cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/0pz1s-zwj16
title: Proteus

description: Planktonic cell, PG layer, Proteus mirabillis .  [added 2018-08-03 20:59:25] Proteus cell
description: <strong>Tilt Series Date:</strong> 2015-12-07</p>
<strong>Data Taken By:</strong> Qing Yao</p>
<strong>Species / Specimen:</strong> Proteus mirabilis</p>
<strong>Strain:</strong> HI4320</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33599x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Douglas B. Weibel lab, Wisconsin-Madison university. Preparethe cell and design the research.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> This sample is prepared with the help of George Aucer, Ph. D student at Douglas B. Weibel lab, Wisconsin-Madison university</p>
<strong>Sample Preparation:</strong> OD=6, 4 ul loading. bloting condition 6s force/ 3s time/ 1s dry time, QUANTIFOIL® – Holey Carbon Films 200 mesh</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2015-12-07-12/3dimage_71242/</p>atlas10012_part121_14.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2015-12-07-12/3dimage_71242/atlas10012_part121_14.rec"
        > <i class="download icon"></i> Download </a></p>

        atlas10012.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2015-12-07-12/rawdata/atlas10012.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/35jm1-axw60
title: Staphylococcus aureus_WT

description: T7SS
description: <strong>Tilt Series Date:</strong> 2017-06-28</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 280.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Tracy Palmer, University of Dundee. Data collected and processed by Ki Woo and Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> Media: TSA 500g (Oxoid TSA and TSB from Thermo Fisher. 10525943), TBS 500g (10137562)Dilute an overnight culture 1/100Incubate it for 4 hr (--> OD 2)Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-06-28-19/3dimage_85393/</p>Sau_WT0018_part67_3.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-06-28-19/3dimage_85393/Sau_WT0018_part67_3.rec"
        > <i class="download icon"></i> Download </a></p>

        Sau_WT0018.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-06-28-19/rawdata/Sau_WT0018.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/w4mcb-teq58
title: wt_perfusion_fixed_immunofluoro

description: This sample is wt cells grown in perfusion set-up. It was imaged on LM for wires, fixed with 4 % formaldehyde for 1 hour, immunofluorescence was done for cytochromes, reimaged, fixed with 2.5% glutaraldehyde for 15 minutes, triple washed with distilled water and saved in distilled water until freezing. The grid was prepared by Sahand on 10/22/15. The grid was frozen on 10/23/15 at Caltech using vitrobot MK4.
description: <strong>Tilt Series Date:</strong> 2015-10-27</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -5.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand USC</p>
<strong>Sample Preparation:</strong> The sample was frozen using vitrobot. C side left. 1.8 ul gold 10nm size was added on opposite side while on vitrobot. conditions: blot force=6, blot time=2.5s, drain time =1s, wait time=0. humidity set 80%. temp 22C. Use 2.5ul gold next time</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-10-27-9/3dimage_70624/</p>manual4_sq10-1_part121_8.rec,  Reconstruction (Pixel Size 1.28 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-10-27-9/3dimage_70624/manual4_sq10-1_part121_8.rec"
        > <i class="download icon"></i> Download </a></p>

        manual4_sq10-1.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-10-27-9/rawdata/manual4_sq10-1.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.z9k4h4
title: Occurrence Download

description: A dataset containing 49849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Observation.org, Nature data from around the World",
 "Geometry POLYGON((-4.03215 42.70748,-3.25585 42.70012,-3.2301 43.45802,-4.0064 43.45434,-4.02479 43.10851,-4.03215 42.70748))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 49849 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025347-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cypbbt
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bauhinia chapulhuacania Wunderlin"
 ]
}

 The dataset includes 66 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019343-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34804/supra.20240816573
title: Cyclodextrin Complex Formation with Water-Soluble Drugs: Conclusions from Isothermal Titration Calorimetry and Molecular Modeling

description: AbstractCyclodextrin (CD) complexes are frequently used for enhancing the solubility or absorption of poorly water-soluble drugs. On the contrary, little is known about their complex formation with water-soluble drugs. Here, we have studied the interaction between 2-hydroxypropyl β-CD (HPβCD) and three water-soluble drugs, namely naloxone (NX), oxycodone (OC), and tramadol (TR), by isothermal titration calorimetry (ITC) combined with molecular modeling in view of the potential impact on drug release. The results showed that the complex formation of HPβCD with all three drugs occurs spontaneously. The complexes formed with NX and OC were found to be 2NX:1HPβCD and 3OC:2HPβCD, respectively. TR was found to form 2 complexes with HPβCD; of 1:2 and 1:1 complexation ratios. The binding of HPβCD to NX was greater than to OC due to the higher hydrophobicity of the structure of the former. Moreover, the binding affinity of HPβCD to TR was higher than to OC, which indicated the effect of the higher flexibility of the guest in increasing the binding affinity.In vitrodrug release experiments from the various complexes revealed a significant impact of the stoichiometry of the complex on the release profiles. Accordingly, the co-administration of cyclodextrins with water-soluble drugs should be closely monitored, as it may result in unintentional complex formation that can potentially impact the drugs’ gastrointestinal absorption.
DOI: 10.5281/zenodo.15589205
title: FIShBOT Archive 2025-06-04

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.15589206
title: FIShBOT Archive 2025-06-04

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.15399066
title: Bio-Hybrid Cognitive Architecture and Framework

description: This repository presents the results of our research on autonomous navigation for cyborg insects in complex environments. Our approach incorporates two key innovations:Uniform Noise Stimulation: This technique counteracts habituation to continuous stimulation, ensuring consistent responsiveness in the insects.Bioactivity Parameter: This parameter allows for dynamic exploration of navigation performance in challenging scenarios.We conducted experiments in two distinct environments:Flat Surfaces with High-Density Obstacles: Data, Videos, and code for this scenario are located in the "BioactivityParameterFlatComplex" folder.Real Environments with Sandy Surfaces, Holes, and Rocks: Data, Videos,  and code for this scenario are found in the "SandySurfaceComplexEnvironment" folder.

This repository includes experimental data, code, and accompanying videos to support our findings
DOI: 10.15468/dl.7yeu92
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019344-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29082131
title: 第一组补录

description: Improve mental healthy
DOI: 10.6084/m9.figshare.29082131.v1
title: 第一组补录

description: Improve mental healthy
DOI: 10.15468/dl.846fb7
title: Occurrence Download

description: A dataset containing 806090 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Branta hutchinsii (Richardson, 1832))",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 806090 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019326-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5a83j
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "OccurrenceStatus is Present",
 "TaxonKey is Batillaria W.H.Benson, 1842"
 ]
}

 The dataset includes 42 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019345-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukznb8
title: Occurrence Download

description: A dataset containing 69082342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "License is CC-BY 4.0",
 "Year 1000-2017"
 ]
}

 The dataset includes 69082342 records from 1377 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019325-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15590613
title: Automated Workflow for High-Throughput LC–MS/MS-Based Therapeutic Monitoring of Cannabidiol and 7-Hydroxy-cannabidiol in Patients with Epilepsy

description: Introduction

This database includes the raw data linked with the paper “Automated Workflow for High-Throughput LC–MS/MS-Based Therapeutic Monitoring of Cannabidiol and 7-Hydroxy-cannabidiol in Patients with Epilepsy ”.   

This study presents the development and validation of a fully automated workflow for preparing serum samples to quantify cannabidiol (CBD) and its active metabolite, 7-hydroxy-CBD, using liquid chromatography coupled with tandem mass spectrometry (LC–MS/MS). The workflow, implemented on an automated platform, performs critical steps—including solvent dispensing, mixing, centrifugation, filtration, and supernatant transfer—resulting in 96-well plates ready for analysis. Human serum samples were collected from epilepsy patients undergoing CBD therapy and were processed using both manual and automated methods to assess agreement. Quantification was carried out via LC–MS/MS with cannabidiol-d₃ as the internal standard. Method validation, performed according to  European Medicines Agency  guidelines, confirmed that the automated protocol met the recommended criteria for both intraday and interday accuracy and precision. Calibration curves exhibited excellent linearity across the tested concentration ranges. Comparative analysis using Passing–Bablok regression and Bland–Altman plots revealed strong agreement between manual and automated approaches. These results support the clinical utility of the automated method for therapeutic drug monitoring (TDM) of CBD and 7-hydroxy-CBD.  Its robust performance and scalability also provide a strong foundation for expanding the analytical panel to include a broader spectrum of antiseizure medications, promoting more standardized and effective TDM practices in clinical settings.
DOI: 10.5281/zenodo.15590614
title: Automated Workflow for High-Throughput LC–MS/MS-Based Therapeutic Monitoring of Cannabidiol and 7-Hydroxy-cannabidiol in Patients with Epilepsy

description: Introduction

This database includes the raw data linked with the paper “Automated Workflow for High-Throughput LC–MS/MS-Based Therapeutic Monitoring of Cannabidiol and 7-Hydroxy-cannabidiol in Patients with Epilepsy ”.   

This study presents the development and validation of a fully automated workflow for preparing serum samples to quantify cannabidiol (CBD) and its active metabolite, 7-hydroxy-CBD, using liquid chromatography coupled with tandem mass spectrometry (LC–MS/MS). The workflow, implemented on an automated platform, performs critical steps—including solvent dispensing, mixing, centrifugation, filtration, and supernatant transfer—resulting in 96-well plates ready for analysis. Human serum samples were collected from epilepsy patients undergoing CBD therapy and were processed using both manual and automated methods to assess agreement. Quantification was carried out via LC–MS/MS with cannabidiol-d₃ as the internal standard. Method validation, performed according to  European Medicines Agency  guidelines, confirmed that the automated protocol met the recommended criteria for both intraday and interday accuracy and precision. Calibration curves exhibited excellent linearity across the tested concentration ranges. Comparative analysis using Passing–Bablok regression and Bland–Altman plots revealed strong agreement between manual and automated approaches. These results support the clinical utility of the automated method for therapeutic drug monitoring (TDM) of CBD and 7-hydroxy-CBD.  Its robust performance and scalability also provide a strong foundation for expanding the analytical panel to include a broader spectrum of antiseizure medications, promoting more standardized and effective TDM practices in clinical settings.
DOI: 10.15468/dl.x7baag
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Remingtonocetus Kumar & Sahni, 1986"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019642-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15301163
title: Inflow to a Waste Water Treatment Plant: observations and processed data

description: This repository provides access to measurements of the combined sewage inflow to a Waste Water Treatment Plant (WWTP) located in Denmark. The data is accompanied by measurements of relevant metereological variables captured by a weather station near the WWTP and provided by the Danish Metereological Institute (DMI).

 

The dataset contains approximately 15 months of hourly observations. The exact location of the WWTP and weather station are omitted.

Files



README contains a description of the dataset. 

observations contains all the measurements, split in two files respectively for the flow and metereological data.

processed contains the matched data with minimal preprocessing as described here.
DOI: 10.5281/zenodo.15301164
title: Inflow to a Waste Water Treatment Plant: observations and processed data

description: This repository provides access to measurements of the combined sewage inflow to a Waste Water Treatment Plant (WWTP) located in Denmark. The data is accompanied by measurements of relevant metereological variables captured by a weather station near the WWTP and provided by the Danish Metereological Institute (DMI).

 

The dataset contains approximately 15 months of hourly observations. The exact location of the WWTP and weather station are omitted.

Files



README contains a description of the dataset. 

observations contains all the measurements, split in two files respectively for the flow and metereological data.

processed contains the matched data with minimal preprocessing as described here.
DOI: 10.15468/dl.4j6x9k
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrewsiphius Sahni & Mishra, 1975"
 ]
}

 The dataset includes 25 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019644-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fe72m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rayanistes Bebej et al., 2015"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019648-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjjjnh
title: Occurrence Download

description: A dataset containing 35082 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia heterophylla L."
 ]
}

 The dataset includes 35082 records from 718 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019643-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fdgegm
title: Occurrence Download

description: A dataset containing 66464153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "License is CC-BY 4.0",
 "Year 2019-2020"
 ]
}

 The dataset includes 66464153 records from 9021 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019629-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29244878
title: figure and tables

description: figure and tables
DOI: 10.6084/m9.figshare.29244878.v1
title: figure and tables

description: figure and tables
DOI: 10.15468/dl.6yzcwf
title: Occurrence Download

description: A dataset containing 646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Nepal, Bhutan, Bangladesh, Pakistan, China, India, Myanmar, Afghanistan)",
 "TaxonKey is Badamia exclamationis (Fabricius, 1775)"
 ]
}

 The dataset includes 646 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022157-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q24f5b
title: Occurrence Download

description: A dataset containing 1148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia guaranitica A.St.-Hil. ex Benth."
 ]
}

 The dataset includes 1148 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022155-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9p8pc3
title: Occurrence Download

description: A dataset containing 1797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Country is Austria",
 "DatasetKey is NABU|naturgucker",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Squamata, Testudines, Amphibia)"
 ]
}

 The dataset includes 1797 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022249-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65smw7
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Widdringtonia whytei Rendle"
 ]
}

 The dataset includes 60 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022251-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.