cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13532293
title: Additional file 7 of ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus

description: Additional file 7. Regions (peaks) unique to BRSV challenged calves identified through Diffbind’s occupancy analysis.
DOI: 10.6084/m9.figshare.13532369.v1
title: Additional file 2 of Experimental conditions influence the formation and composition of the corona around gold nanoparticles

description: Additional file 2: Table S1. Identified proteins by nanoLC-MS/MS in RIPA-PC.
DOI: 10.6084/m9.figshare.13532372
title: Additional file 3 of Experimental conditions influence the formation and composition of the corona around gold nanoparticles

description: Additional file 3: Table S2. Identified proteins by nanoLC-MS/MS in UREA-PC.
DOI: 10.6084/m9.figshare.13532387.v1
title: Additional file 1 of New insights on key genes involved in drought stress response of barley: gene networks reconstruction, hub, and promoter analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.13532375.v1
title: Additional file 4 of Experimental conditions influence the formation and composition of the corona around gold nanoparticles

description: Additional file 4: Table S3. Identified proteins by nanoLC-MS/MS in original plasma, eLAPs and eLAPs-PC.
DOI: 10.6084/m9.figshare.13532387
title: Additional file 1 of New insights on key genes involved in drought stress response of barley: gene networks reconstruction, hub, and promoter analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.13532369
title: Additional file 2 of Experimental conditions influence the formation and composition of the corona around gold nanoparticles

description: Additional file 2: Table S1. Identified proteins by nanoLC-MS/MS in RIPA-PC.
DOI: 10.6084/m9.figshare.13532372.v1
title: Additional file 3 of Experimental conditions influence the formation and composition of the corona around gold nanoparticles

description: Additional file 3: Table S2. Identified proteins by nanoLC-MS/MS in UREA-PC.
DOI: 10.6084/m9.figshare.13532375
title: Additional file 4 of Experimental conditions influence the formation and composition of the corona around gold nanoparticles

description: Additional file 4: Table S3. Identified proteins by nanoLC-MS/MS in original plasma, eLAPs and eLAPs-PC.
DOI: 10.6084/m9.figshare.13532476
title: Additional file 2 of A novel immune classification reveals distinct immune escape mechanism and genomic alterations: implications for immunotherapy in hepatocellular carcinoma

description: Additional file 2: Table S1. Basic information of datasets included in this study for identifying distinct TIME phenotypes. Table S2. The specific Hallmark pathways of each TIME phenotype in the GEO cohort. Table S3. The specific KEGG pathways of each TIME phenotype in the GEO cohort. Table S4. The specific Hallmark pathways of each TIME phenotype in the TCGA cohort. Table S5. The specific KEGG pathways of each TIME phenotype in the TCGA cohort. Table S6. The difference of chemokines, ILs, IFNs, and other important cytokines and their receptors among three TIME phenotypes in the expression, CNV and mutation level. Table S7. The significant focal copy number alterations (including amplification and deletion) of each TIME phenotype. Table S8. The epigenetically silenced genes (ESGs) in three TIME phenotypes. Table S9. Ninety-eight phenotype-related differentially expressed genes (DEGs). Table S10. GO enrichment analysis of 98 phenotype-related DEGs. Table S11. KEGG enrichment analysis of 98 phenotype-related DEGs. Table S12. Multivariate COX regression analysis of TI in HCC and pancancer.
DOI: 10.6084/m9.figshare.13532476.v1
title: Additional file 2 of A novel immune classification reveals distinct immune escape mechanism and genomic alterations: implications for immunotherapy in hepatocellular carcinoma

description: Additional file 2: Table S1. Basic information of datasets included in this study for identifying distinct TIME phenotypes. Table S2. The specific Hallmark pathways of each TIME phenotype in the GEO cohort. Table S3. The specific KEGG pathways of each TIME phenotype in the GEO cohort. Table S4. The specific Hallmark pathways of each TIME phenotype in the TCGA cohort. Table S5. The specific KEGG pathways of each TIME phenotype in the TCGA cohort. Table S6. The difference of chemokines, ILs, IFNs, and other important cytokines and their receptors among three TIME phenotypes in the expression, CNV and mutation level. Table S7. The significant focal copy number alterations (including amplification and deletion) of each TIME phenotype. Table S8. The epigenetically silenced genes (ESGs) in three TIME phenotypes. Table S9. Ninety-eight phenotype-related differentially expressed genes (DEGs). Table S10. GO enrichment analysis of 98 phenotype-related DEGs. Table S11. KEGG enrichment analysis of 98 phenotype-related DEGs. Table S12. Multivariate COX regression analysis of TI in HCC and pancancer.
DOI: 10.6084/m9.figshare.13532515.v1
title: Additional file 1 of Spondylocarpotarsal synostosis syndrome due to a novel loss of function FLNB variant: a case report

description: Additional file 1: Table S1. Variants revealed after whole exome sequence analysis and filtration.
DOI: 10.6084/m9.figshare.13532516.v1
title: Additional file 1 of Factors that promote and sustain the use of traditional, complementary and integrative medicine services at LEKMA hospital, Ghana, 2017: an observational study

description: Additional file 1. Dataset for journal revised. Responses of patients assessing TCIM services in the facility.
DOI: 10.6084/m9.figshare.13532516
title: Additional file 1 of Factors that promote and sustain the use of traditional, complementary and integrative medicine services at LEKMA hospital, Ghana, 2017: an observational study

description: Additional file 1. Dataset for journal revised. Responses of patients assessing TCIM services in the facility.
DOI: 10.6084/m9.figshare.13532515
title: Additional file 1 of Spondylocarpotarsal synostosis syndrome due to a novel loss of function FLNB variant: a case report

description: Additional file 1: Table S1. Variants revealed after whole exome sequence analysis and filtration.
DOI: 10.6084/m9.figshare.13532669
title: Additional file 1 of ShareDNA: a smartphone app to facilitate family communication of genetic results

description: Additional file 1: File shows the results for each participant walking through and providing feedback for each function in the app.
DOI: 10.6084/m9.figshare.13532669.v1
title: Additional file 1 of ShareDNA: a smartphone app to facilitate family communication of genetic results

description: Additional file 1: File shows the results for each participant walking through and providing feedback for each function in the app.
DOI: 10.6084/m9.figshare.13532812
title: Additional file 3 of Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphid (Myzus persicae Sulzer)

description: Additional file 3. List of regulated proteins (from top to bottom) represented in the heat map corresponding to Fig. 1.
DOI: 10.6084/m9.figshare.13532806.v1
title: Additional file 1 of Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphid (Myzus persicae Sulzer)

description: Additional file 1. Complete list of the regulated proteins with the parameters for protein identification, protein abundances and their functional annotations.
DOI: 10.6084/m9.figshare.13532806
title: Additional file 1 of Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphid (Myzus persicae Sulzer)

description: Additional file 1. Complete list of the regulated proteins with the parameters for protein identification, protein abundances and their functional annotations.
DOI: 10.6084/m9.figshare.13532812.v1
title: Additional file 3 of Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphid (Myzus persicae Sulzer)

description: Additional file 3. List of regulated proteins (from top to bottom) represented in the heat map corresponding to Fig. 1.
DOI: 10.6084/m9.figshare.13532878
title: Additional file 4 of Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain

description: Additional file 4 Table S1 IMPaLA-Enriched Pathways in the KEGG Database. #, number; IMPaLA, Integrated Molecular Pathway Level Analysis; KEGG, Kyoto Encyclopaedia of Genes and Genomes
DOI: 10.6084/m9.figshare.13532878.v1
title: Additional file 4 of Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain

description: Additional file 4 Table S1 IMPaLA-Enriched Pathways in the KEGG Database. #, number; IMPaLA, Integrated Molecular Pathway Level Analysis; KEGG, Kyoto Encyclopaedia of Genes and Genomes
DOI: 10.6084/m9.figshare.13532881
title: Additional file 5 of Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain

description: Additional file 5 Table S2 NanoString nCounter Custom CodeSet: C6959X1. *P
DOI: 10.6084/m9.figshare.13532881.v1
title: Additional file 5 of Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain

description: Additional file 5 Table S2 NanoString nCounter Custom CodeSet: C6959X1. *P
DOI: 10.6084/m9.figshare.13532884.v1
title: Additional file 6 of Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain

description: Additional file 6 Table S3 Neurone-, Astrocyte-, and Endothelial Cell-Specific Transcripts. RMA, robust multi-array average
DOI: 10.6084/m9.figshare.13532884
title: Additional file 6 of Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain

description: Additional file 6 Table S3 Neurone-, Astrocyte-, and Endothelial Cell-Specific Transcripts. RMA, robust multi-array average
DOI: 10.6084/m9.figshare.13532980
title: Additional file 1 of Circular RNA hsa_circ_0061395 accelerates hepatocellular carcinoma progression via regulation of the miR-877-5p/PIK3R3 axis

description: Additional file 1. The distribution of cells at each stage of all cell cycle experiments.
DOI: 10.6084/m9.figshare.13532980.v1
title: Additional file 1 of Circular RNA hsa_circ_0061395 accelerates hepatocellular carcinoma progression via regulation of the miR-877-5p/PIK3R3 axis

description: Additional file 1. The distribution of cells at each stage of all cell cycle experiments.
DOI: 10.6084/m9.figshare.13533013.v1
title: Additional file 13 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 13: Data S7. With Transcriptomics data.
DOI: 10.6084/m9.figshare.13533004
title: Additional file 10 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 10: Data S4. With anaerobic cultivation Analysis 4.
DOI: 10.6084/m9.figshare.13533016
title: Additional file 14 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 14: Data S8. With GSMsimulation data.
DOI: 10.6084/m9.figshare.13533019
title: Additional file 15 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 15: Data S9. With random forest data.
DOI: 10.6084/m9.figshare.13533019.v1
title: Additional file 15 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 15: Data S9. With random forest data.
DOI: 10.6084/m9.figshare.13533022
title: Additional file 16 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 16: DataS10. With anaerobic cultivation Analysis 5.
DOI: 10.6084/m9.figshare.13533025
title: Additional file 17 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 17: DataS11. With anaerobic cultivation Analysis 6.
DOI: 10.6084/m9.figshare.13533010
title: Additional file 12 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 12: Data S6. With PDC data.
DOI: 10.6084/m9.figshare.13533022.v1
title: Additional file 16 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 16: DataS10. With anaerobic cultivation Analysis 5.
DOI: 10.6084/m9.figshare.13533031.v1
title: Additional file 1 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 1: Table S1. Bacterial strains and plasmids used in this study .xlsx file with bacterial strains and plasmids listed, including references or sources
DOI: 10.6084/m9.figshare.13533004.v1
title: Additional file 10 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 10: Data S4. With anaerobic cultivation Analysis 4.
DOI: 10.6084/m9.figshare.13533031
title: Additional file 1 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 1: Table S1. Bacterial strains and plasmids used in this study .xlsx file with bacterial strains and plasmids listed, including references or sources
DOI: 10.6084/m9.figshare.13533007
title: Additional file 11 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 11: Data S5. With Pseudomonas selection database as obtained via GOLDDatabase, including extra information and sources.
DOI: 10.6084/m9.figshare.13533055.v1
title: Additional file 9 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 9: Data S3. With anaerobic cultivation Analysis 3.
DOI: 10.6084/m9.figshare.13533025.v1
title: Additional file 17 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 17: DataS11. With anaerobic cultivation Analysis 6.
DOI: 10.6084/m9.figshare.13533049
title: Additional file 7 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 7: Data S1. With anaerobic cultivation Analysis 1.
DOI: 10.6084/m9.figshare.13533007.v1
title: Additional file 11 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 11: Data S5. With Pseudomonas selection database as obtained via GOLDDatabase, including extra information and sources.
DOI: 10.6084/m9.figshare.13533010.v1
title: Additional file 12 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 12: Data S6. With PDC data.
DOI: 10.6084/m9.figshare.13533055
title: Additional file 9 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 9: Data S3. With anaerobic cultivation Analysis 3.
DOI: 10.6084/m9.figshare.13533013
title: Additional file 13 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 13: Data S7. With Transcriptomics data.
DOI: 10.6084/m9.figshare.13533052
title: Additional file 8 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 8: Data S2. With anaerobic cultivation Analysis 2.
DOI: 10.6084/m9.figshare.13533052.v1
title: Additional file 8 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 8: Data S2. With anaerobic cultivation Analysis 2.
DOI: 10.6084/m9.figshare.13533049.v1
title: Additional file 7 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 7: Data S1. With anaerobic cultivation Analysis 1.
DOI: 10.6084/m9.figshare.13533016.v1
title: Additional file 14 of A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

description: Additional file 14: Data S8. With GSMsimulation data.
DOI: 10.6084/m9.figshare.13533079
title: Additional file 1 of Developmental cannabidiol exposure increases anxiety and modifies genome-wide brain DNA methylation in adult female mice

description: Additional file 1: Primer information for pyrosequencing of LINE1 and IAP transposons.
DOI: 10.6084/m9.figshare.13533079.v1
title: Additional file 1 of Developmental cannabidiol exposure increases anxiety and modifies genome-wide brain DNA methylation in adult female mice

description: Additional file 1: Primer information for pyrosequencing of LINE1 and IAP transposons.
DOI: 10.6084/m9.figshare.13533097
title: Additional file 7 of Developmental cannabidiol exposure increases anxiety and modifies genome-wide brain DNA methylation in adult female mice

description: Additional file 7: Table of all unique, statistically significant differentially methylated loci (DMLs) identified between CBD-exposed and control tissues consisting of F0 cerebral cortex, F1 cerebral cortex, and F1 hippocampus.
DOI: 10.6084/m9.figshare.13533103
title: Additional file 9 of Developmental cannabidiol exposure increases anxiety and modifies genome-wide brain DNA methylation in adult female mice

description: Additional file 9: Complete results returned by the functional enrichment tool ToppFun for lists of DML-containing genes in F0 cerebral cortex, F1 cerebral cortex, and F1 hippocampus.
DOI: 10.6084/m9.figshare.13533103.v1
title: Additional file 9 of Developmental cannabidiol exposure increases anxiety and modifies genome-wide brain DNA methylation in adult female mice

description: Additional file 9: Complete results returned by the functional enrichment tool ToppFun for lists of DML-containing genes in F0 cerebral cortex, F1 cerebral cortex, and F1 hippocampus.
DOI: 10.21227/gn4q-fm44
title: IEEE VIS Figures and Tables Image Dataset

description: A collection of about 30K images that represents figures and tables from each track of the IEEE Visualization conference series (Vis, SciVis, InfoVis, VAST).
DOI: 10.6084/m9.figshare.13533097.v1
title: Additional file 7 of Developmental cannabidiol exposure increases anxiety and modifies genome-wide brain DNA methylation in adult female mice

description: Additional file 7: Table of all unique, statistically significant differentially methylated loci (DMLs) identified between CBD-exposed and control tissues consisting of F0 cerebral cortex, F1 cerebral cortex, and F1 hippocampus.
DOI: 10.6084/m9.figshare.13533118.v1
title: Additional file 2 of nanotatoR: a tool for enhanced annotation of genomic structural variants

description: Additional file 2: Supplementary Table S1. NA24385 nanotatoR-annotated structural variant results. Content of the various tabs is detailed in the first tab (“LegendS1”) of the Excel workbook. SVs reported in the indel, inv., and trans tabs have undergone the default nanotatoR filtration (found in self molecules, passed chimeric score threshold). Columns in each sheet of the workbook are either a direct output of SVcaller or appended by nanotatoR, as indicated in column 3 of the table. Details about SVcaller columns are available at https://bionanogenomics.com/wp-content/uploads/2017/03/30041-SMAP-File-Format-Specification-Sheet.pdf .
DOI: 10.6084/m9.figshare.13533133.v1
title: Additional file 7 of nanotatoR: a tool for enhanced annotation of genomic structural variants

description: Additional file 7: Supplementary Table S6. nanotatoR annotation of structural variants in the DLE-labeled sample NA12878 dataset. Content of the various tabs is detailed in the first tab (“LegendS6”) of the Excel book. SVs reported in the indel, inv., and trans tabs have undergone the default nanotatoR filtration (found in self molecules, passed chimeric score threshold). Columns in each sheet of the workbook are either a direct output of SVcaller or appended by nanotatoR, as indicated in column 3 of the table. In the all_PG_OV tab, the cells containing the query genes are highlighted in purple. Details about SVcaller columns are available at https://bionanogenomics.com/wp-content/uploads/2017/03/30041-SMAP-File-Format-Specification-Sheet.pdf
DOI: 10.6084/m9.figshare.13533136
title: Additional file 8 of nanotatoR: a tool for enhanced annotation of genomic structural variants

description: Additional file 8: Supplementary Table S7. nanotatoR annotation of structural variants in the dual-labeled sample NA12878 dataset (SVmerge output). Content of the various tabs is detailed in the first tab (“LegendS7”) of the Excel book. SVs reported in the indel, inv., and trans tabs have undergone the default nanotatoR filtration (found in self molecules, passed chimeric score threshold). Columns in each sheet of the workbook are either a direct output of SVcaller or appended by nanotatoR, as indicated in column 3 of the table. In the all_PG_OV tab, the cells containing the query genes are highlighted in purple. Details about SVcaller columns are available at https://bionanogenomics.com/wp-content/uploads/2017/03/30041-SMAP-File-Format-Specification-Sheet.pdf
DOI: 10.6084/m9.figshare.13533127
title: Additional file 5 of nanotatoR: a tool for enhanced annotation of genomic structural variants

description: Additional file 5: Supplementary Table S4. Calculation of BNDB database frequency for the deletion variant overlapping UGT2B17 in sample NA24385. Content of the tabs and column names is detailed in the first tab (“LegendS4”) of the Excel workbook. The columns used to calculate the filtered and unfiltered frequencies are highlighted in the GM24385_data_all tab.
DOI: 10.6084/m9.figshare.13533133
title: Additional file 7 of nanotatoR: a tool for enhanced annotation of genomic structural variants

description: Additional file 7: Supplementary Table S6. nanotatoR annotation of structural variants in the DLE-labeled sample NA12878 dataset. Content of the various tabs is detailed in the first tab (“LegendS6”) of the Excel book. SVs reported in the indel, inv., and trans tabs have undergone the default nanotatoR filtration (found in self molecules, passed chimeric score threshold). Columns in each sheet of the workbook are either a direct output of SVcaller or appended by nanotatoR, as indicated in column 3 of the table. In the all_PG_OV tab, the cells containing the query genes are highlighted in purple. Details about SVcaller columns are available at https://bionanogenomics.com/wp-content/uploads/2017/03/30041-SMAP-File-Format-Specification-Sheet.pdf