cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9109079
title: Additional file 1: of Magic-BLAST, an accurate RNA-seq aligner for long and short reads

description: The supplement consists of a document with seven sections, successively 1- Bioinformatics (aligners and analysis programs), 2- datasets and length histograms, 3- introns discovered per coverage (ROC curves), 4- introns precision and recall, 5- iRefSeq results, 6- alignment mapping precision and recall measured by comparison to the benchmark, 7- alignment statistics and quality control. Additionally, a number of excel spread sheets with underlying data have been provided. All comments are welcome. (ZIP 3341 kb)
DOI: 10.6084/m9.figshare.9109079.v1
title: Additional file 1: of Magic-BLAST, an accurate RNA-seq aligner for long and short reads

description: The supplement consists of a document with seven sections, successively 1- Bioinformatics (aligners and analysis programs), 2- datasets and length histograms, 3- introns discovered per coverage (ROC curves), 4- introns precision and recall, 5- iRefSeq results, 6- alignment mapping precision and recall measured by comparison to the benchmark, 7- alignment statistics and quality control. Additionally, a number of excel spread sheets with underlying data have been provided. All comments are welcome. (ZIP 3341 kb)
DOI: 10.6084/m9.figshare.9109040
title: MOESM2 of Intranodal administration of mRNA encoding nucleoprotein provides cross-strain immunity against influenza in mice

description: Additional file 2: Table S1. Concentrations of cytokines within the BALF of vaccinated animals infected with H1N1 PR8 influenza. Values show the median concentration (pg/ml) with interquartile range (Q1â Q3) of the indicated cytokine or chemokine for the respective group. ND, not detected.
DOI: 10.6084/m9.figshare.9109043
title: Additional file 2 of Prediction and interpretation of miRNA-disease associations based on miRNA target genes using canonical correlation analysis

description: The predicted scores of diseases for the 100 new miRNAs. (XLS 427 kb)
DOI: 10.6084/m9.figshare.9109034
title: Additional file 1: of Poly(A) introduced upstream of the upstream pseudoknot domain of Tobacco mosaic virus led to sequence deletion after serial passaging in host plants

description: Table S1. Analysis of sequencing results of all cDNA clones in 10 rounds of serial passaging of TMV (24A + UPD) in N. benthamiana plants, showing the length of internal poly(A) tract, deletion/mutation of UPD and CP sequences in TMV (24A + UPD) viral genome. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9109037
title: Additional file 1 of Prediction and interpretation of miRNA-disease associations based on miRNA target genes using canonical correlation analysis

description: The extracted 60 canonical components. (TXT 25 kb)
DOI: 10.6084/m9.figshare.9109040.v1
title: MOESM2 of Intranodal administration of mRNA encoding nucleoprotein provides cross-strain immunity against influenza in mice

description: Additional file 2: Table S1. Concentrations of cytokines within the BALF of vaccinated animals infected with H1N1 PR8 influenza. Values show the median concentration (pg/ml) with interquartile range (Q1â Q3) of the indicated cytokine or chemokine for the respective group. ND, not detected.
DOI: 10.6084/m9.figshare.9109043.v1
title: Additional file 2 of Prediction and interpretation of miRNA-disease associations based on miRNA target genes using canonical correlation analysis

description: The predicted scores of diseases for the 100 new miRNAs. (XLS 427 kb)
DOI: 10.6084/m9.figshare.9109034.v1
title: Additional file 1: of Poly(A) introduced upstream of the upstream pseudoknot domain of Tobacco mosaic virus led to sequence deletion after serial passaging in host plants

description: Table S1. Analysis of sequencing results of all cDNA clones in 10 rounds of serial passaging of TMV (24A + UPD) in N. benthamiana plants, showing the length of internal poly(A) tract, deletion/mutation of UPD and CP sequences in TMV (24A + UPD) viral genome. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9109037.v1
title: Additional file 1 of Prediction and interpretation of miRNA-disease associations based on miRNA target genes using canonical correlation analysis

description: The extracted 60 canonical components. (TXT 25 kb)
DOI: 10.6084/m9.figshare.9109016
title: Additional file 1: of Implementation of a genomic medicine multi-disciplinary team approach for rare disease in the clinical setting: a prospective exome sequencing case series

description: Table S1. Membership of GM-MDT. Table S2. Description of cases where exome sequencing completed including demographics, phenotyping and results. Table S3. Estimation of costs for GM-MDT (A) Time and costs for the MDT over the 10 month period; (B) Sensitivity analysis on MDT costs. Table S4. Exome sequencing and analysis costs. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.9109016.v1
title: Additional file 1: of Implementation of a genomic medicine multi-disciplinary team approach for rare disease in the clinical setting: a prospective exome sequencing case series

description: Table S1. Membership of GM-MDT. Table S2. Description of cases where exome sequencing completed including demographics, phenotyping and results. Table S3. Estimation of costs for GM-MDT (A) Time and costs for the MDT over the 10 month period; (B) Sensitivity analysis on MDT costs. Table S4. Exome sequencing and analysis costs. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.9108977
title: Additional file 4: of Mice deficient in the C-terminal domain of TAR DNA-binding protein 43 develop age-dependent motor dysfunction associated with impaired Notch1−Akt signaling pathway

description: Table S3. Affected genes (&gt; 1.2 or
DOI: 10.6084/m9.figshare.9108977.v1
title: Additional file 4: of Mice deficient in the C-terminal domain of TAR DNA-binding protein 43 develop age-dependent motor dysfunction associated with impaired Notch1−Akt signaling pathway

description: Table S3. Affected genes (&gt; 1.2 or
DOI: 10.6084/m9.figshare.9108968
title: Additional file 3: of Mice deficient in the C-terminal domain of TAR DNA-binding protein 43 develop age-dependent motor dysfunction associated with impaired Notch1−Akt signaling pathway

description: Table S2. Genes downregulated (&gt; − 1.2 fold) in 700-day-old TDP-∆C mouse spinal cord. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.9108968.v1
title: Additional file 3: of Mice deficient in the C-terminal domain of TAR DNA-binding protein 43 develop age-dependent motor dysfunction associated with impaired Notch1−Akt signaling pathway

description: Table S2. Genes downregulated (&gt; − 1.2 fold) in 700-day-old TDP-∆C mouse spinal cord. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.9108962
title: Additional file 2: of Mice deficient in the C-terminal domain of TAR DNA-binding protein 43 develop age-dependent motor dysfunction associated with impaired Notch1â Akt signaling pathway

description: Table S1. Genes upregulated (&gt;â 1.2 fold) in 700-day-old TDP-â C mouse spinal cord. (XLSX 499 kb)
DOI: 10.6084/m9.figshare.9108962.v1
title: Additional file 2: of Mice deficient in the C-terminal domain of TAR DNA-binding protein 43 develop age-dependent motor dysfunction associated with impaired Notch1â Akt signaling pathway

description: Table S1. Genes upregulated (&gt;â 1.2 fold) in 700-day-old TDP-â C mouse spinal cord. (XLSX 499 kb)
DOI: 10.6084/m9.figshare.9108893
title: Additional file 2: of Effects of an over-the-counter lactic-acid containing intra-vaginal douching product on the vaginal microbiota

description: Clinical and microbioligical outcomes. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.9108893.v1
title: Additional file 2: of Effects of an over-the-counter lactic-acid containing intra-vaginal douching product on the vaginal microbiota

description: Clinical and microbioligical outcomes. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.9108842
title: Additional file 2: of Six weeks of strength endurance training decreases circulating senescence-prone T-lymphocytes in cytomegalovirus seropositive but not seronegative older women

description: Figure S1. Training-induced changes in the absolute counts of naive and memory phenotypes stratified for CMV. Note: Data are median values with error bars representing 95%CI. CMV = cytomegalovirus. *p &lt; 0.05, increased significantly after exercise compared to baseline. Figure S2. The gating procedure and representative dot plots for the delineation of T-cell sub-populations by flow cytometry. Figure S2A (gating strategy), Figure S2B (representative plots for the strength endurance training group), Figure S2C (representative plots for the intensive strength training group) and Figure S2D (representative plots for the control group). (ZIP 625 kb)
DOI: 10.6084/m9.figshare.9108842.v1
title: Additional file 2: of Six weeks of strength endurance training decreases circulating senescence-prone T-lymphocytes in cytomegalovirus seropositive but not seronegative older women

description: Figure S1. Training-induced changes in the absolute counts of naive and memory phenotypes stratified for CMV. Note: Data are median values with error bars representing 95%CI. CMV = cytomegalovirus. *p &lt; 0.05, increased significantly after exercise compared to baseline. Figure S2. The gating procedure and representative dot plots for the delineation of T-cell sub-populations by flow cytometry. Figure S2A (gating strategy), Figure S2B (representative plots for the strength endurance training group), Figure S2C (representative plots for the intensive strength training group) and Figure S2D (representative plots for the control group). (ZIP 625 kb)
DOI: 10.6084/m9.figshare.9108833
title: Additional file 1: of Six weeks of strength endurance training decreases circulating senescence-prone T-lymphocytes in cytomegalovirus seropositive but not seronegative older women

description: Table S1. Linear regression analysis of the association between the levels of baseline CMV IgG and the absolute counts of the senescence-prone T-cells, adjusted for age. Note: CMV = cytomegalovirus; SEB = standard error of the unstandardized regression coefficient. Table S2. Linear regression analysis of the association between the levels of baseline CMV IgG and the proportion of the senescence-prone T-cells, adjusted for age. Note: CMV = cytomegalovirus; SEB = standard error of the unstandardized regression coefficient. Table S3. Percentage and absolute counts of T-cell subsets at baseline in the different intervention groups with respect to CMV serostatus. Note: The values denote median (Interquartile range). CMV = cytomegalovirus; SPC = senescence-prone cells; IST = intensive strength training; SET = strength-endurance training; CON = control. T-cell subsets were expressed as percentages within the CD3 + CD8+ or CD3 + CD8â T-cells or absolute number of cells in peripheral blood (cells/ÎźL). aResults of Kruskal-Wallis test. Table S4. Training-induced changes in the absolute counts of CD8â T-cell phenotypes at 6 weeks compared to baseline among the different intervention groups in CMV seropositive participants. Table S5. Training-induced changes in the absolute counts of T-cell subsets among the different intervention groups in CMV seronegative participants. Table S6. Training-induced changes in the percentage of T-cell subsets among the different intervention groups in CMV seronegative participants. Table S7. Detailed description of exercise interventions. Note: 1RM = one repetition maximum. (ZIP 102 kb)
DOI: 10.6084/m9.figshare.9108827
title: Additional file 4: of Primary ciliary dyskinesia in Japan: systematic review and meta-analysis

description: Summary of EM findings in the present study with other international literature data. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.9108833.v1
title: Additional file 1: of Six weeks of strength endurance training decreases circulating senescence-prone T-lymphocytes in cytomegalovirus seropositive but not seronegative older women

description: Table S1. Linear regression analysis of the association between the levels of baseline CMV IgG and the absolute counts of the senescence-prone T-cells, adjusted for age. Note: CMV = cytomegalovirus; SEB = standard error of the unstandardized regression coefficient. Table S2. Linear regression analysis of the association between the levels of baseline CMV IgG and the proportion of the senescence-prone T-cells, adjusted for age. Note: CMV = cytomegalovirus; SEB = standard error of the unstandardized regression coefficient. Table S3. Percentage and absolute counts of T-cell subsets at baseline in the different intervention groups with respect to CMV serostatus. Note: The values denote median (Interquartile range). CMV = cytomegalovirus; SPC = senescence-prone cells; IST = intensive strength training; SET = strength-endurance training; CON = control. T-cell subsets were expressed as percentages within the CD3 + CD8+ or CD3 + CD8â T-cells or absolute number of cells in peripheral blood (cells/ÎźL). aResults of Kruskal-Wallis test. Table S4. Training-induced changes in the absolute counts of CD8â T-cell phenotypes at 6 weeks compared to baseline among the different intervention groups in CMV seropositive participants. Table S5. Training-induced changes in the absolute counts of T-cell subsets among the different intervention groups in CMV seronegative participants. Table S6. Training-induced changes in the percentage of T-cell subsets among the different intervention groups in CMV seronegative participants. Table S7. Detailed description of exercise interventions. Note: 1RM = one repetition maximum. (ZIP 102 kb)
DOI: 10.6084/m9.figshare.9108827.v1
title: Additional file 4: of Primary ciliary dyskinesia in Japan: systematic review and meta-analysis

description: Summary of EM findings in the present study with other international literature data. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.9108806
title: Additional file 1: of Primary ciliary dyskinesia in Japan: systematic review and meta-analysis

description: The details of the search strategy (MEDLINE, EMBASE, and Japana Centra Revuo Medicina in Japanese). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9108695
title: Labels.txt

description: A simple dataset of 100 floating point numbers that can be used for beginners and for academic projects that are simple
DOI: 10.6084/m9.figshare.9108695.v1
title: Labels.txt

description: A simple dataset of 100 floating point numbers that can be used for beginners and for academic projects that are simple
DOI: 10.6084/m9.figshare.9108614
title: Raw data and R code for Yin et al 2019 Ecol Lett

description: Raw data and R code for Yin et al 2019 Ecol Lett "Transgenerational effects benefit offspring across diverse environments: a meta-analysis in plants and animals"
DOI: 10.6084/m9.figshare.9108602
title: Transaction Log Data for Analyzing the Abnormal behaviors in The Financial Domain

description: In recent years, we have been exploring computational models to classify bank accounts in combating illegal pyramid selling. The department of economic investigation provides us with plenty of transaction data of real bank accounts. An account contains a lot of transaction records, each of which includes bilateral transaction accounts, timestamp, amount of money and transaction direction, etc. We sample out the transaction records belonging to 10145 bank accounts to form out dataset for training our model. There are 9270 normal accounts and 875 accounts involving a MLM organization respectively. The number of transaction records generated by the normal accounts run up to 6732730 and the fraud records created by MLM members amount to 275804 rows. These MLM members are manually annotated as ``illegal'' by economic investigators. Before training the models, we filtered out some noisy data, i.e. deleting the duplicate records, incomplete records and the records whose transaction amounts no more than 50. Therefore, 1371914 records is filtered out from the set of normal accounts' transaction records and 91341 records created by illegal accounts are deleted. In general, more than 5 million transaction records are used after denoising.
DOI: 10.6084/m9.figshare.9108584
title: adina-data-stamps

description: adina-data-stamps
DOI: 10.6084/m9.figshare.9108584.v1
title: adina-data-stamps

description: adina-data-stamps
DOI: 10.6084/m9.figshare.9108593
title: Supporting Material Botswana Karoo for Bordy (2020) Geol Journal DOI:10.1002/gj.3751

description: <b>Borehole A–P. </b>Detailed sedimentary logs measured in the sixteen Karoo borehole cores in the Orapa area. of central Botswana. The logs document the following properties of the sedimentary facies: lithology, bed thickness, nature of the bedding contact (gradational, sharp or erosional), grain size variations in bed, sedimentary structures, colour, macroscopic carbonaceous content, and bioturbation structures (invertebrate trace fossils and rootlets). Each bed was assigned a facies code based on grain size and sedimentary structures (Miall, 1996). <br> <b>CORE PHOTOS BOREHOLE A–P. </b>Core photographs of the sixteen borehole cores in the Orapa area. Core box numbers are recorded at the relevant interval in the sedimentary logs (see above). <br><b>SM TABLE 1</b>. Summary of the lithological characteristics of the formally accepted lithostratigraphic units in the Lower Karoo Supergroup in the southeastern area of the Central Kalahari Sub-basin and northeast Botswana (tables are based on Smith, 1984). U = unconformable; C = conformable.<br><b>SM FIGURE 1 </b>Palaeocurrent rose diagrams derived from foresets measurements of cross-bedded strata in the Kamotaka and Morupule formations. <br><b>SM FIGURE 2 </b>Variations in lithology (<b>a–d)</b> and sandstone grain size (<b>e–h</b>) in the Ecca Group formations in the boreholes in the Orapa area. Values are in percentages. Note that claystone, siltstone, coaly mudstone, carbonaceous mudstones as well as coal are undifferentiated and listed under mudstone.<br>
DOI: 10.6084/m9.figshare.9108530
title: WordEmbedding.txt

description: This dataset is a simple text file that can be used for academical purposes and for first projects that are quite simple and do not require massive amounts of data.
DOI: 10.6084/m9.figshare.9108530.v1
title: WordEmbedding.txt

description: This dataset is a simple text file that can be used for academical purposes and for first projects that are quite simple and do not require massive amounts of data.
DOI: 10.6084/m9.figshare.9108593.v3
title: Supporting Material Botswana Karoo for Bordy (2020) Geol Journal DOI:10.1002/gj.3751

description: <b>Borehole A–P. </b>Detailed sedimentary logs measured in the sixteen Karoo borehole cores in the Orapa area. of central Botswana. The logs document the following properties of the sedimentary facies: lithology, bed thickness, nature of the bedding contact (gradational, sharp or erosional), grain size variations in bed, sedimentary structures, colour, macroscopic carbonaceous content, and bioturbation structures (invertebrate trace fossils and rootlets). Each bed was assigned a facies code based on grain size and sedimentary structures (Miall, 1996). <br> <b>CORE PHOTOS BOREHOLE A–P. </b>Core photographs of the sixteen borehole cores in the Orapa area. Core box numbers are recorded at the relevant interval in the sedimentary logs (see above). <br><b>SM TABLE 1</b>. Summary of the lithological characteristics of the formally accepted lithostratigraphic units in the Lower Karoo Supergroup in the southeastern area of the Central Kalahari Sub-basin and northeast Botswana (tables are based on Smith, 1984). U = unconformable; C = conformable.<br><b>SM FIGURE 1 </b>Palaeocurrent rose diagrams derived from foresets measurements of cross-bedded strata in the Kamotaka and Morupule formations. <br><b>SM FIGURE 2 </b>Variations in lithology (<b>a–d)</b> and sandstone grain size (<b>e–h</b>) in the Ecca Group formations in the boreholes in the Orapa area. Values are in percentages. Note that claystone, siltstone, coaly mudstone, carbonaceous mudstones as well as coal are undifferentiated and listed under mudstone.<br>
DOI: 10.6084/m9.figshare.9108593.v2
title: Supporting Material Botswana Karoo Bordy Geol Journal

description: <b>Borehole A–P. </b>Detailed sedimentary logs measured in the sixteen Karoo borehole cores in the Orapa area. of central Botswana. The logs document the following properties of the sedimentary facies: lithology, bed thickness, nature of the bedding contact (gradational, sharp or erosional), grain size variations in bed, sedimentary structures, colour, macroscopic carbonaceous content, and bioturbation structures (invertebrate trace fossils and rootlets). Each bed was assigned a facies code based on grain size and sedimentary structures (Miall, 1996). <br> <b>CORE PHOTOS BOREHOLE A–P. </b>Core photographs of the sixteen borehole cores in the Orapa area. Core box numbers are recorded at the relevant interval in the sedimentary logs (see above). <br><b>SM TABLE 1</b>. Summary of the lithological characteristics of the formally accepted lithostratigraphic units in the Lower Karoo Supergroup in the southeastern area of the Central Kalahari Sub-basin and northeast Botswana (tables are based on Smith, 1984). U = unconformable; C = conformable.<br><b>SM FIGURE 1 </b>Palaeocurrent rose diagrams derived from foresets measurements of cross-bedded strata in the Kamotaka and Morupule formations. <br><b>SM FIGURE 2 </b>Variations in lithology (<b>a–d)</b> and sandstone grain size (<b>e–h</b>) in the Ecca Group formations in the boreholes in the Orapa area. Values are in percentages. Note that claystone, siltstone, coaly mudstone, carbonaceous mudstones as well as coal are undifferentiated and listed under mudstone.<br>
DOI: 10.6084/m9.figshare.9108503
title: Spurgeon UO2 PNAS Data Archive

description: Original data pertaining to the manuscript "Nanoscale Oxygen Defect Gradients in UO<sub>2+x</sub> Surfaces," by Steven R. Spurgeon, Michel Sassi, Colin Ophus, Joanne E. Stubbs, Eugene S. Ilton, and Edgar C. Buck, published in the Proceedings of the National Academy of Sciences. Files include original scanning transmission electron microscope images, electron energy loss spectroscopy data, density functional theory calculations, and multislice image simulations.
DOI: 10.6084/m9.figshare.9108491
title: Laporte et al. 2019

description: Data repository for publication, data backup
DOI: 10.6084/m9.figshare.24921549
title: Data Source.xlsxComputational calculation for optimized structure coordinates

description: The endeavor to enhance utility of organic molecular cages involves the evolution of them into higher-level chiral superstructures with self-similar, presenting a meaningful yet challenging. In this work, 2D tri-bladed propeller-shaped triphenylbenzene serves as building blocks to synthesize a racemic 3D tri-bladed propeller-shaped helical molecular cage. This cage, in turn, acts as a building block for a pair of higher-level 3D tri-bladed chiral helical molecular cages, featuring multilayer sandwich structures and displaying elegant characteristics with self-similarity in discrete superstructures at different levels. The evolutionary procession of higher-level cages reveals intramolecular self-shielding effects and exclusive chiral narcissistic self-sorting behaviors. Enantiomers higher-level cages can be interconverted by introducing an excess of corresponding chiral cyclohexanediamine. In the solid state, higher-level cages self-assemble into supramolecular architectures of <i>L</i>-helical or <i>D</i>-helical nanofibers, achieving the scale transformation of chiral characteristics from chiral atoms to microscopic and then to mesoscopic levels.