cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.44328
title: Raman and TGA data supporting Kaniyoor et al. "High throughput production of single-wall carbon nanotube fibres independent of sulfur-source"

description: Supporting data for Raman spectra and Thermogravimetric Analysis (TGA) data given in Kaniyoor et al. "High throughput production of single-wall carbon nanotube fibres independent of sulfur-source". The folder contains Raman spectroscopy and Thermogravimetry data for the various samples analysed in the work. Raman spectra were obtained using a Bruker Raman Senterra microscope with laser lines 532 (2.33 eV, 5 mW), 633 (1.96 eV, 5 mW), and 785 nm (1.58 eV, 10 mW). For every sample at least five different locations are sampled under a x20 objective, and averaged in the Bruker OPUS software. The raw data is presented in the Raman folder, named as Date synthesised_Sample name_Microscope Objective_Laser Wavelength_Laser Power_Accumulation time_Number of additions. Each data file has two columns which are Raman shift (in cm-1) and Intensity (counts). Please refer to the excel/.csv file in this folder to link the sample names to the flow rate, sulfur source (thiophene, carbon disulphide (CS2), elemental sulfur) and molar concentration (Low = 0.76 S:Fe, high = 1.52 S:Fe) under which the samples were synthesised. To obtain graphs presented in the paper, the data must be baseline corrected by asymmetric least squares method, and all intensities must be normalized to the respective G band intensity maximum. G:D values are calculated by taking the area of the G and D peaks. These analyses can easily be performed in Origin software. Thermogravimetry was performed using a TA Instruments Q500 under a dynamic ramp rate to 1000 ∞C with synthetic air. The data presented were obtained directly from the TA instruments software. The naming protocol is as follows: Sample synthesized date_Sample number_sulfur concentration and source hydrogen flow rate. Each data file has several columns of data. The important columns are 2nd- temperature (in celcius), 3rd ñ mass of the sample at different temperatures (in mg), 6th ñ derivate mass loss data. Information such as amorphous carbon content and residual catalyst can be obtained from the mass loss curves. Integrating different peaks in the derivative curves gives the amount of species that burn at that peak.
DOI: 10.6084/m9.figshare.c.3618941_d3
title: Additional file 3: Table S6. of Illness progression in chronic fatigue syndrome: a shifting immune baseline

description: Supplemental table containing the full data set used in this work including subject age, body mass index (BMI), diagnostic class (i.e. ME/CFS or control), cohort reference and illness duration as well as the normalized and coded values for each cytokine species measured in each subject. Table S7. Supplemental table containing symptom severity based on the Multidimensional Fatigue Inventory (MFI) for all ME/CFS subjects aged 18Â years and older. (XLS 86 kb)
DOI: 10.6084/m9.figshare.c.3618941_d4
title: Additional file 1: Tables S1, S2, S3. of Illness progression in chronic fatigue syndrome: a shifting immune baseline

description: Supplemental tables containing summary statistics of the data collected in each cohort segment, group-wise comparative statistics and normalization constants for each cytokine species. Table S4. contains Spearman correlation and corresponding null probability values for pair-wise correlation of the Multidimensional Fatigue Inventory (MFI) with IL-1Îą, IL-6 and IL-8 levels in subjects older than 18Â years of age. Table S5 contains the performance of classification based on IL-1Îą, IL-6 and IL-8 levels where the relative contribution of each cytokine is adjusted on the basis of duration of illness only as described in Additional file 4: Figure S2. (XLS 51 kb)
DOI: 10.17863/cam.88679
title: Research data supporting "Cleaning of thick viscoplastic soil layers by impinging water jets"

description: The data set shows videos from experiments described in the paper, where water jets (2 mm or 3 mm diameter) impinge vertically downwards on to a Perspex or glass plate coated with a layer of a soft solid soil. The jet impinges normally, so the soil is removed in a roughly cricular pattern. The plates are transparent. Removal of the soil was monitored from above using a Go Pro Hero digital camera operating in video mode: removal of the soil was monitored from below using a Canon digital SLR, again operating in video mode, focused on a mirror located beneath the target plate and angled at 45 degrees to the horizontal. These videos were used to characterise removal behaviour, and to calculate the size of the cleared area. For the latter, individual frames were digitised in Matlab and the average radius of the cleared region calculated. The average radius viewed from above was labelled 'b' and that from below was labelled 'a': the labels were chosen for consistency with previous studies which only considered removal monitored from below. The three sets show examples of different removal behaviour: in 'cratering', material is cleared away from the point of impingement with well defined top and bottom boundaries. In 'blistering', observed with thick layers, the liquid initially penetrates the soil layer and generates a cavern, with a confining shell of removed soil - this 'blister' grows with time and eventually the confining shell ruptures. In 'walling', following blister rupture, the confining shell retains its coherence and moves outwards with the removal front.
DOI: 10.17863/cam.100189
title: Dataset for "Chemoenzymatic Photoreforming: A Sustainable Approach for Solar-fuel Generation from Plastic Feedstocks"

description: Data includes: - Catalyst Characterization - contains UV, IR, PXRD, TEM and XPS data (as Origin and PNG files). - Enzyme Pretreatment - contains all data on enzyme pre-treatment (as Origin, JPG and PNG files). - Photoreforming - contains all photoreforming data including integrated system and CO2R (as Origin and JPG files). - Readme file included.
DOI: 10.17863/cam.17142
title: Research data supporting "An analysis of the energetic reward offered by field bean (Vicia faba) flowers: nectar, pollen and operative force"

description: Dataset of nectar and pollen reward values collected from Vicia faba flowers.
DOI: 10.17863/cam.20979
title: Trapped field data and analysis for 17.7 T trapped field in a stack of HTS tapes

description: Data relating to trapped field experiments conducting at the National High Magnetic Field Lab in Florida, USA on stacks of HTS tape. Included is raw data for the 17.7 T trapped field experiment and Hall probe calibration data as well as a summary file for all the data collected.
DOI: 10.17863/cam.6537
title: Research data supporting: "Enhancing photoluminescence yields in lead halide perovskites by photon recycling and light out-coupling"

description: This data supports the findings of our publication "Enhancing photoluminescence yields in lead halide perovskites by photon recycling and light out-coupling". The repository contains transient absorption and transient photoluminescence data as well as fluence dependent photoluminescence quantum yields.
DOI: 10.17863/cam.61926
title: COVID-19 Systematic Review Supporting Documentation

description: These are the supporting materials to the systemaic review of machine learning methods applied to imaging for diagnosis and prognosis of COVID-19.
DOI: 10.6084/m9.figshare.c.3619010_d5
title: MOESM4 of A rapid passage through a two-active-X-chromosome state accompanies the switch of imprinted X-inactivation patterns in mouse trophoblast stem cells

description: Additional file 4: ChIP-on-chip analysis of H3K27me3 distribution along X-linked genes in male F2 TS cells, in female F3 TS cells and in I-XCI revertant cells from clone 1#A. Mean of two replicate ChIP experiments.
DOI: 10.6084/m9.figshare.c.3619010_d9
title: MOESM7 of A rapid passage through a two-active-X-chromosome state accompanies the switch of imprinted X-inactivation patterns in mouse trophoblast stem cells

description: Additional file 7: Single-cell RT-qPCR analysis in F3 parental cells, in cells of clones 1#C and 1#A after HAT removal and in cells of clones 3#C and 2#C both before and after HAT release.
DOI: 10.6084/m9.figshare.c.3619019_d2
title: Additional file 3: of Exploiting single-molecule transcript sequencing for eukaryotic gene prediction

description: Perl scripts. (ZIP 19 kb)
DOI: 10.6084/m9.figshare.c.3619025_d1
title: Additional file 8: Table S4. of Exploiting single-cell expression to characterize co-expression replicability

description: BrainSpan sample metadata and co-expression summary statistics. For our re-analysis of the BrainSpan data we generated co-expression networks for each individual with 10 or more samples. The table lists the sample ID, sex, age, the number of samples included in the network, and then provides summary statistics from the co-expression analysis including the AUROC of the autism candidate (ASD) genes, the mean expression of the ASD genes, and the mean performance of the network compared to GO slim. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3619025_d2
title: Additional file 3: Table S2. of Exploiting single-cell expression to characterize co-expression replicability

description: Sample metadata for ChC and Pv single cell RNA-seq analysis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3619019_d3
title: Additional file 4: of Exploiting single-molecule transcript sequencing for eukaryotic gene prediction

description: Sample data for testing pipeline functionality. (ZIP 18664 kb)
DOI: 10.17863/cam.12346
title: Data set for "Decoupled Associative and Dissociative Processes in Strong yet Highly Dynamic Host-Guest Complexes"

description: Data supporting the publication "Decoupled Associative and Dissociative Processes in Strong yet Highly Dynamic Host-Guest Complexes"
DOI: 10.17863/cam.30242
title: Research data supporting "Universal Prethermal Dynamics of Bose Gases Quenched to Unitarity"

description: The Figure folders contain the data points which reproduce each of the plots in the paper. The read-me files for each individual figure provide additional information. The Data folder contains the supporting data series (time- and momentum-resolved data used to extract the half-way times and quasi-steady-state (re)distributions). Additional information is available in the '…Overivew.txt' files. Contact details: ce330@cam.ac.uk / christoph.eigen@gmail.com zh10001@cam.ac.uk
DOI: 10.6084/m9.figshare.20272293.v1
title: Supplementary Material for: Viscum album L., a therapeutic option for neoplastic diseases in companion animals? A systematic review

description: Cancer is a common disease in humans and in companion animals and treatment is challenging. The aim of this systematic review was to identify and assess the potential use of Viscum album L. extracts (VAE) for treatment of neoplastic diseases in companion animals. Peer-reviewed animal, in vivo and in vitro studies were included, considering the preferred reporting items for systematic reviews and meta-analyses (PRISMA) statement and a measurement tool to assess systematic reviews (AMSTAR). Overall, 6,148 references were identified. Following a predefined protocol, 114 full-text references were assessed. Ultimately, 61 references were included for further assessment, 25 references included in vitro experiments, 26 included in vivo and clinical experiments and 10 references included both in vitro and in vivo experiments. These 61 references comprised data of 193 in vitro and 67 in vivo and clinical experiments. Most of the 67 in vivo and clinical experiments were conducted with mice (59), followed by rats (4), dogs (3) and horses (1). So far, oral melanomas, mammary tumors and sticker sarcomas in dogs, as well as sarcoids in horses, have been investigated in controlled clinical trials.
A scoring system was established to evaluate the outcomes of each study based on defined effect levels. 
The efficacy of VAE treatment was most pronounced for melanomas, sarcomas, mammary carcinoma and equine sarcoids. The limited number and quality of published studies on VAE treatment in companion animals impedes to draw definitive conclusions regarding the efficacy of VAE in the treatment of cancer. Thus, further research is needed to elucidate the impact of VAE on the treatment of cancer in companion animals and possible underlying mechanisms.
DOI: 10.17863/cam.108723
title: Research data supporting "Modeling carbon dioxide removal via sinking of particulate organic carbon from macroalgae cultivation"

description: All the relevant data (simulated and downloaded) and codes (model and postprocessing) for the following paper are shared here. Chen S, Strong-Wright J and Taylor JR (2024) Modeling carbon dioxide removal via sinking of particulate organic carbon from macroalgae cultivation. Front. Mar. Sci. 11:1359614. doi: 10.3389/fmars.2024.1359614 The specific early version of OceanBioME, based on which a carbon-limited photosynthesis is considered, is shared here at github: https://github.com/syou83syou83/OceanBioME_paper. Send me a request (chensi.cs001@gmail.com) if you want to access to this version. A kelp density of 100 fronds/m corresponds to 100/(20m*20m)=0.25 fronds/m^3. The subpolar_BGC1111.nc and subpolar_physics.nc ranges from 2020.1.1 to 2020.12.31. The folders are named as follows: for example, kelp10_11 indicates a run with kelp density of 10 fronds/m, with the version(11 here) being irrelevant to readers. withoutkelp11 indicates a run without kelp. The models were run for 4 years and the output is saved daily. Please refer to the paper, the Github repository of OceanBioME, and the codes for further details.
DOI: 10.17863/cam.7653
title: Research data supporting "Investigating Sodium Storage Mechanisms in Tin Anodes: A Combined Pair Distribution Function Analysis, Density Functional Theory, and Solid-State NMR Approach"

description: Raw and processed PDF, XRD, electrochemistry, ssNMR data and CIF files along with corresponding metadata for all measurements published in the paper "Investigating Sodium Storage Mechanisms in Tin Anodes: A Combined Pair Distribution Function Analysis, Density Functional Theory and Solid-State NMR Approach." Specifically, we provide PDF data as .hdf5 or .tif (raw unprocessed) and .csv (integrated and extracted) files, XRD data as .tif (raw unprocessed) and .csv (integrated and extracted) files, electrochemistry data as .csv (plain text) files, and unprocessed NMR data in the IUPAC standard JCAMP-DX format, processed data available as .csv. We refer the reader to the aforementioned paper for further details.
DOI: 10.17863/cam.13417
title: Research Data Supporting: Concomitant Polymorphism and the Martensitic-Like Transformation of an Organic Crystal

description: X-ray Diffraction Data, THz-TDS spectra
DOI: 10.17863/cam.42436
title: Research data supporting "CHERIvoke: Characterising Pointer Revocation using CHERI Capabilities for Temporal Memory Safety"

description: Source code for sweeper and modified dlmalloc (called dlmalloc_cherivoke) that implements the CHERIvoke technique. See the file README.md for a detailed description and usage instructions.
DOI: 10.17863/cam.61487
title: Research Data Supporting 'Patterns of Communication during the 1241 Mongol Invasion of Europe: Insights from the Ottobeuren Letter Collection'

description: This dataset contains files supporting the figures published in the article 'Patterns of Communication during the 1241 Mongol Invasion of Europe: Insights from the Ottobeuren Collection'. The purpose of these figures is to provide network visualizations of the connections found in 1) the Ottobeuren letter collection (Innsbruck, Universitäts- und Landesbibliothek Tirol, Cod. 187, ff. 1v–8v), and 2) communication between actors involved in planning the defence of the Holy Roman Empire against the Mongols between approximately March and July 1241. The fileset includes the Gephi master file used to create the figures, CSV files containing raw data, and a README file. The data supporting these figures was compiled by the author first between September and November 2019, and then between March and November 2020, concurrently with the production of the article draft. It was revised in March 2021.
DOI: 10.6084/m9.figshare.c.3619049_d8
title: MOESM15 of Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes

description: Additional file 15: Table S10. Primers used for construction of plasmids in this study. Primer ID and primer sequence used for construction of the GFPâ  CenH3 plasmid are shown.
DOI: 10.6084/m9.figshare.c.3619049_d9
title: MOESM5 of Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes

description: Additional file 5: Table S2. Primers and length of the amplification products to verify the length of the centromeres. For each centromere, three PCR reactions were performed. PCR reactionÂ 1 amplifies the whole centromeric region, and PCR reactionsÂ 2 and 3 amplify two parts of the centromeric region. Primer IDs, primers sequences and the expected product are shown for all PCR amplifications.
DOI: 10.6084/m9.figshare.c.3619067_d4
title: Additional file 1:Supplementary Tables. of Prognostic relevance of molecular subtypes and master regulators in pancreatic ductal adenocarcinoma

description: Table S1. Differential expression analysis performed by limma R package. Table S2. HNF1Î˛ expression in different human pancreatic cancer cell lines. Table S3. Master regulatory Results of gene set up-regulated in PDAC versus Control. The results are based on the enrichment score of the motifs (column 1), scores are the Area Under the Curve (AUC) and the Normalized Enrichment Score (NES). Motifs clusters are shown in Cluster code column. Predicted associated Transcription factors and predicted targets are shown in the two last columns. The TF view display by iRegulon integrates the results per clusterCode and prioritize the putative TF associated to a given cluster of motifs. Table S4. Master regulatory Results of gene set down-regulated in PDAC versus Control. See legend in Table S3. (XLSX 205Â kb)
DOI: 10.17863/cam.13210
title: Reduced Dimensionality in Drift-Diffusion Models of Back-Contact Solar cells and Scanning Photocurrent Microscopy supporting data

description: This is some of the supporting matlab code or output data needed to generate the simulations and graphs for the publication.
DOI: 10.6084/m9.figshare.c.3619049_d11
title: MOESM10 of Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes

description: Additional file 10: Table S6. Length of telomeric repeat sequences on core and accessory chromosomes. The length of the telomere repeat tracts (TTAGGG)n was determined from the available genome sequence. As sequencing into chromosome ends leaves some uncertainty about the true length of telomeres in Z. tritici, these data are included to show that there are no significant differences between the currently available sequence from core and accessory chromosomes. Near TTAGGG repeat sequences abutting the telomere tracts are also shown. Overall, core chromosomes have slightly longer telomeres than accessory chromosomes (133Â bp vs. 118Â bp) with 2.5 additional repeats (22.3 vs. 19.8 repeats/telomere).
DOI: 10.6084/m9.figshare.c.3619025_d9
title: Additional file 1: Table S1. of Exploiting single-cell expression to characterize co-expression replicability

description: Bulk RNA-seq expression studies used for meta-analysis, sorted by GEO ID (GEO ID = Gene Expression Omnibus Identifier). The table contains quality control and source information for each bulk RNA-seq dataset retrieved from the Gemma database. PMID = PubMed Identifier.(XLSX 72 kb)
DOI: 10.6084/m9.figshare.c.3619049_d12
title: MOESM9 of Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes

description: Additional file 9: Table S5. Putative genes in centromeric regions and their expression. In total, 39 putative genes were located within or overlapping centromeric regions. Genes with a mean RPKM value &gt; 2 are considered expressed (indicated by √). Expression data were from a previous study [14] and both the original JGI [11] and our new gene IDs [12] are shown. Expression levels for control genes (GAP-DH, histone H3, beta-tubulin and CenH3) are shown for comparison. The mean expression level of centromeric genes on core chromosomes was 385.4 ± 1881.1 and on accessory chromosomes 1.72 ± 2.8.
DOI: 10.15468/dl.web8es
title: Occurrence Download

description: A dataset containing 1549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pongo pygmaeus (Linnaeus, 1760)"
 ]
}

 The dataset includes 1549 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033188-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619049_d14
title: MOESM8 of Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes

description: Additional file 8: Table S4. Repetitive regions and annotated transposable elements (TEs) in the centromeres. Position of repeats (Start and Stop) is relative to centromere positions (TableÂ 1; Cen Start and Stop). Categorized TE-families are labeled according to the nomenclature proposed by Wicker and colleagues [34]. â  NoCatâ   means that repetitive DNA does not match TE sequences.
DOI: 10.17863/cam.22125
title: Problems and Solutions in Scientific Text

description: Data set used for experiments. Please see README file for description of files.
DOI: 10.17863/cam.56363
title: Research Data Supporting "The diagnostic performance of CA125 for the detection of ovarian and non-ovarian cancer in primary care: a population-based cohort study"

description: This dataset contains the probability of cancer at different CA125 levels derived from logistic regression analysis and supporting the PLOS Medicine publication: "The diagnostic performance of CA125 for the detection of ovarian and non-ovarian cancer in primary care: a population-based cohort study". The dataset is in Excel format. Sheet A provides the probability of ovarian cancer (with associated 95% confidence intervals) for CA125 levels between 1-1000 U/ml. Sheet B provides the probability of invasive ovarian cancer (with associated 95% confidence intervals) for CA125 levels between 1-1000 U/ml. Sheet C provides the probability of all cancer (with associated 95% confidence intervals) for CA125 levels between 1-1000 U/ml. Sheet D provides the probability of ovarian cancer (with associated 95% confidence intervals) for CA125 levels between 1-1000 U/ml for women aged 30, 40, 50, 60, 70 and 80 years of age.
DOI: 10.17863/cam.13025
title: Research data supporting "Optoacoustic detection of early therapy-induced tumor cell death using a targeted imaging agent"

description: Raw data for the figures in the paper and Supplementary data file.