cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.525c1/1
title: Data and r-code

description: Variable names are explained in the data file folder.
DOI: 10.5061/dryad.5d44q/1
title: Ficedula hybrid males reproductive success

description: This file describes data collected on hybrid males in the field from 2010 to 2012 on the island of Öland, Sweden. It gives information on the nestbox where the bird was breeding, his species, the genetic species after genotyping, the species of the female the hybrid male paired with, information of previous chicks recorded for those females, the number of chicks in the nests of hybrid males and information on the hybrid male's paternity, the number of unhatched eggs collected, the presence or absence of sperm on the perivitelline layer of unhatched eggs and the presence/absence of sperm in the ejaculates. DNA analyses were performed from blood samples, ejaculates and unhatched eggs were preserved in formalin and the perivitelline layer of unhatched eggs was scanned for sperm using fluorescence microscopy.
DOI: 10.5061/dryad.5fn46/1
title: Data from: A strong test of the Maximum Entropy Theory of Ecology

description: This data product include Python code to reproduce the analyses in A strong test of the Maximum Entropy Theory of Ecology (Xiao et al.) with a processed subset of datasets included in the paper.
DOI: 10.5061/dryad.5p7s0/1
title: Saint_John_Genotype_data

description: File contains SNP genotypes for the River Saint John Atlantic salmon strain and their wild conspecifics.
DOI: 10.5061/dryad.5p7s0/2
title: River Burrishoole Genotype_data

description: File contains SNP genotype data for River Burrishoole Atlantic salmon strain and their wild conspecifics.
DOI: 10.5061/dryad.5p7s0/3
title: Vindel Genotype_data

description: File contains SNP genotype data for River Vindel/Ume Atlantic salmon strain and and their wild conspecifics.
DOI: 10.5061/dryad.619gd/1
title: Banding_data_AmNat53974
DOI: 10.5061/dryad.619gd/2
title: GRT_data_AmNat53974
DOI: 10.5061/dryad.7k14q/15
title: Table S6

description: Lagrange analysis: geographic species distribution, adjacency matrix and allowed ranges
DOI: 10.5061/dryad.7k14q/17
title: mtDNA_BEAST_input_file_Mlibyca_crown

description: Example BEAST control file with Macaca libyca used as crown macaque calibration point. The file contains among other information input for substitution models.
DOI: 10.5061/dryad.7k14q/18
title: mtDNA_RaxML_input_with_patitioning_scheme
DOI: 10.5061/dryad.7m621/2
title: Genotypes of M. parishii x M. lewisii F2 mapping population

description: Genotypes for the LPF2 hybrids used for linkage map construction, organized with individuals in rows and markers in columns. Marker names are as given in the paper (e = MgSTS). These individuals are a subset of a larger mapping population intended for QTL mapping, so individuals are numbered 1-96 and 480-576 despite n = 192.
DOI: 10.5061/dryad.8fc60/5
title: parus_maj_simulation

description: R code to run the simulation model presented in the paper. Code is fully commented with instructions and explanations.
DOI: 10.5061/dryad.f6n8s/1
title: Supplementary material

description: Supplementary material for systematic biology submission
DOI: 10.5061/dryad.ff749/10
title: Maximum likelihood bootstrap tree for matrix “Allsites_alltaxa” analyzed with linked branch lengths.
DOI: 10.5061/dryad.ff749/11
title: Maximum likelihood bootstrap tree for matrix “Allsites_alltaxa” analyzed with unlinked branch lengths.
DOI: 10.5061/dryad.ff749/12
title: Most parsimonious tree for matrix “Allsites_alltaxa”, Winclada tree file.
DOI: 10.5061/dryad.ff749/13
title: Maximum likelihood bootstrap tree for matrix “Allsites_alltaxa” with Rhabdadenia excluded, linked branch lengths.
DOI: 10.5061/dryad.ff749/14
title: Maximum likelihood bootstrap tree for matrix “Allsites_alltaxa” with Rhabdadenia excluded, unlinked branch lengths.
DOI: 10.5061/dryad.ff749/15
title: Most parsimonious trees for matrix “Allsites_alltaxa” with Rhabdadenia excluded, Winclada tree file.
DOI: 10.5061/dryad.ff749/7
title: RaxML exclude file for 12 plastome, 144,864 base pair alignment; 1065 segments excluded based on GBLOCKS analysis.
DOI: 10.5061/dryad.ff749/8
title: RaxML input matrix “Allsites_alltaxa”

description: Anodendron included; 125,369 aligned base pairs, undetermined and ambiguously aligned sites identified by GBLOCKS removed; Phylip format.
DOI: 10.5061/dryad.ff749/9
title: RaxML partition file for matrix “Allsites_alltaxa”

description: Anodendron included, 125,369 aligned base pairs, undetermined and ambiguously aligned sites identified by GBLOCKS removed.
DOI: 10.5061/dryad.g0q01/1
title: Microcsopy data for aggregation experiments

description: Data was collected by laboratory experiments, spiking T. gondii and surrogate microspheres into seawater samples. coloumn headings include Jar (treatment) number, replicate number, membrane replicate number (three per replicate), and raw counts of each particle type (DG surrogate, GB surrogate, and T. gondii oocysts)
DOI: 10.5061/dryad.g0q01/2
title: Image J aggregate dimensions - aggregation experiments

description: Data contains long and short axes as well as volume derived from right cylinder and ellipsoid equations for the macroaggregates in jars used for aggregation experiments. Columns include treatment type, replciate number, number of aggregates, and corresonding long axis, short axis, and volume of each aggregate. Data was obtained using the software Image J.
DOI: 10.5061/dryad.gt74m/1
title: final “dataset A” with 6122 bp

description: The final “dataset A” contained five nuclear loci (ENC1: 698 bp, Ptr: 691 bp, SH3PX3: 681 bp, Tmo4c4: 425 bp, S7 intron: 508 bp) and four partial mitochondrial fragments (12S: 350 bp, 16S: 522 bp, 12S/16S: 1239 bp (originally 1295 bp, 56 bp were excluded due to alignment ambiguities), ND2: 1008 bp).
DOI: 10.5061/dryad.hk2v3/1
title: Ontogenetic allometry data

description: Data used for analysis of ontogenetic allometry assessing when in development variation in variation in facial morphology arises.
DOI: 10.5061/dryad.hn02g/1
title: Supplemental Data Table 1

description: Detailed locality information of the pantolestid (Eutheria; Mammalia) specimens from the late middle Tiffanian (Ti4) Roche Percée local fauna, Ravenscrag Formation, Saskatchewan.
DOI: 10.5061/dryad.hn02g/2
title: Supplemental Data Table 2

description: Detailed locality information of the pantolestid (Eutheria; Mammalia) specimens from the late middle Tiffanian (Ti4) Roche Percée local fauna, Ravenscrag Formation, Saskatchewan.
DOI: 10.5061/dryad.hn02g/3
title: Supplemental Data Table 3

description: Measurements of the upper dentition of newly described pantolestids (Eutheria; Mammalia) from the late middle Tiffanian (Ti4) Roche Percée local fauna, Ravenscrag Formation, Saskatchewan. A solid line indicates that the measurement could not be determined.
DOI: 10.5061/dryad.j015n/9
title: fish-nexus-file-for-mrbayes.nexus.gz

description: NEXUS-formatted alignment file for use with MRBAYES.
DOI: 10.5061/dryad.j6q71/1
title: Torquato_et-al_2014_G64-WING-IMAGES

description: Images of all G64 female wings. Note that wing images are named after each specimen listed in the excel file (Torquato_et-al_2014_Measurements.xlsx).
DOI: 10.5061/dryad.j6q71/2
title: Torquato_et-al_2014_Measurements

description: Excel file containing all wing measurements, trichome counting and cellular estimates. All variables have the same name from the original paper. For further details on each variable, please refer to the original paper.
DOI: 10.5061/dryad.j6q71/3
title: Torquato_et-al_2014_G64-TRICHOME-IMAGES

description: Trichome images for each G64 female wing. Trichome images are also named after each specimen listed in the excel file (Torquato_et-al_2014_Measurements.xlsx). But note that trichome images have an extra last digit associated with the intervein region (IVR) within which the given image was taken: 1 = IVRA; 2 = IVRB; 3 = IVRC; 4 = IVRD; 5 = IVRE.
DOI: 10.5061/dryad.kk34s/1
title: Townsend and Jamieson data
DOI: 10.5061/dryad.mg54p/1
title: Data_kusumoto_et_al_JPE

description: The information of 5,149 vegetation plots across Japanese archipelago, including geographic locations, plot area, elevation, slope inclination, forest types (unmanaged forest = UF; previously clearcut forest = CF), forest zones, species richness, forest age relative to the age of unmanaged forest in the each vegetation zone, and standardized effect size (SES) of functional structure indices for each functional trait. For tree species, community mean (CM), functional richness (FRic), functional divergence (FDiv) were calculated for specific leaf area (SLA), leaf carbon content (LC), leaf nitrogen content (LN), wood density (WD), maximum height (Hmax), flower size (FLsize) and fruit size (FRsize). For herbaceous species, the three indices were calculated for leaf area (LA), Hmax, FLsize and FRsize. These indices were calculated only for the plots containing two or more species.
DOI: 10.5061/dryad.nt898.2/1.1
title: baculum (absent/present) data

description: morphology of absence/presence of a baculum in mammals.
DOI: 10.5061/dryad.nt898.2/2.1
title: Mammal Phylogeny

description: Mammal phylogeny published by dos Reis et al. (2012) Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny Proceedings of the Royal Society B: Biological Sciences, The Royal Society, 2012, 279, 3491-3500
DOI: 10.5061/dryad.nt898.2/3.1
title: GraphicalModels_Example_1a

description: RevBayes example file for analysis shown in Figure 1.a.
DOI: 10.5061/dryad.nt898.2/4.1
title: GraphicalModels_Example_1b

description: RevBayes example file for analysis shown in Figure 1.b.
DOI: 10.5061/dryad.nt898.2/5.1
title: GraphicalModels_Example_2

description: RevBayes example file for analysis shown in Figure 2.
DOI: 10.5061/dryad.nt898.2/6
title: Supplementary Information

description: Probabilistic Graphical Model Representation inPhylogenetics supplementary information, including additional phylogenetic graphical models and RevBayes implementation and examples.
DOI: 10.5061/dryad.p2n2d/1
title: SupMat

description: The supplemental material accompanying the study contains the word lists of all 195 languages, upon which the reconstruction of the weighted network was based, and all essential results in form of text files, including the network, a detailed list and description of all inferred communities, and additional statistics regarding the languages.
DOI: 10.5061/dryad.pb637/1
title: Supplemental Data 1

description: List of previous Early Cretaceous aporrhaid records from South America—excluding Argentina—and Antarctica.
DOI: 10.5061/dryad.rr062/1
title: K_marmoratus_receptor_Data
DOI: 10.5061/dryad.rr65n/3
title: Data and resulting phylogenetic tree of H. erato and H. melpomene involving Bayesian analysis of SNPs from the 515 - 580 KB peak of highest association

description: This datafile involved extracting the most reliable SNPS from the highest peak of association from 515-580KB. Automated alignments of fragments from these region (see melperato_alignedfragsD454to742KB_DATA.nex) were manually adjusted to improve alignments, fragments were concatenated, and SNPS with invariant sites and &gt;20% missing data were removed. This was used for a Bayesian analysis of sequences from the highest peak involving both H. erato and H. melpomene. This nexus formatted file includes Bayes block and the resulting consensus Bayesian tree.
DOI: 10.7925/drs1.ucdlib_31423
title: 37 Dawson Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1790.
description: Dublin City Council, Record of Protected Structures (2010), no. 2267
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31429
title: 39 Dawson Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1918.
description: Dublin City Council, Record of Protected Structures (2010), no. 2269
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31435
title: 41 Dawson Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1910.
description: Dublin City Council, Record of Protected Structures (2010), no. 2272
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31438
title: 43 Dawson Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1820.
description: Dublin City Council, Record of Protected Structures (2010), no. 2273
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31444
title: 45 Dawson Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1815.
description: Dublin City Council, Record of Protected Structures (2010), no. 2275
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31450
title: 47 Dawson Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1825.
description: Dublin City Council, Record of Protected Structures (2010), no. 2276
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31456
title: 48-50 Dawson Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1990.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31462
title: 51b Dawson Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground, constructed 1810.
description: Dublin City Council, Record of Protected Structures (2010), no. 2278
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31465
title: 51c Dawson Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground, constructed 1810.
description: Dublin City Council, Record of Protected Structures (2010), no. 2279
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.0h160/3
title: 2012 Data

description: Contains data from the 2012 field season, including bat, moth, and weather variables.
DOI: 10.5061/dryad.120f8/1
title: Pyriglena leuconota

description: nexus file with sequences of mtDNA ND2
DOI: 10.5061/dryad.16h1t/1
title: TLR2_Borrelia

description: Borrelia infection status of adult bank voles, their TLR2 genotype and sex
DOI: 10.5061/dryad.18b1k/1
title: Lepidoptera_subsample3_Garli

description: File contains alignement of sequence data in nexus format
DOI: 10.5061/dryad.18b1k/2
title: Data for Figure 1

description: Contains the average fluorescent values data used to construct Figure 1
DOI: 10.5061/dryad.1g7ns/1
title: WADE EVOLUTION SBT Migration Data to Gen 13

description: These are the data from which the two tables in "Phase III of Wright's Shifting Balance Process and the variance among demes in migration rate" by M. J. Wade were assembled. They were collected during the course of the Wade and Goodnight (1991) Science paper on Wright's Shifting Balance Theory
DOI: 10.5061/dryad.46tv4/1
title: CastrationData (version 1)

description: Data collected from video review of laboratory behavioral observations and entered into SPSS.
DOI: 10.5061/dryad.4df8k/1
title: Matute. Noisy Neighbors. Am. Nat. Raw data
DOI: 10.5061/dryad.4rp68/1
title: concat100_singleML_reroot

description: Organismal phylogeny
DOI: 10.5061/dryad.55t60/1
title: Figure1

description: R script computing and plotting the equilibrium states for a susceptible population, according to the rat's maximal birth rate, r, and the transmission rate, beta. (a) K = 25,000 rats, (b) K = 1,000 rats.
DOI: 10.5061/dryad.55t60/3
title: Figure 2

description: R script computing and plotting the equilibrium states for a rat population including resistant rats, according to the maximal birth rate of rats, r, and the transmission rate, beta. K = 25,000 rats.
DOI: 10.5061/dryad.55t60/4
title: Figure 2 - system dynamics

description: System dynamics (in C language) used in figure2.r (system (1) in the main text of the article).
DOI: 10.5061/dryad.6t794/1
title: Cape Race_final SNP data

description: SNP data for 446 individuals from 14 brook trout populations originating from Cape Race, Newfoundland, Canada
DOI: 10.5061/dryad.7fn18/1
title: Lats, longs and mean spire (ahell shape) index for each site

description: Geographic coordinates (decimal degrees ;wgs 84), and mean spire index (with standard error and standard deviation) for each sample site in the study area. Data collected in field with hand held GPS.
DOI: 10.5061/dryad.8k01q/1
title: Data from Figures 1-4

description: XLS File produced with LibreOffice Calc 4.0.2.2. Data were collected in a laboratory experimental evolution experiment.  Tab1: Presence/absence data for sensitive in the presence of +P518 and S536F.  Tab 2: Fixation events of sensitives in the presence of +P518 and S536F.  Tab 3: Frequency of sensitives in the presence of +P518 and S536F.  Tab 4: Competitive fitness of compensated +P518 and S536F lineages evolved in the absence of the sensitive competitor.
DOI: 10.5061/dryad.9g2p2/1
title: Killrate-data

description: This file contains for each study period ("pack-winter") data associated to kill rate and prey availabilty. It is the basis for the functional response models in the article. Variables are described in the ReadMe file.
DOI: 10.5061/dryad.9g2p2/2
title: weight_puppies

description: This file contains data on the time of marking and weight of all wolf pups marked during winters 2000 - 2013 by the Scandinavian Wolf Research Project. Variables are described in the ReadMe file.
DOI: 10.5061/dryad.9gf10/1
title: Individual genotype data

description: Tab-separated matrix of individual genotypes with individuals in rows and loci in columns. Each individual is coded as “population_year_individual”. NA: missing data.
DOI: 10.5061/dryad.d3d36/1
title: 6-year host-parasite network data

description: Matrices of fleas and gamasid mites collected from the bodies of small mammalian hosts in the vicinity of the city of Novosibirsk (Russia; 54°51'16.92"N, 83° 6'24.48"E) during a six-year (1982-1987) survey. Matrix values are the mean abundance of an ectoparasite species on a host species, per year. Hosts are in rows, Ectoparasites are in columns
DOI: 10.5061/dryad.ff749/16
title: Maximum likelihood bootstrap tree for matrix “Allsites_alltaxa” with Periploca excluded, linked branch lengths.
DOI: 10.5061/dryad.ff749/17
title: Maximum likelihood bootstrap tree for matrix “Allsites_alltaxa” with Periploca excluded, unlinked branch lengths.
DOI: 10.5061/dryad.ff749/18
title: Most parsimonious trees for matrix “Allsites_alltaxa” with Periploca excluded, Winclada format.
DOI: 10.5061/dryad.ff749/19
title: RaxML input matrix “Allsites_noAno”

description: RaxML input matrix “Allsites_noAno”, Anodendron excluded, 126,430 aligned base pairs, undetermined and ambiguously aligned sites identified by GBLOCKS removed, Phylip format.