cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12568814.v1
title: Additional file 1 of Alternative splicing is highly variable among Daphnia pulex lineages in response to acute copper exposure

description: Additional file 1: Table S1. Quality and mapping information for the 21 Daphnia pulex RNA-sequencing libraries against both the JGI V1.0 2011 assembly from Ensembl (as reported in Table S3 in Chain et al. 2019 [53]) and also against the newer Daphnia PA42 3.0 reference assembly from Ye et al. 2017 [42]. Sample names consist of tank number (T), individual ID number, and clone (D, K or S). Samples were run in one of two lanes, and average quality (Q) is presented as PHRED scores. The % mapped reads and number of expressed genes are shown for each of the reference assemblies, as well as the alternative spliced genes against the newer reference. Table S2. Differentially expressed genes in response to acute Cu exposure when comparing all 6 controls with all 15 Cu exposed samples. Table S3. Summary of blast analysis comparing the differentially expressed (DE) genes identified by Chain et al. [53] with the genes from the newer Daphnia PA42 3.0 reference assembly from Ye et al. 2017 [42]. Table S4. Comparison of the DE genes identified by Chain et al. 2019 [53] and the genes from the newer Daphnia PA42 3.0 reference assembly from Ye et al. 2017 [42] using BLASTn. Table S5. Differentially spliced genes in response to acute Cu exposure when comparing all 6 controls with all 15 Cu exposed samples. Δ|Ψ| is the difference in the exon/intron inclusion level between the two conditions. Table S6. Differentially expressed genes in response to acute Cu exposure from clone specific analyses. Table S7. Genes commonly differentially expressed from global analysis and clone specific analyses. Table S8. Differentially spliced genes in response to acute Cu exposure in Clone D. Table S9. Differentially spliced genes in response to acute Cu exposure in Clone S. Table S10. Differentially spliced genes in response to acute Cu exposure in Clone K. Table S11. Gene Ontology enrichment analysis of the DE genes from the global analysis combining all 6 controls with all 15 Cu exposed samples (BP: biological process, MF: molecular function). Table S12. Gene Ontology enrichment analysis of the DE genes from clone specific analyses (BP: biological process, MF: molecular function). Table S13. Gene Ontology enrichment analysis of the DS genes from the global analysis combining all 6 controls with all 15 Cu exposed samples (BP: biological process, MF: molecular function). Table S14. Gene Ontology enrichment analysis of the DS genes from clone specific analyses (BP: biological process, MF: molecular function).
DOI: 10.3535/cq5-clw-hbq
title: Propora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bhy-yzk-jsd
title: Trypanites

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ykv-ftm-pak
title: Eunicida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20361714.v1
title: Contigs

description: De-novo assembled contigs from the dataset. Files for all contigs (pooled from all samples) as well as only viral rdrp-containing contigs and only vlt rdrp-containing contigs
DOI: 10.3535/6yy-4gk-50y
title: Heliolitina

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9qf-0vw-chz
title: Propora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12690152.v1
title: GIS based watershed’s morphometric parameters analysis for sustainable hydrological modeling: A case study of Barind region of Bangladesh

description: Here is attached DEM image and analyzed data.
DOI: 10.6084/m9.figshare.3464255.v1
title: Video and Results on Behavoural analysis

description: This folder contains the ONI file for 10 sequences used in the Behavioural analysis test and the annotation excel files for the whole 13 sequences.For missing file (not here for space limitations) donwload them at http://imagelab.ing.unimore.it/imagelab/page.asp?IdPage=7
DOI: 10.6084/m9.figshare.8969132.v1
title: Additional file 13: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S8. Overlapped VRs and ORFs. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_8.xlsx (XLSX 58 kb)
DOI: 10.3535/3sr-fr1-0v7
title: Propora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yfb-vbx-6ms
title: †Xanioprion Szankawski & Wrona, 1973

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20134091.v1
title: Charite_01/2021_3T

description: Multiple structural sequences scanned from my brain with a focus on subcortical structures (total ~3.5 scan hours with various anatomical sequences acquired in a single session).
DOI: 10.6084/m9.figshare.21836211.v6
title: Supplemental Tables

description: Supplemental tables describing the results in our study.07/27/2023: Tables have been updated in response to peer-reviews.10/02/2023: Tables have been updated to improve formatting and readability for final submission. Results did not change since the last revision. Table S10 have also been added as a supplement to Figure 1F.02/02/2023: Tables have been re-named and re-ordered to match publication. The previous datasets 8 and 9 are now "Extra_Datasets".Dataset 1: Subject InfoDataset 2: Sample InfoDataset 3: scRNA metadataDataset 4: scRNA DE genesDataset 5: PPC DeconvolutionDataset 6: PCA and pseudotime analysis of bulk RNA-seqDataset 7: Lead eQTLsDataset 8: Correlation between eQTL effect size and TF binding affinityDataset 9: Colocalization between PPC and adultDataset 10: eQTL annotationsDataset 11: eQTL modulesDataset 12: Chromatin state enrichmentsDataset 13: GWAS colocalizationDataset 14: 99% Credible Sets for iPSC-PPC eQTLs associated with GWASDataset 15: LD analysis with non-pancreatic GTEx tissuesExtra Dataset 16: Fine-mapped PPC eQTLs (PP &gt; 1%)Extra Dataset 17: deltaSVM TF Binding Prediction
DOI: 10.3535/5v9-fa4-wy8
title: Eunicida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cdn-81e-vqk
title: Eunicida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12213320.v1
title: A global analysis of anthropogenic development of marine turtle nesting beaches

description: Raw dataset for "Biddiscombe et al. (In Review April 2020) A global analysis of anthropogenic development of marine turtle nesting beaches. Remote Sensing 757969".<br>The file is a .csv file that details 16,009 survey points at which hard anthropogenic coastal development was scored into five bins (0, 25, 50, 75 and 100% coverage), and marine turtle nesting abundance and species data appended.
DOI: 10.6084/m9.figshare.3553962.v1
title: Appendix C. Supplementary results: herbivore assemblage analyses.

description: Supplementary results: herbivore assemblage analyses.
DOI: 10.3535/828-3d7-k5c
title: †Mochtyella

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gl5-wsv-21q
title: †Lunoprionella

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14994993.v1
title: Subduction Polarity Reversal Triggered by Oceanic Plateau: Implications for Induced Subduction Initiation

description: input files and source code of this study
DOI: 10.6084/m9.figshare.19236162.v1
title: Pathogenicity of endophytic fungi on corn plants

description: The data represents the pathogenic effects of endophytic fungi on corn plants.
DOI: 10.3535/b59-r2j-3pf
title: Heliolitina

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nvb-gty-xlb
title: †Xanioprion Szankawski & Wrona, 1973

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1035093.v1
title: Output data files for simulation: top_hat_cg_supg

description: Output data files for simulation: top_hat_cg_supg
DOI: 10.3535/ape-er4-n1p
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rm6-xrw-ye4
title: Eunicida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21946421.v1
title: Raw_acceleration_data.xlsx

description: The file contains raw data for acceleration analysis in a paper entitled ' Field Testing of Railway Embankment Dynamics During Train Passage.'
DOI: 10.3535/4kj-tcp-6yl
title: Spinachitina fragilis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y2n-skz-ppx
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hal-fdm-xfx
title: Distomodus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vdj-cv0-6v4
title: Rexroadus cf. kentuckyensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24954129.v1
title: Short-term effects of clearing restoration on the relationship of plant and moth communities

description: Dataset
DOI: 10.3535/cdt-7ea-mj0
title: Decoriconus costulatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x99-24s-3j5
title: Kockelella manitoulinensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20363694.v1
title: Data set 4: Comparison of the present extrapolated mass excess values with new measurements and AME12 extrapolations.

description: Data set 4: Comparison of the present extrapolated mass excess values with new measurements and AME12 extrapolations.
DOI: 10.6084/m9.figshare.4212096.v2
title: Implications of Simulations on Computational Reality.docx

description: Implications of Simulations on Realityv002.docx working paperAdded Computational Irreducibility and another thought experiment<br>Need to include work on Ettore Majorana unpublished work helped understand Scaffolding: <br>http://dinamico2.unibg.it/recami/erasmo%20docs/SomeRecentPubsOnHistoryOfPhysics/EttoreMajorana/volumettiInEngl.pdf<br>The problem with the scaffolding is it must be built on something that is not understood or unknown.The fabric of space time is not simply flat unless its lays on somethingThe fundamental glue that holds the known universe together. <br>
DOI: 10.3535/8j8-p6v-gvd
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nzt-lt2-jcx
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17035814.v1
title: tsvar_wind495hours_1000samples_trimmed.pkl

description: Results of 1000 samples of wind time series variation using 495 hour dispatch. The optimal system dispatch results are removed to reduce the file size.<br>This is a Python pickle file that can be read in as a Pandas dataframe.
DOI: 10.6084/m9.figshare.28636109.v3
title: Towards More Dependable Specifications: An Empirical Study Exploring the Synergy of Traditional and LLM-Based Repair Approaches

description: Declarative specification languages like Alloy are critical for modeling and verifying complex software systems, yet repairing these specifications remains a significant challenge for ensuring software dependability. This study conducts the first comprehensive empirical evaluation comparing traditional systematic repair techniques with emerging Large Language Model (LLM)-based approaches across two established benchmarks, analyzing over 1,900 Alloy specifications.By systematically analyzing repair success rates, ground truth similarity, and repair generation strategies, we reveal nuanced performance characteristics of different repair methodologies. Our findings demonstrate that while traditional tools excel in systematic fault localization and achieving high ground truth similarity, LLM-based techniques—particularly multi-round prompting approaches—offer unique capabilities in addressing complex specification errors, with some hybrid approaches achieving repair rates of up to 85.5\%.Critically, we show that integrating traditional fault localization techniques with LLM-based repair strategies can significantly enhance overall repair effectiveness and specification dependability. This research provides a large-scale empirical evaluation of how various Alloy repair techniques work in synergy, offering valuable insights that chart a promising path for future automated specification repair approaches and contribute to the development of more reliable and secure software systems.
DOI: 10.3535/c4r-p1q-1xd
title: Rexroadus cf. kentuckyensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wqh-qv1-5dw
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11994627.v1
title: QMDiab.zip

description: Summary statics for genetic association with RNA editing level in QMDiab dataset
DOI: 10.3535/b5h-819-t37
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n59-29a-qlt
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15147453.v2
title: Supplemental Table S3

description: Supplemental material for JDS.2021-2059, entitled Effect of oral administration of timothy hay and psyllium on the growth performance and fecal microbiota of pre-weaned calves
DOI: 10.6084/m9.figshare.28400843.v5
title: CTO-DO Raw Data

description: This data is collected by a Seabird SBE-37 Conductivity, Temperature, Dissolved-Oxygen instrument attached to the JASCO ALTO ocean bottom lander.The AEON network concentrates all observation assets in the Gulf of Maine and totals 5 observation nodes. Node locations are determined based on an in-depth analysis of current regional assets and collaborations, bathymetry and associated sound propagation models, location historical and predicted oceanographic features, and ecosystem relevance.
DOI: 10.3535/2fm-vwp-pjv
title: Ozarkodina oldhamensis s.l.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d4q-ev3-sfz
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25673658.v5
title: Examining the Impact of Bias Mitigation Algorithms on the Sustainability of ML-enabled Systems

description: This replication package contains the raw data, scripts, and necessary materials to reproduce the research study titled "<b>Examining the Impact of Bias Mitigation Algorithms on the Sustainability of ML-enabled Systems</b>". The package is organized into several directories, each containing specific types of files such as datasets, scripts, measurements, and analysis notebooks.
DOI: 10.6084/m9.figshare.26893618.v1
title: Channel gain data for multi-cell NOMA system

description: Channel gain data are generated in simulations to be used for calculation of the energy efficiency.
DOI: 10.3535/1zx-k9g-a0s
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wg8-ejd-9vr
title: Gamachignathus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22921961.v1
title: High-bandwidth Perovskite Photonic Sources on Silicon

description: This is supplementery data for the article
DOI: 10.6084/m9.figshare.28138556.v1
title: S1_Data_240105.xlsx.xlsx

description: Differences in survival and severe anatomical injuries among standard and K-car vehicle occupants
DOI: 10.6084/m9.figshare.6143720.v1
title: axe-tutorial.tar

description: This is the data for the axe tutorial<br>
DOI: 10.17632/d938kgdsym
title: Complete Raw Data

description: Complete raw data for Figures 1-7 and S1-S7 of Cheng et al., 2022.
DOI: 10.3535/p2y-da2-64l
title: Gamachignathus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pnw-gb7-4x6
title: Ozarkodina oldhamensis s.l.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3694360_d3.v1
title: Additional file 4: Table S2 of Evolution of toll-like receptors in the context of terrestrial ungulates and cetaceans diversification

description: Mapping of significant positive selection sites that are concordant between M8 and SLR to key TLR domains and motifs. An excel file containing functionally important sites based on M8 and SLR predictions and showing correspondence of those sites with domain structure and LRR motifs of TLRs studied. (XLSX 10 kb)
DOI: 10.3535/7bv-86x-k9e
title: Kockelella manitoulinensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26831356.v1
title: Data file 1

description: Sequence statistics of <i>C. acnes</i> CN6
DOI: 10.3535/1jd-la5-9ae
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gp5-2kd-vx0
title: Rexroadus cf. kentuckyensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19729714.v1
title: S4_GDELT data

description: GDELT data used in the analysis
DOI: 10.6084/m9.figshare.21089560.v2
title: A Global Typical Meteorological Year Database on ERA5 Dataset - DeST format

description: A global typical meteorological year (TMY) database covers 38,947 stations worldwide. Each typical meteorological year data file includes dry-bulb temperature (°C) and absolute humidity (g/kg air), dew point (°C), direct normal irradiance (W/m2), diffuse horizontal irradiance (W/m2), global horizontal irradiance (W/m2), pressure (Mbar), wind direction, wind speed (m/s), etc. at 1-hour intervals. The data is created with Chinese Standard Weather Database method to reflect the average level of historical weather based on the fifth-generation atmospheric reanalysis product released by the European Center (ERA5). The dataset is saved in a 55 GB database of compressed CSV files and uploaded to a website where users can obtain the required TMY data for certain cities according to the longitude and latitude information. This TMY-ERA5 dataset is fundamental and essential in building system designs of international construction projects, building performance simulation, etc. especially for some countries lacking ground meteorological stations or missing meteorological year data in the building profession. It can be used as references for other meteorological climate studies.
DOI: 10.3535/br2-c2r-mhs
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/glp-f5w-kfv
title: Panderodus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6g9-3jp-fxz
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6lj-hg2-xvr
title: Rexroadus cf. kentuckyensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6q0-tn9-2jd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vvw-2zs-8d0
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19487207.v2
title: Questionnaire on Remote Learning (Responses from students, teachers and parents).xlsx

description: The data is collected from students studying in LKG to the 5th standard, teachers and parents who are based in Kerala. The information collected is only for research purpose. In these questionnaires, the authors have dealt with issues faced by the young learners during the sudden closing of schools during the lockdown.
DOI: 10.15468/dl.uyn97a
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Senna septemtrionalis (Viv.) H.S.Irwin & Barneby"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009700-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/serc.9894266.v1
title: Dataset: Increasing rates of carbon burial in southwest Florida coastal wetlands

description: Rates of organic carbon (OC) burial in some coastal wetlands appear to be greater in recent years than they were in the past. Possible explanations include ongoing mineralization of older OC or the influence of an unaccounted-for artifact of the methods used to measure burial rates. Alternatively, the trend may represent real acceleration in OC burial. We quantified OC burial rates of mangrove and brackish marsh sites in southwest Florida through a comparison of rates derived from 210Pb, 137Cs, and surface marker horizons (MH). Age/depth profiles of lignin:OC were used to assess whether down-core remineralization had depleted the OC pool relative to lignin, and lignin phenols were used to quantify the variability of lignin degradation. OC burial rates increased in all seven cores by factors ranging from 1.4 to 6.2 over the past 120 years. We propose that these increases represent net acceleration. Change in relative sea-level rise is the most likely large-scale driver of acceleration, and sediment deposition from large storms can contribute to periodic increases. Mangrove sites had higher OC and lignin burial rates than interior marsh sites, indicating inherent differences in OC burial factors between the two habitat types. The higher OC burial rates in mangrove soils mean that their encroachment into interior, freshwater marshes has the potential to increase burial rates in those locations even more than might be expected from the acceleration trends. Regionally, these findings suggest that burial represents a substantially growing proportion of the coastal wetland carbon budget.<br>
DOI: 10.26188/28502201.v1
title: Paecilomyces variotii CBS144490.gff

description: Annotated assembly of Paecilomyces variotii strain CBS 144490
DOI: 10.34740/kaggle/dsv/11236431
title: ⏳ endoflife.date database (duckdb)
DOI: 10.3535/fd8-d1n-vp6
title: Heliolitina

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/knh-cyn-lq2
title: Dendrinidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3551724.v1
title: Appendix A. Key variables of the genotype mixtures used for the mixed microcosms.

description: Key variables of the genotype mixtures used for the mixed microcosms.
DOI: 10.3535/9vw-vpn-gwr
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c43-grv-hz1
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.