cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6222191.v1
title: Symbaline: An electromagnetically actuated wine glass instrument

description: The Symbaline is a wine glass instrument, producing sounds by exciting a set of wine glasses using electromagnets. The electromagnets are driven by audio signals generated using any musical instrument, allowing musicians to play the Symbaline using their own instruments without additional training. Symbaline sound customisation is achieved by applying various audio effects on the input signal, as well as assembling different sets of ready-made wine glasses. This paper describes the Symbaline’s operation and sound characterisation, and explores different usage modes. These include playing by a classical guitar and playing by custom-designed virtual instruments, controlled with a MIDI keyboard.
DOI: 10.6084/m9.figshare.6222173
title: Molecular insights into the irreversible mechanical behavior of sickle hemoglobin

description: Sickle cell disease is caused by the amino acid substitution of glutamic acid to valine, which leads to the polymerization of deoxygenated sickle hemoglobin (HbS) into long strands. These strands are responsible for the sickling of red blood cells (RBCs), making blood hyper-coagulable leading to an increased chance of vaso-occlusive crisis. The conformational changes in sickled RBCs traveling through narrow blood vessels in a highly viscous fluid are critical in understanding; however, there are few studies that investigate the origins of the molecular mechanical behavior of sickled RBCs. In this work, we investigate the molecular mechanical properties of HbS molecules. A mechanical model was used to estimate the directional stiffness of an HbS molecule and the results were compared to adult human hemoglobin (HbA). The comparison shows a significant difference in strength between HbS and HbA, as well as anisotropic behavior of the hemoglobin molecules. The results also indicated that the HbS molecule experienced more irreversible mechanical behavior than HbA under compression. Further, we have characterized the elastic and compressive properties of a double stranded sickle fiber using six HbS molecules, and it shows that the HbS molecules are bound to each other through strong inter-molecular forces.
DOI: 10.6084/m9.figshare.6222173.v1
title: Molecular insights into the irreversible mechanical behavior of sickle hemoglobin

description: Sickle cell disease is caused by the amino acid substitution of glutamic acid to valine, which leads to the polymerization of deoxygenated sickle hemoglobin (HbS) into long strands. These strands are responsible for the sickling of red blood cells (RBCs), making blood hyper-coagulable leading to an increased chance of vaso-occlusive crisis. The conformational changes in sickled RBCs traveling through narrow blood vessels in a highly viscous fluid are critical in understanding; however, there are few studies that investigate the origins of the molecular mechanical behavior of sickled RBCs. In this work, we investigate the molecular mechanical properties of HbS molecules. A mechanical model was used to estimate the directional stiffness of an HbS molecule and the results were compared to adult human hemoglobin (HbA). The comparison shows a significant difference in strength between HbS and HbA, as well as anisotropic behavior of the hemoglobin molecules. The results also indicated that the HbS molecule experienced more irreversible mechanical behavior than HbA under compression. Further, we have characterized the elastic and compressive properties of a double stranded sickle fiber using six HbS molecules, and it shows that the HbS molecules are bound to each other through strong inter-molecular forces.
DOI: 10.6084/m9.figshare.6222155.v2
title: Shark Meshing (Bather Protection) Program, NSW, Australia: Catch and Effort Data 1950–2017.

description: "This dataset contains the total shark catch; catch of great white shark, tiger shark and whaler sharks; estimates of netting effort; and catch per unit effort (number of sharks per 100 net days) in the <i>Shark Meshing (Bather Protection) Program</i>, NSW, Australia for netting seasons 1950–2017.”<br><b>ReadMe: </b>Before using this dataset see the attached readme file and references therein.<br><b>Files Included:</b><br>- CSV file 1 “<i>Shark Meshing (Bather Protection) Program, NSW, Australia catch and effort data-1950–2017</i>” .- CSV file 2 “<i>Comparison of extracted total shark catch values and actual total shark catch values".</i>- CSV file 3 “<i>Effort estimate scenarios table for 2010–11 to 2016–2017</i>”.- Readme.doc- Readme.txt<b>When using this data-set cite</b>:<br>Gibbs, LM, Fetterplace, LC, Rees, MJ, Hanich, Q. Effects and effectiveness of lethal shark hazard management: The <i>Shark Meshing (Bather Protection) Program</i>, NSW, Australia. <i>People Nat</i>. 2019; 00: 1– 15. https://doi.org/10.1002/pan3.10063<br><br>This fileset is part of the Threatened and Threatening: Governing Sharks for Conservation and Human Safety project funded by Global Challenges UoW. <br>
DOI: 10.6084/m9.figshare.6222104
title: tde 2d

description: tde 2d<br>
DOI: 10.6084/m9.figshare.6222104.v1
title: tde 2d

description: tde 2d<br>
DOI: 10.6084/m9.figshare.6222005
title: Simulation Data for Figure 3.xlsx

description: The input binary data and the PAPRs obtained by simulations are involved in the uploaded excel file.
DOI: 10.6084/m9.figshare.6222005.v1
title: Simulation Data for Figure 3.xlsx

description: The input binary data and the PAPRs obtained by simulations are involved in the uploaded excel file.
DOI: 10.6084/m9.figshare.6222002
title: Supplementary Material for: Improvement of Spinosad Production upon Utilization of Oils and Manipulation of β-Oxidation in a High-Producing <b><i>Saccharopolyspora spinosa</i></b> Strain

description: Spinosad, a member of polyketide-derived macrolides produced in the actinomycete <i>Saccharopolyspora spinosa</i>, has been developed as a broad-spectrum and effective insecticide. The β-oxidation pathway could be an important source of building blocks for the biosynthesis of spinosad, thus the effect of vegetable oils on the production of spinosad in a high-yield strain was investigated. The spinosad production increased significantly with the addition of strawberry seed oil (511.64 mg/L) and camellia oil (520.07 mg/L) compared to the control group without oil (285.76 mg/L) and soybean oil group (398.11 mg/L). It also revealed that the addition of oils would affect the expression of genes involved in fatty acid metabolism, precursor supply, and oxidative stress. The genetically engineered strain, in which <i>fadD1</i> and <i>fadE</i> genes of <i>Streptomyces coelicolor</i> were inserted, produced spinosad up to 784.72 mg/L in the medium containing camellia oil, while a higher spinosad production level (843.40 mg/L) was detected with the addition of 0.01 mM of thiourea.
DOI: 10.6084/m9.figshare.6222002.v1
title: Supplementary Material for: Improvement of Spinosad Production upon Utilization of Oils and Manipulation of β-Oxidation in a High-Producing <b><i>Saccharopolyspora spinosa</i></b> Strain

description: Spinosad, a member of polyketide-derived macrolides produced in the actinomycete <i>Saccharopolyspora spinosa</i>, has been developed as a broad-spectrum and effective insecticide. The β-oxidation pathway could be an important source of building blocks for the biosynthesis of spinosad, thus the effect of vegetable oils on the production of spinosad in a high-yield strain was investigated. The spinosad production increased significantly with the addition of strawberry seed oil (511.64 mg/L) and camellia oil (520.07 mg/L) compared to the control group without oil (285.76 mg/L) and soybean oil group (398.11 mg/L). It also revealed that the addition of oils would affect the expression of genes involved in fatty acid metabolism, precursor supply, and oxidative stress. The genetically engineered strain, in which <i>fadD1</i> and <i>fadE</i> genes of <i>Streptomyces coelicolor</i> were inserted, produced spinosad up to 784.72 mg/L in the medium containing camellia oil, while a higher spinosad production level (843.40 mg/L) was detected with the addition of 0.01 mM of thiourea.
DOI: 10.6084/m9.figshare.6221993
title: Tweets

description: This collection allowing to analyse the spatio-temporel peculiarities of small-scale events on Twitter. We release a dataset related to New York City drawn from 2 collections of tweets:<strong>NY2014:</strong> Released by Zhang et al., SIGIR’16 (doi.org/10.1145/2911451.2911519) from 2014.08.01 to 2014.11.30.<strong>NY2016:</strong> This dataset was collected with Twitter API from 2016.10.01 to 2016.11.30. Each line corresponds to a tweet and contains the following information, separated by tabs:<strong>Tweet ID:</strong> Tweet identifier<strong>Event ID: </strong>Event identifier<strong>Groupe: </strong>Group associated to the event (determined according to the focus value)<strong>Topic ID: </strong>Topic of the eventIn accordance with Twitter's Terms of Service, we only provide identifiers of tweets.<br> If you use this dataset, please cite our paper:Paul Mousset, Yoann Pitarch, Lynda Tamine. 2018. Studying the Spatio-Temporal Dynamics of Small-Scale Events in Twitter. In Proceedings of the 29th ACM Conference on Hypertext and Social Media (HT '18). ACM, Baltimore, MD, USADOI : doi.org/ 10.1145/3209542.3209561
DOI: 10.6084/m9.figshare.6221993.v1
title: Tweets

description: This collection allowing to analyse the spatio-temporel peculiarities of small-scale events on Twitter. We release a dataset related to New York City drawn from 2 collections of tweets:<strong>NY2014:</strong> Released by Zhang et al., SIGIR’16 (doi.org/10.1145/2911451.2911519) from 2014.08.01 to 2014.11.30.<strong>NY2016:</strong> This dataset was collected with Twitter API from 2016.10.01 to 2016.11.30. Each line corresponds to a tweet and contains the following information, separated by tabs:<strong>Tweet ID:</strong> Tweet identifier<strong>Event ID: </strong>Event identifier<strong>Groupe: </strong>Group associated to the event (determined according to the focus value)<strong>Topic ID: </strong>Topic of the eventIn accordance with Twitter's Terms of Service, we only provide identifiers of tweets.<br> If you use this dataset, please cite our paper:Paul Mousset, Yoann Pitarch, Lynda Tamine. 2018. Studying the Spatio-Temporal Dynamics of Small-Scale Events in Twitter. In Proceedings of the 29th ACM Conference on Hypertext and Social Media (HT '18). ACM, Baltimore, MD, USADOI : doi.org/ 10.1145/3209542.3209561
DOI: 10.6084/m9.figshare.6221990
title: Topics

description: This collection allowing to analyse the spatio-temporel peculiarities of small-scale events on Twitter. We release a dataset related to New York City drawn from 2 collections of tweets:<strong>NY2014:</strong> Released by Zhang et al., SIGIR’16 (org/10.1145/2911451.2911519) from 2014.08.01 to 2014.11.30.<strong>NY2016:</strong> This dataset was collected with Twitter API from 2016.10.01 to 2016.11.30. Each line corresponds to a tweet and contains the following information, separated by tabs:<strong>Topic ID:</strong> Topic identifier<strong>Type:</strong> Topic category<strong>Keywords: </strong>Top keywords separated by space. In accordance with Twitter's Terms of Service, we only provide identifiers of tweets.<br> If you would like to use this dataset, please cite our paper:Paul Mousset, Yoann Pitarch, Lynda Tamine. 2018. Studying the Spatio-Temporal Dynamics of Small-Scale Events in Twitter. In Proceedings of the 29th ACM Conference on Hypertext and Social Media (HT '18). ACM, Baltimore, MD, USADOI : doi.org/ 10.1145/3209542.3209561
DOI: 10.6084/m9.figshare.6221990.v1
title: Topics

description: This collection allowing to analyse the spatio-temporel peculiarities of small-scale events on Twitter. We release a dataset related to New York City drawn from 2 collections of tweets:<strong>NY2014:</strong> Released by Zhang et al., SIGIR’16 (org/10.1145/2911451.2911519) from 2014.08.01 to 2014.11.30.<strong>NY2016:</strong> This dataset was collected with Twitter API from 2016.10.01 to 2016.11.30. Each line corresponds to a tweet and contains the following information, separated by tabs:<strong>Topic ID:</strong> Topic identifier<strong>Type:</strong> Topic category<strong>Keywords: </strong>Top keywords separated by space. In accordance with Twitter's Terms of Service, we only provide identifiers of tweets.<br> If you would like to use this dataset, please cite our paper:Paul Mousset, Yoann Pitarch, Lynda Tamine. 2018. Studying the Spatio-Temporal Dynamics of Small-Scale Events in Twitter. In Proceedings of the 29th ACM Conference on Hypertext and Social Media (HT '18). ACM, Baltimore, MD, USADOI : doi.org/ 10.1145/3209542.3209561
DOI: 10.6084/m9.figshare.6221987.v1
title: Data and code to reproduce Dallas et al. 2018 "Gauging support for macroecological patterns in helminth parasites"

description: <br>Code to recreate analyses from:<br>&gt; Dallas,TA, A Alonso Aguirre, S Budischak, C Carlson, V Ezenwa, B Han, S Huang, and PR Stephens 2018. Gauging support for macroecological patterns in helminth parasites. <br>
DOI: 10.6084/m9.figshare.6221960
title: DataSetVentura et al. 18.xlsx

description: Mean Median RTs for aligned/misaligned; congruent/incongruent, separately for small and big rotation
DOI: 10.6084/m9.figshare.6221960.v1
title: DataSetVentura et al. 18.xlsx

description: Mean Median RTs for aligned/misaligned; congruent/incongruent, separately for small and big rotation
DOI: 10.6084/m9.figshare.6221945
title: Supplementary element 2 from A primitive actinopterygian braincase from the Tournaisian of Nova Scotia

description: Data matrix used for phylogenetic analysis in nexus format. Also available on Dryad.
DOI: 10.6084/m9.figshare.6221945.v1
title: Supplementary element 2 from A primitive actinopterygian braincase from the Tournaisian of Nova Scotia

description: Data matrix used for phylogenetic analysis in nexus format. Also available on Dryad.
DOI: 10.6084/m9.figshare.6221933
title: Supplementary element 9 from A primitive actinopterygian braincase from the Tournaisian of Nova Scotia

description: Surface rendition of whole specimen in .wrl format. Available on Dryad
DOI: 10.6084/m9.figshare.6221933.v1
title: Supplementary element 9 from A primitive actinopterygian braincase from the Tournaisian of Nova Scotia

description: Surface rendition of whole specimen in .wrl format. Available on Dryad
DOI: 10.6084/m9.figshare.6221813
title: Supplementary Material for: Associations between Dietary Patterns and Post-Bronchodilation Lung Function in the SAPALDIA Cohort

description: <b><i>Background:</i></b> Chronic obstructive pulmonary disease (COPD) is not restricted to smokers. Dietary habits may contribute to the disease occurrence. Epidemiological studies point to a protective effect of fruit and vegetable intake against COPD.<i></i> <b><i>Objective:</i></b> To investigate the associations between dietary patterns and parameters of lung function related to COPD in the Swiss Cohort Study on Air Pollution and Lung and Heart Diseases in Adults (SAPALDIA). <b><i>Methods:</i></b> Data were included from the<i></i> second follow-up assessment of the SAPALDIA cohort in 2010–2011 using a food frequency questionnaire. Principal component factor analysis was used to derive dietary patterns, whose association with FEV1, FEV1/FVC, FEF2575, and COPD was investigated by applying multivariate regression analyses. <b><i>Results:</i></b><i></i> After adjustment for potential confounders, the “prudent dietary pattern” characterised by the predominant food groups vegetables, fruits, water, tea and coffee, fish, and nuts was positively associated with FEV1 (increase of 40 mL per SD, <i>p</i> &lt; 0.001). Also for factor 3 (“high-carbohydrate diet”), we found a significant positive association with FEV1 (with an increase per SD of 36 mL, <i>p</i> = 0.006). <b><i>Conclusions:</i></b> The main results are consistent with a protective effect of a diet rich in fruits, vegetables, fish, and nuts against age-related chronic respiratory disease. If confirmed in prospective cohorts, our results may guide nutritional counselling towards respiratory health promotion.
DOI: 10.6084/m9.figshare.6221813.v1
title: Supplementary Material for: Associations between Dietary Patterns and Post-Bronchodilation Lung Function in the SAPALDIA Cohort

description: <b><i>Background:</i></b> Chronic obstructive pulmonary disease (COPD) is not restricted to smokers. Dietary habits may contribute to the disease occurrence. Epidemiological studies point to a protective effect of fruit and vegetable intake against COPD.<i></i> <b><i>Objective:</i></b> To investigate the associations between dietary patterns and parameters of lung function related to COPD in the Swiss Cohort Study on Air Pollution and Lung and Heart Diseases in Adults (SAPALDIA). <b><i>Methods:</i></b> Data were included from the<i></i> second follow-up assessment of the SAPALDIA cohort in 2010–2011 using a food frequency questionnaire. Principal component factor analysis was used to derive dietary patterns, whose association with FEV1, FEV1/FVC, FEF2575, and COPD was investigated by applying multivariate regression analyses. <b><i>Results:</i></b><i></i> After adjustment for potential confounders, the “prudent dietary pattern” characterised by the predominant food groups vegetables, fruits, water, tea and coffee, fish, and nuts was positively associated with FEV1 (increase of 40 mL per SD, <i>p</i> &lt; 0.001). Also for factor 3 (“high-carbohydrate diet”), we found a significant positive association with FEV1 (with an increase per SD of 36 mL, <i>p</i> = 0.006). <b><i>Conclusions:</i></b> The main results are consistent with a protective effect of a diet rich in fruits, vegetables, fish, and nuts against age-related chronic respiratory disease. If confirmed in prospective cohorts, our results may guide nutritional counselling towards respiratory health promotion.
DOI: 10.6084/m9.figshare.6221180.v1
title: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015

description: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015, lake averaged data in daily, 8-day and monthly time scale.<br>
DOI: 10.6084/m9.figshare.6221180.v3
title: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015

description: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015, lake averaged data in daily, 8-day and monthly time scale.<br>
DOI: 10.6084/m9.figshare.6221180.v4
title: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015

description: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015, lake averaged data in daily, 8-day and monthly time scale.<br>
DOI: 10.6084/m9.figshare.6221180.v6
title: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015

description: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015, lake averaged data in daily, 8-day and monthly time scale.<br>
DOI: 10.6084/m9.figshare.6221180.v5
title: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015

description: A long-term data set of lake surface water temperature over the Tibetan Plateau derived from AVHRR 1981–2015, lake averaged data in daily, 8-day and monthly time scale.<br>
DOI: 10.6084/m9.figshare.6221138
title: Additional file 8: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

description: Table S6. Complete list of histones and histone modifying enzymes annotation. In the 6 model species (C. elegans, H. sapiens, D. melanogaster, S. cerevisae, S. pombe and A. thaliana), the number and the names of genes are indicated. Number of orthologs in RKN (M. incognita, M. javanica, M. arenaria and M. hapla) and other species of interest (G. pallida, G. rostochiensis, A. suum, T. spiralis, A. pisum, A. mellifera, S. mansoni, B. cinerea, L. maculans and P. falciparum) is indicated for each lineage. For M. incogntia, presence of RNA-seq transcriptional support is indicated by a cross. Substrates for the histone modifying enzymes of model species are indicated. Protein lineages in grey were not tested by phylogeny. ND: Not determined. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.6221138.v1
title: Additional file 8: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

description: Table S6. Complete list of histones and histone modifying enzymes annotation. In the 6 model species (C. elegans, H. sapiens, D. melanogaster, S. cerevisae, S. pombe and A. thaliana), the number and the names of genes are indicated. Number of orthologs in RKN (M. incognita, M. javanica, M. arenaria and M. hapla) and other species of interest (G. pallida, G. rostochiensis, A. suum, T. spiralis, A. pisum, A. mellifera, S. mansoni, B. cinerea, L. maculans and P. falciparum) is indicated for each lineage. For M. incogntia, presence of RNA-seq transcriptional support is indicated by a cross. Substrates for the histone modifying enzymes of model species are indicated. Protein lineages in grey were not tested by phylogeny. ND: Not determined. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.6221129
title: Additional file 5: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

description: Table S5. Number of epigenetic factors, classified by process, identified in root-knot nematodes compared to C. elegans. Number of epigenetic factors for each families is detailed according to the method of identification: based on either sequence similarity (orthoMCL); or presence of specifically associated protein domain (Pfam); and after validation by phylogeny (validated). ND: Not Determined. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.6221129.v1
title: Additional file 5: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

description: Table S5. Number of epigenetic factors, classified by process, identified in root-knot nematodes compared to C. elegans. Number of epigenetic factors for each families is detailed according to the method of identification: based on either sequence similarity (orthoMCL); or presence of specifically associated protein domain (Pfam); and after validation by phylogeny (validated). ND: Not Determined. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.6221126
title: Additional file 4: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

description: Table S4. Epigenetic factors of A. pisum. A cross indicates if the epigenetic factor has been previously identified in the literature and/or in the present study. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6221126.v1
title: Additional file 4: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

description: Table S4. Epigenetic factors of A. pisum. A cross indicates if the epigenetic factor has been previously identified in the literature and/or in the present study. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6221123
title: Additional file 3: of Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexuallyÂ reproducing species

description: Table S3. Epigenetic factors of S. mansoni. A cross indicates if the epigenetic factor has been previously identified in the literature and/or in the present study. (XLSX 15Â kb)