cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28987250
title: Supplementary Material for: CCP1 loss in bone marrow mesenchymal stem cells inhibited osteogenic differentiation by enhancing microtubule glutamylation

description: Cytosolic carboxypeptidase 1 (CCP1) is a deglutamylase that antagonizes polyglutamylation. Mutations in human CCP1 gene cause a severe disease known as childhood-onset neurodegeneration with cerebellar atrophy (CONDCA), which is characterized by marked growth retardation. However, the role and mechanisms of CCP1 in skeletal development remain unclear. In this study, we used CCP1 knockout (CCP1-KO) mice to assess bone mass changes by micro-CT, HE, alkaline phosphatase (ALP) staining, tartrateresistant acid phosphatase (TRAP) staining and immunofluorescence staining. Changes in osteogenic differentiation, proliferation and migration capacity of bone marrow mesenchymal stem cells (BMSCs) were assessed by ALP, alizarin red (ARS) staining, quantitative real-time PCR (qRT-PCR), EdU staining and cell scratching assay. Then, tubulin glutamylation and primary cilia of BMSCs after deletion of CCP1 was analyzed by western blot (WB) and immunofluorescence staining. Finally, CB839, an inhibitor of glutamine metabolism, was used to detect changes in the osteogenic differentiation ability and primary cilia of BMSCs after reducing the elevated glutamylation level. CCP1-KO mice exhibited phenotypes relevant to humans, including reduced body size, decreased bone mass, and reduced bone density during growth and development. CCP1 deficiency impairs the proliferation, migration and osteogenic differentiation of BMSCs. Meanwhile, the number of pre-osteoblasts derived from BMSCs is decreased, leading to impaired osteogenesis. At the cellular level, CCP1 loss results in aberrant tubulin glutamylation, increased microtubule glutamylation, and shortened primary cilia in BMSCs. Finally, reduction of abnormally elevated tubulin glutamylation was efficacious for promoting osteogenic differentiation of BMSCs and restoring primary cilia length of BMSCs. We propose that CCP1 plays a critical role in regulating BMSCs differentiation and promotes osteogenesis by modulating the post-translational modifications (PTM) of tubulin, with a view to provide new targets for the prevention and treatment of hard tissue diseases.
DOI: 10.21233/yj27-1772
title: LDDsite3204 ostracode surface sample dataset

description: Raw data for the LDDsite3204 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15374266
title: Jugenheim Kreisap-Apotheke

description: Historical questionnaire/s  1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963[Funktion: Im Findbuch anzeigen]

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot  be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht  veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15374267
title: Jugenheim Kreisap-Apotheke

description: Historical questionnaire/s  1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963[Funktion: Im Findbuch anzeigen]

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot  be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht  veröffentlicht werden dürfen).
DOI: 10.21233/e28q-cw78
title: Lake Biwa, South Basin ostracode surface sample dataset

description: Raw data for the Lake Biwa, South Basin ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.34740/kaggle/dsv/11738711
title: cat_img_toy
DOI: 10.21233/4vrd-4e49
title: Wakomao Lake ostracode surface sample dataset

description: Raw data for the Wakomao Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/p7td-p588
title: Princeville testate amoebae dataset

description: Raw data for the Princeville testate amoebae dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/amhc-8n75
title: Topaz Lake diatom bottom sample dataset

description: Raw data for the Topaz Lake diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rvhm-cc29
title: Mississippi River ostracode surface sample dataset

description: Raw data for the Mississippi River ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.z857j9
title: Occurrence Download

description: A dataset containing 15645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acridotheres tristis (Linnaeus, 1766)",
 {
 "or" : [
 "Year 1990-1990",
 "Year 2018-2018"
 ]
 }
 ]
}

 The dataset includes 15645 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023356-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/x296-e152
title: Xinjiang2 testate amoebae surface sample dataset

description: Raw data for the Xinjiang2 testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n98s-v448
title: Limagne pollen dataset

description: Raw data for the Limagne pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.wqj3b2
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Hypholoma subviride (Berk. & M.A.Curtis) Dennis"
 ]
}

 The dataset includes 41 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023357-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/g5wr-gk15
title: Lake Hinden water chemistry dataset

description: Raw data for the Lake Hinden water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ea8n-ga25
title: LDDsite4722 ostracode surface sample dataset

description: Raw data for the LDDsite4722 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jj0h-rn96
title: LDDsite5824 ostracode surface sample dataset

description: Raw data for the LDDsite5824 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.28931789
title: Telling AI Data Stories: combining insights from academic literature and RAG techniques to guide prompt design

description: This Google Colab notebook contains the full implementation of a Retrieval-Augmented Generation (RAG) pipeline used in the study <i>“</i>Telling AI Data Stories: combining insights from academic literature and RAG techniques to guide prompt design<i>”</i>. It includes automatic PDF text extraction, passage chunking, semantic search using sentence embeddings and FAISS, and prompt generation for ChatGPT-4. In addition to the automated pipeline, the notebook also includes examples of manually selected passages used to construct prompts. It is designed to support reproducibility and allow other researchers to adapt the approach with different articles or datasets.
DOI: 10.21233/ya9v-4094
title: Prairie Owl water chemistry dataset

description: Raw data for the Prairie Owl water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/gt0b-f190
title: Pine Lake pollen surface sample dataset

description: Raw data for the Pine Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15374255
title: Uso da Inteligência Artificial generativa como ferramenta de apoio ao bibliotecário: uma comparação entre ChatGPT, GEMINI, DeepSeek, Grok, CoPilot e CatalogerGPT na catalogação
DOI: 10.5281/zenodo.15374256
title: Uso da Inteligência Artificial generativa como ferramenta de apoio ao bibliotecário: uma comparação entre ChatGPT, GEMINI, DeepSeek, Grok, CoPilot e CatalogerGPT na catalogação
DOI: 10.21233/0fbn-g819
title: Channel Lake diatom dataset

description: Raw data for the Channel Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.14535448
title: Elevation-related accretion-erosion rates in the period of 1996 to 2022 in the Wadden Sea

description: Supplementary Information for:

Pineda Leiva, D., Lorenz, M., Kösters, F., Winter, C. & Lepper, R. Asymmetric morphodynamics of the Wadden Sea. Commun. Earth Environ. 6, 354 (2025).


DOI:  https://doi.org/10.1038/s43247-025-02340-y

 

This dataset contains:

- Yearly values in columns represent the elevation values mapped back from the quantile regression, along with min, mean, and max values derived from the conversion spread for each percentile (quantile) during the years,

- ESRI Shapefiles of the extended morphological units derived from Baptist et al. (2019) (see Shapefile properties for source) 

 

 

Abstract:

Shallow coastal systems with tidal flats and barrier islands are valuable assets to coastal protection and unique habitats with thriving biodiversity. Sea level rise threatens to diminish these systems unless sediment accretion compensates submergence. To quantify these dynamics for the world’s largest channel-shoal system, the Wadden Sea, an observed geomorphological time series was created and assessed over three decades. We found how (i) accretion-erosion was asymmetric from deep to shallow, (ii) topographic steepening occurred, and (iii) the morphological evolution was systematic across tidal basins. Peak accretion was observed below tidal low and above tidal high water, while the greatest erosion was found at intermediate subtidal elevations. Most intertidal areas accreted faster than sea level rise, and accretion was prominent at the channel-flat and flat-marsh interfaces. The simultaneous deepening of tidal channels leads to topographic steepening. Overall, the current net sediment import of the Wadden Sea is 19.7 Mm³/yr.

 

Additional Info:

In contrast to ordinary least squares (OLS) linear regression, which would describe the change of the mean elevation with time in our application, quantile regression describes the elevation change of the respective quantile over time. As the latter can be done for numerous quantiles, the temporal evolution of the elevation distribution can be statistically estimated to reveal detailed information on how the topography evolved. In statistical terms, quantile regression allows a separate behavior within the explanatory variable at different points in its distribution. This way, a different evolution of morphologic hotspots, e.g., the intertidal flats was detected, contrary to being masked in the OLS regression of averages.
DOI: 10.5281/zenodo.14535449
title: Elevation-related accretion-erosion rates in the period of 1996 to 2022 in the Wadden Sea

description: "In contrast to ordinary least squares (OLS) linear regression, which would describe the change of the mean elevation with time in our application, quantile regression describes the elevation change of the respective quantile over time. As the latter can be done for numerous quantiles, the temporal evolution of the elevation distribution can be statistically estimated to reveal detailed information on how the topography evolved. In statistical terms, quantile regression allows a separate behavior within the explanatory variable at different points in its distribution. This way, a different evolution of morphologic hotspots, e.g., the intertidal flats was detected, contrary to being masked in the OLS regression of averages."

 

Yearly values in columns represent the elevation values mapped back from the quantile regression, along with min, mean, and max values derived from the conversion spread for each percentile (quantile) during the years.
DOI: 10.5281/zenodo.14535985
title: Elevation-related accretion-erosion rates in the period of 1996 to 2022 in the Wadden Sea

description: Supplementary Information for:

Pineda Leiva, D., Lorenz, M., Kösters, F., Winter, C. & Lepper, R. Asymmetric morphodynamics of the Wadden Sea. Commun. Earth Environ. 6, 354 (2025).


DOI:  https://doi.org/10.1038/s43247-025-02340-y

 

This dataset contains:

- Yearly values in columns represent the elevation values mapped back from the quantile regression, along with min, mean, and max values derived from the conversion spread for each percentile (quantile) during the years,

- ESRI Shapefiles of the extended morphological units derived from Baptist et al. (2019) (see Shapefile properties for source) 

 

 

Abstract:

Shallow coastal systems with tidal flats and barrier islands are valuable assets to coastal protection and unique habitats with thriving biodiversity. Sea level rise threatens to diminish these systems unless sediment accretion compensates submergence. To quantify these dynamics for the world’s largest channel-shoal system, the Wadden Sea, an observed geomorphological time series was created and assessed over three decades. We found how (i) accretion-erosion was asymmetric from deep to shallow, (ii) topographic steepening occurred, and (iii) the morphological evolution was systematic across tidal basins. Peak accretion was observed below tidal low and above tidal high water, while the greatest erosion was found at intermediate subtidal elevations. Most intertidal areas accreted faster than sea level rise, and accretion was prominent at the channel-flat and flat-marsh interfaces. The simultaneous deepening of tidal channels leads to topographic steepening. Overall, the current net sediment import of the Wadden Sea is 19.7 Mm³/yr.

 

Additional Info:

In contrast to ordinary least squares (OLS) linear regression, which would describe the change of the mean elevation with time in our application, quantile regression describes the elevation change of the respective quantile over time. As the latter can be done for numerous quantiles, the temporal evolution of the elevation distribution can be statistically estimated to reveal detailed information on how the topography evolved. In statistical terms, quantile regression allows a separate behavior within the explanatory variable at different points in its distribution. This way, a different evolution of morphologic hotspots, e.g., the intertidal flats was detected, contrary to being masked in the OLS regression of averages.
DOI: 10.21233/eeax-9n83
title: Hexigten Banner ostracode surface sample dataset

description: Raw data for the Hexigten Banner ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bjhx-yy74
title: PC water chemistry dataset

description: Raw data for the PC water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.bgwb4g
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is LACM Vertebrate Collection",
 "TaxonKey is Lynx rufus (Schreber, 1777)"
 ]
}

 The dataset includes 143 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023358-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/yme9-0h38
title: ELA 99 (Enache et al 2011) water chemistry dataset

description: Raw data for the ELA 99 (Enache et al 2011) water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ymj2-zg64
title: Frontenac testate amoebae surface sample dataset

description: Raw data for the Frontenac testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.57745/8nu6ey
title: Repository_Part1.zip

description: Part 1 of 2 repository zip files
DOI: 10.57745/bf4zlt
title: README.txt

description: :unav
DOI: 10.57745/chnjqt
title: README.txt

description: :unav
DOI: 10.57745/lfcmef
title: Repository_Part2.zip

description: Part 2 of 2 repository zip files
DOI: 10.57745/qbig26
title: Repository_Part2.zip

description: Part 2 of 2 repository zip files
DOI: 10.57745/yb8fif
title: Repository_Part1.zip

description: Part 1 of 2 repository zip files
DOI: 10.21233/63x2-2k06
title: Rio Rubens Bog pollen dataset

description: Raw data for the Rio Rubens Bog pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4phf-qe38
title: Little Duck Lake pollen surface sample dataset

description: Raw data for the Little Duck Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15374360
title: Jülich Adler-Apotheke

description: Historical questionnaire/s  1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963[Funktion: Im Findbuch anzeigen]

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot  be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht  veröffentlicht werden dürfen).