cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30908849.v1
title: Competition-function-structure cascade mediates climate-driven forest network reorganization (Only Data)

description: Understanding how climate change reorganizes forest ecosystems has often treated functional shifts and structural connectivity as separate processes. However, this compartmentalized view limits our ability to predict landscape-level outcomes, especially in fragmented urban forests where these dynamics critically intersect. To bridge this gap, we integrate functional diversity metrics with spatial network analysis, using the LANDIS-II model to simulate forest aboveground biomass dynamics in the Pearl River Delta urban agglomeration from 2010 to 2100 under multiple climate scenarios. Here, we only provide the data that might be used during operation. For further exploration and research/code, please refer to another sharing on Figshare（https://doi.org/10.6084/m9.figshare.30908474）.
DOI: 10.15468/dl.w6grdn
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Codakia punctata, Codokia punctata, Cytherea punctata, Lentillaria punctata, Lucina punctata, Venus punctata)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057583-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30254089
title: <b>Vocal complexity constrains the dear enemy effect: a comparative study of coal tits and green-backed tits</b>

description: This study was conducted in the Liupanshan National Nature Reserve (35°15′－35°41′ N, 106°09′－106°30′ E), Ningxia Hui Autonomous Region, northwestern China. The reserve covers approximately 67,800 hectares and features an elevation range of 1,935 to 2,371 meters above sea level with forest coverage exceeding 70%. The climate is mid-temperate, transitioning semi-humid to semi-arid, characterized by a mean annual temperature of 5.8℃ and average annual precipitation ranging of 600-800 mm. Vegetation is diverse, primarily consisting of secondary coniferous forest, broadleaf mixed forests, and meadow grasslands. Key tree species include the Chinese red pine (<i>Pinus tabuliformis</i>) and Asian white birch (<i>Betula platyphylla var. japonica</i>) (Shi et al. 2009).The “dear enemy effect”, wherein territorial animals reduce aggression toward familiar neighbors while maintaining heightened responses to strangers, is a widespread strategy to minimize energy expenditure on territory defense. However, its expression across species with varying vocal complexities remains poorly understood. This study investigated neighbor-stranger discrimination in two sympatric tit species exhibiting contrasts in song repertoire complexity: coal tits (<i>Periparus ater</i>) with large, complex repertoires (21 distinct song types) and green-backed tits (<i>Parus monticolus</i>) with limited, simple repertoires (4 song types). Using playback experiments, we assessed behavioral responses to songs of familiar neighbors versus strangers. Coal tits exhibited robust discrimination, responding with significantly greater aggression (e.g., increased flight frequency within 5-meter radius of the nest box and closer approach distance to the speaker) to strangers, aligning with the dear enemy effect. In contrast, green-backed tits showed minimal and undifferentiated responses to both songs of familiar neighbors and strangers, indicating a lack of discrimination. These results demonstrate that the dear enemy effect is not universal and that vocal repertoire complexity plays a critical role in shaping individual recognition abilities. Our study underscores the importance of bioacoustics constrains in territorial behaviors and highlights how simplified vocal signals may limit the expression of complex social behaviors such as neighbor-stranger discrimination.
DOI: 10.6084/m9.figshare.30254089.v1
title: <b>The ‘dear enemy effect’ depends on vocal complexity: strong discrimination in coal tits but absence in green-backed tits</b>

description: This study was conducted in the Liupanshan National Nature Reserve (35°15′－35°41′ N, 106°09′－106°30′ E), Ningxia Hui Autonomous Region, northwestern China. The reserve covers approximately 67,800 hectares and features an elevation range of 1,935 to 2,371 meters above sea level with forest coverage exceeding 70%. The climate is mid-temperate, transitioning semi-humid to semi-arid, characterized by a mean annual temperature of 5.8℃ and average annual precipitation ranging of 600-800 mm. Vegetation is diverse, primarily consisting of secondary coniferous forest, broadleaf mixed forests, and meadow grasslands. Key tree species include the Chinese red pine (<i>Pinus tabuliformis</i>) and Asian white birch (<i>Betula platyphylla var. japonica</i>) (Shi et al. 2009).The “dear enemy effect”, wherein territorial animals reduce aggression toward familiar neighbors while maintaining heightened responses to strangers, is a widespread strategy to minimize energy expenditure on territory defense. However, its expression across species with varying vocal complexities remains poorly understood. This study investigated neighbor-stranger discrimination in two sympatric tit species exhibiting contrasts in song repertoire complexity: coal tits (<i>Periparus ater</i>) with large, complex repertoires (21 distinct song types) and green-backed tits (<i>Parus monticolus</i>) with limited, simple repertoires (4 song types). Using playback experiments, we assessed behavioral responses to songs of familiar neighbors versus strangers. Coal tits exhibited robust discrimination, responding with significantly greater aggression (e.g., increased flight frequency within 5-meter radius of the nest box and closer approach distance to the speaker) to strangers, aligning with the dear enemy effect. In contrast, green-backed tits showed minimal and undifferentiated responses to both songs of familiar neighbors and strangers, indicating a lack of discrimination. These results demonstrate that the dear enemy effect is not universal and that vocal repertoire complexity plays a critical role in shaping individual recognition abilities. Our study underscores the importance of bioacoustics constrains in territorial behaviors and highlights how simplified vocal signals may limit the expression of complex social behaviors such as neighbor-stranger discrimination.
DOI: 10.6084/m9.figshare.30254089.v2
title: <b>Vocal complexity constrains the dear enemy effect: a comparative study of coal tits and green-backed tits</b>

description: This study was conducted in the Liupanshan National Nature Reserve (35°15′－35°41′ N, 106°09′－106°30′ E), Ningxia Hui Autonomous Region, northwestern China. The reserve covers approximately 67,800 hectares and features an elevation range of 1,935 to 2,371 meters above sea level with forest coverage exceeding 70%. The climate is mid-temperate, transitioning semi-humid to semi-arid, characterized by a mean annual temperature of 5.8℃ and average annual precipitation ranging of 600-800 mm. Vegetation is diverse, primarily consisting of secondary coniferous forest, broadleaf mixed forests, and meadow grasslands. Key tree species include the Chinese red pine (<i>Pinus tabuliformis</i>) and Asian white birch (<i>Betula platyphylla var. japonica</i>) (Shi et al. 2009).The “dear enemy effect”, wherein territorial animals reduce aggression toward familiar neighbors while maintaining heightened responses to strangers, is a widespread strategy to minimize energy expenditure on territory defense. However, its expression across species with varying vocal complexities remains poorly understood. This study investigated neighbor-stranger discrimination in two sympatric tit species exhibiting contrasts in song repertoire complexity: coal tits (<i>Periparus ater</i>) with large, complex repertoires (21 distinct song types) and green-backed tits (<i>Parus monticolus</i>) with limited, simple repertoires (4 song types). Using playback experiments, we assessed behavioral responses to songs of familiar neighbors versus strangers. Coal tits exhibited robust discrimination, responding with significantly greater aggression (e.g., increased flight frequency within 5-meter radius of the nest box and closer approach distance to the speaker) to strangers, aligning with the dear enemy effect. In contrast, green-backed tits showed minimal and undifferentiated responses to both songs of familiar neighbors and strangers, indicating a lack of discrimination. These results demonstrate that the dear enemy effect is not universal and that vocal repertoire complexity plays a critical role in shaping individual recognition abilities. Our study underscores the importance of bioacoustics constrains in territorial behaviors and highlights how simplified vocal signals may limit the expression of complex social behaviors such as neighbor-stranger discrimination.
DOI: 10.5281/zenodo.17968970
title: Effector Repertoire of Salmonella T6SS - input datasets

description: Citation

Nicastro, G.G., Sibinelli-Sousa, S., Hespanhol, J.T., et al. (2025) Genome-directed study reveals the diversity of Salmonella T6SS effectors and identifies a novel family of lipid-targeting antibacterial toxins. bioRxiv.https://doi.org/10.1101/2024.09.27.615498

Description

Input data for analysis describes in our GitHub site and manuscript.
DOI: 10.34740/kaggle/dsv/14205810
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.6hppsr
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is b554c320-0560-11d8-b851-b8a03c50a862",
 "TaxonKey is Anolis barahonae"
 ]
}

 The dataset includes 101 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057585-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fbc8h
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Codakia tigerina, Codakia exasperata, Codakia tigrina, Codokia tigerina, Cytherea tigerina, Lucina exasperata, Lucina tigerina, Lucina tumida, Venus tigerina)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 46 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057586-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqrc7h
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ctena bella, Codakia bella, Epicodakia bella, Lucina bella, Lucina fibula, Lucina ramulosa)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 106 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057588-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17971604
title: Dataset Public Sentiment on MBG Program
DOI: 10.5281/zenodo.17971605
title: Dataset Public Sentiment on MBG Program
DOI: 10.15468/dl.gk6p3c
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palicourea gelsemiiflora"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057589-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qa3pfc
title: Occurrence Download

description: A dataset containing 1045 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Material citation, Specimen)",
 "Continent is one of (Africa, Asia, Oceania, Europe, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acanthoscelides obtectus"
 ]
}

 The dataset includes 1045 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057590-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q29bc6
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Okenia pellucida"
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057591-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhnyfw
title: Occurrence Download

description: A dataset containing 2549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Coordinate rounded",
 "OccurrenceStatus is Present",
 "TaxonKey is Elaeis",
 "Year 2015-2025"
 ]
}

 The dataset includes 2549 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057592-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uun6tn
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mycetaspis personata)"
 ]
}

 The dataset includes 73 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057593-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pyawrz
title: Occurrence Download

description: A dataset containing 26 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 2731881 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 2731881 OR CAST(occurrence.kingdomkey AS INTEGER) = 2731881 OR CAST(occurrence.phylumkey AS INTEGER) = 2731881 OR CAST(occurrence.classkey AS INTEGER) = 2731881 OR CAST(occurrence.orderkey AS INTEGER) = 2731881 OR CAST(occurrence.familykey AS INTEGER) = 2731881 OR CAST(occurrence.genuskey AS INTEGER) = 2731881 OR CAST(occurrence.specieskey AS INTEGER) = 2731881)
 AND (occurrence."year" &gt;= 2015 AND occurrence."year" &lt;= 2025)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 26 records were derived from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057584-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5phqsx
title: Occurrence Download

description: A dataset containing 486 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Divalinga quadrisulcata, Divalinga quadrisulcata transversa, Divaricella quadrisulcata, Lucina americana, Lucina divaricata, Lucina lamarcki, Lucina pilula, Lucina quadrisulcata)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 486 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057594-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5063/f1w66j82
title: Current environments and evolutionary history shape forest temporal assembly

description: Understanding the drivers of species temporal assembly is increasingly important, as climate change shifts the timing of species phenologies (life cycle events) globally. We performed a controlled environment study on the temperature and daylength cues driving woody plant budburst across North America. This dataset includes 47 species from four populations, two in eastern North America and two in western North America. Applying a phylogenetic Bayesian model we tested for species-level and community-level differences in cues responses and the effects of evolutionary history.
DOI: 10.15468/dl.w9w3su
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is b554c320-0560-11d8-b851-b8a03c50a862",
 "TaxonKey is Anolis ricordii"
 ]
}

 The dataset includes 316 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057595-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2ezvz
title: Occurrence Download

description: A dataset containing 1313502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fagus sylvatica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1313502 records from 2165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057575-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bue8u
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isatis gymnocarpa (Fisch. ex DC.) Al-Shehbaz, Moazzeni & Mummenhoff"
 ]
}

 The dataset includes 212 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152662-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vm4rx
title: Occurrence Download

description: A dataset containing 393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Anemia tomentosa (Savigny) Sw."
 ]
}

 The dataset includes 393 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014766-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5njxz
title: Occurrence Download

description: A dataset containing 28529 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachemys scripta elegans (Wied, 1838)"
 ]
}

 The dataset includes 28529 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059723-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvu62s
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buphthalmum speciosissimum L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 89 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058923-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hh39p9
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spheniscus magellanicus (J.R.Forster, 1781)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "DecimalLatitude is greater than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028604-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhmhzv
title: Occurrence Download

description: A dataset containing 2272580 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Consortium of California Herbaria"
 ]
}

 The dataset includes 2272580 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007123-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zaj5je
title: Occurrence Download

description: A dataset containing 368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pteropus conspicillatus Gould, 1850",
 "Year 2000-2022"
 ]
}

 The dataset includes 368 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058971-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.