cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5691838.v1
title: Additional file 2: of Comparative ribosome profiling uncovers a dominant role for translational control in Toxoplasma gondii

description: Dataset. A) Average DESeq2 normalized RNA-seq and Ribo-seq read counts for all the transcripts tested for differential expression and ribosome occupancy. B) Genes exhibiting low ribosome occupancy but above background mRNA abundance. C) Genes exhibiting low mRNA abundance but above background ribosome occupancy. D) Genes that are differentially regulated both at the level of mRNA abundance and ribosome occupancy (RNAâ +â RIBO). E) Genes that are differentially regulated only at the level of mRNA abundance (RNA-Only). F) Genes that are differentially regulated only at the level of ribosome occupancy (RIBO-Only). G) Genes that exhibit significant differences in translation efficiency between in intercellular and extracellular parasites. (XLS 4356Â kb)
DOI: 10.6084/m9.figshare.5691829
title: Additional file 1: of A simple and accurate rule-based modeling framework for simulation of autocrine/paracrine stimulation of glioblastoma cell motility and proliferation by L1CAM in 2-D culture

description: NetLogo file of the modeling framework described in this article that simulates autocrine/paracrine stimulation of glioblastoma cell motility and proliferation by L1CAM in 2-D culture. The NetLogo software can be downloaded at https://ccl.northwestern.edu/netlogo/ . (NLOGO 28 kb)
DOI: 10.6084/m9.figshare.5691829.v1
title: Additional file 1: of A simple and accurate rule-based modeling framework for simulation of autocrine/paracrine stimulation of glioblastoma cell motility and proliferation by L1CAM in 2-D culture

description: NetLogo file of the modeling framework described in this article that simulates autocrine/paracrine stimulation of glioblastoma cell motility and proliferation by L1CAM in 2-D culture. The NetLogo software can be downloaded at https://ccl.northwestern.edu/netlogo/ . (NLOGO 28 kb)
DOI: 10.6084/m9.figshare.5691796
title: MOESM4 of Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

description: Additional file 4. Final assembly: Transcripts annotated with transcript length and expression level in TPM values. Also, if identified, transcripts were annotated by their orthologs. Otherwise, annotation was implemented using homologs or with possible open reading frames.
DOI: 10.6084/m9.figshare.5691796.v1
title: MOESM4 of Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

description: Additional file 4. Final assembly: Transcripts annotated with transcript length and expression level in TPM values. Also, if identified, transcripts were annotated by their orthologs. Otherwise, annotation was implemented using homologs or with possible open reading frames.
DOI: 10.6084/m9.figshare.5691781
title: MOESM3 of Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

description: Additional file 3. Homologous Transcripts: Transcripts with significant one-way BLAST hits against the UniProtKB/Swiss-Prot database.
DOI: 10.6084/m9.figshare.5691781.v1
title: MOESM3 of Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

description: Additional file 3. Homologous Transcripts: Transcripts with significant one-way BLAST hits against the UniProtKB/Swiss-Prot database.
DOI: 10.6084/m9.figshare.5691763
title: MOESM2 of Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

description: Additional file 2. Orthologous Transcripts: Transcripts with significant mutual BLAST hits against the UniProtKB/Swiss-Prot database.
DOI: 10.6084/m9.figshare.5691763.v1
title: MOESM2 of Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

description: Additional file 2. Orthologous Transcripts: Transcripts with significant mutual BLAST hits against the UniProtKB/Swiss-Prot database.
DOI: 10.6084/m9.figshare.5691745
title: MOESM1 of Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

description: Additional file 1. Coding Transcripts: Transcripts with long open reading frames (≥100 amino acids).
DOI: 10.6084/m9.figshare.5691745.v1
title: MOESM1 of Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

description: Additional file 1. Coding Transcripts: Transcripts with long open reading frames (≥100 amino acids).
DOI: 10.6084/m9.figshare.5691691
title: Additional file 1: of Indacaterol/glycopyrronium is cost-effective compared to salmeterol/fluticasone in COPD: FLAME-based modelling in a Swedish population

description: Methods and Results (additional details) (ZIP 535 kb)
DOI: 10.6084/m9.figshare.5691691.v1
title: Additional file 1: of Indacaterol/glycopyrronium is cost-effective compared to salmeterol/fluticasone in COPD: FLAME-based modelling in a Swedish population

description: Methods and Results (additional details) (ZIP 535 kb)
DOI: 10.6084/m9.figshare.5691676
title: Additional file 1: of Nevirapine- versus Efavirenz-based antiretroviral therapy regimens in antiretroviral-naive patients with HIV and Tuberculosis infections in India: a multi-centre study

description: Workbook. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.5691676.v1
title: Additional file 1: of Nevirapine- versus Efavirenz-based antiretroviral therapy regimens in antiretroviral-naive patients with HIV and Tuberculosis infections in India: a multi-centre study

description: Workbook. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.5691625
title: Additional file 1: Table S4. of Micro-structural bone changes in early rheumatoid arthritis persist over 1-yearÂ despite use of disease modifying anti-rheumatic drug therapy

description: HR-pQCT Time (Baseline vs 12-months) Main Effects Summary. Summary of data and statistical results for the Time main (Baseline vs 12-months) effect analyses. Table S5. HR-pQCT Interaction [Disease (RA vs NRA) x Time (Baseline vs 12-months)] Main Effects Summary. Summary of data and statistical results for the Interaction (Disease x Time) main effect analyses. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5691625.v1
title: Additional file 1: Table S4. of Micro-structural bone changes in early rheumatoid arthritis persist over 1-yearÂ despite use of disease modifying anti-rheumatic drug therapy

description: HR-pQCT Time (Baseline vs 12-months) Main Effects Summary. Summary of data and statistical results for the Time main (Baseline vs 12-months) effect analyses. Table S5. HR-pQCT Interaction [Disease (RA vs NRA) x Time (Baseline vs 12-months)] Main Effects Summary. Summary of data and statistical results for the Interaction (Disease x Time) main effect analyses. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5691622
title: Additional file 7: Table S6. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: Significant associations between bacterial taxa and nutrition, medications, and other clinical factors, within each of the three phases of the microbiome. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.5691622.v1
title: Additional file 7: Table S6. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: Significant associations between bacterial taxa and nutrition, medications, and other clinical factors, within each of the three phases of the microbiome. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.5691604
title: Additional file 6: Table S5. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: Significant results of linear discriminant analysis of putative functional features of microbial communities across the three Phases of the microbiome. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.5691604.v1
title: Additional file 6: Table S5. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: Significant results of linear discriminant analysis of putative functional features of microbial communities across the three Phases of the microbiome. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.5691595
title: Additional file 9: Category 1. of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Cortical Domain genes. Individual developmental expression profiles for each ACD gene including standard deviation error bars for all time points are shown. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.5691595.v1
title: Additional file 9: Category 1. of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Cortical Domain genes. Individual developmental expression profiles for each ACD gene including standard deviation error bars for all time points are shown. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.5691583
title: Additional file 5: Table S4. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: A. Results of differential abundance tests (metagenomeSeq zero-inflated Gaussian) of all bacterial taxa between microbiome phases 1 and 2. B. Results of differential abundance tests (metagenomeSeq zero-inflated Gaussian) of all bacterial taxa between microbiome phases 2 and 3. C. Results of differential abundance tests (metagenomeSeq zero-inflated Gaussian) of all bacterial taxa between microbiome phases 1 and 3. (ZIP 536Â kb)
DOI: 10.6084/m9.figshare.5691583.v1
title: Additional file 5: Table S4. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: A. Results of differential abundance tests (metagenomeSeq zero-inflated Gaussian) of all bacterial taxa between microbiome phases 1 and 2. B. Results of differential abundance tests (metagenomeSeq zero-inflated Gaussian) of all bacterial taxa between microbiome phases 2 and 3. C. Results of differential abundance tests (metagenomeSeq zero-inflated Gaussian) of all bacterial taxa between microbiome phases 1 and 3. (ZIP 536Â kb)
DOI: 10.6084/m9.figshare.5691574
title: Additional file 8: of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Gene Ontology Search Query: Cell Junction. List of all genes and expression profiles for time points 0â 14 hpf generated for a GO Search: Cell Junction (related to Figs. 5-7). Search hits are generated for the Biological Process GO category that contains a Cell Junction annotation. The table was organized by sorting the 2 hpf FPKM expression values from large-to-small. All values below 1 FPKM at 2 hpf were excluded. The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 144Â kb)
DOI: 10.6084/m9.figshare.5691574.v1
title: Additional file 8: of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Gene Ontology Search Query: Cell Junction. List of all genes and expression profiles for time points 0â 14 hpf generated for a GO Search: Cell Junction (related to Figs. 5-7). Search hits are generated for the Biological Process GO category that contains a Cell Junction annotation. The table was organized by sorting the 2 hpf FPKM expression values from large-to-small. All values below 1 FPKM at 2 hpf were excluded. The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 144Â kb)
DOI: 10.6084/m9.figshare.5691562
title: Additional file 4: Table S3. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: Kruskal-Wallis analysis of variance of all bacterial taxa across the three Phases of the microbiome. (XLSX 109Â kb)
DOI: 10.6084/m9.figshare.5691562.v1
title: Additional file 4: Table S3. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: Kruskal-Wallis analysis of variance of all bacterial taxa across the three Phases of the microbiome. (XLSX 109Â kb)
DOI: 10.6084/m9.figshare.5691556
title: Additional file 7: of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Gene Ontology Search Query: Cell Adhesion. List of all genes and expression profiles for time points 0â 14 hpf generated for a GO Search: Cell Adhesion (related to Figs. 5-7). Search hits are generated for the Biological Process GO category that contains a Cell Adhesion annotation. The table was organized by sorting the 2 hpf FPKM expression values from large-to-small. All values below 1 FPKM at 2 hpf were excluded. The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 135Â kb)
DOI: 10.6084/m9.figshare.5691556.v1
title: Additional file 7: of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Gene Ontology Search Query: Cell Adhesion. List of all genes and expression profiles for time points 0â 14 hpf generated for a GO Search: Cell Adhesion (related to Figs. 5-7). Search hits are generated for the Biological Process GO category that contains a Cell Adhesion annotation. The table was organized by sorting the 2 hpf FPKM expression values from large-to-small. All values below 1 FPKM at 2 hpf were excluded. The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 135Â kb)
DOI: 10.6084/m9.figshare.5691538
title: Additional file 6: of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Gene Ontology Search Query: Cell Polarity Genes. List of all genes and expression profiles for time points 0â 14 hpf generated for a GO Search: Cell Polarity (related to Figs. 3-7). Search hits are generated for the Biological Process GO category that contains a Cell Polarity annotation. The table was organized by sorting the 2 hpf FPKM expression values from large-to-small. All values below 1 FPKM at 2 hpf were excluded. The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 76Â kb)
DOI: 10.6084/m9.figshare.5691538.v1
title: Additional file 6: of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Gene Ontology Search Query: Cell Polarity Genes. List of all genes and expression profiles for time points 0â 14 hpf generated for a GO Search: Cell Polarity (related to Figs. 3-7). Search hits are generated for the Biological Process GO category that contains a Cell Polarity annotation. The table was organized by sorting the 2 hpf FPKM expression values from large-to-small. All values below 1 FPKM at 2 hpf were excluded. The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 76Â kb)
DOI: 10.6084/m9.figshare.5691517
title: Additional file 5: of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: RNA-seq data for each ACD gene within the four categories during early development of P.dumerilii. Quantitative expression levels are shown as FPKM for each gene at two-hour time points from 2 to 14 hpf (related to Figs. 3-7). Independent measurements for two biological replicates of each embryonic stage and for technical replicates of eight samples are shown. Data can be found on the on Pdumbase http://pdumbase.gdcb.iastate.edu/platynereis/controller.php?action=home [63]. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.5691517.v1
title: Additional file 5: of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: RNA-seq data for each ACD gene within the four categories during early development of P.dumerilii. Quantitative expression levels are shown as FPKM for each gene at two-hour time points from 2 to 14 hpf (related to Figs. 3-7). Independent measurements for two biological replicates of each embryonic stage and for technical replicates of eight samples are shown. Data can be found on the on Pdumbase http://pdumbase.gdcb.iastate.edu/platynereis/controller.php?action=home [63]. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.5691493
title: Additional file 10: Table S9. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: Linear regression analysis of significant taxa for two variables (genera in P1 and genera in meconium), those that are significant for both variables and those that are unique to each (P1 or meconium). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5691493.v1
title: Additional file 10: Table S9. of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

description: Linear regression analysis of significant taxa for two variables (genera in P1 and genera in meconium), those that are significant for both variables and those that are unique to each (P1 or meconium). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5691484
title: Additional file 7: Table S7. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for structural rearrangements in miscarried/spontaneously aborted fetuses. Tabular data presenting details of miscarried/spontaneously aborted fetuses with structural rearrangement: karyotype, parental ages, proportion of abnormal cell line(s), reasons for cytogenetic testing, and probality of maternal cell contamination in female specimens. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.5691484.v1
title: Additional file 7: Table S7. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for structural rearrangements in miscarried/spontaneously aborted fetuses. Tabular data presenting details of miscarried/spontaneously aborted fetuses with structural rearrangement: karyotype, parental ages, proportion of abnormal cell line(s), reasons for cytogenetic testing, and probality of maternal cell contamination in female specimens. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.5691472
title: Additional file 6: Table S6. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for apparently balanced rearrangements. Tabular data presenting details of carriers of mosaicism for apparently balanced rearrangement: karyotype, parental ages, proportion of abnormal cell line(s), confirmation testing, indications for cytogenetic testing, outcome of the pregnancy. (XLSX 7Â kb)
DOI: 10.6084/m9.figshare.5691472.v1
title: Additional file 6: Table S6. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for apparently balanced rearrangements. Tabular data presenting details of carriers of mosaicism for apparently balanced rearrangement: karyotype, parental ages, proportion of abnormal cell line(s), confirmation testing, indications for cytogenetic testing, outcome of the pregnancy. (XLSX 7Â kb)
DOI: 10.6084/m9.figshare.5691454
title: Additional file 5: Table S5. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for other unbalanced rearrangements. Tabular data presenting details of carriers of mosaicism for other unbalanced rearrangement: karyotype, parental ages, proportion of abnormal cell line(s), confirmation testing, indications for cytogenetic testing, outcome of the pregnancy. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.5691454.v1
title: Additional file 5: Table S5. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for other unbalanced rearrangements. Tabular data presenting details of carriers of mosaicism for other unbalanced rearrangement: karyotype, parental ages, proportion of abnormal cell line(s), confirmation testing, indications for cytogenetic testing, outcome of the pregnancy. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.5691439
title: Additional file 4: Table S4. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for unbalanced translocations. Tabular data presenting details of carriers of mosaicism for unbalanced translocation: karyotype, parental ages, proportion of abnormal cell line(s), confirmation testing, indications for cytogenetic testing, outcome of the pregnancy. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.5691439.v1
title: Additional file 4: Table S4. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for unbalanced translocations. Tabular data presenting details of carriers of mosaicism for unbalanced translocation: karyotype, parental ages, proportion of abnormal cell line(s), confirmation testing, indications for cytogenetic testing, outcome of the pregnancy. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.5691424
title: Additional file 12: Category 4. of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Cell-cell Adhesion and cell recognition complexes genes. Individual developmental expression profiles for each ACD gene including standard deviation error bars for all time points are shown. (XLSX 103Â kb)
DOI: 10.6084/m9.figshare.5691424.v1
title: Additional file 12: Category 4. of The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii

description: Cell-cell Adhesion and cell recognition complexes genes. Individual developmental expression profiles for each ACD gene including standard deviation error bars for all time points are shown. (XLSX 103Â kb)
DOI: 10.6084/m9.figshare.5691418
title: Additional file 3: Table S3. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for ring chromosomes. Tabular data presenting details of carriers of mosaicism for ring chromosomes: karyotype, parental ages, proportion of abnormal cell line(s), confirmation testing, indications for cytogenetic testing, outcome of the pregnancy. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.5691418.v1
title: Additional file 3: Table S3. of Mosaicism for structural non-centromeric autosomal rearrangement in prenatal diagnoses: evidence for sex-specific selection against chromosomal abnormalities

description: Mosaicism for ring chromosomes. Tabular data presenting details of carriers of mosaicism for ring chromosomes: karyotype, parental ages, proportion of abnormal cell line(s), confirmation testing, indications for cytogenetic testing, outcome of the pregnancy. (XLSX 6Â kb)
DOI: 10.6084/m9.figshare.5691400
title: MOESM1 of Note on the PCR threshold standard curve

description: Additional file 1. Data extracted from Figure 2A of [2].
DOI: 10.6084/m9.figshare.5691400.v1
title: MOESM1 of Note on the PCR threshold standard curve

description: Additional file 1. Data extracted from Figure 2A of [2].