cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20480385.v2
title: Improving CH<sub>4</sub>/O<sub>2</sub> energy ratio of meat processing wastewater treatment systems through micro-sieving

description: Micro-sieving is an effective way to prevent organic pollutants enter the main biological process and reduce aeration intensity and sludge production. However, few researchers quantified the effect of micro-sieving on meat processing wastewater treatment. The current study developed Excel-based models to compare the energy consumption and production of historical, conventional and innovative systems. Historical and conventional systems employ activated sludge (AS), nitrification, and denitrification as the main biological processes. Innovative systems are designed by using up-flow anaerobic sludge blanket (UASB) and partial nitrification/Anammox (PN/A) as the main treatment processes. Results show that the CH<sub>4</sub>/O<sub>2</sub> energy ratios of the innovative treatment system are as high as 10 times of the historical and conventional systems. Therefore, innovative system can achieve electrical self-sufficiency. Micro-sieving reduces 5% of aeration demand. Furthermore, the impact of micro-sieving on the innovative treatment systemis assessed by cost-benefit analysis. System with micro-sieving has the shortest payback time of 2.1 years and reduces cost of the innovative treatment system. An excel-based model was developed to quantify the impact of micro-sieving on energy and cost of innovative treatment system, thereby providing a valuable reference for future sustainable engineering design of meat processing wastewater treatment.
DOI: 10.6084/m9.figshare.25151621
title: Maracle_et_al_meta_database.xlsx

description: Reference sequence database of 12S sequences from 21 phyla in the kingdom Animalia available on Genbank and formatted to remove all redundancies. Included are 2777 unique sequences (downloaded on Jan 24, 2022). Database pertains to Maracle et al.'Nearshore fish diversity changes with sampling method and human disturbance: comparing eDNA metabarcoding and seine netting along the Upper St. Lawrence River.'
DOI: 10.6084/m9.figshare.25151621.v1
title: Maracle_et_al_meta_database.xlsx

description: Reference sequence database of 12S sequences from 21 phyla in the kingdom Animalia available on Genbank and formatted to remove all redundancies. Included are 2777 unique sequences (downloaded on Jan 24, 2022). Database pertains to Maracle et al.'Nearshore fish diversity changes with sampling method and human disturbance: comparing eDNA metabarcoding and seine netting along the Upper St. Lawrence River.'
DOI: 10.5281/zenodo.10623664
title: Supplementary material (data and code) for the paper "Using Wikipedia Pageview Data to Investigate Public Interest in Climate Change at a Global Scale"

description: Code and data to recreate analyses and Figures from the paper 'Using Wikipedia Pageview Data to Investigate Public Interest in Climate Change at a Global Scale' https://doi.org/10.1145/3614419.3644007

The analysis is based on the following data and code files: 

(0) The database wiki_climate.duckdb contains the pageview data. It is stored for convenience in the database but is the same data that is described and can be downloaded from this Wikimedia blogpost . The main analysis is performed in wiki_climate_analysis.R.

(1) wikidata_cc_results.csv: Contains the wikidata QIDs for all concepts that are part in WikiProject climate change, including whether this concept exists in the top 25 most visited language editions. 

(2) wiki_cc_article_size.csv: is the article size in bytes for all articles of WPCC in these LE (to create Figure 1)  For this the function in getWikiPageSize.R was used. 

(3) urls_wikidataid_map.csv and redirected_urls_wikidatamap.csv contain the QIDs of all unique URLs present in the duck_db Wikipedia pageview data. Now we can filter out only those  that are part of WPCC 

(4) WP2022_Demographic_Indicators_Medium.csv: Is used to get the population for every year so per capita pageviews can be calculated.

(5) On of the main functions is getCountryCCTotalDay() from getCountryCCTotalDay.R which needs to  run manually for each year. These years are merged and then later saved for convenience in     daily_cc_interest_total_per_country.csv

(6) The causal impact analysis can be done using the file wiki_cc_causal_impact.R.
DOI: 10.5281/zenodo.10623665
title: Supplementary material (data and code) for the paper "Using Wikipedia Pageview Data to Investigate Public Interest in Climate Change at a Global Scale"

description: Code and data to recreate analyses and Figures from the paper 'Using Wikipedia Pageview Data to Investigate Public Interest in Climate Change at a Global Scale' https://doi.org/10.1145/3614419.3644007

The analysis is based on the following data and code files: 

(0) The database wiki_climate.duckdb contains the pageview data. It is stored for convenience in the database but is the same data that is described and can be downloaded from this Wikimedia blogpost . The main analysis is performed in wiki_climate_analysis.R.

(1) wikidata_cc_results.csv: Contains the wikidata QIDs for all concepts that are part in WikiProject climate change, including whether this concept exists in the top 25 most visited language editions. 

(2) wiki_cc_article_size.csv: is the article size in bytes for all articles of WPCC in these LE (to create Figure 1)  For this the function in getWikiPageSize.R was used. 

(3) urls_wikidataid_map.csv and redirected_urls_wikidatamap.csv contain the QIDs of all unique URLs present in the duck_db Wikipedia pageview data. Now we can filter out only those  that are part of WPCC 

(4) WP2022_Demographic_Indicators_Medium.csv: Is used to get the population for every year so per capita pageviews can be calculated.

(5) On of the main functions is getCountryCCTotalDay() from getCountryCCTotalDay.R which needs to  run manually for each year. These years are merged and then later saved for convenience in     daily_cc_interest_total_per_country.csv

(6) The causal impact analysis can be done using the file wiki_cc_causal_impact.R.
DOI: 10.6084/m9.figshare.6849089
title: Supplemental Material for Jie Chen et al., 2018

description: <b>Figure S1</b> contains location distribution of the mapped reads on mRNAs. <b>Figure S2 </b>contains simulation of the inserted fragment length distribution.<b>Figure S3</b> contains Simulation of the saturation status of the transcriptome sequencing data.<b>Table S1 </b>contains the primers used for QRT-PCR and siRNA suppression assays. <b>Table S2</b> contains TopGO enrichment results of differential expression genes. <br><b>Table S3 </b>contains KEGG pathway analysis of Top 20 differentially expressed genes associated with autophagy.<b>Supplementary figure legends</b> contains legends for each figure.<br><br>
DOI: 10.6084/m9.figshare.13662720
title: Additional file 4 of Tumor mutation burden in connection with immune-related survival in uterine corpus endometrial carcinoma

description: Additional file 4. The overall survival of six immune cells.
DOI: 10.6084/m9.figshare.13662726
title: Additional file 6 of Tumor mutation burden in connection with immune-related survival in uterine corpus endometrial carcinoma

description: Additional file 6. The tumor mutation burden of uterine corpus endometrial carcinoma samples.
DOI: 10.6084/m9.figshare.16807784.v1
title: Additional file 4 of Glutamine involvement in nitrogen regulation of cellulase production in fungi

description: Additional file 4: Table S4. DEGs related to “ribosome biogenesis” in T. reesei RUT-C30 cultured in TMM with the addition of glutamine.
DOI: 10.5258/soton/d1753
title: Dataset supporting the publication "4-level Alternate-Mark-Inversion for Reach Extension in the O-band Spectral Region"

description: This dataset is supporting the following publication:
N. Taengnoi et al., "4-Level Alternate-Mark-Inversion for Reach Extension in the O-Band Spectral Region," in Journal of Lightwave Technology, vol. 39, no. 9, pp. 2847-2853, 1 May1, 2021, doi: 10.1109/JLT.2021.3062446

The data shows an improved tolerance of O-band 4-level pulse amplitude modulation (PAM4) transmission to channel impairments through the adoption of an AMI scheme. 

The data includes excel files for each figure and is contained within a directory of the same name. Data files are named after the Figure they correspond to and contain the data necessary to recreate the plots. Data for Fig-3 is omitted as it is a schematic, and Fig-5 is omitted because the data comes from screenshots.
DOI: 10.6084/m9.figshare.13662771
title: Additional file 2 of Analysis of histology and long noncoding RNAs involved in the rabbit hair follicle density using RNA sequencing

description: Additional file 2: Table S2. List of 22,136 annotated lncRNA.
DOI: 10.6084/m9.figshare.13662780
title: Additional file 4 of Analysis of histology and long noncoding RNAs involved in the rabbit hair follicle density using RNA sequencing

description: Additional file 4: Table S3, Table S4. Differentially expressed lncRNAs and genes between the LWP and HWP groups, respectively. HWP, High wool production; LWP, Low wool production.
DOI: 10.3886/e163641
title: Data and Code for: State-dependent attention and pricing decisions

description: This paper studies price-setting decisions under Rational Inattention. Prices are set by tracking an unobserved target whose distribution is also unknown. Information acquisition is dynamic and fully flexible since, given information acquired previously, price-setters choose the amount of information they collect as well as how they want to learn about both the outcome and its distribution. We show that by allowing for imperfect information to be the unique source of rigidity, the model can reconcile stylized facts in the microeconomic evidence on price setting while simultaneously being consistent with empirical results on state-dependent attention.
DOI: 10.3886/e163641v1
title: Data and Code for: State-dependent attention and pricing decisions

description: This paper studies price-setting decisions under Rational Inattention. Prices are set by tracking an unobserved target whose distribution is also unknown. Information acquisition is dynamic and fully flexible since, given information acquired previously, price-setters choose the amount of information they collect as well as how they want to learn about both the outcome and its distribution. We show that by allowing for imperfect information to be the unique source of rigidity, the model can reconcile stylized facts in the microeconomic evidence on price setting while simultaneously being consistent with empirical results on state-dependent attention.
DOI: 10.5517/ccdc.csd.cc2b5c96
title: CCDC 2150107: Experimental Crystal Structure Determination

description: Related Article: Krzesimir Korona, Michał Terlecki, Iwona Justyniak, Michał Magott, Jan Żukrowski, Arkadiusz Kornowicz, Dawid Pinkowicz, Adam Kubas, Janusz Lewiński|2022|Chem.-Eur.J.|28|e202200620|doi:10.1002/chem.202200620
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b5cb7
title: CCDC 2150108: Experimental Crystal Structure Determination

description: Related Article: Krzesimir Korona, Michał Terlecki, Iwona Justyniak, Michał Magott, Jan Żukrowski, Arkadiusz Kornowicz, Dawid Pinkowicz, Adam Kubas, Janusz Lewiński|2022|Chem.-Eur.J.|28|e202200620|doi:10.1002/chem.202200620
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f26vl
title: CCDC 2236459: Experimental Crystal Structure Determination

description: Related Article: Zhigang Tang, Wenshu Zhang, Yalun Hu, Xiaodan Jia, Lina Meng, Dan Wang, Lijuan Chen, Junwei Zhao|2023|Mater. Chem. Front.|7|1321|doi:10.1039/D3QM00062A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7775078
title: Pseudonymized Raw Data for "Automatic Core-Developer Identification on GitHub: A Validation Study"

description: Pseudonymized raw data (i.e., commit data and issue data for 25 GitHub projects) that has been used as input for the study published as "Automatic Core-Developer Identification on GitHub: A Validation Study". The pseudonymized raw data has been extracted via the tools Codeface, GitHubWrapper, BoDeGHa, and codeface-extraction (and additional manual corrections after sanity checks).
DOI: 10.5281/zenodo.7775077
title: Pseudonymized Raw Data for "Automatic Core-Developer Identification on GitHub: A Validation Study"

description: Pseudonymized raw data (i.e., commit data and issue data for 25 GitHub projects) that has been used as input for the study published as "Automatic Core-Developer Identification on GitHub: A Validation Study". The pseudonymized raw data has been extracted via the tools Codeface, GitHubWrapper, BoDeGHa, and codeface-extraction (and additional manual corrections after sanity checks).
DOI: 10.35078/z1venx
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Uberaba| Município: Santa Juliana

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.21838644
title: Supplementary Material for: Relevance of fetal brain MRI compared to ultrasound for detecting cerebral anomalies in fetuses with cleft lip and/or palate: a cohort study

description: Introduction: Relevance of fetal brain MRI in cases of cleft lip and/or palate (CL/P) is still discussed to date. The aim of our study was to review the contribution of fetal brain MRI for detecting cerebral anomalies in cases of CL/P comparing antenatal data with neonatal outcomes. Methods: A retrospective multicenter study was conducted from January 2010 to October 2020 in two multidisciplinary prenatal diagnosis centers (MDPDCs) among women with a fetal US diagnosis of CL/P. Prenatal imaging and genetic analysis data were collected, as well as postnatal data, including outcomes of children who had an abnormal prenatal MRI. Results: Among the 202 fetuses with an US diagnosis of CL/P, 96 underwent US and fetal brain MRI. 19 brain MRIs were found to be abnormal: 14 (73.7%) involved CL/P associated with other US abnormalities, and five (26.3%) involved isolated clefts of which four were cleft lip and alveolus and secondary palate (CLP). MRI identified severe abnormalities that changed the prognoses of three cases of clefts associated with other US abnormalities. In contrast, MRI found only minor abnormalities for the five isolated clefts, with no postnatal disorders found in these children. Conclusion: Fetal brain MRI should be proposed in cases of clefts associated with other anomalies or if US examination is limited by local conditions. MRI could also be discussed in cases of isolated CLP but should not be performed in cases of isolated cleft lip (CL).
DOI: 10.25345/c5zs2kp6s
title: MassIVE MSV000091559 - A panel of eight urinary proteins possess accurate and early diagnostic and risk assessment value for diabetic kidney disease in type 1 diabetes
title: Raw file for discovery and validation studies are uploaded
DOI: 10.35078/np5r7n
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Uberaba| Município: São Francisco de Sales

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.22341253
title: CRAVE_motivation states_physical activity_circadian analysis

description: <strong>See the preprint here:</strong> (PDF) Motivation states to move, be physically active and sedentary vary like circadian rhythms and are associated with affect and arousal (researchgate.net) . <br> <strong>Contact the authors for more information: </strong>matthew.stults@ynhh.org; dadina.cyrus@gmail.com; budnickc1@southernct.edu <br> <strong>Abstract: </strong> Motivation to be physically active and sedentary is a transient state that varies in response to previous behavior. It is not known: a) if motivational states vary from morning to evening, b) if they are related to feeling states (arousal/hedonic tone), and c) whether they predict current behavior and intentions. The primary purpose of this study was to determine if motivation states vary across the day and in what pattern. Thirty adults from the United States were recruited from Amazon MTurk. Participants completed 6 identical online surveys each day for 8 days beginning after waking and every 2-3 hours thereafter until bed. Participants completed: a) the CRAVE scale (Right now version) to measure motivation states for Move and Rest, b) Feeling Scale, c) Felt Arousal Scale; and d) surveys about current movement behavior (e.g., currently sitting, standing, laying down) and intentions for exercise or sleep. Of these, 21 participants (mean age 37.7; 52.4% female) had complete and valid data. Visual inspection of data determined that: a) motivation states varied widely across the day, and b) most participants had a single wave each day. Hierarchical linear modelling revealed that there were significant linear and quadratic time trends for both Move and Rest. Move peaked near 1500 hours when Rest was at its nadir. Cosinor analysis determined that the functional waveform was circadian for Move for 81% of participants and 62% for Rest. Pleasure/displeasure and arousal independently predicted motivation states (all <em>p</em>’s &lt; .001), but arousal had an association twice as large. Eating, exercise and sleep behaviors, especially those over 2 hours before assessment, predicted current motivation state. Move-motivation predicted current body position (e.g., laying down, sitting, walking) and intentions for exercise and sleep more consistently than rest, with the strongest prediction of behaviors planned for the next 30 minutes. While these data must be replicated with a larger sample, results suggest that motivation states to be active or sedentary have a circadian waveform for most people and influence future behavioral intentions. These novel results highlight the need to rethink the traditional approaches typically utilized to increase physical activity levels.
DOI: 10.6084/m9.figshare.22341253.v1
title: CRAVE_motivation states_physical activity_circadian analysis

description: <strong>See the preprint here:</strong> (PDF) Motivation states to move, be physically active and sedentary vary like circadian rhythms and are associated with affect and arousal (researchgate.net) . <br> <strong>Contact the authors for more information: </strong>matthew.stults@ynhh.org; dadina.cyrus@gmail.com; budnickc1@southernct.edu <br> <strong>Abstract: </strong> Motivation to be physically active and sedentary is a transient state that varies in response to previous behavior. It is not known: a) if motivational states vary from morning to evening, b) if they are related to feeling states (arousal/hedonic tone), and c) whether they predict current behavior and intentions. The primary purpose of this study was to determine if motivation states vary across the day and in what pattern. Thirty adults from the United States were recruited from Amazon MTurk. Participants completed 6 identical online surveys each day for 8 days beginning after waking and every 2-3 hours thereafter until bed. Participants completed: a) the CRAVE scale (Right now version) to measure motivation states for Move and Rest, b) Feeling Scale, c) Felt Arousal Scale; and d) surveys about current movement behavior (e.g., currently sitting, standing, laying down) and intentions for exercise or sleep. Of these, 21 participants (mean age 37.7; 52.4% female) had complete and valid data. Visual inspection of data determined that: a) motivation states varied widely across the day, and b) most participants had a single wave each day. Hierarchical linear modelling revealed that there were significant linear and quadratic time trends for both Move and Rest. Move peaked near 1500 hours when Rest was at its nadir. Cosinor analysis determined that the functional waveform was circadian for Move for 81% of participants and 62% for Rest. Pleasure/displeasure and arousal independently predicted motivation states (all <em>p</em>’s &lt; .001), but arousal had an association twice as large. Eating, exercise and sleep behaviors, especially those over 2 hours before assessment, predicted current motivation state. Move-motivation predicted current body position (e.g., laying down, sitting, walking) and intentions for exercise and sleep more consistently than rest, with the strongest prediction of behaviors planned for the next 30 minutes. While these data must be replicated with a larger sample, results suggest that motivation states to be active or sedentary have a circadian waveform for most people and influence future behavioral intentions. These novel results highlight the need to rethink the traditional approaches typically utilized to increase physical activity levels.
DOI: 10.5281/zenodo.7775128
title: SciExpeM - 10.5281/zenodo.7775128

description: Li et al., Energy Fuels 2009, 23, 3, 1473–1485
DOI: 10.5281/zenodo.7775127
title: SciExpeM - 10.5281/zenodo.7775128

description: Li et al., Energy Fuels 2009, 23, 3, 1473–1485