cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/0mw2hm
title: Funed-Pol - Coleção de lâminas de grãos de pólen

description: A coleção de lâminas de grãos de pólen do Serviço de Recursos Vegetais e Opoterápicos (SRVO) conta com 4600 lâminas de, aproximadamente, 1000 espécies de plantas, distribuídas em 650 gêneros e 164 famílias. A Palinoteca do SRVO recebe diversas visitas técnicas para consulta ao seu acervo, e contribui para a feitura de inúmeros trabalhos científicos, dentre monografias, dissertações, teses e artigos.
O estudo dos grãos de pólen, esporos e outros palinomorfos microscópicos, sejam fósseis ou atuais, é denominado palinologia. A Melissopalinologia é o estudo dos grãos de pólen presentes no mel, com o propósito de identificar as espécies de plantas visitadas pelas abelhas, para coleta de néctar e elaboração do mel. Esta ferramenta também pode ser utilizada em estudos ecológicos sobre relações de polinização, e em estudos de origem botânica de produtos apícolas. Consultar uma coleção de referência de lâminas de grãos de pólen é de suma importância para a identificação dos grãos de pólen. No Brasil e no mundo existem poucas coleções deste tipo disponíveis para consulta da comunidade científica, e, portanto a Coleção de Lâminas de Grãos de Pólen do SRVO é um importante acervo deste tipo de material, principalmente de espécies da flora do Cerrado de Minas Gerais.
DOI: 10.15468/qsyo43
title: ZUEC-ORT - Coleção de Orthoptera do Museu de Zoologia da UNICAMP

description: A coleção de Orthoptera do Museu de Zoologia “Prof. Adão José Cardoso” da Universidade Estadual de Campinas (UNICAMP) conta com material conservado em via úmida (álcool 70%). Os exemplares são provenientes do estado de São Paulo (Sudeste do Brasil). O processo de catalogação e informatização da coleção está em andamento e está sendo utilizado o gerenciador de banco de dados Microsoft Excel. A maior parte do acervo constitui a coleção científica, destinada principalmente ao atendimento de pesquisadores interessados no estudo dos Orthoptera.
DOI: 10.15468/dl.anuacd
title: Occurrence Download

description: A dataset containing 795 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus zeteki"
 ]
}

 The dataset includes 795 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000980-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxbn59
title: Occurrence Download

description: A dataset containing 702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Sphenodon punctatus",
 "Year 2021-2026"
 ]
}

 The dataset includes 702 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000979-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cm9nkb
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Ilisha melastoma"
 ]
}

 The dataset includes 100 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000984-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/fr6q2k
title: FNJV - Fonoteca Neotropical Jacques Vielliard

description: A Fonoteca Neotropical Jacques Vielliard (FNJV), associada ao Museu de Zoologia "Adão José Cardoso" da Universidade Estadual de Campinas (UNICAMP), fundada em 1978, é uma das cinco maiores Fonotecas do mundo e a maior da América Latina. Conta com arquivos sons de todos os grupos de vertebrados e alguns grupos de invertebrados (como insetos e aracnídeos).

A coleção possui mais de 44 mil gravações catalogadas, e ainda outras milhares (cerca de 20 mil) que estão em processo de digitalização e tombamento. A maior parte da coleção é proveniente do Brasil, mas também contém exemplares da América do Norte, Europa, África e Oceania. Para mais detalhes www2.ib.unicamp.br/fnjv/The Fonoteca Neotropical Jacques Vielliard (FNJV), associated with the Museum of Zoology "Adão José Cardoso" at the University of Campinas (UNICAMP), founded in 1978, is one of the five largest animal sound collections in the world and the largest in Latin America. It has sound files of all vertebrate groups and some invertebrates (such as insects and arachnids).

This collection has more than 44,000 recordings cataloged and other thousands (about 20,000) that still are in the process of digitization and cataloging. Most of the records come from Brazil but the FNJV also contains sound files from North America, Europe, Africa, and Oceania. For more details www2.ib.unicamp.br/fnjv/
DOI: 10.48320/64519938-8e22-444a-aab6-cb5e876ab85f
title: Panel Study of Russian Public Opinion and Attitudes (PROPA)
DOI: 10.5281/zenodo.18777142
title: Panel Study of Russian Public Opinion and Attitudes (PROPA) – Wave 1

description: The first wave of the Panel Study of Russian Public Opinion and Attitudes (PROPA) was conducted online (March 13 – March 21, 2024; N=4,749). The respondents were recruited through the online marketplace panels. The survey gathers insights from a wide demographic cross-section of the Russian society, providing a snapshot of the attitudes, economic perceptions, and political allegiances of Russian citizens. The panel component includes 637 respondents.

Participants are Russian citizens aged 18 and over residing in Russia at the time of collection. On average, participants completed the survey in 22 minutes.

The survey covers a broad set of themes capturing respondents' sociodemographic characteristics, economic perceptions, political attitudes, media use, and war-related views. Key background variables include gender, age, region of residence within the Russian Federation, settlement type, education, family situation (including presence and number of minor children), occupation, and self-assessed household material situation. Substantively, the questionnaire measures satisfaction with personal and national economic conditions; political interest, discussion frequency, and trust in major information channels (online news and federal television); perceived protest potential and awareness; perceived support for Vladimir Putin in respondents' social circles and in Russia overall; and institutional approval. War-related questions concern support for the war in Ukraine and expectations about the likelihood of selected developments in the near future, including nuclear war, a military rebellion, a sharp deterioration of the economic situation, a ceasefire with Ukraine, a reduction in crime in Russia, and improved relations with NATO.

Dataset is in .csv and .sav format. Codebook is in .pdf format.
description: Published on Discuss Data, https://discuss-data.net/dataset/64519938-8e22-444a-aab6-cb5e876ab85f/
description: Method(s) of data collection: Public Opinion PollMethod(s) of data analysis: Statistical Analysis
DOI: 10.15468/dl.2ph3wh
title: Occurrence Download

description: A dataset containing 380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((194.73626 -50.3329,347.00776 -58.20103,256.29282 46.16742,192.65352 64.44926,194.73626 -50.3329))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dermochelys coriacea",
 "Year 1980-2000"
 ]
}

 The dataset includes 380 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000981-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18777141
title: Panel Study of Russian Public Opinion and Attitudes (PROPA) – Wave 1

description: The first wave of the Panel Study of Russian Public Opinion and Attitudes (PROPA) was conducted online (March 13 – March 21, 2024; N=4,749). The respondents were recruited through the online marketplace panels. The survey gathers insights from a wide demographic cross-section of the Russian society, providing a snapshot of the attitudes, economic perceptions, and political allegiances of Russian citizens. The panel component includes 637 respondents.

Participants are Russian citizens aged 18 and over residing in Russia at the time of collection. On average, participants completed the survey in 22 minutes.

The survey covers a broad set of themes capturing respondents' sociodemographic characteristics, economic perceptions, political attitudes, media use, and war-related views. Key background variables include gender, age, region of residence within the Russian Federation, settlement type, education, family situation (including presence and number of minor children), occupation, and self-assessed household material situation. Substantively, the questionnaire measures satisfaction with personal and national economic conditions; political interest, discussion frequency, and trust in major information channels (online news and federal television); perceived protest potential and awareness; perceived support for Vladimir Putin in respondents' social circles and in Russia overall; and institutional approval. War-related questions concern support for the war in Ukraine and expectations about the likelihood of selected developments in the near future, including nuclear war, a military rebellion, a sharp deterioration of the economic situation, a ceasefire with Ukraine, a reduction in crime in Russia, and improved relations with NATO.

Dataset is in .csv and .sav format. Codebook is in .pdf format.
description: Published on Discuss Data, https://discuss-data.net/dataset/64519938-8e22-444a-aab6-cb5e876ab85f/
description: Method(s) of data collection: Public Opinion PollMethod(s) of data analysis: Statistical Analysis
DOI: 10.15468/dl.v97jz4
title: Occurrence Download

description: A dataset containing 7093 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Viola biflora",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 7093 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000985-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3cb5c
title: Occurrence Download

description: A dataset containing 321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alopoglossus buckleyi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 321 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000987-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6493bz
title: Occurrence Download

description: A dataset containing 1267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "TaxonKey is Agathis australis",
 "Year 2021-2026"
 ]
}

 The dataset includes 1267 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000986-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ustg5y
title: Occurrence Download

description: A dataset containing 1989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asterias amurensis",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 1989 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000988-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/qchxtg
title: PACA-AGP - Herbarium Anchieta

description: A coleção PACA (Angiospermas, Gimnospermas e Pteridófitas) conta com cerca 87.500 registros de exemplares do Rio Grande do Sul, mas também apresenta uma boa representatividade brasileira. As coletas são de Balduíno Rambo, Aloysio Sehnem e outros botânicos que incluiram seu material neste acervo. O PACA é conhecido e reconhecido internacionalmente
DOI: 10.15468/dd.f3fvzp
title: Dataset generated from Esri tool

description: Derived dataset generated by Esri geoprocessing tool using GBIF API
DOI: 10.15468/dl.gywskr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Ilisha novacula"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000991-260225131425191/datasets/export for details.
DOI: 10.15468/dd.qemzfk
title: WSP_GBIF_Collector_Test

description: Generated from API search results. Project Test - Test Circle
DOI: 10.5281/zenodo.18776380
title: Enhanced Transcriptomics Analysis by Integration with Large-Scale Knowledge Graphs and large language models — Zenodo Data Deposit

description: This archive contains tKOI (transcriptomics Knowledge-graph-driven Omics Integration) analysis results generated for the manuscript: Gu W, Bellucci G, Peetoom B, Baranzini S. "Enhanced Transcriptomics Analysis by Integration with Large-Scale Knowledge Graphs and Large Language Models."

 

tKOI integrates differential gene expression data into a heterogeneous biological knowledge graph (a pruned subset of SPOKE) through Personalized PageRank (PPR) network propagation. For each input transcriptomic dataset, tKOI generates enrichment statistics — including network-derived effect sizes (β coefficients) and permutation-based empirical FDR values — across 18 node types, including genes, proteins, pathways, diseases, cell types, anatomical structures, compounds, and other functional entities.

 

Each .rda file contains the complete tKOI result object for a single analysis and can be loaded in R using: load("filename.rda"). The result object contains personalized PageRank scores, β coefficients, empirical p-values, FDR-adjusted q-values, and node-level annotations across all 18 supported biological modalities.

 

The deposit is organized into three folders:

 



e-cigarette/ (4 files, ~1.3 GB): tKOI results from compound association analysis of JUUL e-cigarette flavor aerosol exposure (Figure 3A–C). Transcriptomic data from Moshensky et al. (eLife, 2022), a bulk RNA-seq study in mice exposed to four JUUL pod flavors for 3 months. Includes mango_result.rda, mint_result.rda, menthol_result.rda, and crc_result.rda (colorectal cancer comparison dataset).


2. pathway replication/ (3 files, ~1.0 GB): tKOI results from three bulk RNA-seq datasets benchmarking tKOI enrichment against conventional Gene Ontology enrichment analysis (Figure 2C). Includes ra_result.rda (rheumatoid arthritis, PBMCs), pca_result.rda (prostate cancer), and tobacco_result.rda (tobacco JUUL pod exposure).

 

3. lung atlas/ (40 files, ~13 GB): tKOI results for 40 individual cell clusters from the Human Lung Cell Atlas single-cell RNA-seq dataset (Figure 3D–F). Covers clusters C0–C39 representing diverse lung cell types, including AT1/AT2 alveolar cells, macrophages, T cells, endothelial cells, fibroblasts, basal cells, goblet cells, and transitional club-AT2 (bronchioalveolar stem) cells.
DOI: 10.5281/zenodo.18776379
title: Enhanced Transcriptomics Analysis by Integration with Large-Scale Knowledge Graphs and large language models — Zenodo Data Deposit

description: This archive contains tKOI (transcriptomics Knowledge-graph-driven Omics Integration) analysis results generated for the manuscript: Gu W, Bellucci G, Peetoom B, Baranzini S. "Enhanced Transcriptomics Analysis by Integration with Large-Scale Knowledge Graphs and Large Language Models."

 

tKOI integrates differential gene expression data into a heterogeneous biological knowledge graph (a pruned subset of SPOKE) through Personalized PageRank (PPR) network propagation. For each input transcriptomic dataset, tKOI generates enrichment statistics — including network-derived effect sizes (β coefficients) and permutation-based empirical FDR values — across 18 node types, including genes, proteins, pathways, diseases, cell types, anatomical structures, compounds, and other functional entities.

 

Each .rda file contains the complete tKOI result object for a single analysis and can be loaded in R using: load("filename.rda"). The result object contains personalized PageRank scores, β coefficients, empirical p-values, FDR-adjusted q-values, and node-level annotations across all 18 supported biological modalities.

 

The deposit is organized into three folders:

 



e-cigarette/ (4 files, ~1.3 GB): tKOI results from compound association analysis of JUUL e-cigarette flavor aerosol exposure (Figure 3A–C). Transcriptomic data from Moshensky et al. (eLife, 2022), a bulk RNA-seq study in mice exposed to four JUUL pod flavors for 3 months. Includes mango_result.rda, mint_result.rda, menthol_result.rda, and crc_result.rda (colorectal cancer comparison dataset).


2. pathway replication/ (3 files, ~1.0 GB): tKOI results from three bulk RNA-seq datasets benchmarking tKOI enrichment against conventional Gene Ontology enrichment analysis (Figure 2C). Includes ra_result.rda (rheumatoid arthritis, PBMCs), pca_result.rda (prostate cancer), and tobacco_result.rda (tobacco JUUL pod exposure).

 

3. lung atlas/ (40 files, ~13 GB): tKOI results for 40 individual cell clusters from the Human Lung Cell Atlas single-cell RNA-seq dataset (Figure 3D–F). Covers clusters C0–C39 representing diverse lung cell types, including AT1/AT2 alveolar cells, macrophages, T cells, endothelial cells, fibroblasts, basal cells, goblet cells, and transitional club-AT2 (bronchioalveolar stem) cells.
DOI: 10.5281/zenodo.18776964
title: Sherwin Carlquist Publications Dataset

description: [1.0.2] - 2026-02-25

Changed



Updated version metadata to 1.0.2 in CITATION.cff and dataset_metadata.json

Updated publication date to 2026-02-25 in CITATION.cff and dataset_metadata.json

Removed full change history and added reference to CHANGELOG.md in README.md DATA_DICTIONARY.md


Added



.zenodo.json file with contributors and subjects


Note

This is a metadata-only update. The dataset CSV and field definitions remain unchanged from v1.0.
DOI: 10.15468/dl.vxp6uk
title: Occurrence Download

description: A dataset listing the 551 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, International Barcode of Life project (iBOL))",
 "Geometry POLYGON((62.66205 46.22966,75.02298 46.33227,74.62146 53.82679,63.11572 53.97636,62.66205 46.22966))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset's 551 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000963-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/hyyg9s
title: HUEG - Herbário da Universidade Estadual de Goiás

description: Instituído no ano de 2000, o herbário HUEG conta com um acervo de aproximadamente 7.000 exemplares entre Plantas vasculares, Briófitas, Fungos macroscópicos e Mixomicetos, com predomínio de representantes do Bioma Cerrado, especialmente do estado de Goiás, com coleções representativas de diversas unidades de conservação do estado. Encontra-se indexado no Index Herbariorum, Rede Brasileira de Herbários (SBB) e INCT-Herbário Virtual da Flora e dos Fungos. Tem por objetivo tornar-se uma coleção de referência para o estudo da flora e da micobiota do Cerrado.
DOI: 10.15468/dl.yxha4m
title: Occurrence Download

description: A dataset containing 119083 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Piaya cayana",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2026",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 119083 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000949-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.16588.41607
title: Assessing existing urban services and facilities of Khulna City Corporation area for development initiatives.
DOI: 10.13140/rg.2.2.17532.13446
title: Problem Instances for the Directional Sensor Continuous Coverage Problem (DSCCP)
DOI: 10.13140/rg.2.2.25593.06240
title: GenBank DQ202395 [gi: 76496419] Molecular cloning of Amorphophallus campanulatus leaf lectin gene conferring insect resistance. NCBI, 2005
DOI: 10.15468/dl.445rx5
title: Occurrence Download

description: A dataset containing 2182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.35295 -24.72792,-9.64705 -24.72792,-9.64705 0.72792,-73.35295 0.72792,-73.35295 -24.72792))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Megaxenops parnaguae"
 ]
}

 The dataset includes 2182 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025234-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.34332.28803
title: Jak to jest być świadomym obywatelem?
DOI: 10.13140/rg.2.2.23007.66723
title: A proposal on original material ( illustrations included in the protologue) by McNeill et al.
DOI: 10.13140/rg.2.2.15720.06401
title: 2.10 Hoadly
DOI: 10.13140/rg.2.2.15536.56320
title: The Beauty of Visible Gold.(V.G. which is native gold) in Rock