cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pgr8pa
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010613-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.waw6jw
title: Occurrence Download

description: A dataset containing 28467844 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Mammalia",
 "TaxonKey is Aves",
 "TaxonKey is Reptilia",
 "TaxonKey is Amphibia",
 "TaxonKey is Actinopterygii",
 "TaxonKey is Elasmobranchii"
 ]
 }
 ]
}

 The dataset includes 28467844 records from 3184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203644-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyuwk8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophiostoma novo-ulmi",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007726-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4tsgu
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobularia maritima",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007727-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxz2tf
title: Occurrence Download

description: A dataset containing 4820 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wahlenbergia albomarginata"
 ]
}

 The dataset includes 4820 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007725-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsvw3h
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Catalpa bignonioides",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 221 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007728-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.54jq5e
title: Occurrence Download

description: A dataset containing 62117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Buprestidae, Coccinellidae, Dermestidae, Oedemeridae, Chrysomelidae, Cerambycidae, Mordellidae, Staphylinidae, Curculionidae, Nitidulidae, Scarabaeidae)",
 "Year 1970-2025"
 ]
}

 The dataset includes 62117 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007705-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5wa2k
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Catalpa bignonioides",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007729-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/nweue6
title: 2012 Presidential Ads: Julian P. Kanter Collection

description: This folder contains all campaign ads from the 2012 Presidential Election. Please refer to the associated paper for more details.
description: <b>Using Collection Materials</b>
<br>
The videos available for download are for use by academics pursuing scholarly research at an academic institution. For the archive's purposes, an academic institution is an educational institution that grants degrees and issues diplomas or other certifications. By downloading the videos users agree the materials will not be duplicated, posted online where they can be accessed by the general public, further loaned, or used/distributed in other unauthorized ways. Anyone wishing to use the videos for commercial use should contact the Carl Albert Center at cacarchives@ou.edu. While the University of Oklahoma owns the materials in its collection, it does not own the copyright to any of the materials. It is the responsibility of the user to acquire any necessary copyright authorizations from the copyright holder for use of the material.
DOI: 10.15468/dl.nq246d
title: Occurrence Download

description: A dataset containing 58788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Pseudacris crucifer)"
 ]
}

 The dataset includes 58788 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007715-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16101752
title: Reporting LLM Prompting in Automated Software Engineering: A Guideline Based on Current Practices and Expectations

description: This replication package provides the following files:




File
Description


extraction_evaluation.ipynb
Our evaluation of the data extraction, including code to generate the diagrams shown in the paper.


survey_evaluation.ipynb
Our evaluation of the survey, including code to generate the diagrams shown in the paper.


statistics_evaluation.ipynv
Our statistical evaluation of the survey.


filtering_recall.xlsx
Our evaluation comparing the LLM-based paper filtering to the manual ground truth.


extraction_data_e1_counts.csv
The LLMs used in the papers (extraction question E1), sorted by number of occurrences descending.


extraction_data.csv
The complete dataset from the data extraction.


extraction_round2_data.csv
The complete dataset from the 2nd round of the data extraction (validation round).


llm_strings.csv
A list of DOIs and the corresponding extracted LLMs from the data extraction (used for processing in the evaluation).


llms_extracted_merged.csv
A manual extraction of information from llm_strings.csv, separated into model, version, variant, size. Duplicates were merged, and a count was added. Sorted descending by count.


llms_extracted.csv
A manual extraction of information from llm_strings.csv, separated into model, version, variant, size.


survey_data.csv
The complete dataset from the survey.


survey_questions.csv
The survey questions linked to their IDs and question type.


include_exclude_papers_v3.txt
The final version of our prompt used for paper filtering.


pe_techniques.txt
A list of all extracted PE techniques including the number of occurrences, sorted descending.


survey_questionnaire.pdf
A printout of the online survey we conducted.
DOI: 10.5281/zenodo.16101751
title: Reporting LLM Prompting in Automated Software Engineering: A Guideline Based on Current Practices and Expectations

description: This replication package provides the following files:




File
Description


extraction_evaluation.ipynb
Our evaluation of the data extraction, including code to generate the diagrams shown in the paper.


survey_evaluation.ipynb
Our evaluation of the survey, including code to generate the diagrams shown in the paper.


statistics_evaluation.ipynv
Our statistical evaluation of the survey.


filtering_recall.xlsx
Our evaluation comparing the LLM-based paper filtering to the manual ground truth.


extraction_data_e1_counts.csv
The LLMs used in the papers (extraction question E1), sorted by number of occurrences descending.


extraction_data.csv
The complete dataset from the data extraction.


extraction_round2_data.csv
The complete dataset from the 2nd round of the data extraction (validation round).


llm_strings.csv
A list of DOIs and the corresponding extracted LLMs from the data extraction (used for processing in the evaluation).


llms_extracted_merged.csv
A manual extraction of information from llm_strings.csv, separated into model, version, variant, size. Duplicates were merged, and a count was added. Sorted descending by count.


llms_extracted.csv
A manual extraction of information from llm_strings.csv, separated into model, version, variant, size.


survey_data.csv
The complete dataset from the survey.


survey_questions.csv
The survey questions linked to their IDs and question type.


include_exclude_papers_v3.txt
The final version of our prompt used for paper filtering.


pe_techniques.txt
A list of all extracted PE techniques including the number of occurrences, sorted descending.


survey_questionnaire.pdf
A printout of the online survey we conducted.
DOI: 10.15468/dl.hg85xb
title: Occurrence Download

description: A dataset containing 34711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Triticum turgidum durum"
 ]
}

 The dataset includes 34711 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007730-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb6wfs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Barbarea rupestris, Barbarea sibirica, Barbarea sicula, Barbarea stolonifera, Barbarea stricta, Barbarea sylvestris, Barbarea taurica, Barbarea vicina, Barbarea vulgaris hirsuta, Barbarea vulgaris plena)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007732-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jntevp
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus valtos)"
 ]
}

 The dataset includes 55 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007731-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayy4mc
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "Geometry POLYGON((-73.1637 -36.72196,-73.15194 -36.72195,-73.15194 -36.70967,-73.16375 -36.70957,-73.1637 -36.72196))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Petrolisthes violaceus, Echinolittorina peruviana, Concholepas concholepas, Perumytilus purpuratus, Chiton granosus, Phidiana lottini, Aeolidia campbellii, Doris fontainii, Diaulula variolata, Gargamella, Thecacera darwini, Anthothoe chilensis, Diadumene lineata, Phymactis papillosa, Phymanthea pluvia, Parantheopsis ocellata, Anthopleura hermaphroditica, Antholoba, Meyenaster gelatinosus, Patiria chilensis, Athyonidium chilensis, Heliaster helianthus, Loxechinus albus, Arbacia nigra, Gaudichaudia gaudichaudii, Paraxanthus barbiger, Austromegabalanus psittacus, Jehlius cirratus, Orchestoidea tuberculata, Emerita analoga, Betaeus truncatus, Rhynchocinetes typus, Ligia novizealandiae, Amphoroidea typa, Petrolisthes tuberculatus, Acanthocyclus hassleri, Romaleon setosum, Pagurus edwardsii, Pisoides edwardsii, Ovalipes trimaculatus, Homalaspis plana, Allopetrolisthes spinifrons, Allopetrolisthes angulosus, Leptograpsus variegatus, Petrolisthes laevigatus, Petrolisthes tuberculosus, Petrolisthes granulosus)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007733-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15921458
title: High-Dimensional Analysis of Type 2 Lymphocyte Dynamics During Mepolizumab or Dupilumab Treatment in Severe Asthma

description: This dataset contains flow cytometry data linked to the publication: 

High-Dimensional Analysis of Type 2 Lymphocyte Dynamics During Mepolizumab or Dupilumab Treatment in Severe Asthma.

Allergy. 2025 Jun 26. doi: 10.1111/all.16633

 

Although the type 2 biologics mepolizumab and dupilumab show clinical efficacy in severe asthma, their influence on circulating lymphocytes is largely unknown. Here, we studied their impact on type 2 lymphocytes in severe asthma. We performed high-parameter flow cytometry analysis of peripheral blood mononuclear cells from 40 patients with severe asthma before (baseline), and after 4 and 12 months of mepolizumab (n =33) or dupilumab (n =7) treatment, focusing on type 2 lymphocytes.

 

Dataset Contents



Raw flow cytometry data files. Additional manual compensation adjustments were performed post-acquisition.

Manually adjusted compensation matrices (Comp_1, Comp_2, Comp_3, Comp_4) and mapping info, specifying which compensation matrix was used for which sample set.


Data Acquisition Notes



All longitudinal samples (baseline, 4 months, 1 year) from each patient were analyzed on the same day to minimize batch effects.

Flow cytometric data acquisition of all samples was performed using the same compensation setup. Additional manual compensation adjustments were applied post-acquisition to improve downstream analysis quality.


Additional Information



Full patient characteristics, study inclusion/exclusion criteria, sample processing and storage details, staining protocols and flow cytometry data acquisition details, can be found in the method section of the associated publication.

The full flow cytometry panel used for staining is available in the supporting information of the paper (table S1).
DOI: 10.5281/zenodo.15921459
title: High-Dimensional Analysis of Type 2 Lymphocyte Dynamics During Mepolizumab or Dupilumab Treatment in Severe Asthma

description: This dataset contains flow cytometry data linked to the publication: 

High-Dimensional Analysis of Type 2 Lymphocyte Dynamics During Mepolizumab or Dupilumab Treatment in Severe Asthma.

Allergy. 2025 Jun 26. doi: 10.1111/all.16633

 

Although the type 2 biologics mepolizumab and dupilumab show clinical efficacy in severe asthma, their influence on circulating lymphocytes is largely unknown. Here, we studied their impact on type 2 lymphocytes in severe asthma. We performed high-parameter flow cytometry analysis of peripheral blood mononuclear cells from 40 patients with severe asthma before (baseline), and after 4 and 12 months of mepolizumab (n =33) or dupilumab (n =7) treatment, focusing on type 2 lymphocytes.

 

Dataset Contents



Raw flow cytometry data files. Additional manual compensation adjustments were performed post-acquisition.

Manually adjusted compensation matrices (Comp_1, Comp_2, Comp_3, Comp_4) and mapping info, specifying which compensation matrix was used for which sample set.


Data Acquisition Notes



All longitudinal samples (baseline, 4 months, 1 year) from each patient were analyzed on the same day to minimize batch effects.

Flow cytometric data acquisition of all samples was performed using the same compensation setup. Additional manual compensation adjustments were applied post-acquisition to improve downstream analysis quality.


Additional Information



Full patient characteristics, study inclusion/exclusion criteria, sample processing and storage details, staining protocols and flow cytometry data acquisition details, can be found in the method section of the associated publication.

The full flow cytometry panel used for staining is available in the supporting information of the paper (table S1).
DOI: 10.15468/dl.b8ehag
title: Occurrence Download

description: A dataset containing 12803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus rosifolius"
 ]
}

 The dataset includes 12803 records from 346 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007734-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16097585
title: Daily hindcasted water temperature and model outputs for 11 sites in the Nechako Watershed

description: This dataset provides long-term daily hindcast simulations of water temperature for 11 hydrometric stations across the Nechako Watershed in British Columbia, Canada, covering the period from 1950 to 2024. It supports a related article by the same authors on water temperature modeling and dynamics in regulated and natural rivers of the Nechako Watershed.

The dataset was generated using the Air2Stream model, which was calibrated with observed streamflow and water temperature data from the Water Survey of Canada (WSC), Rio Tinto, and UNBC, as well as meteorological inputs from the ERA5-Land reanalysis product. The model exhibits high performance, with Root Mean Square Error (RMSE) values consistently below 1.5 °C for all stations.
DOI: 10.5281/zenodo.16097586
title: Daily hindcasted water temperature and model outputs for 11 sites in the Nechako Watershed

description: This dataset provides long-term daily hindcast simulations of water temperature for 11 hydrometric stations across the Nechako Watershed in British Columbia, Canada, covering the period from 1950 to 2024. It supports a related article by the same authors on water temperature modeling and dynamics in regulated and natural rivers of the Nechako Watershed.

The dataset was generated using the Air2Stream model, which was calibrated with observed streamflow and water temperature data from the Water Survey of Canada (WSC), Rio Tinto, and UNBC, as well as meteorological inputs from the ERA5-Land reanalysis product. The model exhibits high performance, with Root Mean Square Error (RMSE) values consistently below 1.5 °C for all stations.
DOI: 10.15468/dl.fqg6tj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobularia maritima",
 "Country is Georgia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007735-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bzq8f
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solms-laubachia pumila"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007736-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/mcktua
title: Presidential Campaign Ads Metadata: 1952-2012

description: This file contains all of the metadata for the 9,707 presidential ads posted within this dataverse. Please refer to the "Notes" section for the codebook.
description: <b>Variables:</b>

 ID -- The ID number assigned to the ad by the Carl Albert Center
 FILENAME -- The MP4 file associated with the ad
 ELECTION -- The 4-year election cycle in which the ad appeared
 PARTY -- The party of the candidate who ran the ad
 FIRST_NAME -- The first name of the candidate who ran the ad
 LAST_NAME -- The last name of the candidate who ran the ad
 TITLE -- The title of the ad
 AGENCIES -- The production agency that created the ad.
 POLITICAL_ACTION_COMMITTEE -- The PAC associated with the ad.
 FORMAT -- The format of the ad when it was obtained by the Carl Albert Center
 DURATION -- The duration of the ad in seconds.
 NOTES -- Miscellaneous notes associated with each ad.
 AI_SUMMARY -- AI generated summary of each ad.
DOI: 10.15468/dl.udhgrg
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphragmus eschscholtzianus"
 ]
}

 The dataset includes 144 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007737-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pr66f9
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium barnebyanum"
 ]
}

 The dataset includes 90 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007739-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6m32ku
title: Occurrence Download

description: A dataset containing 5760557 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sylvia atricapilla"
 ]
}

 The dataset includes 5760557 records from 6286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007575-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhtp8b
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Takydromus intermedius"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022849-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/5m36os
title: Replication Data for: The Broader Role of Venture Capital Due Diligence

description: This folder includes all code files and pseudo datasets necessary to reproduce the main tables reported in the paper “The Broader Role of Venture Capital Due Diligence.”
DOI: 10.5281/zenodo.16923353
title: Reproducibility package for "Learning the Language of Phylogeny with MSA Transformer"

description: Materials (code and data) supporting the analyses reported in "Learning the Language of Phylogeny with MSA Transformer."