cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5957879
title: MeV SIMS analysis of irradiation effects on molecular signatures

description: Characterizing the effect of MeV ion beam irradiation on biological tissues is important for proton beam therapy, which is routinely used as a form of cancer treatment. It is also important for optimizing protocols for multimodal elemental and molecular imaging. Elemental mapping of trace elements in tissues has been carried out for a long time using nuclear microprobe analysis. However, the effect of MeV ion beams on biological samples is largely unexplored. These effects have been explored in Surrey using two mass spectrometry imaging (MSI) techniques – matrix-assisted laser desorption electrospray (MALDI) and desorption electrospray ionization (DESI). The combination of these techniques with ion beam analysis (IBA) presents a few challenges, namely substrate compatibility and de-localization of elemental markers during measurements. As such, MeV-secondary ion mass spectrometry (SIMS) is being explored as an alternative technique for molecular imaging of biological tissues. MeV SIMS, unlike conventional keV SIMS, allows the detection of intact molecules, making it a prime candidate for the molecular analysis of biological samples. This presents an opportunity to benchmark the capabilities of MeV SIMS against established and widely used techniques such as DESI and MALDI. Experiments carried out at Surrey (reported at the ICNMTA 2020) observed that proton beam-induced damage could be mitigated through the application of a MALDI matrix (employed in MALDI as an ionization aid and sample protection). Thus, the role of this matrix is explored in MeV SIMS experiments.
DOI: 10.5281/zenodo.3467071
title: Annual oil palm plantation maps in Malaysia and Indonesia from 2001 to 2016

description: This package supplements the following paper submitted to ESSD: <strong>Annual oil palm plantation maps in Malaysia and Indonesia from 2001 to 2016</strong>. This dataset contains the annual oil palm maps for Malaysia and Indonesia from 2001 to 2016 at 100 resolution with both oil palm expansion and shrinkage (bi-directional). Note:<br> The post-processing for the initial mapping results would cause the overestimation of changes in the last year (2016 in this case) map, therefore the authors recommend excluding the last year map in the further analysis.
DOI: 10.5281/zenodo.5862784
title: uprolls2018-392

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2018 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2018
DOI: 10.5281/zenodo.5862783
title: uprolls2018-392

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2018 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2018
DOI: 10.5281/zenodo.5862843
title: uprolls2018-400

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2018 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2018
DOI: 10.5281/zenodo.5862842
title: uprolls2018-400

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2018 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2018
DOI: 10.5281/zenodo.5862808
title: uprolls2018-393

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2018 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2018
DOI: 10.5281/zenodo.5862807
title: uprolls2018-393

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2018 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2018
DOI: 10.5281/zenodo.5956845
title: A formative usability study of workflow management systems in label-free digital pathology - Data and Code

description: This repository holds the necessary data and code as well as a descriptive Readme file that was used for our publication "A formative usability study of workflow management systems in label-free digital pathology" by Markus Jelonek et al. (2022), submitted to F1000Research. Abstract: We present a formative usability study that investigates the usability of different<br> workflow management systems in the field of biomedical data analysis. Specifically, we study a task in the field of so-called label-free digital pathology and investigate one graphical user interface based workflow and one script-based workflow to solve the task. Our main intention is to gain first insights into the systematic study of usability in the context of biomedical image analysis, and formulate experiences and guidelines for future usability studies dealing with workflow management systems. Embedded in a specific setup dealing with label-free digital pathology, the core question behind our contribution is how usability studies for scientific workflow management can be conducted, and how they can be used systematically to improve such tools. Further, we address specific questions about the resource utilisation and management of usability studies, including the recruitment of participants as well as the design of specific workflows to be investigated.
description: This research was funded by the German Research Foundation (DFG), grant number MO 2804/1-1, assigned to Axel Mosig.
DOI: 10.5281/zenodo.5956844
title: A formative usability study of workflow management systems in label-free digital pathology - Data and Code

description: This repository holds the necessary data and code as well as a descriptive Readme file that was used for our publication "A formative usability study of workflow management systems in label-free digital pathology" by Markus Jelonek et al. (2022), submitted to F1000Research. Abstract: We present a formative usability study that investigates the usability of different<br> workflow management systems in the field of biomedical data analysis. Specifically, we study a task in the field of so-called label-free digital pathology and investigate one graphical user interface based workflow and one script-based workflow to solve the task. Our main intention is to gain first insights into the systematic study of usability in the context of biomedical image analysis, and formulate experiences and guidelines for future usability studies dealing with workflow management systems. Embedded in a specific setup dealing with label-free digital pathology, the core question behind our contribution is how usability studies for scientific workflow management can be conducted, and how they can be used systematically to improve such tools. Further, we address specific questions about the resource utilisation and management of usability studies, including the recruitment of participants as well as the design of specific workflows to be investigated.
description: This research was funded by the German Research Foundation (DFG), grant number MO 2804/1-1, assigned to Axel Mosig.
DOI: 10.5258/soton/d2001
title: Exploring the Factors Contributing to Fidelity in Literacy Interventions Data

description: Precision teaching is an evidence-based intervention designed to support learners to reach fluency in a target skill. While precision teaching has been shown to be effective in supporting the development of a range of core academic skills there is evidence to suggest that it is often delivered without intervention fidelity. The current mixed methods study collected both quantitative data, from questionnaires related to the fidelity of intervention delivery, and qualitative data, from participants' responses in semi-structured interviews. This data set includes the individual participant responses to fidelity questionnaires regarding their delivery of a PT intervention as well as the transcriptions of interviews regarding their experiences and the factors which impacted fidelity. Also included are the particpant information and consent forms as well as debriefing sheets.
DOI: 10.25934/pr00006051.3
title: Available IPD datapackage for study 'A Phase III, Open-Label, Randomized Study of Atezolizumab (MPDL3280A, Anti-PD-L1 Antibody) in Combination With Carboplatin+Paclitaxel With or Without Bevacizumab Compared With Carboplatin + Paclitaxel + Bevacizumab in Chemotherapy-Naïve Patients With Stage IV Non-Squamous Non-Small Cell Lung Cancer'

description: This randomized, open-label study will evaluate the safety and efficacy of atezolizumab (an engineered anti-programmed death-ligand 1 [PD-L1] antibody) in combination with carboplatin+paclitaxel with or without bevacizumab compared with treatment with carboplatin+paclitaxel+bevacizumab in chemotherapy-naïve participants with Stage IV non-squamous NSCLC. Participants will be randomized in a 1:1:1 ratio to Arm A (Atezolizumab+Carboplatin+Paclitaxel), Arm B (Atezolizumab+Carboplatin+Paclitaxel+Bevacizumab), or Arm C (Carboplatin+Paclitaxel+Bevacizumab).
DOI: 10.6084/m9.figshare.19114871.v1
title: Heritage Park Arboretum Map

description: A booklet presenting a series of maps of the trees of Maslen Arboretum, Brunswick Valley Heritage Park, Mullumbimby NSW Australia.
DOI: 10.5281/zenodo.5957984
title: Low energy MeV SIMS yield measurements of various inorganic samples

description: The low energy range (a few 100 keV to a few MeV) primary ion mode in MeV Secondary Ion Mass Spectrometry (MeV SIMS) and its potential in exploiting the capabilities of conventional (keV) SIMS and MeV SIMS simultaneously was investigated. The aim is to see if in this energy range both types of materials, inorganic and organic, can be simultaneously analyzed. A feasibility study was conducted, first by analyzing the dependence of secondary ion yields in Indium Tin Oxide (ITO – In2O5Sn) and leucine (C6H13NO2) on various primary ion energies and charge states of Cu beam, within the scope of equal influence of electronic and nuclear stopping. Expected behavior was observed for both targets (mainly nuclear sputtering for ITO and electronic sputtering for leucine). MeV SIMS images of samples containing separate regions of Cr and leucine were obtained using both keV and MeV primary ions. Based on the image contrast and measured data, the benefit of a low energy beam is demonstrated by Cr+ intensity leveling with leucine [M+H]+ intensity, as opposed to a significant contrast at higher energy. It is estimated that by lowering the energy, leucine [M+H]+ yield efficiency lowers roughly 20 times as a price for gaining about 10 times larger efficiency of Cr+ yield, while leucine [M+H]+ yield still remains sufficiently pronounced.
DOI: 10.5281/zenodo.5957983
title: Low energy MeV SIMS yield measurements of various inorganic samples

description: The low energy range (a few 100 keV to a few MeV) primary ion mode in MeV Secondary Ion Mass Spectrometry (MeV SIMS) and its potential in exploiting the capabilities of conventional (keV) SIMS and MeV SIMS simultaneously was investigated. The aim is to see if in this energy range both types of materials, inorganic and organic, can be simultaneously analyzed. A feasibility study was conducted, first by analyzing the dependence of secondary ion yields in Indium Tin Oxide (ITO – In2O5Sn) and leucine (C6H13NO2) on various primary ion energies and charge states of Cu beam, within the scope of equal influence of electronic and nuclear stopping. Expected behavior was observed for both targets (mainly nuclear sputtering for ITO and electronic sputtering for leucine). MeV SIMS images of samples containing separate regions of Cr and leucine were obtained using both keV and MeV primary ions. Based on the image contrast and measured data, the benefit of a low energy beam is demonstrated by Cr+ intensity leveling with leucine [M+H]+ intensity, as opposed to a significant contrast at higher energy. It is estimated that by lowering the energy, leucine [M+H]+ yield efficiency lowers roughly 20 times as a price for gaining about 10 times larger efficiency of Cr+ yield, while leucine [M+H]+ yield still remains sufficiently pronounced.
DOI: 10.25505/fiz.icsd.cc2698b4
title: CSD 2034695: Experimental Crystal Structure Determination

description: Related Article: D.R. Onken, D. Perrodin, S.C. Vogel, E.D. Bourret, F. Moretti|2020|Acta Crystallogr.,Sect.E:Cryst.Commun.|76|1716|doi:10.1107/S2056989020013201
DOI: 10.5281/zenodo.5862720
title: uprolls2018-380

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2018 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2018
DOI: 10.5281/zenodo.5862719
title: uprolls2018-380

description: This deposit serves as a long-term archive for the unprocessed raw data behind the uprolls2018 table in my comprehensive dataset on religion and politics in India, which is available at https://github.com/raphael-susewind/india-religion-politics/tree/master/uprolls2018
DOI: 10.5517/ccdc.csd.cc26c20p
title: CCDC 2036421: Experimental Crystal Structure Determination

description: Related Article: Keisuke Nishikawa|2020|CSD Communication|||
description: Related Article: Keisuke Nishikawa, Koki Kikuta, Tomoki Tsuruta, Hitoshi Nakatsukasa, Sho Sugahara, Shinji Kume, Yoshiki Morimoto|2022|Org.Lett.|24|531|doi:10.1021/acs.orglett.1c03924
DOI: 10.5517/ccdc.csd.cc26c21q
title: CCDC 2036422: Experimental Crystal Structure Determination

description: Related Article: Keisuke Nishikawa|2020|CSD Communication|||
description: Related Article: Keisuke Nishikawa, Koki Kikuta, Tomoki Tsuruta, Hitoshi Nakatsukasa, Sho Sugahara, Shinji Kume, Yoshiki Morimoto|2022|Org.Lett.|24|531|doi:10.1021/acs.orglett.1c03924
DOI: 10.5517/ccdc.csd.cc26c22r
title: CCDC 2036423: Experimental Crystal Structure Determination

description: Related Article: Keisuke Nishikawa|2020|CSD Communication|||
description: Related Article: Keisuke Nishikawa, Koki Kikuta, Tomoki Tsuruta, Hitoshi Nakatsukasa, Sho Sugahara, Shinji Kume, Yoshiki Morimoto|2022|Org.Lett.|24|531|doi:10.1021/acs.orglett.1c03924
DOI: 10.5517/ccdc.csd.cc26jpbs
title: CCDC 2041825: Experimental Crystal Structure Determination

description: Related Article: Monika Rzonsowska, Katarzyna Mituła, Julia Duszczak, Małgorzata Kasperkowiak, Rafał Januszewski, Anita Grześkiewicz, Maciej Kubicki, Daria Głowacka, Beata Dudziec|2022|Inorg.Chem.Front.|9|379|doi:10.1039/D1QI01363G
DOI: 10.5517/ccdc.csd.cc26jpct
title: CCDC 2041826: Experimental Crystal Structure Determination

description: Related Article: Monika Rzonsowska, Katarzyna Mituła, Julia Duszczak, Małgorzata Kasperkowiak, Rafał Januszewski, Anita Grześkiewicz, Maciej Kubicki, Daria Głowacka, Beata Dudziec|2022|Inorg.Chem.Front.|9|379|doi:10.1039/D1QI01363G
DOI: 10.5517/ccdc.csd.cc26jpdv
title: CCDC 2041827: Experimental Crystal Structure Determination

description: Related Article: Monika Rzonsowska, Katarzyna Mituła, Julia Duszczak, Małgorzata Kasperkowiak, Rafał Januszewski, Anita Grześkiewicz, Maciej Kubicki, Daria Głowacka, Beata Dudziec|2022|Inorg.Chem.Front.|9|379|doi:10.1039/D1QI01363G
DOI: 10.5517/ccdc.csd.cc26jpfw
title: CCDC 2041828: Experimental Crystal Structure Determination

description: Related Article: Monika Rzonsowska, Katarzyna Mituła, Julia Duszczak, Małgorzata Kasperkowiak, Rafał Januszewski, Anita Grześkiewicz, Maciej Kubicki, Daria Głowacka, Beata Dudziec|2022|Inorg.Chem.Front.|9|379|doi:10.1039/D1QI01363G
DOI: 10.5517/ccdc.csd.cc26jpgx
title: CCDC 2041829: Experimental Crystal Structure Determination

description: Related Article: Monika Rzonsowska, Katarzyna Mituła, Julia Duszczak, Małgorzata Kasperkowiak, Rafał Januszewski, Anita Grześkiewicz, Maciej Kubicki, Daria Głowacka, Beata Dudziec|2022|Inorg.Chem.Front.|9|379|doi:10.1039/D1QI01363G
DOI: 10.5517/ccdc.csd.cc26jphy
title: CCDC 2041830: Experimental Crystal Structure Determination

description: Related Article: Monika Rzonsowska, Katarzyna Mituła, Julia Duszczak, Małgorzata Kasperkowiak, Rafał Januszewski, Anita Grześkiewicz, Maciej Kubicki, Daria Głowacka, Beata Dudziec|2022|Inorg.Chem.Front.|9|379|doi:10.1039/D1QI01363G
DOI: 10.5517/ccdc.csd.cc26jpjz
title: CCDC 2041831: Experimental Crystal Structure Determination

description: Related Article: Monika Rzonsowska, Katarzyna Mituła, Julia Duszczak, Małgorzata Kasperkowiak, Rafał Januszewski, Anita Grześkiewicz, Maciej Kubicki, Daria Głowacka, Beata Dudziec|2022|Inorg.Chem.Front.|9|379|doi:10.1039/D1QI01363G
DOI: 10.5517/ccdc.csd.cc26kp1j
title: CCDC 2042777: Experimental Crystal Structure Determination

description: Related Article: Jin-Hui Fu|2021|CSD Communication|||
DOI: 10.5255/ukda-sn-855417
title: Implicit Bias Against Disabled and Older People in the Workplace, 2020-2021

description: This data contains 108 responses to the disability version of the Implicit Association Test (IAT) and a subsample of 50 responses to the age version of the IAT. It also contains associated demographic and employment information as well as the Health-Related Quality of Life survey EQ-5D-5L.
DOI: 10.5281/zenodo.5958143
title: CFRP Composites

description: SmartFan Project public data
DOI: 10.5281/zenodo.5958152
title: Khirbet el Eika Supplements for the zooarchaeological report (2022)

description: Zooarchaeological supplement that includes (1) the full database with faunal identifications, and (2) comparanda of Hellenistic assemblages from Israel.
DOI: 10.5281/zenodo.5958142
title: CFRP Composites

description: SmartFan Project public data
DOI: 10.5281/zenodo.5931058
title: High-throughput measurement and mapping of individual replication fork velocities by nanopore sequencing

description: These data are related to the "<strong>High-throughput measurement and mapping of individual replication fork velocities by nanopore sequencing" </strong>manuscript by Theulot, Lacroix et al. and to the GitHub repository NanoForkSpeed (https://github.com/LacroixLaurent/NanoForkSpeed). BT1_run4.tar.gz contains the nanopore reads from a typical experiment as fast5 files. BT1_run4_mega.zip contains the result of the BrdU basecalling as described on the GitHub page in a modified bam file format as described on the GitHub page NanoForkSpeed/BrdU_Basecalling.. BT1_run4_Megalodon_00_smdata.rds contains the result of the parsing function for the modified bam file as described on the GitHub page NanoForkSpeed/BrdU_Basecalling. BT1_run4_Megalodon_00_NFS_data.rds contains the result of the fork detection procedure on the BT1_run4_Megalodon_00_smdata.rds file as described on the GitHub page NanoForkSpeed/Forks_Detection. BT1_run4_merged_NFS_data.rds contains the result of the NFS_merge function as described on the GitHub page NanoForkSpeed/Forks_Detection.
DOI: 10.25934/pr00006053.3
title: Available IPD datapackage for study 'A Phase III, Open-Label, Multicenter, Randomized Study Evaluating the Efficacy and Safety of Atezolizumab (MPDL3280A, Anti-PD-L1 Antibody) in Combination With Carboplatin+Paclitaxel or Atezolizumab in Combination With Carboplatin+Nab-Paclitaxel Versus Carboplatin+Nab-Paclitaxel in Chemotherapy-Naive Patients With Stage IV Squamous Non-Small Cell Lung Cancer'

description: This randomized, open-label study will evaluate the safety and efficacy of atezolizumab (MPDL3280A) in combination with carboplatin + paclitaxel or carboplatin + nab-paclitaxel compared with treatment with carboplatin + nab-paclitaxel in chemotherapy-naive participants with Stage IV squamous NSCLC.
DOI: 10.5281/zenodo.5842183
title: MaxEnt analysis of Ochotona rufescens, Oumm Qatafa

description: For pika, we collected the coordinates of 35 find spots of recent and sub-recent <em>O. rufescens</em> (Čermák et al. 2006; Khaki-Saneh 2014), a set of rasters representing current (1979 - 2013) climate based on standard 19 bioclim variables at 10-min resolution (Anthropocene, v1.2b: https://chelsa-climate.org/). These data were used to construct a Maximum Entropy model for the current distribution of the Afghan pika using the ‘maxnet’ package (Phillips 2021) in R (version 4.0.2). Other libraries used include ‘terra’ (Hijman 2021) and ‘modEvA’ (Barbosa et al. 2013). The model provided a list of variables that parsimoniously predict suitable environments for the Afghan pika, and also a projection of the probability of finding suitable habitats, as defined by the bioclimatic variables, in geographical space under present-day conditions. The values of the selected model bioclimatic variables at the present find spots were compared with the same values for Oumm Qatafa to examine its present climatic suitability as a habitat for pikas. Barbosa, A.M., Real, R., Munoz, A.R. & Brown, J.A. (2013). New measures for assessing model equilibrium and prediction mismatch in species distribution models. Diversity and Distributions, 19(10), 1333-1338. https://onlinelibrary.wiley.com/doi/full/10.1111/ddi.12100. Čermák, S., Obuch, S., Benda, P. (2006). Notes on the genus <em>Ochotona</em> in the Middle East (Lagomorpha: Ochotonidae). <em>Lynx</em> (Praha) 37, 51–66. Hijmans, R.J. (2021). terra: Spatial Data Analysis. R package version 1.5-8. https://rspatial.org/terra/ Khaki Sahneh, S., Nouri, Z., Alizadeh Shabani, A., Dehdar Dargahi, M. (2014). A review on habitats selection by Afghan Pika (<em>Ochotona rufescens</em>), case study: the Lashgardar protected area in Hamadan Province. <em>Journal on New Biological Reports</em> 3(3), 186–199. Phillips, S. (2021). maxnet: Fitting 'Maxent' Species Distribution Models with 'glmnet'. R package version 0.1.4. https://CRAN.R-project.org/package=maxnet.
description: Changed from a MIAmaxent to a maxnet model for a rarified raster stack, and added some model quality estimations.