a mating and undertake a sexual life cycle rather than ‘insist’ on an asexual one. We investigate the effects of sexual harassment on the maintenance of sex under different population densities. Our model shows that resisting matings pays off at low population densities, which leads to the complete extinction of males, and thus to the evolution of completely asexual populations. Facultative sex persists in a narrow range of slightly higher densities. At high densities, selection favours giving up resisting male mating attempts and thus sexual reproduction takes over. These interactions between the outcomes of sexual conflict and population density suggest an explanation for the rarity of facultative sex and also patterns of geographical parthenogenesis, where marginal environments with potentially low densities are associated with asexuality.
DOI: 10.7910/dvn/v1rjpf/j9vaxp
title: ykc20171015_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036215.v1
title: Additional ESM from Sexual conflict and the evolution of asexuality at low population densities

description: Theories for the evolution of sex rarely include facultatively sexual reproduction. Sexual harassment by males is an underappreciated factor: it should at first sight increase the relative advantage of asexual reproduction by increasing the cost of sex. However, if the same females can perform either sexual or asexual life cycles, then females trying to reproduce asexually may not escape harassment. If resisting male harassment is costly, it might be beneficial for a female to accept a mating and undertake a sexual life cycle rather than ‘insist’ on an asexual one. We investigate the effects of sexual harassment on the maintenance of sex under different population densities. Our model shows that resisting matings pays off at low population densities, which leads to the complete extinction of males, and thus to the evolution of completely asexual populations. Facultative sex persists in a narrow range of slightly higher densities. At high densities, selection favours giving up resisting male mating attempts and thus sexual reproduction takes over. These interactions between the outcomes of sexual conflict and population density suggest an explanation for the rarity of facultative sex and also patterns of geographical parthenogenesis, where marginal environments with potentially low densities are associated with asexuality.
DOI: 10.7910/dvn/v1rjpf/url0hj
title: ykc20160914_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/iowuwm
title: ykc20160506_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036185
title: Three particles in 2D - three animations from Symmetry and reduction in collectives: low-dimensional cyclic pursuit

description: Configuration space precessing motions of three particles from three different initial conditions
DOI: 10.7910/dvn/v1rjpf/u9dwtk
title: ykc20170129_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036185.v1
title: Three particles in 2D - three animations from Symmetry and reduction in collectives: low-dimensional cyclic pursuit

description: Configuration space precessing motions of three particles from three different initial conditions
DOI: 10.7910/dvn/v1rjpf/0bajji
title: ykc20170912_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036167
title: Growth rate of the kelp Saccharina sessilis​ under different wave conditions

description: Growth rate of the kelp <i>Saccharina sessilis</i> (C. Agardh Kuntze; previously <i>Hedophyllum sessile</i>) among different wave exposures. During June and July 2013, the growth rate of S. sessilis was measured using the hole punch method (Mann 1973 <i>Science</i>) at the rocky intertidal site at Fogarty Creek, Oregon USA (44.838N, -124.058W). Three locations within that site were measured as having low, intermediate, and highly wave exposed conditions (Barner et al. 2016 <i>Journal of Ecology</i>). Growth rate was measured by making a small hole punch in multiple kelps in the different wave-exposed areas, then returning within two weeks to measure growth. Each row in the data is an independent sample - a different individual kelp plant.<br>Original Question: does growth rate of <i>S. sessilis</i> differ among wave exposures?<br><br>Variables in data (column headers)Date: year_month_dayExposure: L=low wave exposure, M=intermediate wave exposure, H = highly wave exposedLength.to.hole: the length between the holdfast and the point at which the hole was initially punched (cm)Growth: difference (in cm) between the original hole punch and the location of the punch after N daysWhen.punched?: date (year_month_day) that the growth measurement was takenN.days: the number of days of growthGrowth.per.day: growth rateWithin tide-series?: was the growth measurement taken during a period of negative low tides or not (1 or 0)
DOI: 10.6084/m9.figshare.4036182
title: Two Particles in 3D - four animations from Symmetry and reduction in collectives: low-dimensional cyclic pursuit

description: Rectilinear, helical and spiraling motions
DOI: 10.6084/m9.figshare.4036167.v1
title: Growth rate of the kelp Saccharina sessilis​ under different wave conditions

description: Growth rate of the kelp <i>Saccharina sessilis</i> (C. Agardh Kuntze; previously <i>Hedophyllum sessile</i>) among different wave exposures. During June and July 2013, the growth rate of S. sessilis was measured using the hole punch method (Mann 1973 <i>Science</i>) at the rocky intertidal site at Fogarty Creek, Oregon USA (44.838N, -124.058W). Three locations within that site were measured as having low, intermediate, and highly wave exposed conditions (Barner et al. 2016 <i>Journal of Ecology</i>). Growth rate was measured by making a small hole punch in multiple kelps in the different wave-exposed areas, then returning within two weeks to measure growth. Each row in the data is an independent sample - a different individual kelp plant.<br>Original Question: does growth rate of <i>S. sessilis</i> differ among wave exposures?<br><br>Variables in data (column headers)Date: year_month_dayExposure: L=low wave exposure, M=intermediate wave exposure, H = highly wave exposedLength.to.hole: the length between the holdfast and the point at which the hole was initially punched (cm)Growth: difference (in cm) between the original hole punch and the location of the punch after N daysWhen.punched?: date (year_month_day) that the growth measurement was takenN.days: the number of days of growthGrowth.per.day: growth rateWithin tide-series?: was the growth measurement taken during a period of negative low tides or not (1 or 0)
DOI: 10.6084/m9.figshare.4036182.v1
title: Two Particles in 3D - four animations from Symmetry and reduction in collectives: low-dimensional cyclic pursuit

description: Rectilinear, helical and spiraling motions
DOI: 10.7910/dvn/v1rjpf/nrzto6
title: ykc20160216_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/5pghbo
title: ykc20160415_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/gdhybg
title: ykc20160626_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/m2uq8m
title: ykc20170502_03.txt.gz

description: :unav
DOI: 10.4225/03/58045ef04d37d
title: Space vector models and empirical Saussurean semantics

description: Abstract of paper to be presented at ALS 2016 Conference, slides from that presentation and two image files used in presentation.<br><br>
DOI: 10.6084/m9.figshare.4036137
title: sweep nets

description: Sweep nets is a common technique to capture insects. We did 10 transects to see the difference of insects that we captured. Each time, we swept the nets for 30 times on random direction.
DOI: 10.7910/dvn/v1rjpf/xiouqm
title: ykc20160310_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036137.v1
title: sweep nets

description: Sweep nets is a common technique to capture insects. We did 10 transects to see the difference of insects that we captured. Each time, we swept the nets for 30 times on random direction.
DOI: 10.7910/dvn/v1rjpf/x0kzey
title: ykc20170423_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036134
title: Birdwatching Data Set

description: Given the two specified areas (grasslands and woodlot), we randomly chose five transects to follow in a straight line. Along these transects we stopped at random spots and listened/looked around to find any bird we could find. Once any were located we took down the information, specifically what type (if we could see it) or what sound it made. After some time went by with no new movement or sounds, we continued on the transect until we felt we had enough.
DOI: 10.7910/dvn/v1rjpf/6k5lwb
title: ykc20161210_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/t935rv
title: ykc20170206_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/nvqqqo
title: ykc20171014_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/uq69on
title: ykc20160609_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/7fctxf
title: ykc20160929_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/2jcvdw
title: ykc20161127_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/vsowct
title: ykc20171126_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/0mmnxi
title: ykc20160207_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ehorxu
title: ykc20170108_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/iqhe5n
title: ykc20160903_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/geueqw
title: ykc20160330_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/hajiv3
title: ykc20170609_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/idbnhw
title: ykc20170803_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4036077
title: Lake Victoria Atlantis model files

description: This is a complete model setup and files that were used for Prediction of Lake Victoria's response to varied fishing regimes using the Atlantis ecosystem model
DOI: 10.7910/dvn/v1rjpf/9sszul
title: ykc20160918_03.txt.gz

description: :unav