cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive140170.20201210.5
title: Aphanothece stagnina

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140171.20201210.5
title: Tolipothrix sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140172.20201210.5
title: Synechococcus rubescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.17149208.v4
title: CRISPR/Cas12a-based assay for the detection of streptococcus agalactiae colonization in pregnant women with premature rupture of membrane.xlsx

description: <b>Aims: </b><i>Streptococcus agalactiae</i> (GBS) is a leading infectious cause of neonatal morbidity and mortality. It is essential to establish a rapid and sensitive method for the detection of GBS.<b>Methods and Results:</b> This study developed a CRISPR-GBS assay that combines recombinase polymerase amplification (RPA) and CRISPR/Cas12a for GBS detection. The detection process can be completed within 35 min, compared to 85 min for quantitative real-time PCR (qPCR) assay and 48-72h for culture method. The limit of detection (LoD) was as low as 5 copies μL<sup>-1</sup> and no cross-reaction with other microorganisms was observed. The clinical performance of CRISPR-GBS assay was assessed using vaginal or cervical swab samples collected from 179 pregnant women with premature rupture of membrane. Compared with the culture-based matrix-assisted laser desorption ionization time-of-flight mass spectrometry (culture-MS) method, the CRISPR-GBS assay demonstrated a sensitivity of 96.64% (144/149, 95% confidence interval [CI] = 92.39–98.56%) and a specificity of 100 % (30/30, 95% CI = 88.65–100%). It also had a high concordance rate of 98.88% with the qPCR assay. <b>Conclusions:</b> The established CRISPR-GBS platform can detect GBS in a rapid, accurate, easy-to-operate and cost-efficient manner. <b>Significance and Impact of the Study: </b>The CRISPR-GBS assay has promising prospects as a clinically useful point-of-care test for intrapartum screening of GBS infection. <b></b>
DOI: 10.13145/bacdive140173.20201210.5
title: Synechococcus rubescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140174.20201210.5
title: Synechococcus rubescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140175.20201210.5
title: Synechococcus rubescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140176.20201210.5
title: Synechococcus rubescens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140177.20201210.5
title: Spirulina sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140178.20201210.5
title: Spirulina subsalsa

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140179.20201210.5
title: Nodularia sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140180.20201210.5
title: Oscillatoria sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive140181.20201210.5
title: Phormidium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.14803416.v2
title: figure 1

description: FIGURE 1
DOI: 10.3886/e111107v1-107460
title: National Neighborhood Data Archive (NaNDA): Neighborhood Socioeconomic and Demographic Characteristics of Census Tracts, United States, 2000-2010

description: This dataset contains measures of socioeconomic and demographic characteristics by US census tract for the years 2000-2010. Example measures include population density; population distribution by race, ethnicity, age, and income; and proportion of population living below the poverty level, receiving public assistance, and female-headed families. The dataset also contains a set of index variables to represent neighborhood disadvantage and affluence.
description: All census tracts in the United States, including Puerto Rico. Smallest Geographic Unit: Census tract
description: This dataset is complemented by a similar version (National Neighborhood Data Archive (NaNDA): Socioeconomic Status and Demographic Characteristics of Census Tracts, United States, 2008-2017, https://www.openicpsr.org/openicpsr/project/119451) which is based on the same theoretical findings and covers the period 2008-2017. Users wanting to combine this dataset with measures from 2008-2017 should be aware of key differences between how measures are calculated across the two datasets. For more information, see the "Usage Note" section of the documentation.
DOI: 10.6084/m9.figshare.11796498.v3
title: NEON-GEOSPATIAL-PYTHON-DATASETS.zip

description: This is a slimmed down version of the NEON Spatio-temporal Teaching Data Subset, which is available at https://figshare.com/articles/Spatio_temporal_Series_Teaching_Data_Subsets/2009586 . It's used in the Carpentries Geospatial Python workshop (currently in incubator stage) and removes unused hillshade files and adds WGS84 DTM and DSM files.<br>CONTENTS:NEON-DS-Met-Time-Series.zip: Precipitation, temperature and other variables collected from a flux tower at the NEON Harvard Forest site. NOTE: these data are not collected from the NEON tower.NEON-DS-Site-Layout-Files.zip: A set of shapefiles for the NEON's Harvard Forest field site and US and (some) state boundary layers.NEON-DS-Landsat-NDVI.zip: 2011 NDVI data product provided by USGS cropped to NEON's Harvard Forest and San Joaquin Experimental Range field sites.NEON-DS-Airborne-RemoteSensing.zip: LiDAR data including a canopy height model, digital elevation model and digital surface model for NEON's Harvard Forest and San Joaquin Experimental Range field sites.<br><br>
DOI: 10.6084/m9.figshare.14060198
title: Evaluation of the High Resolution Melting Approach for Detection of β-Thalassemia Gene Mutations

description: β-Thalassemia (β-thal), an autosomal recessive hemoglobinopathy, is one of the most common genetic disorders in Pakistan. Awareness of this disease, genetic counseling, extended family carrier screening and prenatal diagnosis (PND) are helpful in prevention and control. Currently, direct DNA sequencing and multiple amplification refractory mutation system-polymerase chain reaction (MARMS-PCR) are the methods used to detect β-thal mutations, the latter being the most widely used. This study aimed to evaluate PCR-high resolution melting (PCR-HRM) analysis for the detection of most common β-thal mutations that are found in Pakistan. This study was designed to identify the β-thal mutations using PCR-HRM analysis in a total of 90 samples [blood and chorionic villus sampling (CVS)]. These samples were first screened for routine mutations by MARMS-PCR and then evaluated by PCR-HRM analysis. The results of PCR-HRM analyses were further confirmed by direct DNA sequencing and all analyses interpreted the same results in all 90 samples. Eleven cases (36.6%) were detected to carry IVS-I-5 (G&gt;C) (<i>HBB</i>: c0.92 + 5G&gt;C), six cases (20.0%) with frameshift codons (FSC) 41/42 (–TTCT) (<i>HBB</i>: c.126_129delCTTT), five cases (16.0%) were diagnosed with codon 15 (G&gt;A) (<i>HBB</i>: c.47G&gt;A), three cases (10.0%) were found with codon 30 (G&gt;C) (<i>HBB</i>: c.93G&gt;C), one case was diagnosed with FSC 16 (–C) (<i>HBB</i>: c.51delC), one with IVS-I-1 (G&gt;T) (<i>HBB</i>: c0.92 + 1G&gt;T) and one with codon 5 (–CT) (<i>HBB</i>: c.17_18delCT). The PCR-HRM analysis represents a less tedious and more useful method for the detection of β-globin gene mutations.
DOI: 10.6084/m9.figshare.14060198.v1
title: Evaluation of the High Resolution Melting Approach for Detection of β-Thalassemia Gene Mutations

description: β-Thalassemia (β-thal), an autosomal recessive hemoglobinopathy, is one of the most common genetic disorders in Pakistan. Awareness of this disease, genetic counseling, extended family carrier screening and prenatal diagnosis (PND) are helpful in prevention and control. Currently, direct DNA sequencing and multiple amplification refractory mutation system-polymerase chain reaction (MARMS-PCR) are the methods used to detect β-thal mutations, the latter being the most widely used. This study aimed to evaluate PCR-high resolution melting (PCR-HRM) analysis for the detection of most common β-thal mutations that are found in Pakistan. This study was designed to identify the β-thal mutations using PCR-HRM analysis in a total of 90 samples [blood and chorionic villus sampling (CVS)]. These samples were first screened for routine mutations by MARMS-PCR and then evaluated by PCR-HRM analysis. The results of PCR-HRM analyses were further confirmed by direct DNA sequencing and all analyses interpreted the same results in all 90 samples. Eleven cases (36.6%) were detected to carry IVS-I-5 (G&gt;C) (<i>HBB</i>: c0.92 + 5G&gt;C), six cases (20.0%) with frameshift codons (FSC) 41/42 (–TTCT) (<i>HBB</i>: c.126_129delCTTT), five cases (16.0%) were diagnosed with codon 15 (G&gt;A) (<i>HBB</i>: c.47G&gt;A), three cases (10.0%) were found with codon 30 (G&gt;C) (<i>HBB</i>: c.93G&gt;C), one case was diagnosed with FSC 16 (–C) (<i>HBB</i>: c.51delC), one with IVS-I-1 (G&gt;T) (<i>HBB</i>: c0.92 + 1G&gt;T) and one with codon 5 (–CT) (<i>HBB</i>: c.17_18delCT). The PCR-HRM analysis represents a less tedious and more useful method for the detection of β-globin gene mutations.
DOI: 10.5281/zenodo.5899748
title: FrogID dataset v3.0

description: FrogID dataset Version 3.0.<br> <br> Data from the FrogID project (https://www.frogid.net.au/), hosted by the Australian Museum (https://australianmuseum.net.au/) from Nov. 10th, 2017 - Nov. 9th, 2020. More information, including methodology is in the following papers (and the former is the primary citation for the project): Rowley, J.J.L., Callaghan, C.T., Cutajar, T., Portway, C., Potter K., Mahony, S, Trembath, D.F., Flemons, P. & Woods, A. (2019). FrogID: Citizen scientists provide validated biodiversity data on frogs of Australia. Herpetological Conservation and Biology 14(1): 155-170. full text. Rowley, J.J.L, Callaghan CT (2020) The FrogID dataset: expert-validated occurrence records of Australia’s frogs collected by citizen scientists. ZooKeys 912: 139-151. full text.
DOI: 10.5281/zenodo.3612699
title: FrogID dataset v3.0

description: FrogID dataset Version 3.0.<br> <br> Data from the FrogID project (https://www.frogid.net.au/), hosted by the Australian Museum (https://australianmuseum.net.au/) from Nov. 10th, 2017 - Nov. 9th, 2020. More information, including methodology is in the following papers (and the former is the primary citation for the project): Rowley, J.J.L., Callaghan, C.T., Cutajar, T., Portway, C., Potter K., Mahony, S, Trembath, D.F., Flemons, P. & Woods, A. (2019). FrogID: Citizen scientists provide validated biodiversity data on frogs of Australia. Herpetological Conservation and Biology 14(1): 155-170. full text. Rowley, J.J.L, Callaghan CT (2020) The FrogID dataset: expert-validated occurrence records of Australia’s frogs collected by citizen scientists. ZooKeys 912: 139-151. full text.
DOI: 10.6084/m9.figshare.19027760
title: Evidence of Nonlinear Seismic Effects in the Earth from Downhole Distributed Acoustic Sensors

description: This dataset supports the publication Evidence of Nonlinear Seismic Effects in the Earth from Downhole Distributed Acoustic Sensors by Yurikov et al. (2022)
DOI: 10.6084/m9.figshare.19027760.v1
title: Evidence of Nonlinear Seismic Effects in the Earth from Downhole Distributed Acoustic Sensors

description: This dataset supports the publication Evidence of Nonlinear Seismic Effects in the Earth from Downhole Distributed Acoustic Sensors by Yurikov et al. (2022)
DOI: 10.5519/qd.nodpb2yh
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (49 records)
DOI: 10.5519/qd.1k4bqeet
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (49 records)
DOI: 10.5281/zenodo.4552853
title: Dataset for paper "the role of ocean-atmosphere interactions in atmospheric river events: simulations from a coupled model"

description: Here is the post-processed data from the coupled simulation results. save_correct folder has all the data. plot_stat folder has the scripts to plot the figures in the paper. temp folder has the python code to post-process the raw data.
DOI: 10.5281/zenodo.4552852
title: Dataset for paper "the role of ocean-atmosphere interactions in atmospheric river events: simulations from a coupled model"

description: Here is the post-processed data from the coupled simulation results. save_correct folder has all the data. plot_stat folder has the scripts to plot the figures in the paper. temp folder has the python code to post-process the raw data.
DOI: 10.5281/zenodo.5899908
title: RAPPRESENTAZIONE TRATTI

description: Dataset with the values observed by citizens
DOI: 10.5281/zenodo.5899907
title: RAPPRESENTAZIONE TRATTI

description: Dataset with the values observed by citizens
DOI: 10.5281/zenodo.5899938
title: Dataset for "Impact of downward longwave radiative deficits on Antarctic sea-ice extent predictability for subseasonal time scales"

description: Dataset for "Impact of downward longwave radiative deficits on Antarctic sea-ice extent predictability for subseasonal time scales"
DOI: 10.5281/zenodo.5899937
title: Dataset for "Impact of downward longwave radiative deficits on Antarctic sea-ice extent predictability for subseasonal time scales"

description: Dataset for "Impact of downward longwave radiative deficits on Antarctic sea-ice extent predictability for subseasonal time scales"
DOI: 10.5519/qd.8duocci2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (87 records)
DOI: 10.6084/m9.figshare.19028906
title: Additional file 2 of Differential effects of radiation fractionation regimens on glioblastoma

description: Additional file 2. Table S2: Fluorescent band intensity for western blots.
DOI: 10.6084/m9.figshare.19028906.v1
title: Additional file 2 of Differential effects of radiation fractionation regimens on glioblastoma

description: Additional file 2. Table S2: Fluorescent band intensity for western blots.
DOI: 10.6084/m9.figshare.18070588
title: Additional file 10 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 10: Table S9. Consolidated Epigenomics Roadmap H3K9me3 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070588.v1
title: Additional file 10 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 10: Table S9. Consolidated Epigenomics Roadmap H3K9me3 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070591
title: Additional file 11 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 11: Table S10. Consolidated Epigenomics Roadmap HMM Chromatin State (15-state model) FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070591.v1
title: Additional file 11 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 11: Table S10. Consolidated Epigenomics Roadmap HMM Chromatin State (15-state model) FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070594
title: Additional file 12 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 12: Table S11. FORGE2 histone mark broadPeak analysis results (q-values, combined H3K4me1, H3K4me3, H3K9me3, H3K36me3, and H3K27me3) for a set of 25 variants from a GWAS on myeloproliferative neoplasms.
DOI: 10.6084/m9.figshare.18070594.v1
title: Additional file 12 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 12: Table S11. FORGE2 histone mark broadPeak analysis results (q-values, combined H3K4me1, H3K4me3, H3K9me3, H3K36me3, and H3K27me3) for a set of 25 variants from a GWAS on myeloproliferative neoplasms.
DOI: 10.6084/m9.figshare.18070597
title: Additional file 13 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 13: Table S12. FORGE2 DNase I hotspot analysis results (q-values) for a set of 25 variants from a GWAS on myeloproliferative neoplasms.
DOI: 10.6084/m9.figshare.18070609.v1
title: Additional file 2 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 2: Table S1. Consolidated Epigenomics Roadmap DNase I hotspot FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070612
title: Additional file 3 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 3: Table S2. Unconsolidated (2012) Epigenomics Roadmap DNase I hotspot FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070612.v1
title: Additional file 3 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 3: Table S2. Unconsolidated (2012) Epigenomics Roadmap DNase I hotspot FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070609
title: Additional file 2 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 2: Table S1. Consolidated Epigenomics Roadmap DNase I hotspot FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070615
title: Additional file 4 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 4: Table S3. ENCODE DNase I hotspot FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070615.v1
title: Additional file 4 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 4: Table S3. ENCODE DNase I hotspot FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070618
title: Additional file 5 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 5: Table S4. BLUEPRINT DNase I hotspot FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070621
title: Additional file 6 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 6: Table S5. Consolidated Epigenomics Roadmap H3K4me1 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070618.v1
title: Additional file 5 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 5: Table S4. BLUEPRINT DNase I hotspot FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070621.v1
title: Additional file 6 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 6: Table S5. Consolidated Epigenomics Roadmap H3K4me1 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070624
title: Additional file 7 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 7: Table S6. Consolidated Epigenomics Roadmap H3K4me3 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070624.v1
title: Additional file 7 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 7: Table S6. Consolidated Epigenomics Roadmap H3K4me3 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070627
title: Additional file 8 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 8: Table S7. Consolidated Epigenomics Roadmap H3K36me3 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070627.v1
title: Additional file 8 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 8: Table S7. Consolidated Epigenomics Roadmap H3K36me3 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070630.v1
title: Additional file 9 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 9: Table S8. Consolidated Epigenomics Roadmap H3K27me3 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.18070630
title: Additional file 9 of Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

description: Additional file 9: Table S8. Consolidated Epigenomics Roadmap H3K27me3 FORGE2 GWAS catalogue analysis results (q-values).
DOI: 10.6084/m9.figshare.19028960
title: Additional file 2 of Social life-cycle assessment (S-LCA) of residential rooftop solar panels using challenge-derived framework

description: Additional file 2. S-LCA Impact Analysis of Solar Panels.
DOI: 10.6084/m9.figshare.19028960.v1
title: Additional file 2 of Social life-cycle assessment (S-LCA) of residential rooftop solar panels using challenge-derived framework

description: Additional file 2. S-LCA Impact Analysis of Solar Panels.
DOI: 10.5281/zenodo.5900050
title: ZB Dataset 1

description: ZB Dataset 1