cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28861280.v2
title: Data for Field Surveys and Experiments-Sack&Selland.xlsm

description: Schistosomiasis is a devastating parasitic disease in which the infectious stage to humans is released by intermediate host snails. The Senegal River Basin (SRB) is a high-risk area for both urogenital and fecal human schistosomiasis and has extensive rice cultivation. However, occupational risk of schistosomiasis to people working in irrigated rice fields is not well established. We performed intermediate host snail surveys from 2022-2023 in rice fields and irrigation canals throughout the SRB. We discovered human schistosome-shedding snails in rice fields and adjacent irrigation canals during the rice growing and non-growing seasons, establishing a clear occupational exposure risk to rice farmers. Relative to the non-growing season, this risk was higher in the rice growing and harvest season when more people are in the rice fields. Rice-fish co-culturing might reduce this occupational risk to rice farmers if local fish species consume enough snail intermediate hosts to reduce <i>Schistosoma </i>transmission. Our predation trials revealed that local <i>Heterotis niloticus</i> and <i>Hemichromis</i> spp. fish consumed significant numbers of <i>Biomphalaria pfeifferi </i>and <i>Bulinus spp. </i>snails, and separate trials revealed that these same snail species exhibited only moderate avoidance and refuge use responses to fish chemical cues. These results indicate that there is exposure to <i>Schistosoma</i> parasites in rice fields in the SRB and introducing local fish to rice fields has promise for reducing this exposure as well as providing a protein source to rice farming families. We encourage future studies to more fully explore the benefits of rice-fish co-culturing in the West Africa.
DOI: 10.17632/gtnv5dwjk5
title: A Modular, Isolated High-Voltage Switch for Application in Ion Mobility Spectrometry

description: Ion mobility spectrometry is an emerging technology in trace gas analysis that has moved from typical safety and security applications to many other fields ranging from environmental and food quality monitoring to medicine and life sciences. Nevertheless, further dissemination, including the development of new instruments and the expansion into new fields of application requires the availability of the fundamental components of ion mobility spectrometers. For example, the electronics is essential for the analytical performance, but is only provided by specialized manufacturers due to specific requirements. In this paper, we present a modular, isolated high-voltage switch that can be operated at an isolated potential. The modular design enables tailoring its configuration to the required application. Each module can switch a voltage of up to 3 kV, and can be operated with an offset voltage of up to 7 kV. The switch has rise and fall times of less than 25 ns, making it suitable for a wide range of applications, e.g., in ion mobility spectrometry. Finally, the presented modular, isolated high-voltage switch was used in a push-pull configuration to generate the injection pulse of the ion gate. The new modular, isolated high-voltage switch shows similar performance compared to a commercially available high-voltage switch.

This dataset contains all files to build or redesign the modular, isolated high-voltage switch as described in the article published in HardwareX

Warning: Extreme attention is required when operating the modular, isolated high-voltage switch, as the electric potentials can be lethal. Therefore, the electronics presented here must only be used under the mandatory protective measures for electronics, and in particular for high-voltage electronics, and should only be operated by appropriately trained personnel. If working on the hardware the high-voltage plugs must be disconnected and the power supply must be turned off and de-energized! The contributors accept no liability for any work related to the modular, isolated high-voltage switch.
DOI: 10.6084/m9.figshare.24132840.v1
title: MidColumbia.zip - a large spatial stream network data set

description: large spatial stream network data set used in following publications,Isaak, D.J., Wenger, S.J., Peterson, E.E., Ver Hoef, J.M., Nagel, D.E., Luce, C.H., Hostetler, S.W., Dunham, J.B., Roper, B.B., Wollrab, S.P., Chandler, G.L., Horan,D.L., Parkes-Payne, S. 2017. The NorWeST Database and Modeled Summer Temperature Scenarios: Massive Crowd-sourcing and New Geospatial Tools Reveal Broad Climate Warming of Rivers and Streams in the Western U.S. Water Resources Research: 53(11): 9181–9205. DOI: 10.1002/2017WR020969.andVer Hoef, J.M., Dumelle, M., Higham, M., Peterson, E.E., and Isaak, D.J. 2023. Indexing and Partitioning the Spatial Linear Model for Large Data Sets. PLOS ONE 18(11): e0291906. PLOS ONE 18(11): e0291906<br><br>
DOI: 10.6084/m9.figshare.5128660.v1
title: Supplementary Material for: The <b><i>MTHFR</i></b> C677T Polymorphism Is Related to Plasma Concentration of Oxidized Low-Density Lipoprotein in Adolescents with Cardiovascular Risk Factors

description: <b><i>Aim:</i></b> The aim of this study was to investigate possible relationships among the A1298C (rs1801131) and C677T (rs1801133) polymorphisms in the methylenetetrahydrofolate reductase <i>(MTHFR)</i> gene and levels of homocysteine, vitamins B<sub>6</sub>, B<sub>12</sub>, folic acid and lipid profile, including oxidized low-density lipoprotein (ox-LDL), of adolescents at cardiovascular risk. <b><i>Methods:</i></b> We recruited 115 adolescents (10-19 years old), 58.3% (n = 67) female, from a public school in Brazil who underwent anthropometric, biochemical and genetic tests as well as food consumption evaluation. <b><i>Results:</i></b> An important prevalence of hyperhomocysteinemia (19.1%) and alterations in triacylglycerol (17.4%), total cholesterol (26.9%) and high-density lipoprotein (HDL) cholesterol (48.0%) concentrations were observed, as well as low vitamin B<sub>6</sub> concentrations (23.5%). The categorization of homocysteine concentrations into tertiles revealed significant differences in serum concentrations of folate, vitamin B<sub>12</sub> and HDL, waist circumference and intake of total and saturated fat among the tertiles. The presence of variant alleles regarding the <i>MTHFR</i> C677T polymorphism interfered with vitamin B<sub>6</sub> and ox-LDL cholesterol concentrations. There was a trend for higher waist circumference values in T carriers (C677T), but not in C carriers (A1298C). <b><i>Conclusions:</i></b> The <i>MTHFR</i> C677T allele was associated with higher plasma vitamin B<sub>6</sub> and ox-LDL compared to the CC genotype.
DOI: 10.6084/m9.figshare.1066804.v1
title: : Students that wrote in a specific period of time

description: Paper: A Domain Specific Language for Online Learning Competence Students that wrote in a specific period of time
DOI: 10.6084/m9.figshare.11410212.v1
title: MSB Gene Expression Variability

description: This is data collected for a Molecular Systems Biology publication.
DOI: 10.6084/m9.figshare.14602020.v1
title: Gene database of Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)

description: This work presents the gene database of Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Using annotated genome sequence downloaded from Genbank, an in-house MATLAB genome analysis software parsed the contents into a gene database comprising gene name, gene function, and gene sequence. Overall, the presented gene database of SARS-CoV-2 is fundamental to initiating studies in understanding the origins and pathogenic potential of this virus.
DOI: 10.6084/m9.figshare.28485227.v2
title: Data_File_ClinicalConsiderationsSRUS

description: Data for the paper: Analysing the Renal Vasculature Using Super-Resolution Ultrasound Imaging: Considerations for Clinical and Research Applications. Animal population: Rats.
DOI: 10.6084/m9.figshare.28682804.v1
title: N input effects on SOC

description: the relationship between a key component of the terrestrial carbon cycle (SOC) and nitrogen (N) input under environmental change
DOI: 10.17632/jwwd7jd7wc
title: Dataset of analysis of the large language model-powered chatbots’ advice on help to a non-breathing victim

description: This dataset contains results of evaluation of performance of the new Bing (Microsoft Corporation, Redmond, Washington, USA) and Bard (Google LLC, Mountain View, California, USA) large language model-powered chatbots in terms of quality of the chatbot-generated advice on how to give help to a non-breathing victim.
In May 2023, the chatbots were repeatedly inquired (20 times per the chatbot) “What to do if someone is not breathing?” (search language: English, search region: the United Kingdom). Additionally, the chatbots were requested to rate their original responses for compliance with the Resuscitation Council UK guidelines using a 10-point scale (from 1 “very low compliance” to 10 “very high compliance”); to report whether the responses contain any guidelines-inconsistent advice; and to correct the responses to ensure full compliance with the guidelines.
Original and corrected chatbots’ responses containing instructions on help to a non-breathing victim were manually assessed for compliance with the 2021 Resuscitation Council UK Guidelines on adult Basic Life Support [Perkins et al., 2021] using a predeveloped checklist. Adherence to the guidelines was rated for each item of the checklist as True (where checklist item wording was satisfied in full), Partially True (where checklist item wording was satisfied in part) or Not True (when the corresponding instruction was omitted from the chatbot response). 
Additionally, the chatbots’ responses were evaluated for number of sentences and for readability based on the Flesch-Kincaid Grade Level [Kincaid et al., 1975].
Content of the webpages referenced by the chatbots as a source for generating the responses was evaluated for quality using the same checklist.
DOI: 10.17632/vn6g9b6k8n
title: hnRNP K regulates mitochondrial apoptosis induced by porcine circovirus type 3 capsid protein

description: The detailed information on potential proteins interacting with PCV3 Cap identified by LC-MS/MS.
DOI: 10.6084/m9.figshare.11559369.v1
title: Data-submitted to JCLI-Zhang et al 2020

description: This is the source data for figure derived from unpublished paper submitted to Journal of Climate by Zhang et al. 2020;if you have any question, please contact Feng Tian (tianfeng777@hotmail.com)
DOI: 10.6084/m9.figshare.23996814.v3
title: Shared data_kuer's reception

description: It contained a translated version of the questionnaire the raw data (e.g., data collected from the questionnaire, coding information, word clusters).
DOI: 10.6084/m9.figshare.28218275.v1
title: Genome Assembly and Annotation of Phoebe zhennan

description: Genome Assembly and Annotation of Phoebe zhennan
DOI: 10.6084/m9.figshare.28899176.v1
title: A Thermal Photovoltaic and Power Beaming Approach

description: This research presents a robust and modular hybrid power generation system for Venusian surface missions, integrating thermophotovoltaic (TPV) technology, power beaming from aerial platforms, and radioisotope thermoelectric generators (RTGs). Venus's extreme environment-marked by temperatures exceeding 460°C, 92 bar atmospheric pressure, and highly corrosive sulfuric acid clouds-demands specialized material selection, thermal management, and failure mitigation strategies. Through rigorous modelling, component selection, and scenario testing, this system offers sustainable power for scientific payloads while minimizing mission risk.
DOI: 10.15468/dl.867fvx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-8.8018 33.6743,-9.0352 33.4562,-9.0352 28.8496,-0.0352 28.8496,-0.0352 36.4794,-0.2209 36.3968,-1.3537 36.1876,-1.6551 35.769,-2.0234 35.5842,-2.5138 35.6803,-2.6212 36.2387,-2.9881 36.451,-3.4424 36.249,-3.506 35.7605,-4.4004 35.671,-4.7609 35.8337,-4.8512 36.1709,-5.2296 36.4083,-6.2415 36.1841,-7.168 34.4152,-8.8018 33.6743))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013064-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.24328885.v2
title: MH-100K-Dataset

description: Dataset MH-100K, an extensive collection of Android malware information comprising 101,975 samples. It encompasses a main CSV file with valuable metadata, including the SHA256 hash (APK’s signature), file name, package name, Android’s official compilation API, 166 permissions, 24,417 API calls, and 250 intents.
DOI: 10.17632/r6m6zzvfp2
title: Financial data of selected listed companies in the Dhaka Stock Exchange (DSE)

description: This panel dataset contains the financial information of selected publicly traded non banking banking institutes listed in the Dhaka Stock Exchange (DSE) of Bangladesh. All data are compiled from the company annual reports. The currency of this dataset is Bangladeshi Taka (BDT). It also contains a exhaustive dataset of companies for the year 2017.
DOI: 10.6084/m9.figshare.21378213.v2
title: Quality assessment checklist for publications to be considered for review - Adapted from JBI and CASP

description: According to Whittemore & Knafl, two quality criterion instruments should be utilized during the review process to assure the authenticity, methodological quality, and informative value of the included research. The CASP tool and the JBI Critical Appraisal Tool each include a set of detailed questions to enhance the visualization of the data. A common checklist is adapted to simplify this complex comparison between the CASP tool and the JBI Critical Appraisal Tool. Each article can be assessed using the adapted checklist to analyze the articles clearly and succinctly. They were adjusted to include the essential criteria stated in both the CASP tool and the JBI Critical Appraisal Tool. The modified checklist includes a clear aim, methodology, design, recruitment, data collection, researcher-participant relations, participants and their voices, ethical considerations, data analysis and rigor, findings, and research value.
DOI: 10.6084/m9.figshare.27930906.v3
title: Datafile 3. BUSCO output

description: BUSCO output: 49 species annotated with multiple accession
DOI: 10.17632/4h6ttzh9bf
title: 3D-printed holes accuracy

description: The data relates different factors (3D Printing process: layer thickness, number of shells, printing speed; manufacturing sites: type of material, printer, slicing software; design: holes axes orientation angle; post-processing by medical decontamination ) and the dimensional accuracy of 3D-printed holes in PLA parts.
DOI: 10.6084/m9.figshare.27925317.v1
title: Appendix

description: The specific linearization methods of partial differential and bilinear terms and the decomposition process of primary problem.
DOI: 10.17632/ynz4zt54r4
title: Example AquaCrop output data

description: Example output files from AquaCrop simulation. For the output from AquaCrop standard GUI, there are 10 output files from one simulation (simulation1). For the output from AquaCrop standalone plug-in, there are a total of 18 output files originated from 6 simulations, carried out for 3 locations (location A, B, C) and under 2 climate models (model1, model2) each. Each simulation has 3 output files.
DOI: 10.6084/m9.figshare.10310696.v3
title: Animal Body Weight of Rabbit

description: The data of animal body weight changes among 4 groups tested
DOI: 10.6084/m9.figshare.19783498.v5
title: A comprehensive genomic and transcriptomic dataset of triple-negative breast cancers

description: Molecular subtyping of triple-negative breast cancer (TNBC) is essential for understanding the mechanisms and discovering actionable targets of this highly heterogeneous type of breast cancer. We previously performed a large single-center and multiomics study consisting of genomics, transcriptomics, and clinical information from 465 patients with primary TNBC. To facilitate reusing this unique dataset, we provided a detailed description of the dataset with special attention to data quality in this study. The multiomics data were generally of high quality, but a few sequencing data had quality issues and should be noted in subsequent data reuse. Furthermore, we reconduct data analyses with updated pipelines and the updated version of the human reference genome from hg19 to hg38. The updated profiles were in good concordance with those previously published in terms of gene quantification, variant calling, and copy number alteration. Additionally, we developed a user-friendly web-based database for convenient access and interactive exploration of the dataset. Our work will facilitate reusing the dataset, maximize the values of data and further accelerate cancer research.
DOI: 10.6084/m9.figshare.26539345.v1
title: Spatial Analysis Reveals Targetable Macrophage-Mediated Mechanisms of Immune Evasion in Hepatocellular Carcinoma Minimal Residual Disease

description: We utilized CO-Detection by indEXing (CODEX) technology to image a total of 1,065,284 hepatocellular carcinoma (HCC) cells, analyzing them with a comprehensive 41-marker panel. In this procedure, DNA-barcoded antibodies targeted tissue antigens and were visualized through iterative hybridization with complementary fluorescent DNA oligonucleotides. Our algorithmic pipeline processed the raw imaging data to segment and identify single cells, accurately localize them within tissues, and quantify their marker expressions. Further, unsupervised clustering, enhanced by manual curation, utilized marker expression, and tissue localization to identify specific cell types. The imaging data were segmented into single cells based on nuclear staining, using DAPI as a reference. Spatial coordinates (X/Y) were assigned to each cell, allowing us to pinpoint each cell's precise location on the slide. The methodologies employed are detailed further in the accompanying manuscript.

The "Celllevel_rawdata_8_12_24.csv" table has been compiled to include annotations of cell types, expression profiles, coordinates of all segmented objects, and the cohort to which each cell belongs.
DOI: 10.6084/m9.figshare.7106033.v1
title: Trinity_Pwal_v2.fasta.gz

description: Trinity assembly of P. waltl. (Ver. 2)<br>
DOI: 10.17632/7f8pr9yh2b
title: Cardiovascular outcomes in patients with bullous pemphigoid on rituximab compared to those on systemic corticosteroids: A propensity - matched retrospective study using the TriNetX database

description: Supplemental materials as study methods and results. 
Figure S1. The study flowchart 
Table S1. Baseline characteristics of study subjects (before and after PSM matching) 
Table S2. Risk of Cardiovascular Outcomes in Patients with Bullous Pemphigoid Treated with Rituximab vs Steroids, Stratified by Duration of Follow-Up 
Table S3. Case number and Risk of Cardiovascular Outcomes in Patients With Bullous Pemphigoid Treated With Rituximab vs Steroids,(1 day to 1 year) 
Table S4. Risk of outcome (1 day to 1 year) PSM with different variables 
Table S5. Steroids used in this study: 
Detailed study design and data source are included in the supplementary file
DOI: 10.17632/btwpwh8292
title: d13CairCO2_LOESS_Interpolation

description: This is a smoothed curve of d13C in atmospheric CO2 from 16100 BCE to 2010 CE, based on data from Antarctic ice-cores (Eyer & Leuenberger, pers. comm.; Francey et al., 1999; Indermühle et al., 1999;Leuenberger et al., 1992) and flask data from two Antarctic stations (Halley Bay and Palmer Station) of the NOAA ESRL Carbon Cycle Cooperative Global Air Sampling Network.

If you use the interpolation curve, please ALWAYS refer to:
1) the NOAA ESRL Carbon Cycle Cooperative Global Air Sampling Network:
https://gml.noaa.gov/aftp/data/trace_gases/co2c13/flask/README_surface_flask_co2c13.html
2) the original publication of the interpolation curve:
Ferrio JP, Araus JL, Buxó R, Voltas J, Bort J (2005) Water management practices and climate in ancient agriculture: inference from the stable isotope composition of archaeobotanical remains. Vegetation History and Archaeobotany 14:510-517

Please cite also the original references of ice-core data:
Francey RJ, Allison CE, Etheridge DM, Trudinger CM, Enting IG, Leuenberger M, Langenfelds RL, Michel E, Steele LP (1999) A 1000-year high precision record of delta C-13 in atmospheric CO2. Tellus B 51:170-193 
Indermühle A, Stocker TF, Joos F, Fischer H, Smith HJ, Wahlen M, Deck B, Mastroianni D, Tschumi J, Blunier T, Meyer R, Stauffer B (1999) Holocene carbon-cycle dynamics based on CO2 trapped in ice at Taylor Dome, Antarctica. Nature 398:121-126
Leuenberger M, Siegenthaler U, Langway CC (1992) Carbon isotope composition of atmospheric CO2 during the last ice age from an Antartic ice core. Nature 357:488-490 

IMPORTANT NOTE: this dataset should be only used to apply the interpolation curve, 
e.g. as reference for d13C in archaeobotanical, wood charcoal or tree-rings
Original values from ice-cores and NOAA ESRL should be retrieved (and cited) from their original sources

BEAR IN MIND THAT THIS IS AN APPROXIMATION:
1) Ice core data, particularly regarding trapped CO2, has considerably dating errors
2) The data is based on Antarctic ice cores only. Considerable spatial variability in CO2 is expected 

METHODS:
Due to the much higher time resolution available for the last 2 centuries, the smoothing was performed dividing the data in two overlapping sections (-16100 to 1800) and (1760-2003).
The smoothing was done by fitting locally weighted least squares (LOESS) regression curves (Cleveland 1979) with a span of 0.1 and 0.4 for the first and second section, respectively.

References
Cleveland WS (1979) Robust locally weighted regression and smoothing scatterplots. Journal of the American Statistical Association 74:829-836

Contact: https://www.juanpedroferrio.com/
DOI: 10.17632/fbtfpkvjj6
title: Data for: Weak and Strong Hydrogen Interactions on Porous Carbons Materials in High-Temperature Systems

description: Weak and Strong Isotherm data collected for eight amorphous carbon materials
DOI: 10.6084/m9.figshare.5716354.v1
title: Single isolate data from Gradual plasticity alters population dynamics in variable environments: thermal acclimation in the green alga <i>Chlamydomonas reinhartdii</i>

description: Environmental variability is ubiquitous, but its effects on populations are not fully understood or predictable. Recent attention has focused on how rapid evolution can impact ecological dynamics via adaptive trait change. However, the impact of trait change arising from plastic responses has received less attention, and is often assumed to optimize performance and unfold on a separate, faster timescale than ecological dynamics. Challenging these assumptions, we propose that gradual plasticity is important for ecological dynamics, and present a study of the plastic responses of the freshwater green algae <i>Chlamydomonas reinhardtii</i> as it acclimates to temperature changes. First, we show that <i>C. reinhardtii</i>'s gradual acclimation responses can both enhance and suppress its performance after a perturbation, depending on its prior thermal history. Second, we demonstrate that where conventional approaches fail to predict the population dynamics of <i>C. reinhardtii</i> exposed to temperature fluctuations, a new model of gradual acclimation succeeds. Finally, using high-resolution data, we show that phytoplankton in lake ecosystems can experience thermal variation sufficient to make acclimation relevant. These results challenge prevailing assumptions about plasticity's interactions with ecological dynamics. Amidst the current emphasis on rapid evolution, it is critical that we also develop predictive methods accounting for plasticity.