cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.74bf15t
title: Data from: Does “when” really feel more certain than “if”?: two failures to replicate Ballard and Lewandowsky (2015)

description: We report on two independent failures to replicate findings by Ballard and
 Lewandowsky (1), who showed that certainty in, and concern about,
 projected public health issues (e.g., impacts of climate change) depend on
 how uncertain information is presented. Specifically, compared to a
 projected range of outcomes (e.g., a global rise in temperature between
 1.6 and 2.4 degrees C) by a certain point in time (the year 2065), Ballard
 and Lewandowsky (1) showed that focusing people on a certain outcome (a
 global rise in temperature of at least 2 degrees C) by an uncertain
 time-frame (the years 2054-2083) increases certainty in the outcome, and
 concern about its implications. Based on two new studies that showed a
 null effect between the two presentation formats, however, we recommend
 treating the projection-statements featured in these studies as
 equivalent, and we encourage investigators to find alternative ways to
 improve on existing formats to communicate uncertain information about
 future events.
description: uncertainty data
 12-7-17Data for uncertainty
 experiment 1anonymized study 1
 sleeth-keppler et al rsos.csvraw num Q
 USRaw
 data for disease uncertainty experiment 2anonymized study 2
 sleeth-keppler et al rsos.CSV
DOI: 10.5061/dryad.8vr7qj8
title: Data from: New record of Pteris esquirolii in Taiwan, with two similar new species, Pteris rugosifolia and Pteris subesquirolii

description: Three taxa from Taiwan in the Pteris cretica group (Pteridaceae) have
 extremely wide pinnae, more than 2 cm wide. Leaf and spore morphology
 complemented with molecular phylogenetic results, indicate these three
 taxa are new for Taiwan. Compared with similar species in adjacent areas,
 they are described here as one new record, Pteris esquirolii, and two new
 species, P. rugosifolia and P. subesquirolii. Pteris rugosifolia has
 chartaceous and wrinkled laminae, and P. subesquirolii, similar to P.
 esquirolii, has coriaceous and flat laminae. Furthermore, there are
 differences in elevation among the three species. A table with
 morphological diagnostic features of these three species is included, as
 well as a dichotomous key for the species of the Pteris cretica group
 species occurring in Taiwan.
description: nex file for phylogeny
 reconstructionesqTree fileesqt.best.tre
DOI: 10.5061/dryad.51j892v
title: Data from: Understanding resource driven female-female competition: ovary and liver size in sand gobies

description: The operational sex ratio (OSR, ready-to-mate males to females) is a key
 factor determining mating competition. A shortage of a resource essential
 for reproduction of one sex can affect OSR and lead to competition within
 the opposite sex for resource-holding mates. In the sand goby
 (Pomatoschistus minutus), a fish with paternal care, male readiness to
 mate depends on acquiring a nest-site, whereas food abundance primarily
 impacts female egg production. Comparing body condition and gonadal
 investment of fish from two populations with different availability in
 resources (Baltic Sea: few nest-sites, more food; North Sea: many
 nest-sites, less food), we predicted females carrying more mature eggs in
 the Baltic Sea than in the North Sea. As predicted, ovaries were larger in
 Baltic Sea females, and so was liver (storage of energy reserves and
 vitellogenic compounds) for both sexes, but particularly for females. More
 females were judged (based on roundness scores) to be ready to spawn in
 the Baltic Sea. Together with a nest colonisation experiment confirming a
 previously documented difference between the two areas in nest-site
 availability, these results indicate a more female-biased OSR in the
 Baltic Sea population, compared to the North Sea, and generates a
 prediction that female-female competition for mating opportunities is
 stronger in the Baltic population. To our knowledge, this is the first
 time that female reproductive investment is discussed in relation to OSR
 using field data.
description: Morphological traits
 sand gobyFile containing all raw
 data and transformed morphological data from sand goby
 dissectionsGarcía-Berro_etal_2019_morphological_dataset.xlsxNest colonisation data sand gobyFile containing field experimental data of artificial substrate colonisation rates of male sand gobiesGarcía-Berro_etal_2019_nestcolonisation_dataset.xlsx
DOI: 10.5061/dryad.t063q70
title: Data from: Genetic determinants of disease severity in the myotonic dystrophy type 1 OPTIMISTIC cohort

description: Background: Myotonic dystrophy type 1 (DM1) is caused by expansion of an
 unstable CTG repeat in the DMPK gene. The average number of repeats
 reported in routine diagnostics is broadly correlated with disease
 severity, but with limited predictive value and is not provided to
 patients in genetic counselling. OPTIMISTIC is a large international
 randomised trial of the efficacy of personalised cognitive behavioural
 therapy and graded exercise in DM1. Objective: Evaluate the genetic basis
 of symptomatic diversity in 250 adult, ambulant DM1 patients recruited
 through OPTIMISTIC. Methods: We used small pool PCR to correct age at
 sampling biases and estimate the progenitor allele CTG repeat length and
 somatic mutational dynamics, and AciI digests and repeat primed-PCR to
 test for the presence of variant repeats. Results: We confirmed disease
 severity is driven by progenitor allele length, is further modified by sex
 and that patients with faster expansion rate develop symptoms earlier than
 predicted. We quantified the critical role of variant repeats in delaying
 age at onset by approximately 13.2 years (95% CI = 5.7 to 20.7, two-tailed
 t-test, t = 3.7, p = 0.0019). Conclusions: Careful characterisation of the
 DMPK CTG repeat to define progenitor allele length and presence of variant
 repeats has increased utility in understanding clinical variability in a
 trial cohort and provides a genetic route for defining the basis of
 treatment response and stratification in DM1 trials. We suggest to
 re-evaluate the recommended diagnostic criteria for DM1 and the potential
 value of reporting more informative prognostic information to families.
description: OPTIMISTIC Genetics
 dataThe data presented
 relate to the size, somatic mutational dynamics and presence or absence of
 variant repeats in the expanded CTG repeat allele of the DMPK gene of
 participants in the OPTIMISTIC clinical trial cohort [van Engelen B. and
 Consortium O. (2015) Cognitive behaviour therapy plus aerobic exercise
 training to increase activity in patients with myotonic dystrophy type 1
 (DM1) compared to usual care (OPTIMISTIC): study protocol for randomised
 controlled trial. Trials. 16, 224.]OPTIMISTICGenetics.csv
DOI: 10.5061/dryad.j3c6r69
title: Data from: Exposure to environmental radionuclides is associated with altered metabolic and immunity pathways in a wild rodent

description: Wildlife inhabiting environments contaminated by radionuclides face
 putative detrimental effects of exposure to ionizing radiation, with
 biomarkers such as an increase in DNA damage and/or oxidative stress
 commonly associated with radiation exposure. To examine the effects of
 exposure to radiation on gene expression in wildlife, we conducted a de
 novo RNA sequencing study of liver and spleen tissues from a rodent, the
 bank vole Myodes glareolus. Bank voles were collected from the Chernobyl
 Exclusion Zone (CEZ), where animals were exposed to elevated levels of
 radionuclides, and from uncontaminated areas near Kyiv, Ukraine. Counter
 to expectations, we did not observe a strong DNA damage response in
 animals exposed to radionuclides, although some signs of oxidative stress
 were identified. Rather, exposure to environmental radionuclides was
 associated with upregulation of genes involved in lipid metabolism and
 fatty acid oxidation in the livers – an apparent shift in energy
 metabolism. Moreover, using stable isotope analysis, we identified that
 fur from bank voles inhabiting the CEZ had enriched isotope values of
 nitrogen: such an increase is consistent with increased fatty acid
 metabolism, but also could arise from a difference in diet or habitat
 between the CEZ and elsewhere. In livers and spleens, voles inhabiting the
 CEZ were characterized by immunosuppression, such as impaired antigen
 processing, and activation of leukocytes involved in inflammatory
 responses. In conclusion, exposure to low dose environmental radiation
 impacts pathways associated with immunity and lipid metabolism,
 potentially as a stress-induced coping mechanism.
description: Data_file_2_BlastxData_file_1_TrinotateData_file_3_GOannotData_file_4AB_DEseqData_file_5ABCREAD_ME_edit
DOI: 10.82294/dvntxr1qh
title: Entrevistas semiestructuradas. Territorio: Barrancabermeja. Sector: Cultura. Año: 2024

description: A partir de un proceso de acompañamiento situado, se recopilaron testimonios por medio de entrevistas semiestructuradas durante el año 2024, las cuales indagaron sobre 4 categorías que describían la práctica en educación artística de docentes, cultores, sabedores de la enseñanza del arte, que hacían parte de los programas de formación en educación artística y cultural del sector Cultura (educación informal) en la ciudad de Barrancabermeja.
DOI: 10.5061/dryad.5rk56gg
title: Data from: Undergraduate ultrasound education at German-speaking medical faculties: a survey

description: Background: The purpose of this study was twofold: to assess the status of
 undergraduate medical ultrasound (US) education in the German-speaking
 area and to suggest a possible framework for a longitudinal undergraduate
 medical US curriculum based on the study results and a literature review.
 Methods: The survey included 44 medical faculties in the German-speaking
 area: 37 in Germany, four in Austria and three in German-speaking
 Switzerland. A standardized questionnaire focused on the following aspects
 of undergraduate medical US education: general information, organization,
 resources, assessment methods and evaluation. Results: Data from 28
 medical faculties were analysed. 26 out of 28 medical faculties offered US
 courses, 21 offered compulsory as well as elective courses, four offered
 compulsory and one elective courses only. 27 medical faculties supported
 US skills implementation. Abdominal US (n=25) was most common in teaching
 basic US skills. A learning objective catalogue was provided at 15 medical
 faculties. At 22 medical faculties, medical specialists were involved in
 undergraduate medical US education. 24 out of 26 medical faculties thought
 that peer-teaching is important to convey US skills. Medical faculties
 used the following methods to assess US skills: objective structured
 clinical examination (OSCE, n=7), non-standardized practical exams (n=4),
 non-standardized combined oral-practical exams (n=2) or direct observation
 of procedural skills (DOPS, n=1). 25 out of 26 medical faculties evaluated
 their US courses and 19 made suggestions for improvements in undergraduate
 medical US education. Conclusion: Medical faculty members in the
 German-speaking area have recognized the relevance of undergraduate
 medical US education. So far, courses are offered heterogeneously with
 rather short hands-on scanning time and high student-instructor ratio.
 Based on the results of this study and a literature review we suggest a
 possible framework and milestones on the way to a longitudinal
 undergraduate medical US curriculum.
description: Output of data
 setThe filled-out
 questionnaires (see readme file) were numbered, pre-coded and typed into a
 SPSS data sheet (IBM Statistics SPSS20, IBM Chicago). Contact data of
 participants and US representatives were listed in a separate data sheet
 to keep the analysis anonymous. Data on course duration were fragmentary
 and varied a lot from location to location, so that scoping review was
 obtained. If time specifications could not be confirmed by internet
 research, they were excluded from data analysis.OUTPUT_Dataset1_2_UUEGM_2018_03_10.docx
DOI: 10.5281/zenodo.18392057
title: decision in older patients dataset
DOI: 10.5281/zenodo.18392056
title: decision in older patients dataset
DOI: 10.5061/dryad.cb0d8ft
title: Data from: Fluctuating asymmetry and feather growth bars as biomarkers to assess habitat quality of shade coffee farming for avian diversity conservation

description: Shade coffee farming has been promoted as a means for combining
 sustainable use of forests and biodiversity conservation. With the
 increasing intensification of coffee production, methods of habitat
 quality assessment using measuring body conditions of individual birds may
 provide a more direct evidence of the contemporary quality of shade coffee
 farming for avian biodiversity before any demographic changes can be
 noticed. With this study, we applied fluctuating asymmetry on tarsi length
 and ptilochronology (relative growth bar width) to determine the habitat
 quality of shade coffee farming. The extend of fluctuating asymmetry in
 tarsus length showed no difference between shade coffee farming and
 natural forest in any of the studied avian functional guilds (forest
 specialist and generalist, as well as obligate and opportunistic
 insectivores). Similarly, no difference was found in growth bar width in
 any of these guilds with the exception of forest specialist birds which
 had narrower growth bars in shade coffee farming than in natural forests.
 No early sign of negative effect of shade coffee habitat on avian
 communities was noticed in the Ethiopian shade coffee using the biomarkers
 except on the forest specialist birds which were already reported to be
 less abundant in shade coffee farming from demographic studies. Shade
 coffee farming benefit avian diversity. However, the promotion of shade
 coffee farming should emphasis the conversion of degraded forest to shade
 coffee farming plantation but not the conversion of natural forest to
 shade coffee farming habitat as it adversely affect forest specialist
 birds.
description: Data
 1-tarsiData 1-tarsi: Tarsi
 length, distance from the back of inter-tarsal joint to the point where
 the toes bending an angle of 90 degree to the tarsus and was measured in
 the field to the nearest 0.1 mm using slide callipers.Data
 2-RectriceDtata 2-Rectrice: The
 rectrices measured with a calliper and weighted twice using an analytical
 balance to the nearest 0.1 mg.Data 3-Growth
 barsGrowth bar widths and
 total feather lengths measured to the nearest 0.01 mm with a digital
 calliper
DOI: 10.6084/m9.figshare.31160758
title: Small extracellular vesicles from DENV2-infected C6/36 cells show viral infection <i>in vitro</i> and <i>in vivo</i>

description: Dengue, transmitted by <i>Aedes</i> mosquitoes, can progress to severe symptoms like hemorrhagic fever and shock syndrome. While the virus and host immune response contribute to severity, other factors, such as small extracellular vesicles (sEVs), may play a role. sEVs mediate intercellular communication by transferring cellular components; however, their role <i>in vivo</i> infection remains unclear. We isolated and characterized sEVs from DENV-infected C6/36 mosquito cells, finding that they interact with mammalian cells and internalize the content. Using sEVs populations (with a size between 100 and 200 nm), we demonstrated enhanced infection in <i>in vitro</i> and <i>in vivo</i> murine models, including immunocompetent and immunosuppressed mice, which developed severe dengue-like symptoms. Our study reveals that sEVs from DENV-infected mosquito cells contribute to dengue pathogenesis, inducing severe symptoms in <i>in vivo</i> models, highlighting their potential role in disease progression and severe outcomes.
DOI: 10.6084/m9.figshare.31160758.v1
title: Small extracellular vesicles from DENV2-infected C6/36 cells show viral infection <i>in vitro</i> and <i>in vivo</i>

description: Dengue, transmitted by <i>Aedes</i> mosquitoes, can progress to severe symptoms like hemorrhagic fever and shock syndrome. While the virus and host immune response contribute to severity, other factors, such as small extracellular vesicles (sEVs), may play a role. sEVs mediate intercellular communication by transferring cellular components; however, their role <i>in vivo</i> infection remains unclear. We isolated and characterized sEVs from DENV-infected C6/36 mosquito cells, finding that they interact with mammalian cells and internalize the content. Using sEVs populations (with a size between 100 and 200 nm), we demonstrated enhanced infection in <i>in vitro</i> and <i>in vivo</i> murine models, including immunocompetent and immunosuppressed mice, which developed severe dengue-like symptoms. Our study reveals that sEVs from DENV-infected mosquito cells contribute to dengue pathogenesis, inducing severe symptoms in <i>in vivo</i> models, highlighting their potential role in disease progression and severe outcomes.
DOI: 10.5061/dryad.6v03s1s
title: Data from: Influence of a climatic gradient on genetic exchange between two oak species

description: Premise of the study. In plant groups with limited intrinsic barriers to
 gene flow, it is thought that environmental conditions can modulate
 interspecific genetic exchange. Oaks are known for limited barriers to
 gene flow among closely related species. Here, we use Quercus as a living
 laboratory in which to pursue a fundamental question in plant evolution:
 do environmental gradients restrict or promote genetic exchange between
 species? Methods. We focused on two North American oaks, the rare Q.
 dumosa and the widespread Q. berberidifolia. We sampled intensively along
 a contact zone in California. We sequenced restriction site associated DNA
 markers and measured vegetative phenotype. We tested for genetic exchange,
 the association with climate, and the effect on phenotype. Key results.
 There is evidence for genetic exchange between the species. Admixed plants
 are found in areas of intermediate climate, while less admixed plants are
 found at the extremes of the climatic gradient. Genetic and phenotypic
 patterns are out of phase in the zone of contact; some plants display the
 phenotype of one species but are genetically associated with another.
 Conclusions. Our results support the hypothesis that a strong climatic
 gradient can promote genetic exchange between species. The overall weak
 correlation between genotype and phenotype in the contact zone between the
 species suggests that genetic exchange can lead to the breakdown of trait
 combinations used to define species. This incongruency predicts ongoing
 problems for conservation of Q. dumosa, with implications for conservation
 of other oaks. Please be aware that if you ask to have your user record
 removed, we will retain your name in the records concerning manuscripts
 for which you were an author, reviewer, or editor. In compliance with data
 protection regulations, you may request that we remove your personal
 registration details at any time. (Use the following URL:
 https://www.editorialmanager.com/ajb/login.asp?a=r) Please contact the
 publication office if you have any questions.
description: Appendix
 D1Collection and
 sequencing information for individual plants.Appendix_D1.xlsxAppendix D2Filtered variant data.Appendix_D2.vcfAppendix D3Filtered variant data.Appendix_D3.vcfAppendix D4Filtered variant data.Appendix_D4.vcfAppendix D5Filtered variant data.Appendix_D5.vcfAppendix D6Phenotypic data for individual plants.Appendix_D6.xlsxAppendix D7Raw climatic data for sampling locales.Appendix_D7.xlsx
DOI: 10.5061/dryad.d4v7g74
title: Data from: Variation in life-history traits among Daphnia and its relationship to species-level responses to phosphorus limitation

description: Currently organisms are experiencing changes in their environment at an
 unprecedented rate. Therefore the study of the contributions to and
 responses in traits linked to fitness is crucial, as they have direct
 consequences on a population’s success in persisting under such change.
 Daphnia is used as a model organism as the genus contains keystone primary
 consumers in aquatic food webs. A life-history table experiment (LHTE)
 using four species of Daphnia was conducted to compare variation in
 life-history traits among species across two different environmental
 conditions (high and low phosphorous availability). Results indicate that
 the food quality environment had the most impact on life-history traits,
 while genetic contributions to traits were higher at the species-level
 than clonal-level. Higher trait variation and species-level responses to
 P-limitation was more evident in reproductive traits, while growth traits
 were found to be less affected by food quality and had less variation.
 Exploring trait variation and potential plasticity in organisms is
 increasingly important to consider as a potential mechanism for population
 persistence given the fluctuations in environmental stressors we are
 currently experiencing.
description: Life history traits of
 Daphnia in high and low phosphorusThis zip file contains
 raw data, data and calculations for analysis, R code and SPSS instructions
 used to compare growth and reproductive traits of four Daphnia species
 under high and low food quality environmental conditions from an
 experiment conducted in Norman, OK USA during the Fall of
 2013.Fall2013_Daphnia_lifehistorytraits.zip
DOI: 10.5061/dryad.141jn7c
title: Data from: The changing uses of herbarium data in an era of global change: an overview using automated content analysis

description: Widespread specimen digitization has greatly enhanced the use of herbarium
 data in scientific research. Publications using herbarium data have
 increased exponentially over the last century. Here, we review changing
 uses of herbaria through time with a computational text analysis of 13,702
 articles from 1923 to 2017 that quantitatively complements traditional
 review approaches. Although maintaining its core contribution to taxonomic
 knowledge, herbarium use has diversified from a few dominant research
 topics a century ago (e.g., taxonomic notes, botanical history, local
 observations), with many topics only recently emerging (e.g., biodiversity
 informatics, global change biology, DNA analyses). Specimens are now
 appreciated as temporally and spatially extensive sources of genotypic,
 phenotypic, and biogeographic data. Specimens are increasingly used in
 ways that influence our ability to steward future biodiversity. As we
 enter the Anthropocene, herbaria have likewise entered a new era with
 enhanced scientific, educational, and societal relevance.
description: Dataset
 S1Dataset of literature
 citations with abstracts included in topic models.