cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3674815_d3.v1
title: Additional file 1: of Resolved phylogeny and biogeography of the root pathogen Armillaria and its gasteroid relative, Guyanagaster

description: Collection data for the specimens used in the phylogenetic analyses and GenBank accession numbers for the corresponding sequence data, both generated for this study and obtained from previous studies [10, 64, 83, 99–114]. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3674815_d3
title: Additional file 1: of Resolved phylogeny and biogeography of the root pathogen Armillaria and its gasteroid relative, Guyanagaster

description: Collection data for the specimens used ﻿in the phylogenetic analyses and GenBank accession numbers for the corresponding sequence data, both generated for this study and obtained from previous studies [10, 64, 83, 99–114]﻿. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3674827_d1.v1
title: Additional file 1: of Breed and adaptive response modulate bovine peripheral blood cells’ transcriptome

description: Characteristics of animals chosen for the transcriptome analysis in the selected commercial farms. F: farm, IH: Italian Holstein, IS: Italian Simmental, DIM: days in milk, BCS: body condition score, SCC: somatic cell count, values are expressed as mean ± SD. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3674818_d2.v1
title: Additional file 1: of Abundance, zoonotic potential and risk factors of intestinal parasitism amongst dog and cat populations: The scenario of Crete, Greece

description: Examples of alignments analyzed (different target genes) in both dogs and cats. (ZIP 3Â kb)
DOI: 10.6084/m9.figshare.c.3674818_d2
title: Additional file 1: of Abundance, zoonotic potential and risk factors of intestinal parasitism amongst dog and cat populations: The scenario of Crete, Greece

description: Examples of alignments analyzed (different target genes) in both dogs and cats. (ZIP 3Â kb)
DOI: 10.6084/m9.figshare.c.3674827_d1
title: Additional file 1: of Breed and adaptive response modulate bovine peripheral blood cells’ transcriptome

description: Characteristics of animals chosen for the transcriptome analysis in the selected commercial farms. F: farm, IH: Italian Holstein, IS: Italian Simmental, DIM: days in milk, BCS: body condition score, SCC: somatic cell count, values are expressed as mean ± SD. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3674821_d3.v1
title: Additional file 6: of Exact p-values for pairwise comparison of Friedman rank sums, with application to comparing classifiers

description: Computation of p-values presented in TableÂ 6. A.zip file providing the R code to reproduce the exact p-values presented in TableÂ 6. (ZIP 1 kb)
DOI: 10.6084/m9.figshare.c.3674866_d1
title: Additional file 5: Dataset S2. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

description: Taxonomy changes in genus level after MTT. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3674863_d2.v1
title: MOESM4 of The fungal composition of natural biofinishes on oil-treated wood

description: Additional file 4: Table S4. Illumina amplicon sequences identified by a BLAST search against the database of GenBank, Q-bank and CBS (type strains of the CBS Barcoding database were selected from data generated until September 2015). Sequences were identified to genus level when possible and marked as â  unidentified genusâ   when BLAST resulted in hits with an identity below 97%. The number of reads of each unique sequence is listed for each sample.
DOI: 10.6084/m9.figshare.c.3674863_d2
title: MOESM4 of The fungal composition of natural biofinishes on oil-treated wood

description: Additional file 4: Table S4. Illumina amplicon sequences identified by a BLAST search against the database of GenBank, Q-bank and CBS (type strains of the CBS Barcoding database were selected from data generated until September 2015). Sequences were identified to genus level when possible and marked as â  unidentified genusâ   when BLAST resulted in hits with an identity below 97%. The number of reads of each unique sequence is listed for each sample.
DOI: 10.6084/m9.figshare.c.3674866_d2.v1
title: Additional file 2: Dataset S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

description: A summary on participantsâ   characteristics and their medical and diet history. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3674866_d2
title: Additional file 2: Dataset S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

description: A summary on participantsâ   characteristics and their medical and diet history. (XLSX 53 kb)
DOI: 10.15468/dl.9h273c
title: Occurrence Download

description: A dataset containing 14503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Belone belone (Linnaeus, 1760)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 14503 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038292-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3675745_d2.v1
title: Additional file 2: of I-Gel is a suitable alternative to endotracheal tubes in the laparoscopic pneumoperitoneum and trendelenburg position

description: â  Respiratory parametersâ   This file contains raw data about the respiratory parameters, including leak fraction, leak volume, etc. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3675745_d2
title: Additional file 2: of I-Gel is a suitable alternative to endotracheal tubes in the laparoscopic pneumoperitoneum and trendelenburg position

description: â  Respiratory parametersâ   This file contains raw data about the respiratory parameters, including leak fraction, leak volume, etc. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3675769_d1
title: Additional file 1: of Transfer of skills and comparison of performance between king visionÂŽ video laryngoscope and macintosh blade following an AHA airway management course

description: Raw study data. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3675769_d1.v1
title: Additional file 1: of Transfer of skills and comparison of performance between king visionÂŽ video laryngoscope and macintosh blade following an AHA airway management course

description: Raw study data. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3675778_d1.v1
title: Additional file 4: Table S3. of Molecular dissection of germline chromothripsis in a developmental context using patient-derived iPS cells

description: Associations of genes located near the breakpoints with human and mouse disease phenotypes. Associations of the genes with human disease phenotypes were obtained from the MalaCards human disease database ( http://www.malacards.org/ ; only phenotypes with a score of more than 1 are included). Mouse embryonic expression data were retrieved from the Gene Expression Database (GXD) from Mouse Genome Informatics ( http://www.informatics.jax.org/expression.shtml ) and the eMouseAtlas ( http://www.emouseatlas.org/ ). Phenotypes of homozygous mouse knockouts were obtained from Mouse Genome Informatics ( http://www.informatics.jax.org/ ). Data were not available for all genes. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3675778_d1
title: Additional file 4: Table S3. of Molecular dissection of germline chromothripsis in a developmental context using patient-derived iPS cells

description: Associations of genes located near the breakpoints with human and mouse disease phenotypes. Associations of the genes with human disease phenotypes were obtained from the MalaCards human disease database ( http://www.malacards.org/ ; only phenotypes with a score of more than 1 are included). Mouse embryonic expression data were retrieved from the Gene Expression Database (GXD) from Mouse Genome Informatics ( http://www.informatics.jax.org/expression.shtml ) and the eMouseAtlas ( http://www.emouseatlas.org/ ). Phenotypes of homozygous mouse knockouts were obtained from Mouse Genome Informatics ( http://www.informatics.jax.org/ ). Data were not available for all genes. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3675754_d2.v1
title: MOESM3 of Genome-wide methylation data mirror ancestry information

description: Additional file 3. The reference list of informative CpGs.
DOI: 10.6084/m9.figshare.c.3675754_d2
title: MOESM3 of Genome-wide methylation data mirror ancestry information

description: Additional file 3. The reference list of informative CpGs.
DOI: 10.6084/m9.figshare.c.3675841_d1
title: Additional file 5: Table S9. of Epigenome-wide association study of DNA methylation in panic disorder

description: Probe IDs of possible cross-reactive probes. (XLSX 446Â kb)
DOI: 10.6084/m9.figshare.c.3675850_d2
title: Additional file 2: of Habitat structure is linked to the evolution of plumage colour in female, but not male, fairy-wrens

description: Dataset contrast: Raw values of three environmental layers for each subspecies, the principal component used in the analysis (pc1_veg) and values of contrast against green background (cont.g) and brown background (cont.b). Page one contains values for females and page two contains values for males. (XLS 106Â kb)
DOI: 10.15468/dl.7wgey4
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bembrops anatirostris Ginsburg, 1955",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 113 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038293-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3676519_d2.v1
title: Additional file 3: of Validation of the French versions of the Hirschsprung’s disease and Anorectal malformations Quality of Life (HAQL) questionnaires for adolescents and adults

description: The data in the files “data of adolescents” and “data of adults”. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3676519_d2
title: Additional file 3: of Validation of the French versions of the Hirschsprung’s disease and Anorectal malformations Quality of Life (HAQL) questionnaires for adolescents and adults

description: The data in the files “data of adolescents” and “data of adults”. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3676516_d2.v1
title: Additional file 4: Table S3. of Diversity and enterotype in gut bacterial community of adults in Taiwan

description: List of selected twelve features. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3676516_d2
title: Additional file 4: Table S3. of Diversity and enterotype in gut bacterial community of adults in Taiwan

description: List of selected twelve features. (XLSX 12Â kb)
DOI: 10.15468/dl.rfxhpe
title: Occurrence Download

description: A dataset containing 11022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "SpeciesKey is one of (Polistes humilis (Fabricius, 1781), Polistes chinensis (Fabricius, 1793), Vespula germanica (Fabricius, 1793), Vespula vulgaris (Linnaeus, 1758), Doleromyrma darwiniana (Forel, 1907), Linepithema humile (Mayr, 1868), Pheidole megacephala (Fabricius, 1793), Epiphyas postvittana (Walker, 1863), Cydia pomonella (Linnaeus, 1758), Herpetogramma licarsisalis (Walker, 1859), Pieris brassicae (Linnaeus, 1758), Latrodectus hasselti Thorell, 1870, Latrodectus mactans (Fabricius, 1775), Lampona cylindrata (L.Koch, 1866), Lampona murina L.Koch, 1873, Haemaphysalis longicornis Neumann, 1901, Varroa destructor Anderson & Trueman, 2000, Coptotermes acinaciformis (Froggatt, 1898), Coscinoptycha improbana Meyrick, 1881, Spodoptera litura (Fabricius, 1775))"
 ]
}

 The dataset includes 11022 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038295-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3676576_d1
title: Additional file 1: Table S1. of DeSigN: connecting gene expression with therapeutics for drug repurposing and development

description: List of sensitive and resistant cell lines for each of the 140 drugs in DeSigN. (XLS 88Â kb)
DOI: 10.6084/m9.figshare.c.3676579_d1
title: Additional file 5 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

description: Additional Excel Table S3b. Additional Excel Table S3b with output of significant results of the EWAS meta-analyses of smoking: effect sizes, standard error, P values, test statistics of all cohorts, and the meta-analysis results. (133 KB XLSX)
DOI: 10.6084/m9.figshare.c.3676576_d3.v1
title: Additional file 9: Table S9. of DeSigN: connecting gene expression with therapeutics for drug repurposing and development

description: Mean apoptotic cells relative to control (%). (XLS 40Â kb)
DOI: 10.6084/m9.figshare.c.3676576_d3
title: Additional file 9: Table S9. of DeSigN: connecting gene expression with therapeutics for drug repurposing and development

description: Mean apoptotic cells relative to control (%). (XLS 40Â kb)
DOI: 10.6084/m9.figshare.c.3676576_d4.v1
title: Additional file 2: Table S2. of DeSigN: connecting gene expression with therapeutics for drug repurposing and development

description: Differentially expressed genes from ER-positive breast cancer versus normal (GSE42568). (XLS 204Â kb)
DOI: 10.6084/m9.figshare.c.3676579_d4.v1
title: Additional file 3 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

description: Additional simulations. R code and documentation of all simulations described in the manuscript and some additional simulations. (923 KB HTML)
DOI: 10.15468/dl.hvqnjf
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Benthalbella dentata (Chapman, 1939)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038296-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3677731_d1
title: Additional file 1: of Computer-based comparison of different methods for selecting mitral annuloplasty ring size

description: Measurements of mitral annulus dimensions extracted from Mitralyzer software. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.c.3677740_d1.v1
title: Additional file 2: of Estimation of genetic diversity in Gute sheep: pedigree and microsatellite analyses of an ancient Swedish breed

description: Contains the microsatellite genotypes for the 94 gute sheep. (TXT 22Â kb)
DOI: 10.6084/m9.figshare.c.3677740_d1
title: Additional file 2: of Estimation of genetic diversity in Gute sheep: pedigree and microsatellite analyses of an ancient Swedish breed

description: Contains the microsatellite genotypes for the 94 gute sheep. (TXT 22Â kb)
DOI: 10.6084/m9.figshare.c.3677740_d2.v1
title: Additional file 3: of Estimation of genetic diversity in Gute sheep: pedigree and microsatellite analyses of an ancient Swedish breed

description: Contains the year of birth and horn and tail phenotypes for the 94 gute sheep with microsatellite genotypes. (TXT 2Â kb)
DOI: 10.6084/m9.figshare.c.3677740_d2
title: Additional file 3: of Estimation of genetic diversity in Gute sheep: pedigree and microsatellite analyses of an ancient Swedish breed

description: Contains the year of birth and horn and tail phenotypes for the 94 gute sheep with microsatellite genotypes. (TXT 2Â kb)
DOI: 10.6084/m9.figshare.c.3677737_d2.v1
title: Additional file 2: of Mitochondrial mutations and metabolic adaptation in pancreatic cancer

description: Table S4: Metabolomics data. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.c.3677746_d1.v1
title: Additional file 2: Table S1. of Serum microRNA miR-501-3p as a potential biomarker related to the progression of Alzheimerâ  s disease

description: Top 20 deregulated serum miRNAs that were identified by NGS in the ROW discovery set after adjusting for age, sex, APOE genotype, and hemolysis ratio. Table S2. Significantly deregulated miRNAs that were identified by NGS in the temporal cortex of the ROW discovery set. Table S3. Significantly deregulated miRNAs that were identified by NGS in the temporal cortex of the ROW discovery set after adjusting for age, sex, APOE genotype, and RIN. Table S4. Significantly differentially expressed genes that were identified by NGS in hsa-miR-501-3p overexpression in cultured cells. Table S5. Gene Ontology enrichment analysis on the significantly downregulated genes in hsa-miR-501-3p overexpression in cultured cells. Table S6. Gene Ontology enrichment analysis on the significantly upregulated genes in hsa-miR-501-3p overexpression in cultured cells. (XLS 172 kb)
DOI: 10.6084/m9.figshare.c.3677746_d1
title: Additional file 2: Table S1. of Serum microRNA miR-501-3p as a potential biomarker related to the progression of Alzheimerâ  s disease

description: Top 20 deregulated serum miRNAs that were identified by NGS in the ROW discovery set after adjusting for age, sex, APOE genotype, and hemolysis ratio. Table S2. Significantly deregulated miRNAs that were identified by NGS in the temporal cortex of the ROW discovery set. Table S3. Significantly deregulated miRNAs that were identified by NGS in the temporal cortex of the ROW discovery set after adjusting for age, sex, APOE genotype, and RIN. Table S4. Significantly differentially expressed genes that were identified by NGS in hsa-miR-501-3p overexpression in cultured cells. Table S5. Gene Ontology enrichment analysis on the significantly downregulated genes in hsa-miR-501-3p overexpression in cultured cells. Table S6. Gene Ontology enrichment analysis on the significantly upregulated genes in hsa-miR-501-3p overexpression in cultured cells. (XLS 172 kb)
DOI: 10.6084/m9.figshare.c.3677737_d2
title: Additional file 2: of Mitochondrial mutations and metabolic adaptation in pancreatic cancer

description: Table S4: Metabolomics data. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.c.3677749_d1.v1
title: Additional file 14: Table S13. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Gene set enrichment analysis of gene expression data 7Â days after MenACWY-CRM compared with MenACWY-PS vaccine in the Li et al. dataset. (XLS 12 kb)
DOI: 10.6084/m9.figshare.c.3677749_d1
title: Additional file 14: Table S13. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Gene set enrichment analysis of gene expression data 7Â days after MenACWY-CRM compared with MenACWY-PS vaccine in the Li et al. dataset. (XLS 12 kb)
DOI: 10.6084/m9.figshare.c.3677749_d11.v1
title: Additional file 10: Table S9. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Gene set enrichment analysis of gene expression data 7Â days after booster dose of MenACWY. (XLS 118 kb)
DOI: 10.6084/m9.figshare.c.3677749_d11
title: Additional file 10: Table S9. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Gene set enrichment analysis of gene expression data 7Â days after booster dose of MenACWY. (XLS 118 kb)
DOI: 10.6084/m9.figshare.c.3677791_d4.v1
title: Additional file 6: Table S3. of Epithelial response to a high-protein diet in rat colon

description: List of Ingenuity Pathway Analysis software canonical pathways significantly enriched (p
DOI: 10.6084/m9.figshare.c.3677749_d12.v1
title: Additional file 8: Table S7. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Pathway analysis for the transcripts at day 7 post-vaccination that were selected as predictor variables of day 28 MenC-specific SBA by the LASSO model. (XLS 35 kb)
DOI: 10.6084/m9.figshare.c.3677791_d4
title: Additional file 6: Table S3. of Epithelial response to a high-protein diet in rat colon

description: List of Ingenuity Pathway Analysis software canonical pathways significantly enriched (p
DOI: 10.6084/m9.figshare.c.3677749_d12
title: Additional file 8: Table S7. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Pathway analysis for the transcripts at day 7 post-vaccination that were selected as predictor variables of day 28 MenC-specific SBA by the LASSO model. (XLS 35 kb)
DOI: 10.6084/m9.figshare.c.3677791_d5.v1
title: Additional file 3: Table S1. of Epithelial response to a high-protein diet in rat colon

description: List of genes differentially expressed in colonocytes of rats fed a high-protein diet compared to rats fed a normal protein diet (q
DOI: 10.6084/m9.figshare.c.3677791_d5
title: Additional file 3: Table S1. of Epithelial response to a high-protein diet in rat colon

description: List of genes differentially expressed in colonocytes of rats fed a high-protein diet compared to rats fed a normal protein diet (q
DOI: 10.6084/m9.figshare.c.3677749_d13.v1
title: Additional file 5: Table S4. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Comparison of transcript fold changes 7Â days after vaccination with MenACWY-CRM or MenACWY-PS. (XLS 2331 kb)
DOI: 10.6084/m9.figshare.c.3677749_d13
title: Additional file 5: Table S4. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Comparison of transcript fold changes 7Â days after vaccination with MenACWY-CRM or MenACWY-PS. (XLS 2331 kb)
DOI: 10.6084/m9.figshare.c.3677749_d14.v1
title: Additional file 13: Table S12. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Genes differentially expressed 7Â days after conjugate vaccine compared with polysaccharide vaccine in the Li et al. dataset. (XLS 5370 kb)
DOI: 10.6084/m9.figshare.c.3677749_d14
title: Additional file 13: Table S12. of High-dimensional assessment of B-cell responses to quadrivalent meningococcal conjugate and plain polysaccharide vaccine

description: Genes differentially expressed 7Â days after conjugate vaccine compared with polysaccharide vaccine in the Li et al. dataset. (XLS 5370 kb)
DOI: 10.15468/dl.xad5m4
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Benthodesmus elongatus (Clarke, 1879)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 271 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038297-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.