cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vnfyht7jff.1
title: Clinical Features and Diagnostic Challenges of Genital Ulcer Biopsies: A Retrospective Review - Supplementary Material

description: Supplementary Table I: ICD-10 diagnosis codes used pertaining to external genital ulcers
DOI: 10.25402/bmm.22240570
title: Serum ITIH4 in coronary heart disease: a potential anti-inflammatory biomarker related to stenosis degree and risk of major adverse cardiovascular events. Supplementary Table 1

description: Aim: This study aimed to investigate the correlation of ITIH4with inflammatory cytokines, stenosis degrees
and prognosis in coronary heart disease (CHD) patients. Methods: Serum ITIH4 levels of 300 CHD patients
and 30 controls, together with levels of TNF-α, IL-6, IL-8 and IL-17A of CHD patients, were determined
using ELISA. Results: Serum ITIH4 was reduced in CHD patients versus controls (p &lt; 0.001). ITIH4 was
negatively linked with TNF-α, IL-6, IL-8, IL-17A, C-reactive protein, serum creatinine and Gensini score
in CHD patients (all p &lt; 0.050). ITIH4 quartile level negatively correlated with the cumulative major
adverse cardiovascular event rate (p = 0.041). Conclusion: Serum ITIH4 may serve as an anti-inflammatory
biomarker that negatively associates with stenosis degree and major adverse cardiovascular event risk in
CHD patients.
DOI: 10.25402/bmm.22240570.v1
title: Serum ITIH4 in coronary heart disease: a potential anti-inflammatory biomarker related to stenosis degree and risk of major adverse cardiovascular events. Supplementary Table 1

description: Aim: This study aimed to investigate the correlation of ITIH4with inflammatory cytokines, stenosis degrees
and prognosis in coronary heart disease (CHD) patients. Methods: Serum ITIH4 levels of 300 CHD patients
and 30 controls, together with levels of TNF-α, IL-6, IL-8 and IL-17A of CHD patients, were determined
using ELISA. Results: Serum ITIH4 was reduced in CHD patients versus controls (p &lt; 0.001). ITIH4 was
negatively linked with TNF-α, IL-6, IL-8, IL-17A, C-reactive protein, serum creatinine and Gensini score
in CHD patients (all p &lt; 0.050). ITIH4 quartile level negatively correlated with the cumulative major
adverse cardiovascular event rate (p = 0.041). Conclusion: Serum ITIH4 may serve as an anti-inflammatory
biomarker that negatively associates with stenosis degree and major adverse cardiovascular event risk in
CHD patients.
DOI: 10.15468/dl.xy5rse
title: Occurrence Download

description: A dataset containing 1362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aeorestes cinereus (Palisot de Beauvois, 1796)"
 ]
}

 The dataset includes 1362 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021344-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m98r5r
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Eurycea chisholmensis Chippindale, Price, Wiens & Hillis, 2000"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021345-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21972446.v1
title: Release of a ubiquitin brake activates OsCERK1-triggered immunity in rice

description: Source gels and blots data of this paper
DOI: 10.6084/m9.figshare.21972446
title: Release of a ubiquitin brake activates OsCERK1-triggered immunity in rice

description: Source gels and blots data of this paper
DOI: 10.6084/m9.figshare.24613599.v1
title: Macro-scale relationship between body mass and timing of bird migration

description: All the migration timing of tracking birds is compiled from published papers
DOI: 10.6084/m9.figshare.24613599
title: Macro-scale relationship between body mass and timing of bird migration

description: All the migration timing of tracking birds is compiled from published papers
DOI: 10.6084/m9.figshare.24150888
title: Redox-induced Controllable Engineering of MnO2-MnxCo3-xO4 Interface to Boost Catalytic Oxidation of Ethane

description: In this figshare, it includes all the original data, for example chemicals, catalyst preparation, catalysts characterization, evaluation of the catalyst activity and computational details.
DOI: 10.6084/m9.figshare.24150888.v1
title: Redox-induced Controllable Engineering of MnO2-MnxCo3-xO4 Interface to Boost Catalytic Oxidation of Ethane

description: In this figshare, it includes all the original data, for example chemicals, catalyst preparation, catalysts characterization, evaluation of the catalyst activity and computational details.
DOI: 10.15468/dl.jbtgb2
title: Occurrence Download

description: A dataset containing 3630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Agalychnis callidryas (Cope, 1862)",
 "Year 2000-2024"
 ]
}

 The dataset includes 3630 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021346-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25563525
title: 1q amplification and PHF19 expressing high-risk cells are associated with relapsed/refractory multiple myeloma

description: These are the data required to generate all figure panels in the manuscript titled: "1q amplification and PHF19 expressing high-risk cells are associated with relapsed/refractory multiple myeloma".

Please see Fig_Stats.R for details about which files can be used to generate which figure panels. Please see https://github.com/tsteelejohnson91/MM_CD138pos_scripts and www.synapse.org/#!Synapse:syn52295155 for additional details.
DOI: 10.6084/m9.figshare.25406611.v1
title: Sustainable thermal regulation improves stability and efficiency in all-perovskite tandem solar cells

description: These are the source data for manuscript and supporting information.
DOI: 10.5281/zenodo.10012832
title: Dataset related to article "Potent CD8+ T cell effector functions induced by NaCl in cancer immunotherapy"

description: abstract under definition
DOI: 10.5281/zenodo.11207609
title: MIVIA Dataset of Biological Graphs

description: The databases have been structured for the monomorphism problem, so each one is composed of very large graphs, called target, from which have been extracted a set of not induced subgraphs, called pattern, and so grouped by three densities: 1, 0.5 and 0.25. The aim of the authors is to use pattern graphs as queries on the target graph. We do not use all the six databases, but the following tree:



AIDS: a molecular database containing 40000 graphs, from 4 to 256 nodes, representing the topological structure of a chemical compound tested for evidence of anti-HIV activity. 

Graemlin: database contains 10 target graphs having up to 6726 nodes, extracted from 10 microbial networks.

Protein-Protein interaction (PPI): a dataset networks contains 10 network graphs, from 5720 to 12575 nodes, describing known protein interactions of 10 organisms. This is composed of more dense and big graphs than those in Graemlin.


The Graemlin and PPI databases have nodes with no labels. Since graph matching algorithms usually employ label information to reduce the computational costs, the matching times on unlabeled graphs are very long. For this reason, we have attached labels to the nodes of the graphs. The labels have been generated using random integer values. We have generated 5 labeled version of each database, varying the number of possible label values (128, 256, 512, 1024 and 2048 values have been used). For graph isomorphism we have generated two new databases, extracting random node-induced subgraphs from the target graphs in Graemlin and PPI; for each graph, 10 random permutations of the nodes have been computed to obtain isomorphic pairs of graphs. In order to test isomorphism algorithms on dense graphs, we have also added extra edges at random. So finally we have two isomorphism databases having 700 pairs, varying from 8 to 512 nodes.
DOI: 10.5281/zenodo.11207610
title: MIVIA Dataset of Biological Graphs

description: The databases have been structured for the monomorphism problem, so each one is composed of very large graphs, called target, from which have been extracted a set of not induced subgraphs, called pattern, and so grouped by three densities: 1, 0.5 and 0.25. The aim of the authors is to use pattern graphs as queries on the target graph. We do not use all the six databases, but the following tree:



AIDS: a molecular database containing 40000 graphs, from 4 to 256 nodes, representing the topological structure of a chemical compound tested for evidence of anti-HIV activity. 

Graemlin: database contains 10 target graphs having up to 6726 nodes, extracted from 10 microbial networks.

Protein-Protein interaction (PPI): a dataset networks contains 10 network graphs, from 5720 to 12575 nodes, describing known protein interactions of 10 organisms. This is composed of more dense and big graphs than those in Graemlin.


The Graemlin and PPI databases have nodes with no labels. Since graph matching algorithms usually employ label information to reduce the computational costs, the matching times on unlabeled graphs are very long. For this reason, we have attached labels to the nodes of the graphs. The labels have been generated using random integer values. We have generated 5 labeled version of each database, varying the number of possible label values (128, 256, 512, 1024 and 2048 values have been used). For graph isomorphism we have generated two new databases, extracting random node-induced subgraphs from the target graphs in Graemlin and PPI; for each graph, 10 random permutations of the nodes have been computed to obtain isomorphic pairs of graphs. In order to test isomorphism algorithms on dense graphs, we have also added extra edges at random. So finally we have two isomorphism databases having 700 pairs, varying from 8 to 512 nodes.
DOI: 10.5281/zenodo.7648739
title: Microscopy Images of Drosophila Wing

description: Microscopy Images of the Drosophila Wing dataset are divided into two folders, Tumor/ No Tumor. The tumor folder has images of different stages of cancer, including both early and late stages. The organization of images was done in a way that the Tumor Folder has images that already have a Tumor or is going to develop cancer in the next few days. In contrast, the No Tumor Folder has images with no sign of cancer or a tiny tumor percentage that will be suppressed the following day. The goal of using this dataset is to be able to predict the future of the fly, whether it is going to develop or suppress the tumor.
DOI: 10.6084/m9.figshare.25853260
title: Database.xls

description: seven datasets on pore water in loose rocks from the Quaternary in Jilin City as the basic data.
DOI: 10.6084/m9.figshare.25853260.v1
title: Database.xls

description: seven datasets on pore water in loose rocks from the Quaternary in Jilin City as the basic data.
DOI: 10.5281/zenodo.11207602
title: Logratio table of in-situ U-Th-4He/3He dated Fish Canyon zircon

description: The U-Th-He logratio compositions of 61 Fish Canyon zircons dated by laser microprobe analysis using proton-induced 3He as a proxy for ablation pit volume.
DOI: 10.5281/zenodo.8005222
title: Logratio table of in-situ U-Th-4He/3He dated Fish Canyon zircon

description: The U-Th-He logratio compositions of 61 Fish Canyon zircons dated by laser microprobe analysis using proton-induced 3He as a proxy for ablation pit volume.
DOI: 10.5281/zenodo.8005223
title: Logratio table of in-situ U-Th-4He/3He dated Fish Canyon zircon

description: The U-Th-He logratio compositions of 61 Fish Canyon zircons dated by laser microprobe analysis using proton-induced 3He as a proxy for ablation pit volume.
DOI: 10.5281/zenodo.11207497
title: Dataset of "Comparison of Localization Methods for Internet of Things in 5G Cellular Networks: A Wide-scale Assessment"

description: As the 3rd generation partnership project (3GPP) organization pushes out new releases,positioning in heterogeneous mobile networks enables the achievement of the accuracy requiredin the majority of industrial applications without dependence on global navigationsatellite systems (GNSS). This study presents the results gathered during an extensive measurementcampaign related to the practical applicability of localization in next-generationheterogeneous networks. We present an accuracy comparison of basic timing advance (TA)localization with the k-nearest neighbor (KNN), decision tree-based random forest (RF),extreme gradient boosting (XGBoost), and long short-term memory (LSTM) recurrent neuralnetwork. Our results demonstrate that TA cannot be considered an optimal solutionfrom the perspective of localization accuracy because the error roughly corresponds to theaverage separation distance from the base station (BS) to the end device (ED). In addition,we found that the LSTM approach is not optimal for the outdoor localization of movingED because of the combination of multiple factors, with sparse deployment being the mostimportant. The median value of the location error of the LSTM was more than 200m higherthan that of the TA for the self-validation dataset. However, a simple KNN regression showssolid results for 5G New Radio (NR) operating in the non-standalone (NSA) mode. KNNprovided the most accurate results of all methods, with median error values of approximately12 (k=3) and 82 (k=5) m for the self-validated and cross-validated datasets, respectively.
DOI: 10.5281/zenodo.11207498
title: Dataset of "Comparison of Localization Methods for Internet of Things in 5G Cellular Networks: A Wide-scale Assessment"

description: As the 3rd generation partnership project (3GPP) organization pushes out new releases,positioning in heterogeneous mobile networks enables the achievement of the accuracy requiredin the majority of industrial applications without dependence on global navigationsatellite systems (GNSS). This study presents the results gathered during an extensive measurementcampaign related to the practical applicability of localization in next-generationheterogeneous networks. We present an accuracy comparison of basic timing advance (TA)localization with the k-nearest neighbor (KNN), decision tree-based random forest (RF),extreme gradient boosting (XGBoost), and long short-term memory (LSTM) recurrent neuralnetwork. Our results demonstrate that TA cannot be considered an optimal solutionfrom the perspective of localization accuracy because the error roughly corresponds to theaverage separation distance from the base station (BS) to the end device (ED). In addition,we found that the LSTM approach is not optimal for the outdoor localization of movingED because of the combination of multiple factors, with sparse deployment being the mostimportant. The median value of the location error of the LSTM was more than 200m higherthan that of the TA for the self-validation dataset. However, a simple KNN regression showssolid results for 5G New Radio (NR) operating in the non-standalone (NSA) mode. KNNprovided the most accurate results of all methods, with median error values of approximately12 (k=3) and 82 (k=5) m for the self-validated and cross-validated datasets, respectively.
DOI: 10.4228/zalf-s0sr-3c05
title: Monitoring of tree growth, water relations and element budget of a mature beech (Fagus sylvatica L.) forest ecosystem in Brandenburg, Germany

description: The water and element budgets and the vegetation of a mature beech forest stand (Fagus sylvatica L.) in Brandenburg, Germany were investigated over 19 years from 2001 to 2019. 
The dataset contains data on open land and forest stand internal meteorology including soil moisture, soil matric potential, soil temperature, concentrations of macro elements and heavy metals in bulk precipitation, throughfall, stemflow, and soil solution. Data on stem growth and litterfall describe the development of the forest stand.
The experimental approach is similar to that of the ICP Forest level II plots (http://icp-forests.net), but additionally considers the spatial variability in the stem distance gradient for throughfall and soil solution.
This table contains the index of all tables forming this data collection.

Related datasets are listed in the metadata element 'Related Identifier'.
Dataset version 1.0
DOI: 10.4228/zalf-g5pj-m724
title: Soil respiration of a European beech and a Scots pine forest

description: <p>The data collection contains 6-year measurement data series (2014-2019) on CO2 concentration, temperature and moisture in different soil depths of a European beech forest (Fagus sylvatica) and a Scots pine forest (Pinus sylvestris) in the northeast German lowlands both representing intensive monitoring plots in the ICP Forests programme (http://icp-forests.net). In addition, occasionally collected measurement data (67 and 64 dates for the beech and pine forest, respectively) on CO2 efflux with the closed chamber method over 2 years (2018-2019) are included. Data on air temperature and air pressure complete the data set.</p> 

<p>The data was processed and used to calculate the CO2 efflux and the soil layer-specific CO2 production using the flux-gradient method. This detailed model input data and simulation results are also included.</p> 

<p>Details of the methods and results were presented in Jochheim et al. (2018), https://doi.org/10.1002/jpln.201700259 and Jochheim et al. (2022), https://doi.org/10.3389/ffgc.2022.826298. 
This table contains the index of all tables forming this data collection.</p>

<p>Related datasets are listed in the metadata element 'Related Identifier'.
Dataset version 1.0</p>

<p> !! Due to the size of the data it can take longer to receive the download link. Please be patient. </p>
DOI: 10.25402/fca.14617806.v1
title: Supplementary table 1: Multiomics, virtual reality and artificial intelligence in heart failure.docx

description: Supplemental Table 1
 -<b> Timing points based on audio track</b>
DOI: 10.25402/fca.17091632.v1
title: Supplementary Table 1: Ranolazine: A better understanding of pathophysiology and patient profile to guide treatment of chronic stable angina.docx

description: <b>Supplementary Table
 1</b>. Ranolazine: A better
 understanding of pathophysiology and patient profile to guide treatment of
 chronic stable angina. 
 
 <i>The many faces of
 Chronic Coronary Syndromes.</i>
DOI: 10.25402/fca.18115136.v1
title: Supplementary Tables: Hybrid coronary revascularization in multivessel coronary artery disease: a systematic review

description: <b>Supplementary Table 1. PICOS criteria for inclusion and
exclusion of studies. </b>NR:
not reported. HCR: hybrid coronary revascularization. PCI: percutaneous
coronary intervention. CABG: coronary artery bypass grafting. TECAB: totally
endoscopic coronary artery bypass. MIDCAB: minimally invasive direct coronary
artery bypass. MACCEs: major adverse cardiac and cerebrovascular events. OR:
odds ratio. LITA: left internal thoracic artery. * Data are given for HCR and
CABG / PCI arms, respectively, expressed as a percentage ** Data are
given for HCR and CABG / MV-PCI arms, respectively, expressed as a
percentage *** Data are given for HCR and CABG (bilateral internal
mammary/single internal mammary) arms, respectively, expressed as a percentage.<br>

<b>Supplementary
Table 2. Quality assessment of the included original studies. </b>Results for binary endpoints are
presented as odds ratio (95% confidence interval) or relative risk (95%
confidence interval), as defined in the original publication. Results for
continuous endpoints are presented as mean difference (95% confidence
interval). Odds, ratios and differences are referred to HCR versus control
group. P value is related to overall effect. I<sup>2</sup> indicates
heterogeneity. on-CABG: on-pump CABG only; off-CABG: off-pump CABG only; NR:
not reported. * thousands of US dollars<br>

<b>Supplementary
Table 3. PRISMA checklist. </b>NA: not available for this study.
DOI: 10.25402/fca.20131703.v1
title: Supplementary material: Coenzyme Q10 supplementation for the treatment of statin-associated muscle symptoms

description: Supplementary material:  STUDY PARTICIPANT QUESTIONNAIRE #1
DOI: 10.25402/fca.20376219.v1
title: Supplemental_Table 1: Calcification of the ascending aorta, left heart valves and coronaries: associated diseases and a new classification.docx

description: Supplemental Table 1: Descriptive statistical analysis showing the distribution of the variables considered in the study population.
DOI: 10.25402/fca.20792635.v1
title: Supplementary Table 1: Anticoagulation and BMI: effect of high body weight on the safety and efficacy of direct oral anticoagulants.docx

description:   
<strong>Supplemental Table 1. Summary of clinical trials on apixaban and rivaroxaban efficacy and safety in obese populations</strong>
DOI: 10.6084/m9.figshare.25845922
title: Supplementary Material for: Whole Exome Sequencing of a multiplex family of Indian origin identifies variants in the RAI1 and FLII genes within the 17p11.2 region in siblings with autism and Smith Magenis Syndrome

description: Introduction: Autism Spectrum Disorders (ASDs) is a complex neurodevelopmental disorder characterized by restrictive repetitive behaviour and impairment in social and communication skills. It is extremely heterogeneous with a strong genetic preponderance. It is clinically highly convoluted, represented with multiple comorbid conditions and syndromic features. More than 100 genes have been identified till date.
Method: Whole exome sequencing (WES) has emerged as a valuable tool in evaluating the genetic underpinnings of ASDs, be it the syndromic or the idiopathic variants. In the current study, we performed WES on a multiplex family of Indian origin to investigate the disease aetiology in the siblings (S1 (Female) and S2 (Male)) exhibiting ASD syndromic features, at both clinical and genetic aspects. 
Results: Exome sequencing identified a missense variant (NM_030665.4:c.5320C&gt;T; p.Arg1774Trp) in S1 resulting in RAI1 haploinsufficiency. Validation by Sanger Sequencing confirmed that the variant was true positive and maternally transmitted in the subject. Likewise, we report an inherited missense variant at the same locus (17p11.2) corresponding to the FLII gene (NM_002018.4:c.2030A&gt;C;p.Glu677Ala) in the other sibling, S2. Both the variants were reported in the Smith Magenis Syndrome (SMS) critical region justifying its contribution to the presentation of the syndromic SMS features. These WES findings were consistent with the clinical findings that imply SMS features in both siblings.
Conclusions: The current study employs WES to provide insights into the genetic complexity associated with syndromic ASD and how that contribute to the disease heterogeneity. Moving forward, combinatorial approaches and findings from syndromic ASDs can potentially act as indicators to understand the genetic and phenotypic variations seen in the idiopathic ASD.
DOI: 10.25402/fca.21602820.v1
title: Supplementary Table 1: The top 100 cited articles on spontaneous coronary artery dissection: a bibliometric analysis.docx

description:      
<strong>Supplementary Table 1. Rank order of articles by citation density</strong>
DOI: 10.25402/fca.21502161.v1
title: Supplementary Table 1: Predictors of gastrointestinal bleeding in patients following left ventricular assist device implantation: a systematic review and meta-analysis.docx

description: <strong>Supplementary Table 1:  Characteristics table for included studies.</strong>