cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12993362
title: Supplementary Material for: SNPs in Sites for DNA Methylation, Transcription Factor Binding, and miRNA Targets Leading to Allele-Specific Gene Expression and Contributing to Complex Disease Risk: A Systematic Review

description: <b><i>Introduction:</i></b> The complex genetic diversity among human populations results from an assortment of factors acting at various sequential levels, including mutations, population migrations, genetic drift, and selection. Although there are a plethora of DNA sequence variations identified through genome-wide association studies (GWAS), the challenge remains to explain the mechanisms underlying interindividual phenotypic disparity accounting for disease susceptibility. Single nucleotide polymorphisms (SNPs) present in the sites for DNA methylation, transcription factor (TF) binding, or miRNA targets can alter the gene expression. The systematic review aimed to evaluate the complex crosstalk among SNPs, miRNAs, DNA methylation, and TFs for complex multifactorial disease risk. <b><i>Methods:</i></b> PubMed and Scopus databases were used from inception until May 15, 2019. Initially, screening of articles involved studies assessing the interaction of SNPs with TFs, DNA methylation, or miRNAs resulting in allele-specific gene expression in complex multifactorial diseases. We also included the studies which provided experimental validation of the interaction of SNPs with each of these factors. The results from various studies on multifactorial diseases were assessed. <b><i>Results:</i></b> A total of 11 articles for SNPs interacting with DNA methylation, 30 articles for SNPs interacting with TFs, and 11 articles for SNPs in miRNA binding sites were selected. The interactions of SNPs with epigenetic factors were found to be implicated in different types of cancers, autoimmune diseases, cardiovascular diseases, diabetes, and asthma. <b><i>Conclusion:</i></b> The systematic review provides evidence for the interplay between genetic and epigenetic risk factors through allele-specific gene expression in various complex multifactorial diseases.
DOI: 10.6084/m9.figshare.12993338
title: Supplementary Material for: Clinical and Molecular Characterization of Fanconi Anemia Patients in Turkey

description: Fanconi anemia (FA) is a rare multigenic chromosomal instability syndrome that predisposes patients to life-threatening bone marrow failure, congenital malformations, and cancer. Functional loss of interstrand cross-link (ICL) DNA repair system is held responsible, though the mechanism is not yet fully understood. The clinical and molecular findings of 20 distinct FA cases, ages ranging from perinatal stage to 32 years, are presented here. Pathogenic variants in <i>FANCA</i> were found responsible in 75%, <i>FANCC</i>, <i>FANCE</i>, <i>FANCJ</i>/<i>BRIP1</i>, <i>FANCL</i> in 5%, and <i>FANCD1</i>/<i>BRCA2</i> and <i>FANCN</i>/<i>PALB2</i> in 2.5% of the subjects. Altogether, 25 different variants in 7 different FA genes, including 10 novel mutations in <i>FANCA</i>, <i>FANCN</i>/<i>PALB2</i>, <i>FANCE,</i> and <i>FANCJ</i>/<i>BRIP1,</i> were disclosed. Two compound heterozygous germline cases were mosaic for one allele, revealing that the incidence of reverse mutations may not be uncommon in FA. Another case with de novo <i>FANCD1/BRCA2</i> and paternally inherited <i>FANCN/PALB2</i> pathogenic alleles at first glance suggested a digenic inheritance, because the presence of a second pathogenic variant in the unexamined regions of <i>FANCD1/BRCA2</i> and <i>FANCN/PALB2</i> were exluded by sequencing and deletion/duplication analysis. A better understanding of the complexity of the FA genotype may provide further access to undiscovered ICL components and apparently dispensable cellular pathways where FA proteins may play important roles.
DOI: 10.6084/m9.figshare.12993338.v1
title: Supplementary Material for: Clinical and Molecular Characterization of Fanconi Anemia Patients in Turkey

description: Fanconi anemia (FA) is a rare multigenic chromosomal instability syndrome that predisposes patients to life-threatening bone marrow failure, congenital malformations, and cancer. Functional loss of interstrand cross-link (ICL) DNA repair system is held responsible, though the mechanism is not yet fully understood. The clinical and molecular findings of 20 distinct FA cases, ages ranging from perinatal stage to 32 years, are presented here. Pathogenic variants in <i>FANCA</i> were found responsible in 75%, <i>FANCC</i>, <i>FANCE</i>, <i>FANCJ</i>/<i>BRIP1</i>, <i>FANCL</i> in 5%, and <i>FANCD1</i>/<i>BRCA2</i> and <i>FANCN</i>/<i>PALB2</i> in 2.5% of the subjects. Altogether, 25 different variants in 7 different FA genes, including 10 novel mutations in <i>FANCA</i>, <i>FANCN</i>/<i>PALB2</i>, <i>FANCE,</i> and <i>FANCJ</i>/<i>BRIP1,</i> were disclosed. Two compound heterozygous germline cases were mosaic for one allele, revealing that the incidence of reverse mutations may not be uncommon in FA. Another case with de novo <i>FANCD1/BRCA2</i> and paternally inherited <i>FANCN/PALB2</i> pathogenic alleles at first glance suggested a digenic inheritance, because the presence of a second pathogenic variant in the unexamined regions of <i>FANCD1/BRCA2</i> and <i>FANCN/PALB2</i> were exluded by sequencing and deletion/duplication analysis. A better understanding of the complexity of the FA genotype may provide further access to undiscovered ICL components and apparently dispensable cellular pathways where FA proteins may play important roles.
DOI: 10.5281/zenodo.4045697
title: PROGRAMS project. PRM workflows from IDEKO S. Coop. on 2020-09 sample 1

description: These data is the PRM workflow elaboration of the ones collected from FIDIA machine tool controller during milling operation.
DOI: 10.5281/zenodo.4045696
title: PROGRAMS project. PRM workflows from IDEKO S. Coop. on 2020-09 sample 1

description: These data is the PRM workflow elaboration of the ones collected from FIDIA machine tool controller during milling operation.
DOI: 10.5281/zenodo.4045705
title: PROGRAMS project. PRM workflows from IDEKO S. Coop. on 2020-09 sample 2

description: These data is the PRM workflow elaboration of the ones collected from FIDIA machine tool controller during milling operation.
DOI: 10.5281/zenodo.4045704
title: PROGRAMS project. PRM workflows from IDEKO S. Coop. on 2020-09 sample 2

description: These data is the PRM workflow elaboration of the ones collected from FIDIA machine tool controller during milling operation.
DOI: 10.5281/zenodo.4045709
title: PROGRAMS project. PRM workflows from IDEKO S. Coop. on 2020-09 sample 3

description: These data is the PRM workflow elaboration of the ones collected from FIDIA machine tool controller during milling operation.
DOI: 10.5281/zenodo.4045708
title: PROGRAMS project. PRM workflows from IDEKO S. Coop. on 2020-09 sample 3

description: These data is the PRM workflow elaboration of the ones collected from FIDIA machine tool controller during milling operation.
DOI: 10.25375/uct.11790978.v1
title: Hair_FTIR_001

description: Data set associated with hydrogen bond cross-linkers in curly hair. Wet and dry tests.
DOI: 10.5255/ukda-sn-6903-1
title: Quarterly Labour Force Survey, January - March, 2011: Special Licence Access
DOI: 10.5255/ukda-sn-6904-1
title: Quarterly Labour Force Survey, April - June, 2011: Special Licence Access
DOI: 10.5255/ukda-sn-6905-1
title: Quarterly Labour Force Survey, July - September, 2011: Special Licence Access
DOI: 10.15161/oar.it/30719
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5285/a7304d52-9860-4aed-e053-6c86abc0ab5a
title: Historical sea level observations from Santander, Spain (1876-1928).

description: A set of historical tide gauge sea level records from Santander (Northern Spain) have been recovered from logbooks stored at the Spanish National Geographical Institute (IGN). Sea level measurements have been digitised, quality-controlled and merged into a consistent sea level time series. Vertical references among instruments benchmarks have been derived from high precision vertical levelling surveys. The observations were recorded as daily averages and are from three different instruments in two locations in Santander (Spain). The historical sea level record in Santander consists of a daily time series spanning the period 1876-1928 and it is further connected to the modern tide gauge station nearby, ensuring datum continuity up to the present. The data from Santander comes from a floating gauge and then syphon gauges. This scarcity of long-term sea-level observations, as well as their uneven geographical distribution is a major challenge for climate studies that address, for example, the quantification of mean sea-level rise at centennial time scales, the accurate assessment of sea-level acceleration or the long-term changes in sea-level extremes that are vital for coastal risk assessments. This dataset represents an additional effort of sea-level data archaeology and aims at preserving the historical scientific heritage that has been up to now stored in old archives in non-electronic format. The research was partially funded by the Spanish Ministry of Science, Innovation and Universities. A further two series were rescued from Alicante under the same initiative. These data are distributed under a CC BY 4.0 license (creativecommons.org/licenses/by/4.0/).
DOI: 10.25625/ozgbwe/fshkan
title: Subject.docx

description: RMT and SI1 mV data to paper
DOI: 10.25625/ozgbwe/vtatsg
title: Raw MEP values.xls

description: Raw MEP data to paper
DOI: 10.25625/ozgbwe
title: Raw MEP data

description: Raw MEP data to paper: Isometric agonist and antagonist muscle activation interacts differently with transcranial alternating current stimulation aftereffects at different intensities Shorafa Y. 1, Halawa I. 1, 2, Hewitt M. 1, Antal A.1 and Paulus W1
DOI: 10.5281/zenodo.4044451
title: Realistic LIGO/Virgo/KAGRA observing scenarios based on O3 public alerts

description: Efforts to search for electromagnetic counterparts of gravitational-wave sources have intensified dramatically since the 2017 discovery a binary neutron star merger with an associated gamma-ray burst, optical/infrared kilonova, and panchromatic afterglow. Now, one LIGO/Virgo observing run later, there has not yet been a second secure identification of electromagnetic counterpart. This is not unexpected, and can be mostly explained by the localization uncertainty of events from LIGO and Virgo’s most recent, third observing run (“O3”). The official LIGO/Virgo observing scenarios fail to account for improvements in data analysis that allow LIGO/Virgo to detect fainter and hence worse-localized gravitational- wave sources, which increases the number of detections while decreasing the proportion of well-localized “gold-plated” events. Realistic forecasting of gravitational-wave localization performance is paramount because electromagnetic counterpart searches require large commitments of telescope time. We present simulations of the next several LIGO/Virgo/KAGRA observing runs that are based on the statistics of O3 public alerts.
DOI: 10.17632/fp8rjzws6j.1
title: Data for: Correlates of Stalking in Canada: A Model of Social Support and Comorbidity

description: Canadian General Survey, Cycle 23
DOI: 10.5281/zenodo.3765714
title: Predicting the presence and titer of rabies virus neutralizing antibodies from low-volume serum samples in low-containment facilities

description: Python Script. Cell count outputs were converted into a standardized spreadsheet using a Python version 3.7.2 script Codes for binomial and lognormal model code to obtain the images from the model results data to run the models, data result from the models
description: {"references": ["Meza DK, Broos A, Becker DJ, et al. Predicting the presence and titre of rabies virus-neutralizing antibodies from low-volume serum samples in low- containment facilities. Transbound. Emerg. Dis. 2020;00:1\u201313"]}
DOI: 10.5281/zenodo.3765713
title: Predicting the presence and titer of rabies virus neutralizing antibodies from low-volume serum samples in low-containment facilities

description: Python Script. Cell count outputs were converted into a standardized spreadsheet using a Python version 3.7.2 script Codes for binomial and lognormal model code to obtain the images from the model results data to run the models, data result from the models
description: {"references": ["Meza DK, Broos A, Becker DJ, et al. Predicting the presence and titre of rabies virus-neutralizing antibodies from low-volume serum samples in low- containment facilities. Transbound. Emerg. Dis. 2020;00:1\u201313"]}
DOI: 10.5281/zenodo.4045663
title: CTD dataset of the Po river (Italy) during one ebb and flood phase on 26 July 2017

description: CTD dataset: temperature and salinity profiles acquired in the water<br> column with CTD probes (Ocean Seven 316Plus and 304, Idronaut srl, 20 Hz<br> and 8 Hz sampling rate, respectively), starting from the Po river mouth<br> and navigating upstream along the river talweg 10-18 km depending on the<br> river branch and in any case detecting a complete freshwater column.<br> Two sets of samplings were conducted on the 26th July 2017 during a spring<br> tide cycle, both starting at the slack tide and following the ebb and<br> flood tidal phase for almost two hours. The CTD casts location was decided<br> a priori based on the experience of previous campaigns, trying to<br> match the largest number of casts within an appropriate time interval to<br> detect the freshwater. During the ebb tide, when the salt wedge was<br> shorter, some additional casts where conducted to increase the<br> longitudinal resolution of the campaign. The CTD raw data were extracted<br> along the water column every 10 cm. Part of this dataset is used for<br> validation purposed in the paper Bellafiore et al., submitted to Journal<br> of Geophysical Research - Oceans, title "Saltwater intrusion in a<br> Mediterranean delta under a changing climate".
DOI: 10.5281/zenodo.4045662
title: CTD dataset of the Po river (Italy) during one ebb and flood phase on 26 July 2017

description: CTD dataset: temperature and salinity profiles acquired in the water<br> column with CTD probes (Ocean Seven 316Plus and 304, Idronaut srl, 20 Hz<br> and 8 Hz sampling rate, respectively), starting from the Po river mouth<br> and navigating upstream along the river talweg 10-18 km depending on the<br> river branch and in any case detecting a complete freshwater column.<br> Two sets of samplings were conducted on the 26th July 2017 during a spring<br> tide cycle, both starting at the slack tide and following the ebb and<br> flood tidal phase for almost two hours. The CTD casts location was decided<br> a priori based on the experience of previous campaigns, trying to<br> match the largest number of casts within an appropriate time interval to<br> detect the freshwater. During the ebb tide, when the salt wedge was<br> shorter, some additional casts where conducted to increase the<br> longitudinal resolution of the campaign. The CTD raw data were extracted<br> along the water column every 10 cm. Part of this dataset is used for<br> validation purposed in the paper Bellafiore et al., submitted to Journal<br> of Geophysical Research - Oceans, title "Saltwater intrusion in a<br> Mediterranean delta under a changing climate".
DOI: 10.6084/m9.figshare.12992477
title: R0229_20181025a_videos

description: Rat 0229, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12992237
title: R0230_20181015a_videos

description: Rat 0230, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12992237.v1
title: R0230_20181015a_videos

description: Rat 0230, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5517/ccdc.csd.cc2181zc
title: CCDC 1884582: Experimental Crystal Structure Determination

description: Related Article: T.A. Nibila, T.K. Shameera Ahamed, P.P. Soufeena, K. Muraleedharan, Pradeepan Periyat, K.K. Aravindakshan|2020|Results in Chemistry|2|100062|doi:10.1016/j.rechem.2020.100062
DOI: 10.17632/fp8rjzws6j.2
title: Data for: Correlates of Stalking in Canada: A Model of Social Support and Comorbidity

description: Canadian General Survey, Cycle 23
DOI: 10.5281/zenodo.4045875
title: Raw data for arXiv:2009.09702

description: Raw datasets for preprint arXiv:2009.09702 "On the verge of life: Distribution of nucleotide sequences in viral RNAs"
DOI: 10.5281/zenodo.4045874
title: Raw data for arXiv:2009.09702

description: Raw datasets for preprint arXiv:2009.09702 "On the verge of life: Distribution of nucleotide sequences in viral RNAs"
DOI: 10.17633/rd.brunel.11638323
title: Microchip Manufacturing Plant Production Floor Optimization (MMPPFO) problem dataset

description: Optimization problem starts with initial wafer-lot production schedule and new die request. To solve the problem, wafer-lot schedule has to be altered to support all demand. Schedule can be altered by changing individual wafer-lot schedule in three major ways: pull-in, push-out, and offload. Pull-in wafer-lot means to produce the wafer-lot earlier. Push-out means to produce the wafer-lot later. Offload means to produce the wafer-lot in another fab. All wafer-lot schedule alterations must comply with existing constraints. Wafer production is a complex process in a microchip manufacturing plant. Each fab can produce limited quantity of wafers in selected time window. The time window is one Week. With known or predicted future die demand it is possible to create wafer-lot production schedule that maximizes the efficiency of fabs and supports all the requested demand. Moreover, it is desired to support this new demand while having the lowest number of changes to the schedule possible.The dataset has been heuristically generated using the preservation of dynamics of real data.<br><br> <br>
DOI: 10.17633/rd.brunel.11638323.v1
title: Microchip Manufacturing Plant Production Floor Optimization (MMPPFO) problem dataset

description: Optimization problem starts with initial wafer-lot production schedule and new die request. To solve the problem, wafer-lot schedule has to be altered to support all demand. Schedule can be altered by changing individual wafer-lot schedule in three major ways: pull-in, push-out, and offload. Pull-in wafer-lot means to produce the wafer-lot earlier. Push-out means to produce the wafer-lot later. Offload means to produce the wafer-lot in another fab. All wafer-lot schedule alterations must comply with existing constraints. Wafer production is a complex process in a microchip manufacturing plant. Each fab can produce limited quantity of wafers in selected time window. The time window is one Week. With known or predicted future die demand it is possible to create wafer-lot production schedule that maximizes the efficiency of fabs and supports all the requested demand. Moreover, it is desired to support this new demand while having the lowest number of changes to the schedule possible.The dataset has been heuristically generated using the preservation of dynamics of real data.<br><br> <br>
DOI: 10.5061/dryad.54nq349m/5
title: GeoAgyrtodes

description: Agyrtodes labralis (Leiodidae) BEAST profile incorporating ancestral state reconstruction with BSSVS.
DOI: 10.5061/dryad.54nq349m/6
title: GeoBrachynopus

description: Brachynopus scutellaris (Staphylinidae) BEAST profile incorporating ancestral state reconstruction with BSSVS.
DOI: 10.5061/dryad.54nq349m/7
title: GeoEpistranus

description: Epistranus lawsoni (Zopheridae) BEAST profile incorporating ancestral state reconstruction with BSSVS.
DOI: 10.5061/dryad.54nq349m/8
title: GeoHisparonia

description: Hisparonia hystrix (Nitidulidae) BEAST profile incorporating ancestral state reconstruction with BSSVS.
DOI: 10.5061/dryad.54nq349m/1
title: Agyrtodes_maxent

description: Agyrtodes labralis (Leiodidae) localities used for ecological niche modeling in Maxent. Localities are in New Zealand Map Grid (NZMG) format.
DOI: 10.5061/dryad.54nq349m/2
title: Brachynopus_maxent

description: Brachynopus scutellaris (Staphylinidae) localities used for ecological niche modeling in Maxent. Localities are in New Zealand Map Grid (NZMG) format.
DOI: 10.5061/dryad.54nq349m/3
title: Epistranus_maxent

description: Epistranus lawsoni (Zopheridae) localities used for ecological niche modeling in Maxent. Localities are in New Zealand Map Grid (NZMG) format.
DOI: 10.6084/m9.figshare.12083994
title: Content Management Systems Among Swedish Museums

description: This dataset contains links to over 350 Swedish museum websites along with information about which content management system each website is powered by. If the CMS could not be identified the backend framework or programming language have noted instead (if possible).<br><b>Inclusion Notes</b><br><br>Museum using central Content Management Systems (such as hembygd.se or municipality websites) are excluded from this dataset. <br><br>When multiple museums shares website only one instance of the website is represented in the dataset.<br>Only the main museum website is represented. Separate websites for collections, projects, locations, or similar are excluded.<br><b>Creation Notes</b><br>The dataset were semiautomatically created by the author on the date of publication.<br><b></b>
DOI: 10.5061/dryad.54nq349m/4
title: Hisparonia_maxent

description: Hisparonia hystrix (Nitidulidae) localities used for ecological niche modeling in Maxent. Localities are in New Zealand Map Grid (NZMG) format.
DOI: 10.6084/m9.figshare.12083994.v1
title: Content Management System's Among Swedish Museums

description: This dataset contains links to over 350 Swedish museum websites along with information about which content management system each website is powered by. If the CMS could not be identified the backend framework or programming language have noted instead (if possible).<br><b>Inclusion Notes</b><br><br>Museum using central Content Management Systems (such as hembygd.se or municipality websites) are excluded from this dataset. <br><br>When multiple museums shares website only one instance of the website is represented in the dataset.<br>Only the main museum website is represented. Separate websites for collections, projects, locations, or similar are excluded.<br><b>Creation Notes</b><br>The dataset were semiautomatically created by the author on the date of publication.<br><b></b>
DOI: 10.17632/fp8rjzws6j.3
title: Data for: Correlates of Stalking in Canada: A Model of Social Support and Comorbidity

description: Canadian General Survey, Cycle 23
DOI: 10.21942/uva.12981746
title: Data dispersal vs cannibalism publication

description: This is the dataset belonging to the publication "<b>Males cannibalise and females disperse in the predatory mite <i>Phytoseiulus persimilis</i></b>" by Alexandra Revynthi, Kaya van Pol, Arne Janssen and Martijn Egas, in Experimental and Applied Acarology.
DOI: 10.21942/uva.12981746.v1
title: Data dispersal vs cannibalism publication

description: This is the dataset belonging to the publication "<b>Males cannibalise and females disperse in the predatory mite <i>Phytoseiulus persimilis</i></b>" by Alexandra Revynthi, Kaya van Pol, Arne Janssen and Martijn Egas, in Experimental and Applied Acarology.