cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/gr5ntsbp7p
title: Datasets to Accompany: European Epidemiological Patterns of Cannabis- and Substance- Related Neurological Congenital Anomalies: Space-time and Causal Inferential Study.

description: Datasets to accompany paper of above title
DOI: 10.17632/n9txt6y5cj
title: TRABID deubiquitinase overexpression enables synthetic lethality to PARP inhibitor via prolonged retention of 53BP1 at DSB sites

description: Here, we demonstrate that TRABID deubiquitinase (DUB) binds to 53BP1 at endogenous level and regulates 53BP1 retention at DSB sites. TRABID deubiquitinates K29-linked polyubiquitination of 53BP1 mediated by E3 ubiquitin ligase SPOP and prevents 53BP1 dissociation from DSBs, consequently inducing HR defects and chromosomal instability. Prostate cancer cells with TRABID overexpression exhibit a high sensitivity to poly (ADP-ribose) polymerase (PARP) inhibitors. This dataset include all the raw data of western blot from this project.
DOI: 10.17632/njh724xgtg
title: CmdStan-RUS Bilayer Demonstration Files and Code

description: This repository contains all of necessary input files for the CmdStan-RUS Bilayer code to reproduce the dual-likelihood, optimization plus Laplace approximation fits, of virtual bilayer "VB-4" and experimental bilayer "EB-1" published in: B.R. Goodlet, B. Bales and T.M. Pollock, "A New Elastic Characterization Method for Anisotropic Bilayer Specimens via Bayesian Resonant Ultrasound Spectroscopy", Ultrasonics (2021). The .stan buildfile is highly annotated with: - block and function descriptions - input data for 2 experiments (exp_1 = bare substrate, exp_2 = bilayer specimen) - parameter definitions, bounds, and units - transformed parameters (coordinates) - prior distributions - code for both a "normal" and "log-normal" noise model Datafile-vb4.dat and Datafile-eb1.dat each give the input data for exp_1 and exp_2 - Note: the computational precision for these models, particularly the bilayer model, are set to compute "publish quality" fits that may require 32+ GB of RAM and a runtime in excess of 24 hours. - To test the code on a computer with less RAM, try a low-precision fit using: P_exp1 = 10, and PX_exp2 = 12, PY_exp2 = 12, PZ_sub_exp2 = 1, PZ_coat_exp2 = 0 (and if the fit completes, expect some biased parameter estimates due to insufficient P) - If the code crashes before a single iteration is written to the output.csv file, you may be (i) exceeding the RAM of your computer, or (ii) if you increased the computational precision of the fit, you may be exceeding the computational limits of the code Runfile-vb4.txt and Runfile-eb1.txt each give 3 sets of commands: the first two conduct a optimization (using the LBFGS algorithm) followed by a Laplace approximation, the third conducts a full HMC inference (using the NUTS algorithm) - The first set of commands does not specify initial conditions, so random initial conditions are generated, followed by 1000 optimization iterations and 1000 laplace draws - The second set of commands specifies that "init-vb4.dat" be used for initial conditions, followed by 1000 optimization iterations and 1000 laplace draws - The third set of commands sample the posterior with HMC, using 250 warm-up samples (a bare minimum for successful HMC auto-tuning) followed by 500 sampling samples (from which posterior distributions are computed) - Be advised: HMC sampling of the posterior (as opposed to Laplace approximations of the posterior) can require 10 to 100 times as many forward model evaluations, with "publish quality" fits taking 30+ days of continuous compute time. init-vb4.dat details how initial conditions are specified - Any or all of the parameters (defined in the .stan buildfile) can be specified with initial conditions - Initial conditions for transformed parameters are ignored
DOI: 10.17632/w88c6b4h9f
title: The influence of information noise on valuation of high-tech enterprises on developed markets (Draft)

description: Draft Dataset of masters work "The influence of information noise on valuation of high-tech enterprises on developed markets"
DOI: 10.17632/2jkvh687n6
title: Certificates of conversion, registers of conversion and sanad or asnads of the converts files 2008-2020 (388-659)

description: This is the raw data on the status of those non-Muslims that converted to Islam in Sindh over the past few decades. The sources, included conversion certificates, registers of the converts maintained by religious clerics, audio and video interviews, court judgements, petitions filed by neo converts against their parents, CNICs, Marriage certificates etc.  The data was gathered by Ghulam Hussain, Senior Research Officer at the Institute of Policy Studies (IPS), Islamabad.
DOI: 10.17632/3hdr87rx83
title: The role of SETD3-mediated histidine methylation of MCM7 in DNA replication

description: One excel file represents original data in supplementary Figure S1-S9. Two compressed files including original data (WB and digitial data) in Figure 1-7, and excel file showing original mass spectrometry data.
DOI: 10.17632/6j9m3sgc3x
title: Data recorded/collated for Evaluation of changes in some physico-chemical properties of bottled water exposed to sunlight in Bauchi State, Nigeria

description: This data is from the study (Evaluation of changes in some physico-chemical properties of bottled water exposed to sunlight in Bauchi State, Nigeria) which shows levels of pH, Bisphenol A (ppb or µg/L), Nitrate (mg/L), Antimony (ppb or µg/L), Temperature (degrees Centigrade) and number of days before sampling. The dataset is provided as .csv. The dataset was analysed in R and charts/figures were generated from there.
DOI: 10.17632/bbkxn2wp39
title: Database_Validation Rmssd Selftraining UMH

description: Two different devices that recorded HRV were used for the measurements: a Biopac MP35 3-lead electrocardiogram (Biopac Systems, Goleta, CA, USA) and the new smartphone application (Selftraining UMH (Elche, Spain)). The electrocardiogram was connected to a computer via USB port and the mobile application was linked using Bluetooth to a previously validated HR sensor chest strap (Polar H10, Polar Electro Oy, Kempele, Finland). Four consecutive 6-minute recordings were captured by alternating the supine position with the seated position in a resting state. During the 6-minute period, the first minute was perfomed to stabilize the HRV signal and the last 5 minutes in each position were taken for the subsequent analysis.
DOI: 10.17632/j8648wk23r
title: Tepache_sequences_raw_data

description: This data include the R1-R2 raw Illumina MiSeq sequences of 16s rDNA (V4-V5) and ITS (ITS2-ITS4) for the analysis of bacterial and fungal structure of Mexican tepache fermented  beverage. This study include de replicates (R,R2,R3) sequences of initial time (T0 h) and final fermentation time (T72 h).
DOI: 10.17632/m346tmvt4x
title: Gas fluidization by DEM-PNM simulation

description: The following video shows the dynamic flow patterns in a gas-fluidized bed, simulated by a DEM-PNM approach.
DOI: 10.17632/ryc7vr2xyd
title: Data for: The role of visual awareness in processing of global structure: Evidence from the perceptual organization of hierarchical patterns

description: Raw data for Experiment 1 Raw data for Experiment 2 SAS code
DOI: 10.17632/t3s57nx363
title: 2021 Annual Report of DataDerm CORRIGENDUM – Mendeley Hyperlink

description: This document contains the Mendeley Hyperlink for the following manuscript:  

Marta VanBeek, MD, MPH, Robert A. Swerlick, MD, Barbara Mathes, MD, Margo J. Reeder, MD, Toni Kaye BS, MPH, Arik Aninos BS, MSc, Mason Totaro, BS, Alyssa Burns, MHA, Matthew Fitzgerald, MPH, DrPH, Caryn D. Etkin, PhD, MPH, Jeffrey P. Jacobs, MD.  2021 Annual Report of DataDerm  The Database of The American Academy of Dermatology (AAD) - CORRIGENDUM
DOI: 10.17632/xhj79xjhpc
title: Simulations of seasonal variations in carbonate parameters in Chukchi Sea 2014

description: Understanding the seasonal variation of air-sea CO2 exchange and the underlying mechanisms of biogeochemical dynamics is important for predicting the impacts of climate change on and feedback by the ocean. The box model simulation aims to investigate how a flexible C:N uptake ratio by phytoplankton affects DIC fixation and air-sea CO2 fluxes in the Chukchi Sea. Two scenarios with different C:N uptake ratios were examined in the box model. For the fixed-stoichiometry scenario, a C:N uptake ratio of 6.6 (Redfield ratio) was used. For the non-Redfield scenario, much higher C:N uptake ratios were used. The simulations are conducted separately for the southern Chukchi Sea (<69.5ºN) and the northern Chukchi Sea (>69.5ºN)  from spring to summer in 2014. We found that a box model with a non-Redfield C:N uptake ratio can adequately reproduce observed pCO2 and DIC, which reveals that, during the intensive growing season (late spring to early summer), 30%-46% CO2 uptake in the Chukchi Sea was supported by a flexible stoichiometry of phytoplankton.
DOI: 10.17632/xpbj4m4kbb
title: Succinea Pathogenicity Assay

description: Snail measurements and pathogenicity assay data
DOI: 10.17632/ydbm2v5c7z
title: LINF_290008000

description: Forkhead-associated (FHA) domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/65kg26w9rt
title: Data for: Morphological constraint obscures richness: a mitochondrial exploration of cryptic richness in Transversotrema (Trematoda: Transversotrematidae)

description: cox1, ITS2 and 28S alignments for analyses conducted in "Morphological constraint obscures richness: a mitochondrial exploration of cryptic richness in Transversotrema (Trematoda: Transversotrematidae)", published in the International Journal for Parasitology, by Cutmore, Corner & Cribb
DOI: 10.17632/7nbkkskft3
title: LINF_020005500

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/b3rf6fbjys
title: Single-nucleus RNA sequencing of BIN1 WT, HET and KO hiPSC-derived neural cells

description: Count tables showing the number of counts per nucleus in 190 days-old BIN1 WT, HET and KO human cerebral organoids (org_counts_processed) and in BIN1 WT and KO human induced neural cells grown in 2D (spontaneous differentiation or ASCL1-induction).

Nuclei isolation and Hash-tagging with oligonucleotides steps were realized on ice with pre-cold buffers and centrifugations at 4°C. 6.5-month-old BIN1 WT, HET, and KO organoids were processed as previously (Lambert et al., 2022).  4-week-old cultured ASCL1-induced or 6-week-old spontaneously differentiated BIN1 WT and KO 2D neural cell cultures were washed in the imaging plate wells with 500 µL of Deionized Phosphate Buffer Saline 1X (DPBS, GIBCO™, Fisher Scientific 11590476). Cells were resuspended with wide bore tips in 500 μL Lysis Buffer (Tris-HCL 10mM, NaCl 10mM, MgCl2 3mM, Tween-20 0,1%, Nonidet P40 Substitute 0,1%, Digitonin 0,01%, BSA 1%, Invitrogen™ RNAseout™ recombinant ribonuclease inhibitor 0,04 U/μL). Multiple mechanical resuspensions in this buffer were performed for a total lysis time of 15 mins., 500 μL of washing buffer was added (Tris-HCL 10mM, NaCl 10 mM, MgCl2 3 mM, Tween-20 0.1%, BSA 1%, Invitrogen™ RNAseout™ recombinant ribonuclease inhibitor 0,04 U/μL) and the lysis suspension was centrifuged 8 mins. at 500 g (used for all following centrifugation steps). Nuclei pellets were washed tree times with one filtration step by MACS pre-separation filter 20μm (Miltenyi Biotec).Nuclei pellets were resuspended in 100 μL of staining buffer (DPBS BSA 2%, Tween-20 0.01%), 10 μL of Fc blocking reagent HumanTruStainFc™ (422302, Biolegend) and incubated 5 min at 4°C. 1μl of antibody was added (Total-Seq™-A0453 anti-Vertebrate Nuclear Hashtag 3 MAb414 for the WT and Total-Seq™-A0454 anti-Vertebrate Nuclear Hashtag 4 MAb414 for the KO, 97286 and 97287 respectively, Biolegend) and incubated 15 mins. at 4°C. Nuclei pellets were washed three times in staining buffer with one filtration step by MACS pre-separation filter 20 μm (Miltenyi Biotec) to a final resuspension in 300 μL of staining buffer for Malassez cell counting with Trypan blue counterstaining (Trypan Blue solution, 11538886, Fisherscientific). Isolated nuclei were loaded on a Chromium 10X genomics controller following the manufacturer protocol using the chromium single-cell v3 chemistry and single indexing and the adapted protocol by Biolegend for the HTO library preparation. The resulting libraries were pooled at equimolar proportions with a 9 for 1 ratio for Gene expression library and HTO library respectively. Finally, the pool was sequenced using 100pb paired-end reads on NOVAseq 6000 system following the manufacturer recommendations (Illumina).
DOI: 10.17632/bpkm628pwd
title: Data for: Quantification of Leydig cells and stromal hyperplasia in the postmenopausal ovary of women with endometrial carcinoma

description: dataset Leydig cell hyperplasia
DOI: 10.17632/hdwyxx8h6k
title: QUABIO_Pseudoophonus

description: Data on the gut microbiome of Pseudoophonus rufipes in relation to experimental conditions: conventional agriculture [CNV] and organic agriculture [ORG];
DOI: 10.17632/j38fxrtg5b
title: LINF_190015500

description: tRNA pseudouridine synthase A-like protein | mt-SAF11
Leishmania infantum (strain JPCM5)
DOI: 10.17632/nppb43snjw
title: LINF_070009800

description: 3-hydroxyacyl-ACP dehydratase | HTD2-1; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wc95xgk3g2
title: Central Centrifugal Cicatricial Alopecia in Males: A Case Series - Supplemental Materials

description: Two supplemental figures and figure legends for the manuscript entitled "Central Centrifugal Cicatricial Alopecia in Males: A Case Series".
DOI: 10.17632/22gp23z87g
title: Systematic review reporting quality within dermatology: Bibliometric trends compared with general medicine and general surgery from 2008 to 2017. Supplementary Data.

description: Supplementary Data
DOI: 10.17632/5gb8rk4cjx
title: The dataset of hydrochemical investigation in Qinzhou Bay

description: This dataset mainly includes the site number, location, type, temperature pH, taste, color, smell, transparency, TDS, and ion content of water samples in Qinzhou Bay. Ion content of all samples and the TDS, pH of 10 samples for complete analysis in this dataset were tested in the Guangdong Province Research Center for Geoanalysis and Guangzhou Mine Resources Supervision and Testing Center of The P.R. China Land & Resources Ministry. Other information was the raw data measured on-site.
DOI: 10.17632/6v4df73bx7
title: generalised_epilepsy

description: Continious magnetoencephalography data for 5 min
DOI: 10.17632/7cgbws8p4w
title: Data for: ORGANIC SALTS AS KINETIC AND THERMODYNAMIC INHIBITORS FOR GAS HYDRATE PRECIPITATION

description: The images refer to the 13C and 1H NMR spectra for the synthesized organic compounds that were tested as CO2 hydrate inhibitors. The pilot plant used with inhibition experiments provides a spreadsheet with temperature and pressure data over time. These data were used to constrict the graphics present in the paper. If necessary, we can arrange all spreadsheets.
DOI: 10.17632/9ypcvgr867
title: Land Cover Classification Using LPIS Data and Open Source EO-Learn Library

description: There are pictures, tables and references used in the article
DOI: 10.17632/fhtkyp5fs2
title: Consumption in Context - Study 1

description: The study consists of a 2 x 2 ANOVA between-subjects design where both context dependence (context dependent vs. context independent) and social cue (present vs. absent) were manipulated. Because participants were responding online, serving intentions were used as the dependent variable in lieu of actual serving behavior. Intentions were used as a proxy for actual behavior as they are highly correlated when measured specifically (see Trafimow, 2000 for a review). First level of context dependence was temporarily manipulated using the method developed by Kühnen et al. (2001). Using this method, participants were asked to list the ways they are similar (different) to their family and friends to increase (decrease) their context dependence then asked to describe themselves in 10 phrases as a manipulation check. Afterwards, participants were given a scenario where they are hungry and arrive at a party with a snack table. They were then shown a picture of a table featuring a bowl and a sign saying “Please take some pretzels.” In the absent social cue condition the table also featured an exemplar plate with a large (150g) serving of pretzels on the plate. The photos were identical except with the exemplar plate edited out of the “absent” condition. Participants were then asked how many pretzels they would take in this scenario on a sliding scale (1 – 100). Questions pertaining to dietary restraint, BMI and time spent exercising were then asked to ensure no significant covariates exist. Additionally, a manipulation check was done to ensure the social nature of the cue.
DOI: 10.17632/n5t4jh5cm9
title: Retinal vibrations in bacteriorhodopsin are mechanically harmonic but electrically anharmonic: evidence from overtone and combination bands

description: These files collects the experimental data presented in the Figures from the manuscript:
Lorenz-Fonfria VA, Yagi K, Ito S and Kandori H (2021) Retinal Vibrations in Bacteriorhodopsin are Mechanically Harmonic but Electrically Anharmonic: Evidence From Overtone and Combination Bands. Front. Mol. Biosci. 8:749261. doi: 10.3389/fmolb.2021.749261 
The ".ogg" file can be open with the software Origin or OriginPro (https://www.originlab.com). A free-of-charge viewer is available at https://www.originlab.com/viewer/
DOI: 10.17632/r8xbm9xdc3
title: Programs to calculate multiple qed radiation in leptonic decays of the Z0 and W± weak bosons

description: Title of program: WRAD Catalogue Id: AADR_v1_0 Nature of problem Charged leptons from decays of the Z0^ and W^+- weak bosons are affected by substantial QED radiation effects. Relevant quantities, like energy losses undergone by the charged leptons, heavily depend on radiation of soft and collinear photons, which is inadequately treated by the O(alpha) approximation in the problem at hand. An inclusion of multiple photon emissions becomes necessary. Versions of this program held in the CPC repository in Mendeley Data aadr_v1_0; WRAD; 10.1016/0010-4655(86)90167-0 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/sbpd33dj66
title: Data for: Electrical stunning in pacu (Piaractus mesopotamicus) using direct current waveform

description: Original data from the use of electrical stunning in pacu (Piaractus mesopotamicus) using direct current waveform.
DOI: 10.17632/stgy64rb9z
title: Dataset on macroinvertebrates occurrence across different stretches of an urban Palmiet River in Durban, South Africa

description: Three hypotheses were tested: 1. Macroinvertebrate communities would exhibit spatial variation along the longitudinal gradient of the Palmiet River, with a site within an industrial area showing lower taxa richness and abundance. 2. Macroinvertebrates assemblage would be strongly associated with the physical habitat and water quality. 3. The presence of anthropogenic solid waste materials would increase the abundance of some macroinvertebrates. Sampling was conducted seasonally from March 2017 (Autumn) to January-February 2018 (Summer). Water was collected using acid-treated water sampling bottles and kept in a cooler box with ice.  Habitat assessment was carried out following McMillan (1998) protocol where habitats were given scores based on their conditions (Appendix 1). Macroinvertebrates were sampled following Dickens and Graham (2002) protocol where vegetation, stones, and gravel sand and mud biotopes were sampled. Samplings were carried out at six sites along the longitudinal gradient of an Urban Palmiet River, at the headwaters (Site 6), industrial area (Site 5), few kilometeres downstream industrial area (Site 4), before Palmiet Nature Reserve (Site 3), in the Palmiet Nature Reserve (Site 2), and few kilometers downstream Palmiet Nature Reserve, within the University of KwaZulu-Natal (Site 1). These data show variation on macroinvertebrates assemblage across 6 sites and the site 5 which was hypertrophic has shown low taxa richness and abundance. Sensitive taxa were recorded at Site 6. Generally, these data show a clear association between macroinvertebrates assemblage, water quality and physical habitat condition. Moreover, anthropogenic litter showed to provide habitat for some taxa.
DOI: 10.17632/3dmfr6kpwt
title: Nitrocarburized surface of 38CrMoAl with Enhanced Tribological Performance Enabled by Spinodal Decomposition in Strengthened Layer

description: raw data
DOI: 10.17632/3wsmvgt7gr
title: Dataset on oxidative stress and lipid peroxidation in male rat induced by Chlorpyrifos and the protective effect of Rosmarinus Officinalis

description: Generally, pesticides are employed in various agricultural and animal farming. Exposure to the Chlorpyrifos pesticide causes several human disorders such as hepatic and nephrotoxicity. Rosemary extract (RME) is a natural antioxidant compound found in plants. The purpose of this study is to investigate the possible protective effect of RME on Chlorpyrifos-induced hepatic and nephrotoxicity. To achieve this purpose, the first step was focused on considering 30 male Wistar rats and dividing them into several categorises, including non-exposed rats, the CPF group that received CPF (13.5 mg/kg, i.p.), the rosemary group that received rosemary (100 mg/kg, gavage), rosemary at a concentration of 100 mg/kg body weight plus Chlorpyrifos (13.5 mg/kg body weight), and rosemary at a concentration of 200 mg/kg body weight plus Chlorpyrifos (13.5 mg/kg body weight). In this data article, the observation time interval was 30 days. Thus, the effect of rosemary extract was determined on two different doses (100 and 200 mg/kg). Rats were euthanized by light ether anesthesia after 24 hours of the last exposure, and the biochemical analyses were performed in the liver, kidney, and blood serum.
DOI: 10.17632/4gycgck3gm
title: Sustainable sugarcane vinasse biorefinement toward biobased chemicals and bioenergy generation

description: This data corresponds to the manuscript titled: Sustainable sugarcane vinasse biorefinement toward biobased chemicals and bioenergy generation
DOI: 10.17632/553jrj86mf
title: Cuadro Sinoptico

description: Cuadro sinóptico en base al proceso de recolección de datos.
DOI: 10.17632/b3tgmcsmgy
title: Left atrial appendage strain and strain rate using cardiovascular magnetic resonance feature tracking: preliminary study on feasibility and reproducibility

description: Scientific research for publishing the article