cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/4xojow
title: RPG complété 2019 département 18

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 18. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/5wd6p6
title: R scripts for "Pauvert et al. 2019. Microbial association networks give relevant insights into plant pathobiomes. BioRxiv, https://doi.org/10.1101/2020.02.21.958033"

description: R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.
DOI: 10.15454/6d2bnu
title: Time series dataset of mussels (Dreissena sp.) veligers densities in Lake Geneva from 2006 to 2019.

description: Data description: Data were extracted from the OLA observatory (© SOERE OLA-IS, INRA of Thonon-les-Bains, SILA, [1974-2016], developed by the Eco-Informatique ORE system of the INRA) in April 2020. Data consists in Dreissena sp. veligers density (individual/m2) estimated in the pelagic area of Lake Geneva from 2006 to 2019. These data have been used in the paper by Haltiner et al. 2022. Data acquisition: Samples were collected at a pelagic station, SHL2, in Lake Geneva (France-Switzerland) according to the protocols described in Rimet et al. https://doi.org/10.4081/jlimnol.2020.1944 . Dreissena veligers were collected using a 200µm plankton net during a vertical tow from 50m to the surface. The samples were preserved in a 5% buffered formaldehyde solution. Data processing: Data were processed according to the protocols described in Rimet et al. https://doi.org/10.4081/jlimnol.2020.1944. Veligers were identified and individuals were enumerated in sub-samples that contains at least 0.1ml zooplankton. Veligers abundances were given as the number of individuals per square meter and were their densities were calculated by using the formula: Veliger abundance = N_SubSample×V_Sample/V_SubSample ×H_filtred/V_filtred Where N_SubSampleis the number of veligers in the sub-sample, V_(Sample )is the volume of the sample, V_SubSample is the volume of the sub-sample, H_filtredis the height of the sampled water column (50m) and V_filtred is the volume of water filtered by the net (4.81m3).
DOI: 10.15454/9c3ghf
title: Early castration of horses

description: • Background: The very early castration of foals has not yet been studied despite the many positive effects observed in domestic carnivores. • Objectives: To compare the performance of castration at 3 days in foals and 18 months in yearlings and assess their subsequent physical development and temperament.
DOI: 10.15454/5mi04s
title: Nutrition and Grain-Legumes WoS DataSet 1980-2018

description: The text file corresponds to the search query capturing the main human nutrition research theme on grain-legumes (both soya and pulses, see Species Grain-Legumes WoS dataset) to be applied on the WoS (Web of Knowledge). This search query is restricted to the main types of scientific literature documents, namely the types: article, book, book chapter, and review. This translated into the query DT = ("Article" OR "Book" OR "Book Chapter" OR "Review"); the time range selected is 1980-2018 (PY = "1980-2018"). Nutrition theme refers to various nutrition subjects for humans including health. UT file corresponds to the results of this search query (UT refers to a WoS unique identifier for each record retrieved) after a post-processing step which eliminated the records captured by the Wos KeyWord Plus : ie, the UT file correspond to records containing terms of the search query only in title, abstract, and (regular) keywords. See the related publication for more information.
DOI: 10.15454/5u5wqs
title: Gene ontology of hepatic differentially abundant proteins in Holstein cows supplemented with essential fatty acids and conjugated linoleic acids, https://doi.org/10.1016/j.jprot.2021.104436

description: The liver's proteomics data obtained from Holstein cows treated with abomasal infusions of coconut oil (CTRL) or a mixture of essential fatty acids and conjugated linoleic acids at days -21, +1, +28, and +63 relative to calving. The file contains protein descriptions, raw intensities, associated gene names, peptide count, differentially abundant proteins, and Gene Ontology (GO) and functional enrichment analysis.
DOI: 10.15454/6bxdjp
title: RPG complété 2019 département 69

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 69. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/6srkzj
title: RPG complété 2018 département 72

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 72. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/80biqk
title: Simulated Dataset for assessment shotgun metagenomics short read methodology

description: DWGSIM (v 0.1.13) has been used to simulate shotgun metagenomics short reads from Illumina sequencing platforms. 52,8 millions of paired-ends reads were extracted from 32 genomes retrieved from NCBI database to simulate gut microbial communities. Per-base error rate per reads is set at 0.0001 on first and second read. Mutation rate is also set at 0.001 and fraction of these mutations that were indels is 0.1. Probability that an indel is extend is zero. Genome coverage ranges from 1X to 200X. Two mocks of 52,8 millions of paired-ends reads are available and the only difference between the two mocks are the genome covers. Description of these genomes (taxonomies, genomes length, number of reads and cover) are fully described in metadata files.
DOI: 10.15454/5qiafb
title: Data article Hurtaud et al, JDS Communications 2020,1:50–54

description: Data used for the article "Evolution of milk composition, milk fat globule size, and free fatty acids during milking of dairy cows", JDS Communications 2020, 1: 50-54
DOI: 10.15454/5ujnhs
title: Enriched gene ontology terms in upregulated genes at the transition from J3-J4 larvae to adult females

description: Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the J3-J4 mixed stages and the adult female stage. GO over and under representation of terms are according to the hypergeometric test as implemented in the GofuncR Bioconductor package (https://www.bioconductor.org/packages/release/bioc/html/GOfuncR.html). Results are separated by: - Molecular Function - Biological Process - Cellular Component And, in each ontology, under, over and all differentially expressed GO terms are given. All the files are in table separated values format, with the last common providing the accession numbers of proteins annotated with the GO term under consideration.
DOI: 10.15454/6fxtwj
title: RPG complété 2018 département 31

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 31. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/6gqlqh
title: Milling itineraries for a collection of biomasses including kinetics - Product characterisation D50, span and elongation (kinetics)
DOI: 10.15454/7yd5vl
title: IPMWorks H2020 No. 101000339 – IPM Resource Toolbox Survey Questionnaire

description: IPMWorks H2020 No. 101000339 – IPM Resource Toolbox Survey Questionnaire contains the questionnaire used to get information about requirements for an IPM Resource Toolbox. Questions cover the country of residence of respondants, main crop of focus, role in agriculture, whether or not they are directly responsible for IPM decision making on farm (if so, whether they currently implement IPM, where they get information about resources from, if they trust online resources, and whether they are working towards holistic IPM strategy), what they think an online IPM resource toolbox should be, the resources it should contain, and the preferred format of the toolbox and resources within it.
DOI: 10.15454/5jhumf
title: Data for: First evidence of realized selection response on fillet yield in rainbow trout Oncorhynchus mykiss using sib selection or based on correlated ultrasound measurements

description: This dataset comprises phenotypic and pedigree information from the parental and offspring generation in a one generation selection response experiment for fillet yield in rainbow trout
DOI: 10.15454/5ztats
title: Multiple Correspondance Analysis of annotated data about Multi Criteria Assessment Methods used in the agri-food research

description: The annotation of scientific papers has been done in three steps described in detail in a related data paper (Gésan-Guiziou et al. 2019a). Firstly, the set of papers published by INRAE researchers from 2007 to 2017 have been extracted from the Web of Science (WOS) using a set of key-words. These search queries were performed mid-2017. The resulting corpus of papers (4920 papers) has been manually typed MCA (954 papers) or non-MCA (3966 papers) by domain experts using a set of positive and negative criteria defining the notion of MCA articles. Scientific articles dealing with MCA in the AgriFood sector have been associated with annotations. Finally, a group of INRAE experts in the field of MCA and/or application domains classified those articles according to eight criteria: Type of study, Purposes, Audience, Assessed dimensions, Assessed system/object, Spatial scale, Time scale, Actors’ contribution. Annotation files are available on a public repository using DOIs listed in related data paper (Gésan-Guiziou et al. 2019a). Each of the eight criteria having between 5 and 10 modalities, a total of 58 binary values, representing the present or absent modalities, characterized each article. In other terms, the data set consisted of a cloud of 954 points in a 58 dimensional space. We performed a Multiple Correspondance Analysis on this dataset, in order to analyse the structure of this cloud, and to extract clusters of homogeneous subsets of publications. We used the R package FactomineR, to perform this study.
DOI: 10.15454/8jfftb
title: Frimouss Grapevine

description: Fruit features : Fruit growth has been measured from anthesis to harvest on plants with regular crop load. The anthesis date have been observed in order to describe the data collected according to days and degree-days from anthesis. Fruit growth has been monitored using non-destructive measurements that measure fruit dimensions (diameters, length) and using destructive sampling to estimate the fruit fresh and dry mass accumulation. Metabolites : Biomass compounds and accumulated metabolites that constitute the major carbon sinks have been quantified and their contents expressed on fresh- and dry weight bases. Total proteins, nucleic acids and starch have been quantified via spectrophotometric or fluorimetric measurements after specific extraction, preparation and calibration. Culture location : INRA UMR EGFV (Ecophysiologie et Genomique Fonctionnelle de la Vigne, Bordeaux-Aquitaine)
DOI: 10.15454/8xff8d
title: CIRCASA DELIVERABLE D2.1 “Stakeholder views on the role of SOC for climate change mitigation, adaptation and SDGs”

description: Report on the views of stakeholders for potential for SOC management to contribute to SOC sequestration for climate change mitigation and adaptation and for the achievement of SDGs, including how these measures can be implemented, which barriers may constrain this, and which knowledge gaps need to be filled.
DOI: 10.15454/9hudgg
title: Experimental data of Series #5, #6 and #7: Barrier deformation measurement

description: These data describe the elongations measured along the top, middle and bottom cables of a flexible barrier when subjected to the loading of water flows laden with large wood mixtures. For every measurement, water discharge (Q, l/s), flow depth (h, mm), Top-, middle- and bottom-cable elongation were measured (mm, labelled _LW in the dataset). The equivalent elongation with a hydrostatic load was interpolated on a series of measurements loading the flexible barrier with a full hydrostatic load by the mean of a pleated plastic sheet (mm, labelled _Hydrostatic in the dataset). Each run is labeled by its mixture code, supply mode and repetition index (a, b and c), e.g., "3B(1:7)b" refers to the run with mixture 3B, supply mode 1:7, second repetition. Three Series of experiments are presented: -Series 5 used a low barrier with a height z2=50 mm, releases of large wood were weighted and the equivalent solid volume (Vlw.out, m3) was computed assuming a mean log density of 770 kg/m3. The slope was 2%. -Series 6 used a higher barrier with a height z2=100 mm, no releases were observed. The slope was 2%. -Series 7 used the same higher barrier and shows runs with slope of 4% and 6%.
DOI: 10.15454/5ot7io
title: RPG complété 2018 département 53

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 53. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020
DOI: 10.15454/5tvqol
title: RPG complété 2018 département 50

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 50. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/64xboz
title: Simulated genetic data in a hierarchical metapopulation structure

description: The data are linked to a research article entitled: “Interactions between microenvironment, selection and genetic architecture drive multiscale adaptation in a simulation experiment” in Journal of Evolutionary Biology (see References). In this research on multiscale adaptation, we simulated a hierarchical metapopulation structure with four populations, two environments per population and three patches per environment, in a two-step procedure: an initialization step without selection, with eight combinations of mutation type, selfing rate and QTL number parameters (2 modes each); out of 200,000 simulated generations in each case, we chose one with appropriate characteristics as a starting point for the next step; a selection step with all possible combinations of the following parameters: environmental pattern (4 modes), environmental range (5 modes), selection intensity (4 modes), fecundity (3 modes). This resulted in 240 scenarios for each initialized metapopulation, i.e. 1,920 scenarios in total. Each scenario was replicated 10 times, i.e. 19,200 simulation runs. The archive includes all data needed to reproduce the simulations and analyses, or to re-use the simulated metapopulations for other analyses. It has the following structure: NemoScripts directory contains the Nemo input files used to perform simulations for the initialization step and the selection step; RScripts directory contains the R scripts to read the Nemo output files, compute synthetic variables(*), and produce the figures as they appear in the publication and supplementary material (*: long computations, therefore we also directly provide those synthetic variables in the Data directory); Data directory contains the Nemo output files, the synthetic variables, and other data needed to reproduce the figures; this directory can be used as a working directory for the R scripts (recommended).
DOI: 10.15454/6eygix
title: Enriched gene ontology terms in upregulated genes at the transition from adult females to eggs

description: Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the pre-parasitic J2 stage. GO over and under representation of terms are according to the hypergeometric test as implemented in the GofuncR Bioconductor package (https://www.bioconductor.org/packages/release/bioc/html/GOfuncR.html). Results are separated by: - Molecular Function - Biological Process - Cellular Component And, in each ontology, under, over and all differentially expressed GO terms are given. All the files are in table separated values format, with the last common providing the accession numbers of proteins annotated with the GO term under consideration.
DOI: 10.15454/6votk4
title: Projet Artisols - Taches artificialisées

description: Le projet ArtiSols, soutenu par la Région Occitanie et le Fonds Européen de Développement Régional (FEDER), s’inscrit dans une démarche d’évaluation et de qualification du processus d’artificialisation des sols en région Occitanie. Piloté par INRAE (UMR TETIS), ce projet rassemble des établissements de recherche (INRAE, CNRS, INPT), des services de l’État (DRAAF Occitanie) et de la Région Occitanie (Direction de l’Aménagement, du Foncier et de l’Urbanisme), et les aménageurs BRL et CACG. Les taches artificialisées calculées sur la base d'une extraction du bâti à partir d'imagerie très haute résolution spatiale (1.5m) SPOT 6/7, pour les années 2015 à 2019. Deux distances de connexion sont proposées, à 50m et 100m. Fichiers fournis en mode vectoriel.
DOI: 10.15454/6vq9ja
title: Exploring the potential of gas-phase esterification to hydrophobize the surface of micrometric cellulose particles _ Raw data

description: Raw data for the article "Exploring the potential of gas-phase esterification to hydrophobize the surface of micrometric cellulose particles"
DOI: 10.15454/6xcmae
title: Shallots virome

description: In order to elucidate the etiology of a novel disease on shallots in France, double-stranded RNAs from four symptomatic plants and two asymptomatic plants were analyzed using HTS. The disease has been characterized by foliar symptoms consisted of yellow stripes associated with a moderate loss of vigor.
DOI: 10.15454/7lyghg
title: RPG complété 2019 département 80

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 80. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/7nor3f
title: Microfiltration itineraries annotated from the scientific litterature including a hot treatment, a microfiltration and a diafiltration unit operations

description: Microfiltration itineraries annotated from the scientific litterature including a hot treatment, a microfiltration and a diafiltration unit operations
DOI: 10.15454/8mquub
title: Uptake of fatty acids by enterocytes

description: This dataset gathers raw data on fatty acid uptake in intestinal conditions digitized from published dose-response curves. Explanations on conversion factors used to standardized uptake units are provided as well as the code used in the case interpolation was required. This dataset also provides the code used to study fatty acid uptake by enterocytes or Caco-2 cells.
DOI: 10.15454/8uia76
title: Harmonized_Tree_Microhabitat_Dataset_Version_2020.03.30

description: The datset describes observation of presence/absence of 11 groups of tree microhabitats on trees scatterred over Europe and Iran. Tree covariables are :species, DBH, management (last logging more/less 100 years) and site name.
DOI: 10.15454/5mr0ei
title: Bread wheat phenotyping data UMR 1095 GDEC

description: This dataset supports the study of Beral et al. (2020) including phenotyping data for two experiments conducted at INRA, Clermont-Ferrand in 2015/2016 and 2016/2017 using the Pheno3C high-throughput, field-phenotyping platform. Two genetic panels of winter wheat genotypes were indeed usedin 2015/2016 and 2016/2017 under two distinct environmental conditions. In the analysis, we have annotated E1 and E2 as respectively the first population (Panel 2016) under two contrasting water conditions; and E3 and E4 as respectively the second population (Panel 2017) under two contrasting conditions. This dataset includes one file of phenotyping data for each genetic panel. These phenotyping data are adjusted means of the following variables: SPM2: number of spikes per m², GPS: number of grains per spike, GPM2: number of grains/m², TKW: thousand kernel weight (g at 15% moisture content), GY: Grain yield (t/ha at 15% moisture content), GSM: grain size mean (mm²), GSV: grain size variance (mm^4), P5: 5th percentile of grain size distribution and P95: 95th percentile of grain size distribution. E1 (well-watered, 2016); E2 (water-deficit, 2016); E3 (well-watered, 2017); E4 (water-deficit, 2017).
DOI: 10.15454/5vjyco
title: Physical-chemical and structural stability of poly(3HB-co-3HV)/(ligno-)cellulosic fibre-based biocomposites over successive dishwashing cycles

description: Raw data for the article "Physical-Chemical and Structural Stability of Poly(3HB-co-3HV)/(ligno-)cellulosic Fibre-Based Biocomposites over Successive Dishwashing Cycles » published in Membranes. The dataset contains 7 excel files : colorimetry, thickness_weight uptake, tensile properties, overall migration, laser granulometry_lignocellulosic fillers, DSC_cycle 5, and DSC_thermograms_supplementary data.
DOI: 10.15454/6nfgz9
title: RUNAWAY model package on CAPSIS-4 platform.

description: The RUNAWAY model is a simulation demogenetic agent-based model (DG-ABM) focused on the evolution of traits, behaviours and genome architecture under sexual selection. It is aimed at demonstrating the importance of context-dependence in the retroaction between evolution of traits and evolution of the genetic architecture. It runs on the CAPSIS-4 simulation platform developed by INRAE.
DOI: 10.15454/6uedbv
title: CIRCASA REPORT: Analysis of current capacity building and training needs surrounding SOC research and implementation

description: Teaching and training on soil organic carbon (SOC) is key if we are to take advantage of the many benefits of maintaining and enhancing SOC. Not least, a good background and understanding of SOC is needed by the academic, agricultural and land management communities if land management is to be used effectively for climate change mitigation. This report is a scoping study, providing a first look at the resources and provision for the teaching and training of SOC mainly in academia but also in selected international programs and initiatives. It is not a definitive study but instead provides an insight into SOC teaching and training, identifying commonalities and trends which may be worthy of future investigation. The report draws on three sources of information; two previous CIRCASA reports, an analysis of international programs and initiatives and a survey of academic stakeholders.
DOI: 10.15454/6z1mxk
title: Source code for SurEau.c

description: The source code in C language of the model SurEau.c
DOI: 10.15454/73wgs3
title: RPG complété 2019 département 14

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 14. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021
DOI: 10.15454/7cic7b
title: RPG complété 2019 département 66

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 66. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/7ika8t
title: RPG complété 2019 département 54

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 54. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.