cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3644678_d3
title: MOESM3 of Thermal sensitivity of growth indicates heritable variation in 1-year-old rainbow trout (Oncorhynchus mykiss)

description: Additional file 3. Tank mean values for FI and FCR.
DOI: 10.6084/m9.figshare.c.3644681_d2
title: Additional file 6: Table S4. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

description: C. pecorum isolates and clinical samples Additional file 4: Table S3 and Additional file 6: Table S4. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3644684_d1
title: Additional file 5: of Travelling at a slugâ  s pace: possible invertebrate vectors of Caenorhabditis nematodes

description: Original data for the second field screen in Kiel in 2013. 373 invertebrates from various taxonomic groups were sampled between July and September 2013. C. elegans and C. remanei were found in association with chilopods, isopods and slugs.
DOI: 10.6084/m9.figshare.c.3644684_d2
title: Additional file 4: of Travelling at a slugâ  s pace: possible invertebrate vectors of Caenorhabditis nematodes

description: Original data for the first field screen in 2011 and 2012. C. elegans and C. remanei were found in association with isopods and slugs during the first screen between July 2011 and October 2012.
DOI: 10.6084/m9.figshare.c.3644684_d3
title: Additional file 7: of Travelling at a slugâ  s pace: possible invertebrate vectors of Caenorhabditis nematodes

description: Association of different slug species from the third field screen with C. elegans, C. remanei or C. briggsae. Slug species identity was characterized for a representative subset of the slugs from the third screen with a DNA barcoding approach using a fragment of the mitochondrial COI gene.
DOI: 10.6084/m9.figshare.c.3644684_d5
title: Additional file 8: of Travelling at a slugâ  s pace: possible invertebrate vectors of Caenorhabditis nematodes

description: Overview of slug species used in the first laboratory experiment. Species identity was determined for a subset of slugs with a DNA barcoding approach using a fragment of the mitochondrial COI gene.
DOI: 10.6084/m9.figshare.c.3644684_d6
title: Additional file 6: of Travelling at a slugâ  s pace: possible invertebrate vectors of Caenorhabditis nematodes

description: Original data for the third field screen in Kiel, Northern Germany, in 2014. 544 slugs and 123 substrate samples were collected between July and October 2014 from 21 locations in Kiel and the surroundings.
DOI: 10.15468/dl.39vd7x
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles nuneztovari Gabaldón, 1940"
 ]
}

 The dataset includes 705 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034012-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644738_d1
title: MOESM2 of Genome expansion in bacteria: the curious case of Chlamydia trachomatis

description: Additional file 2. Results from statistical models.
DOI: 10.6084/m9.figshare.c.3644738_d2
title: MOESM1 of Genome expansion in bacteria: the curious case of Chlamydia trachomatis

description: Additional file 1. Information regarding the C. trachomatis strains used in the study.
DOI: 10.6084/m9.figshare.c.3644744_d5
title: Additional file 1: of Evolutionary history exposes radical diversification among classes of interaction partners of the MLLE domain of plant poly(A)-binding proteins

description: Retrieved Viridiplantae CID genes. (XLSX 20 kb)
DOI: 10.15468/dl.e7dd48
title: Occurrence Download

description: A dataset containing 953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles oswaldoi Peryassú, 1922"
 ]
}

 The dataset includes 953 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034013-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644786_d3
title: Additional file 2: of Effect of maternal gestational weight gain on offspring DNA methylation: a follow-up to the ALSPAC cohort study

description: A table in Microsoft Excel format containing information regarding the regression model based on 0-18Â week GWG.
DOI: 10.6084/m9.figshare.c.3644837_d1
title: Additional file 1: of A novel real-time PCR assay for quantitative detection of Campylobacter fetus based on ribosomal sequences

description: Alignment of 16S rRNA gene sequences from Campylobacter species obtained from the SILVA database, in FASTA format. (TXT 4882 kb)
DOI: 10.6084/m9.figshare.c.3644846_d1
title: Additional file 1: Table S1. of Validated and longitudinally stable asthma phenotypes based on cluster analysis of the ADEPT study

description: List of clustering variables for several studies. Table S2. Clinical and demographic characteristics of ADEPT and U-BIOPRED severity cohorts. Table S3. Linear predictor function coefficients for classification to ADEPT-asthma baseline clinical clusters. Table S4. IL-13 in vitro stimulation (IVS) signature. Table S5. Plethysmography and PRO variable associations among the U-BIOPRED adult asthma clinical clusters. Figure S1. (A). Longitudinal ADEPT cluster classifications discordant with baseline Cluster A1. Figure S1. (B). Longitudinal ADEPT cluster classifications discordant with baseline Cluster A2. Figure S1. (C). Longitudinal ADEPT cluster classifications discordant with baseline Cluster A3. Figure S1. (D). Longitudinal ADEPT cluster classifications discordant with baseline Cluster A4. Figure S2. Characterization of selected subjects changing ADEPT cluster classifications. Figure S3. Characterization of selected subjects with stable ADEPT cluster classifications. Figure S4. IL-13 activity in U-BIOPRED participants classified to ADEPT clinical clusters. (XLSX 461 kb)
DOI: 10.6084/m9.figshare.c.3644843_d2
title: Additional file 1: Tables S1-S6. of Placental methylome analysis from a prospective autism study

description: Table S1. MethylC-seq sequencing statistics. Table S2. Average methylation over all PMDs and HMDs in placental samples. Table S3. Average DNA methylation for all chromosomes in placental samples. Table also shows average methylation over all autosomes, which is the average methylation over all CpG sites in the autosomes, not just the average over the chromosome-wide averages. Table S4. Average autosomal DNA methylation for ChromHMM states in placental samples. For each ChromHMM state and each placental sample, average methylation was calculated for all autosomal CpG sites in elements of that state. Table S5. Pyrosequencing analysis at the DLL1 locus. Percent methylation for each of the 3 CpG sites (P1, P2, P3) was determined by pyrosequencing for each ASD, TD, and ODC placental sample. Table S6. Demographic and environmental factors in relation to placental methylation. Statistical analyses of potential covariates including, run, order, coverage, ethnicity, and sex with methylation of PMD, HMD, % 20Â kb windows &lt;60% methylation, and DLL1 locus. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3644867_d2
title: Additional file 2: of Homology modeling and molecular dynamics provide structural insights into tospovirus nucleoprotein

description: The Genbank acession numbers of the viruses used at this work (TABLEDOCX 19 kb)
DOI: 10.6084/m9.figshare.c.3644870_d1
title: Additional file 1: of ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

description: Original annotation of reclassified proteins as NifO-like by ProClaT. The following list shows how the proteins classified in NifO-like are currently annotated, analyzing complete bacterial genomes. It is worth noting that less than 2Â % of the genes were originally annotated as nifO. (XLSX 12Â kb)
DOI: 10.15468/dl.unx8ua
title: Occurrence Download

description: A dataset containing 340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles paludis Theobald, 1900"
 ]
}

 The dataset includes 340 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034014-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644873_d5
title: Additional file 2: of 
                     Acanthamoeba containing endosymbiotic chlamydia isolated from hospital environments and its potential role in inflammatory exacerbation

description: Prevalence of amoebae with or without environmental chlamydiae in the hospital. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3644900_d3
title: Additional file 3 of SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification

description: Machine learning statistics. Statistics of all learning procedures made. (ODS 61 kb)
DOI: 10.6084/m9.figshare.c.3644933_d3
title: Additional file 2: of A reliability assessment of a direct-observation park evaluation tool: the Parks, activity and recreation among kids (PARK) tool

description: Kappa and percent agreement results for all items on the PARK Tool. This contains the kappa and percent agreement estimates for all the items on the PARK Tool. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3644933_d1
title: Additional file 1: of A reliability assessment of a direct-observation park evaluation tool: the Parks, activity and recreation among kids (PARK) tool

description: The Parks, Activity and Recreation among Kids (PARK) Tool. This contains the complete and final direct observation tool developed and tested for reliability in Montreal, Canada. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3644933_d2
title: Additional file 3: of A reliability assessment of a direct-observation park evaluation tool: the Parks, activity and recreation among kids (PARK) tool

description: Test-retest results for intra-observer reliability. This contains the intra-observer reliability estimates for 41 items on the PARK Tool. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3644936_d1
title: Additional file 3: of 
                     De novo assembly and analysis of changes in the protein-coding transcriptome of the freshwater shrimp Paratya australiensis (Decapoda: Atyidae) in response to acid sulfate drainage water

description: Differential abundance analysis results, functional annotations and putative descriptions of transcripts passing the minimum abundance threshold. (XLSX 2717Â kb)
DOI: 10.15468/dl.j8q4uk
title: Occurrence Download

description: A dataset containing 1249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles pharoensis Theobald, 1901"
 ]
}

 The dataset includes 1249 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034015-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644948_d7
title: Additional file 7: of Antagonism between Staphylococcus epidermidis and Propionibacterium acnes and its genomic basis

description: A: Seven genomic islands in strain S. epidermidis AU23. B: Ten genomic islands in strain S. epidermidis FS1. C: Eight genomic islands in strain S. epidermidis 14.1.R1. (XLSX 331 kb)
DOI: 10.6084/m9.figshare.c.3644969_d4
title: Additional file 4: Table S2. of Evolutionary history of endemic Sulawesi squirrels constructed from UCEs and mitogenomes sequenced from museum specimens

description: Number of reads for each individual enriched for UCEs, and total number of recovered loci. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3644972_d3
title: Additional file 1: of Reproducibility of Illumina platform deep sequencing errors allows accurate determination of DNA barcodes in cells

description: The script ‘barcodecleanup.R’ applies the clean-up procedure as described in the main text. It expects an input file consisting of a table with read counts, organized such that the columns represent the different samples and the rows represent the different barcodes. A detailed explanation of the requirements for the input file is given in the commentary of the script, and an example input file ‘testartificialdata.txt’ containing example artificial data is also provided. Barcodes containing at least one position with an ‘N’ should be removed from the input file and the barcodes should be sorted on the basis of total read count in descending order. Based on user-provided parameters (such as maximal sequence similarity between presumed correct mother-daughter pairs), the algorithm delivers two output files representing barcodes considered correct and those considered incorrect. (R 6 kb)
DOI: 10.6084/m9.figshare.c.3645041_d1
title: Additional file 1 of msBiodat analysis tool, big data analysis for high-throughput experiments

description: Excel spreadsheets. XLSX file containing the data from Sousa Abreu et al. which is used in the example of the article. (XLSX 611 kb)
DOI: 10.6084/m9.figshare.c.3645050_d1
title: Additional file 1: of An integrative systems genetics approach reveals potential causal genes and pathways related to obesity

description: Differentially expressed genes between the different obesity levels. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3645050_d2
title: Additional file 2: of An integrative systems genetics approach reveals potential causal genes and pathways related to obesity

description: Detected cis -eQTLs and trans -eQTLs in the complete dataset. (XLSX 90 kb)
DOI: 10.15468/dl.auy8sb
title: Occurrence Download

description: A dataset containing 1639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles plumbeus Stephens, 1828"
 ]
}

 The dataset includes 1639 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034016-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645104_d1
title: MOESM1 of Global comparison of chromosome X genes of pulmonary telocytes with mesenchymal stem cells, fibroblasts, alveolar type II cells, airway epithelial cells, and lymphocytes

description: Additional file 1. Data profiles for all genes in chromosome X.
DOI: 10.15468/dl.prutf6
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((130.3133 -2.013,130.318 -1.99042,130.29982 -1.92332,130.28373 -1.89186,130.26415 -1.87159,130.23198 -1.85761,130.18092 -1.85621,130.15039 -1.87087,130.15109 -1.9177,130.2178 -2.00558,130.26234 -2.02586,130.29252 -2.02388,130.3133 -2.013))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 122 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034017-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645104_d2
title: MOESM2 of Global comparison of chromosome X genes of pulmonary telocytes with mesenchymal stem cells, fibroblasts, alveolar type II cells, airway epithelial cells, and lymphocytes

description: Additional file 2. Details of up-regulated or down-regulated gene expression variations in chromosome X.
DOI: 10.15468/dl.d2fsae
title: Occurrence Download

description: A dataset containing 2724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles pseudopunctipennis Theobald, 1901"
 ]
}

 The dataset includes 2724 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034018-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645164_d1
title: Additional file 4: of Evolution of the avian Î˛-defensin and cathelicidin genes

description: Putative mature peptide sequences from annotated avian Î˛-defensin and cathelicidin genes (in fasta format). (FAS 42Â kb)
DOI: 10.6084/m9.figshare.c.3645164_d4
title: Additional file 5: of Evolution of the avian Î˛-defensin and cathelicidin genes

description: Net charge of putative avian Î˛-defensin and cathelicidin mature peptides. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3645164_d5
title: Additional file 1: of Evolution of the avian Î˛-defensin and cathelicidin genes

description: List of annotated Î˛-defensin and cathelicidin genes in 53 avian species with scaffold and coordinates information. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3645164_d6
title: Additional file 2: of Evolution of the avian Î˛-defensin and cathelicidin genes

description: Nucleotide sequences of annotated avian Î˛-defensin and cathelicidin genes (in fasta format). (FAS 204Â kb)
DOI: 10.6084/m9.figshare.c.3645164_d8
title: Additional file 6: of Evolution of the avian Î˛-defensin and cathelicidin genes

description: List of primate genes used in analyses with Genbank accession numbers. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3645179_d1
title: Additional file 2: of Epidemiological surveys of, and research on, soil-transmitted helminths in Southeast Asia: a systematic review

description: Full list of the included studies. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.c.3645179_d3
title: Additional file 3: of Epidemiological surveys of, and research on, soil-transmitted helminths in Southeast Asia: a systematic review

description: Preventive chemotherapy data for the Southeast Asian countries. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3645221_d3
title: Additional file 3: Table S3. of RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

description: Long non-coding RNAs identified as expressed in neutrophils. (XLSX 341Â kb)
DOI: 10.6084/m9.figshare.c.3645221_d4
title: Additional file 5: Table S5. of RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

description: Differentially expressed genes in different groups comparison. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3645221_d5
title: Additional file 2: Table S2. of RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

description: Gene ontology analysis of genes expressed in neutrophils. (XLSX 212Â kb)
DOI: 10.6084/m9.figshare.c.3645221_d6
title: Additional file 8: Table S8. of RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

description: Differentially expressed long non-coding RNAs in different groups comparison. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.c.3645221_d7
title: Additional file 4: Table S4. of RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

description: Isoforms identified as expressed in neutrophils. (XLSX 4567Â kb)
DOI: 10.6084/m9.figshare.c.3645221_d8
title: Additional file 1: Table S1. of RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states

description: Genes identified as expressed in neutrophils in all 9 subjects. (XLSX 893Â kb)
DOI: 10.6084/m9.figshare.c.3645224_d2
title: Additional file 1: of Technical validation of an RT-qPCR in vitro diagnostic test system for the determination of breast cancer molecular subtypes by quantification of ERBB2, ESR1, PGR and MKI67 mRNA levels from formalin-fixed paraffin-embedded breast tumor specimens

description: A: Sample list, B: Assay cutoffs for single markers, C: Assay validity criteria, D: Robustness data. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3645233_d3
title: Additional file 1: of A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions

description: List of putative GSTFs and strains used. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3645233_d4
title: Additional file 4: of A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions

description: Genetic interaction scores between GSTF pairs. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3645239_d1
title: Additional file 7: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: Details of functional annotation enrichment and clustering analysis. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3645239_d2
title: Additional file 4: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: Differential expression after sleep deprivation and all time point of recovery sleep following RUV normalization. (XLSX 179 kb)
DOI: 10.6084/m9.figshare.c.3645239_d3
title: Additional file 1: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: Positive control genes. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3645239_d5
title: Additional file 2: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: The impact of data integration on the detection of differential expression following sleep deprivation (SD). Differentially expressed genes detected, integrating all studies (Fig.Â 1). (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3645239_d6
title: Additional file 6: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: Clusters of differentially expressed genes as defined on the heatmap in Fig.Â 3b. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.c.3645239_d7
title: Additional file 5: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: Differential expression due to circadian time following RUV normalization. (XLSX 58 kb)
DOI: 10.15468/dl.g2qd54
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles pulcherrimus Theobald, 1902"
 ]
}

 The dataset includes 25 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034019-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.