cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/bpikbs
title: Evolution de l’abondance du thiof Epinephelus aeneus en Mauritanie

description: Le présent document décrit l’utilisation des modèles linéaires généralisés (GLM) pour la création d’indices d’abondance du stock de Thiof (Epinephelus aeneus / White Grouper) Senegalo / Mauritanien. Les modèles GLM permettent de prendre en compte les variations de protocole d’échantillonnage dans l’observation des captures des flottilles de pêche concernées. Les données utilisées proviennent, d’une part des campagnes scientifique démersales réalisées en Mauritanie depuis les années 1980, et d’autre part des données de captures et d’effort des pêcheries artisanales maritimes collectées en Mauritanie.
DOI: 10.57745/ceqtsu
title: Mise à jour de références produits sucrés pour Agribalyse®

description: Rapport décrivant les inventaires de 10 références de produits sucrés mises à jour sur la base de recommandations de l’Alliance 7 qui a pu collecter des informations auprès de ses adhérents.
DOI: 10.57745/cldjvq
title: A dataset of the geochemical composition of dredged marine sediments from harbors in southern France

description: The dataset is composed of geochemical and physicochemical results of 146 marine sediments wastes collected before dredging operations between 2010 and 2021. The sampling was designed to capture the large diversity of sediment distribution in harbors of southern France. Compositional parameters (dry matter, organic matter, total nitrogen, phosphorus, sulfate, chloride, trace metals and organics elements) were analyzed according to French AFNOR standards. This dataset covers a wide range of variability in the composition of dredged sediments, and is of great interest to researchers, managers of recycling companies, chemometricians, engineer and agronomists seeking references for the reuse of these wastes in a circular economy perspective.
DOI: 10.57745/d0r0q5
title: Dataset for the manuscript "Pharmacokinetic modeling of Sulfamethoxazole-Trimethoprim and Sulfadiazine-Trimethoprim combinations in broilers"

description: Dataset associated to the manuscript "Pharmacokinetic modeling of Sulfamethoxazole-Trimethoprim and Sulfadiazine-Trimethoprim combinations in broilers". The dataset contains all the data (e.g. observations, time, censoring...) used for the population modeling described in the manuscript. The column: - "ID corresponds to the individual (broiler) - "Time" corresponds to the sampling time - "Amount" corresponds to the amount of drug received - "Administration" and "Route" correspond to the administration route - "OCC" and "Week" correspond to the week of cross-over - "Observation" corresponds to the amount of drug dosed - "Censoring" and "Limit of quantification" correspond to the left censoring of the data - "Obs_ID" corresponds to the molecule studied - "Sampling and Injection events" corresponds to any events during the experiment
DOI: 10.57745/dihvsb
title: Agroclimatic conditions of summer mountain pastures in the French Alps

description: Le jeu de données UPMET-reanalysis permet de caractériser l’exposition climatique des alpages, c’est-à-dire le contexte climatique résultant des grandes influences climatiques ainsi que du microclimat auxquels chaque alpage est soumis. Ce jeu de données a été mobilisé dans une publication pour le journal Agronomy for Sustainable Development (https://doi.org/10.1007/s13593-022-00776-6). Il contient un ensemble d’indicateurs agroclimatiques calculés en croisant les données de la réanalyse climatique produite par Météo-France pour les territoires de montagne (téléchargeable depuis la plateforme AERIS https://doi.org/10.25326/37#v2020.2) avec les périmètres des alpages disponibles via l’enquête pastorale (2012-2014), qui est un recensement systématique des espaces d’alpages utilisés par l’élevage pastoral (https://enquete-pastorale.inrae.fr/). Les indicateurs agroclimatiques sont ainsi disponibles à l’échelle de l’alpage pour un ensemble de 2881 alpages des Alpes Françaises, à un pas de temps annuel (de 1960 à 2023). Ces indicateurs sont visualisables par le grand public via une interface web développée dans le cadre du programme Alpages Sentinelles pour la sensibilisation au changement climatique sur les alpages et l’accompagnement des acteurs (https://siddt.inrae.fr/module_webmapping/alpages-sentinelles/mapindic.php).
DOI: 10.57745/brgznj
title: Spatiotemporal quantification of sodium concentration in carrot

description: The images presented in this dataset are quantitative sodium MRI scans. They illustrate the methodological development described in the article published in Food Research International: "Spatiotemporal quantification of sodium concentration in food using magnetic resonance imaging." They demonstrate the effectiveness of RF B1⁺ field inhomogeneity correction on a homogeneous phantom. They also show the evolution of salt distribution in carrot over a 4.5-hour period following two salting methods: salting in water and surface salting with fleur de sel. Finally, the four spatiotemporal datasets shared here were used to build a diffusion model of sodium in this food product. The objectives of the scientific article were to present the development of a quantitative sodium MRI method that accounts for RF field inhomogeneities, in the specific context of an object in which sodium is diffusing. These data may be valuable to anyone interested in developing quantitative MRI methods. The data were acquired using the AgroResonance platform, as part of the Sal&Mieux project funded by the ANR (ANR-19-CE21-0009). The images are sodium nucleus MRI scans acquired at 9.4T, at room temperature. The sequence used is a Spiral, with a spatial resolution of 0.5×0.5×5 mm. All of this information is detailed in the article published in Food Research International: "Spatiotemporal quantification of sodium concentration in food using magnetic resonance imaging" https://doi.org/10.1016/j.foodres.2025.116416 .
DOI: 10.57745/bujort
title: Supplementation of biochar and trace elements to increase the resilience of food waste anaerobic digestion: a long-term study

description: This work investigated the effect of additives to sustain the mesophilic AD of FW as sole input. Successive AD batch reactors were conducted at lab-scale, a fraction of the digestate being re-circulated at the beginning of each batch and being fed with fresh substrate. Supplementation of trace elements as well as biochar at doses of 1% and 2% (w:w) was assayed. Addition of trace elements in VFA- and TAN-inhibited reactors had a fast-acting effect and improved the methane production rate. Supplementation in biochar resulted in improved methane yield, increased rate of VFA re‑consumption and prevention of acidosis, even at high TAN levels of more than 4 g/L. This positive biochar effect was linked to the selective enrichment of the archaea genus Methanoculleus, a syntrophic partner of VFA-oxidizing bacteria, together with a reduction of VFA-producing bacterial families such as Porphyromonadaceae.
DOI: 10.57745/c9nd50
title: Horses’ facial expressions in response to positive and negative anticipation

description: Data set of the research article "Horses’ facial expressions in response to positive and negative anticipation"
DOI: 10.57745/cgvzij
title: Thioacidolysis analysis of lignins

description: Lab-extracted organosolv lignins have been analysed using thioacidolysis. This dataset includes: - 1 file explaining the method; - 1 file summarizing the relative content of lignin monomers bound by β‐O‐4 linkages for all organosolv lignin samples.
DOI: 10.57745/diwswf
title: Source code of program to manage flight mills with Raspberry Pi (2024)

description: We built flight mills to estimate flight capacities of insects. The dataset includes the source code of the program used to manage them with a Raspberry Pi single board computer (Version 1 to 3). The program detects signals arriving at the device's GPIOs and logs the corresponding data in text files. It was mainly developed in Crystal language (https://crystal-lang.org/) on a personal computer running Linux operating system, and cross-compiled on it.
DOI: 10.57745/ba86fj
title: SicpaOpenData for PHP

description: The Sicpa_OpenData libraries allow to facilitate the publication of data to the INRAE dataverse in a transparent way 1/ by simplifying the creation of the metadata document from the data already present in the information systems, 2/ by simplifying the use of dataverse.org APIs. Available in the form of a PHAR file, the SicpaOpenData for PHP library can be used from all the developments of the PHP ecosystem
DOI: 10.57745/c5uq2x
title: Molecular dynamics data for UDG enzyme

description: UDG enzyme-MD simulation. Initially, the UDG enzyme was solvated using the TIP3P water model, and 0.15 M sodium and chloride ions were added to neutralize the system. Before running the production MD, minimization and equilibration steps were performed on the UDG enzyme. The final MD production run was conducted on the system for 500 ns to obtain a stable configuration. The 'input' folder contains the files necessary to run the simulation, while the 'output' folder contains the resulting trajectory.
DOI: 10.57745/cbvyq1
title: Decision support system for assessing the risk of wireworm infestation in maize field

description: Decision support system for assessing the risk of wireworm infestation in maize field. This is an R shiny application based on a Bayesian model.
DOI: 10.57745/cspvcj
title: Plan de gestion de données du projet "INCA-AAP-PLBIO-2022-214"

description: Plan de gestion de données pour le projet "Impact du système immunitaire sur les altérations génomiques et l’hétérogénéité intratumorale", du laboratoire des Dynamiques des Réponses Immunes à l'institut Pasteur de Paris (équipe de l'unité INSERM U1223). Projet financé en partie par l'Institut National Du Cancer (projet AAP PLBIO 2022-214). Les données seront issues d'expériences dans le cadre d'un modèle murin de lymphomes (microscopie, cytométrie de flux, séquençage d'exomes complets).
DOI: 10.57745/dbgrdi
title: Panoramas paysages Madagascar acquis par drone

description: Contexte : clichés réalisés dans le cadre de la mission terrain pour le projet CES-Paysage, APR CNES du 29/04 au 03/05/2022 Réalisation : Panoramas réalisées à partir d’acquisition drones (Parrot, Anafi) et assemblés en utilisant le logiciel Hugin © (logiciel gratuit, GNU General public licence, http://hugin.sourceforge.net/). Référent : samuel.alleaume@inrae.fr
DOI: 10.57745/dfkfyl
title: A dataset of classification and lexicon about food textures

description: This dataset includes a classification and a lexicon of food textures that can be used for generic purposes in food science.
DOI: 10.57745/dt1crp
title: Time-course data on leaf senescence in rosettes of 324 Arabidopsis thaliana natural accessions across 28 time points

description: This dataset contains time-course data on the progression of leaf senescence in the rosettes of 324 natural accessions of Arabidopsis thaliana. The senescence process was monitored over 28 distinct time points under controlled environmental conditions. Each time point captures the state of leaf senescence for the entire rosette, providing detailed insights into the variation of senescence patterns among the different accessions.
DOI: 10.57745/bzmpt9
title: A multidisciplinary on-farm survey of maize-bean intercropping shows that revival of traditional agricultural systems requires careful consideration of partner varieties and field management.

description: This directory contains additional tables and figures as well as the data used in the publication 'A multidisciplinary on-farm survey of maize-bean intercropping shows that the revival of traditional agricultural systems requires careful consideration of partner varieties and field management'.
DOI: 10.57745/cxnjkw
title: Functional annotation of the 42,980 protein-coding gene models of Cupressus sempervirens

description: To evaluate the accuracy of the 42,980 protein-coding sequences, we assigned a score between 0 and 1 to each protein using Psauron V1.0.4 (Sommer et al. 2024). Next, functional annotation was performed on the 42,980 predicted proteins using InterProScan v.5.64-96.0 (Quevillon et al. 2005) for domain and motif searches. We also used the BLASTKoala webservice (http://www.kegg.jp/blastkoala/, September 2024) (Kanehisa et al. 2016) to assign KEGG orthology based on KEGG pathways. The eggNOG-mapper V2.1.12 (Cantalapiedra et al. 2021) was used together with the eggNOG v5 genomes and functional databases of orthologs groups (OGs) (Huerta-Cepas et al., 2019). Finally, the Ensembl Enzyme Prediction Pipeline (E2P2) V.00de829 identified the enzyme codes associated with the 42,980 proteins (https://github.com/carnegie/E2P2) (Chae et al. 2014).
DOI: 10.57745/d28wfe
title: Plan de gestion de données du projet "CARtographie"

description: Plan de gestion de données pour le projet "CARtographie" ou "Impact des cellules CAR T sur l'hétérogénéité tumorale" du laboratoire des Dynamiques des Réponses Immunes à l'institut Pasteur de Paris (équipe de l'unité INSERM U1223). Projet financé en partie par le Cancéropôle Île-de-France (2022-1-EMERG-02-IP-1).
DOI: 10.57745/c5bmmi
title: Tree Economics Spectrum Dataset

description: Data for 24 functional traits for 90 angiosperm tree species from tropical, Mediterranean and temperate species
DOI: 10.57745/dsgppr
title: Environmental and social preferences for recreation of the local population of Vittel (France)

description: We present survey data about a Discrete Choice Experiment (DCE) implemented around the Vittel Impluvium between November 2019 and August 2020. This data include 673 questionnaires in the original database. Stata files are added to detail the treatment of incomplete questionnaires, missing IDs etc. Data includes socio-economic characteristics, the DCE, and follow-up questions. The data are described in the published paper : Amiri, T., Abildtrup, J., Garcia, S., Montagné-Huck, C. (2022). The impact of water protection measures in the Vittel impluvium on recreational values : A choice experiment with local residents. Revue française d’économie. Vol. XXXVII. pp. 145-204. DOI : 10.3917/rfe.222.0145
DOI: 10.57745/e33cxx
title: phenological scales of olive tree

description: The rdf modeling of the BBCH individual scale of olive tree fruit, created during the d2kab project. BBCH individual scale of olive treet is dedicated to one crop: olive tree.
DOI: 10.57745/egg6g4
title: Review of literature on genes involved in stress response in Campylobacter jejuni

description: The objective of this work was to inventory genes involved in stress response in Campylobacter jejuni by an exhaustive literature review. This work was performed in 2018 during the project BIOMICS, funded by Région Pays de la Loire, France. The authours are: Benjamin Duqué, Sandrine Rezé, Jeanne-Marie-Membré, Sandrine Guillou, Nabila Haddad of Oniris, INRAE, UMR SECALIM, Nantes, France.
DOI: 10.57745/d38tfs
title: Multigenerational analysis of thermal manipulation of Japanese quail

description: This dataset contains the raw phenotypic data of the ANR project "QuailHeatE" collected during 7 generations (G1-G7). This dataset is associated with a publication entitled "Thermal conditioning of quail embryos has transgenerational and reversible long-term effects" J Anim Sci Biotechnol. 2023 Oct 3;14(1):124. doi: 10.1186/s40104-023-00924-2.
DOI: 10.57745/d7i0aq
title: RPG complété 2021 Région Bourgogne

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de la région Bourgogne (21, 58, 71, 89). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023.
DOI: 10.57745/dekaah
title: Questionnaire Part-O

description: Questionnaire permettant d'évaluer la participation sociale des personnes victimes d'un traumatisme crânien à l'âge adulte.
DOI: 10.57745/df8unh
title: Dataset of protein signatures of feed restriction and spontaneous lipolysis in skimmed ewe’s milk

description: Results from the statistical analysis of zootehnics, proteomics and lipidomics data from dairy ewes milks with high or low lipolysis
DOI: 10.57745/e1chqq
title: Interactome data for ASFV proteins (E199L, E248R, P34 and MGF360-15R)

description: This is the interactome data for ASFV BA71 proteins (E199L, E248R, P34 and MGF360-15R).
DOI: 10.57745/cxotkd
title: Corpus textuel de l'étude des controverses soulevées par la vente des gravats de Hao (Polynésie française) à Rikitea

description: Cette base de données rassemble un corpus textuel concernant la controverse sur la vente de gravats et de ferrailles issus de la déconstruction de l’ancienne base militaire de Hao (Polynésie française). Ce corpus est constitué d’articles issus de cinq médias polynésiens. On trouvera ici un tableur contenant les métadonnées des articles ainsi qu’un fichier texte rassemblant le corpus.
DOI: 10.57745/dh0bft
title: Replication database for the following article: Autobiographical reasoning in AUD patients: A life story perspective

description: The present database includes all data used in the paper Autobiographical reasoning in AUD patients: A life narrative perspective This study explored how AUD individuals reflect on their past life experiences and integrate them into their sense of self through the analysis of life stories. We analyzed the life stories of 37 recently detoxified AUD patients and compared them to those of 34 individuals without alcohol-related issues. More precisely, the narrative coherence was analyzed using the method developed by Habermas and colleagues.
DOI: 10.57745/dpedbw
title: antismash_scripts

description: Scripts to perform antiSMASH v7.1 analysis of bacterial and fungal genomes.
DOI: 10.57745/enjadk
title: Bilinear magnetoresistance in HgTe topological insulator: opposite signs at opposite surfaces demonstrated by gate control

description: DATASET associated to the figure of the paper entitled : Bilinear magnetoresistance in HgTe topological insulator: opposite signs at opposite surfaces demonstrated by gate control. README file describe the data associated to each figure.
DOI: 10.57745/chcr3f
title: ISO-seq Minc transcripts containing the repeat and matching the genome

description: We used the publicly available data of IsoSeq sequencing of Meloidogyne incognita (available under NCBI accessions PRJNA787737, SRP350177. The data were obtained using a mix of M. incognita developmental stages of. We searched for presence of telomeric motifs in the ISO-seq reads. We mapped the motif-containing ISO-seq reads to the reference genome of M. incognita using GMAP with default parameters. A summary of the mapping results is provided here.
DOI: 10.57745/cy06ye
title: Distribution of G4s and Mare repeats on M. arenaria contigs

description: The density of Mare composite repeats per 100kb window is represented by a color gradient with positive values (red) indicating a density in the sense strand and negative values (blue) indicating a density on the reverse complement strand. Gray triangles above bars indicate regions of the contigs where less than 100% of the repeats are on the same strand. The heights of bars in the histogram represent the density of G4-quadruplex forming regions in the same windows.
DOI: 10.57745/dhxxbc
title: Simulation data with the demo-genetic forest model Luberon2: random thinning and disturbance scenarios in Cedrus atlantica

description: The data are linked to a research article published in Evolutionary Applications (2023) by Claire Godineau, Victor Fririon, Nicolas Beudez, François de Coligny, François Courbet, Gauthier Ligot, Sylvie Oddou-Muratorio, Leopoldo Sanchez and François Lefèvre (https://doi.org/10.1111/eva.13606). Any reuse of the data must cite the research article: see full reference for citation in the metadata of this archive. The research investigates how silviculture reduces natural density-dependent selection in tree populations. The data contain a full factorial design simulation plan with the demo-genetic forest model Luberon2 combining 11 genetic backgrounds, 7 silvicultural scenarios and 3 disturbance regimes resulting in 231 scenarios that were replicated 10 times, i.e. 2310 simulation runs in total. The archive includes all necessary elements to reproduce the research: (i) a stand alone version of the model; (ii) the input and output files of the simulations presented in the publication; (iii) the R scripts used to analyze the simulation outputs and reproduce the figures presented in the publication.
DOI: 10.57745/egis5e
title: Dataset_1&gt; Data associated to “Two human milk-like synthetic bacterial communities displayed contrasted impacts on gut barrier and immune responses in an intestinal quadricellular model” by Charles Le Bras, Lucie Rault, Nolwenn Jacquet, Nathalie Daniel, Victoria Chuat, Florence Valence, Amandine Bellanger, Latifa Bousarghin, Sophie Blat, Yves Le Loir, Isabelle Le Huërou-Luron, Sergine Even

description: This dataset includes data associated to “Two human milk-like synthetic bacterial communities displayed contrasted impacts on gut barrier and immune responses in an intestinal quadricellular model” by Charles Le Bras et al.,
DOI: 10.57745/enysov
title: Data used in the paper Humid Evolution of Haze in the Atmosphere of Super-Earths in the Habitable Zone

description: Experimental and numerical data used for Figures of the paper Humid Evolution of Haze in the Atmosphere of Super-Earths in the Habitable Zone. This dataset is composed of five files of experimental data.
DOI: 10.57745/f6230v
title: FSOV PrediCropt

description: Données projet FSOV PrediCropt
DOI: 10.57745/da0eqd
title: Duck feeding behaviour data for foie gras production

description: Fichiers de données de comportement alimentaire mesurées sur 3 populations impliquées dans la production de foie gras : le canard mulard et ses deux populations parentales (canard de Barbarie et canard Pékin). Dans les populations parentales on trouvera des données de comportement alimentaire, de croissance (gain moyen quotidien) et d'efficacité alimentaire (indice de conversion en 2 mesures de la consommation résiduelle, prenant ou non en compte l'adiposité de l'animal). Le fichier mulard contient en outre des mesures de découpe, de poids de foie gras et de rendement technologique du foie. Ces fichiers de données sont associés à un fichier de pedigree et à un fichier de paramètres pour estimer les paramètres génétiques à l'aide du logiciel ASReml. Un tableur contient également la nomenclature ATOL des caractères.
DOI: 10.57745/ddsubd
title: Chantilly - Restitution aux bénévoles - 2023

description: 2 ième présentation faite au collectif de bénévoles sur les activités de recherches réalisées sur la forêt de ChantillyPrésentation faite au collectif des bénévoles
DOI: 10.57745/dgigf0
title: Microorganisms growth

description: Microorganisms growth data expressed as colony-forming unit per g of cheese.
DOI: 10.57745/dub7et
title: Thermogravimetric analysis (TGA) of lignins

description: Lab-extracted organosolv lignins have been analysed using thermogravimetric analysis. This dataset includes: - 1 file explaining the method; - 1 file summarizing the degradation temperatures for all organosolv lignin samples - TGA thermograms in .CSV format (one per lignin sample).
DOI: 10.57745/dv7ut8
title: IPMWorks H2020 No. 101000339 - IPM Biofortification Strategy 2021-2022 protocol

description: IPMWorks H2020 No. 101000339 – IPM Biofortification Strategy 2021-2022 protocol contains instructions provided to advisory hub coaches and farmers for gathering appropriate data as part of the case study. This includes information on the layout of the field, identification of areas in the field to be treated differently, assessments to gather data on differences between treatment strategies and instructions to collect yield data.