cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gmhq1j
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Ilex collina Alexander",
 "TaxonKey is Alasmidonta heterodon (I.Lea, 1829)"
 ]
 },
 {
 "or" : [
 "Geometry POLYGON((-83.935546 36.509636,-83.935546 36.474306,-75.388183 36.474306,-75.388183 36.509636,-83.935546 36.509636))",
 "Geometry POLYGON((-84.177246 39.402244,-84.177246 36.226550,-74.838867 36.226550,-74.838867 39.402244,-84.177246 39.402244))"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "EventDate is greater than or equal to 1940-01-01"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009668-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvgpw7
title: Occurrence Download

description: A dataset containing 2667 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Nycticryphes semicollaris (Vieillot, 1816)"
 ]
}

 The dataset includes 2667 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039931-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrt7vc
title: Occurrence Download

description: A dataset containing 1208 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Henriettea succosa (Aubl.) DC."
 ]
}

 The dataset includes 1208 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009668-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5egkvy
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia langbianensis Baker fil."
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054556-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10894114
title: Statistical analysis and dataset for: Acute exposure to caffeine improves foraging in an invasive ant

description: Linked to the journal article published in iScience (https://doi.org/10.1016/j.isci.2024.109935).

Abstract

Argentine ants, Linepithema humile, are a particularly concerning invasive species. Control efforts often fall short likely due to a lack of sustained bait consumption. Using neuroactives, such as caffeine, to improve ant learning and navigation could increase recruitment and consumption of toxic baits. Here, we exposed L. humile to a range of caffeine concentrations and a complex ecologically relevant task: an open landscape foraging experiment. Without caffeine, we found no effect of consecutive foraging visits on the time the ants take to reach a reward, suggesting a failure to learn the reward’s location. However, under low to intermediate caffeine concentrations ants were 38% faster with each consecutive visit, implying that caffeine boosts learning. Interestingly, such improvements were lost at high doses. In contrast, caffeine had no impact on the ants’ homing behavior. Adding moderate levels of caffeine to baits could improve ant’s ability to learn its location, improving bait efficacy.

 



sample_videos.zip: A subset of the videos used for data extraction. The complete collection of videos is not publicly accessible primarily due to their considerable size (105.35GB). Requests for access to the entire video set are encouraged.

Preregistration.pdf: The preregistration created for data collection and analysis with justifications for deviations from it.

OpLan_D1_metadata.csv: Manually collected metadata pertaining to experimental conditions, subjects, and treatments.

OpLan_D2_DLC_coordinates.zip: Cartesian coordinates obtained from DeepLabCut for each of the videos analysed.

OpLan_C1_reproject_coordinates.py: Python code used to standardise the ants' coordinates by ensuring the same corner of the A4 platform was used as the origin of the cartesian referential of all videos. The known dimensions of the A4 were further used to convert coordinates from pixels to millimetres.

OpLan_C2_remove_impossibilities.py: Python code used to account for DeepLabCut tracking errors, with any ant movement exceeding two millimetres per frame being considered implausible and subsequently removed.

OpLan_C3_find_changepoints.py: Python code used to automatically derive the times at which an ant reached and left the reward from the tracking data.

OpLan_C4_inward_outward_data.py: Python code used to calculate relevant measures for the foodward (inward) and nestward (outward) journey such as journey duration, mean instantaneous speed and path tortuosity.

OpLan_C5_Figure_2.R: R code used to produce the raw elements of Figure 2.

OpLan_C6_Figure_4.R: R code used to produce the raw elements of Figure 4.

OpLan_C7_Statistical_Analysis.html: Complete statistical analysis and code for the manuscript.
DOI: 10.5281/zenodo.8413979
title: Statistical analysis and dataset for: Acute exposure to caffeine improves foraging in an invasive ant

description: Linked to the journal article published in iScience (https://doi.org/10.1016/j.isci.2024.109935).

Abstract

Argentine ants, Linepithema humile, are a particularly concerning invasive species. Control efforts often fall short likely due to a lack of sustained bait consumption. Using neuroactives, such as caffeine, to improve ant learning and navigation could increase recruitment and consumption of toxic baits. Here, we exposed L. humile to a range of caffeine concentrations and a complex ecologically relevant task: an open landscape foraging experiment. Without caffeine, we found no effect of consecutive foraging visits on the time the ants take to reach a reward, suggesting a failure to learn the reward’s location. However, under low to intermediate caffeine concentrations ants were 38% faster with each consecutive visit, implying that caffeine boosts learning. Interestingly, such improvements were lost at high doses. In contrast, caffeine had no impact on the ants’ homing behavior. Adding moderate levels of caffeine to baits could improve ant’s ability to learn its location, improving bait efficacy.

 



sample_videos.zip: A subset of the videos used for data extraction. The complete collection of videos is not publicly accessible primarily due to their considerable size (105.35GB). Requests for access to the entire video set are encouraged.

Preregistration.pdf: The preregistration created for data collection and analysis with justifications for deviations from it.

OpLan_D1_metadata.csv: Manually collected metadata pertaining to experimental conditions, subjects, and treatments.

OpLan_D2_DLC_coordinates.zip: Cartesian coordinates obtained from DeepLabCut for each of the videos analysed.

OpLan_C1_reproject_coordinates.py: Python code used to standardise the ants' coordinates by ensuring the same corner of the A4 platform was used as the origin of the cartesian referential of all videos. The known dimensions of the A4 were further used to convert coordinates from pixels to millimetres.

OpLan_C2_remove_impossibilities.py: Python code used to account for DeepLabCut tracking errors, with any ant movement exceeding two millimetres per frame being considered implausible and subsequently removed.

OpLan_C3_find_changepoints.py: Python code used to automatically derive the times at which an ant reached and left the reward from the tracking data.

OpLan_C4_inward_outward_data.py: Python code used to calculate relevant measures for the foodward (inward) and nestward (outward) journey such as journey duration, mean instantaneous speed and path tortuosity.

OpLan_C5_Figure_2.R: R code used to produce the raw elements of Figure 2.

OpLan_C6_Figure_4.R: R code used to produce the raw elements of Figure 4.

OpLan_C7_Statistical_Analysis.html: Complete statistical analysis and code for the manuscript.
DOI: 10.15468/dl.jueeju
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaphoglossum ophioglossoides (Goldm.) Holttum"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040011-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgmt4g
title: Occurrence Download

description: A dataset containing 5702 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Aulacorhynchus sulcatus (Swainson, 1820)"
 ]
}

 The dataset includes 5702 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054552-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcu7v7
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chassalia kolly (Schumach.) Hepper",
 "Country is Côte d’Ivoire"
 ]
}

 The dataset includes 94 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009668-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emurnt
title: Occurrence Download

description: A dataset containing 59114 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-100.23234 20.53238,-100.19188 20.53338,-100.19921 20.57241,-100.18399 20.61183,-100.19705 20.64312,-100.16261 20.7301,-100.1825 20.73342,-100.20628 20.79145,-100.21464 20.83891,-100.22763 20.86567,-100.27157 20.85539,-100.23776 20.91287,-100.20089 20.93701,-100.26362 20.971,-100.26554 20.92925,-100.29921 20.93133,-100.29839 20.91529,-100.33359 20.89073,-100.3481 20.84751,-100.37012 20.83851,-100.40043 20.80672,-100.40247 20.78008,-100.38253 20.77278,-100.38771 20.69614,-100.36022 20.69068,-100.34284 20.66708,-100.34432 20.64087,-100.33539 20.61808,-100.34599 20.60579,-100.33169 20.56975,-100.34516 20.55304,-100.32207 20.50093,-100.30078 20.51965,-100.23234 20.53238))",
 "Geometry POLYGON((-100.33359 20.89073,-100.39442 20.89217,-100.41279 20.88781,-100.46996 20.90704,-100.485 20.90078,-100.50729 20.86954,-100.50205 20.85292,-100.55933 20.82991,-100.57546 20.81842,-100.55833 20.80457,-100.56408 20.7747,-100.54812 20.74956,-100.54891 20.73638,-100.58292 20.72952,-100.59583 20.71816,-100.58128 20.69293,-100.58231 20.67682,-100.56193 20.67143,-100.55113 20.63377,-100.52954 20.63867,-100.49614 20.61571,-100.48884 20.5944,-100.43328 20.58986,-100.42369 20.55989,-100.39182 20.55533,-100.38259 20.52353,-100.3581 20.53053,-100.34516 20.55304,-100.33169 20.56975,-100.34599 20.60579,-100.33539 20.61808,-100.34432 20.64087,-100.34284 20.66708,-100.36022 20.69068,-100.38771 20.69614,-100.38253 20.77278,-100.40247 20.78008,-100.40043 20.80672,-100.37012 20.83851,-100.3481 20.84751,-100.33359 20.89073))",
 "Geometry POLYGON((-100.23234 20.53238,-100.30078 20.51965,-100.32207 20.50093,-100.34516 20.55304,-100.3581 20.53053,-100.38259 20.52353,-100.37092 20.48839,-100.39276 20.48337,-100.38406 20.45667,-100.40129 20.40715,-100.40328 20.36082,-100.39402 20.35023,-100.39202 20.31433,-100.35066 20.28841,-100.34583 20.298,-100.30751 20.28558,-100.25889 20.29018,-100.24769 20.32195,-100.21718 20.31891,-100.1953 20.32939,-100.18336 20.3594,-100.253 20.35849,-100.27788 20.41743,-100.29673 20.45051,-100.24748 20.4588,-100.2528 20.47801,-100.24013 20.50371,-100.21946 20.51916,-100.23234 20.53238))",
 "Geometry POLYGON((-100.38259 20.52353,-100.39182 20.55533,-100.42369 20.55989,-100.43328 20.58986,-100.48884 20.5944,-100.485 20.5538,-100.50477 20.55503,-100.50775 20.51852,-100.48838 20.47331,-100.48848 20.42583,-100.47827 20.41629,-100.47618 20.38961,-100.44436 20.38717,-100.41 20.37601,-100.40328 20.36082,-100.40129 20.40715,-100.38406 20.45667,-100.39276 20.48337,-100.37092 20.48839,-100.38259 20.52353))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 59114 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039999-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3qab3
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crassula montana Thunb."
 ]
}

 The dataset includes 118 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010323-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ein2wv
title: Occurrence Download

description: A dataset containing 520 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Teius teyou (Daudin, 1802)",
 "Geometry POLYGON((-88.02 -43.24,-88.02 -12.88,-32.92 -12.88,-32.92 -43.24,-88.02 -43.24))",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 520 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009668-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amcj4y
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema apoense Elmer"
 ]
}

 The dataset includes 15 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040650-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbk85u
title: Occurrence Download

description: A dataset containing 141301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alisma plantago-aquatica L."
 ]
}

 The dataset includes 141301 records from 426 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009668-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25884331
title: Occurrence Data

description: Fossil, historical, and contemporary occurrence data for ecological modeling. Data from Kovacs et al. 2020 and Chambault et al. 2022 are not provided, but can be accessed at the following links.Kovacs et al. 2020: https://data.npolar.no/dataset/395011fc-e32c-4a0c-8350-a50bffbecb1fChambault et al. 2022: https://datadryad.org/stash/dataset/doi:10.5061/dryad.tqjq2bw2c
DOI: 10.15468/dl.tyaunj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cousinia diezii Rech.fil."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010348-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jeqgdv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema arcuatipes W.T.Wang & Y.G.Wei"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040666-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ocbdgp
title: Occurrence Download

description: A dataset containing 3224 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((20.01708984375 42.744591855342215, 20.06103515625 42.52636747300661, 20.291748046875 42.27487019902452, 20.54443359375 42.128377066176654, 20.58837890625 41.867106535465105, 20.7421875 41.891646208902785, 20.7861328125 42.07131580384865, 20.89599609375 42.14467085231287, 21.148681640625 42.20980407154631, 21.26953125 42.136524483266626, 21.357421875 42.21794100686671, 21.46728515625 42.282998746833414, 21.588134765625 42.258609957817946, 21.533203125 42.347989378515344, 21.68701171875 42.43724189560813, 21.68701171875 42.52636747300661, 21.741943359375 42.67193542438402, 21.64306640625 42.67193542438402, 21.51123046875 42.71231060761333, 21.37939453125 42.744591855342215, 21.37939453125 42.86549689184563, 21.258544921875 42.90574605548178, 21.170654296875 43.02633596260183, 21.082763671875 43.090553910392444, 20.928955078125 43.13867323138745, 20.85205078125 43.210781263814155, 20.7421875 43.250804489043134, 20.6103515625 43.21878801142778, 20.687255859375 43.090553910392444, 20.654296875 43.0183039903059, 20.478515625 42.9137927368325, 20.456542968749996 42.82522146874688, 20.214843749999996 42.76072617906997, 20.01708984375 42.744591855342215))"
 ]
}

 The dataset includes 3224 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009668-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45dtaa
title: Occurrence Download

description: A dataset containing 992 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crassula moschata G.Forst."
 ]
}

 The dataset includes 992 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010335-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4me38
title: Occurrence Download

description: A dataset containing 18443 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nezumia bairdii (Goode & Bean, 1877)"
 ]
}

 The dataset includes 18443 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039907-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sy9qek
title: Occurrence Download

description: A dataset containing 5840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dermasterias imbricata (Grube, 1857)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 5840 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049041-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sw275y
title: Occurrence Download

description: A dataset containing 3482 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pardipicus nivosus (Swainson, 1837)"
 ]
}

 The dataset includes 3482 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039906-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc62lc6
title: CCDC 181237: Experimental Crystal Structure Determination

description: Related Article: Junhu Wang, T.Masashi, K.Takafumi, T.Masuo|2007|J.Rare Earths|25|647|doi:10.1016/S1002-0721(08)60001-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc62ld7
title: CCDC 181238: Experimental Crystal Structure Determination

description: Related Article: Junhu Wang, T.Masashi, K.Takafumi, T.Masuo|2007|J.Rare Earths|25|647|doi:10.1016/S1002-0721(08)60001-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8xnjb
title: CCDC 265872: Experimental Crystal Structure Determination

description: Related Article: Xuegang Chen, Quanguo Zhou, Yanxiang Cheng, Yanhou Geng, Dongge Ma, Zhiyuan Xie, Lixiang Wang|2007|J.Lumin.|126|81|doi:10.1016/j.jlumin.2006.05.008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccq9svm
title: CCDC 664821: Experimental Crystal Structure Determination

description: Related Article: Jing Feng, Hong-Jie Zhang, Shu-Yan Song, Zhe-Feng Li, Li-Ning Sun, Yan Xing, Xian-Min Guo|2008|J.Lumin.|128|1957|doi:10.1016/j.jlumin.2008.06.006
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.14920.44804
title: A Great Teacher , Soldier and Mentors Golden Advice in three pages
DOI: 10.13140/rg.2.2.35367.68008
title: Janus Particles with Hydrophobic, Hydrophilic and the Amphiphilic Medicinal Conjectures with 5th D Chimeric DNA-RNA Systems with Molecular Docking, Cymatics and Density Based Derivatives seem One of the Best Breakthrough Solutions for Covid-19 Pandemic, 6th Extinction with Lignin and STEM Education