cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.86hf6
title: Data from: Multilocus tests of Pleistocene refugia and ancient divergence in a pair of Atlantic Forest antbirds (Myrmeciza)

description: The Atlantic Forest (AF) harbors one of the most diverse vertebrate faunas
 of the world, including 199 endemic species of birds. Understanding the
 evolutionary processes behind such diversity has become the focus of many
 recent, primarily single locus, phylogeographic studies. These studies
 suggest that isolation in forest refugia may have been a major mechanism
 promoting diversification, although there is also support for a role of
 riverine and geotectonic barriers, two sets of hypotheses that can best be
 tested with multilocus data. Here we combined multilocus data (one mtDNA
 marker and eight anonymous nuclear loci) from two species of parapatric
 antbirds, Myrmeciza loricata and M. squamosa, and approximate Bayesian
 computation to determine if isolation in refugia explains current patterns
 of genetic variation, and their status as independent evolutionary units.
 Patterns of population structure, differences in intraspecific levels of
 divergence and coalescent estimates of historical demography fit the
 predictions of a recently proposed model of refuge isolation in which
 climatic stability in the northern AF sustains higher diversity and
 demographic stability than in the southern AF. However a pre-Pleistocene
 divergence associated with their abutting range limits in a region of past
 tectonic activity also suggests a role for rivers or geotectonic barriers.
 Little or no gene flow between these species suggests the development of
 reproductive barriers or competitive exclusion. Our results suggests that
 limited marker sampling in recent AF studies may compromise estimates of
 divergence times and historical demography, and we discuss the effects of
 such sampling on this and other studies.
description: IMa2_datafileIMa2 input file containing ND2 and 8 anonymous markers.Myrmeciza_mtDNA_and_nDNA.txtSTRUCTURE_input_WBA_and_SASTRUCTURE input file containing WBA and SA data.Structure_WBA_and_SA.txt
DOI: 10.5281/zenodo.18374038
title: Circularly Polarized Structural Color Pigments Tunable Across the Full Visible Spectrum

description: Raw data for all figures in the paper "Circularly polarized structural color pigments tunable across the full visible spectrum", accepted for publication in Advanced Optical Materials in January 2026. The article authors are the same as the creators of this data set.
DOI: 10.5281/zenodo.18374039
title: Circularly Polarized Structural Color Pigments Tunable Across the Full Visible Spectrum

description: Raw data for all figures in the paper "Circularly polarized structural color pigments tunable across the full visible spectrum", accepted for publication in Advanced Optical Materials in January 2026. The article authors are the same as the creators of this data set.
DOI: 10.5061/dryad.1096
title: Data from: The biogeography of introgression in the critically endangered African monkey Rungweceubs kipunji

description: In the four years since its original description, the taxonomy of the
 kipunji (Rungwecebus kipunji), a geographically restricted and critically
 endangered African monkey, has been the subject of much debate, and recent
 research suggesting that the first voucher specimen of Rungwecebus has
 baboon mitochondrial DNA has intensified the controversy. We show that
 Rungwecebus from a second region of Tanzania has a distinct mitochondrial
 haplotype that is basal to a clade containing all Papio species and the
 original Rungwecebus voucher, supporting the placement of Rungwecebus as
 the sister taxon of Papio and its status as a separate genus. We suggest
 that the Rungwecebus population in the Southern Highlands has experienced
 geographically localized mitochondrial DNA introgression from Papio, while
 the Ndundulu population retains the true Rungwecebus mitochondrial genome.
description: 12S
 Alignment12S.nexCO1 Alignmentco1.nexCO2 Alignmentco2.nexND4/tRNA-His/tRNA-Ser/tRNA-Leu/ND5 Alignmentnd45.nexCombined Alignmentcombined.nexMrBayes Consensus Treesconsensus_trees.zipCommand Filescommand_files.zipMaximum Likelihood Bootstrapping FilesML_bootstrapping.zipMaximum Parsimony Bootstrapping FilesMP_bootstrapping.zipSH Test TreefilesSH_test_trees.zip
DOI: 10.5061/dryad.h8c10
title: Data from: Predictability as a personality trait: consistent differences in intraindividual behavioral variation

description: Although animal behavior is generally repeatable, most behavioral
 variation apparently occurs within rather than across individuals. With
 the exception of very recent interest in individual behavioral plasticity
 (consistent differences in responsiveness), this within-individual
 variation has been largely ignored despite its importance in the study of
 proximate and ultimate questions about behavior. Here, we repeatedly
 scored the undisturbed activity of 30 adult male mosquitofish across
 multiple observation bouts spanning 132 days ( observations per fish). We
 found that the behavior of some individuals was consistently more
 predictable in a given context than others. Repeatability for this
 “intraindividual variation” (IIV; ) was evident after accounting for
 individual differences in activity trends across days, and activity
 responses due to fine-scale temperature variation (i.e., individual
 plasticity in response to both variables). To our knowledge, this is the
 first evidence that predictability of behavior is a repeatable
 characteristic of individual animals. We suggest that IIV represents an
 important axis of consistent behavioral variation that has previously not
 been formally considered. Finally, individual differences in
 predictability may similarly exist for labile morphological and
 physiological traits but have seemingly not been studied.
description: IIV
 datalocation is room section
 identifier; indiv is individual identity; trial is trial number; time is
 am vs pm; open and pos are variables about spatial position that were not
 considered in the ms; activity is the number of scans with
 movement;Biro and
 Adriaenssens.txt
DOI: 10.5061/dryad.h7v39
title: Data from: Attitudes towards smoking restrictions and tobacco advertisement bans in Georgia

description: BACKGROUND: The level of public support for restrictions on tobacco use is
 an important element in a nation’s response to the need for tobacco
 control. However, no data have been available from Georgia on public
 opinion regarding smoking restrictions in public places, and on bans on
 tobacco advertisement, sponsorship and promotion. METHODS: 1,588
 respondents aged 13-70 were interviewed at home about their level of
 agreement with eight possible smoking restrictions, used to calculate a
 dichotomous scale indicating high versus low level of agreement with
 restrictions. RESULTS: In all demographic segments, and among tobacco
 users, a majority of respondents indicated a high level of agreement with
 restrictions, ranging from a low of 51% in the 13-25 age group to a high
 of 98% in the 56-70 age group. Logistic regression with all demographic
 variables entered showed that agreement with restrictions rose
 significantly with age and was significantly higher among never smokers
 compared to daily smokers. Across all items, the average public support
 for smoking restrictions and tobacco advertisement bans was 84.9%.
 DISCUSSION: This study provides good quality evidence of a high level of
 public support in Georgia for strong smoking restrictions and the total
 ban of tobacco ads and sponsorship, even among daily smokers. CONCLUSION:
 This study demonstrates a methodology for gathering national public
 opinion data to influence policies towards implementation of stronger
 smoking control measures. Therein lies the relevance of this study beyond
 the borders of Georgia.
description: public opinion data on
 tobacco control questions from georgiaSurvey data were
 collected in the field during January and February 2008. SPSS software
 used to create the data file and simulated electronicaly in
 2011-2012.georges_data_31_01_
 13.sav
DOI: 10.5061/dryad.754d0
title: Data from: Non-industry sponsored preclinical studies on statins yield greater efficacy estimates than industry-sponsored studies: a meta-analysis

description: Industry-sponsored clinical drug studies are associated with publication
 of outcomes that favor the sponsor, even when controlling for potential
 bias in the methods used. However, the influence of sponsorship bias has
 not been examined in preclinical animal studies. We performed a
 meta-analysis of preclinical statin studies to determine whether industry
 sponsorship is associated with either increased effect sizes of efficacy
 outcomes and / or risks of bias in a cohort of published preclinical
 statin studies. We searched Medline (January 1966 - April 2012) and
 identified 63 studies evaluating the effects of statins on atherosclerosis
 outcomes in animals. Two coders independently extracted study design
 criteria aimed at reducing bias, results for all relevant outcomes,
 sponsorship source, and investigator financial ties. The I2 statistic was
 used to examine heterogeneity. We calculated the standardized mean
 difference (SMD) for each outcome and pooled data across studies to
 estimate the pooled average SMD using random effects models. In a priori
 subgroup analyses, we assessed statin efficacy by outcome measured,
 sponsorship source, presence or absence of financial conflict information,
 use of an optimal time window for outcome assessment, accounting for all
 animals, inclusion criteria, blinding, and randomization. The effect of
 statins was significantly larger for studies sponsored by non-industry
 sources (-1.99; 95% CI -2.68, -1.31) versus studies sponsored by industry
 (-0.73; 95% CI -1.00, -0.47) (p value &lt; 0.001). Statin efficacy did
 not differ by disclosure of financial conflict information, use of an
 optimal time window for outcome assessment, accounting for all animals,
 inclusion criteria, blinding, and randomization. Possible reasons for the
 differences between non-industry and industry sponsored studies, such as
 selective reporting of outcomes, require further study.
description: Dataset (athersoclerosis
 statins)
DOI: 10.5061/dryad.1030
title: Data from: Quantitative trait transcripts for nicotine resistance in Drosophila melanogaster

description: Although most genetic association studies are performed with the intention
 of detecting nucleotide polymorphisms that are correlated with a complex
 trait, transcript abundance should also be expected to associate with
 diseases or phenotypes. We performed a scan for such quantitative trait
 transcripts in adult female heads of the fruit fly (Drosophila
 melanogaster) that might explain variation for nicotine resistance. The
 strongest association was seen for abundance of ornithine aminotransferase
 transcripts, implicating detoxification and neurotransmitter biosynthesis
 as mediators of the quantitative response to the drug. Subsequently,
 genetic analysis and metabolite profiling confirmed a complex role for
 ornithine and GABA levels in modification of survival time upon chronic
 nicotine exposure. Differences between populations from North Carolina and
 California suggest that the resistance mechanism may be an evolved
 response to environmental exposure.
description: MIAME compliance
 checklistGurgel MIAME
 compliance.docArray
 AnnotationNic array
 annotation.xlsRaw Data for all
 ArraysNic
 raw arrays.xlsMeans Data
 SetGurgel
 LSmeans.xlsDrug
 EffectsDrug
 effect.xlsExpression on
 SurvivalExpression on
 MetabolitesExpression on
 Metabolite.xlsSAS
 CodeSAS
 scripts.docSupplementary Figures
 (2) and Tables (3)GHHDG_Supplementary.doc
DOI: 10.5061/dryad.5sp75
title: Data from: MHC class I expression dependent on bacterial infection and parental factors in whitefish embryos (Salmonidae)

description: Ecological conditions can influence not only the expression of a
 phenotype, but also the heritability of a trait. As such, heritable
 variation for a trait needs to be studied across environments. We have
 investigated how pathogen challenge affects the expression of MHC genes in
 embryos of the lake whitefish Coregonus palaea. In order to experimentally
 separate paternal (i.e. genetic) from maternal and environmental effects,
 and determine whether and how stress affects the heritable variation for
 MHC expression, embryos were produced in full-factorial in vitro
 fertilizations, reared singly, and exposed at 208 degree days (late-eyed
 stage) to either one of two strains of Pseudomonas fluorescens that differ
 in their virulence characteristics (one increased mortality, while both
 delayed hatching time). Gene expression was assessed 48 h postinoculation,
 and virulence effects of the bacterial infection were monitored until
 hatching. We found no evidence of MHC class II expression at this stage of
 development. MHC class I expression was markedly down-regulated in
 reaction to both pseudomonads. While MHC expression could not be linked to
 embryo survival, the less the gene was expressed, the earlier the embryos
 hatched within each treatment group, possibly due to trade-offs between
 immune function and developmental rate or further factors that affect both
 hatching timing and MHC expression. We found significant additive genetic
 variance for MHC class I expression in some treatments. That is, changes
 in pathogen pressures could induce rapid evolution in MHC class I
 expression. However, we found no additive genetic variance in reaction
 norms in our study population.
description: MolEcol gene exp
 dataGene expression of G6PD,
 GAPDH, MHCa of whitefish embryos that had been exposed to one of several
 treatment conditions. "Female" and "Male" give the
 mother and father, respectively.MolEcol Dead and Hatch
 dataEmbryo survival and day
 of hatching. Each line represents one singly reared embryo exposed to one
 of the treatments. "Female" and "Male" give the
 embryo's mother and father, respectively.
DOI: 10.5061/dryad.36p54
title: Data from: Spatial variation buffers temporal fluctuations in early juvenile survival for an endangered Pacific salmon

description: 1. Spatial, phenotypic, and genetic diversity at relatively small scales
 can buffer species against large-scale processes such as climate change
 that tend to synchronize populations and increase temporal variability in
 overall abundance or production. This portfolio effect generally results
 in improved biological and economic outcomes for managed species. Previous
 evidence for the portfolio effect in salmonids has arisen from
 examinations of time series of adult abundance, but we lack evidence of
 spatial buffering of temporal variability in demographic rates such as
 survival of juveniles during their first year of life. 2. We therefore use
 density-dependent population models with multiple random effects to
 represent synchronous (similar among populations) and asynchronous
 (different among populations) temporal variability as well as spatial
 variability in survival. These are fitted to 25 years of survey data for
 breeding adults and surviving juveniles from 15 demographically distinct
 populations of Chinook salmon (Oncorhynchus tshawytscha) within a single
 metapopulation in the Snake River in Idaho, USA. 3. Model selection
 identifies the most support for the model that included both synchronous
 and asynchronous temporal variability, in addition to spatial variability.
 Asynchronous variability (log-SD = 0.55) is approximately equal in
 magnitude to synchronous temporal variability (log-SD = 0.67), but much
 lower than spatial variability (log-SD = 1.11). We also show that the
 pairwise correlation coefficient, a common measure of population
 synchrony, is approximated by the estimated ratio of shared and total
 variance, where both approaches yield a synchrony estimate of 0.59. We
 therefore find evidence for spatial buffering of temporal variability in
 early juvenile survival, although between-population variability that
 persists over time is also large. 4. We conclude that spatial variability
 decreases interannual changes in overall juvenile production, which
 suggests that conservation and restoration of spatial diversity will
 improve population persistence for this metapopulation. However, the exact
 magnitude of spatial buffering depends upon demographic parameters such as
 adult survival that may vary among populations, and is proposed as an area
 of future research using hierarchical life cycle models. We recommend that
 future sampling of this metapopulation employ a repeated-measure sampling
 design to improve estimation of early juvenile carrying capacity.
description: Parr survey data and
 associated spawner densitiesArchive.csvRes09-06Copeland2009 Idaho Natural Production Monitoring and EvaluationThis document describes the sampling design for this data set.
DOI: 10.5061/dryad.kj1f3v4
title: Data from: Biophysical models reveal the relative importance of transporter proteins and impermeant anions in chloride homeostasis

description: Fast synaptic inhibition in the nervous system depends on the
 transmembrane flux of Cl- ions based on the neuronal Cl- driving force.
 Established theories regarding the determinants of Cl- driving force have
 recently been questioned. Here we present biophysical models of Cl-
 homeostasis using the pump-leak model. Using numerical and novel analytic
 solutions, we demonstrate that the Na+/K+-ATPase, ion conductances,
 impermeant anions, electrodiffusion, water fluxes and cation-chloride
 cotransporters (CCCs) play roles in setting the Cl- driving force. Our
 models, together with experimental validation, show that while impermeant
 anions can contribute to setting [Cl-]i in neurons, they have a negligible
 effect on the driving force for Cl- locally and cell-wide. In contrast, we
 demonstrate that CCCs are well-suited for modulating Cl- driving force and
 hence inhibitory signalling in neurons. Our findings reconcile recent
 experimental findings and provide a framework for understanding the
 interplay of different chloride regulatory processes in neurons.
description: furosemide_rawdata_fig3Raw electrophysiological data for data shown in Figure 3. Includes spreadsheet of processed data.electroporation_rawdata_fig5Raw electrophysiological and imaging data for anion electroporation experiments shown in Figure 5. Includes spreadsheet of processed data.
DOI: 10.5061/dryad.6f2j8
title: Data from: Overdominance interacts with linkage to determine the rate of adaptation to a new optimum

description: Overdominance, or a fitness advantage of a heterozygote over both
 homozygotes, can occur commonly with adaptation to a new optimum
 phenotype. We model how such overdominant polymorphisms can reduce the
 evolvability of diploid populations, uncovering a novel form of epistatic
 constraint on adaptation. The fitness load caused by overdominant
 polymorphisms can most readily be ameliorated by evolution at tightly
 linked loci; therefore traits controlled by multiple loosely linked loci
 are predicted to be strongly constrained. The degree of constraint is also
 sensitive to the shape of the relationship between phenotype and fitness,
 and the constraint caused by overdominance can be strong enough to
 overcome the effects of clonal interference on the rate of adaptation for
 a trait. These results point to novel influences on evolvability that are
 specific to diploids and interact with genetic architecture, and they
 predict a source of stochastic variability in eukaryotic evolution
 experiments or cases of rapid evolution in nature.
description: Code and
 AnalysesThis zip contains the C
 code, R scripts, and simulation data files used to make all figures and
 quantitative comparisons.overdominance_dryad_submission.zip
DOI: 10.5061/dryad.26dk2
title: Data from: Termite mounds can increase the robustness of dryland ecosystems to climatic change

description: Self-organized spatial vegetation patterning is widespread and has been
 described using models of scale-dependent feedback between plants and
 water on homogeneous substrates. As rainfall decreases, these models yield
 a characteristic sequence of patterns with increasingly sparse vegetation,
 followed by sudden collapse to desert. Thus, the final, spot-like pattern
 may provide early warning for such catastrophic shifts. In many arid
 ecosystems, however, termite nests impart substrate heterogeneity by
 altering soil properties, thereby enhancing plant growth. We show that
 termite-induced heterogeneity interacts with scale-dependent feedbacks to
 produce vegetation patterns at different spatial grains. Although the
 coarse-grained patterning resembles that created by scale-dependent
 feedback alone, it does not indicate imminent desertification. Rather,
 mound-field landscapes are more robust to aridity, suggesting that
 termites may help stabilize ecosystems under global change.
description: Biomass
 dataPhoto--KLEEC2926KLEEC2926.tifPhoto--KLEEC2949KLEEC2949.tifPhoto--KLEEC2954aKLEEC2954a.tifPhoto--KLEEC2954bKLEEC2954b.tifPhoto--KLEEC3103KLEEC3103.tifPhoto--KLEEC3109KLEEC3109.tifPhoto--KLEEC3591KLEEC3591.tifPhoto--KLEEN2208KLEEN2208.tifPhoto--KLEES3428bKLEES3428b.tifPhoto--KLEES3436KLEES3436.tifPhoto--KLEES3532KLEES3532.tifPhoto--KLEES3543aKLEES3543a.tifPhoto--KLEES3543bKLEES3543b.tifPattern_Fourier_Transform_analysis_KenyaPicturesPatternFTanalysis_KenyaPictures_forArchive_Science.xlsxFourierAnalysisModifiedModel_P_05820modifiedModel-binary06FourierAnalysisModifiedModel_P_06180modifiedModel-binary06FourierAnalysisModifiedModel_P_06540modifiedModel-binary06FourierAnalysisModifiedModel_P_06900modifiedModel-binary06FourierAnalysisModifiedModel_P_07260modifiedModel-binary06FourierAnalysisModifiedModel_P_07620modifiedModel-binary06FourierAnalysisModifiedModel_P_07980modifiedModel-binary06FourierAnalysisModifiedModel_P_08340modifiedModel-binary06FourierAnalysisModifiedModel_P_08700modifiedModel-binary06FourierAnalysisModifiedModel_P_09060modifiedModel-binary06FourierAnalysisModifiedModel_P_09420modifiedModel-binary06FourierAnalysisModifiedModel_P_09780modifiedModel-binary06Black&white--KLEEC2926KLEEC2926BW.tifBlack&white--KLEEC2949BWKLEEC2949BW.tifBlack&white--KLEEC2954aBWKLEEC2954aBW.tifBlack&white--KLEEC2954bBWKLEEC2954bBW.tifBlack&white--KLEEC3103BWKLEEC3103BW.tifBlack&white--KLEEC3109BWKLEEC3109BW.tifBlack&white--KLEEC3591BWKLEEC3591BW.tifBlack&white--KLEEN2208BWKLEEN2208BW.tifBlack&white--KLEES3428bBWKLEES3428bBW.tifBlack&white--KLEES3436BWKLEES3436BW.tifBlack&white--KLEES3443BWKLEES3443BW.tifBlack&white--KLEES3532BWKLEES3532BW.tifBlack&white--KLEES3543aBWKLEES3543aBW.tifBlack&white--KLEES3543bBWKLEES3543bBW.tif