cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28960910.v1
title: Supplementary Figure 1

description: <b>Supplementary Fig. 1. </b>The heatmap and unsupervised hierarchical clustering show the gene expression profile of selected exercise-modulated acute lung injury (ALI) response genes in <b>(A)</b> tibialis anterior (28 genes) and <b>(B)</b> diaphragm (36 genes) skeletal muscle in mice instilled intratracheally with water (Sham, N=3), lipopolysaccharides to induce ALI (N=4), and ALI + exercise (N=4) condition. We performed the unsupervised hierarchical clustering for differentially expressed genes using PermutMatrix software (https://www.atgc-montpellier.fr/permutmatrix/). Euclidian distance matrix between samples was generated using z-score normalized expression values for each differentially expressed transcript and seriation under multiple fragment heuristics. The hierarchical clustering-based tree and heat map were generated using McQuitty’s criteria.
DOI: 10.6084/m9.figshare.5114086.v3
title: Quercus suber chorology

description: Distribution map of cork oak (<i>Quercus suber</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.17632/hxwny6ggc6
title: Cognitive follow-up six and nine months after intervention with NeuroEPO in Cuban Parkison's patients

description: The study was part of a randomized double-blind physician-lead placebo-controlled trial to evaluate the safety of NeuroEPO in Parkinson’s Disease patients (https://clinicaltrials.gov/ number NCT04110678) with motor and cognitive secondary outcomes measures. The sample was composed of twenty-six patients (10 women) with a clinical diagnosis of idiopathic Parkinson’s disease according to the UK Brain Bank Criteria. The average age was 53.88 years (SD=7.66) and the duration of disease was 5.5 years (SD=3.49). The patients were in stage Ⅰ-Ⅱ of Hoehn and Yahr. The NeuroEPO group included fifteen patients (7 women) who received a weekly 1mL dose of intranasal NeuroEPO for 5 weeks and the placebo group included eleven patients (3 women) who received a similar formulation containing the same ingredients except for EPO. Six months after the safety trial finished, 10 patients from the EPO group and 8 patients from the original placebo group received 9 months of intensive NeuroEPO treatment, with 1mL bulb, 3 times per week, for one month (induction phase) and later 1/2 bulb three times per week, for eight months. To evaluate the motor symptoms the Unified Parkinson Disease Rating Scale (UPDRS) motor section was used. For evaluation of cognition the neuropsychological battery included the Mini Mental State Examination, Dementia Rating Scale (global cognitive functioning), the Rey Auditory Verbal Learning test (episodic verbal memory), the Working Memory Index from WAIS Ⅲ (working memory) and the Rey Complex Figure, copy and delayed recall/reproduction of the copy (visuospatial ability and non-verbal memory), Delis-Kaplan verbal fluency, Trail-Making, and the Stroop color word Interference test and the Frontal Assessment Battery were used to assess executive functions. Mood was assessed with the Hospital Anxiety Depression Scale (HADS). For the follow-up of the patients 9 months after the second intervention, a subset of the full battery was employed.
DOI: 10.17632/rzth4wtvfx
title: Dataset to determine the boil-up rate variation of pressure drop over the distillation Column

description: the data set entails the variation of boil-up rate of pressure drop on the power input in kW in armfield UOP CC 33,) for a different experimental run. As the velocity of the vapours passing the column increases then so does the overall pressure drop. The velocity was controlled by varying the boil-up rate which was done by varying the power input in the re boiler. Under condition with no liquid present, the sieve tray will be behave like an orifice in the pressure drop which will be proportional to the square of the velocity.
DOI: 10.6084/m9.figshare.20728327.v1
title: Data from "Breakdown of Nernst-Einstein Relation in Carbon Nanotube Porins"

description: Full dataset from the manuscript, including data from all main text, extended data, and supplementary materials sections. <br> Abstract: For over 100 years, the Nernst-Einstein relation has provided a universal link between a charged particle electrophoretic mobility and its diffusion coefficient. Here, we report experimental measurements of diffusive and electrophoretically-driven K<sup>+</sup> ion transport in narrow pores of 0.8 nm diameter single-wall carbon nanotubes (CNTs), which indicate that the Nernst-Einstein relation breaks down by over three orders of magnitude in these channels. To explain these findings, we carried out all-atomistic molecular dynamics simulations using polarizable force fields that showed that the K<sup>+</sup> ion diffusion in the narrow pore of the CNT in the presence of a single file water chain was at least three orders of magnitude slower than the K<sup>+</sup> ion diffusion in bulk solution. Intriguingly, the simulations also revealed a novel mechanism for electrophoretic transport of K<sup>+</sup> ions where the single file water chain disintegrated in the presence of applied electric fields, forming distinct ion-water clusters, which then traversed the CNT at significantly higher velocities. Finally, we demonstrate that although the individual ion-water clusters still obey the Nernst-Einstein relation, the overall relation breaks down because of two distinct ion transport mechanisms for concentration gradient-driven versus electric field-driven ion flows in these channels.
DOI: 10.6084/m9.figshare.7087415.v1
title: Supplementary Material for: Distinct Clinical Factors in Hospitalized Patients with Diverticular Bleeding and Diverticulitis

description: <b><i>Background/Aims:</i></b> It is unclear why colonic diverticular bleeding and diverticulitis rarely coexist. This study compared the characteristics of these conditions. <b><i>Methods:</i></b> This single-center retrospective study examined 310 consecutive patients hospitalized with an episode of diverticular disease (cases) and outpatients without a diverticular episode (controls) from January 2012 to December 2015. We investigated distinct clinical factors in hospitalized patients with diverticular bleeding and diverticulitis. <b><i>Results:</i></b> We identified 183 patients with 263 episodes of diverticular bleeding and 127 patients with 135 episodes of diverticulitis during the study period. Patients with diverticular bleeding were significantly older than those with diverticulitis (median age 76 vs. 56 years) and had more cardiovascular disease, hypertension, diabetes, cerebrovascular disease, chronic kidney disease, lipid disorder, or a poorer performance status. Significantly more diverticular bleeding patients were taking antiplatelet drugs, anticoagulant drugs, proton pump inhibitors, or laxative agents. Multivariate analysis revealed that an age &gt; 65 years (OR 5.42), and antiplatelet agent use (OR 7.29) were more significant risk factors for diverticular bleeding than for diverticulitis. <b><i>Conclusions:</i></b> Elderly people using antiplatelet drugs may be more susceptible to diverticular bleeding than diverticulitis.
DOI: 10.17632/5bc2wxtmh9
title: Leishmania infantum (JPCM5) gene models

description: This dataset informs of the gene models delineated in the Leishmania infantum (JPCM5) genome, which was de novo assembled by González-de-la Fuente et al (PMID: 29273719) in 2017. Since then, it has been incorporated into different databases: NCBI, ENA, UniProt, TriTrypDB, among others. The genome sequence may be downloaded from the Mendeley dataset: https://data.mendeley.com/datasets/rb34cg9xk7/1
Although the genome sequence remains the same, gene annotations have been improved by incorporating information derived from transcriptomics and proteomics studies and bibliographic sources in which particular genes/proteins were analyzed. The process following in updating the annotations has been described in the article by Camacho et al (2023. Leishmania infantum (JPCM5) Transcriptome, Gene Models and Resources for an Active Curation of Gene Annotations. Genes (Basel). 14, 866; PMID: 37107624).
This dataset includes two files. On one hand, a Fasta file with the sequences of all gene models (coding and non-coding) that have been annotated to date in the L. infantum genome. On the other hand, a gtf file containing information to locate all genes on the L. infantum genome (available at https://data.mendeley.com/datasets/rb34cg9xk7/1).
DOI: 10.17632/k56gj4j24v
title: Urban Sheds Enhancing Walkability through Green Sheltered Walkways in Del Pilar Street, Cabanatuan City

description: Urban sheds are envision as green corridors that include vegetation and landscaping components to 
produce a more aesthetically pleasing and environmentally friendly urban environment. Adding 
more green spaces not only makes the city look nicer, but it also helps cool down the area and clean 
the air. This research focuses on the urban enhancement of Cabanatuan City's walkable streets, 
suggesting the installation of green covered walkways on city streets. The goal of this study is to 
develop a network that connects main roads, parks, and suburbs, making walking a leisure activity. 
Through an in-depth review of case studies, design principles, and the repercussions on community 
well-being, the study aims to provide substantial information to urban planners, builders, and 
policymakers. The creation of urban sheds, as a multifaceted approach to urban development, not 
only addresses the practical need for heat relief but also promotes the shift toward sustainable and 
active modes of transportation. This research contributes to the discourse on urban design by 
presenting a concept of tangible solution for Del Pilar Street, Cabanatuan City unique climate 
challenges, emphasizing the potential ripple effects on public health, environmental sustainability, 
and overall urban vibrancy.
DOI: 10.6084/m9.figshare.28821995.v1
title: <b>Genetically predicted Ornithine Metabolites mediate the association between ODC1 Inhibition and Neuroblastoma.</b>

description: <br>DIFLUOROMETHYLORNITHINE (DFMO), as a drug that targets and inhibits ODC1 gene, has been proven to be effective for high-risk neuroblastoma (HR-NB) and has started clinical trials. The effects of DFMO on NB were still remain unclear. This study employed a drug-targeted Mendelian randomization (MR) approach to investigate the association between genetically predicted metabolites-modulating effects of commonly targeted ornithine decarboxylase-lowering agents and the risk of NB, with the aim of providing a theoretical foundation for the use of ornithine decarboxylase-lowering drugs in NB treatment.
DOI: 10.17632/ysbw5xrt8b
title: Data for: Design and in-house validation of a portable system for the determination of free acidity in virgin olive oil
DOI: 10.6084/m9.figshare.25256395.v1
title: Subterranean estuaries minimize groundwater nitrogen pollution impacts on coastal waters

description: Physic-chemical parameters in porewater, groundwater and seawater.
DOI: 10.17632/6jb4pbwchx
title: 火

description: Research on fire.
DOI: 10.17632/cx8cfgrhnn
title: Hydrogel Characterization Data

description: This dataset contains characterization results for two hydrogels: gelatin methacrylate (GelMA) and poly(ethylene glycol) diacrylate (PEGDA). Traditional mechanical tests, pulse-echo ultrasound, and rheology were performed on an array of samples. Hydrogel concentration is noted as % w/v and hydrogel curing time is noted in seconds. An overview of the data files is given below. 

GelMA_Characterization_Data.xlsx 
- Acoustic impedance calculations and values
- Attenuation coefficient values
- Bulk modulus calculations and values
- Density calculations and values
- Poisson's ratio calculations 
- Speed of sound values
- Viscosity values as a function of shear rate 
- Young's modulus values 

PEGDA_Characterization_Data.xlsx 
- Attenuation coefficient values
- Bulk modulus calculations and values
- Density calculations and values
- Speed of sound values
- Viscosity values as a function of shear rate 
- Young's modulus values 

The stress-strain values obtained from compression testing are provided in the folders "GelMA_CompressionFiles" and "PEGDA_CompressionFiles".
DOI: 10.25375/uct.11902077.v1
title: Dataset: Standard echocardiography versus handheld echocardiography for the detection of subclinical rheumatic heart disease: A systematic review and meta-analysis of diagnostic accuracy

description: Extracted data used for meta-analysis in the systematic review:<br><br>Standard echocardiography versus handheld echocardiography for the detection of subclinical rheumatic heart disease: A systematic review and meta-analysis of diagnostic accuracy<br><br>PROSPERO registration number: CRD42016051261<br><b></b>
DOI: 10.6084/m9.figshare.19394249.v1
title: Du-2011-drug degridation_for-repo_03142022.csv

description: File contains data and available metadata on medications that have been undergone stability testing in NASA-sponsored drug stability studies. These data were originally published by Du et al. 2011): 10.1208/s12248-011-9270-0
DOI: 10.17632/rwz59sxtpn
title: Synthetic student dataset on levels of use of digital tools and frequency of personal activities with ICTs

description: Dataset artificially generated through the Generative Adversarial Networks of students in postgraduate degrees at the University of La Laguna on levels of use of digital tools and frequency of personal activities with ICT.
DOI: 10.6084/m9.figshare.21362616.v1
title: Genomic mating using three-way crossbred pigs

description: The dataset was used for genomic mating on DLY three-way crossbred pigs.
DOI: 10.6084/m9.figshare.3385807.v1
title: Oxnard Aerial USGS Imagery from the Distributed Solar Photovoltaic Array Location and Extent Data Set

description: This collection of USGS Orthoimagery data contains the .tif images files and associated .xml metadata files for the Oxnard, CA imagery data from the dataset:<br>Bradbury, Kyle; Saboo, Raghav; Malof, Jordan; Johnson, Timothy; Devarajan, Arjun; Zhang, Wuming; Collins, Leslie; Newell, Richard: Distributed Solar Photovoltaic Array Location and Extent Data Set for Remote Sensing Object Identification. figshare. https://dx.doi.org/10.6084/m9.figshare.3385780<br>Acknowledgement: Data available from the U.S. Geological Survey. See USGS Visual Identity System Guidance (https://www2.usgs.gov/visual-id/credit_usgs.html) for further details.
DOI: 10.5522/04/29118212.v1
title: Benchmark dataset Turbulent Channel Flow for Chaos Meets Attention: Transformers for Large-Scale Dynamical Prediction

description: This dataset serves as a benchmark for 3D turbulent channel flows, based on simulations performed using a high-fidelity lattice Boltzmann method (LBM) solver, as described in Xue et al., Phys. Fluids, 34,5, 2022.It comprises 240 trajectories generated from 3D periodic turbulent channel flow simulations with a fixed relaxation time, $\tau = 0.5025$. We extract the central cross-section of the domain along the streamwise ($x$) direction with 3 coordinate components. The spatial resolution is $192 \times 192$, and the<b> friction Reynolds number</b> is set to $Re_{\tau} = 180$, equivalent to $Re = 3250$. The dataset is split into 192 training, 24 validation, and 24 test trajectories, all provided in <i>.npy</i> format.This dataset is designed to facilitate machine learning research in dynamical systems, especially in the challenging context of high-dimensional, turbulent flow regimes.
DOI: 10.17632/89rykrg8j2
title: Foveal cone photoreceptor outer segment length and cone density

description: Data sets used in Domdei et al., 2023 - Cone density is correlated to outer segment length and retinal thickness in the human foveola. Folder contain two .mat files: (1) AOSLO derived foveolar cone density map with annotations (2) OCT derived foveal B-Scans with band segmentations for ILM, Band2, Band3, RPE
DOI: 10.6084/m9.figshare.24633228.v1
title: No.3 National-scale 10-m maps of cropland use intensity in China during 2018-2023

description: There were three groups of national-scale datasets on cropland use intensity over conterminous China during the study period (2018-2023). The first group of datasets was the cropland use intensity dataset for each year. Five 10-m national scale cropland use intensity maps (ChinaCUI10m) were provided for China during 2018-2023. The second group of datasets was the newly derived 10-m cropland dataset (ChinaCropland10m) based on historical cropping activities. The historical cropland use intensity during 2018-2023 was summarized and the ChinaCropland10m was produced through discarding pixels with values of zero (cropland should be actively cropped for at least once during the past five years). The third group of datasets was the degree of intensification revealed by averaged cropland use intensity (ChinaMeanCI10m) based on historical CUI datasets in China during 2018-2023. The datasets are available at the Figshare repository in a Geotiff format. The dataset is provided in ESPG: 4326 (WGS_1984) spatial reference system.
DOI: 10.6084/m9.figshare.25957162.v2
title: G4RP.v2 raw data for NRAS VEGFA mRNA.xlsx

description: G4RP.v2 dataset obtained from human cancer MCF7 cells treated or not with chemical effectors: BRACO-19 (a G4 stabilizer) or PhpC (a G4 destabilizer). Three molecular baits were used for the precipitation of G4s: the G4-specific BioTASQ, BioCyTASQ or biotin-clicked <sup>az</sup>MultiTASQ. The <i>NRAS</i> and <i>VEGFA</i> RNA G4s purified at the end of the G4RP.v2 protocol were quantified by RT-qPCR and the data (<i>i.e.</i>, Ct (dR) values and G4RP-RT-qPCR signal values) are available here.For complete details on the use <b>(1)</b> and execution <b>(2)</b> of this G4RP.v2 protocol, please refer to <b>(1)</b> Mitteaux <i>et al.</i>, <i>Chem. Commun. (Camb.)</i> <b>2024</b>, <i>60</i> (4), 424-427, and <b>(2)</b> Mitteaux and Monchaud, <i>STAR Protocols</i> <b>2024</b>, <i>5</i> (4), 103480.
DOI: 10.17632/cn7vtxdm97
title: Online learning during COVID-19 Pandemic- Dataset from Vietnam

description: The dataset provides information on different aspects of students’ online learning experience during the COVID-19 school closure in Vietnam. Data collection was enabled via the use of an online survey that was administered between September and December 2021 to 5,327 Grade 6 to Grade 9 students (2,898 females and 2,429 males) from five provinces. The survey tool consisted of 64 selected-response and Likert items that were informed by Picciano’s (2021) Online Education Framework and Theories and an extensive literature review of online education during the COVID-19 pandemic. The data collected were categorized into four themes, namely (a) students’ demographic information, (b) students’ access to online learning platforms, (c) online learning activities, modalities, and assessments, and (d) students’ perceptions of the effectiveness of online learning.

Insights from the dataset can benefit local and international researchers, policymakers, and educators who are interested in researching or developing support, intervention, or adjustment programs to enhance educational quality via online learning, particularly in COVID-19 situations.



The dataset provides information about middle school students' online learning experiences during school closure time. The data covers comprehensive dimensions from students' sharing of online learning from learning condition, learning reality to effectiveness. The questionnaire for this data is anchored in Online Education Framework and Theories and the literature review of online education in the area of COVID-19 Pandemic. The questionnaire consists of four main domains. The first domain is about students' demographic information. The second domain mentions students' online learning conditions with basic elements of learning devices, equipment, used digital platforms and applications, and their technical skills. The third domain displays students' experiences of learning activities, modality, and assessment. The last domain is about students' evaluation of online learning effectiveness. 
The data was collected online via google form from September 2021 to December 2021. 5327 middle school students participated in the survey, with 2898 females and 2429 males living in various areas of Vietnam such as rural areas, urban areas, and mountainous areas. The data was mainly collected in 5 provinces in Vietnam, including Hanoi, Can Tho, Nam Dinh, Dak Lak and  Quang Binh
DOI: 10.17632/fy2dvmzz9h
title: Star analyst activities and stock price synchronicity: Korean equity market reforms

description: The study typically investigates the Korean stock market data. The majority of the data used in our study are only accessible through subscription, which we do not have permission to share. Thus, we have provided a detailed and replicable guide in data and methodology. Our data guide covers all variables used in the study, and it specifically reports the source of each data and how each variable is constructed in a granular manner to encourage easier replication and promote future research on similar topics.
DOI: 10.17632/5478ckvpds
title: 3D LiDAR and Photogrammetry Scans of a Stilt House in Tai O Village - 2022 - Case 837295

description: This data includes a point cloud file from a combined photogrammetric and LiDAR scan of a stilt house in Tai O Village. The house is designated "Case 837295" in the research project record. Researchers collected the scan using a single, approximately 10 minute walk-through of the house with the Leica-brand BLK2Go model 3D environment scanner. The scan describes the interior and partial exterior of a stilt house in high detail and color. The scan has been decimated to a voxel size of 5 mm to reduce file size. The data provides clear enough rendering of the physical conditions of the house to allow interpretation of the scan into description of the house's construction, contents, and spatial use. The data is available under embargo of one year to protect the personal information of residents of the house, provided for purposes of digital conservation of the building, and for interpretation of the house's physical conditions and interior contents through further research. More detailed information on the dataset, including the date the scan was conducted, the location of the house, and related interview and survey datasets are available upon reviewed request.