cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3620246_d4
title: Additional file 3 of Automated detection of ncRNAs in the draft genome sequence of a colonial tunicate: the carpet sea squirt Didemnum vexillum

description: Parseable stockholm alignments files of ncRNA candidates on D. vexillum. (GZ 3403 kb)
DOI: 10.6084/m9.figshare.c.3620231_d11
title: Additional file 4: TableS2. of The MarR-like protein PchR (YvmB) regulates expression of genes involved in pulcherriminic acid biosynthesis and in the initiation of sporulation in Bacillus subtilis

description: Proteins differentially abundant in B. subtilis wild-type and Î yvmB strains. (XLS 47 kb)
DOI: 10.6084/m9.figshare.c.3620240_d5
title: Additional file 2: of Candidate effectors contribute to race differentiation and virulence of the lentil anthracnose pathogen Colletotrichum lentis

description: RT-qPCR primers used to quantify expression of Colletotrichum lentis candidate effectors in an infection time-course on lentil cultivar Eston. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3620258_d6
title: Additional file 3: Table S3. of Differential gene network analysis for the identification of asthma-associated therapeutic targets in allergen-specific T-helper memory responses

description: Fifty most significant differentially expressed genes in HDM-stimulated versus resting CD4 T cells from HDM-nonsensitized controls. We compared gene expression changes in HDM-stimulated and unstimulated CD4 T cells from HDM-nonsensitized controls. The 50 most significant differentially expressed genes are shown here. (XLS 33Â kb)
DOI: 10.15468/dl.5s4njp
title: Occurrence Download

description: A dataset containing 6022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "TaxonKey is Helianthus annuus L."
 ]
}

 The dataset includes 6022 records from 212 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033732-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620309_d6
title: Additional file 8: of SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis

description: List of required RubyGems library. It is bundled in the SUSHI source code as Gemfile.lock. (TXT 4Â kb)
DOI: 10.6084/m9.figshare.c.3620309_d7
title: Additional file 5: of SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis

description: List of SUSHI application. (XLS 5Â kb)
DOI: 10.6084/m9.figshare.c.3620309_d8
title: Additional file 7: of SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis

description: Comparison of workflow management systems. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.c.3620360_d3
title: Additional file 2: of Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2

description: DpRNL model. Atomic coordinates of DpRNL model. (PDB 258 kb)
DOI: 10.15468/dl.wvp74r
title: Occurrence Download

description: A dataset containing 94823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Fulica americana Gmelin, 1789"
 ]
}

 The dataset includes 94823 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033730-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620414_d6
title: Additional file 2: Table S1. of Pathological classification of human iPSC-derived neural stem/progenitor cells towards safety assessment of transplantation therapy for CNS diseases

description: Gene expression profile correlation coefficients. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3620435_d6
title: Additional file 6: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

description: Alignment. Sequence alignment of individual mitochondrial genes in .nexus file format. (TXT 205 kb)
DOI: 10.6084/m9.figshare.c.3620453_d2
title: Additional file 1: of Higher plasma levels of lysophosphatidylcholine 18:0 are related to a lower risk of common cancers in a prospective metabolomics study

description: Limits of detection, coefficients of variation, and percentages of missing values for individual metabolites. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3620414_d7
title: Additional file 5: Table S3. of Pathological classification of human iPSC-derived neural stem/progenitor cells towards safety assessment of transplantation therapy for CNS diseases

description: Summary of the in vitro de novo copy number variations (CNVs) in the NSPCs. (A) Total numbers of the de novo CNVs in NSPCs during neural differentiation and neurosphere culture by passage 7. (B) Numbers of the CNVs in NSPCs additionally identified after additional 5 passages of neurosphere culture. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3620435_d7
title: Additional file 7: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

description: Alignment for Badger, including only genes present in 1 copy and are present in all included taxa (problematic tRNA genes were excluded from the analysis). (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3620456_d3
title: Additional file 1: of Thermal reactionomes reveal divergent responses to thermal extremes in warm and cool-climate ant species

description: Table S1. Annotation, P-value, r2 , adjusted P-value, and expression type for the thermally-responsive transcripts in each species. (CSV 436Â kb)
DOI: 10.6084/m9.figshare.c.3620456_d4
title: Additional file 3: of Thermal reactionomes reveal divergent responses to thermal extremes in warm and cool-climate ant species

description: Table S2. Results of the gene set enrichment analysis, showing the enriched gene ontology terms for each species in each thermal response category. (CSV 2Â kb)
DOI: 10.6084/m9.figshare.c.3620474_d1
title: Additional file 2: of Clinical supervision for clinical psychology students in Uganda: an initial qualitative exploration

description: TableÂ S2. Themes and sub-themes.
DOI: 10.6084/m9.figshare.c.3620414_d9
title: Additional file 13: Table S7. of Pathological classification of human iPSC-derived neural stem/progenitor cells towards safety assessment of transplantation therapy for CNS diseases

description: Primer information (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3620474_d2
title: Additional file 1: of Clinical supervision for clinical psychology students in Uganda: an initial qualitative exploration

description: TableÂ S1. Data excerpt and coding.
DOI: 10.57967/hf/2797
title: s_uaang-LoRA_Dataset
DOI: 10.57967/hf/3796
title: s_uaang-LoRA_Dataset
DOI: 10.15468/dl.s76rq9
title: Occurrence Download

description: A dataset containing 2516546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2516546 records from 559 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033728-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620621_d1
title: Additional file 1: of Vine nitrogen status and volatile thiols and their precursors from plot to transcriptome level

description: Genes differentially expressed in response to N at (v + 28) and (v + 35) in 2013. p value ≤ 0.05 and │LFC│ ≥ 0.6. C, control; ns, not significant. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3620621_d2
title: Additional file 3: of Vine nitrogen status and volatile thiols and their precursors from plot to transcriptome level

description: Genes differentially expressed in response to N at (v + 28) and (v + 35) in 2013 and 2014. p value ≤ 0.05 and │LFC│ ≥ 0.6. C, control; ns, not significant. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3620627_d1
title: Additional file 1: of Dysregulation of mitotic machinery genes precedes genome instability during spontaneous pre-malignant transformation of mouse ovarian surface epithelial cells

description: Urzua_RNA_dataset. Contains the complete, loess normalized dataset of log2 ratio data values for 15,023 cDNA probes in 35 microarrays. Column A contains clone (gene) identity and gene description. (XLS 10723Â kb)
DOI: 10.6084/m9.figshare.c.3620597_d7
title: Additional file 4: Table S1. of Punctuated chromatin states regulate Plasmodium falciparum antigenic variation at the intron and 2Â kb upstream regions

description: Intron FAIRE-Seq signal comparison between var genes and different gene families (P-value is calculated based on Wilcoxon-Rank-Sum test, FDR indicates false discovery rate). (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3620660_d3
title: Additional file 3: of Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics

description: (Tables) Presences of the six marker genes used for the Vibrio multiplex PCR in each genome of NCBI microbial genome database. The lists of genomes (Column A) were obtained from NCBI genome database ( http://www.ncbi.nlm.nih.gov/genome/browse/ ). The matched genome sequence (Column C), ID and position of sequence (Column D) are BLAST results at microbial genome BLAST web site in NCBI ( http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastSearch&BLAST_SPEC=MicrobialGenomes ). (XLSX 78 kb)
DOI: 10.15468/dl.qnvbuh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes pembaensis Theobald, 1901"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033734-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620741_d1
title: Additional file 1: of Polymorphisms of two loci at the oxytocin receptor gene in populations of Africa, Asia and South Europe

description: Four studied populations. (XLSX 62Â kb)
DOI: 10.6084/m9.figshare.c.3620753_d1
title: MOESM1 of Hydrocarbon bio-jet fuel from bioconversion of poplar biomass: techno-economic assessment

description: Additional file 1. Temperature and pressure of major unit operations from Aspen modeling, and the capital scaling factor.
DOI: 10.6084/m9.figshare.c.3620789_d1
title: Additional file 1: of Is alcohol consumption a risk factor for prostate cancer? A systematic review and metaâ  analysis

description: Meta-analysis data on prostate cancer and alcohol consumption. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3620792_d1
title: Additional file 1: of Improved application technique of albumin-glutaraldehyde glue for repair of superficial lung defects

description: Results of individual tests. (XLS 63 kb)
DOI: 10.6084/m9.figshare.c.3620834_d3
title: Additional file 2: PPI data. of Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors

description: F. tularensis protein interactions with 1) human proteins, 2) murine proteins, and 3) the combined set of human proteins augmented with murine orthologs. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.c.3620852_d2
title: Additional file 2: of PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues

description: Performance of PEPstrMOD on CyclicPep, ModPep and ModPep16 datasets. Table S5. Performance comparison of PEPstrMODpc with PEP-FOLDc and ab initio model on CyclicPep dataset in vacuum environment. Table S6. Performance comparison of PEPstrMODpc and ab initio model on CyclicPep dataset in hydrophilic environment. Table S7. Performance of PEPstrMOD, PEP-FOLD and PepLook on 28 cyclic peptides. Table S8. Performance of PEPstrMOD on ModPep dataset. Table S9. Comparison of the performance of initial structures of PEPstrMOD, ab initio and DSSP models on ModPep16 dataset. Table S10. Comparison of the performance of minimized structures of PEPstrMOD, ab initio and DSSP models on ModPep16 dataset in vacuum environment. Table S11. Comparison of the performance of structures of PEPstrMOD, ab initio and DSSP models on ModPep16 dataset in vacuum environment after 100 ps MD. Table S12. Comparison of the performance of structures of PEPstrMOD, ab initio and DSSP models on ModPep16 dataset in vacuum environment after 1 ns MD. Table S13. Comparison of the performance of minimized structures of PEPstrMOD, ab initio and DSSP models on ModPep16 dataset in hydrophilic environment. Table S14. Comparison of the performance of structures of PEPstrMOD, ab initio and DSSP models on ModPep16 dataset in hydrophilic environment after 100 ps MD. Table S15. Comparison of the performance of structures of PEPstrMOD, ab initio and DSSP models on ModPep16 dataset in hydrophilic environment after 1 ns MD. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.c.3620867_d1
title: Additional file 1: of Health professionsâ   students have an alarming prevalence of depressive symptoms: exploration of the associated factors

description: The data of depressive symptoms among Health Professions' students study from King Saud University, Saudi Arabia. (XLSX 159 kb)
DOI: 10.6084/m9.figshare.c.3620879_d1
title: Additional file 4: of Uncovering the pathways underlying whole body regeneration in a chordate model, Botrylloides leachi using de novo transcriptome analysis

description: De novo assembled B. leachi transcripts with significant match to the UniProt protein database (E-value cut off atâ
DOI: 10.6084/m9.figshare.c.3620918_d1
title: Additional file 2: of Systematic analysis of somatic mutations driving cancer: uncovering functional protein regions in disease development

description: All supplementary tables merged. 1: List of all identified SiMPRes. 2: All novel genes that contain identified low significance SiMPRes. 3: Substitution percentages calculated for mutations in and outside of SiMPRes. 4: Criteria for the classification of somatic mutations. 5: The elements of the SCGD dataset with support information. (XLS 285 kb)
DOI: 10.15468/dl.9jedte
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes polynesiensis Marks, 1954"
 ]
}

 The dataset includes 65 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033736-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqmywz
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Country is Panama",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033737-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620972_d5
title: Additional file 1: of Mitochondrial and oxidative stress genes are differentially expressed in neutrophils of sJIA patients treated with tocilizumab: a pilot microarray study

description: File contains the list of 433 significant probe sets obtained by paired t-test using the statistical cut-off level of p
DOI: 10.6084/m9.figshare.c.3620972_d6
title: Additional file 5: of Mitochondrial and oxidative stress genes are differentially expressed in neutrophils of sJIA patients treated with tocilizumab: a pilot microarray study

description: File contains the enriched genes for KEGG_Oxidative Phosphorylation pathway obtained from GSEA. (XLS 13 kb)
DOI: 10.6084/m9.figshare.c.3621008_d1
title: Additional file 1: Table S1. of Association between levels of persistent organic pollutants in adipose tissue and cryptorchidism in early childhood: a caseâ  control study

description: Number and percentage of PCBs, PCDD/F, and PBDE congeners above LOQ (Limit of Quantification) in adipose tissue samples. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3621050_d2
title: Additional file 7: of Heterotrimeric Gâ  proteins in Picea abies and their regulation in response to Heterobasidion annosum s.l. infection

description: Relative expression values of PaGG1, PaGG3, PaHGB1 and PaGPA1 in cotyledons and roots of P. abies treated with abscisic acid, methyl jasmonate, wounding at 4 and 24 h post treatment compared to 0 h. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3621095_d4
title: Additional file 9: of The trade-off of availability and growth inhibition through copper for the production of copper-dependent enzymes by Pichia pastoris

description: Net fluxes of GSLAC clone. (XLS 81 kb)
DOI: 10.6084/m9.figshare.c.3621095_d5
title: Additional file 2: of The trade-off of availability and growth inhibition through copper for the production of copper-dependent enzymes by Pichia pastoris

description: Percentage copper adsorbed to the cells. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3621095_d6
title: Additional file 6: of The trade-off of availability and growth inhibition through copper for the production of copper-dependent enzymes by Pichia pastoris

description: Carbon source and Optical density of shake flask cultivation. (XLS 20 kb)
DOI: 10.6084/m9.figshare.c.3621095_d7
title: Additional file 4: of The trade-off of availability and growth inhibition through copper for the production of copper-dependent enzymes by Pichia pastoris

description: Extracellular flux parameters data for wildtype. (XLS 38 kb)
DOI: 10.6084/m9.figshare.c.3621137_d1
title: Additional file 4: Dataset 2. of A critical role for the Drosophila dopamine D1-like receptor Dop1R2 at the onset of metamorphosis

description: DAVID bioinformatic analysis of dsDop1R2 differentially expressed genes. DAVID GO clustering functional analysis reveals statistically significant (yellow) genes (with Benjamin corrected p-value of
DOI: 10.6084/m9.figshare.c.3621095_d8
title: Additional file 3: of The trade-off of availability and growth inhibition through copper for the production of copper-dependent enzymes by Pichia pastoris

description: Extracellular flux parameters data for GSLAC clone. XLS 38 kb)
DOI: 10.15468/dl.vua9ft
title: Occurrence Download

description: A dataset containing 4038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes punctor (Kirby, 1837)"
 ]
}

 The dataset includes 4038 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033738-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621167_d3
title: Additional file 5: of Gene expression profiling of trout regenerating muscle reveals common transcriptional signatures with hyperplastic growth zones of the post-embryonic myotome

description: Major functional categories of cluster IV and lists of genes that formed them. (XLSX 25 kb)
DOI: 10.15468/dl.wv6mx5
title: Occurrence Download

description: A dataset containing 3796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Country is Brazil",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 3796 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033739-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621233_d1
title: Additional file 2: of Copy number variations in the genome of the Qatari population

description: Complete dataset (with full annotation) of all CNV regions detected in 97 Qataris. (XLSX 3202 kb)
DOI: 10.6084/m9.figshare.c.3621245_d1
title: Additional file 4: Figure 1(a-f). of Transcriptomics of liver and muscle in Holstein cows genetically divergent for fertility highlight differences in nutrient partitioning and inflammation processes

description: Correlation plots of gene expression values in FPKM for each time-point versus all others per tissue. (ZIP 324 kb)
DOI: 10.6084/m9.figshare.c.3621248_d1
title: MOESM2 of Mathematical review on source-type diagrams

description: Additional file 2 . MATLAB program to project random points in the moment tensor eigenvalue space into source-type diagrams. This source code requires the function of Additional file 1.
DOI: 10.6084/m9.figshare.c.3621248_d2
title: MOESM1 of Mathematical review on source-type diagrams

description: Additional file 1 . MATLAB function for conversion between moment tensor eigenvalues and coordinates in source-type diagrams. An example to use this function is provided as Additional file 2.
DOI: 10.6084/m9.figshare.c.3621245_d2
title: Additional file 2: Table S2. of Transcriptomics of liver and muscle in Holstein cows genetically divergent for fertility highlight differences in nutrient partitioning and inflammation processes

description: Muscle Differentially Expressed Gene Data respectively; XLSX workbooks with 6 sheets: (i) “1N_vs_1P.sig”, (ii) “2N_vs_2P.sig”, (iii) “3N_vs_3P.sig” contain differentially expressed genes between FertN and FertP cows at time-points 1,2,3 respectively, (iv) “in_all_TP” are genes found DE in all time-points, (v) fpkms_X are the full FPKMs for each gene in the tissue, (vi) “DAVID_annotation_LP_EL_ML_X” are annotations from DAVID per time-point, specifying each term found significantly enriched for genes, and the DE genes with an arrow to indicate direction of dysregulation, down being lower expression in FertP. (XLSX 15 mb)
DOI: 10.6084/m9.figshare.c.3621371_d5
title: Additional file 4: of Understanding factors affecting patient and public engagement and recruitment to digital health interventions: a systematic review of qualitative studies

description: COREQ Checklist. (XLSX 61 kb)
DOI: 10.15468/dl.4cxrsx
title: Occurrence Download

description: A dataset containing 1405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes scapularis Rondani, 1848"
 ]
}

 The dataset includes 1405 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033740-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621374_d5
title: Additional file 1 of Health figures: an open source JavaScript library for health data visualization

description: Nielsenâ  s Heuristic evaluation. The data contains the results form Nielsenâ  s Heuristic Evaluation conducted by three usability experts. (CSV 116 kb)
DOI: 10.6084/m9.figshare.c.3621443_d4
title: Additional file 8: Table S5. of Computational prediction and experimental validation of novel Hedgehog-responsive enhancers linked to genes of the Hedgehog pathway

description: PCR primers for amplification of mouse genomic regions. Mouse genomic coordinates (mm9) for primer sequence used to amplify candidate regions. (XLSX 10 kb)