cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25452/figshare.plus.27327879
title: iPSCORE Phenotype Metadata: Element Coordinate Bed Files

description: This directory contains 6 files for the genomic coordinates in the hg38 build for the genes, ATAC-seq peaks, and H3K27ac ChIP-seq peaks from three tissues from the iPSCORE Collection; induced pluripotent stem cells (iPSCs), iPSC-derived cardiovascular progenitor cells (CVPCs), and iPSC-derived pancreatic progenitor cells (PPCs). Each file has a BED-like format. The five ATAC-seq and H3K27ac ChIP-seq peak files have a [tissue_phenotype_peaks.bed] labeling convention and have the same columns, including <b>Chromosome</b>, <b>Start</b>, <b>End </b>describing the genomic coordinates, <b>Element_ID </b>the identifier for the ATAC-seq or ChIP-seq peak, and <b>Expressed </b>TRUE/FALSE based on whether the peak is considered accessible/acetylated after filtering. To obtain the elements tested for QTLs, rows can be filtered by <b>Expressed</b> == "TRUE".Since gene coordinates are fixed, the <i>gene_info.txt.gz</i> file contains information about which genes were considered expressed for all three tissues. The first three columns are the chromsome, start and end Gencode hg38 coordinates, the strand, gene ID and gene name are reported in the next three columns. The last three columns are <b>iPSC_Expressed</b>, <b>CVPC_Expressed</b>, and <b>PPC_Expressed </b>and indicate (TRUE/FALSE) whether the gene is expressed in the corresponding tissue and tested for QTLs.
DOI: 10.15468/dl.d4ntyg
title: Occurrence Download

description: A dataset containing 16862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Dasypus novemcinctus Linnaeus, 1758"
 ]
}

 The dataset includes 16862 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013147-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27704220
title: Database on ICD-11 MBND course modes for Spanish-speaking clinicians

description: The Clinical Descriptions and Diagnostic Guidelines (CDDG) for the eleventh version of the WHO´s International Classification of Diseases (ICD-11), and Mental, Behavioral and Neurodevelopmental Disorders (MBND) constitute a substantial improvement over ICD-10 MBND CDDG. As part of the efforts to implement ICD-11 MBND CDDG in Spanish-speaking countries through continuing education for health professionals, this study was designed to evaluate the usefulness of a comprehensive online training course and its modalities (synchronous and asynchronous) to increase both the knowledge of and readiness to use this novel, evidence-based diagnostic tool. <b>METHOD</b>: A sample of Spanish-speaking psychiatrists, psychologists and general practitioners completed pre- and/or post-evaluations of one of the two modalities of ICD-11 MBND CDDG (asynchronous or synchronous). Knowledge of the material was evaluated at the end of the course through an ad hoc multiple-choice questionnaire, and readiness to implement ICD-11 MBND CDDG<i> </i>was evaluated before and after the course using an instrument based on the transtheoretical model developed by Prochaska and Diclemente, consisting of a linear scheme with five stages of change: precontemplation, contemplation, preparation, action, and maintenance. <b>RESULTS</b>: More women than men, younger health professionals and more clinicians from Mexico than any other country participated in the synchronous than in the asynchronous course. Prior to the course, most participants were at the pre-contemplation stage of readiness to implement the ICD-11 MBND CDDG. By the end of the course, participants reported a moderate level of knowledge of the ICD-11 MBND CDDG (with those in the synchronous course reporting higher levels of knowledge than those in the asynchronous one), while the percentage of clinicians at the preparation and action stages was higher than before the courses (with no differences being observed by course modes). <b>CONCLUSIONS</b>: Online training proved useful for achieving a moderate level of knowledge of the ICD-11 MBND CDDG and a substantial increase in clinicians’ readiness to implement them as part of their regular professional practice. Whichever course mode is preferred and feasible is recommended for interested Spanish-speaking clinicians.
DOI: 10.6084/m9.figshare.27704220.v1
title: Database on ICD-11 MBND course modes for Spanish-speaking clinicians

description: The Clinical Descriptions and Diagnostic Guidelines (CDDG) for the eleventh version of the WHO´s International Classification of Diseases (ICD-11), and Mental, Behavioral and Neurodevelopmental Disorders (MBND) constitute a substantial improvement over ICD-10 MBND CDDG. As part of the efforts to implement ICD-11 MBND CDDG in Spanish-speaking countries through continuing education for health professionals, this study was designed to evaluate the usefulness of a comprehensive online training course and its modalities (synchronous and asynchronous) to increase both the knowledge of and readiness to use this novel, evidence-based diagnostic tool. <b>METHOD</b>: A sample of Spanish-speaking psychiatrists, psychologists and general practitioners completed pre- and/or post-evaluations of one of the two modalities of ICD-11 MBND CDDG (asynchronous or synchronous). Knowledge of the material was evaluated at the end of the course through an ad hoc multiple-choice questionnaire, and readiness to implement ICD-11 MBND CDDG<i> </i>was evaluated before and after the course using an instrument based on the transtheoretical model developed by Prochaska and Diclemente, consisting of a linear scheme with five stages of change: precontemplation, contemplation, preparation, action, and maintenance. <b>RESULTS</b>: More women than men, younger health professionals and more clinicians from Mexico than any other country participated in the synchronous than in the asynchronous course. Prior to the course, most participants were at the pre-contemplation stage of readiness to implement the ICD-11 MBND CDDG. By the end of the course, participants reported a moderate level of knowledge of the ICD-11 MBND CDDG (with those in the synchronous course reporting higher levels of knowledge than those in the asynchronous one), while the percentage of clinicians at the preparation and action stages was higher than before the courses (with no differences being observed by course modes). <b>CONCLUSIONS</b>: Online training proved useful for achieving a moderate level of knowledge of the ICD-11 MBND CDDG and a substantial increase in clinicians’ readiness to implement them as part of their regular professional practice. Whichever course mode is preferred and feasible is recommended for interested Spanish-speaking clinicians.
DOI: 10.25452/figshare.plus.27327825
title: iPSCORE Multiomic QTLs: Phenotype Count Matrices

description: This directory contains one sample metadata file and eight count files corresponding to the gene, ATAC-seq peak, and H3K27ac ChIP-seq peak counts from three tissues from the iPSCORE Collection; induced pluripotent stem cells (iPSCs), iPSC-derived cardiovascular progenitor cells (CVPCs), and iPSC-derived pancreatic progenitor cells (PPCs).Each file has the same format. The first column contains the identifier for the molecular element (gene or peak) and the remaining column corresponds to the phenotype (sample) identifier found in the <i>SampleMetadata</i> file. The <i>SampleMetadata</i> is identical to Supplemental Table 2 in the publication. Please see the Table legends in the linked publication for more details.The labeling convention is [tissue_phenotype_counts.txt].
DOI: 10.25452/figshare.plus.27327585
title: iPSCORE ATAC-seq: Transcription Factor Binding Predictions

description: This directory contains three files corresponding to transcription factor binding predictions in ATAC-seq peaks from induced pluripotent stem cells (iPSCs), iPSC-derived cardiovascular progenitor cells (CVPCs), and iPSC-derived pancreatic progenitor cells (PPCs) from the iPSCORE Collection. Transcription factor binding predictions were calculated by TOBIAS (Bentsen et al 2020) using both JASPAR and HOCOMOCO motifs. The files are labeled as [<i>tissue</i>]_<i>JASPAR_</i><i>HOCOMOCO_</i><i>Results_</i>.txt. Each file has the following columns: <b>Tissue</b> the corresponding tissue; <b>Peak_ID</b> the identifier for the ATAC-seq peak; <b>Database</b> the motif database (either JASPAR or HOCOMOCO); <b>TFBS_name</b> the name of the motif; <b>Bound</b> whether the binding site was predicted to be bound by TOBIAS; <b>TFBS_Chromsome</b><i>, </i><b>TFBS_Start</b><i>, </i><b>TFBS_End</b> the genomic coordinates of the binding site in the hg38 build; <b>TFBS_score</b> the score of the binding site calculated by TOBIAS; and <b>TFBS_Strand</b> which strand the binding site is on.
DOI: 10.15468/dl.5zrvdd
title: Occurrence Download

description: A dataset containing 61192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Carnivora"
 ]
}

 The dataset includes 61192 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013148-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zpg8r
title: Occurrence Download

description: A dataset containing 16862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Dasypus novemcinctus Linnaeus, 1758"
 ]
}

 The dataset includes 16862 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013149-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxrdv7
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is CAN.11_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus terricola Kirby, 1837",
 "Year 1990-2024"
 ]
}

 The dataset includes 376 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013152-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxumma
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia blechoides (Lindau) Stearn"
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013150-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zwphj
title: Occurrence Download

description: A dataset containing 13173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-108.502 20.282,-99.43 20.282,-99.43 34.179,-108.502 34.179,-108.502 20.282))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Athene cunicularia (Molina, 1782)"
 ]
}

 The dataset includes 13173 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013151-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27703518
title: Bathyarchaeia phylogenomic tree and 16S rRNA tree

description: Phylogenomic tree made in Gtotree and 16S rRNA tree of Bathyarchaeia MAGs.
DOI: 10.15468/dl.2j9fru
title: Occurrence Download

description: A dataset containing 5353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Myocastor coypus (Molina, 1782)"
 ]
}

 The dataset includes 5353 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013154-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7kd45
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Crocus ilvensis Peruzzi & Carta"
 ]
}

 The dataset includes 76 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013156-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc6v56
title: Occurrence Download

description: A dataset containing 9817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.77894 9.49706,-73.77688 9.41982,-73.72536 9.39339,-73.60791 9.36697,-73.48015 9.37103,-73.37918 9.39949,-73.36063 9.44015,-73.35857 9.50113,-73.36269 9.56006,-73.34415 9.66571,-73.48839 9.71852,-73.67178 9.69211,-73.74391 9.66571,-73.77688 9.59257,-73.77894 9.49706))",
 "HasGeospatialIssue is false",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 9817 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013155-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.997wpd
title: Occurrence Download

description: A dataset containing 258212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Geometry POLYGON((-84.09383 9.97179,-84.09152 9.97265,-84.09231 9.97515,-84.09365 9.9753,-84.09414 9.9753,-84.09454 9.9753,-84.09411 9.97394,-84.09524 9.97359,-84.09482 9.97198,-84.09399 9.97219,-84.09383 9.97179))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 258212 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013076-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.da5bkt
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is CAN.11_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Adalia bipunctata (Linnaeus, 1758)",
 "Year 1990-2024"
 ]
}

 The dataset includes 35 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013159-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pr42jx
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Panthera uncia (Schreber, 1775)"
 ]
}

 The dataset includes 115 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013162-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkuq3m
title: Occurrence Download

description: A dataset containing 16862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Dasypus novemcinctus Linnaeus, 1758"
 ]
}

 The dataset includes 16862 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013160-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xe4fc
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Crocus imperati Ten."
 ]
}

 The dataset includes 125 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013163-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2psv63
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Comocladia cordata Britton"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013164-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.je77pm
title: Occurrence Download

description: A dataset containing 10540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-124.28042 37.82262,-120.82219 33.87035,-114.49857 32.63527,-97.15801 25.91642,-95.77471 29.32525,-97.89906 48.79015,-124.87326 49.18538,-124.28042 37.82262))",
 "HasGeospatialIssue is false",
 "TaxonKey is Ixodida"
 ]
}

 The dataset includes 10540 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013165-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec9bkg
title: Occurrence Download

description: A dataset containing 258212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Geometry POLYGON((-84.09383 9.97179,-84.09152 9.97265,-84.09231 9.97515,-84.09365 9.9753,-84.09414 9.9753,-84.09454 9.9753,-84.09411 9.97394,-84.09524 9.97359,-84.09482 9.97198,-84.09399 9.97219,-84.09383 9.97179))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 258212 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013083-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt3p42
title: Occurrence Download

description: A dataset containing 6657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-124.28042 37.82262,-120.82219 33.87035,-114.49857 32.63527,-97.15801 25.91642,-95.77471 29.32525,-97.89906 48.79015,-124.87326 49.18538,-124.28042 37.82262))",
 "HasGeospatialIssue is false",
 "TaxonKey is Lepidium draba L."
 ]
}

 The dataset includes 6657 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013167-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tacs9e
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is RISC Non-Native Species Records for Zebra Mussel"
 ]
}

 The dataset includes 41 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013169-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9tehd
title: Occurrence Download

description: A dataset containing 1244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Dominican Republic, Haiti)",
 "TaxonKey is Lycopodiaceae"
 ]
}

 The dataset includes 1244 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013170-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f33k5d
title: Occurrence Download

description: A dataset containing 16862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Dasypus novemcinctus Linnaeus, 1758"
 ]
}

 The dataset includes 16862 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013171-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pf6b5p
title: Occurrence Download

description: A dataset containing 11414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen, Living Specimen, Occurrence evidence, Machine Observation, Human Observation, Material citation, Fossil)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cerdocyon thous (Linnaeus, 1766)"
 ]
}

 The dataset includes 11414 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013166-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ea4zzs
title: Occurrence Download

description: A dataset containing 748626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-09-18",
 "EventDate is less than or equal to 2024-10-18",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 748626 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013033-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.es3svq
title: Occurrence Download

description: A dataset containing 206372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material citation, Specimen)",
 "Country is Mexico",
 "TaxonKey is Haemorhous mexicanus (P.L.Statius Müller, 1776)"
 ]
}

 The dataset includes 206372 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013097-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.