cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7954756
title: Dataset related to the publication by Pan et al.: A randomized clinical trial of two-staged tourniquet strategy for total knee arthroplasty

description: Dataset related to the publication by Pan et al. 2023. A randomized clinical trial of two-staged tourniquet strategy for total knee arthroplasty
DOI: 10.5281/zenodo.7954755
title: Dataset related to the publication by Pan et al.: A randomized clinical trial of two-staged tourniquet strategy for total knee arthroplasty

description: Dataset related to the publication by Pan et al. 2023. A randomized clinical trial of two-staged tourniquet strategy for total knee arthroplasty
DOI: 10.5519/qd.lvabg6l7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.8036859
title: To share or not to share: DNA metabarcoding reveals trophic niche overlap between sympatric trawling bats.

description: All genetic sequences used in the scientific paper entiteled "To share or not to share: DNA metabarcoding reveals trophic niche overlap between sympatric trawling bats".
DOI: 10.5281/zenodo.8036858
title: To share or not to share: DNA metabarcoding reveals trophic niche overlap between sympatric trawling bats.

description: All genetic sequences used in the scientific paper entiteled "To share or not to share: DNA metabarcoding reveals trophic niche overlap between sympatric trawling bats".
DOI: 10.6084/m9.figshare.23514458.v1
title: Introduction

description: A spreadsheet tabulation of identified sequences and lithostratigraphic units (depths and thicknesses) in wells referenced in this Memoir in MS Excel format.
DOI: 10.6084/m9.figshare.23514458
title: Introduction

description: A spreadsheet tabulation of identified sequences and lithostratigraphic units (depths and thicknesses) in wells referenced in this Memoir in MS Excel format.
DOI: 10.5281/zenodo.8034042
title: Archivos CSV

description: Archivos CSV generados con el programa de reconstrucción fonética.
DOI: 10.5281/zenodo.8034041
title: Archivos CSV

description: Archivos CSV generados con el programa de reconstrucción fonética.
DOI: 10.5281/zenodo.7982969
title: TRANSCRIPT drug repurposing dataset

description: Version 2.0.0 (05/29/2023) This is a drug repurposing dataset under MIT licence, compiled by Dr. Clémence Réda &lt;clemence.reda@uni-rostock.de&gt; at Universität Rostock, comprising a drug-disease association matrix, and several drug-drug and disease-disease similarity matrices. It only uses transcriptomic data (i.e., gene activity/expression). The sparsity number is the percentage of nonzero values in the association matrix. # drugs | # diseases | Sparsity number | # positive associations | # negative associations | # genes<br> ------- | ---------- | --------------- | ----------------------- | ----------------------- | -------<br> 204 | 116 | 0.44% | 401 | 11 | 12,096 All drugs (resp., diseases) are associated with a gene expression feature vector of length 12,096 (that is, all drugs and diseases in the feature matrices appear in the association matrix, and vice versa). ---------- This dataset consists of three .CSV files: * Drug-Disease Association Matrix 1. "ratings_mat.csv" This matrix contains values in {-1,0,1} where -1 stands for a negative association (i.e., the drug failed for some reason to treat the considered disease: e.g., lack of accrual in the associated clinical trial, or proven toxicity), 1 for a positive association (i.e., the drug was shown to treat the disease), and 0 for unknown associated status. The columns are diseases, identified by their MedGen Concept ID, whereas rows are drugs, identified by their DrugBank IDs or PubChem CIDs. * Drug Feature Matrix 1. "items.csv" This matrix has drugs in its columns, identified by their DrugBank IDs or PubChem CIDs, and genes in its rows, identified by their HUGO Gene Symbol. Genewise transcriptomic variation induced by drug treatment, from the CREEDS or the LINCS L1000 databases. * Disease Feature Matrix 1. "users.csv" This matrix has diseases in its columns, identified by their MedGen Concept IDs, and genes in its rows, identified by their HUGO Gene Symbol. Genewise transcriptomic variation induced by the disease, from the CREEDS database. ---------- Further information about the generation of those matrices is available by running the Jupyter notebook TRANSCRIPT_dataset.ipynb on the following GitHub repository: https://github.com/RECeSS-EU-Project/drug-repurposing-datasets. For any questions, please contact the author at &lt;clemence.reda@uni-rostock.de&gt; or the RECeSS project contributors at &lt;recess-project@proton.me&gt;.
DOI: 10.5281/zenodo.7982970
title: TRANSCRIPT drug repurposing dataset

description: Version 1.0.0 (12/28/2022) This is a drug repurposing dataset under MIT licence, compiled by Dr. Clémence Réda &lt;clemence.reda@uni-rostock.de&gt;, comprising a drug-disease association matrix, and several drug-drug and disease-disease similarity matrices. It only uses transcriptomic data (i.e., gene activity/expression). The sparsity number is the percentage of nonzero values in the association matrix. # drugs | # diseases | Sparsity number | # positive associations | # negative associations | # genes<br> ------- | ---------- | --------------- | ----------------------- | ----------------------- | -------<br> 871 | 144 | 0.76% | 773 | 181 | 10,811 All drugs (resp., diseases) are associated with a gene expression feature vector of length 10,811 (that is, all drugs and diseases in the feature matrices appear in the association matrix, and vice versa). However, some diseases/drugs are not necessarily involved in negative or positive associations (meaning that all pairs with those items have an association value of 0). ---------- This dataset consists of three .CSV files: * Drug-Disease Association Matrix 1. "ratings_mat.csv" This matrix contains values in {-1,0,1} where -1 stands for a negative association (i.e., the drug failed for some reason to treat the considered disease: e.g., lack of accrual in the associated clinical trial, or proven toxicity), 1 for a positive association (i.e., the drug was shown to treat the disease), and 0 for unknown associated status. The columns are diseases, identified by their MedGen Concept ID, whereas rows are drugs, identified by their DrugBank IDs or PubChem CIDs. * Drug Feature Matrix 1. "items.csv" This matrix has drugs in its columns, identified by their DrugBank IDs or PubChem CIDs, and genes in its rows, identified by their HUGO Gene Symbol. Genewise transcriptomic variation induced by drug treatment, from the CREEDS or the LINCS L1000 databases. * Disease Feature Matrix 1. "users.csv" This matrix has diseases in its columns, identified by their MedGen Concept IDs, and genes in its rows, identified by their HUGO Gene Symbol. Genewise transcriptomic variation induced by the disease, from the CREEDS database. ---------- Further information about the generation of those matrices is available by running the Jupyter notebook TRANSCRIPT_dataset-v1.0.0.ipynb on the following GitHub repository: https://github.com/RECeSS-EU-Project/drug-repurposing-datasets. For any questions, please contact the author at &lt;clemence.reda@uni-rostock.de&gt; or the RECeSS project contributors at &lt;recess-project@proton.me&gt;.
DOI: 10.5281/zenodo.7982976
title: TRANSCRIPT drug repurposing dataset

description: Version 2.0.0 (05/29/2023) This is a drug repurposing dataset under MIT licence, compiled by Dr. Clémence Réda &lt;clemence.reda@uni-rostock.de&gt; at Universität Rostock, comprising a drug-disease association matrix, and several drug-drug and disease-disease similarity matrices. It only uses transcriptomic data (i.e., gene activity/expression). The sparsity number is the percentage of nonzero values in the association matrix. # drugs | # diseases | Sparsity number | # positive associations | # negative associations | # genes<br> ------- | ---------- | --------------- | ----------------------- | ----------------------- | -------<br> 204 | 116 | 0.44% | 401 | 11 | 12,096 All drugs (resp., diseases) are associated with a gene expression feature vector of length 12,096 (that is, all drugs and diseases in the feature matrices appear in the association matrix, and vice versa). ---------- This dataset consists of three .CSV files: * Drug-Disease Association Matrix 1. "ratings_mat.csv" This matrix contains values in {-1,0,1} where -1 stands for a negative association (i.e., the drug failed for some reason to treat the considered disease: e.g., lack of accrual in the associated clinical trial, or proven toxicity), 1 for a positive association (i.e., the drug was shown to treat the disease), and 0 for unknown associated status. The columns are diseases, identified by their MedGen Concept ID, whereas rows are drugs, identified by their DrugBank IDs or PubChem CIDs. * Drug Feature Matrix 1. "items.csv" This matrix has drugs in its columns, identified by their DrugBank IDs or PubChem CIDs, and genes in its rows, identified by their HUGO Gene Symbol. Genewise transcriptomic variation induced by drug treatment, from the CREEDS or the LINCS L1000 databases. * Disease Feature Matrix 1. "users.csv" This matrix has diseases in its columns, identified by their MedGen Concept IDs, and genes in its rows, identified by their HUGO Gene Symbol. Genewise transcriptomic variation induced by the disease, from the CREEDS database. ---------- Further information about the generation of those matrices is available by running the Jupyter notebook TRANSCRIPT_dataset.ipynb on the following GitHub repository: https://github.com/RECeSS-EU-Project/drug-repurposing-datasets. For any questions, please contact the author at &lt;clemence.reda@uni-rostock.de&gt; or the RECeSS project contributors at &lt;recess-project@proton.me&gt;.
DOI: 10.48758/ufz.12625
title: Eddy covariance rawdata from grassland site 'Am Grossen Bruch' (DE-GsB) in Central Germany for September 2015 (201509)

description: eddy covariance raw data (20Hz) from Am Grossen Bruch (Grosses Bruch) in 2.3m height, acquisition of CSAT3, LI7500 and LI7700 with eddymeas, converted from slt- and dia-files to ascii-format (u, v, w, T_Sonic, CO2, H2O, p_75, CH4, P_77, T_77, SA_DIAG, GA75_DIAG, GA77_DIAG_a, GA77_DIA_b), no time column, individual file names are indicating the starting time of the data acquisition period (according to RFlux-requirements)

sonic alignment: 280 deg
IRGA: LI75H-1600

Am Grossen Bruch DoY 244-273 (September 2015)

file: DE-GsB_201509_eddy-raw_csv.zip
DOI: 10.5281/zenodo.7945349
title: Nighttime geomagnetic response to jumps of solar wind dynamic pressure: A possible cause of Québec blackout in March 1989

description: This contains the original simulation data used by the paper 'Nighttime geomagnetic response to jumps of solar wind dynamic pressure: A possible cause of Québec blackout in March 1989', which will appear in Space Weather. The data were obtained by the global MHD simulation (REPPU). Each sav file (IDL saveset format) contains the physical variables in the ionosphere at each grid point (mlt*mlat: 321*221, starting at 0 MLT and -90 MLAT) for Run 02n, 30n, 30s, 33n, and 33s, including MHD time series ('time' in minutes), field-aligned current ('fac1' in A/m2), electric potential ('pot' in V), ionospheric conductivities ('ss11', 'ss12', and 'ss22' in S). The sav file can be opened by IDL. By typing, for example,<br> IDL&gt; restore,'run02n.sav'<br> you can load the file to the memory of IDL. Type 'help' to confirm the variables that are loaded.
DOI: 10.6084/m9.figshare.23514411
title: Pupil data

description: PEEG_EEG* : individual participant folder. - run*calibration_output.tsv: calibration summary - run*expdata.tsv: raw tobii data (40Hz) - size data collected every 3rd, gaze data at 120Hz - run*markers.tsv: event marker file <br> --- PupCor_output: blink interoplated data (using https://github.com/lindvoo/PupCor). - *_raw_pup_Right.txt: raw pupil size (Right eye) - *_int_pup.txt: linearly interpolated data (Right eye) - *_sm_int_pup.txt: linearly interpolated data with minimal smoothing (Right eye)
DOI: 10.6084/m9.figshare.23509143
title: EEG data

description: BDF files containing EEG data from start of experiment to end of experiment. event markers contained in file.
DOI: 10.18112/openneuro.ds004499.v1.0.0
title: Multi-echo simultaneous multislice fMRI dataset: Effect of acquisition parameters on fMRI data
DOI: 10.25345/c5tx35h1p
title: MassIVE MSV000092156 - DIA dataset showing positional isomers.
title: DIA dataset showing positional isomers. MCF-7 cells were lysed, digested with trypsin, and phospho-enriched using IMAC Fe beads. DIA measurements were made from 500 to 1000 m/z using 20 m/z staggered windows. Sample prep and DIA measurements were acquired using the protocol described in Lawrence RT, Searle BC, Llovet A, Villen J. Nat Methods. 2016 May;13(5):431-4.
DOI: 10.18712/nsd-nsd1876-3-v3
title: Accessibility to Health Services Among People With Disabilities in Southern Africa, 2009 - 3

description: This research project studies the availability and accessibility of health services to people with disabilities and the degree of inclusion of people with disabilities in health service delivery in South Africa and Malawi. The project aims to strengthen and expand research that can contribute to equalisation of opportunities for people with disabilities and the sustainable improvements in the health and well-being of this group of people, in particular women and children with disabilities and children with disabled mothers. By focusing on people with disabilities in these countries the project is targeting an often neglected and vulnerable sub-population. 

The project comprises two complementary studies:
1. Difficulties faced by disabled people in poor communities when Accessing Health Services - an anthropological study (The DAHS study). The study will focus on the users of health services from the point of view of people with disabilities and their families. The study employs an anthropological approach in gathering data concerning peoples knowledge, experiences and practises with respect to health and access to health services. 
2. Study of knowledge, attitudes and practices among health service users and providers (KAP study). In order to achieve this elucidation, two complimentary but different approaches were utilised: Users knowledge, attitudes and practices with respect to health and health services were assessed through a comparative survey to include both people with and without disabilities. The knowledge, attitudes and practices of health service providers were approached through the use of qualitative individual and/or group interviews.
DOI: 10.18712/nsd-nsd1929-2-v2
title: Survey on Achievements in School for Hearing Impaired Pupils - Registry Group

description: Skådalen competence center (Statped) received in 2008 a commission by the Directorate of Education to determine how hearing impaired children are doing in school. Statistics Norway (SSB) was commissioned to collect birth and social security number of the current student group from hearing centers. The proejct also included the connection of character data and selected background information from registers and sending out questionnaires to parents and contact teachers for primary school students.

It was decided to conduct a census of children and young people born between 1.1.1989-31.12.2002, diagnosed with hearing impairment (simplex or duplex) or who were deaf. In addition, the children and young people should have been recommended a hearing aid technology (hearing aid or cochlear implant) and/or use sign language. This group is fully registered with hearing centers in Norway.

For those who were born between 1.1.1989-31.12.1993, it was decided to only implement a register-based character collection (registry group). For the second group, born 1.1.1994-31.12 2002 should conduct a questionnaire survey combined with register data (survey group).
DOI: 10.18712/nsd-nsd1941-1-v2
title: Media Systems, News Content and Public Perception of Political Reality - Phone Survey Norway & USA, 2009

description: Public opinion constitutes one of the cornerstones of democracy. Citizens are assumed to hold preferences for particular polices, know where parties and candidates for office are located on the relevant policy dimensions, and cast their votes accordingly. In other words: Democracy functions best when its citizens are politically informed. In order to express attitudes and act according to their self-interest, citizens need relevant and up to date information about current affairs. In many respects, political relevant information is more widely available now than at any time in history. However, several scholars have questioned the quality and the form of information provided by the news media. A central hypothesis in this project is that media systems matter for the information available to the public. How commercial and public broadcasting is organised within a country, or the relative importance of newspapers to television, are all factors that can influence the information provided by the news media, and thus the potential effect on the public. The overall purpose of this project is to study the information given by the news media to the public, and how this information influences public's knowledge and perception of political reality. 

The data set consists of a telephone survey on media use, public peceptions and political knowledge among residents in Norway and the U.S.
DOI: 10.18712/nsd-nsd2368-v2
title: Polymorphisms in the Vitamin D System and Health, 2013

description: Vitamin D is produced in the skin after sun exposure or obtained from food, mainly fatty fish or vitamin D supplements. For activation vitamin D must be hydroxylated in the liver to 25(OH)D and thereafter in the kidney to 1,25(OH)2D. For 1,25(OH)2D to exert its effect it has to bind to the vitamin D receptor (VDR). The serum level of 25(OH)D is in part genetically determined and several polymorphisms with effects on serum 25(OH)D have been identified. These polymorphisms appear as important for the serum 25(OH)D level as the effect of season, or vitamin D supplementation. Vitamin D is not only vital for the skeleton, but appears also to be related to heart disease, diabetes, cancer and mortality. However, as the serum level of 25(OH)D is strongly influenced by lifestyle factors that are also related to health outcomes, it is difficult to decide whether the relation between vitamin D and health is causal or not. On the other hand, the polymorphisms are not influenced by life-style, and the effect of the polymorphisms will be life-long. Accordingly, they may be a better marker of vitamin D status than a single serum 25(OH)D measurement. Furthermore, there are a number of polymorphisms regarding the VDR that may be associated with health. In the Tromsø study DNA is available from almost 27,000 individuals, and end-point registers have been made for fractures, coronary infarction, diabetes, cancer and mortality. In the present study we therefore related the polymorphisms affecting the serum 25(OH)D level and the function of the VDR with these endpoints with the use of a case-cohort design. If we were to find the expected associations between the polymorphisms and diseases, this would further strengthen the role of vitamin D in human health, and may have importance for recommendations regarding vitamin D supplementation. Considering the high prevalence of vitamin D deficiency worldwide, this could potentially have huge consequences for public health.

For further information about ”Polymorphisms in the Vitamin D System and Health, 2013”, please contact the principal investigator.
DOI: 10.48758/ufz.12628
title: Eddy covariance rawdata from grassland site 'Am Grossen Bruch' (DE-GsB) in Central Germany for December 2015 (201512)

description: eddy covariance raw data (20Hz) from Am Grossen Bruch (Grosses Bruch) in 2.3m height, acquisition of CSAT3, LI7500 and LI7700 with eddymeas, converted from slt- and dia-files to ascii-format (u, v, w, T_Sonic, CO2, H2O, p_75, CH4, P_77, T_77, SA_DIAG, GA75_DIAG, GA77_DIAG_a, GA77_DIA_b), no time column, individual file names are indicating the starting time of the data acquisition period (according to RFlux-requirements)

sonic alignment: 280 deg
IRGA: LI75H-1600

Am Grossen Bruch DoY 335-365 (Dec 2015)

file: DE-GsB_201512_eddy-raw_csv.zip

more files available in the same repository
DOI: 10.6084/m9.figshare.23514258
title: Behavioural data

description: PEEG_EEG*: participant file - run*_.xpd: file for each run containing the trial and event markers, and responses to subjective questionnaires
DOI: 10.6084/m9.figshare.22698424.v1
title: Supplementary Material for: Methods and software to analyze gene-environment interactions under a case-mother - control-mother design with partially missing child genotype

description: Introduction: The case-mother - control-mother design allows to study fetal and maternal genetic factors together with environmental exposures on early-life outcomes. Mendelian constraints and conditional independence between child genotype and environmental factors enabled semiparametric likelihood methods to estimate logistic models with greater efficiency than standard logistic regression. Difficulties in child genotype collection require methods handling missing child genotype. Methods: We review a stratified retrospective likelihood and two semiparametric likelihood approaches: a prospective one and a modified retrospective one, the latter either modeling the maternal genotype as a function of covariates or leaving their joint distribution unspecified (robust version). We also review software implementing these modelling alternatives, compare their statistical properties in a simulation study, and illustrate their application, focusing on gene-environment interactions and partially missing child genotype. Results; The robust retrospective likelihood provides generally unbiased estimates, with standard errors only slightly larger than when modelling maternal genotype based on exposure. The prospective likelihood encounters maximization problems. In the application to the association of small-for-gestational-age babies with CYP2E1 and drinking water disinfection by-products, the retrospective likelihood allowed a full array of covariates, while the prospective likelihood was limited to few covariates. Conclusion: We recommend the robust version of the modified retrospective likelihood.
DOI: 10.6084/m9.figshare.23514255
title: Additional files

description: - subjs_extra_information_PEEG.csv: Output from pupil preprocessing script, incl Gender column - PEEG_eeg_sharon.csv: final EEG alpha power stim/sham (for Bayesian analysis) - blink_rate.txt: proportion of blinks per run per subject (for control analysis) - sub_noArtefact.txt: trials without EEG stimulation artefact (to be removed from pupil analysis)
DOI: 10.6084/m9.figshare.23514255.v1
title: Additional files

description: - subjs_extra_information_PEEG.csv: Output from pupil preprocessing script, incl Gender column - PEEG_eeg_sharon.csv: final EEG alpha power stim/sham (for Bayesian analysis) - blink_rate.txt: proportion of blinks per run per subject (for control analysis) - sub_noArtefact.txt: trials without EEG stimulation artefact (to be removed from pupil analysis)
DOI: 10.6084/m9.figshare.23514507
title: distance-matrix (update on Jun 14, 2023)

description: This data is a matrix version of Table-2 in the paper
DOI: 10.6084/m9.figshare.23514519
title: Descripción muestra revistas artículo "Patrones de coautoría en la investigación española y latinoamericana en la categoría “Communication” en ESCI y JCR (2015-2021)"

description: Descripción de la muestra de artículos por país de filiación de los autores y de las revistas de publicación
DOI: 10.6084/m9.figshare.23514519.v1
title: Descripción muestra revistas artículo "Patrones de coautoría en la investigación española y latinoamericana en la categoría “Communication” en ESCI y JCR (2015-2021)"

description: Descripción de la muestra de artículos por país de filiación de los autores y de las revistas de publicación