cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3867871_d2.v1
title: Additional file 2: of Ribosome signatures aid bacterial translation initiation site identification

description: Tables S1–S18. Table S1. Variable importance in the S. Typhimurium monosome sample. Table S2. Variable importance in the S. Typhimurium polysome sample. Table S3. N-terminal support for S. Typhimurium predicted ORFs. Table S4. Predicted ORFs from the S. Typhimurium dataset. Table S5. Assessment of the contribution of parameter types to the predictive performance. Table S6. Support for novel predicted ORFs. Table S7. Ribo-seq sample info. Table S8. Variable importance in the E. coli TET2 sample. Table S9. Variable importance in the E. coli TET3 sample. Table S10. Variable importance in the E. coli Li1 sample. Table S11. Variable importance in the E. coli Li3 sample. Table S12: Variable importance in the E. coli Mohammad1 sample. Table S13. Variable importance in the E. coli Mohammad2 sample. Table S14. ORF predictions in the E. coli tetracycline libraries. Table S15. ORF predictions in the E. coli Li libraries. Table S16. ORF predictions in the E. coli Mohammad libraries. Table S17. Blocked N-terminal peptides. Table S18. High confidence N-terminal peptides. (XLSX 321 kb)
DOI: 10.6084/m9.figshare.c.3867868_d4
title: Additional file 2: Table S1. of The transcription factor Maf-S regulates metabolic resistance to insecticides in the malaria vector Anopheles gambiae

description: Information on microarray data sets from insecticide resistant populations. Population name represents the area from which the strain was sampled in addition to insecticide exposure, where relevant. Country of origin, species, susceptible reference strain and paper reference are also given. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3867868_d6.v1
title: Additional file 4: Table S2. of The transcription factor Maf-S regulates metabolic resistance to insecticides in the malaria vector Anopheles gambiae

description: Co-correlated transcripts for each of cnc, Maf-S and Keap1. Gene ID and associated description for all co-correlated transcripts (Âą0.8) for each gene in the Maf-S-cnc-Keap1 pathway. Correlation was computed via a correlation matrix in R using the microarray datasets in Additional file 2: Table S1. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3867871_d2
title: Additional file 2: of Ribosome signatures aid bacterial translation initiation site identification

description: Tables S1–S18. Table S1. Variable importance in the S. Typhimurium monosome sample. Table S2. Variable importance in the S. Typhimurium polysome sample. Table S3. N-terminal support for S. Typhimurium predicted ORFs. Table S4. Predicted ORFs from the S. Typhimurium dataset. Table S5. Assessment of the contribution of parameter types to the predictive performance. Table S6. Support for novel predicted ORFs. Table S7. Ribo-seq sample info. Table S8. Variable importance in the E. coli TET2 sample. Table S9. Variable importance in the E. coli TET3 sample. Table S10. Variable importance in the E. coli Li1 sample. Table S11. Variable importance in the E. coli Li3 sample. Table S12: Variable importance in the E. coli Mohammad1 sample. Table S13. Variable importance in the E. coli Mohammad2 sample. Table S14. ORF predictions in the E. coli tetracycline libraries. Table S15. ORF predictions in the E. coli Li libraries. Table S16. ORF predictions in the E. coli Mohammad libraries. Table S17. Blocked N-terminal peptides. Table S18. High confidence N-terminal peptides. (XLSX 321 kb)
DOI: 10.6084/m9.figshare.c.3867883_d2
title: Additional file 2: of Genome-wide DNA methylation analysis in blood cells from patients with Werner syndrome

description: List of DMPs between WS and CTR. (XLS 531Â kb)
DOI: 10.6084/m9.figshare.c.3867868_d6
title: Additional file 4: Table S2. of The transcription factor Maf-S regulates metabolic resistance to insecticides in the malaria vector Anopheles gambiae

description: Co-correlated transcripts for each of cnc, Maf-S and Keap1. Gene ID and associated description for all co-correlated transcripts (Âą0.8) for each gene in the Maf-S-cnc-Keap1 pathway. Correlation was computed via a correlation matrix in R using the microarray datasets in Additional file 2: Table S1. (XLSX 19Â kb)
DOI: 10.15468/dl.re9j3t
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma annulatum Cope, 1886)"
 ]
}

 The dataset includes 407 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039331-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3867892_d2.v1
title: Additional file 2: of No apparent gain from continuing migration for more than 3000 kilometres: willow warblers breeding in Denmark winter across the entire northern Savannah as revealed by geolocators

description: Data. (XLSX 312 kb)
DOI: 10.6084/m9.figshare.c.3867892_d2
title: Additional file 2: of No apparent gain from continuing migration for more than 3000 kilometres: willow warblers breeding in Denmark winter across the entire northern Savannah as revealed by geolocators

description: Data. (XLSX 312 kb)
DOI: 10.15468/dl.hsnet8
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.82959 59.63686,-4.80261 58.69846,-2.48795 58.24398,-2.1567 58.35028,-1.32358 58.93684,-2.06706 59.68486,-3.82959 59.63686))",
 "HasGeospatialIssue is false",
 "TaxonKey is Zostera marina L."
 ]
}

 The dataset includes 149 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039332-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3867904_d1.v1
title: Additional file 1: of Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks

description: Supplementary Tables S1â  S12. (XLSX 427 kb)
DOI: 10.6084/m9.figshare.c.3867904_d1
title: Additional file 1: of Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks

description: Supplementary Tables S1â  S12. (XLSX 427 kb)
DOI: 10.6084/m9.figshare.c.3867901_d2.v1
title: Additional file 11: Table S6. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Genes localized in Plasmid A shared by strains CFBP6988R and CFBP6546R. Please refer to Additional file 10a for graphic representation of the data. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3867901_d3.v1
title: Additional file 12: Table S7. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Average nucleotide identity and percentage of alignment between sequences of plasmid C from 8 X. citri pv. fuscans fuscans and X. phaseoli pv. phaseoli NF1 strains. BLAST calculation of average nucleotide identity (ANIb) and alignment percentages were estimated using Jspecies (Richter and Rossello-Mora, 2009). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3867901_d6.v1
title: Additional file 15: Table S9. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Repeats found within all TAL effectors from X. citri pv. fuscans, X. phaseoli pv. phaseoli, X. citri pv. aurantifolii and X. phaseoli pv. manihotis strains. Sequences were compared after removal of RVD. Xcf = X. citri pv. fuscans; Xpp = X. phaseoli pv. phaseoli; Xca = X. citri pv. aurantifolii; Xpm = X. phaseoli pv. manihotis. A coloured line indicates that the repeat is shared between TAL effectors from different groups, one colour being associated with a single repeat and corresponding to the colour of repeats in Additional file 16: Figure S7. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3867901_d2
title: Additional file 11: Table S6. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Genes localized in Plasmid A shared by strains CFBP6988R and CFBP6546R. Please refer to Additional file 10a for graphic representation of the data. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3867901_d19.v1
title: Additional file 9: Table S5. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Average nucleotide identity and percentage of alignment between sequences of plasmid A from 17 X. citri pv. fuscans and X. phaseoli pv. phaseoli strains. BLAST calculation of average nucleotide identity (ANIb) and alignment percentages were estimated using Jspecies (Richter and Rossello-Mora, 2009). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3867901_d16
title: Additional file 6: Table S4. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Average nucleotide identity and percentage of alignment between whole genome sequences from 17 X. citri pv. fuscans and X. phaseoli pv. phaseoli strains. BLAST calculation of average nucleotide identity (ANIb) and alignment percentages were estimated using Jspecies (Richter and Rossello-Mora, 2009). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3867901_d19
title: Additional file 9: Table S5. of 
                     Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

description: Average nucleotide identity and percentage of alignment between sequences of plasmid A from 17 X. citri pv. fuscans and X. phaseoli pv. phaseoli strains. BLAST calculation of average nucleotide identity (ANIb) and alignment percentages were estimated using Jspecies (Richter and Rossello-Mora, 2009). (XLSX 14 kb)
DOI: 10.15468/dl.fxw3py
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chesnonia verrucosa (Lockington, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039333-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8whe7j
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Portugal",
 "Geometry POLYGON((-18.45037 31.77181,-15.30404 31.77181,-15.30404 33.4435,-18.45037 33.4435,-18.45037 31.77181))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Monachus monachus (Hermann, 1779)"
 ]
}

 The dataset includes 29 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039334-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/1pp0-1c85
title: TESS "Fast" Target Pixel Files: Sector 85

description: All target pixel files for "fast" (20-second cadence) observations from Sector 85.
DOI: 10.17909/z23r-jc93
title: TESS Target Pixel Files: Sector 85

description: All target pixel files for (2-minute cadence) observations from Sector 85.
DOI: 10.17909/w851-5041
title: TESS "Fast" Light Curves: Sector 85

description: All light curve files for "fast" (20-second cadence) observations from Sector 85.
DOI: 10.17909/tz9r-gb60
title: TESS Light Curves: Sector 85

description: All light curve files for (2-minute cadence) observations from Sector 85.
DOI: 10.17909/qtbx-6r60
title: TESS Raw Full Frame Images: Sector 85

description: All raw full frame images from Sector 85.
DOI: 10.17909/xdg9-hb10
title: TESS Calibrated Full Frame Images: Sector 85

description: All calibrated full frame images from Sector 85.
DOI: 10.17909/medt-7k92
title: TESS Data Validation Files: Sector 85

description: All data validation files from Sector 85.
DOI: 10.5281/zenodo.13748171
title: Light Microscopy - Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"

description: Light Microscopy raw data associated with Figures 3 and S3 in Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"
DOI: 10.5281/zenodo.13748172
title: Light Microscopy - Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"

description: Light Microscopy raw data associated with Figures 3 and S3 in Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"
DOI: 10.15468/dl.xeynmk
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiasmodon niger Johnson, 1864",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 164 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039336-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13748422
title: Toxicity test - Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"

description: Toxicity test raw images associated with Figures 3 and S3 in Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"
DOI: 10.5281/zenodo.13748423
title: Toxicity test - Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"

description: Toxicity test raw images associated with Figures 3 and S3 in Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"
DOI: 10.6084/m9.figshare.c.3869137_d2.v1
title: Additional file 2: of Ancient human miRNAs are more likely to have broad functions and disease associations than young miRNAs

description: Human miRNA Ages. The ages of all human miRNAs computed by ProteinHistorian, with timing estimates in millions of years (MY) based on calibrations from TimeTree. (TXT 18Â kb)
DOI: 10.6084/m9.figshare.c.3869131_d3.v1
title: Additional file 3: of Refining the South Asian Origin of the Romani people

description: Estimating the genome-wide proportion of West Eurasian and South Asian ancestry of Roma. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3869137_d2
title: Additional file 2: of Ancient human miRNAs are more likely to have broad functions and disease associations than young miRNAs

description: Human miRNA Ages. The ages of all human miRNAs computed by ProteinHistorian, with timing estimates in millions of years (MY) based on calibrations from TimeTree. (TXT 18Â kb)
DOI: 10.6084/m9.figshare.c.3869131_d3
title: Additional file 3: of Refining the South Asian Origin of the Romani people

description: Estimating the genome-wide proportion of West Eurasian and South Asian ancestry of Roma. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3869137_d3
title: Additional file 3: of Ancient human miRNAs are more likely to have broad functions and disease associations than young miRNAs

description: miRNA Disease Associations. List of diseases compiled from HMDD, the number of human miRNAs associated with each disease, and the corresponding MeSH term for each disease. The file also includes average and median ages for disease miRNAs and Mann-Whitney U statistics comparing the ages of the miRNAs associated with each disease to the background set of all miRNAs. The “Collapsed” column indicates if the disease was collapsed into a single disease in the cancer-control analysis. (XLSX 33 kb)
DOI: 10.5281/zenodo.13748338
title: Proteomics - Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"

description: Proteomics raw data associated with Figures 3 and S3 in Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"
DOI: 10.5281/zenodo.13748339
title: Proteomics - Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"

description: Proteomics raw data associated with Figures 3 and S3 in Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"
DOI: 10.5281/zenodo.13748409
title: In vitro MukBEF pulldown - Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"

description: In vitro MukBEF pulldown raw data associated with Figures 3 and S3 in Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"
DOI: 10.5281/zenodo.13748408
title: In vitro MukBEF pulldown - Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"

description: In vitro MukBEF pulldown raw data associated with Figures 3 and S3 in Burmann et al "Loading of MukBEF involves a DNA capture state and is disrupted by a viral DNA mimic"
DOI: 10.6084/m9.figshare.c.3869140_d5
title: Additional file 5: Table S4. of Plasticity first: molecular signatures of a complex morphological trait in filamentous cyanobacteria

description: Candidate ORFs involved in true-branching phenotype. The table includes all ORFs in which one or more consistent orthologous TSSs have been detected. Consistent TSSs (as in Fig. 3) are written in red, orthologous TSSs are written in blue and singelton TSSs are written in gray. ORF and TSS positions on the left are according to Dagan et al. 2013 [11] annotation. ORF and TSS positions according to RefSeq genome annotation are listed on the right. (XLSX 318Â kb)
DOI: 10.6084/m9.figshare.c.3869167_d1
title: Additional file 1: of Draft genome sequences of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from human patients

description: Comparison of the functioning parts of strain SC-57 and SC-532. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.c.3870043_d4.v1
title: Additional file 4: Table S2. of Optimization of a metatranscriptomic approach to study the lignocellulolytic potential of the higher termite gut microbiome

description: Overview of the sequencing statistics, Table S3: Levels of rRNA reads detected by SortMeRNA software, Table S4: Levels of transcripts annotated to protein coding genes, Table S5: Broad overview of all transcripts with significant annotation to CAZymes together with relative abundances. (XLS 273Â kb)
DOI: 10.6084/m9.figshare.c.3870043_d4
title: Additional file 4: Table S2. of Optimization of a metatranscriptomic approach to study the lignocellulolytic potential of the higher termite gut microbiome

description: Overview of the sequencing statistics, Table S3: Levels of rRNA reads detected by SortMeRNA software, Table S4: Levels of transcripts annotated to protein coding genes, Table S5: Broad overview of all transcripts with significant annotation to CAZymes together with relative abundances. (XLS 273Â kb)
DOI: 10.6084/m9.figshare.c.3870532_d1.v1
title: Additional file 10: of Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

description: Maximum-likelihood concatenated ribosomal tree file. (TREE 72Â kb)
DOI: 10.6084/m9.figshare.c.3870523_d2.v1
title: Additional file 2: of Robust gene selection methods using weighting schemes for microarray data analysis

description: . R code for the modified samr package. (R 29 kb)
DOI: 10.6084/m9.figshare.c.3870532_d1
title: Additional file 10: of Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

description: Maximum-likelihood concatenated ribosomal tree file. (TREE 72Â kb)
DOI: 10.15468/dl.8qqqbf
title: Occurrence Download

description: A dataset containing 676 species occurrences available in GBIF matching the query:
{
 "Locality" : [
 "is Villiers-au-Bouin"
 ]
}

 The dataset includes 676 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039337-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3870523_d4
title: Additional file 4: of Robust gene selection methods using weighting schemes for microarray data analysis

description: R code for some examples of our method for detecting genes that are differentially expressed. (R 2 kb)
DOI: 10.6084/m9.figshare.c.3870523_d5.v1
title: Additional file 5: of Robust gene selection methods using weighting schemes for microarray data analysis

description: Fusarium data (CSV 2107 kb)
DOI: 10.6084/m9.figshare.c.3870535_d3.v1
title: Additional file 3: Table S3. of Mapping insecticide resistance and characterization of resistance mechanisms in Anopheles arabiensis (Diptera: Culicidae) in Ethiopia

description: Mosquito mortality data set. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3870532_d4.v1
title: Additional file 1: of Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

description: Table S1. Table of field measurements taken during well sampling. Table S2. Summary of metagenomic data. Table S3. Summary of bins derived from metagenomic data. Table S4. Glycoside hydrolase (GH) profiles for over 2000 CPR genomes. Values indicate the number of positive hits per GH family found within a given genome during HMM alignment. Table S5. Legend used to identify the genes in Figure 4. (XLSX 934Â kb)
DOI: 10.6084/m9.figshare.c.3870535_d3
title: Additional file 3: Table S3. of Mapping insecticide resistance and characterization of resistance mechanisms in Anopheles arabiensis (Diptera: Culicidae) in Ethiopia

description: Mosquito mortality data set. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3870523_d5
title: Additional file 5: of Robust gene selection methods using weighting schemes for microarray data analysis

description: Fusarium data (CSV 2107 kb)
DOI: 10.6084/m9.figshare.c.3870532_d4
title: Additional file 1: of Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

description: Table S1. Table of field measurements taken during well sampling. Table S2. Summary of metagenomic data. Table S3. Summary of bins derived from metagenomic data. Table S4. Glycoside hydrolase (GH) profiles for over 2000 CPR genomes. Values indicate the number of positive hits per GH family found within a given genome during HMM alignment. Table S5. Legend used to identify the genes in Figure 4. (XLSX 934Â kb)
DOI: 10.6084/m9.figshare.c.3870523_d6.v1
title: Additional file 6: of Robust gene selection methods using weighting schemes for microarray data analysis

description: Leukemia data (CSV 1168 kb)
DOI: 10.6084/m9.figshare.c.3870532_d5.v1
title: Additional file 2: of Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

description: Trimmed MUSCLE alignment of rps3 sequences. (AFA 911Â kb)
DOI: 10.6084/m9.figshare.c.3870523_d6
title: Additional file 6: of Robust gene selection methods using weighting schemes for microarray data analysis

description: Leukemia data (CSV 1168 kb)
DOI: 10.6084/m9.figshare.c.3870532_d10.v1
title: Additional file 7: of Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

description: Maximum-likelihood rps3 tree file. (TREE 419Â kb)