cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vvkagh
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((101.094 5.342149, 101.023433 5.336578, 100.954607 5.320004, 100.889221 5.292836, 100.828886 5.255743, 100.775091 5.209641, 100.729159 5.155666, 100.692221 5.09515, 100.665186 5.029584, 100.648716 4.960583, 100.643213 4.889848, 100.648809 4.819121, 100.665364 4.750141, 100.692466 4.684608, 100.729446 4.624133, 100.775393 4.570205, 100.829174 4.524149, 100.889466 4.487097, 100.954785 4.459961, 101.023527 4.443409, 101.094 4.437845, 101.164473 4.443409, 101.233215 4.459961, 101.298534 4.487097, 101.358826 4.524149, 101.412607 4.570205, 101.458554 4.624133, 101.495534 4.684608, 101.522636 4.750141, 101.539191 4.819121, 101.544787 4.889848, 101.539284 4.960583, 101.522814 5.029584, 101.495779 5.09515, 101.458841 5.155666, 101.412909 5.209641, 101.359114 5.255743, 101.298779 5.292836, 101.233393 5.320004, 101.164567 5.336578, 101.094 5.342149))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 83 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001805-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agehh7
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "TaxonKey is Bergenia pacumbis"
 ]
}

 The dataset includes 79 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001806-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18323105
title: Spilanthes bellidioides (Sm.) Cabrera. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:55
DOI: 10.5281/zenodo.18323106
title: Spilanthes bellidioides (Sm.) Cabrera. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:55
DOI: 10.15468/9edap5
title: Redescriptions of Indian species of Nigrobaetis Kazlauskas (in Novikova & Kluge) 1987 (Ephemeroptera, Baetidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kluge, Nikita, Sivaruban, T., Srinivasan, Pandiarajan, Barathy, S., Isack, Rajasekaran (2024): Redescriptions of Indian species of Nigrobaetis Kazlauskas (in Novikova & Kluge) 1987 (Ephemeroptera, Baetidae). Zootaxa 5418 (5): 528-550, DOI: 10.11646/zootaxa.5418.5.5, URL: http://dx.doi.org/10.11646/zootaxa.5418.5.5AbstractThe European species Nigrobaetis gracilis (Bogoescu & Tabacaru 1957) and more than 19 Asian and African species of Nigrobaetis Kazlauskas (in Novikova & Kluge) 1987 belong to the subgenus Margobaetis Kang & Yang 1994, which is characterized by peculiar asymmetric eggs and narrow paraglossa of larval labium. A new synonymy is established: Nigrobaetis (Margobaetis) minutus (Müller-Liebenau 1984) = N. paramakalyani Kubendran & Balasubramanian in Kubendran et al. 2015 = N. sumbensis Kaltenbach & Gattolliat 2023, synn. n.; winged stages (male and female imagines and subimagines) and eggs of this species are described for the first time. N. (M.) minutus is widely distributed on Oriental Region, being revealed in West Malaysia, Southern India, Sumba and Sulawesi islands in Indonesia. Winged stages (male and female imagines and subimagines) and eggs of Nigrobaetis (Margobaetis) klugei Sivaruban et al. 2022 are described for the first time.
DOI: 10.5281/zenodo.18323107
title: Triteleia sellowiana Kunth. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.5281/zenodo.18323108
title: Triteleia sellowiana Kunth. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.5281/zenodo.18323098
title: O'ZBEKISTONDA MILLATLARARO MUNOSABATLARNING HUQUQIY ASOSLARI

description: Maqolada O‘zbekiston Respublikasida millatlararo totuvlikni ta'minlashning huquqiy asoslari tahsil qilinadi. Mustaqillik yillarida amalga oshirilgan islohotlar, qonunchilik bazasi va amaliy chora-tadbirlar tahlil qilinadi.
DOI: 10.5281/zenodo.18323099
title: O'ZBEKISTONDA MILLATLARARO MUNOSABATLARNING HUQUQIY ASOSLARI

description: Maqolada O‘zbekiston Respublikasida millatlararo totuvlikni ta'minlashning huquqiy asoslari tahsil qilinadi. Mustaqillik yillarida amalga oshirilgan islohotlar, qonunchilik bazasi va amaliy chora-tadbirlar tahlil qilinadi.
DOI: 10.15468/dl.q4npu4
title: Occurrence Download

description: A dataset containing 1587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((23.60945 48.54426,23.7563 48.54426,23.7563 48.65217,23.60945 48.65217,23.60945 48.54426))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1587 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001807-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18323117
title: Spartium junceum L. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:55
DOI: 10.5281/zenodo.18323118
title: Spartium junceum L. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:55
DOI: 10.15468/dl.m8he5t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((99.092 1.122184, 99.02172400000001 1.116616, 98.95317900000001 1.10005, 98.888053 1.072893, 98.827951 1.035816, 98.77435199999999 0.98973, 98.728577 0.935772, 98.69175199999999 0.875269, 98.664784 0.809712, 98.648336 0.740716, 98.64281200000001 0.669979, 98.648348 0.599243, 98.66480799999999 0.53025, 98.691785 0.464698, 98.728616 0.404201, 98.774393 0.350249, 98.82799 0.304169, 98.888086 0.267097, 98.953203 0.239945, 99.021736 0.223382, 99.092 0.217816, 99.16226399999999 0.223382, 99.230797 0.239945, 99.295914 0.267097, 99.35601 0.304169, 99.40960699999999 0.350249, 99.455384 0.404201, 99.492215 0.464698, 99.519192 0.53025, 99.535652 0.599243, 99.54118800000001 0.669979, 99.535664 0.740716, 99.519216 0.809712, 99.492248 0.875269, 99.455423 0.935772, 99.409648 0.98973, 99.356049 1.035816, 99.295947 1.072893, 99.23082100000001 1.10005, 99.16227600000001 1.116616, 99.092 1.122184))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001809-260120142942310/datasets/export for details.
DOI: 10.5281/zenodo.18323125
title: Viscum verticillatum L. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.5281/zenodo.18323126
title: Viscum verticillatum L. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:56
DOI: 10.15468/dl.3n7j2k
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-3.60803 36.50745,-0.72633 36.50745,-0.72633 38.35998,-3.60803 38.35998,-3.60803 36.50745))",
 "TaxonKey is Pisolithus"
 ]
}

 The dataset includes 68 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001810-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phmk7c
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elodes kojimai",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001813-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cp5vcv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((116.47 5.353148, 116.399432 5.347578, 116.330605 5.331004, 116.265217 5.303835, 116.204882 5.266742, 116.151085 5.22064, 116.105153 5.166666, 116.068215 5.10615, 116.041179 5.040583, 116.024708 4.971583, 116.019205 4.900848, 116.024802 4.83012, 116.041357 4.761141, 116.06846 4.695608, 116.105441 4.635133, 116.151388 4.581205, 116.20517 4.535149, 116.265463 4.498097, 116.330783 4.470962, 116.399526 4.454409, 116.47 4.448845, 116.540474 4.454409, 116.609217 4.470962, 116.674537 4.498097, 116.73483 4.535149, 116.788612 4.581205, 116.834559 4.635133, 116.87154 4.695608, 116.898643 4.761141, 116.915198 4.83012, 116.920795 4.900848, 116.915292 4.971583, 116.898821 5.040583, 116.871785 5.10615, 116.834847 5.166666, 116.788915 5.22064, 116.735118 5.266742, 116.674783 5.303835, 116.609395 5.331004, 116.540568 5.347578, 116.47 5.353148))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001814-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31108960
title: Supplementary Material for: Perioperative and Periinterventional Antibiotic Prophylaxis in Urology: Key Recommendations from the German Interdisciplinary AWMF S3 Clinical Practice Guideline

description: Perioperative and periinterventional antibiotic prophylaxis remains fundamental to infection prevention in surgical and interventional urology, yet its overuse and unjustified prolongation continue to drive antimicrobial resistance and expose patients to avoidable harm. The newly finalized German interdisciplinary AWMF S3 Clinical Practice Guideline establishes an evidence-based, risk-adapted, and stewardship-oriented framework that redefines antibiotic prophylaxis as a rigorously justified and time-limited intervention. This manuscript distills the urology-specific recommendations and contrasts them with the 2025 EAU Guidelines on Urological Infections, emphasizing alignment, procedural nuance, and practical relevance. The AWMF S3 framework mandates strict indication, intravenous administration 30 to 60 minutes before incision, single-dose prophylaxis for most clean and clean-contaminated procedures, and redosing only when pharmacokinetically warranted, with discontinuation at wound closure as a universal standard. Within urology, resistance-adapted prophylaxis with rectal antisepsis is recommended for transrectal prostate biopsy, whereas transperineal biopsy may be safely performed without antibiotics in low-risk patients with sterile urine and proper antisepsis. Prophylaxis confers no consistent benefit for ureterorenoscopy or cystoscopy in sterile urine, but remains indicated for percutaneous nephrolithotomy, transurethral resection of the prostate, and major open or laparoscopic procedures such as radical prostatectomy and cystectomy, where broad-spectrum single-dose coverage with intraoperative redosing may be required in prolonged surgery. Across all procedures, the AWMF S3 and EAU 2025 recommendations show high concordance, differing primarily in granularity and evidence grading. A risk-adapted, single-dose strategy unites patient safety with antimicrobial stewardship and positions urology as a model discipline for rational, quality-assured infection prevention in modern surgery.
DOI: 10.6084/m9.figshare.31108960.v1
title: Supplementary Material for: Perioperative and Periinterventional Antibiotic Prophylaxis in Urology: Key Recommendations from the German Interdisciplinary AWMF S3 Clinical Practice Guideline

description: Perioperative and periinterventional antibiotic prophylaxis remains fundamental to infection prevention in surgical and interventional urology, yet its overuse and unjustified prolongation continue to drive antimicrobial resistance and expose patients to avoidable harm. The newly finalized German interdisciplinary AWMF S3 Clinical Practice Guideline establishes an evidence-based, risk-adapted, and stewardship-oriented framework that redefines antibiotic prophylaxis as a rigorously justified and time-limited intervention. This manuscript distills the urology-specific recommendations and contrasts them with the 2025 EAU Guidelines on Urological Infections, emphasizing alignment, procedural nuance, and practical relevance. The AWMF S3 framework mandates strict indication, intravenous administration 30 to 60 minutes before incision, single-dose prophylaxis for most clean and clean-contaminated procedures, and redosing only when pharmacokinetically warranted, with discontinuation at wound closure as a universal standard. Within urology, resistance-adapted prophylaxis with rectal antisepsis is recommended for transrectal prostate biopsy, whereas transperineal biopsy may be safely performed without antibiotics in low-risk patients with sterile urine and proper antisepsis. Prophylaxis confers no consistent benefit for ureterorenoscopy or cystoscopy in sterile urine, but remains indicated for percutaneous nephrolithotomy, transurethral resection of the prostate, and major open or laparoscopic procedures such as radical prostatectomy and cystectomy, where broad-spectrum single-dose coverage with intraoperative redosing may be required in prolonged surgery. Across all procedures, the AWMF S3 and EAU 2025 recommendations show high concordance, differing primarily in granularity and evidence grading. A risk-adapted, single-dose strategy unites patient safety with antimicrobial stewardship and positions urology as a model discipline for rational, quality-assured infection prevention in modern surgery.
DOI: 10.6084/m9.figshare.31108963
title: Supplementary Material for: Establishing an EPA-based curriculum for postgraduate respiratory medicine training: a national consensus process

description: Introduction
Postgraduate training in adult respiratory medicine in Switzerland has traditionally relied on fixed training times and procedural numbers. In line with Competency-Based Medical Education (CBME), the Swiss Society of Pneumology (SGP/SSP) initiated the development of an Entrustable Professional Activities (EPA)-based curriculum to better align training with clinical practice and outcomes.

Methods
In 2023, the SGP Postgraduate Training Commission formed a multidisciplinary working group representing all Swiss linguistic regions and training centre types. Through a structured consensus process - including literature review, iterative consensus meetings using a modified Delphi process, and coaching by the Swiss Institute for Medical Education (SIME/SIWF/ISFM) - a national EPA list was created. All EPAs have been elaborated using the EQual rubric as a quality standard. Final approval was granted by the SGP and SIME in 2025.

Discussion
The novel EPA-based curriculum represents a shift from time- and numbers-based requirements to competency-oriented postgraduate education in adult respiratory medicine. We describe the development process, conceptual framework, and key lessons learned. By integrating programmatic assessment and EPAs with frequent workplace-based assessments it aims to enhance feedback culture, entrustment decisions, and individualized learning, providing a model for other national training programs and specialties adopting CBME.
DOI: 10.6084/m9.figshare.31108963.v1
title: Supplementary Material for: Establishing an EPA-based curriculum for postgraduate respiratory medicine training: a national consensus process

description: Introduction
Postgraduate training in adult respiratory medicine in Switzerland has traditionally relied on fixed training times and procedural numbers. In line with Competency-Based Medical Education (CBME), the Swiss Society of Pneumology (SGP/SSP) initiated the development of an Entrustable Professional Activities (EPA)-based curriculum to better align training with clinical practice and outcomes.

Methods
In 2023, the SGP Postgraduate Training Commission formed a multidisciplinary working group representing all Swiss linguistic regions and training centre types. Through a structured consensus process - including literature review, iterative consensus meetings using a modified Delphi process, and coaching by the Swiss Institute for Medical Education (SIME/SIWF/ISFM) - a national EPA list was created. All EPAs have been elaborated using the EQual rubric as a quality standard. Final approval was granted by the SGP and SIME in 2025.

Discussion
The novel EPA-based curriculum represents a shift from time- and numbers-based requirements to competency-oriented postgraduate education in adult respiratory medicine. We describe the development process, conceptual framework, and key lessons learned. By integrating programmatic assessment and EPAs with frequent workplace-based assessments it aims to enhance feedback culture, entrustment decisions, and individualized learning, providing a model for other national training programs and specialties adopting CBME.
DOI: 10.6084/m9.figshare.31108966
title: Supplementary Material for: Inhibition of Pseudomonas aeruginosa biofilm formation by peptidyl-arginine deiminases 2 and 4

description: Pseudomonas aeruginosa (P. aeruginosa) is a significant pathogen associated with chronic infections, particularly in immunocompromised individuals. Its ability to form biofilms, combined with antibiotic resistance, plays a critical role in the persistence of these infections. Peptidyl-arginine deiminases (PADs), including PAD2 and PAD4 isoforms, are involved in neutrophil phagocytic killing of P. aeruginosa. The aim of this study was to investigate the impact of PAD enzymes on biofilm development and virulence factor production by P. aeruginosa, with focus on the multidrug resistant strain, PGO2330. Crystal-violet biofilm assays and confocal scanning laser microscopy were employed to assess the effects of PADs on biofilm formation. Cell motility assays, qPCR for quorum sensing (QS) gene expression and QS-related virulence factor assays were performed. This study reports that 20 nM of PAD2 and PAD4 reduced PGO2330 biofilm formation to 67.9±5.6% (p=0.0002) and 68.2±4.2% (p=0.0002), respectively. This effect was likely due to PAD2 and PAD4 reducing PGO2330 surface attachment (p&lt;0.0001) and twitching motility (p&lt;0.0001 and p=0.0190, respectively). PGO2330 exposed to PAD2 and PAD4 showed reduced lasR, lasI, rhlR, rhll and mvrf gene expression and reduced levels of extracellular DNA, rhamnolipid, pyocyanin and protease activity. Overall, the results revealed that in addition to inhibiting P. aeruginosa biofilm formation, PADs decrease the production of QS-related virulence factors, advancing knowledge of the antimicrobial properties of PAD enzymes and supporting further research into the development of PAD-based therapeutics.
DOI: 10.6084/m9.figshare.31108966.v1
title: Supplementary Material for: Inhibition of Pseudomonas aeruginosa biofilm formation by peptidyl-arginine deiminases 2 and 4

description: Pseudomonas aeruginosa (P. aeruginosa) is a significant pathogen associated with chronic infections, particularly in immunocompromised individuals. Its ability to form biofilms, combined with antibiotic resistance, plays a critical role in the persistence of these infections. Peptidyl-arginine deiminases (PADs), including PAD2 and PAD4 isoforms, are involved in neutrophil phagocytic killing of P. aeruginosa. The aim of this study was to investigate the impact of PAD enzymes on biofilm development and virulence factor production by P. aeruginosa, with focus on the multidrug resistant strain, PGO2330. Crystal-violet biofilm assays and confocal scanning laser microscopy were employed to assess the effects of PADs on biofilm formation. Cell motility assays, qPCR for quorum sensing (QS) gene expression and QS-related virulence factor assays were performed. This study reports that 20 nM of PAD2 and PAD4 reduced PGO2330 biofilm formation to 67.9±5.6% (p=0.0002) and 68.2±4.2% (p=0.0002), respectively. This effect was likely due to PAD2 and PAD4 reducing PGO2330 surface attachment (p&lt;0.0001) and twitching motility (p&lt;0.0001 and p=0.0190, respectively). PGO2330 exposed to PAD2 and PAD4 showed reduced lasR, lasI, rhlR, rhll and mvrf gene expression and reduced levels of extracellular DNA, rhamnolipid, pyocyanin and protease activity. Overall, the results revealed that in addition to inhibiting P. aeruginosa biofilm formation, PADs decrease the production of QS-related virulence factors, advancing knowledge of the antimicrobial properties of PAD enzymes and supporting further research into the development of PAD-based therapeutics.