cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22360714
title: Supplementary Material for: Surgical Approaches for Possible Positions of an Olfactory Implant to Stimulate the Olfactory Bulb

description: <b><i>Introduction:</i></b> Current scientific developments seem to allow for an “olfactory implant” in analogy to cochlear implants. However, the position and surgical approaches for electrical stimulation of the olfactory system are unclear. <b><i>Methods:</i></b> In a human anatomic cadaver study, we investigated different endoscopic approaches to electrically stimulate the olfactory bulb (OB) based on the following considerations: (1) the stimulating electrode should be close to the OB. (2) The surgical procedure should be as non-invasive and safe as possible and (3) as easy as possible for an experienced ENT surgeon. <b><i>Results:</i></b> In summary, the endoscopic intracranial positioning of the electrode via a widened ostium of the fila olfactoria or a frontal sinus surgery like a Draf IIb procedure is a good option in terms of patients’ risk, degree of difficulty for ENT surgeons, and position to the OB. Endoscopic intranasal positioning appeared to be the best option in terms of patient risk and the degree of difficulty for ENT surgeons. Although a bigger approach to the OB using a drill and the combined intranasal endoscopic and external approach enabled a close placement of the electrode to the OB, they do not seem relevant in practice due to their higher invasiveness. <b><i>Conclusion:</i></b> The study suggested that an intranasal positioning of a stimulating electrode is possible, with placements beneath the cribriform plate, extra- or intracranially, applying elegant surgical techniques with low or medium risk to the patient and a close placement to OB.
DOI: 10.6084/m9.figshare.22598491
title: Supplementary Material for: The skeletal muscle transcriptome profile of elderly men with metabolic syndrome based on weighted gene co-expression network analysis

description: Introduction: This study aims to understand the transcriptome characteristics of the skeletal muscle of old man with metabolic syndrome (MS), to find the hub genes and insight into the molecular mechanisms of skeletal muscle in the occurrence and development of MS. Methods: In this study, the Limma package of R software was used to analyze the differentially expressed genes in the skeletal muscle of healthy young adult (YO) men, healthy elderly (EL) men, and elderly men diagnosed with metabolic syndrome (SX) for at least 10 years. Bioinformatics methods, such as GO enrichment analysis, KEGG enrichment analysis and gene interaction network analysis, were used to explore the biological functions of differentially expressed genes, and WGCNA was used to cluster differentially expressed genes into modules. Results: Among the YO group, EL group, and SX group, 65 co-differentially expressed genes were found may be regulated by age factor and metabolic syndrome factor. Those co-differentially expressed genes were enriched into 25 biological process terms and 3 KEGG pathways. Based on the WGCNA results, a total of five modules were identified. Fifteen hub genes may play an essential role in regulating the function of skeletal muscle of old men with metabolic syndrome. Conclusions: 65 differentially expressed genes and 5 modules may regulate the function of skeletal muscle of old men with MS, among which fifteen hub genes may play an essential role in the occurrence and development of MS.
DOI: 10.6084/m9.figshare.22656430
title: Supplementary Material for: Meta-Analysis of Electroencephalographic Correlates and Cognitive Performance for Acute Exercise-Induced Modulation

description: <b><i>Introduction:</i></b> Although abundant research delving into the acute exercise-induced modulation of cognitive performance and the P300-ERP component has been conducted, there is a lack of consensus regarding whether or not this type of intervention has a beneficial effect on cognition and how it relates to the P300-ERP. <b><i>Methods:</i></b> To examine the possible sources of this discrepancy, we conducted a meta-analysis of ERP results together with cognitive performance that were systemically stratified by relevant demographic and methodological moderators. <b><i>Results:</i></b> Our results indicate that while acute exercise exerted an overall stable effect on cognitive improvement, associated with enlarged P300 amplitudes, the effect size varied across factors of age, biological sex, exercise intensity, exercise type, control type, and experimental design. Future research taking into consideration modulating factors as to avoid misestimating the beneficial effects of acute exercise are encouraged. <b><i>Conclusion:</i></b> All in all, and to our knowledge, this is the first meta-analysis quantitatively summarizing the relevant literature on the associations between P300-ERP correlates, acute exercise, and its positive influence on attention and cognitive performance in healthy individuals.
DOI: 10.6084/m9.figshare.23294741
title: Supplementary Material for: Inflammation on the waiting list is a risk factor for new-onset prediabetes and post-transplant diabetes mellitus: a prospective study.

description: Introduction: Inflammation is a risk factor for diabetes in the general population. The role of inflammation in prediabetes or post-transplant diabetes (PTDM) is not clear. We evaluated the association between inflammatory markers in patients on the waiting list for renal transplantation and the onset of prediabetes and PTDM 12 months after transplantation. Methods: This is a post-hoc analysis of a prospective study, that included non-diabetic patients on the waiting list for kidney transplantation who underwent an oral glucose tolerance test (OGTT) and were followed up to 12 months after transplantation. At this time, those patients without PTDM underwent another OGTT. At pretransplant five cytokines: TNFα, IL6, IL1β, CRP, MCP1 were determined. The association between inflammation and prediabetes/PTDM was evaluated using multiple regression models. Results: 110 patients on the waiting list were enroled: 74 had normal glucose metabolism and 36 had prediabetes or occult diabetes. At 12 months, 53 patients had normal glucose metabolism, 25 prediabetes and 32 PTDM. In multiple regression analysis, pre-transplant inflammation was not a risk factor for prediabetes or PTDM. This was attributed to the high interrelation between obesity, prediabetes and inflammation: about 75% of the cases had these conditions. In a sub-analysis we analysed only patients without prediabetes and occult diabetes on the waiting list and found that TNFα levels and BMI at pre-transplant were independently associated with the onset of prediabetes or PTDM one year after transplantation. Conclusions: Pre-transplant inflammation and BMI are risk factors for prediabetes and PTDM in patients without glucose metabolism alterations.
DOI: 10.1285/i22840753n13p231
title: Periferie umane. La bellezza invisibile. Taranto, i paesaggi intorno alla fabbrica = Human peripheries. The invisible beauty. Taranto, the landscapes around the factory

description: Human peripheries. The invisible beauty. Taranto, the landscapes around the factory. Vito Leone, a photographer of minimalist tradition, has dedicated a lot of energy to photograph the industrial area of Taranto. Here we present a set of images whose result is a comparative study on geometric shapes, looking for a grammar and a mathematics of space and "non-places".
DOI: 10.5281/zenodo.5878436
title: An integrated dataset of daily lake surface water temperature over Tibetan Plateau

description: A dataset for daily surface temperature of 160 lakes over Tibetan Plateau for period from 1978 to 2017. The new dataset was developed based on combination of remote sensing (MODIS) and model (slightly modified <em>air2water </em>model).
DOI: 10.5281/zenodo.7474233
title: Single-cell naïve IgM VH:VL sequence data from 22 Kymice

description: Single-cell VH:VL sequencing data derived from naïve B-cells isolated from 22 Kymice. This dataset is published as part of the review process for the following preprint: https://www.biorxiv.org/content/10.1101/2022.06.27.497709v1.
DOI: 10.5281/zenodo.7947009
title: Dopamine in the Dorsal Bed Nucleus of Stria Terminalis signals Pavlovian sign-tracking and reward violations

description: Raw data associated with Gyawali et al., 2022
DOI: 10.5281/zenodo.8138861
title: The AUX1-AFB1-CNGC14 module establishes a longitudinal root surface pH profile main figures

description: Raw microscopy data associated with the publication "The AUX1-AFB1-CNGC14 module establishes a longitudinal root surface pH profile" in elife journal. Main figures
DOI: 10.5281/zenodo.8140893
title: The AUX1-AFB1-CNGC14 module establishes a longitudinal root surface pH profile supplementary figures

description: Raw microscopy data associated with the publication "The AUX1-AFB1-CNGC14 module establishes a longitudinal root surface pH profile" in elife journal. Supplementary figures
DOI: 10.5281/zenodo.8178651
title: 3D simulations of the Archean Earth including photochemical haze profiles [dataset]

description: Dataset of 3D simulations of the Archean Earth including photochemical haze profiles We present results from 3D simulations of the Archean Earth including a prescribed spherical haze generated through a 1D photochemical model. Our simulations suggest that a thin haze layer, formed when CH4/CO2 = 0.1, leads to global warming of ~10.6K due to the change of water vapour and cloud feedback, compared to the simulation without any haze. However, a thicker haze layer, formed when CH4/CO2 &gt; 0.1, leads to global cooling of up to ~65K as the scattering and absorption of shortwave radiation from the haze reduces the radiation from reaching the planetary surface. A thermal inversion is formed with a lower tropopause as the CH4/CO2 ratio increases. The haze reaches an optical threshold thickness when CH4/CO2 ~ 0.175 beyond which the atmospheric structure and the global surface temperature do not vary much. The IRIS python package developed by the Met Office is needed to analyse the data.
DOI: 10.6084/m9.figshare.22189204
title: Supplementary Material for: Bilateral serous detachments with Roth spots after COVID-19 vaccination: a case report

description: With the rise of novel (types) of vaccines during the pandemic, new side-effects are encountered. The aim of this paper is to describe an atypical case of bilateral serous detachments with Roth spots after COVID-19 vaccination using an mRNA vaccine. A healthy, 38-year-old male presented with a central scotoma and metamorphopsia in his left eye, four days after his second COVID-19 booster shot. Bilateral serous detachments were seen, with one area showing Roth spots. Patient's symptoms resolved spontaneously without any treatment. Although serous detachment after COVID-19 vaccination has been described in the context of other diseases, such as Vogt-Koyanagi-Harada disease, Central Serous Chorioretinopathy, and posterior scleritis, this is the first report of serous detachments with Roth spots as an isolated entity.
DOI: 10.6084/m9.figshare.8938052.v1
title: Creative writing and drawing activity performed by 4th grade primary-school students

description: Data gathered from the implementation of a creative writing and drawing activity performed by 4<sup>th</sup> grade primary-school students: 25 written productions and 25 graphic productions.
DOI: 10.1285/i20705948v7n1p58
title: Assessing the relational competence as the core dimension of social worker’s perceived self-efficacy through the Rasch Model

description: Perceived self-efficacy is concerned with people’s beliefs in their capabilities to succeed in specific situations and can play a major role in how one approaches goals, tasks, and challenges. There is no all-purpose measure of perceived self-efficacy but it is necessary to derive specific scales for specific contexts. This paper presents the structure of a self-efficacy scale developed for social workers. Using the Rating Scale Model as measurement model, an objective measurement of the social workers perceived self-efficacy is produced and analyzed. The differential item functioning analysis was performed in order to determine if the test questions were fair with respect of some population characteristics.
DOI: 10.18112/openneuro.ds004645.v1.0.0
title: Resting-state fMRI signals contain spectral signatures of local hemodynamic response timing
DOI: 10.5281/zenodo.5706117
title: GlobalSCAPE Diary Survey Pilot

description: The GlobalSCAPE project is setting out to investigate the experiences, attitudes, skills, needs, challenges and professional development of science communicators around the world. This is being achieved with a diary survey, a style of survey designed to be repeated on a set interval several times. To assess the clarity of survey questions prepared for the GlobalSCAPE science communicator diary research, a pilot study was conducted with a sample of participants gathered by project partners (<em>N </em>= 23). This pilot research followed a piggyback approach, where follow-up questions were asked of respondents after they completed each step in the survey. Here, we present the dataset from this pilot survey. For data privacy reasons, open-ended items were excluded from this dataset
DOI: 10.5281/zenodo.7940511
title: Comparative evaluation of apical debris extrusion during root canal preparation using three different rotary file systems

description: master chart for the study
DOI: 10.5281/zenodo.7940628
title: STROBE GUIDELINES

description: GUIDELINES
DOI: 10.6084/m9.figshare.21674369
title: Supplementary Material for: Natural History of Small Gastric Subepithelial Lesions Less than 20 mm: A Multicenter Retrospective Observational Study (NUTSHELL20 Study)

description: <b><i>Background and Aim:</i></b> Small gastric subepithelial lesions (SELs) are sometimes encountered in daily esophagogastroduodenoscopy (EGD) practice, but whether once-annual or twice-annual endoscopy can provide sufficient follow-up remains unclear. Because follow-up based on small-SEL characteristics is important, this study clarified the natural history of gastric SELs less than 20 mm. <b><i>Methods:</i></b> This retrospective multicenter observation study conducted at 24 Japanese hospitals during April 2000 to March 2020 examined small gastric SELs of ≤20 mm diameter. The primary outcome was the rate of size increase of those SELs detected using EGD, with growth times assessed irrespective of SEL pathological diagnoses. <b><i>Results:</i></b> We examined 824 cases with tumors of 1–5 mm diameter in 298 (36.2%) cases, 6–10 mm in 344 (41.7%) cases, 11–15 mm in 112 (13.6%) cases, and 16–20 mm in 70 (8.50%) cases. An increase of small gastric SELs was observed in 70/824 patients (8.5%). The SELs larger than 6 mm increased, even after 10 years. No-change and increasing groups had no significantly different malignant findings at diagnosis. In cases of gastrointestinal stromal tumors (GISTs), internal cystic change in endoscopic ultrasound (EUS) is a risk factor for an increased tumor size. The predictive tumor growth cutoff size at initial diagnosis was 13.5 mm. <b><i>Conclusions:</i></b> Small gastric SELs less than 20 mm have an approximately 8.5% chance of increase. Predictive markers for GIST growth are tumor size ≥13.5 mm and internal cystic change in EUS.
DOI: 10.6084/m9.figshare.22189129
title: Supplementary Material for: A Rare ND5 Mutation Causing Leber’s Hereditary Optic Neuropathy

description: Mutations to the ND5 gene are uncommonly associated with Leber’s Hereditary Optic Neuropathy (LHON). Herein, we describe a 57-year-old man with the m. 13528A&gt;G, p. (Thr398Ala) mutation at the ND5 gene who presented with progressive bilateral vision loss over the course of 3 months. He had a significant history of smoking and alcohol consumption. Visual field testing demonstrated bilateral central scotomas. At 2-year follow-up, his visual acuity improved relative to baseline and temporal optic disc pallor was observed in both eyes. There are scarce reports of this mutation in the literature, and this case report further expands the clinical presentation of the m. 13528A&gt;G mutation at the ND5 gene in patients with LHON phenotype.
DOI: 10.6084/m9.figshare.24235114
title: Supplementary Material for: Unilateral Melanoma-Associated Retinopathy Case Report

description: In this report, we present a case of unilateral melanoma-associated retinopathy in a 72-year-old woman. The patient's main symptoms were decreased vision and positive dysphotopsia. Unilateral electronegative electroretinogram (ERG) was suggestive for melanoma retinopathy. PET-CT discovered metastatic disease, three years after the initial melanoma. A prompt treatment with corticosteroids was started, followed by immunotherapy. The central and peripheral vision of the patient improved and the electroretinogram showed normalization of the responses. This case highlights the importance of early recognition and individualized treatment strategies for melanoma-associated retinopathy.
DOI: 10.6084/m9.figshare.22284703
title: Supplementary Material for: Oral corticosteroids for teprotumumab-related hearing loss: a case report

description: Teprotumumab is a novel IGF-1R inhibitor approved for the treatment of thyroid eye disease, but growing reports of hearing loss require further investigation. To date, an effective protocol for managing hearing loss in this setting has not been determined. Here we present the first report of the resolution of teprotumumab-related hearing loss with prompt oral prednisone. A 70-year-old woman on teprotumumab experienced sudden hearing loss and tinnitus after her first infusion. Audiogram demonstrated a mild down-sloping to moderately severe mixed conductive and sensorineural hearing loss that was promptly treated with prednisone 60 mg for 6 days with a 1-week gradual taper. Audiogram 3 weeks later demonstrated return of hearing to normal thresholds, and the whole teprotumumab treatment course was completed without further issue. This case highlights the importance of audiometric monitoring, prompt identification of hearing symptoms, and the potential for oral steroids to reverse teprotumumab-related hearing loss.
DOI: 10.6084/m9.figshare.24474487
title: Data for “The role of ocean ventilation and terrestrial outflow in the atmospheric VOC over the Chinese marginal seas”

description: Data for “The role of ocean ventilation and terrestrial outflow in the atmospheric VOC over the Chinese marginal seas”
DOI: 10.6084/m9.figshare.24474487.v1
title: Data for “The role of ocean ventilation and terrestrial outflow in the atmospheric VOC over the Chinese marginal seas”

description: Data for “The role of ocean ventilation and terrestrial outflow in the atmospheric VOC over the Chinese marginal seas”
DOI: 10.5281/zenodo.10060661
title: dataset from scopus for paper

description: This dataset was used for a paper entitled "Existence of Sharia Stocks in Previous Studies about the Usage of Regime Switching in Stock Market Dynamics"
DOI: 10.5281/zenodo.10060660
title: dataset from scopus for paper

description: This dataset was used for a paper entitled "Existence of Sharia Stocks in Previous Studies about the Usage of Regime Switching in Stock Market Dynamics"
DOI: 10.6084/m9.figshare.24458869
title: SWMR-IDEs-events-data

description: Waveform data of machine learning detected Intermediate-depth events in Southern Mariana.
DOI: 10.6084/m9.figshare.24458869.v1
title: SWMR-IDEs-events-data

description: Waveform data of machine learning detected Intermediate-depth events in Southern Mariana.
DOI: 10.17632/2wncg76nsk.1
title: Do Pandemics Trigger Death Thoughts

description: Data for manuscript 'Do Pandemics Trigger Death Thoughts?' Study 1
DOI: 10.17632/wjw8wvzc39.1
title: solanum_lycopersicum_qpcr

description: Turkey supplies 7% of world tomato production. The most severe effect of climate change occurs on agriculture. Increasing salinity on agricultural fields reduces yield, total available space, and plays a negative role in vegetative development. The salinity issue of Iğdır Plateau, which has microclimate conditions, conduce to loss of yield. The aim of this project is to gene-level determine the effects of synthetic Strigolactone GR24 on the H-2274 type tomato under saline conditions. Ten and 100 nM GR24 doses were applied to H-2274 type tomato plants cultivated on 150 mM NaCl. The expression levels of the abiotic stress-related enzymes; catalase, superoxide dismutase and glutathione reductase, and transcription factors; SlWRKY31, ERF84, NHX1, HKT1;2 were determined by Real-Time Quantitative Polymerase Chain Reaction. We think the data evaluated on the result of this project will open an avenue to the researchers who study salinity stress on tomato production. This is the raw qPCR dataset of the study exported from Rotor Gene Q 2.3.5 software.
DOI: 10.17632/cryp5mcjkb.1
title: ATR-Replication Stress_GBM Study

description: File contains source data of the manuscript: Data points and western blot images (all three independent experiments, raw files/composite images) which are used for graphs/blot/representative images in manuscript's figure panels.
DOI: 10.6084/m9.figshare.11961054
title: Weed Management in Apple Cv. Royal Delicious by Using Different Orchard Floor management Practices

description: In this study, 19-year-old apple orchard at Arabal, Shalimar, Jammu and Kashmir, India, was selected during 2015 and 2016. Forty-five trees were treated with paddy straw mulch, paddy straw mulch followed by glyphosate @ 2.0 l ha<sup>−1</sup>, oxyflourfen @ 1.0 l ha<sup>−1</sup>, oxyflourfen @ 1.0 l ha<sup>−1</sup> followed by glyphosate @ 2.0 l ha<sup>−1</sup>, atrazine @ 3.0 kg ha<sup>−1</sup>, atrazine @ 3.0 kg ha<sup>−1</sup> followed by glyphosate @ 2.0 l ha<sup>−1</sup>, pendimethalin @ 2.0 l ha<sup>−1</sup>, pendimethalin @ 2.0 l ha<sup>−1</sup> followed by glyphosate @ 2.0 l ha<sup>−1</sup>, bicolor polythene mulch, cowpea, white clover, clean cultivation, farmer practices, zero weeds and control. Three replications were maintained in a randomized complete block design. Minimum weeds (0.0) and weed control efficiency (100%) were recorded in zero weeds, bicolor polythene mulch and in paddy straw mulch followed by glyphosate. High levels of soil nutrients, large annual shoot extension (49.3 and 50.2 cm) and leaf area (77.83 and 78.57 cm<sup>−2</sup>) with maximum fruit yield (82.03 and 80.60 kg/tree) were recorded in paddy straw mulch followed by glyphosate during 2015 and 2016, respectively. Paddy straw mulch followed by glyphosate can be used for effective weed control with improved yield and growth characters of apple.
DOI: 10.6084/m9.figshare.11961054.v1
title: Weed Management in Apple Cv. Royal Delicious by Using Different Orchard Floor management Practices

description: In this study, 19-year-old apple orchard at Arabal, Shalimar, Jammu and Kashmir, India, was selected during 2015 and 2016. Forty-five trees were treated with paddy straw mulch, paddy straw mulch followed by glyphosate @ 2.0 l ha<sup>−1</sup>, oxyflourfen @ 1.0 l ha<sup>−1</sup>, oxyflourfen @ 1.0 l ha<sup>−1</sup> followed by glyphosate @ 2.0 l ha<sup>−1</sup>, atrazine @ 3.0 kg ha<sup>−1</sup>, atrazine @ 3.0 kg ha<sup>−1</sup> followed by glyphosate @ 2.0 l ha<sup>−1</sup>, pendimethalin @ 2.0 l ha<sup>−1</sup>, pendimethalin @ 2.0 l ha<sup>−1</sup> followed by glyphosate @ 2.0 l ha<sup>−1</sup>, bicolor polythene mulch, cowpea, white clover, clean cultivation, farmer practices, zero weeds and control. Three replications were maintained in a randomized complete block design. Minimum weeds (0.0) and weed control efficiency (100%) were recorded in zero weeds, bicolor polythene mulch and in paddy straw mulch followed by glyphosate. High levels of soil nutrients, large annual shoot extension (49.3 and 50.2 cm) and leaf area (77.83 and 78.57 cm<sup>−2</sup>) with maximum fruit yield (82.03 and 80.60 kg/tree) were recorded in paddy straw mulch followed by glyphosate during 2015 and 2016, respectively. Paddy straw mulch followed by glyphosate can be used for effective weed control with improved yield and growth characters of apple.