cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.uzaq6x
title: Occurrence Download

description: A dataset containing 41267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysocolaptes guttacristatus (Tickell, 1833)"
 ]
}

 The dataset includes 41267 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0403127-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pfqpu
title: Occurrence Download

description: A dataset containing 1954 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Penelopides manillae",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 1954 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079072-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg7qgb
title: Occurrence Download

description: A dataset containing 24141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemidactylus frenatus Duméril & Bibron, 1836"
 ]
}

 The dataset includes 24141 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044190-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6b7b2
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dolichophis schmidti (Nikolsky, 1909)"
 ]
}

 The dataset includes 68 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009392-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pb6g6j
title: Occurrence Download

description: A dataset containing 67633554 species occurrences available in GBIF matching the query:
{
 "LifeStage" : [
 "is Adult"
 ]
}

 The dataset includes 67633554 records from 2411 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0403121-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34bjxe
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((24.70309 -24.67149,24.81069 -24.67149,24.81069 -24.5854,24.70309 -24.5854,24.70309 -24.67149))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, VU, CR)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115913-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.332k64
title: Occurrence Download

description: A dataset containing 4439 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence data set of Non-Timber Forest Products species for medicinal purposes in Zimbabwe’s biodiversity hotspots"
 ]
}

 The dataset includes 4439 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115912-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tykhmv
title: Occurrence Download

description: A dataset containing 44241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Delphinus delphis Linnaeus, 1758",
 "Geometry POLYGON ((-41.87389 34.38501, -41.35995 4.564686, -40.85081 3.844765, -40.01224 3.555543, -31.59194 3.392679, -31.48707 -0.5643124, -30.87842 -1.338797, -30.01148 -1.610772, -21.71082 -1.713223, -21.75013 -20.51568, -21.10361 -21.38787, -20.12226 -21.73372, 0.03412654 -21.8064, 12.00713 -21.75318, 13.69418 -21.62261, 14.57472 -20.93276, 14.84982 -19.86189, 14.15524 -18.2311, 13.57235 -17.33193, 13.7976 -15.88837, 14.38349 -14.04374, 15.20855 -13.04597, 15.54943 -11.85453, 15.51412 -10.42935, 15.04137 -9.310941, 15.10342 -8.090536, 14.59494 -6.766043, 14.82464 -5.734518, 14.395 -4.724886, 13.4876 -4.109605, 12.86587 -3.169516, 10.99129 -1.207545, 11.60011 -0.3116946, 11.62404 -0.2214176, 11.6432 -0.1300005, 11.65752 -0.03769778, 11.66696 0.05523342, 11.6715 0.1485346, 11.67114 0.2419463, 11.46027 1.339242, 11.48865 1.426449, 11.5125 1.515012, 11.53173 1.604694, 11.54632 1.695254, 11.5562 1.786449, 11.56137 1.878035, 11.5618 1.969766, 11.55283 2.108424, 11.69182 3.415735, 11.11451 5.142235, 10.2432 5.784308, 10.15532 5.811066, 10.05949 5.834479, 9.983715 5.898056, 9.883387 5.974806, 8.696584 6.579202, 8.592702 6.600223, 7.498519 6.445052, 7.416879 6.403018, 7.337517 6.35679, 7.260649 6.306491, 7.142946 6.249907, 6.897034 6.349124, 5.565337 7.767063, 4.260196 8.201467, 1.28083 8.005001, -2.170422 6.74718, -4.263913 7.042795, -4.364686 7.024509, -6.889788 6.632185, -6.973137 6.590072, -7.054176 6.5437, -7.132689 6.493196, -7.267627 6.433822, -7.718544 6.345905, -10.75371 8.597337, -11.30484 9.330112, -12.45445 11.24011, -13.02936 11.78756, -13.61891 13.12959, -13.75574 13.49542, -13.75675 13.58973, -14.15602 14.6315, -14.82554 15.17512, -14.42506 16.70452, -14.36894 16.85181, -14.19956 18.52224, -14.36973 19.74609, -14.4454 20.83825, -14.75533 21.61714, -13.9197 23.09101, -13.06722 24.08891, -12.73802 25.07355, -11.82348 25.89054, -11.46336 26.38165, -10.12374 26.99402, -8.530826 28.29936, -8.432914 28.43012, -7.619666 29.80537, -7.550068 31.09951, -7.493791 31.18258, -7.442662 31.2681, -7.068556 31.83936, -5.414513 32.6741, -5.311974 32.7661, -3.456341 35.43187, -3.432308 35.52523, -3.414302 35.6195, -3.402393 35.71441, -3.396636 35.8097, -3.391464 35.99438, -3.746162 37.00766, -3.820939 37.09476, -4.256947 38.12718, -5.387096 38.77825, -6.409231 39.15621, -6.414594 40.08673, -6.285435 41.41204, -6.320449 41.5564, -6.259578 42.81982, -7.07214 44.0355, -8.611002 44.73503, -19.10723 44.76426, -28.30699 44.71284, -37.44479 44.64366, -37.57821 44.64254, -37.71162 44.64142, -37.84503 44.64029, -42.70655 44.51638, -43.79192 43.91403, -44.16249 42.95714, -44.15802 42.85723, -43.81923 35.58569, -43.10275 34.75217, -41.87389 34.38501))"
 ]
}

 The dataset includes 44241 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115909-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efeuux
title: Occurrence Download

description: A dataset containing 36153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Solanum carolinense L."
 ]
}

 The dataset includes 36153 records from 218 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115908-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26935920
title: Treatment options for biliary tract cancer: unmet needs, new targets and opportunities from both physicians' and patients' perspectives

description: Biliary tract cancer (BTC) is a rare cancer with poor prognosis, characterized by considerable pathophysiological and molecular heterogeneity. While this makes it difficult to treat, it also provides targeted therapy opportunities. Current standard-of-care is chemotherapy ± immunotherapy, but several targeted agents have recently been approved. The current investigational landscape in BTC emphasizes the importance of biomarker testing at diagnosis. MDM2/MDMX are important negative regulators of the tumor suppressor p53 and provide an additional target in BTC (∼5–8% of tumors are <i>MDM2</i>-amplified). Brigimadlin (BI 907828) is a highly potent MDM2-p53 antagonist that has shown antitumor activity in preclinical studies and promising results in early clinical trials; enrollment is ongoing in a potential registrational trial for patients with BTC. Biliary tract cancer (BTC), an umbrella term for a number of tumor sub-types, is a rare cancer with a poor prognosis (5-year survival rate: 15% [1]). It is characterized by considerable pathophysiological and molecular heterogeneity, making it difficult to treat, but providing a number of potentially targetable genetic alterations. No targeted agents are approved in the first-line setting for patients with BTC; chemotherapy-based regimens with or without immunotherapy are the standard of care. Clinical trials into alternative immunochemotherapy regimens and <i>FGFR2</i> inhibitors are ongoing, which may impact on first-line treatment options in the future. Second-line treatment options are largely chemotherapy-based for patients without targetable mutations, or targeted agents against <i>FGFR2</i>, <i>IDH1</i>, <i>HER2</i>, <i>BRAF</i> V600E, <i>NTRK</i>, DNA damage repair genes, <i>KRAS</i> and <i>RET</i> aberrations, some of which are investigational. MDM2 is an endogenous negative regulator of p53, hence aberrations of the <i>MDM2</i> gene can result in inappropriate silencing of wild-type p53, potentially leading to tumorigenesis. <i>MDM2</i> amplification is observed in ∼5–8% of BTCs; <i>TP53</i> mutations are largely mutually exclusive. MDM2–p53 antagonists are in clinical development for the treatment of various hematologic and solid tumors. Brigimadlin, an MDM2–p53 antagonist currently in development in patients with BTC, has shown durable responses and no unexpected toxicities across two phase Ia/Ib studies in patients with solid tumors, including a number of patients with BTC. Comprehensive molecular testing is a key recommended in treatment guidelines for BTC. A PDF version of this infographic is available as supplemental material.
DOI: 10.6084/m9.figshare.26935920.v1
title: Treatment options for biliary tract cancer: unmet needs, new targets and opportunities from both physicians' and patients' perspectives

description: Biliary tract cancer (BTC) is a rare cancer with poor prognosis, characterized by considerable pathophysiological and molecular heterogeneity. While this makes it difficult to treat, it also provides targeted therapy opportunities. Current standard-of-care is chemotherapy ± immunotherapy, but several targeted agents have recently been approved. The current investigational landscape in BTC emphasizes the importance of biomarker testing at diagnosis. MDM2/MDMX are important negative regulators of the tumor suppressor p53 and provide an additional target in BTC (∼5–8% of tumors are <i>MDM2</i>-amplified). Brigimadlin (BI 907828) is a highly potent MDM2-p53 antagonist that has shown antitumor activity in preclinical studies and promising results in early clinical trials; enrollment is ongoing in a potential registrational trial for patients with BTC. Biliary tract cancer (BTC), an umbrella term for a number of tumor sub-types, is a rare cancer with a poor prognosis (5-year survival rate: 15% [1]). It is characterized by considerable pathophysiological and molecular heterogeneity, making it difficult to treat, but providing a number of potentially targetable genetic alterations. No targeted agents are approved in the first-line setting for patients with BTC; chemotherapy-based regimens with or without immunotherapy are the standard of care. Clinical trials into alternative immunochemotherapy regimens and <i>FGFR2</i> inhibitors are ongoing, which may impact on first-line treatment options in the future. Second-line treatment options are largely chemotherapy-based for patients without targetable mutations, or targeted agents against <i>FGFR2</i>, <i>IDH1</i>, <i>HER2</i>, <i>BRAF</i> V600E, <i>NTRK</i>, DNA damage repair genes, <i>KRAS</i> and <i>RET</i> aberrations, some of which are investigational. MDM2 is an endogenous negative regulator of p53, hence aberrations of the <i>MDM2</i> gene can result in inappropriate silencing of wild-type p53, potentially leading to tumorigenesis. <i>MDM2</i> amplification is observed in ∼5–8% of BTCs; <i>TP53</i> mutations are largely mutually exclusive. MDM2–p53 antagonists are in clinical development for the treatment of various hematologic and solid tumors. Brigimadlin, an MDM2–p53 antagonist currently in development in patients with BTC, has shown durable responses and no unexpected toxicities across two phase Ia/Ib studies in patients with solid tumors, including a number of patients with BTC. Comprehensive molecular testing is a key recommended in treatment guidelines for BTC. A PDF version of this infographic is available as supplemental material.
DOI: 10.25318/4110006801-eng
title: Exposure to an Indigenous language at home in the past 12 months, First Nations people living off reserve, Métis and Inuit, aged 1 to 5 years

description: Exposure to an Indigenous language at home in the past 12 months, First Nations people living off reserve, Métis and Inuit, aged 1 to 5 years, by gender, Canada, provinces and territories.
DOI: 10.15468/dl.zzhrw8
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phyllostachys nigra (Lodd. ex Lindl.) Munro",
 "Year 1974-2024"
 ]
}

 The dataset includes 289 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115914-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b76rw4
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cebuella pygmaea (Spix, 1823)"
 ]
}

 The dataset includes 782 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115915-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12671588
title: Collinear laser spectroscopy data of singly charged natural uranium isotopes

description: This dataset contain the raw data produced in an offline experiment at the IGISOL facility, University of Jyväskylä

Accelerator laboratory JYFL, using the Collinear Laser Spectroscopy (CLS) line to measure a set of  ten ionic transitions in 234,235,238U.
DOI: 10.5281/zenodo.13683516
title: hemidactylus_brookii_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.13683517
title: hemidactylus_brookii_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.12671587
title: Collinear laser spectroscopy data of singly charged natural uranium isotopes

description: This dataset contain the raw data produced in an offline experiment at the IGISOL facility, University of Jyväskylä

Accelerator laboratory JYFL, using the Collinear Laser Spectroscopy (CLS) line to measure a set of  ten ionic transitions in 234,235,238U.
DOI: 10.25318/4110006801-fra
title: Enfant exposé à une langue autochtone à la maison au cours des 12 derniers mois, les Premières Nations vivant hors réserve, Métis et Inuit, âgés de 1 à 5 ans

description: Enfant exposé à une langue autochtone à la maison au cours des 12 derniers mois, les Premières Nations vivant hors réserve, Métis et Inuit, âgés de 1 à 5 ans, selon le genre, Canada, provinces et territoires.
DOI: 10.6084/m9.figshare.26935753
title: 3D Intestinal Organoid Simulations

description: Contained within these files are the outcomes of simulations conducted as part of the "Mathematical and computational modelling of intestinal organoids: Analysis of 2D and 3D multi-scale agent-based models" thesis, focusing on the 3D model of intestinal organoids.
DOI: 10.6084/m9.figshare.26935753.v1
title: 3D Intestinal Organoid Simulations

description: Contained within these files are the outcomes of simulations conducted as part of the "Mathematical and computational modelling of intestinal organoids: Analysis of 2D and 3D multi-scale agent-based models" thesis, focusing on the 3D model of intestinal organoids.
DOI: 10.25574/00165
title: Chandra X-ray Observatory ObsId 00165

description: ACIS CHIP RESPONSE TO A CONTINUUM SOURCE
DOI: 10.15468/dl.gsrnvq
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phyllostachys nidularia Munro",
 "Year 1974-2024"
 ]
}

 The dataset includes 167 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115918-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25318/4110006901-eng
title: Number of persons by core housing need, tenure and First Nations people living off reserve, Métis and Inuit

description: Number of persons by core housing need, tenure, First Nations people living off reserve, Métis and Inuit, and gender, Canada, provinces and territories.
DOI: 10.25574/62447
title: Chandra X-ray Observatory ObsId 62447
DOI: 10.15468/dl.d3hk72
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is 2020_European Butterflies Group_1"
 ]
}

 The dataset includes 190 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115919-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6gsjy
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pleioblastus amarus (Keng) Keng f.",
 "Year 1974-2024"
 ]
}

 The dataset includes 115 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115920-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aev43w
title: Occurrence Download

description: A dataset containing 22137 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global compendium of Aedes albopictus occurrence"
 ]
}

 The dataset includes 22137 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115921-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddjjsx
title: Occurrence Download

description: A dataset containing 19929 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global compendium of Aedes aegypti occurrence"
 ]
}

 The dataset includes 19929 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115922-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26935510
title: HIF ligand-binding Metadynamics simulation

description: This dataset comprises pre-computed Metadynamics simulation to observe the ligand binding to the Hypoxia Inducible Factor (HIF) PAS-B domain, intended for use with the SOMMD (Self-Organizing Maps for Molecular Dynamics) R package. The files, including .xtc and .gro formats, serve as input data for analysis within a notebook designed to demonstrate the capabilities of the SOMMD R package.
DOI: 10.6084/m9.figshare.26935510.v1
title: HIF ligand-binding Metadynamics simulation

description: This dataset comprises pre-computed Metadynamics simulation to observe the ligand binding to the Hypoxia Inducible Factor (HIF) PAS-B domain, intended for use with the SOMMD (Self-Organizing Maps for Molecular Dynamics) R package. The files, including .xtc and .gro formats, serve as input data for analysis within a notebook designed to demonstrate the capabilities of the SOMMD R package.
DOI: 10.25318/4110006901-fra
title: Nombre de personnes selon besoins impérieux en matière de logement, le mode d'occupation et les Premières Nations vivant hors réserve, Métis et Inuit

description: Nombre de personnes selon besoins impérieux en matière de logement, le mode d'occupation, les Premières Nations vivant hors réserve, Métis et Inuit, et genre, Canada, provinces et territoires.
DOI: 10.15479/at:ista:17488
title: Bilateral interactions of optic-flow sensitive neurons coordinate course control in flies

description: Behavioural data for Pokusaeva, Satapathy et al. Relevant information can be found in hte 'README.txt' file.
DOI: 10.5281/zenodo.10974087
title: DiTEC-project/gigantic-dataset-1k

description: This is an outdated version. Please access the latest dataset with better support at 10.5281/zenodo.10974086.
DOI: 10.5281/zenodo.10974086
title: Large-Scale Multipurpose Benchmark Datasets For Assessing Data-Driven Deep Learning Approaches For Water Distribution Networks

description:  



Andres Tello*, Huy Truong*, Alexander Lazovik, Victoria Degeler. Large-Scale Multipurpose Benchmark Datasets For Assessing Data-Driven Deep Learning Approaches For Water Distribution Networks. Engineering Proceedings. 2024; 69(1):50. https://doi.org/10.3390/engproc2024069050


(*) Both authors contributed equally.

Update

(04/09/2024): Citation is updated.We have added headers for CSVs and auxiliary data (duration time, edge list, ordered names.. ) in the configuration file (JSON format). As such, corresponding INP files can be omitted when working with this version. The EXN network has been included in this version, so the total number of processed networks is 11.For more details, please read ZENODO_README.md.

Contact

For dataset-related questions: Huy Truong


For data acquisition: Andres Tello


If you use this dataset, please cite:

@article{tello2024largescale,    AUTHOR = {Tello, Andrés and Truong, Huy and Lazovik, Alexander and Degeler, Victoria},    TITLE = {Large-Scale Multipurpose Benchmark Datasets for Assessing Data-Driven Deep Learning Approaches for Water Distribution Networks},    JOURNAL = {Engineering Proceedings},    VOLUME = {69},    YEAR = {2024},    NUMBER = {1},    ARTICLE-NUMBER = {50},    URL = {https://www.mdpi.com/2673-4591/69/1/50},    ISSN = {2673-4591},    DOI = {10.3390/engproc2024069050}}