cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1279672.08fu
title: SH1279672.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1279673.08fu
title: SH1279673.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.48443/4n0d-8p05
title: Surface water microbe marker gene sequences (DP1.20282.001)
title: RELEASE-2024

description: This data product contains the quality-controlled laboratory metadata and 16S and ITS marker gene sequences derived from NEON's surface water microbial sampling. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Queries for the basic data product package will return metadata tables that include laboratory methods and DNA extraction, PCR amplification, and sequencing metadata for samples from the queried sites and date range. Queries for the expanded package will also include a table containing links to the raw sequence data files, which can be used to download the sequences from the NEON data portal. 

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

amc_fieldGenetic: 30

amc_fieldSuperParent: 30

mmg_swDnaExtraction: 240

mmg\_swMarkerGeneSequencing\_16S: 240

mmg\_swMarkerGeneSequencing\_ITS: 240

mmg\_swPcrAmplification\_16S: 240

mmg\_swPcrAmplification\_ITS: 240

mmg_swRawDataFiles: 240
description: Surface water microbe samples are collected at the same time and location as surface water cell count samples and surface water chemistry samples once per month in wadeable streams (12 times per year) and every-other month in lakes and rivers (6 times per year). In wadeable streams, surface water microbe samples are collected near the downstream S2 sensor location. In lakes and rivers, microbial samples are collected near the buoy sensor set at 1 sampling depth in unstratified systems and up to 3 depths in stratified lakes. Surface water grab samples are filtered on 0.22 um Sterivex capsule filters, capped and flash-frozen in the field. The filters are stored and shipped frozen to an analytical facility for DNA extraction, sample preparation and high-throughput sequence analysis using primer sets targeting the ribosomal RNA gene operon. Laboratory metadata are passed through the NEON automated ingest process for QC testing and are published on the NEON data portal. DNA sequence data undergo QC testing and unique URLs are generated to enable data download. Instrumentation:
DOI: 10.48443/rtwy-b414
title: Surface water microbe metagenome sequences (DP1.20281.001)
title: RELEASE-2024

description: This data product contains the quality-controlled laboratory metadata and minimally processed sequence data from NEON's surface water microbial shotgun metagenomics sequencing. For details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage. Queries for the basic data product package will return metadata tables that include field observations and measurements, laboratory methods, and results from DNA extraction, sample preparation, and sequencing for samples from the specified sites and within the specified date range. Queries for the expanded package will also include a table containing links to the raw sequence data files. 

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

mms_swMetagenomeDnaExtraction: 240

mms_swMetagenomeSequencing: 240

mms_swRawDataFiles: 240

fieldSuperParent: 30 days

fieldGenetic: 30 days
description: Surface water metagenomic samples are collected once per year during the approximate period of peak productivity. The metagenomics sampling occurs at the same time and location as surface water chemistry sampling. In wadeable streams, samples are collected near the downstream S2 sensor location. In lakes and rivers, samples are collected near the buoy sensor set at 1 sampling depth in unstratified systems and up to 3 sampling depth(s)in stratified lakes. Surface water grab samples are filtered on 0.22 um Sterivex capsule filters, capped and flash-frozen in the field. The filters are stored on dry ice in the field, and later are shipped frozen to an analytical facility for DNA extraction, sample preparation and shotgun metagenomic sequencing. Laboratory data are then delivered to NEON, where they undergo QC testing and are published on the NEON Data Portal. Instrumentation:
DOI: 10.48443/3pnx-vp94
title: Temperature (PRT) in surface water (DP1.20053.001)
title: RELEASE-2024

description: This data product contains quality-controlled continuous surface water temperature readings from a sensor within each of NEON's wade-able stream sensor sets.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: Surface water temperature is measured using a platinum resistance thermometer that acquires resistance readings at 1 Hz. NEON coverts the raw resistance data product into temperature and reports at 1 minute intervals. Instrumentation: Thermometrics -- R032-00000048
DOI: 10.48443/4wds-5b25
title: Temperature at specific depth in surface water (DP1.20264.001)
title: RELEASE-2024

description: Temperature at specific depths on buoys is measured every minute and is reported as 1-minute instantaneous measurements and 30-minute mean values. A temperature chain with between 3 and 10 thermistors (depending on lake depth) is affixed from the buoy at the water surface. The shallowest thermistor is located at 5 cm below the water surface. Deeper thermistors have their depth published with the data and vary for each lake or river.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: The buoys are comprised of sensor sets which measure meteorological parameters over a water surface along with submerged sensors that measure physical and chemical parameters of the water body. Some of these sensors are unique to the buoy subsystem and others are shared with other NEON subsystems, such as the wadeable stream sensor sets or terrestrial towers. Due to power, space, and data storage constraints on the buoy, the configuration of sensors deployed on a buoy may be different than those in other parts of NEON. Instrumentation: Precision Measurement Engineering Inc. - T-Chain RS 232/485
DOI: 10.48443/br51-rd19
title: Temperature of groundwater (DP1.20217.001)
title: RELEASE-2024

description: Groundwater plays an important role in modulating temperature of surface water, which is critical to habitat quality and ecosystem function. NEON measures groundwater temperature at high temporal resolution. Three to eight wells are available per aquatic site. From NEON groundwater elevation measurements, the magnitude and direction of groundwater flow can be calculated, which will help to inform the heat flux between groundwater and surface water. This data product includes continuous quality-controlled groundwater temperature captured every 5 minutes and are reported as 5-minute instantaneous measurements and 30-minute averages.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: Multiple groundwater wells per aquatic site are installed in triangular arrays where local features allow. Temperature of groundwater is measured in a site-specific array designed to capture shallow groundwater flow and exchange with the surface water feature at the site. Instrumentation: In-Situ, Inc. - Aqua TROLL 200
DOI: 10.48443/4d7n-w481
title: Tick pathogen status (DP1.10092.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data derived from NEON's tick pathogen testing. Products resulting from this sampling include results of testing individual ticks collected during NEON tick sampling for pathogen presence/absence. See NEON Product Ticks sampled using drag cloths (DP1.10093.001) for data on the abundance and diversity of ticks collected at NEON sites. Following collection, tick samples are sent to a professional taxonomist where ticks are identified to species and sex. A subset of positively-identified nymphal ticks are tested for the presence of bacterial and protozoan pathogens. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

tck_pathogen: 390

tck_pathogenqa: 390
description: A target of 130 individual ticks per site per year are selected for pathogen testing, with the total numbers tested in a given site-year dependent on availability. Ixodes scapularis and Ixodes pacificus (if available beyond what is used for archive) nymphs are targeted for testing of Anaplasma phagocytophilum, Babesia microti, Ehrlichia muris-like agent, Borrelia burgdorferi sensu lato, Borrelia miyamotoi, and Borrelia mayonii. Nymphs in the genera Amblyomma and Dermacentor (if available beyond what is used for archive) are targeted for testing of Francisella tularensis, Rickettsia rickettsia, Anaplasma phagocytophilum, Ehrlichia chaffeensis, Ehrlichia ewingii, and Borrelia lonestari. Instrumentation:
DOI: 10.48443/3zmh-xx57
title: Ticks sampled using drag cloths (DP1.10093.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data from the Tick and Tick-Borne Pathogen Sampling protocol. Tick abundance and diversity are sampled at regular intervals by NEON field technicians at core and gradient sites using drag or flag sampling techniques. For additional details on protocol, see the TOS Protocol and Procedure: Tick and Tick-Borne Pathogen Sampling. Following collection, samples are sent to a professional taxonomist where ticks are identified to species and lifestage and/or sex. Identified ticks are then processed for pathogen analysis or preserved for final archiving. Products resulting from this sampling and processing include records of when ticks were sampled and the taxonomic and abundance data of ticks captured. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

tck_fielddata: 30

tck_taxonomyProcessed: 300

tck_taxonomyRaw: 300

tck_identificationHistory: 7
description: During the growing season, sampling is conducted every three weeks at sites where more than five ticks have been detected in the last year and every six weeks elsewhere. Beginning in 2022, sites remain at three-week sampling intervals for five years after detection of more than five ticks. Sampling also occurs only if the high temperature on two consecutive days prior to planned sampling exceeds 0 °C, and the ground is dry. Instrumentation:
DOI: 10.48443/t7rj-pk25
title: Water quality (DP1.20288.001)
title: RELEASE-2024

description: Water quality is measured once per minute at stream sensor sets and once per 5 minutes on buoys at lake and river sites. It is reported as 1- or 5-minute instantaneous measurements.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: The water quality sondes are deployed at stream sensor sets and lake and river buoys. At stream sites, the sondes are affixed to a post at a static depth relative to the stream bottom. The upstream sensor set #1 (S1) collects specific conductance, dissolved oxygen, pH, chlorophyll, and turbidity, but no fDOM. The downstream sensor set #2 (S2) collects specific conductance, dissolved oxygen, pH, chlorophyll, turbidity and fDOM. The buoy-deployed multisondes collect specific conductance, dissolved oxygen, pH, chlorophyll, turbidity, fDOM, and depth. At all but the Flint River, GA (FLNT) buoys, the water quality multisonde is fixed to a profiling winch to collect data from multiple depths every 4 hours and from 0.5 m parked depth when not profiling. Due to the high velocity of the Flint River (FLNT), one multisonde is deployed at a fixed depth of 0.5 m below the water surface. Instrumentation: YSI EXO2 Multiparameter Sonde; YSI EXO turbidity sensor; YSI EXO total algae PC sensor; YSI EXO pH sensor; YSI EXO dissolved oxygen sensor; YSI EXO fDOm sensor; YSI EXO conductivity and temperature sensor; YSI EXO central wiper
DOI: 10.48443/ybbh-xr11
title: Wet deposition chemical analysis (DP1.00013.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data from NEON's wet deposition protocol. Major ion concentrations, pH, and conductivity are measured in precipitation samples.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

wdp_chemLab: 90

wdp_collection: 30

wdp_collectionChem: 30

wdp_sensor: 30
description: Wet deposition chemistry is sampled in conjunction with stable isotope concentration in precipitation (DP1.00038.001). Samples are collected in a climate controlled wet deposition collector located at the tower top of terrestrial sites, and at the meteorologic tower of select aquatic sites. The automated assembly detects precipitation with an optical sensor and opens to collect wet deposition during all rain events. Every two weeks samples are retrieved, filtered, and sent for analysis. Instrumentation: N- Con Systems Company Wet Deposition Collector, Manufacture Model No: NEON 00-127-7
DOI: 10.48443/ttgx-wr79
title: Windspeed and direction above water on-buoy (DP1.20059.001)
title: RELEASE-2024

description: Wind speed and direction on buoys are measured 11 times per minute and reported as 2- and 30-minute mean values. The buoy wind sensor, and therefore data processing, is different than other wind sensors at aquatic met stations and on the terrestrial tower.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: The buoys are comprised of sensor sets which measure meteorological parameters over a water surface along with submerged sensors that measure physical and chemical parameters of the water body. Some of these sensors are unique to the buoy subsystem and others are shared with other NEON subsystems, such as the wadeable stream sensor sets or terrestrial towers. Due to power, space, and data storage constraints on the buoy, the configuration of sensors deployed on a buoy may be different than those in other parts of NEON. Instrumentation: RM Young 05108-45 Wind Monitor-HD Alpine; Honeywell HMR 3330
DOI: 10.48443/6kxg-hb11
title: Zooplankton collection (DP1.20219.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data and metadata from NEON's aquatic zooplankton collection protocol, as well as associated taxonomic, morphometric, and count analyses data provided by a contracted lab. Field samples are collected in the water column of lakes using the most appropriate sampler (vertical tow net or Schindler trap) for the depth of water, preserved in ethanol in the field, and shipped to a contracting lab for analysis. For additional details, see the user guide, protocols, science design, and lab SOPs listed in the Documentation section in this data product's details webpage.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

zoo_fieldData: 30

zoo_perSample: 210

zoo_taxonomyProcessed: 210

zoo_taxonomyRaw: 210

zoo_perVial: 210

zoo_identificationHistory: 7
description: Zooplankton samples are collected three times per year at lake sites during aquatic biology bout windows, roughly in spring, summer, and fall. Samples are collected using either a tow net (water deeper than 4 m) or a Schindler-Patalas trap (water shallower than 4 m) depending on the depth at the sampling location. Samples are collected near the NEON profiling buoy as well as two littoral sensor sets. Samples are preserved in ethanol in the field and shipped to a taxonomy lab for sorting and identification, including count of each taxon, summary length and width measurements for each taxon per sample (to nearest mm) and identification to lowest practical taxon (genus or species). Instrumentation:
DOI: 10.48443/4qw2-5804
title: Zooplankton metabarcoding (DP1.20221.001)
title: RELEASE-2024

description: This data product contains the quality-controlled, native sampling resolution data and metadata from NEON's aquatic zooplankton metabarcoding sampling protocol, as well as associated metadata provided by a contracted lab. Field samples are collected in the water column of lakes using the most appropriate sampler (vertical tow net or Schindler trap) for the depth of water at the same time and location as morphological taxonomy samples, preserved in ethanol in the field, and shipped to a contracting lab for processing and sequencing. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Queries for this data product return a downloadable data package with laboratory methods and DNA extraction, PCR amplification, and sequencing metadata for samples from the queried sites and date range. Queries for the expanded package will also include a table containing links to the raw sequence data files.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

zoo_fieldData: 30

zoo_dnaExtraction: 240

zoo_markerGeneSequencing: 240

zoo_pcrAmplification: 240

zoo_dnaRawDataFiles: 240

zoo_metabarcodeTaxonomy: 240

inv_metabarcodeTaxonList: 240

inv_metabarcodeSummary: 240

inv_dnaExtractionStandard: 240

inv_markerGeneSequencingStandard: 240

inv_pcrAmplificationStandard: 240

inv_dnaRawDataFilesStandard: 240

inv_metabarcodeTaxonomyStandard: 240
description: Zooplankton metabarcoding samples are collected three times per year at lake sites during aquatic biology bout windows, roughly in spring, summer, and fall. Samples are collected using either a tow net (water deeper than 4 m) or a Schindler-Patalas trap (water shallower than 4 m) depending on the depth at the sampling location. Samples are collected near the NEON profiling buoy as well as the littoral sensor sets. Samples collected during the mid-summer sampling bout (Bout 2) are sent to an external facility for homogenization and high-throughput sequencing. Samples collected during the spring and fall (Bout 1 and Bout 3) are preserved in ethanol and shipped to the NEON Biorepository for archiving. Instrumentation:
DOI: 10.17632/4nvsv9jdgt.1
title: Advanced imaging in SA of the adult native hip joint

description: Data used for "Advanced imaging shows extra-articular abscesses in two out of three adult patients with septic arthritis of the native hip joint."
DOI: 10.17632/ygfz5xfsxs.1
title: Misconstruction of Sex Education in Ghana: An Analysis of Social Media Response to Comprehensive Sex Education

description: The data entails social media feeds (Facebook and Twitter) about the introduction of Sex education in the basic school curriculum of Ghana.
DOI: 10.5281/zenodo.10581738
title: Nutzung von ChatGPT 3.5

description: Datierung meiner Nutzung von KI im Rahmen unseres erstellten Podcasts "Klimatographie"
DOI: 10.5281/zenodo.10581739
title: Nutzung von ChatGPT 3.5

description: Datierung meiner Nutzung von KI im Rahmen unseres erstellten Podcasts "Klimatographie"