cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7654391
title: Sedimentary and drainage evolution of the Condamine Valley Transition Zone (eastern Australia)

description: The basal succession of the Condamine Valley, which overlays the boundary between the Surat and Clarence-Moreton basins (eastern Australia), contains a clay-rich horizon ‘the Transition Zone’ that marks a pronounced unconformity between the Jurassic Walloon Coal Measures and the Quaternary Condamine Alluvium. This paper provides insights into the tectonic and drainage evolution of the Condamine Valley through integrated analysis of U–Pb ages of detrital zircon from three samples (494 concordant analyses), stable oxygen isotope analysis on eight authigenic clay samples, X-ray fluorescence of primary and trace elements, and hyperspectral mineral analysis from two drill cores (Lone Pine 17 and Daandine 164). The Transition Zone is interpreted to consist of both weathered Jurassic sediments and Cenozoic clay deposits. Two sequential cycles of erosion, deposition and pedogenesis, related to geomorphological and climatic conditions are recognised. Distinctive oxygen isotope signatures of the two weathering fronts demonstrated an initial Early Cretaceous phase (δ<sup>18</sup>O = 11.9–15.7‰ VSMOW) associated with laterisation and possible uplift, followed by Paleogene (δ<sup>18</sup>O = 16.4–17.3‰ VSMOW) silcretisation of reworked Jurassic sediments. Detrital zircon geochronology yielded Jurassic maximum constraints for the age of deposition of three samples that are indistinguishable within error, the oldest of which (163 ± 8 Ma from the lateritic profile) corresponds to the age of the underlying Walloon Coal Measures. The two overlaying samples from a silcrete profile and granular alluvium yielded overlapping yet younger ages of 150 ± 6 Ma and 156 ± 9 Ma, respectively. Vitrinite reflectance used as a proxy for the thermal condition of the coal strata enabled an estimated 2–3 km of burial and subsequent (likely Early Cretaceous) uplift. Geochemical insights from the Condamine Valley correspond to broad-scale climatic and tectonic conditions, suggesting that ‘transition zone equivalents’ and corresponding groundwater dynamics may occur in similar sedimentary settings throughout eastern Australia.
DOI: 10.22008/fk2/b674ar/e3uoiv
title: r_TOA_09.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/tnrwiu
title: r_TOA_10.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.25921/1q3m-3689
title: Measurements of natural hydrocarbon gas flux in the Coal Oil Point seep field (COP1710, EK80)
DOI: 10.25921/3x3w-qf48
title: Mapping the spatial distribution of seepage activity in the Coal Oil Point seep field (COP1609, EK80)
DOI: 10.22008/fk2/b674ar/0qf21k
title: r_TOA_11.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/eqtwkq
title: r_TOA_12.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/twyihm
title: r_TOA_13.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.6084/m9.figshare.7675985
title: The cell-cycle transcriptional network generates and transmits a pulse of transcription once each cell cycle

description: Multiple studies have suggested the critical roles of cyclin-dependent kinases (CDKs) as well as a transcription factor (TF) network in generating the robust cell-cycle transcriptional program. However, the precise mechanisms by which these components function together in the gene regulatory network remain unclear. Here we show that the TF network can generate and transmit a “pulse” of transcription independently of CDK oscillations. The premature firing of the transcriptional pulse is prevented by early G1 inhibitors, including transcriptional corepressors and the E3 ubiquitin ligase complex APC<sup>Cdh1</sup>. We demonstrate that G1 cyclin-CDKs facilitate the activation and accumulation of TF proteins in S/G2/M phases through inhibiting G1 transcriptional corepressors (Whi5 and Stb1) and APC<sup>Cdh1</sup>, thereby promoting the initiation and propagation of the pulse by the TF network. These findings suggest a unique oscillatory mechanism in which global phase-specific transcription emerges from a pulse-generating network that fires once-and-only-once at the start of the cycle.
DOI: 10.22008/fk2/b674ar/his9lf
title: r_TOA_14.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/oyy66f
title: r_TOA_15.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/pu3p66
title: r_TOA_16.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/ryxmjy
title: r_TOA_17.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.6084/m9.figshare.7789133
title: February 2015 18S data

description: Mapping file and raw data associated with February 2015 18S MiSeq sequencing run. OTU table corresponding to samples used for Paulson and Martin 2019 manuscript. Environmental samples collected from Ash Meadows National Wildlife Refuge, Nevada.
DOI: 10.22008/fk2/b674ar/qwgty4
title: r_TOA_18.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.6084/m9.figshare.7689170
title: Crocodylian Head-Width Supplemental Information 2

description: Molecular-derived phylogeny of extant crocodylians, in phylip format. Includes branch lengths and polytomies for species with repeated measures / multiple individuals. SI 2 from O'Brien et al., 2019
DOI: 10.22008/fk2/b674ar/pbpazu
title: r_TOA_19.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/p6jl2a
title: r_TOA_20.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/omueea
title: r_TOA_21.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/ad6whb
title: O3.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.25345/c5kf89
title: MassIVE MSV000087261 - RAW proteowizard mzML export mzid test test test test test test test test test test
title: test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test test
DOI: 10.22008/fk2/b674ar/w8jext
title: OAA.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/oqlnzi
title: OZA.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/cwhmb8
title: SAA.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/mpind7
title: SZA.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/ps5oex
title: WV.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/lkic5v
title: r_TOA_01.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/zlgapz
title: r_TOA_02.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.6084/m9.figshare.7857647
title: Persistence of single species of symbionts across multiple closely-related host species

description: This dataset contains the MiSeq raw data and the processed representative sequences files.<br>
DOI: 10.22008/fk2/b674ar/c4jcex
title: r_TOA_03.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.24417/bmdc.be:dataset:1123
title: INRAM data (Integrated Risk Assessment and Monitoring of micropollutants in the Belgian coastal zone)

description: Missing
DOI: 10.24417/bmdc.be:dataset:1246
title: Cleanlab data VUB-ANCH

description: Missing
DOI: 10.22008/fk2/b674ar/bbhnxb
title: r_TOA_04.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/4oxhkt
title: r_TOA_05.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/rzlgxp
title: r_TOA_06.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/4znshv
title: r_TOA_07.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.5517/ccdc.csd.cc21thr4
title: CCDC 1901346: Experimental Crystal Structure Determination

description: Related Article: xia dong|2019|CSD Communication|||
description: Related Article: Dong Xia, Xin-Fang Duan|2021|Org.Lett.|23|2548|doi:10.1021/acs.orglett.1c00469
DOI: 10.6084/m9.figshare.7689170.v1
title: Crocodylian Head-Width Supplemental Information 2

description: Molecular-derived phylogeny of extant crocodylians, in phylip format. Includes branch lengths and polytomies for species with repeated measures / multiple individuals. SI 2 from O'Brien et al., 2019
DOI: 10.22008/fk2/b674ar/noazxi
title: r_TOA_08.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/epv3ts
title: r_TOA_09.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/jkenec
title: r_TOA_10.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/pkssao
title: r_TOA_11.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/sjpyi3
title: r_TOA_12.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/3uj5tt
title: r_TOA_13.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/vcsd0l
title: r_TOA_14.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/shkxje
title: r_TOA_15.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.6084/m9.figshare.7789133.v2
title: 2015 Ash Meadows 18S data

description: Mapping file and raw data associated with 2015 18S MiSeq sequencing run. OTU table corresponding to samples used for Paulson and Martin 2019 manuscript. Environmental samples collected from Ash Meadows National Wildlife Refuge, Nevada.
DOI: 10.22008/fk2/b674ar/m8zypa
title: r_TOA_16.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/2v5zds
title: r_TOA_17.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/xpnxsw
title: r_TOA_18.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/kim9gg
title: r_TOA_19.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.5281/zenodo.2582998
title: GTR-CPSPL - Qualitative Evaluation - Data Results

description: GTR-CPSPL - Qualitative Evaluation - Data Results - Coded and Analyzed using ATLAS.ti. CyPhySPL update to GTR-CPSPL - <em><strong>G</strong>uidelines <strong>T</strong>o <strong>R</strong>euse <strong>C</strong>yber-<strong>P</strong>hysical <strong>S</strong>oftware <strong>P</strong>roduct <strong>L</strong>ine</em>.
DOI: 10.5281/zenodo.2582999
title: CyPhySPL - Empirical Evaluation - Instrumentation and Data Results

description: CyPhySPL - Empirical Evaluation - Instrumentation and Data Results
DOI: 10.22008/fk2/b674ar/r6jlge
title: r_TOA_20.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.21954/ou.rd.7902320
title: Surface warming during the 2018/MY 34 Mars Global Dust Storm

description: The Surface warming during the 2018/MY 34 Mars Global Dust Storm database is composed of reanalysis products combining past spacecraft observations with a state-of-the-art Mars Global Circulation Model (MGCM), and free-running simulations of the MGCM. <br>Spacecraft observations of column dust optical depth and temperature profiles from the Mars Climate Sounder (MCS) instrument on the Mars Global Surveyor spacecraft are combined with an MGCM used at the Open University. The standard database includes 2-hourly output of key variables such as surface temperature, surface pressure, surface shortwave and longwave flux, temperature as a function of altitude, and column dust optical depth.<br>Further details on this dataset can be found in the Surface_warming_2018_GDS_dataset_reference.pdf document included in this repository.
DOI: 10.21954/ou.rd.7902320.v1
title: Surface warming during the 2018/MY 34 Mars Global Dust Storm

description: The Surface warming during the 2018/MY 34 Mars Global Dust Storm database is composed of reanalysis products combining past spacecraft observations with a state-of-the-art Mars Global Circulation Model (MGCM), and free-running simulations of the MGCM. <br>Spacecraft observations of column dust optical depth and temperature profiles from the Mars Climate Sounder (MCS) instrument on the Mars Global Surveyor spacecraft are combined with an MGCM used at the Open University. The standard database includes 2-hourly output of key variables such as surface temperature, surface pressure, surface shortwave and longwave flux, temperature as a function of altitude, and column dust optical depth.<br>Further details on this dataset can be found in the Surface_warming_2018_GDS_dataset_reference.pdf document included in this repository.
DOI: 10.6084/m9.figshare.6989012.v2
title: A DRAFT PAPER. THE CATALOG OF MUNTENIA DUCATES IN OWN COLLECTION

description: Каталог "Мунтянских дукатов" в собственной коллекции (Берген, Норвегия)<br><br>Coins in my private collection (Bergen, Norway)<br>
DOI: 10.22008/fk2/b674ar/devanb
title: r_TOA_21.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/eilcja
title: O3.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/j9mhzz
title: OAA.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/jql5ii
title: OZA.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/htaa8k
title: SAA.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/860smb
title: SZA.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/qnpzwf
title: WV.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/9jutbm
title: r_TOA_01.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.25720/veda-c11f
title: c-VEDA dataset
DOI: 10.22008/fk2/b674ar/ecwode
title: r_TOA_02.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/vjlsce
title: r_TOA_03.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/i6vabp
title: r_TOA_04.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/ucrnoi
title: r_TOA_05.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/noz2hc
title: r_TOA_06.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/eep7k9
title: r_TOA_07.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/evazxh
title: r_TOA_08.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/nwahnv
title: r_TOA_09.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/q6noxa
title: r_TOA_10.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.6084/m9.figshare.8051945
title: Force field parameters for coelenterazine

description: Force field parameters developed for coelenterazine as described in the manuscript "Atomistic insights into photoprotein formation: Computational prediction of the properties of coelenterazine and oxygen binding in Obelin" by Thomas M. Griffiths, Aaron Oakley, Haibo Yu Journal of Computational Chemistry 41 (6), 587-603.
DOI: 10.6084/m9.figshare.8051945.v2
title: Force field parameters for coelenterazine

description: Force field parameters developed for coelenterazine as described in the manuscript "Atomistic insights into photoprotein formation: Computational prediction of the properties of coelenterazine and oxygen binding in Obelin" by Thomas M. Griffiths, Aaron Oakley, Haibo Yu
DOI: 10.6084/m9.figshare.8051945.v3
title: Force field parameters for coelenterazine

description: Force field parameters developed for coelenterazine as described in the manuscript "Atomistic insights into photoprotein formation: Computational prediction of the properties of coelenterazine and oxygen binding in Obelin" by Thomas M. Griffiths, Aaron Oakley, Haibo Yu Journal of Computational Chemistry 41 (6), 587-603.
DOI: 10.22008/fk2/b674ar/oyyjyo
title: r_TOA_11.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.17632/6k4mcdgw8r.1
title: Biologic Treatment Outcomes in Refractory Eosinophilic Fasciitis: A Systematic Review of Published Reports

description: Supplemental files provide information on cases of eosinophilic fasciitis treated with biologic therapies.
DOI: 10.22008/fk2/b674ar/rwmvmn
title: r_TOA_12.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/sekfmr
title: r_TOA_13.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/hcuwe0
title: r_TOA_14.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/raxcqy
title: r_TOA_15.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.17632/8vm2v8m8zx.1
title: The therapeutic effect of Bombyx mori sericin on rat skin psoriasis through modulates epidermal immunity and attenuates cell proliferation

description: Supplementary data set of the manuscript
DOI: 10.17632/4tyj4zxnhm.1
title: morphology of aortic dissection

description: In this manuscript, the aortic morphology of 112 acute type B aortic dissection (aTBAD) patients and 112 non-aortic disease patients was analyzed via three-dimensional computed tomography imaging. The aortic morphological parameters measured included diameter, length, angulation, tortuosity and aortic arch Myla classification. Risk prediction models were developed to identify the specific geometric risk factors associated with aTBAD. Based on the data, we conclude that incremental aortic arch angulation, tortuosity and type Ⅲ arch configuration could be geometric risk factors that enhance the incidence of aTBAD besides the enlargement of the ascending aorta and aortic arch.
DOI: 10.22008/fk2/b674ar/zmpdhj
title: r_TOA_16.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.17632/xg9k72r5rt.1
title: Comparative immune profiling of acute respiratory distress syndrome patients with or without SARS-CoV2 infection. Roussel et al

description: Acute respiratory distress syndrome (ARDS) is the main complication of COVID-19, requiring admission to Intensive Care Unit (ICU). Despite extensive immune profiling of COVID-19 patients, to what extent COVID-19-associated ARDS specifically differs from other causes of ARDS remains unknown. To address this crucial question, we build 3 cohorts of patients categorize in COVID-19negARDSpos, COVID-19posARDSpos, and COVID-19posARDSneg, and compare their immune landscape analyze by high-dimensional mass cytometry on peripheral blood follow by machine-learning based analysis. A cell signature associating S100A9/calprotectin-producing CD169pos monocytes, plasmablasts, and Th1 cells is found in COVID-19posARDSpos, unlike COVID-19negARDSpos patients. Moreover, this signature is essentially share with COVID-19posARDSneg patients, suggesting that severe COVID-19 patients, whatever they experience or not ARDS, display similar immune profiles. We also show an increase in CD14posHLA-DRlow and CD14lowCD16pos monocytes correlate to the occurrence of adverse events during ICU stay. Our study demonstrates that COVID-19-associated ARDS display a specific immune profile, and might benefit from personalize therapy in addition to standard ARDS management. Analyses were performed on a cohort 1 of 63 cryopreserved PBMC samples isolated from 42 patients included in ICU (n = 36) or infectious standard ward (n = 6). All patients but one were classified as severe at admission, requiring oxygen at a flow rate higher than 2 liters/min. ARDS was defined in accordance with international guidelines.34 Patients were classified in 3 groups: COVID-19negARDSpos (n = 12, ARDS stages: 1 mild, 4 moderate, 7 severe), COVID-19posARDSpos (n = 13, ARDS stages: 8 moderate, 5 severe), and COVID-19posARDSneg (n = 17, including 11 from ICU and 6 from infectious standard ward). In the COVID-19posARDSneg, no statistical differences were noticed for immune cell abundance or phenotype between ICU and standard ward patients. Within the COVID-19negARDSpos group, ARDS etiologies were bacterial pneumonia (n = 9), anti-synthetase syndrome (n = 1), and unknown (n = 2). For 21 patients, a second blood sample obtained on day 7 after enrollment was studied (n = 7 for COVID-19negARDSpos, n = 8 for COVID-19posARDSpos, and n = 6 for COVID-19posARDSneg). Additionally, a validation cohort (cohort 2) was set up with 16 patients with demographic data detailed in Table S1 and Table S2. Patients were classified in 3 groups: COVID-19negARDSpos (n = 6), COVID-19posARDSpos (n = 5), and COVID-19posARDSneg (n = 3); additionally, COVID-19negARDSneg (n = 2) samples were included. None of our patients received corticosteroids at the time of the study nor immune-modulators. The presence of SARS-CoV-2 in respiratory specimens (nasal and pharyngeal swabs or sputum) was detected by real-time reverse transcription polymerase chain reaction (RT-PCR) methods.
DOI: 10.22008/fk2/b674ar/sd4e6l
title: r_TOA_17.tif

description: SICE version: Cloud removed, PPGC, SNAP7
DOI: 10.22008/fk2/b674ar/p91ohj
title: r_TOA_18.tif

description: SICE version: Cloud removed, PPGC, SNAP7