cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3q2sbj
title: Occurrence Download

description: A dataset containing 36531 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Archilochus colubris (Linnaeus, 1758)"
 ]
}

 The dataset includes 36531 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023409-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4pwfd7
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Chionolaena lychnophorioides Sch.Bip."
 ]
}

 The dataset includes 126 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023412-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjegnf
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scorpaena grandicornis Cuvier, 1829",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 250 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023413-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zd2nu5
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-77.24675 1.00196,-75.24302 0.38011,-72.54834 -1.72727,-70.37187 -1.9691,-69.78457 -1.58908,-70.30278 -0.48357,-70.09549 1.6238,-68.88634 2.52203,-67.78083 5.9422,-69.37 6.04584,-70.47551 6.77133,-72.79017 7.08225,-73.20474 8.9478,-73.06655 10.67516,-72.23742 11.78067,-74.06841 10.91699,-76.0376 8.87871,-77.24675 7.32408,-77.00492 5.80401,-76.86674 3.83482,-78.07589 2.07292,-77.24675 1.00196))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Herpailurus yagouaroundi (É.Geoffroy Saint-Hilaire, 1803)"
 ]
}

 The dataset includes 539 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023414-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27921984
title: Tabula Sapiens v2

description: Tabula Sapiens is a benchmark, first-draft human cell atlas of over 1.1M cells from 28 organs of 24 normal human subjects. This work is the product of the Tabula Sapiens Consortium. Taking the organs from the same individual controls for genetic background, age, environment, and epigenetic effects, and allows detailed analysis and comparison of cell types that are shared between tissues. Our work creates a detailed portrait of cell types as well as their distribution and variation in gene expression across tissues and within the endothelial, epithelial, stromal and immune compartments.We have built directly on our unique skills, experience, and data infrastructure from Tabula Muris and Tabula Muris Senis to create a high-quality human reference dataset and portal at a 10-fold larger scale from these prior efforts.A critical factor in the Tabula projects is our large collaborative network of PI’s with deep expertise at preparation of diverse organs, enabling all organs from a subject to be successfully processed within a single day. We have built the logistics and infrastructure capable of tracking hundreds of samples and thousands of 384-well plates from tissue through sample prep, library construction and on to sequencing and ultimately computational and expert cell annotation with tight quality control.Tabula Sapiens leverages our network of human tissue experts and a close collaboration with a Donor Network West, a not-for-profit organ procurement organization. We use their experience to balance and assign cell types from each tissue compartment and optimally mix high-quality plate-seq data and high-volume droplet-based data to provide a broad and deep benchmark atlas.With the second version, Tabula Sapiens 2.0, we have built an integrated map of 28 tissues collected across 24 donors. Nine new donors and four new tissues were collected and analyzed together with the original Tabula Sapiens 1.0 dataset. All tissues and organs, with the exception of the respective reproductive organs, were profiled from both male (n=11) and female (n=13) donors. The donor's age ranges from 22 to 74 years old, offering one of the most comprehensive molecular profiles of human tissues across the adult lifespan (7 donors under the age of 40, 11 donors between 40 and 60, and 6 donors over 60 years of age).
DOI: 10.15468/dl.2pfej9
title: Occurrence Download

description: A dataset containing 858 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arapaima gigas (Schinz, 1822)"
 ]
}

 The dataset includes 858 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023416-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7z5bm
title: Occurrence Download

description: A dataset containing 1957 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is one of (Australia, Papua New Guinea, Indonesia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nothofagus Blume"
 ]
}

 The dataset includes 1957 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023418-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntvjmc
title: Occurrence Download

description: A dataset containing 1667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-46.70811 -23.09279,-46.40056 -23.09279,-46.40056 -22.82473,-46.70811 -22.82473,-46.70811 -23.09279))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1667 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023419-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f75prc
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zalieutes mcgintyi (Fowler, 1952)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 316 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023420-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpstwv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Moscow University Herbarium (MW)",
 "Geometry POLYGON((37.74928 60.3866,37.56116 59.399,42.27968 57.76868,41.39127 56.51481,41.58125 56.33983,41.88621 56.16484,41.89296 55.38079,44.96185 57.06608,46.57003 56.00972,47.31105 56.16739,47.72371 57.61186,45.60783 57.44162,44.9755 58.39011,46.44689 59.07109,44.46477 60.38439,37.74928 60.3866))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Barbarea vulgaris (L.) W.T.Aiton",
 "Year 1215-2024"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023424-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y3afj
title: Occurrence Download

description: A dataset containing 16107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apogon phenax Böhlke & Randall, 1968",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16107 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023425-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ptfm3
title: Occurrence Download

description: A dataset containing 23512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus falciformis (Müller & Henle, 1839)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23512 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023426-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26125678
title: Feasibility and effectiveness of extended-release buprenorphine (XR-BUP) among correctional populations: a systematic review

description: <i>Background:</i> Medications for opioid use disorder (MOUD) reduce risks for overdose among correctional populations. Among other barriers, daily dosing requirements hinder treatment continuity post-release. Extended-release buprenorphine (XR-BUP) may therefore be beneficial. However, limited evidence exists. <i>Objectives:</i> To conduct a systematic review examining the feasibility and effectiveness of XR-BUP among correctional populations. <i>Methods:</i> Searches were carried out in Pubmed, Embase, and PsychINFO in October 2023. Ten studies reporting on feasibility or effectiveness of XR-BUP were included, representing <i>n</i> = 819 total individuals (81.6% male). Data were extracted and narratively reported under the following main outcomes: 1) Feasibility; 2) Effectiveness; and 3) Barriers and Facilitators. <i>Results:</i> Studies were heterogeneous. Correctional populations were two times readier to try XR-BUP compared to non-correctional populations. XR-BUP was feasible and safe, with no diversion, overdoses, or deaths; several negative side effects were reported. Compared to other MOUD, XR-BUP significantly reduced drug use, resulted in similar or higher treatment retention rates, fewer re-incarcerations, and was cost-beneficial, with a lower overall monthly/yearly cost. Barriers to XR-BUP, such as side effects and a fear of needles, as well as facilitators, such as a lowered risk of opioid relapse, were also identified. <i>Conclusion:</i> XR-BUP appears to be a feasible and potentially effective alternative treatment option for correctional populations with OUD. XR-BUP may reduce community release-related risks, such as opioid use and overdose risk, as well as barriers to treatment retention. Efforts to expand access to and uptake of XR-BUP among correctional populations are warranted.
DOI: 10.6084/m9.figshare.27105924.v1
title: Exploring the impact of inflammatory cytokines on alcoholic liver disease: a Mendelian randomization study with bioinformatics insights into potential biological mechanisms

description: <i>Background:</i> Alcoholic liver disease (ALD) significantly contributes to global morbidity and mortality. The role of inflammatory cytokines in alcohol-induced liver injury is pivotal yet not fully elucidated. <i>Objectives:</i> To establish a causal link between inflammatory cytokines and ALD using a Mendelian Randomization (MR) framework. <i>Methods:</i> This MR study utilized genome-wide significant variants as instrumental variables (IVs) for assessing the relationship between inflammatory cytokines and ALD risk, focusing on individuals of European descent. The approach was supported by comprehensive sensitivity analyses and augmented by bioinformatics tools including differential gene expression, protein-protein interactions (PPI), Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis, and analysis of immune cell infiltration. <i>Results:</i> Our findings reveal that increased levels of stem cell growth factor beta (SCGF-β, beta = 0.141, <i>p</i> = .032) and interleukin-7 (IL-7, beta = 0.311, <i>p</i> = .002) are associated with heightened ALD risk, whereas higher levels of macrophage inflammatory protein-1α (MIP-1α, beta = -0.396, <i>p</i> = .004) and basic fibroblast growth factor (bFGF, beta = -0.628, <i>p</i> = .008) are linked to reduced risk. The sensitivity analyses support these robust causal relationships. Bioinformatics analyses around inflammatory cytokine-associated SNP loci suggest multiple pathways through which cytokines influence ALD. <i>Conclusion:</i> The genetic evidence from this study convincingly demonstrates that certain inflammatory cytokines play directional roles in ALD pathogenesis. These findings provide insights into the complex biological pathways involved and underscore the potential for developing targeted therapies that modulate these inflammatory responses, ultimately improving clinical outcomes for ALD patients.
DOI: 10.6084/m9.figshare.27105924
title: Exploring the impact of inflammatory cytokines on alcoholic liver disease: a Mendelian randomization study with bioinformatics insights into potential biological mechanisms

description: <i>Background:</i> Alcoholic liver disease (ALD) significantly contributes to global morbidity and mortality. The role of inflammatory cytokines in alcohol-induced liver injury is pivotal yet not fully elucidated. <i>Objectives:</i> To establish a causal link between inflammatory cytokines and ALD using a Mendelian Randomization (MR) framework. <i>Methods:</i> This MR study utilized genome-wide significant variants as instrumental variables (IVs) for assessing the relationship between inflammatory cytokines and ALD risk, focusing on individuals of European descent. The approach was supported by comprehensive sensitivity analyses and augmented by bioinformatics tools including differential gene expression, protein-protein interactions (PPI), Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis, and analysis of immune cell infiltration. <i>Results:</i> Our findings reveal that increased levels of stem cell growth factor beta (SCGF-β, beta = 0.141, <i>p</i> = .032) and interleukin-7 (IL-7, beta = 0.311, <i>p</i> = .002) are associated with heightened ALD risk, whereas higher levels of macrophage inflammatory protein-1α (MIP-1α, beta = -0.396, <i>p</i> = .004) and basic fibroblast growth factor (bFGF, beta = -0.628, <i>p</i> = .008) are linked to reduced risk. The sensitivity analyses support these robust causal relationships. Bioinformatics analyses around inflammatory cytokine-associated SNP loci suggest multiple pathways through which cytokines influence ALD. <i>Conclusion:</i> The genetic evidence from this study convincingly demonstrates that certain inflammatory cytokines play directional roles in ALD pathogenesis. These findings provide insights into the complex biological pathways involved and underscore the potential for developing targeted therapies that modulate these inflammatory responses, ultimately improving clinical outcomes for ALD patients.
DOI: 10.6084/m9.figshare.26125678.v1
title: Feasibility and effectiveness of extended-release buprenorphine (XR-BUP) among correctional populations: a systematic review

description: <i>Background:</i> Medications for opioid use disorder (MOUD) reduce risks for overdose among correctional populations. Among other barriers, daily dosing requirements hinder treatment continuity post-release. Extended-release buprenorphine (XR-BUP) may therefore be beneficial. However, limited evidence exists. <i>Objectives:</i> To conduct a systematic review examining the feasibility and effectiveness of XR-BUP among correctional populations. <i>Methods:</i> Searches were carried out in Pubmed, Embase, and PsychINFO in October 2023. Ten studies reporting on feasibility or effectiveness of XR-BUP were included, representing <i>n</i> = 819 total individuals (81.6% male). Data were extracted and narratively reported under the following main outcomes: 1) Feasibility; 2) Effectiveness; and 3) Barriers and Facilitators. <i>Results:</i> Studies were heterogeneous. Correctional populations were two times readier to try XR-BUP compared to non-correctional populations. XR-BUP was feasible and safe, with no diversion, overdoses, or deaths; several negative side effects were reported. Compared to other MOUD, XR-BUP significantly reduced drug use, resulted in similar or higher treatment retention rates, fewer re-incarcerations, and was cost-beneficial, with a lower overall monthly/yearly cost. Barriers to XR-BUP, such as side effects and a fear of needles, as well as facilitators, such as a lowered risk of opioid relapse, were also identified. <i>Conclusion:</i> XR-BUP appears to be a feasible and potentially effective alternative treatment option for correctional populations with OUD. XR-BUP may reduce community release-related risks, such as opioid use and overdose risk, as well as barriers to treatment retention. Efforts to expand access to and uptake of XR-BUP among correctional populations are warranted.
DOI: 10.6084/m9.figshare.27138755
title: High lifetime prevalence of regular nitrous oxide use in French medical students

description: <i>Background:</i> Although nitrous oxide (N₂O) is increasingly misused recreationally, its use and risks among medical students who have professional access to it are rarely explored. <i>Objectives:</i> To investigate the recreational use of N₂O among medical students in Paris Region (France). <i>Methods:</i> This cross-sectional study used an online questionnaire distributed in 2022 through social networks, to all medical students (undergraduate student from the 2nd year of medical studies to residents until the end of the residency) from the six medical universities in Paris Region. We collected demographic characteristics, patterns of N₂O consumption, co-consumptions, and N₂O training (academic course or self-training). Factors associated with N₂O consumption and complications were analyzed using multivariable logistic regressions. <i>Results:</i> The questionnaires of 444 students (mean age: 25.9 years (SD = 2.69), 75.5% female, and 63.74% residents) were analyzed. Recreational N₂O consumption was reported by 71.85% of students and 20.50% consumed at least monthly. N₂O consumption was associated with being a resident (versus undergraduate student) (adjusted OR (aOR) = 3.07[1.45–6.72]; <i>p</i> &lt; .01), receiving training on N₂O (aOR) = 3.13[1.84–6.24]; <i>p</i> &lt; .01), and consumption of cannabis (aOR = 18.21[3.47–104.26]; <i>p</i> &lt; .01), ecstasy (aOR = NA, <i>p</i> = .048) and poppers (aOR = 13.9[2.64–77.94]; <i>p</i> &lt; .01). Complications (mainly dizziness, paresthesia and burns) were reported in 8.15% of students consuming N₂O. They were associated with consuming more than 10 balloons per intake (aOR = 6.04[1.32–25.00); <i>p</i> &lt; .01) and inversely associated with receiving training (aOR = 0.35[0.14–0.86]; <i>p</i> = .01). <i>Conclusions:</i> Almost three-quarters of medical students experienced recreational N₂O consumption, particularly with poly-drug use. Given that complications were associated with high consumption and lack of education, risk training and screening for N₂O consumption could be beneficial.
DOI: 10.6084/m9.figshare.27138755.v1
title: High lifetime prevalence of regular nitrous oxide use in French medical students

description: <i>Background:</i> Although nitrous oxide (N₂O) is increasingly misused recreationally, its use and risks among medical students who have professional access to it are rarely explored. <i>Objectives:</i> To investigate the recreational use of N₂O among medical students in Paris Region (France). <i>Methods:</i> This cross-sectional study used an online questionnaire distributed in 2022 through social networks, to all medical students (undergraduate student from the 2nd year of medical studies to residents until the end of the residency) from the six medical universities in Paris Region. We collected demographic characteristics, patterns of N₂O consumption, co-consumptions, and N₂O training (academic course or self-training). Factors associated with N₂O consumption and complications were analyzed using multivariable logistic regressions. <i>Results:</i> The questionnaires of 444 students (mean age: 25.9 years (SD = 2.69), 75.5% female, and 63.74% residents) were analyzed. Recreational N₂O consumption was reported by 71.85% of students and 20.50% consumed at least monthly. N₂O consumption was associated with being a resident (versus undergraduate student) (adjusted OR (aOR) = 3.07[1.45–6.72]; <i>p</i> &lt; .01), receiving training on N₂O (aOR) = 3.13[1.84–6.24]; <i>p</i> &lt; .01), and consumption of cannabis (aOR = 18.21[3.47–104.26]; <i>p</i> &lt; .01), ecstasy (aOR = NA, <i>p</i> = .048) and poppers (aOR = 13.9[2.64–77.94]; <i>p</i> &lt; .01). Complications (mainly dizziness, paresthesia and burns) were reported in 8.15% of students consuming N₂O. They were associated with consuming more than 10 balloons per intake (aOR = 6.04[1.32–25.00); <i>p</i> &lt; .01) and inversely associated with receiving training (aOR = 0.35[0.14–0.86]; <i>p</i> = .01). <i>Conclusions:</i> Almost three-quarters of medical students experienced recreational N₂O consumption, particularly with poly-drug use. Given that complications were associated with high consumption and lack of education, risk training and screening for N₂O consumption could be beneficial.
DOI: 10.15468/dl.exvtrc
title: Occurrence Download

description: A dataset containing 487 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crax globulosa Spix, 1825"
 ]
}

 The dataset includes 487 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023427-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9m2cnp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arapaima gigas Lundberg & Chernoff, 1992"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023428-241126133413365/datasets/export for details.
DOI: 10.15468/dl.p8mkrx
title: Occurrence Download

description: A dataset containing 590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Engyophrys senta Ginsburg, 1933",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 590 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023429-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnm9jv
title: Occurrence Download

description: A dataset containing 2439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cameraria ohridella Deschka & Dimić, 1986",
 "Country is Germany",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 2439 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023430-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.8yk67u71
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (14 records)