cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1023408.09fu
title: SH1023408.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1023409.09fu
title: SH1023409.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1023410.09fu
title: SH1023410.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1023411.09fu
title: SH1023411.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1023412.09fu
title: SH1023412.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1023413.09fu
title: SH1023413.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.12960651.v1
title: Additional file 4 of Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark

description: Additional file 4. Histone modifications in the globular domain and prediction of their effect on DNA accessibility.
DOI: 10.6084/m9.figshare.12960654.v1
title: Additional file 5 of Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark

description: Additional file 5. Quantification of the proteomic analysis of histone modifications.
DOI: 10.6084/m9.figshare.12960645
title: Additional file 2 of Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark

description: Additional file 2. Sporulation data for s288c and SK1 backgrounds.
DOI: 10.6084/m9.figshare.12960651
title: Additional file 4 of Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark

description: Additional file 4. Histone modifications in the globular domain and prediction of their effect on DNA accessibility.
DOI: 10.6084/m9.figshare.12960663
title: Additional file 10 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 10: Figure S10. Effect size of CdM on right ventricular hypertrophy by disease (a), source (b), dose (c), and route (d). Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960666
title: Additional file 11 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 11: Figure S11. Effect size of CdM on lung fibrosis by disease (a), source (b), dose (c), and route (d). Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960666.v1
title: Additional file 11 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 11: Figure S11. Effect size of CdM on lung fibrosis by disease (a), source (b), dose (c), and route (d). Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960669
title: Additional file 12 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 12: Figure S12. Effect size of CdM on pulmonary vascularization by disease (a), source (b), dose (c), and route (d). Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960669.v1
title: Additional file 12 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 12: Figure S12. Effect size of CdM on pulmonary vascularization by disease (a), source (b), dose (c), and route (d). Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960663.v1
title: Additional file 10 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 10: Figure S10. Effect size of CdM on right ventricular hypertrophy by disease (a), source (b), dose (c), and route (d). Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960729
title: Additional file 9 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 9: Figure S9. Effect size of CdM on lung alveolarization by disease (a), source (b), dose (c), and route (d). Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960729.v1
title: Additional file 9 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 9: Figure S9. Effect size of CdM on lung alveolarization by disease (a), source (b), dose (c), and route (d). Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960726.v1
title: Additional file 8 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 8: Figure S8. Effect size of CdM (a), MSCs (b), and CdM vs. MSC (c) on all eight outcomes. Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960726
title: Additional file 8 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

description: Additional file 8: Figure S8. Effect size of CdM (a), MSCs (b), and CdM vs. MSC (c) on all eight outcomes. Forest plots demonstrate SMD with 95% confidence interval.
DOI: 10.6084/m9.figshare.12960737
title: Additional file 2 of Seagull: lasso, group lasso and sparse-group lasso regularization for linear regression models via proximal gradient descent

description: Additional file 2. An R script for the analysis of the processed data to generate Fig. 1.
DOI: 10.6084/m9.figshare.12960737.v1
title: Additional file 2 of Seagull: lasso, group lasso and sparse-group lasso regularization for linear regression models via proximal gradient descent

description: Additional file 2. An R script for the analysis of the processed data to generate Fig. 1.
DOI: 10.6084/m9.figshare.12960740
title: Additional file 3 of Seagull: lasso, group lasso and sparse-group lasso regularization for linear regression models via proximal gradient descent

description: Additional file 3. An R script for performing an exemplary genome-wide association study.
DOI: 10.6084/m9.figshare.12960740.v1
title: Additional file 3 of Seagull: lasso, group lasso and sparse-group lasso regularization for linear regression models via proximal gradient descent

description: Additional file 3. An R script for performing an exemplary genome-wide association study.
DOI: 10.6084/m9.figshare.12960734
title: Additional file 1 of Seagull: lasso, group lasso and sparse-group lasso regularization for linear regression models via proximal gradient descent

description: Additional file 1. An R script for downloading and processing the methylation data used in this study.
DOI: 10.6084/m9.figshare.12960734.v1
title: Additional file 1 of Seagull: lasso, group lasso and sparse-group lasso regularization for linear regression models via proximal gradient descent

description: Additional file 1. An R script for downloading and processing the methylation data used in this study.
DOI: 10.6084/m9.figshare.12960806
title: Additional file 8 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 8. Sequence of β-amyrin synthase (EpBAS) gene in Entada phaseoloides.
DOI: 10.6084/m9.figshare.12960803.v1
title: Additional file 7 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 7. DEGs in different tissues.
DOI: 10.6084/m9.figshare.12960803
title: Additional file 7 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 7. DEGs in different tissues.
DOI: 10.6084/m9.figshare.12960791.v1
title: Additional file 3 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 3. Functional annotation of Entada phaseoloides unigenes.
DOI: 10.6084/m9.figshare.12960797.v1
title: Additional file 5 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 5. GO enrichment of unigenes.
DOI: 10.6084/m9.figshare.12960797
title: Additional file 5 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 5. GO enrichment of unigenes.
DOI: 10.6084/m9.figshare.12960800
title: Additional file 6 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 6. Unigenes for KEGG analysis.
DOI: 10.6084/m9.figshare.12960791
title: Additional file 3 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 3. Functional annotation of Entada phaseoloides unigenes.
DOI: 10.6084/m9.figshare.12960806.v1
title: Additional file 8 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 8. Sequence of β-amyrin synthase (EpBAS) gene in Entada phaseoloides.
DOI: 10.6084/m9.figshare.12960800.v1
title: Additional file 6 of Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

description: Additional file 6. Unigenes for KEGG analysis.
DOI: 10.6084/m9.figshare.12960827
title: Additional file 1 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 1: Table S1. Adapted Online Mendelian Inheritance in Animals (OMIA) list of reported inherited forms of short stature (or dwarfism) in cattle, sheep, a goat, horses, pigs, rabbits, dogs, a cat, chickens, Japanese quail and a Sumatran tiger with the associated OMIA ID.
DOI: 10.6084/m9.figshare.12960830
title: Additional file 2 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 2: Table S2. List of genes identified in the region flanked by SNPs s50915 and s40177 corresponding to positions OAR2:g.220083076–221052836 on the Oar_v3.1 genome assembly.
DOI: 10.6084/m9.figshare.12960827.v1
title: Additional file 1 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 1: Table S1. Adapted Online Mendelian Inheritance in Animals (OMIA) list of reported inherited forms of short stature (or dwarfism) in cattle, sheep, a goat, horses, pigs, rabbits, dogs, a cat, chickens, Japanese quail and a Sumatran tiger with the associated OMIA ID.
DOI: 10.6084/m9.figshare.12960833.v1
title: Additional file 3 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 3: Table S3. Top eight protein coding positional candidate genes identified in the OAR2:g.220083076–221052836 region on the Oar_v3.1 genome assembly.
DOI: 10.6084/m9.figshare.12960830.v1
title: Additional file 2 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 2: Table S2. List of genes identified in the region flanked by SNPs s50915 and s40177 corresponding to positions OAR2:g.220083076–221052836 on the Oar_v3.1 genome assembly.
DOI: 10.6084/m9.figshare.12960839.v1
title: Additional file 5 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 5: Table S5. Gene list obtained from Mouse Genome Informatics (MGI) with PubMed literature counts identifying genes causing similar phenotypes to BCRHS.
DOI: 10.6084/m9.figshare.12960833
title: Additional file 3 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 3: Table S3. Top eight protein coding positional candidate genes identified in the OAR2:g.220083076–221052836 region on the Oar_v3.1 genome assembly.
DOI: 10.6084/m9.figshare.12960836
title: Additional file 4 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 4: Table S4. List of 103 private whole genome sequencing variants identified in an affected lamb (BCRHS3) after filtering based on segregation, predicted protein impact, removal of known SNPs and duplicates.
DOI: 10.6084/m9.figshare.12960839
title: Additional file 5 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 5: Table S5. Gene list obtained from Mouse Genome Informatics (MGI) with PubMed literature counts identifying genes causing similar phenotypes to BCRHS.
DOI: 10.6084/m9.figshare.12960836.v1
title: Additional file 4 of Molecular basis of a new ovine model for human 3M syndrome-2

description: Additional file 4: Table S4. List of 103 private whole genome sequencing variants identified in an affected lamb (BCRHS3) after filtering based on segregation, predicted protein impact, removal of known SNPs and duplicates.
DOI: 10.6084/m9.figshare.12960869.v1
title: Additional file 11 of Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial

description: Additional file 11 Table S6. Absolute number of Escherichia coli per gram of feces in all samples, estimated by Escherichia-specific quantitative PCR.
DOI: 10.6084/m9.figshare.12960893.v1
title: Additional file 8 of Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial

description: Additional file 8 Table S5. List of the Spearman’s rank correlation coefficients between genera found in calves’ feces and the dose of milk powder estimated for farms B and C. The genera with a significant positive correlation and a Bonferroni corrected p-value
DOI: 10.6084/m9.figshare.12960884.v1
title: Additional file 5 of Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial

description: Additional file 5 Table S1. OTUs detected in or absent from previous samples and shared by calves over time. The sampling, ranges of proportions of calves, and OTU taxonomies are presented in each layer. The lists of OTUs consist of (a) OTUs simultaneously detected in two consecutive samples in more than 25% of the calves, (b) OTUs that were not previously detected and that simultaneously appeared in more than 25% of the calves, and (c) OTUs that were simultaneously lost by more than 25% of the calves.
DOI: 10.6084/m9.figshare.12960884
title: Additional file 5 of Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial

description: Additional file 5 Table S1. OTUs detected in or absent from previous samples and shared by calves over time. The sampling, ranges of proportions of calves, and OTU taxonomies are presented in each layer. The lists of OTUs consist of (a) OTUs simultaneously detected in two consecutive samples in more than 25% of the calves, (b) OTUs that were not previously detected and that simultaneously appeared in more than 25% of the calves, and (c) OTUs that were simultaneously lost by more than 25% of the calves.
DOI: 10.6084/m9.figshare.12960893
title: Additional file 8 of Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial

description: Additional file 8 Table S5. List of the Spearman’s rank correlation coefficients between genera found in calves’ feces and the dose of milk powder estimated for farms B and C. The genera with a significant positive correlation and a Bonferroni corrected p-value
DOI: 10.6084/m9.figshare.12960869
title: Additional file 11 of Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial

description: Additional file 11 Table S6. Absolute number of Escherichia coli per gram of feces in all samples, estimated by Escherichia-specific quantitative PCR.
DOI: 10.6084/m9.figshare.12960906.v1
title: Additional file 1 of Gametophyte and embryonic ontogeny: understanding the reproductive calendar of Cypripedium japonicum Thunb. (Cypripedoideae, Orchidaceae), a lady’s slipper orchid endemic to East Asia

description: Additional file 1 Sampling time with respective developmental stages of Cypripedium japonicum. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.12960914
title: Additional file 3 of Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

description: Additional file 3: Table S2. Lists of CTCF ChIP-seq datasets in cancer cell lines and corresponding normal tissues for identification of cancer-specific CTCF binding sites.
DOI: 10.6084/m9.figshare.12960911.v1
title: Additional file 2 of Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

description: Additional file 2: Table S1. List of collected CTCF ChIP-seq datasets.