cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6652332
title: Optical tomography measurements and reconstructions of a multiple-scattering 3d-printed microphantom

description: This dataset contains 2 sets of measurements of a 3d-printed microphantom, carried out with optical diffraction tomography system at Warsaw University of Technology. The measurements are conducted for 2 different wavelengths: 633nm and 835nm. Also, tomographic reconstructions of these datasets are shown. The reconstructions were computed with 3 algorithms: GPSC [1], MSBP-I [2] and MSBP-E [3]. Additionally, model of the 3D-printed microphantom is given. All files are *.mat files. In the reconstruction files there are 4 variables: REC - reconstruction matrix with information about 3D refractive index values in the microphantom dx - sample size in the reconstruction in x-y direction dz - sample size in the reconstruction in z direction (if not given, dz=dx) niter - number of iterations that were computed to generate the reconstruction The variables in the sinogram files are: dx - sample size in tomographic projections lambda - wavelength M - magnification in the optical system n_immersion - refractive index of the immersion medium NA - numerical aperture of the optical system rayXY - x-y coordinates of vectors representing illumination directions from which tomographic projections were acquired SINOamp - amplitude distribution of tomographic projections SINOph - phase distributions of tomographic projections The variables in the phantom model files are: dx - sample size n_immersion - refractive index of simulated immersion n_phantom - refractive index of the phantom model [1] W. Krauze, “Optical diffraction tomography with finite object support for the minimization of missing cone artifacts,”277<br> Biomed. optics express 11, 1919–1926 (2020)<br> [2] S. Chowdhury, M. Chen, R. Eckert, D. Ren, F. Wu, N. Repina, and L. Waller, “High-resolution 3D refractive index292<br> microscopy of multiple-scattering samples from intensity images,” Optica 6, 1211 (2019).<br> [3] U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach288<br> to optical tomography,” Optica 2, 517 (2015).
description: {"references": ["W. Krauze, \"Optical diffraction tomography with finite object support for the minimization of missing cone artifacts,\"277 Biomed. optics express 11, 1919\u20131926 (2020).", "S. Chowdhury, M. Chen, R. Eckert, D. Ren, F. Wu, N. Repina, and L. Waller, \"High-resolution 3D refractive index292 microscopy of multiple-scattering samples from intensity images,\" Optica 6, 1211 (2019).", "U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, \"Learning approach288 to optical tomography,\" Optica 2, 517 (2015)."]}
DOI: 10.34740/kaggle/dsv/4363751
title: AutoXGB
DOI: 10.34740/kaggle/dsv/4363745
title: Health Workforce Shortage Areas
DOI: 10.6084/m9.figshare.21378112
title: Data and Code from Dynamic cluster structure and predictive modelling of music creation style distributions

description: Data and Code
DOI: 10.6084/m9.figshare.21378112.v1
title: Data and Code from Dynamic cluster structure and predictive modelling of music creation style distributions

description: Data and Code
DOI: 10.34740/kaggle/dsv/4363741
title: Analysis of Reddit Data Visualisations
DOI: 10.25502/fp4t-4068/d
title: Comparative analysis of proximate, cyanogenic potential, and glycemic indices of Gari made from improved Cassava (Manihot esculenta Crantz) varieties

description: This study investigated the relationship between the glycemic index (GI) of foods, and diabetes. The glycemic indices of eba (gari dough) made from selected four-cassava cultivars gari in apparently healthy subjects were assessed for their nutrients contents. Twenty cassava cultivars were obtained from the International Institute of Tropical Agriculture (IITA) Cassava Breeding Unit and analyzed for proximate and carbohydrate compositions and cyanogenic potential using standard procedures. Afterward, four cassava varieties (TMSIBA980002, TMS980505, TMEB7419 and TMS IBA961089A) were selected based on low, medium, moderately high and high total starch, free-sugar Amylose and Amylopectin content using a cluster analysis. The varieties selected were processed into gari and subsequently reconstituted in hot water into eba. The glycemic indices of the four  eba samples were determined randomly in apparently 23 apparently healthy volunteers. The results showed that the starch content of the selected varieties was 69.1% for TMEB7419, 71.6% for TMS980505, 72.7% for TMSIBA980002, and 74.5% for TMS IBA961089A. In contrast, the free sugar content varied from 1.80% in TMSIBA980002 to 3.32% in IBA961089A. The ratios of starch to sugar were significantly (p > 0.05) ranged from 22.49% in IBA961089A to 40.47% in TMS980505. The GIs obtained for the four eba samples were 88.1% for TMS TMSIBA980002; 87.2% for TMS980505; 86.4% for TMEB7419, and 89.1% for TMS IBA961089A. In conclusion, the GI of the eba samples in this study was high (above 70%); indicating that a high intake of such food could increase the risk of health problems associated with high blood glucose, such as Diabetes mellitus and obesity Therefore; TMEB7419 will produce fewer health problems with a percentage decrease of 3.10%, 1.94% and 0.92% relative to TMS IBA961089A, TMSIBA980002 and TMS980505. The information from this study will be useful for nutritionists, food scientists, breeders, and policymakers to design interventions for the high-consuming cassava products (eba) in communities.
DOI: 10.5517/ccdc.csd.cc2bmvf8
title: CCDC 2164030: Experimental Crystal Structure Determination

description: Related Article: Nan-Quan Jiang, Tian-Shu Wu, Min Pan, Zhong-Jian Cai, Shun-Jun Ji|2022|Org.Lett.|24|7465|doi:10.1021/acs.orglett.2c03057
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc267ys6
title: CCDC 2033438: Experimental Crystal Structure Determination

description: Related Article: Gong Li,  Qiao Zhang,  Shuang Yang,  Mengdi Zhu,  Yuejiao Fu,  Ziheng Liu,  Na Xing,  Lei Shi|2022|J.Coord.Chem.|75|1416|doi:10.1080/00958972.2022.2098472
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt9fx
title: CCDC 2169269: Experimental Crystal Structure Determination

description: Related Article: Richard Röß-Ohlenroth, Maryana Kraft, Hana Bunzen, Dirk Volkmer|2022|Inorg.Chem.|61|16380|doi:10.1021/acs.inorgchem.2c02394
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt9gy
title: CCDC 2169270: Experimental Crystal Structure Determination

description: Related Article: Richard Röß-Ohlenroth, Maryana Kraft, Hana Bunzen, Dirk Volkmer|2022|Inorg.Chem.|61|16380|doi:10.1021/acs.inorgchem.2c02394
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt9hz
title: CCDC 2169271: Experimental Crystal Structure Determination

description: Related Article: Richard Röß-Ohlenroth, Maryana Kraft, Hana Bunzen, Dirk Volkmer|2022|Inorg.Chem.|61|16380|doi:10.1021/acs.inorgchem.2c02394
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt9j0
title: CCDC 2169272: Experimental Crystal Structure Determination

description: Related Article: Richard Röß-Ohlenroth, Maryana Kraft, Hana Bunzen, Dirk Volkmer|2022|Inorg.Chem.|61|16380|doi:10.1021/acs.inorgchem.2c02394
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bv27j
title: CCDC 2170007: Experimental Crystal Structure Determination

description: Related Article: Elvin V. Salerno, Albano N. Carneiro Neto, Svetlana V. Eliseeva, Miguel A. Hernández-Rodríguez, Jacob C. Lutter, Timothée Lathion, Jeff W. Kampf, Stéphane Petoud, Luis D. Carlos, Vincent L. Pecoraro|2022|J.Am.Chem.Soc.|144|18259|doi:10.1021/jacs.2c04821
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bv28k
title: CCDC 2170008: Experimental Crystal Structure Determination

description: Related Article: Elvin V. Salerno, Albano N. Carneiro Neto, Svetlana V. Eliseeva, Miguel A. Hernández-Rodríguez, Jacob C. Lutter, Timothée Lathion, Jeff W. Kampf, Stéphane Petoud, Luis D. Carlos, Vincent L. Pecoraro|2022|J.Am.Chem.Soc.|144|18259|doi:10.1021/jacs.2c04821
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21377895.v1
title: Supplementary Material for: External Validity of a Randomized Controlled Trial on Duration of Antibiotics for the Treatment of Gram-Negative Bacteremia

description: <b><i>Introduction:</i></b> Reports regarding the external validity of randomized controlled trials (RCTs) are scarce. We aimed to assess the population external validity of an investigator-initiated RCT on the duration of antibiotics for the treatment of Gram-negative bacteremia by comparing patients included in the RCT to patients that were not included in the trial. <b><i>Methods:</i></b> Hospitalized patients with Gram-negative bacteremia were recruited into an RCT and randomized to receive 7 or 14 days of covering antibiotic therapy in Israel and Italy from 2013 to 2017. In a concomitant observational study, RCT participants were compared with patients who fulfilled the inclusion criteria but were not included in the trial due to participation in other trials, discharge before approached by researchers, refusal to participate, or unwillingness of the treating physician to allow participants’ recruitment. <b><i>Results:</i></b> Six hundred and four RCT patients were compared with 613 nonincluded patients. Almost 50% of nonincluded patients (288/613) were dependent on others for activities of daily living at baseline compared to 37.7% of RCT participants (228/604). Dementia was nearly 2-fold more frequent in nonincluded patients than those included (5.9% [36/613] versus 3.6% [22/604], <i>p</i> = 0.07). Patients who were not included in the RCT were more likely to acquire their infection in the hospital (53.3% [327/613] versus 29.1% [176/604], <i>p</i> &lt; 0.001). The primary composite outcome of mortality, clinical failure, readmissions, or extended hospitalization at 90 days occurred in 353 of 613 nonincluded patients (57.6%) compared to 299 of 604 RCT participants (49.6%), <i>p</i> = 0.005. However, on multivariate analysis noninclusion in the RCT was not an independent risk factor for clinical failure and mortality. <b><i>Conclusions:</i></b> RCTs, even with broad eligibility criteria, do not represent the whole spectrum of patients and leave out a population with more severe illness for whom the evidence is lacking.
DOI: 10.18170/dvn/z2enqx
title: Sea-level controlled climate modulation of magnetic mineral records in the central Bengal Fan

description: This data set includes raw data for hysteresis loop, isothermal remanent magnetization (IRM) acquisition curve, first-order reversal curve (FORC), and low temperature magnetic property measurements.
DOI: 10.5281/zenodo.6918355
title: Integration of single-cell transcriptome and chromatin accessibility of early gonads development among goats, pigs, macaques, and humans

description: The early gonads of mammals contain primordial germ cells (PGCs) and somatic cell precursors that are essential for sex determination and gametogenesis. Although it is extensively documented in mice, the development of early gonads in non-rodents remains to be delineated. Because molecular differences between mouse and human gonadal cells have been reported, it warrants the study of the key markers and regulatory features that are conserved or divergent between non-rodent species and human. Here, we integrate single-cell transcriptome and chromatin accessibility analysis to identify regulatory signatures of PGCs and somatic cells in the early gonads of goats, pigs, macaques, and humans. We identify the evolutionarily conserved and species-specific events, including genes expression, signaling pathways, and cell-cell interactions. We also uncover potential cis-regulatory elements and key transcription factors in PGCs and somatic cells. Our datasets provide important resources for better understanding the evolutionary programs of PGCs and gonadal somatic cell development in mammals.
DOI: 10.5281/zenodo.6918354
title: Integration of single-cell transcriptome and chromatin accessibility of early gonads development among goats, pigs, macaques, and humans

description: The early gonads of mammals contain primordial germ cells (PGCs) and somatic cell precursors that are essential for sex determination and gametogenesis. Although it is extensively documented in mice, the development of early gonads in non-rodents remains to be delineated. Because molecular differences between mouse and human gonadal cells have been reported, it warrants the study of the key markers and regulatory features that are conserved or divergent between non-rodent species and human. Here, we integrate single-cell transcriptome and chromatin accessibility analysis to identify regulatory signatures of PGCs and somatic cells in the early gonads of goats, pigs, macaques, and humans. We identify the evolutionarily conserved and species-specific events, including genes expression, signaling pathways, and cell-cell interactions. We also uncover potential cis-regulatory elements and key transcription factors in PGCs and somatic cells. Our datasets provide important resources for better understanding the evolutionary programs of PGCs and gonadal somatic cell development in mammals.
DOI: 10.25625/w9pwcx
title: Pathway maps for Metagenome-assembled genome sequences from Marsberg Kilianstollen

description: Pathways maps of the MAGs that were classified as members of Actinobacteria (Mberg 009), “Candidatus Binatota” (Mberg 010 and 011), Chlorobacteria (Mberg 002, 006, 008, and 019), and Deinococcus-Thermus (Mberg 015). Chloroflexota-Mberg002, Dehalococcoidia-Mberg008, Chloroflexia-Mber006 and Ktedonobacteria-Mberg019
DOI: 10.5676/gruan/rs-11g-gdp.1
title: RS-11G GRUAN Data Product Version 1 (RS-11G-GDP.1)

description: This dataset comprises reference radiosoundings performed with the Meisei RS-11G. Reference in this case means that: all known biases are corrected for, best possible vertically resolved uncertainty estimates, well-documented correction algorithms, extensive meta data collection.

The GCOS (Global Climate Observing System) Reference Upper-Air Network (GRUAN) data processing for the Meisei RS-11G radiosonde was developed to meet the criteria for reference measurements. These criteria stipulate the collection of metadata, the use of well-documented correction algorithms, and estimates of the measurement uncertainty. An important and novel aspect of the GRUAN processing is that the uncertainty estimates are vertically resolved. The algorithms that are applied in version 1 of the GRUAN processing to correct for systematic errors in radiosonde measurements of pressure, temperature, humidity, and wind, as well as how the uncertainties related to these error sources are derived. The RS-11G was regularly launched at Tateno (TAT) between July 2013 and September 2017 and during January to February, 2018. It has also been regularly launched at Syowa (SYO) since March 20th, 2018.

An additional GRUAN requirement for performing reference measurements with the RS-11G is that the manufacturer-prescribed procedure with the indoor environment for the radiosonde's preparation and the supplementary procedure with the Standard Humidity Chamber (SHC) at 0 %RH and 100 %RH environment are followed. The reference measurements with SHC are applied for the recalibration of the humidity sensors. For the dominant error source, solar radiation, laboratory experiments were performed to investigate and model its effect on the RS-11G's temperature and humidity measurements.

GRUAN uncertainty estimates are 0.22 K for night-time temperature measurements and approximately 0.30 K at 25 km during daytime. The other uncertainty estimates are up to 8 %RH for humidity, 50 m for altitude, 0.1 hPa for pressure, 1 m/s for wind speed, and 1° for wind direction.

Intercomparison measurements with Vaisala RS92-GDP show that the temperature of RS-11G-GDP is 0.4 K lower than RS92-GDP in the stratosphere at daytime. For the relative humidity measurements, the difference of RS-11G-GDP from RS92-GDP is -2 %RH under 90 – 100 %RH conditions and 5 %RH under &lt;= 50 %RH conditions. Intercomparison measurements with the cryogenic frostpoint hygrometer (CFH), RS-11G gave 1 – 10 %RH higher values than the CFH in the troposphere.
DOI: 10.17632/hyvdz7khs6.1
title: Significant formation of sulfate aerosols contributed by the heterogeneous drivers of dust surface

description: The data is coupled with the paper titled “Significant formation of sulfate aerosols contributed by the heterogeneous drivers of dust surface”. A preprint has been posted based on this dataset, as cited follows. The serial number of the sheet in dataset corresponds to that of the figure in preprint. 
Wang, T., Liu, Y., Cheng, H., Wang, Z., Fu, H., Chen, J., and Zhang, L.: Significant formation of sulfate aerosols contributed by the heterogeneous drivers of dust surface, Atmos. Chem. Phys. Discuss. [preprint], https://doi.org/10.5194/acp-2022-227, in review, 2022.
DOI: 10.5281/zenodo.1317042
title: Incites Analysis Of Funding Agencies Brazil And Universidade De Sao Paulo

description: Levantamento realizado na <strong>Plataforma InCites</strong> entre os dias 03 e 19 de julho de 2018, com dados atualizados em 16 de junho de 2018 e conteúdo da Web of Science indexado até 29 de abril de 2018 revela quais são as entidades de financiamento que mais investem na pesquisa de autores brasileiros e autores da Universidade de São Paulo (USP). A partir do Módulo Funding Agencies, foi possível levantar por localização geográfica e por nome da organização os dados de financiamento coletados da seção de Agradecimentos (<em>Acknowledgments</em>) ou do Rodapé dos artigos publicados e indexados na base Web of Science
DOI: 10.5281/zenodo.1492582
title: ESA SEOM-IAS – Measurement and ACS database SO2 UV region

description: The database contains measurements and absorption cross sections generated within the framework of the ESA project SEOM-IAS (Scientific Exploitation of Operational Missions - Improved Atmospheric Spectroscopy Databases), ESA/AO/1-7566/13/I-BG. Details on the project can be found at http://www.wdc.dlr.de/seom-ias/.

The measurements were recorded at the German Aersopace Center (DLR) to provide a new absorption cross section database for SO2 according to the needs of the TROPOMI instrument aboard the Sentinel 5-P satellite. The data are compiled in two zip files, one for the measurements (SO2_UV_region_measurement_database_20112018.zip), one for the absorption cross sections (SO2_UV_region_absorption_cross_section_database_20112018.zip) and a readme file (ESA_SEOM_IAS_spectra_SO2UVRegion_readme.docx).
DOI: 10.5676/eum_saf_cm/fcdr_mwi/v002
title: Fundamental Climate Data Record of SSM/I / SSMIS Brightness Temperatures

description: The CM SAF Fundamental Climate Data Record (FCDR) of SSM/I and SSMIS brightness temperatures covers the time period from July 1987 to December 2013 including all available data from the six SSM/I radiometers aboard F08, F10, F11, F13, F14, and F15 and from the three SSMIS radiometers aboard F16, F17, and F18. It provides homogenised and inter-calibrated brightness temperatures in a user friendly data format. SSM/I and SSMIS data are used for a variety of applications, such as analyses of the hydrological cycle and related atmospheric and surface parameters, as well as remote sensing of sea ice. The improved homogenization and inter-calibration procedure ensures the long term stability of the FCDR for climate related applications.
All available raw data records have been reprocessed to a common standard, starting with the calibration of the raw Earth counts, to ensure a completely homogenized data record.  The data processing accounts for several known issues with the SSM/I and SSMIS instruments and corrects calibration anomalies due to along-scan inhomogeneity, moonlight intrusions, sunlight intrusions, and emissive reflector. Furthermore, the inter-calibration model incorporates a scene dependent inter satellite bias correction and a non-linearity correction to the instrument calibration.
The data files contain all available original sensor data and metadata to provide a completely traceable climate data record. Inter-calibration and Earth incidence angle normalization offsets are available as additional layers within the data files in order to keep this information transparent to the users. The data record is complemented with radiometer sensitivities, quality flags, surface types, and Earth incidence angles.
DOI: 10.5281/zenodo.7156188
title: Historical Arabidopsis thaliana genomes from Germany

description: We report short-read Illumina sequencing of 35 <em>Arabidopsis thaliana</em> herbarium specimens collected in Southern Germany from 1817 to 1957. The historical genomes were sequenced to an average depth of ~7X. The herbarium-derived sequences showed patterns of degradation typical of ancient DNA with average read lengths of 78 bp, endogenous DNA content between 26%-93% (mean 72%; median 74%) and enrichment of cytosine to thymine substitutions at the read’s termini. We provide the sequences to the public with open access.