cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26644516
title: Additional file 1 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 1: Supplemental Table 1: Number of reads before and after filtering per sample. Input = original number of sequences, prior to filtering, Filtered = number reads following initial quality filtering, DenoiseF = number of reads remaining after denoising forward, DenoiseR = number of reads remaining after denoising reverse, Merged = number of reads remaining after merging forward and reverse reads, Nonchim = number of merged reads remaining after chimera removal
DOI: 10.6084/m9.figshare.26644516.v1
title: Additional file 1 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 1: Supplemental Table 1: Number of reads before and after filtering per sample. Input = original number of sequences, prior to filtering, Filtered = number reads following initial quality filtering, DenoiseF = number of reads remaining after denoising forward, DenoiseR = number of reads remaining after denoising reverse, Merged = number of reads remaining after merging forward and reverse reads, Nonchim = number of merged reads remaining after chimera removal
DOI: 10.6084/m9.figshare.26644519
title: Additional file 2 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 2: Supplemental Table 2: Relative abundance data by state. N = number of eyes
DOI: 10.6084/m9.figshare.26644519.v1
title: Additional file 2 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 2: Supplemental Table 2: Relative abundance data by state. N = number of eyes
DOI: 10.6084/m9.figshare.26644522
title: Additional file 3 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 3: Supplemental Table 3: Relative abundance data by farm. N = number of eyes
DOI: 10.6084/m9.figshare.26644522.v1
title: Additional file 3 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 3: Supplemental Table 3: Relative abundance data by farm. N = number of eyes
DOI: 10.6084/m9.figshare.26644528
title: Additional file 4 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 4: Supplemental Table 4: Relative abundance data by individual breed. N = number of eyes
DOI: 10.6084/m9.figshare.26644528.v1
title: Additional file 4 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 4: Supplemental Table 4: Relative abundance data by individual breed. N = number of eyes
DOI: 10.6084/m9.figshare.26644534.v1
title: Additional file 5 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 5: Supplemental Table 5: Relative abundance data by breed purpose. N = number of eyes
DOI: 10.6084/m9.figshare.26644534
title: Additional file 5 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 5: Supplemental Table 5: Relative abundance data by breed purpose. N = number of eyes
DOI: 10.6084/m9.figshare.26644537
title: Additional file 6 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 6: Supplemental Table 6: Beta diversity subgroup analysis
DOI: 10.6084/m9.figshare.26644537.v1
title: Additional file 6 of Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis

description: Supplementary Material 6: Supplemental Table 6: Beta diversity subgroup analysis
DOI: 10.15468/dl.5r8svd
title: Occurrence Download

description: A dataset containing 2150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Country mismatch, The taxon ID was not used in backbone matching, The scientific name differs on the record from that found in the checklist, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Individual count invalid, Individual count conflicts with occurrence status)",
 "OccurrenceStatus is Present",
 "TaxonKey is Apolemichthys Burton, 1934"
 ]
}

 The dataset includes 2150 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065737-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26588556.v1
title: Additional file 8 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.26588553.v1
title: Additional file 7 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.26588559.v1
title: Additional file 9 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.26588562
title: Additional file 10 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.26588553
title: Additional file 7 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.26588556
title: Additional file 8 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.26588559
title: Additional file 9 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.26588562.v1
title: Additional file 10 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.26588565
title: Additional file 11 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 11
DOI: 10.5517/ccdc.csd.cc2jkccv
title: CCDC 2340387: Experimental Crystal Structure Determination

description: Related Article: Yimin Cai|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.26588565.v1
title: Additional file 11 of HIV rapid test performance among health facilities enrolled in HIV rapid test quality improvement initiative (RTQII) in Ethiopia

description: Supplementary Material 11
DOI: 10.6084/m9.figshare.26564232
title: Additional file 6 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 6: Table S6. FT-GPI parameter set efficacy. The Positive and Negative prediction of each combination of FT-GPI parameters was evaluated based on the detection of the 30 reference GPI-APs of P. falciparum and P. vivax in combination with cytosolic, membrane or among the full proteome. Cytosolic proteins had no TM and signal peptide according to PlasmoDB data (Suppl. Table 4). Membrane proteins presented more than 3 TM according to the same source of information. The formula used to compute the parameters of the test are given with the title of each subsection of the Table. AUC was computed using the binary output of FT-GPI (1 for positive detection and 0 if not).
DOI: 10.6084/m9.figshare.26564241.v1
title: Additional file 9 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 9: Table S9. Composition of the GPI-proteome of 46 Haemosporida isolates according to FT-GPI PLA030 parameter set. Proteomes were analysed using FT-GPI software. OrthoMCL annotation (cog_id) and synteny available at PlasmoDB were used to assess the presence of genes in the different isolates. Analysis was based on protein presenting more than 210 amino acids. Colour coding was used to determine OrthoMCL group encoding orthologs. The table refers to the number of paralogs found in each genome. Lines merging information from the different orthoMCL groups are marked as summary in column G. The left part of the table displays the number of orthologs present in PlasmoDB, FT-GPI detection with the 31 combinations of FT-GPI parameters and specific detection of PLA001 and PLA030. GPI-AP provided gene names of the 33 GPI-AP candidates validated in the present study. Four were new GPI-AP compared with P. falciparum 3D7 and P. vivax Sal-1 GPI-proteome (Fig. 4). SRA detection as GPI-AP was species specific. The sum of validated GPI-AP is given at the top of the table as well as the sum not-validated putative GPI-AP (from line 121 to 177). Some orthologs with size below 210 aa were introduced in the analysis and are in italics. P. falciparum 3D7 and P. vivax Sal-1 columns are in bold. The right part of the table provides information about mean, median and standard deviation of the size of protein sequences in recorded per line. * indicates the duplicated OrthoMCL IDs encompassing genes from different loci.
DOI: 10.6084/m9.figshare.26564217
title: Additional file 1 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 1: Table S1. Downloaded proteomes from PlasmoDB database. Amino acid sequences were automatically submitted to FT-GPI analysis.
DOI: 10.6084/m9.figshare.26564220.v1
title: Additional file 2 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 2: Table S2. FT-GPI parameter sets. A. FT-GPI combination of FT-GPI parameters values used form the analysis of Plasmodium proteomes. Seven parameters were set according to FT-GPI and TMPred options available in the FT-GPI software. B. FT-GPI software options. Parameters are available as options of the software. Colours establish the correspondance between A and B tables. Green corresponds to the options fixing the N-terminal TM parameters. Blue indicates C-terminal TM detection parameters corresponding options. Pink indicates the central TM score and brown shows TMpred TM specific parameters.
DOI: 10.6084/m9.figshare.26564223.v1
title: Additional file 3 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 3: Table S3. Taxonomic description of 46 isolates from the Haemosporida order. The proteomes of 46 isolates distributed over the four major subgenera of Plasmodium species and one Hepatocystis parasite were downloaded from PlasmoDB database. Colours indicate the main taxonomic groups found in the literature. Laverania-Pg differentiated P. gaboni and close species from the P. falciparum/P. reichenowi group of parasites [68]. Human-infecting parasites are in bold. PlasmoDB and other source of information were used to establish the host and geographic origin of the different isolates. P. faciparum 3D7 is a reference laboratory strain and first described GPI-proteome in apicomplexa [17]. Cloned: genome sequence was obtained from long-term, established laboratory strains that often pass through a purification step. All P. falciparum isolates are of clinical origin. Clinical: non-P. falciparum isolates that were recovered from malaria patients
DOI: 10.6084/m9.figshare.26564238.v1
title: Additional file 8 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 8: Table S8. Composition of the GPI-proteome of 46 Haemosporida isolates according to FT-GPI PLA001 parameter set. Proteomes were analysed using FT-GPI software. The OrthoMCL annotation (cog_id) and synteny available at PlasmoDB were used to assess the presence of genes in the different isolates. Our analysis was based on proteins presenting more that 210 amino acids. Colour coding was used to determine OrthoMCL group encoding orthologs. The table refers to the number of paralogs found in each genome. Lines merging information from the different orthoMCL groups are marked as Summary in column G. The left part of the table displays the number of orthologs present in PlasmoDB, the FT-GPI detection with the 31 combinations of FT-GPI parameters and the specific detection of PLA001 and PLA030. The GPI-AP provided gene names of the 33 GPI-AP candidates validated in the present study. Four were new GPI-AP compared with P. falciparum 3D7 and P. vivax Sal-1 GPI-proteome (Fig. 4). SRA detection as GPI-AP was species specific. The sum of validated GPI-AP is given at the top of the table as well as the not-validated putative GPI-AP (from line 121 to 174). Some orthologs with size below 210 aa were introduced in the analysis and are in italics. P. falciparum 3D7 and P. vivax Sal-1 columns are in bold. The right part of the table provides information about mean, median and standard deviation of the size of protein sequences in recorded per line. * indicates the duplicated OrthoMCL IDs encompassing genes from different loci.
DOI: 10.6084/m9.figshare.26564241
title: Additional file 9 of FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

description: Additional file 9: Table S9. Composition of the GPI-proteome of 46 Haemosporida isolates according to FT-GPI PLA030 parameter set. Proteomes were analysed using FT-GPI software. OrthoMCL annotation (cog_id) and synteny available at PlasmoDB were used to assess the presence of genes in the different isolates. Analysis was based on protein presenting more than 210 amino acids. Colour coding was used to determine OrthoMCL group encoding orthologs. The table refers to the number of paralogs found in each genome. Lines merging information from the different orthoMCL groups are marked as summary in column G. The left part of the table displays the number of orthologs present in PlasmoDB, FT-GPI detection with the 31 combinations of FT-GPI parameters and specific detection of PLA001 and PLA030. GPI-AP provided gene names of the 33 GPI-AP candidates validated in the present study. Four were new GPI-AP compared with P. falciparum 3D7 and P. vivax Sal-1 GPI-proteome (Fig. 4). SRA detection as GPI-AP was species specific. The sum of validated GPI-AP is given at the top of the table as well as the sum not-validated putative GPI-AP (from line 121 to 177). Some orthologs with size below 210 aa were introduced in the analysis and are in italics. P. falciparum 3D7 and P. vivax Sal-1 columns are in bold. The right part of the table provides information about mean, median and standard deviation of the size of protein sequences in recorded per line. * indicates the duplicated OrthoMCL IDs encompassing genes from different loci.
DOI: 10.25582/data.2024-04.3085976/2552681
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085977/2552682
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085978/2552683
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085979/2552684
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085980/2552685
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085981/2552686
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3085983/2552687
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.ewgav9
title: Occurrence Download

description: A dataset containing 1257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Peropteryx kappleri Peters, 1867"
 ]
}

 The dataset includes 1257 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004607-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zva3y
title: Occurrence Download

description: A dataset containing 3164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "OccurrenceStatus is Present",
 "StateProvince is Bihar",
 "TaxonKey is Dicruridae"
 ]
}

 The dataset includes 3164 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019226-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2dgs8
title: Occurrence Download

description: A dataset containing 533675 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lepidoptera Eastern Fennoscandia (Luomus) (LEPFEN)"
 ]
}

 The dataset includes 533675 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019219-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svuq9w
title: Occurrence Download

description: A dataset containing 523215 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi Photographique des Insectes Pollinisateurs (SPIPOLL)"
 ]
}

 The dataset includes 523215 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019220-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9e2x2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hinomoto nihonensis Hoshina, 2002",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216148-220831081235567/datasets/export for details.
DOI: 10.15468/dl.gbzmun
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leontopodium wilsonii Beauverd"
 ]
}

 The dataset includes 80 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005979-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmtx82
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bhanotia pauciradiata Allen & Kuiter, 1995)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216172-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9tf2n
title: Occurrence Download

description: A dataset containing 21965665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000000.0",
 "Country is Spain"
 ]
}

 The dataset includes 21965665 records from 530 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232563-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tb78hm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Negreum amagisanum (Morita, 1994)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216199-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnhdbq
title: Occurrence Download

description: A dataset containing 1405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "Geometry POLYGON((107.67011 2.2116,109.1875 -3.32446,116.47098 -5.21585,118.6712 -1.12604,120.49207 4.48366,118.82294 7.20052,116.39511 7.87744,107.67011 2.2116))",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhabdotorrhinus corrugatus (Temminck, 1832)",
 "Year 2014-2023"
 ]
}

 The dataset includes 1405 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232564-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.58116/uek/rr3jui
title: The endowment effect in the housing market: The role of behavioural interventions

description: The database contains WTA (willingness-to-accept) and WTP (willingness-to-pay) values reported by participants of an experiment conducted on a group of 180 homeowners.The study aims to assess the impact of behavioural interventions on the intensity of the endowment effect in the housing market.
DOI: 10.15468/dl.adeyn9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eriopsela quadrana (Hübner, 1811-1813)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0221910-220831081235567/datasets/export for details.
DOI: 10.15468/dl.9tfwvn
title: Occurrence Download

description: A dataset containing 1085 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meconopsis integrifolia (Maxim.) Franch."
 ]
}

 The dataset includes 1085 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258144-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.