cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25504/fairsharing.cnwx8c
title: FAIRsharing record for: UNITE
title: null

description: This FAIRsharing record describes:  UNITE is a database and sequence management environment centered on the eukaryotic nuclear ribosomal ITS region. All eukaryotic ITS sequences from the International Nucleotide Sequence Database Collaboration are clustered to approximately the species level (distance between species in steps of 0.5%), and all such species hypotheses are given a DOI to facilitate unambiguous scientific communication and data assembly. The user can interact with these species hypotheses (e.g., SH1566366.08FU) in various ways, and third-party sequence and metadata annotation are supported. Registration is needed to access the more powerful features of the accompanying PlutoF workbench. A range of search and query options are available, and precompiled reference datasets for local sequence similarity searches and HTS pipelines are available for download. Owing to the mycological roots of UNITE, two versions of the release files are available: all eukaryotes (including fungi), and fungi only. UNITE is a community effort that relies on the scientific expertise of its users – please consider contributing by, e.g., annotating sequences of your taxa of expertise.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.k56rjs
title: FAIRsharing record for: Interologous Interaction Database
title: I2D

description: This FAIRsharing record describes:  The I2D (Interologous Interaction Database) is a database of known and predicted mammalian and eukaryotic protein-protein interactions (PPIs). It has been built by mapping high-throughput (HTP) data between species.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.mx5cxe
title: FAIRsharing record for: Bacterial Protein Interaction Database
title: Bacteriome.org

description: This FAIRsharing record describes:  Bacteriome.org is a database integrating physical (protein-protein) and functional interactions within the context of an E. coli knowledgebase.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.2mayq0
title: FAIRsharing record for: Structural and functional annotation of Arabidopsis thaliana gene and protein families
title: GeneFarm

description: This FAIRsharing record describes:  GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.anpa6
title: FAIRsharing record for: A Systematic Annotation Package
title: ASAP

description: This FAIRsharing record describes:  ASAP is a relational database and web interface developed to store, update and distribute genome sequence data and gene expression data. It was designed to facilitate ongoing community annotation of genomes and to grow with genome projects as they move from the preliminary data stage through post-sequencing functional analysis.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.p06nme
title: FAIRsharing record for: Biological Magnetic Resonance Data Bank
title: BMRB

description: This FAIRsharing record describes:  BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. Its goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.3etvdn
title: FAIRsharing record for: VectorBase
title: VectorBase

description: This FAIRsharing record describes:  VectorBase is a web-accessible data repository for information about invertebrate vectors of human pathogens. VectorBase annotates and maintains vector genomes (as well as a number of non-vector genomes for comparative analysis) providing an integrated resource for the research community. VectorBase contains genome information for organisms such as Anopheles gambiae, a vector for the Plasmodium protozoan agent causing malaria, and Aedes aegypti, a vector for the flaviviral agents causing Yellow fever and Dengue fever. Hosted data range from genome assemblies with annotated gene features, transcript and protein expression data to population genetics including variation and insecticide-resistance phenotypes.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.bn6jba
title: FAIRsharing record for: Poxvirus Bioinformatics Resource Center
title: null

description: This FAIRsharing record describes:  Poxvirus Bioinformatics Resource Center has been established to provide specialized web-based resources to the scientific community studying poxviruses. This resource is no longer being maintained. For tools and data supporting virus genomics, especially related to poxviruses and other large DNA viruses, please visit the Viral Bioinformatics site maintained by our collaborator, Chris Upton: http://virology.ca For information on virus taxonomy, please visit the ICTV web site at http://www.ictvonline.org/ For updated sequence data and analytical tools, please visit http://www.viprbrc.org
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.5281/zenodo.13986858
title: Preparedness in Educational Policy Implementation

description: Analysed SPSS dataset exploring instituional and individual preparedness for teachers to implement a new educational policy. The variables include the Level of Teacher Training which in this study, constitutes training on lesson planning, training on learner assessment, and training to classroom management. another variable is Teachers’ Perceptions where the teachers’ view on the workload associated with CBA and their perception  on the overall feasibility and practicality of CBA is explored. Institutional Preparedness is a variable on Teaching and learning resources recommended by the approach, whether there are supportive staff members,  and whether there is an enabling environment for performance-based learning. Implementation of CBA explores the number of  CBA-integrated lessons, Lesson plans with CBA aspects, and Improvement on student teacher-ratio.
DOI: 10.25504/fairsharing.6v96ma
title: FAIRsharing record for: Genome Database for Rosaceae
title: GDR

description: This FAIRsharing record describes:  The Genome Database for Rosaceae (GDR) is a curated and integrated web-based relational database providing centralized access to Rosaceae genomics and genetics data and analysis tools to facilitate basic, translational and applied research in Rosaceae.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.nvmk6r
title: FAIRsharing record for: Phosphorylation Site Database
title: PSD

description: This FAIRsharing record describes:  The Phosphorylation Site Database provides ready access to information from the primary scientific literature concerning proteins in prokaryotic organisms (i.e. members of the domains Archaea and Bacteria) that undergo covalent phosphorylation on the hydroxyl side chains of serine, threonine, and/or tyrosine residues
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.5281/zenodo.13986857
title: Preparedness in Educational Policy Implementation

description: Analysed SPSS dataset exploring instituional and individual preparedness for teachers to implement a new educational policy. The variables include the Level of Teacher Training which in this study, constitutes training on lesson planning, training on learner assessment, and training to classroom management. another variable is Teachers’ Perceptions where the teachers’ view on the workload associated with CBA and their perception  on the overall feasibility and practicality of CBA is explored. Institutional Preparedness is a variable on Teaching and learning resources recommended by the approach, whether there are supportive staff members,  and whether there is an enabling environment for performance-based learning. Implementation of CBA explores the number of  CBA-integrated lessons, Lesson plans with CBA aspects, and Improvement on student teacher-ratio.
DOI: 10.15468/dl.tdv6yz
title: Occurrence Download

description: A dataset containing 27552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)",
 "Year 2024-2024"
 ]
}

 The dataset includes 27552 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020639-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25504/fairsharing.g7jbvn
title: FAIRsharing record for: Human Gene Database
title: GeneCards

description: This FAIRsharing record describes:  GeneCards is a searchable, integrated, database of human genes that provides concise genomic, transcriptomic, genetic, proteomic, functional and disease related information on all known and predicted human genes.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.karvzj
title: FAIRsharing record for: Yeast Resource Center Public Data Repository
title: YRC PDR

description: This FAIRsharing record describes:  The National Center for Research Resources' Yeast Resource Center is located at the University of Washington in Seattle, Washington. The mission of the center is to facilitate the identification and characterization of protein complexes in the yeast Saccharomyces cerevisiae.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.qrv60a
title: FAIRsharing record for: Saccharomyces cerevisiae Transcription Factor Database
title: ScerTF

description: This FAIRsharing record describes:  ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.6375zh
title: FAIRsharing record for: Olfactory Receptor Database
title: ORDB

description: This FAIRsharing record describes:  ORDB began as a database of vertebrate OR genes and proteins and continues to support sequencing and analysis of these receptors by providing a comprehensive archive with search tools for this expanding family.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.rcbwsf
title: FAIRsharing record for: Giga Science Database
title: GigaDB

description: This FAIRsharing record describes:  GigaDB primarily serves as a repository to host data and tools associated with articles in GigaScience; however, it also includes a subset of datasets that are not associated with GigaScience articles. GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support an article or study.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.t19hpa
title: FAIRsharing record for: Integrated Taxonomic Information System
title: ITIS

description: This FAIRsharing record describes:  The Integrated Taxonomic Information System (ITIS) provides taxonomic information on plants, animals, fungi, and microbes of North America and the world. The goal is to create an easily accessible database with reliable information on species names and their hierarchical classification. The database will be reviewed periodically to ensure high quality with valid classifications, revisions, and additions of newly described species. The ITIS includes documented taxonomic information of flora and fauna from both aquatic and terrestrial habitats.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.651n9j
title: FAIRsharing record for: Electron Microscopy Data Bank
title: EMDB

description: This FAIRsharing record describes:  Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB was founded at EBI in 2002, under the leadership of Kim Henrick. Since 2007 it has been operated jointly by the PDBe, and the Research Collaboratory for Structural Bioinformatics (RCSB PDB) as a part of EMDataBank which is funded by a joint NIH grant to PDBe, the RCSB and the National Center for Macromolecular Imaging (NCMI).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.8fy3bn
title: FAIRsharing record for: The mitochondrial DNA breakpoints database
title: MitoBreak

description: This FAIRsharing record describes:  A comprehensive on-line resource with curated datasets of mitochondrial DNA (mtDNA) rearrangements.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.92dt9d
title: FAIRsharing record for: ProteomeXchange
title: ProteomeXchange

description: This FAIRsharing record describes:  The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.cr410r
title: FAIRsharing record for: Soybean Knowledge Base
title: SoyKB

description: This FAIRsharing record describes:  Soybean Knowledge Base (SoyKB), is a comprehensive all-inclusive web resource developed for soybean translational genomics and molecular breeding. SoyKB stores information about genes/proteins, miRNAs/sRNAs, metabolites, SNPs, plant introduction (PI lines) and traits. It handles the management and integration of soybean genomics and multi-omics data along with gene function annotations, biological pathway and trait information. It has many useful tools including gene family search, multiple gene/metabolite analysis, motif analysis tool, protein 3D structure viewer and data download and upload capacity. It has a user-friendly web interface together with genome browser and pathway viewer, which displays data in an intuitive manner to the soybean researchers, breeders and consumers. The QTLs, SNP, GWAS and traits information is seamlessly integrated in our newly developed suite of tools for the In Silico Breeding Program. It allows integration and extraction of the data in a tabular format as well as graphical visualization in our in-house Chromosome Visualizer. It also supports integration and visualization of Genotype by Sequencing (GBS) data for molecular breeding and phenotypic inferences. In addition, SoyKB now has capacity for incorporation of DNA methylation data and fast neutron mutation datasets. It is also linked seamlessly with P3DB for phosphorylation data. We have also incorporated suite of tools for differential expression analysis for microarray, transcriptomics RNA-seq, proteomics and metabolomics datasets. It includes access to gene lists, Venn diagrams, Volcano plots, functional annotations and pathway analysis. SoyKB is now powered by the iPlant Cyber-Infrastructure. The website is hosted on the iPlant’s advanced computing infrastructure established to leverage the data analysis capabilities.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.dxj07r
title: FAIRsharing record for: MGnify
title: MGnify

description: This FAIRsharing record describes:  EBI Metagenomics has changed its name to MGnify to reflect a change in scope. This is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. You can freely browse all the public data in the repository.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.7k8zh0
title: FAIRsharing record for: Plant Promoter Database
title: ppdb

description: This FAIRsharing record describes:  Genome-wide plant promoter database for several plant species, including Arabidopsis thaliana, rice, poplar, and Physcomitrella patens.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.9vyk3d
title: FAIRsharing record for: JCB DataViewer
title: JCB DataViewer

description: This FAIRsharing record describes:  The JCB DataViewer is an image hosting and visualization platform for original microscopy image datasets associated with articles published in The Journal of Cell Biology, a peer-reviewed journal published by The Rockefeller University Press. The JCB DataViewer can host multidimensional fluorescence microscopy images, 3D tomogram data, very large (gigapixel) images, and high content imaging screens. Images are presented in an interactive viewer, and the "scores" from high content screens are presented in interactive graphs with data points linked to the relevant images. The JCB DataViewer uses the Bio-Formats library to read over 120 different imaging file formats and convert them to the OME-TIFF image data standard.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.