cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21774902.v1
title: Data for McAfee, Leung, Connell. Improving ecological function of polluted coasts under a tide of plastic pollution. Frontiers in Ecology and the Environment (FEE21-0330.R1).

description: This file contains the raw data for the oyster filtration experiments that are presented in the main manuscript (i.e., Figure 1) and the supplementary files (Panel Figure 1 and 2) of this paper (FEE21-0330.R1). No ethics approval was required for this work. <br> <em>Experiments for Figure 1 and Panel Figure 1 and 2</em>: Experiments were conducted using Australian Flat oysters (<em>Ostrea angasi</em>; ca. 2 years old) that were acclimated to controlled aquarium conditions (21.0 ± 0.5 °C; day/night cycle: 16/8 hr). Individual oysters were placed into experimental tanks (34 × 28 × 22 cm) filled with 17 L filtered seawater and cultivated microalgae (<em>Isochrysis </em>sp<em>.</em>) at an initial concentration of ~5 × 10<sup>5</sup> cells mL<sup>–1</sup>, and exposed to experimental treatments consisting of either 0, 10, or 100 µg L<sup>–1</sup> of polystyrene microspheres (diameter: 10 µm) crossed with either 0, 1, 2, 4 or 8 mg L<sup>–1</sup> of nitrigen fertiliser. Crossing all combinations of microplastic (three levels) and nitrogen (five levels) concentrations, 15 treatments were run both with and without oysters (<em>n</em> = 3 replicate tanks). Each of the 90 tanks were run in a temperature-controlled room (21.0 ± 0.5 °C) over four days under UV lights to stimulate continual growth of the microalgae. Changes in microalgae concentrations were measured per tank before and after the four-day exposure. From each tank, four aliquots (5 mL) were extracted, fixed with Lugol’s solution, and the microalgae concentration quantified using a haemocytometer under a light microscope. These four values were averaged to provide a single value per tank, with the process repeated for each replicate tank (<em>n</em> = 3 per treatment). <br> <em>Experiment for Panel Figure 2</em>: For the shock experiment, an individual oyster was placed in a tank (34 cm × 28 cm × 22 cm) filled with 7.5 L filtered seawater at one of four microplastic concentrations (0, 10, 100, or 1000 µg L–1; <em>n</em> = 5 replicate tanks per microplastic concentration). The oyster was allowed to rest for 2 hours, followed by adding algal suspension into the tank to obtain an initial microalgae concentration at ~5 × 105 cells mL–1. The oyster then fed for 9 hours. The final microalgae concentration was measured using a haemocytometer using the same method as described above. <br> Note<sup>1</sup>: the microplastic discharge data was extracted from Schmidt et al. 2017 (data accessible here: https://pubs.acs.org/doi/abs/10.1021/acs.est.7b02368), wheras the river water discharge values were extracted from: Milliman and Farnsworth (2011) River Discharge to the Coastal Ocean: A Global Synthesis. Cambridge University Press, Cambridge.
DOI: 10.17632/vnwm5jcz4y
title: Revolutionizing Water Treatment: Optimizing Moringa and Date Seed Extracts for Enhanced Alum Coagulation in Surface Water

description: Due to the increasing dependency on chemical coagulants in water treatment in Jordan, which carries environmental and health risks, this study seeks to enhance the coagulation process using eco-friendly alternative coagulants, specifically Moringa oleifera seeds (MOS), which is well-known as a natural coagulant, and Date SeedExtract (DSE), which has few studies in water turbidity reduction, in comparison to the conventional coagulant (Alum) and substituting that either wholly at different dosages or partly in ratios (70%, 50%, 30%). Utilizing response surface methodology (RSM), the study examines various factors influencing turbidity removal, including pH, coagulant type and dosage, and settling conditions. The findings indicate that combining natural coagulants with Alum enhances turbidity removal efficiency. A mixture of 30% Moringa and 70% Alum achieved a turbidity removal of 97.7%, outperforming MOS alone, which reached 94% at a 60-minute settling time. DSE, although showing a lower initial performance with 91.56% turbidity removal at optimal dosage, demonstrated significant improvement when combined with Alum. Specifically, a combination of 30% DSE and 70% Alum achieved 98% turbidity removal, while 50% DSE and 50% Alum reached 96.5% at 90 minutes. Additionally, the best results from the naturalcoagulants alone were observed with a combination of 70% MOS and 30% DSE, yielding a turbidity removal of 93.23%, followed by 50% MOS and 50% DSE at 92.57%. The study concludes that the strategic combination of natural and chemical coagulants not only enhances removal efficiency but also allows for a 30% reduction in chemical coagulant usage, thereby minimizing economic, operational, and environmental impacts.
DOI: 10.6084/m9.figshare.22061138.v1
title: Supplementary Material for: Long-term outcomes of endoscopic submucosal dissection for special type of esophageal cancer

description: Introduction: Esophageal cancers other than two types, squamous cell carcinoma (SCC) and adenocarcinoma, are commonly referred to as special type of esophageal cancer (STEC). Studies on STECs have been limited because of its low prevalence. Therefore, we aimed to clarify the clinicopathological findings and the long-term outcomes of STECs that were managed with ESD. Methods: We reviewed 713 patients with 1089 lesions who underwent ESD for primary esophageal cancer except Barrett’s esophageal cancer. Patients were classified into the SCC group and the STEC group, respectively. Their clinicopathological findings and long-term outcomes including diseases specific survival (DSS) were collected and examined. Results: A total of 19 consecutive patients (1.7 %) were diagnosed with STEC. Nine patients were diagnosed with basaloid carcinoma, 6 with adenosquamous carcinoma, 2 with mucoepidermoid carcinoma, 2 with salivary duct-type carcinoma, and 1 with neuroendocrine cell carcinoma. There was significantly more pT1b esophageal cancer (47.4% vs. 11.0%, p&lt;0.01) and lymphovascular invasion (31.6% vs. 10.2%, p=0.011) in the STEC group. Metastatic relapse and disease-specific mortality were significantly higher in the STEC group (both 15.8% vs. 1.2%, p&lt;0.01), and the STEC group had shorter DSS with 5-year DSS rates of 90.9%. In a subgroup analysis of patients with pT1a esophageal cancer, the 5-year DSS rate was shorter in the STEC group (p&lt;0.01). In the multivariate analysis, STEC (HR=0.24) and tumor depth (HR=12.60) were the factors associated with DSS. Discussion/Conclusion: STECs are suggested to have high malignant potential and to be an independent negative prognostic factor for DSS.
DOI: 10.17632/cwh9zx895f
title: Data for: Search Trends Preceding Increases in Suicide: A Cross-correlation Study with Transfer Function Models of Monthly Google Search Volume and Suicide Rate

description: This is the data used in the cross-correlation analysis between monthly search-volumes of suicide-related search terms and monthly suicide rates in the United States between 2004 and 2017.
DOI: 10.17632/f2dpgzb84c
title: Full bibliography numbered - MH PRU Covid-19 international document analysis

description: Bibliography for the MH PRU's rapid review and international document analysis of impact of Covid-19 on Mental Health care
DOI: 10.17632/pm9f8y537j
title: 15%Cr ferritic stainless steel

description: Fatigue-creep interaction behvior of 15% Cr ferritic stainless steel containing 0 or 0.5% Mo in mixed gas at 800C
DOI: 10.6084/m9.figshare.24794508.v1
title: Sigma dissimilarity analyses based on current and projected climate change

description: Sigma dissimilarity analyses to estimate exposure of threatened and commercial species to future novel conditions in the European marine protected areas
DOI: 10.6084/m9.figshare.8324312.v1
title: Association Arrays from Hierarchical social modularity in gorillas

description: Pairwise matrices of association between social units (groups and solitaries) for all datasets and both association indices (SR and BP)
DOI: 10.6084/m9.figshare.21432804.v17
title: EPOS-based Plans for Drones

description: The data is used for training and testing in EPOS-based coordination of drones in scale to complete spatio-temporal sensing tasks. The data is generated via the proposed plan generation strategy.
DOI: 10.6084/m9.figshare.29125661.v1
title: Metadata for a global atlas of soil microbial genetic resources

description: We compiled a global database of 1,609 soil metagenomes and found that hotspots exhibiting both high functional gene richness and dissimilarity are rare. Overall, fewer than 25% of hotspots of soil microbial genetic resources fell within designated protected areas. Meanwhile, global patterns of microbial gene richness and dissimilarity were largely decoupled from those in taxonomic biodiversity.
DOI: 10.6084/m9.figshare.15215106.v3
title: Reference evapotranspiration (PISCOeo_pm)

description: Gridded reference evapotranspiration dataset based on FAO Penman-Monteith during 1981-2016 (daily) at 0.01° for Peru
DOI: 10.6084/m9.figshare.24679401.v1
title: <b>Archived data for the manuscript: Frankenstein matrices: among-population life history variation affects the reliability and predictions of demographic models</b>

description: <pre>Data description for Rosa et al. - <b>F</b>rankenstein matrices: among-population life history variation affects the reliability and predictions of demographic models - Submitted to Journal of Animal Ecology - December 2023<br>NOTE: these data are private and only intended for peer review. The repository will be made publicly available after acceptance.<br><br>1) File "Frank_matrices_code.txt" contains the R code used to carry out matrix analyses and obtain "hybrid matrices".<br><br>2) File "All_estimates.txt" contains the demographic parameters, estimated using program MARK, inputted in the R code to perform population matrix analysis.<br><br>3)File "Appendix_2.xlsx" stores the data obtained during the analysis of the reversal of elasticities, performed for each of the three scenarios.</pre>
DOI: 10.6084/m9.figshare.25771302.v1
title: Telomere-to-telomere <i>Gossypium raimondii</i> genome (final version)

description: The genome sequence, gene, and transposable element annotation files for the <i>G. raimondii</i> are available at GitHub (https://github.com/huanggai/T2T-Cotton-DD5.git) and figshare (10.6084/m9.figshare.25771302). These files were the final versions. The manuscript entitled "A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development".
DOI: 10.17632/cpzg7kw428
title: Data for: Incentives, Performance and Choking in Darts

description: These files contain the raw data, the R code, and a reading guide for the article "Incentives, Performance and Choking in Darts".
DOI: 10.17632/7cjbbhb588
title: Elucidating the Influence of Laser Beam Shaping

description: This is the simulation data exported from the model and the beam shapes' plots.
The simulation model can be shared based on request.
DOI: 10.6084/m9.figshare.12910286.v1
title: Dataset - Recombination and Resistive Losses of Transferred Foil Contacts for Silicon Heterojunction Solar Cells

description: This dataset contains contact resistivity, contact recombination and reflectance data associated with the following publication. In this work, a novel low-cost approach to fabricate metal contacts for silicon heterojunction solar cells, called the transferred foil contact, is presented using aluminium foils with silver-based electrically conductive adhesive (ECA) pastes. The extended transfer length method (TLM) measurement technique is used to calculate the contact resistivity values. The contact recombination values were obtained by applying intensity-dependent photoluminescence (PL) imaging and subsequent multivariate regression analysis with finite element method (FEM) simulation called Griddler AI. Reflectance was measured using a quantum efficiency (QE) measurement system. <br>Iqbal, N., Li, M., Gregory, G., Dahal, S., Bowden, S. & Davis, K.O. Recombination and Resistive Losses of Transferred Foil Contacts for Silicon Heterojunction Solar Cells. physica status solidi (RRL) – Rapid Research Letters (2020). doi:10.1002/pssr.202000368<br>
DOI: 10.6084/m9.figshare.14259707.v4
title: Palmyra Portrait Project_full bibliography March 2022

description: Full bibliography of publications from the Palmyra Portrait Project, 2012-2022
DOI: 10.6084/m9.figshare.22109066.v1
title: Screening of lncRNA profiles during intramuscular adipogenic differentiation in <i>longissimus dorsi</i> and <i>semitendinosus</i> muscles in pigs

description: Intramuscular fat content is an important factor that determines meat quality in pigs. In recent years, epigenetic regulation has increasingly studied the physiological model of intramuscular fat. Although long noncoding RNAs (lncRNAs) play essential roles in various biological processes, their role in intramuscular fat deposition in pigs remains largely unknown. In this study, intramuscular preadipocytes in the <i>longissimus dorsi</i> and <i>semitendinosus</i> of Large White pigs were isolated and induced into adipogenic differentiation in vitro. High-throughput RNA-seq was carried out to estimate the expression of lncRNAs at 0, 2 and 8 days post-differentiation. At this stage, 2135 lncRNAs were identified. KEGG analysis showed that the differentially expressed lncRNAs were common in pathways involved with adipogenesis and lipid metabolism. lnc_000368 was found to gradually increase during the adipogenic process. Reverse-transcription quantitative polymerase chain reaction and a western blot revealed that the knockdown of lnc_000368 significantly repressed the expression of adipogenic genes and lipolytic genes. As a result, lipid accumulation in porcine intramuscular adipocytes was impaired by the silencing of lnc_000368. Overall, our study identified a genome-wide lncRNA profile related to porcine intramuscular fat deposition, and the results suggest that lnc_000368 is a potential target gene that might be targeted in pig breeding in the future.
DOI: 10.6084/m9.figshare.4977746.v1
title: Supplementary Material for: Precision Genetic and Genomic Medicine in the Middle East and North Africa Region: Are We There Yet?

description: <b><i>Purpose:</i></b> As precision medicine continues its expansion into clinical practice and research settings, it is time to investigate genetic and genomic research in the Middle East and North Africa (MENA) region to identify the strengths and deficits and to provide suggestions for future development. <b><i>Methods:</i></b> We performed a literature review of any genetic or genomic publications on breast cancer and type 2 diabetes for the years 2000-2015 and evaluated the translational value of the research using multiple evaluation metrics, including the “continuum of translation” and the Health Impact Pyramid. <b><i>Results:</i></b> A total of 138 type 2 diabetes and 231 breast cancer publications were included. There were few cohort studies or randomized controlled trials, and there was a distinct lack of pharmacogenetic or pharmacogenomic papers. Most studies were not interventional but instead evaluated susceptibility, and when placed on the continuum of translation, more than 90% of the studies were T1. <b><i>Conclusion:</i></b> This study suggests that the translational value of genetic and genomic research in the MENA region is currently suboptimal. Moving forward requires international cooperation and a collaborative cohort program in order to implement precision medicine in this area of the world.
DOI: 10.6084/m9.figshare.6292883.v1
title: in vitro data

description: data from multiple ELISA assays
DOI: 10.17605/osf.io/g6p4a
title: Health Communication and Pedophilia: A Scoping Review

description: This OSF project contains the protocol and supplementary material of the scoping review titled "Health Communication and Pedophilia: A Scoping Review," conducted by researchers at the Institute of Sexology and Sexual Medicine, Charité – Universitätsmedizin Berlin.
DOI: 10.17632/gydpxvj8gp
title: Microbial fuel cell data set

description: The experimental data set consists of data illustrates the effect of two different electron acceptors on the performance of voltage generation, power density, current density and COD removal efficiency of brewery waste. Pysico-chemical properties of the waste water used during the experiment (Table1) . Substrate feed (loading) (Table 2) and electron acceptor solution concentration (Table 3) used in the experiment. Fig1 illustrates the experimental Microbial fuel cell set up used during the experiment. Data presented in Fig.2. consists of, removal and columbic and Voltage generation as an electron acceptor of MFC used during the experiment with KMnO4 and K3[Fe (CN)6 as an electron acceptor at 0.4 M concentration, each sample has been measured with mean followed by standard deviation with three times (as provided in supplementary materials. Fig 3 and Fig 4 shows the effect of molar concentration(0.4&0.6M) as KMnO4 as an electron acceptor on voltage generation capacity of the MFC at different COD concentration (500mg/L,1000mg/L,1500mg/L,2000mg/L). The effect of molar concentration (0.4&0.6M) as 4K3[Fe(CN)6 as an electron acceptor on voltage generation capacity of the MFC at different COD concentration (500mg/L,1000mg/L,1500mg/L,2000mg/L) well illustrated in (Fig5 and Fig 6).Fig7(a) shows data recorded and estimated on current density against polarization and power density curves using KMno4 used as an electron acceptor and Fig7(b). demonstrates on current density against polarization and power density curves using K3[Fe (CN)6 used as an electron acceptor.
DOI: 10.17632/zrzpvnn5yw
title: Supplementary Tables 1 and 2 for ChatGPT Inputs, Outputs, and Categories of Suggested Diagnoses for Malignant and Benign Skin Neoplasms 

description: Full ChatGPT Inputs, Outputs, and Categories of Suggested Diagnoses for Malignant and Benign Skin Neoplasms.
DOI: 10.6084/m9.figshare.28070603.v1
title: Experimental data (Human-inspired Question Answering over Knowledge Graphs in Multiple Languages with LLM Agents)

description: Experimental data for the paper Human-inspired Question Answering over Knowledge Graphs in Multiple Languages with LLM Agents submitted @ ESWC 2025
DOI: 10.17632/52z24w5jmb
title: How well do biophysical models characterise the thermal energetics of small invasive passerines: a case study on common waxbills

description: This contains the original Excel files and R scripts used to generate the analyses and figures presented in the manuscript "How well do biophysical models characterise the thermal energetics of small invasive passerines: a case study on common waxbills". It includes four scripts, which used NicheMapR to predict the energy expenditure (EE) and thermoneutral zone (TNZ) of common waxbills, as well as to conduct sensitivity analysis of these predictions. 

The Excel files contain the raw data used in the analysis, including measurements of metabolic rates (summer and autumn BMR, RMR and TNZ), body masses before and after the 73-hour experiment, the gross energy content of food and bird excreta from the 73-hour experiment, environmental temperatures during the 73-hour experiment, and morphological measurements of common waxbills from museum specimens.
DOI: 10.17632/gsgzv82smz
title: Microbiological quality and safety of dry-aged beef

description: A cross-sectional survey was undertaken in 15 Belgian dry-aged beef producing companies to study the microbiological load of loins during production and of the final product (dry-aged beef steaks). In each company, two loins (each in a different stage of the ripening process) were sampled and the temperature and relative humidity of the ripening chamber were measured. A lean meat and adipose tissue sample from the surface of each loin was analysed separately using conventional methods for the enumeration of different groups of bacteria, yeasts and moulds. The microbiological load of dry-aged beef after cutting was evaluated by analysing the surface (crust) and two meat cuts (steaks) from each of 15 loins originating from five dry-aged beef producing companies. The datasets are provided as csv files.
DOI: 10.17632/hbptbpyw75
title: Simulation results of permafrost on the Qinghai-Tibet Plateau

description: This datasets include the the present and future changes of ground temperature and active layer thickness on the Qinghai-Tibet Plateau.
DOI: 10.17632/n2mhmtvpjt
title: A program to calculate fractional parentage coefficients for jj-coupling states with equivalent particles

description: Abstract The n−1→n fractional parentage coefficients (FPC's) for the jj-coupling states with equivalent particles in a j shell are calculated by using the branching rules for the unitary group U(2j+1) and the recurrence formula for the FPC's. Title of program: JJFPC Catalogue Id: ACJY_v1_0 Nature of problem This Program calculates the n - 1 -&gt; n fractional parentage coefficients (FPC's) for the jj-coupling states with equivalent particles in a j shell. The FPC's are needed in the evaluation of matrix elements for one- or two-body operators corresponding to various physical quantities in atomic or nuclear systems combined with the recoupling coefficients and the reduced matrix elements of these operators. Use of the FPC's makes one possible to remove a tedious treatment of the antisymmetrization of ... Versions of this program held in the CPC repository in Mendeley Data ACJY_v1_0; JJFPC; 10.1016/0010-4655(92)90148-R This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.14211251.v1
title: mBio_Wang_etal_2020_supplement_TableS8

description: <b>Supplemental Table S8. Average 3’ UTR lengths for all detectable genes across the 21 <i>C. albicans </i>isolates.</b>
DOI: 10.11583/dtu.7599698.v1
title: Historic data of wind turbine installations in the whole of Denmark from the Danish Energy Agency (Energistyrelsen)

description: This dataset is a collection of historic data of wind turbine installations in the whole of Denmark from the Danish Energy Agency (Energistyrelsen) used in a flexibility study by Karen Olsen in 2018 (paper has been submitted to a PowerTech conference).<br><br>The data has been extracted from the website of Energistyrelsen at the following link where historic data is publicly available (called "Stamdataregister"):http://ens.dk/service/statistik-data-noegletal-og-kort/data-oversigt-over-energisektoren The present version was extracted in January 2019 and contains installation and production data until and including December 2018. <br>The data is in the originally downloaded excel file, ready to be parsed by the python code written by Karen Olsen.<br><br>Data used for analysis:- turbine ID number (column: "Turbine identifier (GSRN)" in the excel spreadsheet)- date of installation (column: "Date of original connection to grid" in the excel spreadsheet)- turbine capacity (column: "Capacity (kW)" in the excel spreadsheet)- turbine location commune (column: "Local authority no" in the excel spreadsheet)- turbine placing sea/land (column: "Type of location" in the excel spreadsheet)- yearly production (columns starting at: "Historic production figures (kWh):" in the excel spreadsheet)<br>Further information and code for analysis can be found under:<br>http://kpolsen.github.io/windpype_dev/