cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/xk08-y895
title: Acute appendicitis, unspecified - Male, 27 - Tissue image [6270730022346581]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 27Clinical description: Acute appendicitis.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Acute appendicitis, unspecifiedResult of the histopathological examination: Phlegmonous appendicitis.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: COLONTissue: AppendixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/1t19-w685
title: Acute appendicitis, unspecified - Male, 31 - Tissue image [6270730022348161]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 31Clinical description: Acute appendicitis.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Acute appendicitis, unspecifiedResult of the histopathological examination: Phlegmonous appendicitis.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: COLONTissue: AppendixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/zzhk-9388
title: Tubular carcinoma - Female, 65 - Tissue image [6270730022325041]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 65Clinical description: Palpable tumor of left breast, diameter 1,5 cm. 16 x 12 mm hypoechoic irregular tumor on ultrasound. Suspicion of carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Tubular carcinomaResult of the histopathological examination: Invasive breast carcinoma (probably tubular type) NHG 1 (1+2+1: 0 mitoses/10HPF): ER+, PR+, HER2 2+ (FISH: no amplification), Ki-67 5%.Sample:Material: FFPECollecting method: Core-needle biopsyTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/IHCStaining: Not applicableAntibody: HER-2Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/6w9f-3j60
title: Invasive breast carcinoma of no special type - Female, 63 - Tissue image [6270730022327111]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 63Clinical description: Tumor of right breast. 15 x 13 mm hypoechoic tumor on ultrasound. Suspicion of breast carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Invasive breast carcinoma of no special typeResult of the histopathological examination: Invasive breast carcinoma (NOS) NHG 3 (3+3+2: 9 mitoses/10 HPF) (e-cadherin+) and ductal carcinoma in situ (DCIS) NG3,  LVI+. ER-, PR-, HER2-, Ki-67 80%.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/IHCStaining: Not applicableAntibody: ERTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/9ct5-hx72
title: Acute appendicitis, unspecified - Male, 24 - Tissue image [6270730022348891]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 24Clinical description: Acute appendicitis.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Acute appendicitis, unspecifiedResult of the histopathological examination: Phlegmonous appendicitis.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: COLONTissue: AppendixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/z02w-2x39
title: Lobular carcinoma, NOS - Female, 41 - Tissue image [6270730022323751]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 41Clinical description: Tumor of left breast.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Lobular carcinoma, NOSResult of the histopathological examination: Lobular breast carcinoma (e-cadherin-) NHG 2 (3+2+1: 0 mitoses/10HPF): ER+, PR+, HER2 2+ (FISH: no amplification), Ki-67 10%. Lobular neoplasia is present.Sample:Material: FFPECollecting method: Core-needle biopsyTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/IHCStaining: Not applicableAntibody: E-CadherinTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/kp10-0258
title: Lobular carcinoma, NOS - Female, 41 - Tissue image [6270730022317671]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 41Clinical description: Tumor of left breast.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Lobular carcinoma, NOSResult of the histopathological examination: Lobular breast carcinoma (e-cadherin-) NHG 2 (3+2+1: 0 mitoses/10HPF): ER+, PR+, HER2 2+ (FISH: no amplification), Ki-67 10%. Lobular neoplasia is present.Sample:Material: FFPECollecting method: Core-needle biopsyTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/zpap-4h18
title: Tenosynovial giant cell tumor, localised - Male, 57 - Tissue image [6270730022334581]

description: This is the histopathological image of OTHER AND ILL-DEFINED SITES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: Tumor of left foot.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GIANT CELL TUMORSDiagnosis: Tenosynovial giant cell tumor, localisedResult of the histopathological examination: Tenosynovial giant cell tumor, localized type: CKAE1/AE3-, S100-, CD45-, CD34-, CD31+, D2-40+, CD68+, SMA-, MyoD1-, DES single cells +.Sample:Material: FFPECollecting method: Excision of lesionsTopography: OTHER AND ILL-DEFINED SITESOrgan: OTHER AND ILL-DEFINED SITESTissue: Foot, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CD 68Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/nxwk-2563
title: Mixed germ cell tumor - Male, 36 - Tissue image [6270730022333921]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 36Clinical description: Tumor of left testis.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Mixed germ cell tumorResult of the histopathological examination: Mixed germ cell tumor: embryonal carcinoma, yolk sac tumor, teratoma. Germ cell neoplasia in situ is present.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Testicle, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/gpz2-gt19
title: Invasive breast carcinoma of no special type - Female, 48 - Tissue image [627073002232401]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 48Clinical description: 19 x 15 mm hypoechoic spicular tumor of right breast on ultrasound.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Invasive breast carcinoma of no special typeResult of the histopathological examination: Invasive breast carcinoma (NOS) NHG 3 (3+3+3: 26 mitoses/10 HPF): ER-, PR-, HER2-, Ki-67 70%.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/va5f-2541
title: Follicular carcinoma, NOS - Female, 27 - Tissue image [6270730022325451]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 27Clinical description: Well-circumscribed tumor of right thyroid lobe. Diameter 3,5 cm. FNAC- follicular neoplasm (Bethesda IV).Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Follicular carcinoma, NOSResult of the histopathological examination: Follicular thyroid carcinoma, widely invasive (extensive invasion of thyroid is present). Vascular invasion is present.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid glandType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/h6cv-1k93
title: Acute appendicitis, unspecified - Male, 39 - Tissue image [6270730022342461]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 39Clinical description: Acute appendicitis.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Acute appendicitis, unspecifiedResult of the histopathological examination: Phlegmonous appendicitis.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: COLONTissue: AppendixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/sh4e-1z29
title: Lobular carcinoma, NOS - Female, 41 - Tissue image [6270730022322611]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 41Clinical description: Tumor of left breast. Core needle biopsy: lobular breast carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Lobular carcinoma, NOSResult of the histopathological examination: Lobular breast carcinoma NHG2 (3+2+1: 0 mitoses/10 HPF) (e-cadherin-, p120 cytoplasmic reaction, CK14- in carcinoma cells, p63- in carcinoma cells). Lobular neoplasia is present (LCIS, ALH, pagetoid spread).Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Inner breastType of staining: positive/IHCStaining: Not applicableAntibody: CK 14Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/25nk-xj88
title: Pilonidal cyst - Male, 30 - Tissue image [6270730022332771]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 30Clinical description: Pilonidal cyst.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XII - Diseases of the skin and subcutaneous tissueDiagnosis: Pilonidal cystResult of the histopathological examination: Pilonidal cyst.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of sacrococcygeal regionType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/dnrm-8190
title: Tubular carcinoma - Female, 65 - Tissue image [6270730022329361]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 65Clinical description: Palpable tumor of left breast, diameter 1,5 cm. 16 x 12 mm hypoechoic irregular  tumor on ultrasound. Core needle biopsy: invasive breast carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Tubular carcinomaResult of the histopathological examination: Invasive breast carcinoma (tubulo-cribriform type) NHG1 (1+2+1: 0 mitoz/10 HPF).Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/33qv-tm97
title: Epithelial-myoepithelial carcinoma - Female, 65 - Tissue image [6270730022323261]

description: This is the histopathological image of OTHER AND UNSPECIFIED MAJOR SALIVARY GLANDS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 65Clinical description: 12 x 7 mm hypoechoic tumor of left submandibular gland on ultrasound.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: COMPLEX EPITHELIAL NEOPLASMSDiagnosis: Epithelial-myoepithelial carcinomaResult of the histopathological examination: Epithelial- myoepitheliel carcinoma of salivary gland. Ductal cells: CKAE1/AE3+, CK7+, EMA+. Myoepithelial cells: calponina +, p63+.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: OTHER AND UNSPECIFIED MAJOR SALIVARY GLANDSTissue: Submandibular glandType of staining: positive/IHCStaining: Not applicableAntibody: CK 7Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/mm0x-x233
title: Basal cell carcinoma, NOS - Female, 83 - Tissue image [6270730022329911]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 83Clinical description: Light brown lesion of skin of dorsum with dimensions 2,1 x 2,4 x 0,4 cm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: BASAL CELL NEOPLASMSDiagnosis: Basal cell carcinoma, NOSResult of the histopathological examination: Basal cell carcinoma of skin.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of backType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6069/shzj-bp03
title: Targeted validation of significantly altered semen proteins in COVID-19 patients

description: The current global outbreak of COVID-19 has significantly impacted several organ systems.  Male reproductive organs are among the potential targets of SARS-CoV-2 infection owing to the presence of abundant viral receptors; ACE2 and TMPRSS2 in the testis. However, the questions pertaining to the long term effects of SARS-CoV-2 infection on male fertility are still unanswered. 
For this study, we procured the semen samples from COVID-19 recovered patients and performed mass spectrometry based proteomic studies to understand the impact of the disease on the biological processes involved in reproductive health.
DOI: 10.6084/m9.figshare.20156703
title: Development and validation of skeletal/global mechanisms describing TMP-based flame inhibition

description: Phosphorus-based chemical compounds such as trimethylphosphate (TMP) and dimethylmethylphosphonate (DMMP) are widely used as fire suppressants. The detailed chemical kinetic mechanism by Jayaweera et al. [1] is frequently used to describe the flame inhibition process. The elementary reaction steps can be categorised into inhibitor molecule decomposition steps and radical recombination steps. The present work shows that the inhibitor decomposition process can be adequately represented by a single irreversible step for TMP. Subsequently, graph-based mechanism reduction techniques and sensitivity analysis are employed to extract the key catalytic inhibition reactions. The resultant skeletal kinetic mechanism consists of 4 species and 7 reactions. The present work also proposes a global mechanism containing 3 species and 3 reactions. In the global model, flame inhibition is described by a 2-step model. These models are validated in premixed and diffusion flame environments. Excellent agreement with the experimental measurements and detailed model predictions are obtained. Development of the skeletal/global models reduces the computational time by around 82% compared to the detailed model.
DOI: 10.6084/m9.figshare.20156703.v1
title: Development and validation of skeletal/global mechanisms describing TMP-based flame inhibition

description: Phosphorus-based chemical compounds such as trimethylphosphate (TMP) and dimethylmethylphosphonate (DMMP) are widely used as fire suppressants. The detailed chemical kinetic mechanism by Jayaweera et al. [1] is frequently used to describe the flame inhibition process. The elementary reaction steps can be categorised into inhibitor molecule decomposition steps and radical recombination steps. The present work shows that the inhibitor decomposition process can be adequately represented by a single irreversible step for TMP. Subsequently, graph-based mechanism reduction techniques and sensitivity analysis are employed to extract the key catalytic inhibition reactions. The resultant skeletal kinetic mechanism consists of 4 species and 7 reactions. The present work also proposes a global mechanism containing 3 species and 3 reactions. In the global model, flame inhibition is described by a 2-step model. These models are validated in premixed and diffusion flame environments. Excellent agreement with the experimental measurements and detailed model predictions are obtained. Development of the skeletal/global models reduces the computational time by around 82% compared to the detailed model.
DOI: 10.15151/esrf-es-814171402
title: Pressure-induced condensation and fluorescence in organic anhydrides

description: Carbonyl–carbonyl (CC) interactions are emerging noncovalent interactions found in many small and macro molecules. They are of quantum-mechanicalnature, where overlap of n and pi* wavefunctions occurs along the trajectory which ensures the maximum orbital overlay. In some of the organic anhydride (OA)crystals, the intermolecular CC contacts along this trajectory are exceptionally short and direct the molecules for the nucleophilic addition reaction . We recently discovered a crystal structure distortion and dramatic change in C=O vibrational modes in pyromellitic dianhydride at high pressure. We associate it with intracrystal polymerization, as a result of an effective overlap of C=O groups. In this proposal, we aim to systematically study a series of simple maleic anhydride derivatives, using high-pressure X-ray diffraction technique, in order to derive general rules for pressure-driven condensation in OA crystals, depending on their electronic and supramolecular structure.