cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.c2fqz618p
title: Data for: Habitat suitability of the Persian leopard along the Iran-Iraq border

description: Habitat fragmentation has major negative impacts on wildlife populations
 and the connectivity could reduce these negative impacts. This study was
 conducted to assess habitat suitability and structural connectivity of the
 Persian leopard along the Iran-Iraq border (i.e., the Zagros Mountains)
 and compare the situation of identified core habitats and connectivity
 with existing conservation areas (CAs). An ensemble modeling approach
 resulting from five models was used to predict habitat suitability. To
 identify core habitats and corridors along the Iran-Iraq border, factorial
 least-cost path analyses were applied. The results revealed that
 topographic roughness, distance to conservation areas, annual
 precipitation, vegetation/cropland density and distance to rivers were the
 most influential variables for predicting the occurrence of the Persian
 leopard in the study area. By an estimated dispersal distance of 82 km
 (suggested by previous studies), three core habitats were identified (two
 cores in Iran and one core in Iraq). The largest cores were located in the
 south and the center of the study area, which had the highest connectivity
 priorities. The connectivity from these cores was maintained to the core
 within the Iraqi side. Only about one-fifth of detected core habitats and
 relative corridors were protected by CAs in the study area. Detected core
 habitats and connectivity areas in this study could be an appropriate road
 map to accomplish the CAs network along the Iran-Iraq border regarding
 Persian leopard conservation. Establishing transboundary CAs, particularly
 in the core habitat located in the center of the study area, is strongly
 recommended to conserve existing large carnivores, including the Persian
 leopard.
DOI: 10.5061/dryad.dfn2z352k
title: A global 0.05° dataset for gross primary production of sunlit and shaded vegetation canopies (1992–2020)

description: Distinguishing gross primary production of sunlit and shaded leaves
 (GPPsun and GPPshade) is crucial for improving our understanding of the
 underlying mechanisms regulating long-term GPP variations. Here we produce
 a global 0.05°, 8-day dataset for GPP, GPPshade and GPPsun over 1992-2020
 using an updated two-leaf light use efficiency model (TL-LUE), which is
 driven by the GLOBMAP leaf area index, CRUJRA meteorology, and ESA-CCI
 land cover. Our products estimate the mean annual totals of global GPP,
 GPPsun, and GPPshade over 1992-2020 at 125.0±3.8 (mean ± std) Pg C a-1,
 50.5±1.2 Pg C a-1, and 74.5±2.6 Pg C a-1, respectively, in which EBF
 (evergreen broadleaf forest) and CRO (crops) contribute more than half of
 the totals. They show clear increasing trends over time, in which the
 trend of GPP (also GPPsun and GPPshade) for CRO is distinctively greatest,
 and that for DBF (deciduous broadleaf forest) is relatively large and
 GPPshade overwhelmingly outweighs GPPsun. This new dataset advances our
 in-depth understanding of large-scale carbon cycle processes and dynamics.
description: The dataset used a revised two-leaf light use efficiency (TL-LUE)
 model with an added CO<sub>2</sub> concentration regular
 scalar and the modified temperature scalar. These products are driven by
 the GLOBMAP leaf area index (GLOBMAP-LAI), Climatic Research Unit and
 Japanese reanalysis (CRUJRA 2.2) meteorological data, and European Space
 Agency Climate Change Initiative Land Cover (ESA-CCI) data.
description: The units of three temporal resolutions (8-day, monthly, annual)
 are gC m<sup>-2</sup> 8day<sup>-1</sup>, gC
 m<sup>-2</sup> month<sup>-1</sup> and gC
 m<sup>-2</sup> a<sup>-1</sup>, respectively. And
 the scale factor of the monthly data is 0.1, that of the 8-day data is
 0.01. In the dataset, in order to ensure the authenticity, we did not
 delete or modify a small number of abnormally high values (caused by LAI).
 Therefore, when using this dataset, you can set thresholds to remove the
 anomalies.
DOI: 10.5061/dryad.1vhhmgqtd
title: Data from: Predicting range shifts of pikas (Mammalia, Ochotonidae) in China under scenarios incorporating land-use change, climate change, and dispersal limitations

description: Two of the most important forces affecting biodiversity are land-use
 change (LUC) and global climate change (GCC). Previous studies have
 modeled their impacts on species separately and together, but few have
 done so for multiple species with dispersal limitations incorporated into
 the models. We integrate species distribution models plus a dispersal
 model to predict LUC and GCC impacts on the ranges of five species of
 pikas in the Qinghai-Tibet Plateau region of China. Pikas are sensitive to
 land-use and climate change, and have limited dispersal abilities. The
 predicted impacts of LUC and GCC on pikas vary between species as well as
 between LUC and GCC projections. Incorporation of dispersal limitations
 appreciably restricts the amount of colonized habitat. For all five
 species, the amount of habitat abandoned or colonized when LUC and GCC are
 modeled together is less than the sum of LUC and GCC modeled separately.
 Three of the five species experience a net increase in occupied habitat by
 2080 relative to their current ranges under all modeled projections.
 However, relative to a “Dispersal Only” baseline scenario that assumes no
 environmental change but continued range expansion into suitable,
 unoccupied habitat, all five species suffer a net loss of occupied habitat
 by 2080 under some or all projections. Predictions of future distributions
 of species based solely on LUC or GCC, as well as predictions assuming
 additive impacts, can be misleading. Inclusion of dispersal limitations in
 models markedly alters predicted future distributions of species. The use
 of a “Dispersal Only” scenario provides a different and perhaps more
 accurate way to gauge net impacts to species. Future work should consider
 incorporating all these parameters to better predict the impacts of LUC
 and GCC on biodiversity.
description: The uploaded occurrence records were collected from online
 sources (Global Biodiversity Information Facility, iNaturalist, GenBank),
 museum collections, field records provided by scientists, and the
 literature. These occurrence records have been through the following
 quality controls: 1. To avoid potential spatial autocorrelation among
 occurrence records or uneven sampling, we thinned the records using the
 package spThin, with a thinning distance of 10-km (Aiello-Lammens et al.
 2015); 2. We then removed occurrence records with potentially erroneous
 coordinates by checking: (a) if the coordinates fell within the species’
 IUCN polygons; (b) if the corresponding elevation fell within the
 elevational range described by the IUCN Red List (after adding a buffer of
 100 m); and (c) if the species’ habitat types as described in the IUCN Red
 List appear in that grid cell according to the LUH2 data (habitat types
 described in the IUCN Red List and in LUH2 were reclassified as forest vs.
 non-forest for matching purposes).
DOI: 10.5281/zenodo.18397935
title: COVID-19-Hospitalisierungen in Deutschland

description: Im Datensatz "COVID-19-Hospitalisierungen in Deutschland" des Robert Koch-Institutswerden täglich aktualisierte Informationen zu Hospitalisierungen im Zusammenhang mit COVID-19 basierend auf den Meldungen nach dem Infektionsschutzgesetz (IfSG) bereitgestellt. Neben tagesaktuellen Fallzahlen und Inzidenzen auf Bundes- und Länderebene enthält der Datensatz auch modellgestützte Schätzungen verzögert gemeldeter Hospitalisierungen mittels Nowcasting. Ziel ist es, die tatsächliche Belastung des Gesundheitssystems durch COVID-19 besser abzubilden, insbesondere durch die Berechnung adjustierter 7-Tage-Hospitalisierungsinzidenzen.
DOI: 10.5061/dryad.j9kd51cd5
title: Genomic signatures of inbreeding and mutation load in a threatened rattlesnake

description: Theory predicts that threatened species living in small populations will
 experience high levels of inbreeding that will increase their genetic
 load, but recent work suggests that the impact of load may be minimized by
 purging resulting from long-term population bottlenecks. Empirical studies
 that examine this idea using genome-wide estimates of inbreeding and
 genetic load in threatened species are limited. Here we use individual
 genome resequencing data to compare levels of inbreeding, levels of
 genetic load (estimated as mutation load), and population history in
 threatened Eastern massasauga rattlesnakes (Sistrurus catenatus), which
 exist in small isolated populations, and closely-related yet outbred
 Western massasauga rattlesnakes (S. tergeminus). In terms of inbreeding,
 S. catenatus genomes had a greater number of ROHs of varying sizes,
 indicating sustained inbreeding through repeated bottlenecks when compared
 to S. tergeminus. At the species level, outbred S. tergeminus had higher
 genome-wide levels of mutation load in the form of greater numbers of
 derived deleterious mutations compared to S. catenatus, presumably due to
 long-term purging of deleterious mutations in S. catenatus. In contrast,
 mutations that escaped species-level drift effects within S. catenatus
 populations were in general more frequent and more often found in
 homozygous genotypes than in S. tergeminus, suggesting a reduced
 efficiency of purifying selection in smaller S. catenatus populations for
 most mutations. Our results support an emerging idea that the historical
 demography of a threatened species has a significant impact on the type of
 genetic load present, which impacts implementation of conservation actions
 such as genetic rescue.
DOI: 10.5061/dryad.wh70rxwnx
title: Fungal fruit body assemblages are tougher in harsh microclimates

description: Forest species are affected by macroclimate, however, the microclimatic
 variability can be more extreme and change through climate change. Fungal
 fruiting community composition was affected by microclimatic differences.
 Here we ask whether differences in the fruiting community can be explained
 by morphological traits of the fruit body, which may help endure harsh
 conditions. We used a dead wood experiment and
 macrofungal fruit body size, color, and toughness. We exposed
 logs of two host tree species under closed and experimentally opened
 forest canopies in a random-block design for four years and identified all
 visible fruit bodies of two fungal lineages (Basidio- and
 Ascomycota). We found a consistently higher proportion of
 tough-fleshed species in harsher microclimates under open canopies.
 Although significant, responses of community fruit body size and color
 lightness were inconsistent across lineages. We suggest
 the toughness-protection hypothesis, stating that
 tough-fleshed fruit bodies protect from microclimatic extremes by reducing
 dehydration. Our study suggests that the predicted increase of
 microclimatic harshness with climate change will likely decrease the
 presence of soft-fleshed fruit bodies. Whether harsh microclimates also
 affect the mycelium of macrofungi with different fruit body morphology
 would complement our findings and increase predictability under climate
 change.
description: Please see details in the published article
description: This is data together with an R script. 
 Please exchange line 116 with our path:<br>
 setwd("~PATHTOFILES") In this location both
 files (data and R script) should be. Then you can just run the analysis in
 R.
DOI: 10.5061/dryad.rn8pk0pbc
title: Data from: The little fishes that could: smaller fishes demonstrate slow body size evolution but faster speciation in the family Percidae

description: Body size impacts numerous aspects of organismal biology and many factors
 have been invoked to explain body size distributions in a macroecological
 and macroevolutionary context. Body size in the freshwater fish family
 Percidae is strongly right-skewed (i.e, dominated by small sizes), with
 small body size potentially being associated with fast water habitats. We
 constructed a new species-level, multi-locus, time-calibrated phylogeny of
 Percidae, and used it to test for changes in the rate and pattern of
 maximum body size evolution. We also tested whether speciation rates
 varied as a function of body size. We found that Etheostomatinae evolved
 towards a smaller adaptive optimum in body size compared to the other
 subfamilies of Percidae, and that this shift was associated with a
 reduction in the rate of body size evolution. Speciation rates were
 associated with body size across percids, showing a peak around small to
 medium body size. Small body size appears to partially, but not fully,
 explain the diversity of small percids, as many darters fall well below
 the “optimum” body size. Reinforcement of selection for small body size
 via selection for novel morphologies or via sexual selection may help to
 fully explain the remarkable diversity of the darter radiation.
description: XML files for BEAST 2 analyses provided, as well as all genbank
 data for selected fasta files. Results from 3 BEAST2 runs for the
 constrained and unconstrained topologies given as the combined posterior
 distribution of trees and the maximum clade credibility
 chronogram.
DOI: 10.5061/dryad.4b8gthtd7
title: Finite element models from: Mechanical compensation in the evolution of the early hominin feeding apparatus

description: Australopiths, a group of hominins from the Plio-Pleistocene of Africa,
 are characterized by derived traits in their crania hypothesized to
 strengthen the facial skeleton against feeding loads and increase the
 efficiency of bite force production. The crania of robust australopiths
 are further thought to be stronger and more efficient than those of
 gracile australopiths.  Results of prior mechanical
 analyses have been broadly consistent with this hypothesis, but here we
 show that the predictions of the hypothesis with respect to mechanical
 strength are not met:  some gracile australopith crania
 are as strong as that of a robust australopith, and the strength of
 gracile australopith crania overlaps substantially with that of chimpanzee
 crania.  We hypothesize that the evolution of cranial
 traits that increased the efficiency of bite force production in
 australopiths may have simultaneously weakened the face, leading to the
 compensatory evolution of additional traits that reinforced the facial
 skeleton.  The evolution of facial form in early
 hominins can therefore be thought of as a trade-off between the need to
 increase the efficiency of bite force production and the need to maintain
 the structural integrity of the face.  This may have
 implications for interpreting cranial form in other vertebrates.
description: Details regarding the construction and analysis of finite element
 models of OH5, Sts 5, MH1 and the chimpanzees are provided elsewhere
 (Smith et al., 2015a,b; Ledogar et al., 2016) and the finite element
 analysis of AL 444-2 followed the same procedures.  Briefly, a watertight,
 tessellated surface model was converted into a mesh of tetrahedral finite
 elements. The model was assigned the material properties of bone and
 loaded with forces simulating the jaw adductor muscles. Nodes at the two
 articular condyles and a bite point on either the
 M<sup>2</sup>or P<sup>3</sup>were constrained from
 moving, producing reaction forces at those nodes. The reaction force at
 the bite point is the bite force.  Maximum principal, minimum principal
 and von Mises strains were recorded at selected nodes throughout the
 model, but are available here at every node in every model.
 Smith AL et al.  2015. Biomechanical implications of
 intraspecific shape variation in chimpanzee crania: moving towards an
 integration of geometric morphometrics and finite element analysis.
 A<em>nat. Rec. </em><strong>298</strong>,
 122-144. Smith AL et al.  2015. The feeding
 biomechanics and dietary ecology of <em>Paranthropus
 boisei</em>. <em>Anat.
 Rec.</em><strong>298</strong>, 145-167. 
 Ledogar JA et al.  2016. Mechanical evidence
 that <em>Australopithecus sediba</em>was limited in its
 ability to eat hard foods. <em>Nat.
 Comm.</em><strong>7</strong>, 10596.
description: Finite element models and results can be opened in Strand7 finite
 element analysis software.
DOI: 10.5061/dryad.n5tb2rbwf
title: Introduced annuals mediate climate-driven community change in Mediterranean prairies of the Pacific Northwest, USA

description: Aim: How climate change will alter plant functional group composition is a
 critical question given the well-recognized effects of plant functional
 groups on ecosystem services. While climate can have direct effects on
 different functional groups, indirect effects mediated through changes in
 biotic interactions have the potential to amplify or counteract direct
 climatic effects. As a result, identifying the underlying causes for
 climate effects on plant communities is important to conservation and
 restoration initiatives. Location: Western Pacific Northwest (Oregon and
 Washington), USA. Methods: Utilizing a three year experiment in three
 prairie sites across a 520 km latitudinal climate gradient, we manipulated
 temperature and precipitation and recorded plant cover each spring. We
 used structural equation models to examine how abiotic drivers (i.e.,
 temperature, moisture, and soil nitrogen) controlled functional group
 cover, and how these groups in turn determined overall plant diversity.
 Results: Warming increased the cover of introduced annual species, causing
 subsequent declines in other functional groups and diversity. While we
 found direct effects of temperature and moisture on extant vegetation
 (i.e., native annuals, native perennials, and introduced perennials),
 these effects were typically amplified by introduced annuals. Competition
 for moisture and light or space, rather than nitrogen, were critical
 mechanisms of community change in this seasonally water-limited
 Mediterranean-climate system. Diversity declines were driven by reductions
 in native annual cover and increasing dominance by introduced annuals.
 Main Conclusions: A shift toward increasing introduced annual dominance in
 this system may be akin to that previously experienced in California
 grasslands, resulting in the “Californication” of Pacific Northwest
 prairies. Such a phenomenon may challenge local land managers in their
 efforts to maintain species-rich and functionally diverse prairie
 ecosystems in the future.
description: The ReadMe file describes each data file and provides
 descriptions of column headers for the processed files. See methods
 section in manuscript for complete details regarding the
 data.
DOI: 10.57841/casdc.0007113
title: 羧基化与季铵盐细菌纤维素共同构筑仿墨鱼骨结构材料
DOI: 10.6078/d1zm6f
title: Risk factors for third-generation cephalosporin-resistant and extended-spectrum β-lactamase-producing Escherichia coli carriage in domestic animals of semirural parishes east of Quito, Ecuador

description: Extended-spectrum β-lactamase (ESBL)-producing and other antimicrobial
 resistant (AR) Escherichia coli threaten human and
 animal health worldwide. This study examined risk factors for domestic
 animal colonization with ceftriaxone-resistant (CR) and
 ESBL-producing E. coli in semirural parishes
 east of Quito, Ecuador, where small-scale food animal production is
 common. Survey data regarding household characteristics, animal care, and
 antimicrobial use were collected from 304 households over three sampling
 cycles, and 1195 environmental animal fecal samples were assessed
 for E. coli presence and antimicrobial
 susceptibility. Multivariable regression analyses were used to assess
 potential risk factors for CR and
 ESBL-producing E. coli carriage. Overall, CR
 and ESBL-producing E. coli were detected in 56%
 and 10% of all fecal samples, respectively. The odds of
 CR E. coli carriage were greater among dogs at
 households that lived within a 5 km radius of more than 5 commercial food
 animal facilities (OR 1.72, 95% CI 1.15–2.58) and lower among dogs living
 at households that used antimicrobials for their animal(s) based on
 veterinary/pharmacy recommendation (OR 0.18, 95% CI 0.04–0.96). Increased
 odds of canine ESBL-producing E. coli carriage
 were associated with recent antimicrobial use in any household animal (OR
 2.69, 95% CI 1.02–7.10) and purchase of antimicrobials from pet food
 stores (OR 6.83, 95% CI 1.32–35.35). Food animals at households that owned
 more than 3 species (OR 0.64, 95% CI 0.42–0.97), that used antimicrobials
 for growth promotion (OR 0.41, 95% CI 0.19–0.89), and that obtained
 antimicrobials from pet food stores (OR 0.47, 95% CI 0.25–0.89) had
 decreased odds of CR E. coli carriage, while
 food animals at households with more than 5 people (OR 2.22, 95% CI
 1.23–3.99) and located within 1 km of a commercial food animal facility
 (OR 2.57, 95% CI 1.08–6.12) had increased odds of
 ESBL-producing E. coli carriage. Together,
 these results highlight the complexity of antimicrobial resistance among
 domestic animals in this setting.
description: Please see: MITMAN_PRISA_AMRinAnimalsEcuador_READme
description: Please see: MITMAN_PRISA_AMRinAnimalsEcuador_READme
DOI: 10.15468/dl.e2ab4j
title: Occurrence Download

description: A dataset containing 20128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Claviceps africana, Byssochlamys nivea, Claviceps fusiformis, Claviceps purpurea)"
 ]
}

 The dataset includes 20128 records from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002919-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.rr4xgxd8v
title: Shell colour diversification induced by ecological release: a shift in natural selection after a migration event

description: Ecological release is often attributed to the rapid adaptive
 diversification of phenotypic traits. However, it is not well understood
 how natural selection changes its strength and direction through the
 process of ecological release. Herein, we demonstrated how shell colour of
 the Japanese land snail Euhadra peliomphala simodae has diversified via a
 shift in natural selection due to ecological release after migration from
 the mainland to an island. This snail’s shell colour diversified on the
 island due to disruptive selection after migration from the mainland. We
 used trail-camera traps to identify the cause of natural selection on both
 the mainland and island. We then conducted a mark-recapture experiment
 while collecting microhabitat use data. In total, we captured and marked
 around 1700 snails on the mainland, some of which were preyed upon by an
 unknown predator. The trail-camera traps showed that the predator is the
 large Japanese field mouse Apodemus speciosus, and the predatory frequency
 was higher on the mainland than on the island. However, this predation did
 not correlate with shell colour. Microhabitat use on the island was more
 extensive than on the mainland, with snails on the island using both
 ground and arboreal microhabitats. A Bayesian estimation showed that the
 stabilising selection on shell colour came from factors other than
 predation. Our results suggest that the course of natural selection was
 modified due to ecological release after migration from the mainland,
 explaining one cause of the phenotypic diversification.