cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.60hp6/6
title: Non-Modular Experiment Data

description: The modular but, hierarchical networks from the Non-Modular experiment are included, in this data package. For each network, there are the 0th and 2500th generation XML files containing the  are serialized version of the network.  Network's performance, modularity, hierarchy, and connection cost are given in the individual.log file, and the percentage of sub-problems the network solves is in solvent.txt file.
DOI: 10.5061/dryad.64pg3/1
title: Supplementary material 1

description: Data used for the Implementation of the molecular nomenclature system for the Globigerinella plexus. The description of the fields is provided in the file.
DOI: 10.5061/dryad.64pg3/2
title: Supplementary material 2

description: Data used for the Implementation of the molecular nomenclature system for Pulleniatina obliquiloculata. The description of the fields is provided in the file.
DOI: 10.5061/dryad.6q5vf/1
title: Data for Quantifying the Link Between Art and Property Prices in Urban Neighbourhoods

description: The variable "Rank.Mean.Change" is calculated using data from residential property sales registered at the Land Registry from 2004 to 2013 (https://www.gov.uk/government/collections/price-paid-data). We calculate the mean residential property price per London postcode district. We rank the postcodes according to mean residential property price, where a rank of 1 indicates the highest mean residential property price. We calculate the variable "Rank.Mean.Change", the relative changes in property price, by determining the difference between the 2013 rank and the 2004 rank for each London postcode district.  "Proportion.Art.Photos" is calculated using data from the popular image sharing website Flickr. For photographs in each London postcode district, we deem a photo as "art" related if there is a mention of "art" in its associated textual metadata. We search all the textual elements of each image, including the title, description and tags, using the following regular expression " \ ". We divide the number of "art" images by the total number of images for each postcode for the whole time period (2004 to 2013), in order to create a normalised indicator of "art" per area: "Proportion.Art.Photos".
DOI: 10.5061/dryad.70m1r/1
title: DRYAD_survival_data

description: This is the data file associated with the survival experiment. Please check the second sheet in the file for further details regarding the individual columns.
DOI: 10.5061/dryad.70m1r/2
title: DRYAD_food_choice

description: This data file contains our data regarding the food choice experiment. Please consult the second sheet within the file for further explanations regarding the individual columns.
DOI: 10.5061/dryad.8ch1b/1
title: Data source

description: This TAR ball contains all matlab figures with the data source embedded.
DOI: 10.5061/dryad.8f0d4/1
title: Nuphar_ABC_Arrigo2016

description: This folder contains:- SSR/ = empirical SSR dataset- data/ = ini files, hard coded- Qoutputs/ = quantinemo outputs- Qparams/ = quantinemo parameter files- Qstats/ = final summary stats- scripts/ = all needed scripts, look at README.jpg to get an idea how how the pipeline works- quantinemo = QuantiNemo V 1.6.0 (unreleased), can be downloaded at http://www.unil.ch/popgen/softwares/quantinemo/blaser_et_al_evolution.zipotherwise, contact Samuel Neuenschwander for getting a copy.Note that the pipeline must be started from scripts/ using the following command:perl ABC_loader.pl ncores nmax-ncore = number of parallel instances of quantiNemo you want to run-nmax = launch jobs until reaching nmax CPU loadDependencies:## Linux OS, Ubuntu 10.04## Perl v5.10.1threads;threads::shared;File::Basename;List::Util qw(shuffle);## R &gt;= 3.0.0e1071## QuantiNemo: V 1.6.0
DOI: 10.5061/dryad.c289v/1
title: Molecular marker data

description: Molecular marker data (genotyping results) for 266 Single Nucleotide Polimorphisms and 12 nuclear microsatellites for 517 maritime pine trees from 35 populations sampled across the species natural range.
DOI: 10.5061/dryad.c289v/2
title: Phenotypic Data

description: Survival and total height (cm) field measurements in four maritime pine common garden trials. The four trials (Asturias, Portugal, Madrid and Cáceres) have the same number of clones, with eight replicates per genotype, in a randomized complete block design. The four trial sites provided contrasting environmental conditions.
DOI: 10.5061/dryad.c289v/3
title: Climatic data

description: Climatic data (temperatures and rainfall) for each of the 35 maritime pine provenances included in the study. Populations were sorted by neutral gene pool.
DOI: 10.5061/dryad.d1b7h/1
title: Post-Infectious Survival Data

description: Data for post infectious blood meal survival for Anopheles stephensi females.
DOI: 10.5061/dryad.f1860/1
title: Data & Scripts for Chu et al. (2016) Nature Communications

description: This data file includes data and R scripts used to fit the vital rates models and to run simulations (IBM and IPM)  for Chu et al. (2016) Nature Communications.
DOI: 10.5061/dryad.fb300/5
title: Control atrial 2

description: Original images of sections of atrial tissue from control animals used for analysis shown in Figures 4 - 6. Folder 2 of 5.
DOI: 10.5061/dryad.fb300/6
title: Sham atrial

description: Original images of atrial sections from Sham animals used for analysis presented in Figures 4 - 6. Folder 3 of 5.
DOI: 10.5061/dryad.fb300/7
title: Control ventricular

description: Original images of ventricular sections from control animals used for analysis presented in Figures 4 - 6. Folder 4 of 5.
DOI: 10.5061/dryad.fb300/8
title: Sham ventricular

description: Original images of sections from ventricular cells from Sham animals used for analysis presented in Figures 4 - 6. Folder 5 of 5.
DOI: 10.5061/dryad.j860v/1
title: data_aDryad

description: FOREST: data of hummingbird – flower interactions in forest site
Shrubs: data of hummingbird – flower interactions in shrubs site
Cattle ranch: data of hummingbird – flower interactions in cattle ranch site

Info_aboutsite: Georeferenced information about the site.
 Necat info: Information about nectar production rates of the different plant species
Flower_phenology:: contains the data on the nectar production rates of the different plant species
DOI: 10.5061/dryad.k61qv/1
title: Individual_performance_DRYAD

description: Results from an experimental lab study assessing the impact of temperature on fitness in spiders with different personalities. Data include day of death (in cases where individuals died before the end of a 40 day period) and number of egg cases produced by survivors.
DOI: 10.5061/dryad.k61qv/2
title: Colony_performance_DRYAD

description: Performance (survival and reproduction) in spider colonies of different personality compositions exposed to different temperature treatments. Data includes the number of egg cases produced by each colony.
DOI: 10.5061/dryad.k94h8/1
title: data_packet

description: This is a compressed zip folder that contains the input files and alignments for molecular phylogenetic analyses performed for the study. These include:1) alignment of nrITS (NEXUS); 2) alignment of nrITS used for distance metrics (NEXUS); 3, alignments of mtSSU used in maximum likelihood (ML; PHYLIP) and Bayesian inference (BI; NEXUS); and 4) alignments of mtSSU+nrITS (standard in NEXUSA format with excluded regions) used in partitioned ML (PHYLIP, together with partition input file for RAxML) and partitioned BI (NEXUS).
DOI: 10.5061/dryad.q91bt/1
title: Cuticular hydrocarbon phenotypes of indivudual Phaedon beetles

description: Relative composition of cuticular hydrocarbons (% total peak area) of individual 21-d-old beetles of Phaedon cochleariae and P. armoraciae. Beetles were either reared on their native host plant species or on Brassica rapa ssp. pekinensis.
DOI: 10.5061/dryad.r1d8q/10
title: BEAST full-cytb analysis input file

description: Input data file in XML format used in Bayesian divergence time analysis of the full-cytb dataset in BEAST v2.
DOI: 10.5061/dryad.r1d8q/11
title: BEAST cytb haplotype analysis input file

description: Input data file in XML format used in Bayesian divergence time analysis of the cytb haplotype dataset in BEAST v2.
DOI: 10.5061/dryad.r1d8q/12
title: BEAST A. nigrofasciata lineage BSP analysis input file

description: Input data file in XML format used in Bayesian skyline plot (BSP) historical demographical analysis of the cytb dataset corresponding to the A. nigrofasciata lineage (supported by BFD species delimitation analyses; see Results) in BEAST v1.8.3. Results from one run of this datafile, as summarized in Tracer, are presented in Fig. 4A.
DOI: 10.5061/dryad.r1d8q/4
title: GARLI full-cytb ML analysis input file

description: Input data file in NEXUS format used in maximum-likelihood (ML) analysis of the full-cytb dataset in GARLI v2.0.
DOI: 10.5061/dryad.r1d8q/5
title: GARLI cytb haplotype ML analysis input file

description: Input data file in NEXUS format used in maximum-likelihood (ML) analysis of the cytb haplotype dataset in GARLI v2.0.
DOI: 10.5061/dryad.r1d8q/6
title: *BEAST 'one-species' model input file

description: Input data file in XML format used in *BEAST (multispecies coalescent) species tree analysis of the reduced-cytb dataset in BEAST v1.8.3 under a 'one-species' model lumping all Amatitlania samples into a single 'A. nigrofasciata' lineage. The final section of this file calls a post-run analysis estimating the log-marginal likelihood of the model using path sampling (PS) and stepping-stone (SS) sampling approaches.
DOI: 10.5061/dryad.r1d8q/7
title: *BEAST 'two-species disjunct' model input file

description: Input data file in XML format used in *BEAST (multispecies coalescent) species tree analysis of the reduced-cytb dataset in BEAST v1.8.3 under a 'two-species disjunct' model lumping all Amatitlania samples into A. nigrofasciata or A. siquia. The final section of this file calls a post-run analysis estimating the log-marginal likelihood of the model using path sampling (PS) and stepping-stone (SS) sampling approaches.
DOI: 10.5061/dryad.r1d8q/8
title: *BEAST 'two-species allopatric' model input file

description: Input data file in XML format used in *BEAST (multispecies coalescent) species tree analysis of the reduced-cytb dataset in BEAST v1.8.3 under a 'two-species allopatric' model lumping all Amatitlania samples into A. kanna and A. nigrofasciata. The final section of this file calls a post-run analysis estimating the log-marginal likelihood of the model using path sampling (PS) and stepping-stone (SS) sampling approaches.
DOI: 10.5061/dryad.r1d8q/9
title: *BEAST 'three-species' model input file

description: Input data file in XML format used in *BEAST (multispecies coalescent) species tree analysis of the reduced-cytb dataset in BEAST v1.8.3 under a 'three-species' null model grouping sequences into the corresponding three currently recognized species of Amatitlania. The final section of this file calls a post-run analysis estimating the log-marginal likelihood of the model using path sampling (PS) and stepping-stone (SS) sampling approaches.
DOI: 10.5061/dryad.1597g.1
title: Data from: Downscaled and debiased climate simulations for North America from 21,000 years ago to 2100AD
DOI: 10.5061/dryad.1597g.2/27.2
title: EC-BILT NA Climates 21ka-0ka, TIFS

description: Downscaled and debiased paleoclimatic simulations from CCSM3 (Liu et al. 2009). Downscaled to 0.5deg lat/lon and 500-year resolution for North America for 21,000 years ago to the 20th century. These TIFS were generated from the decadal-scale NetCDF data, and extracted as climatic summaries comprising 200-year bins and spaced 500 years apart.  They are formatted for direct input into species distribution models.
DOI: 10.5061/dryad.1597g.2/28.2
title: CMIP5 NA Climates 1950-2005AD, Historical Scenario, TIFS

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 historical scenario. Downscaled to 0.5deg lat/lon and represents a mean climatology for 1950-2005.  These TIFS were generated from the NetCDF data, and are formatted for direct input into species distribution models.  Multiple climatic variables and models are included in this file.
DOI: 10.5061/dryad.1597g.2/29.2
title: CMIP5 NA Climates 2010-2100AD, RCP 4.5 Scenario, TIFS

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 RCP4.5 scenario. Downscaled to 0.5deg lat/lon and extracted at decadal intervals from 2010 to 2100.  Downscaling follows same procedures as for paleoclimatic simulations.  These TIFS were generated from the NetCDF data, and are formatted for direct input into species distribution models.  Multiple climatic variables and models are included in this file.
DOI: 10.5061/dryad.1597g.2/30.2
title: CMIP5 NA Climates 2010-2100AD, RCP 8.5 Scenario, TIFS

description: Downscaled and debiased paleoclimatic simulations from the CMIP5 RCP8.5 scenario. Downscaled to 0.5deg lat/lon and extracted at decadal intervals from 2010 to 2100.  Downscaling follows same procedures as for paleoclimatic simulations.  These TIFS were generated from the NetCDF data, and are formatted for direct input into species distribution models.  Multiple climatic variables and models are included in this file.
DOI: 10.5061/dryad.1sf74/1
title: Occurrences data for three Northeastern-American tree species
DOI: 10.5061/dryad.2q5h1/2
title: growth and mort code simple

description: R script for the growth and mortality models
DOI: 10.5061/dryad.2qv8n/1
title: data1

description: This file was used for the analysis of variability; the file itself contains the description of the columns
DOI: 10.5061/dryad.2qv8n/2
title: data2

description: This file was used for the fitness analysis; the file itself contains the description of the columns
DOI: 10.5061/dryad.2qv8n/3
title: pedigree

description: This file contains the pedigree data used for the genetic analysis of fledging weight and its variability
DOI: 10.5061/dryad.2s8rr/1
title: patches

description: Table of residence time patches: foraging locations visited by red knots, deployed with radiotransmitters, during the low tide. A description of each column can be found in a separate sheet. Further information is found in the methods section of the publication.
DOI: 10.5061/dryad.2s8rr/2
title: benthos

description: Table containing sampled prey items for the red knot, consisting of molluscs of ingestable sizes in the top 4 cm of the sediment. The file contains a separate sheet with column discriptions. More information can be found in the methods section of the publication.
DOI: 10.5061/dryad.31j20/1
title: CovMatrix Symmetric component

description: Covariance matrix for the symmetric component of shape obtained by conducting the Procrustes ANOVA procedure implemented in MorphoJ
DOI: 10.5061/dryad.31j20/2
title: CovMatrix Asymmetry component

description: Covariance matrix for the asymmetric component of shape obtained by conducting the Procrustes ANOVA procedure implemented in MorphoJ
DOI: 10.5061/dryad.31j20/3
title: PC scores Symmetric component

description: PC scores obtained from the PC analysis carried out for the symmetric component of shape.
DOI: 10.5061/dryad.31j20/4
title: PC scores Asymmetry component

description: PC scores obtained from the PC analysis carried out for the asymmetric component of shape.
DOI: 10.5061/dryad.31j20/5
title: CS

description: Values of the symmetric centroid size and the logarithm of the symmetric centroid size.
DOI: 10.5061/dryad.3n901/1
title: HCC_biomarker_160206_data
DOI: 10.5061/dryad.4h263/1
title: Modulation of olfactory learning in honey bees data
DOI: 10.5061/dryad.60084/1
title: Hutchison et al Mussel Burial Data

description: Indexed data where: VORT = experimental tank number; duration = burial time in days; depth = burial depth in cm; sediment = c coarse, m medium, f fine; length = length of mussel in mm; width = width of mussel in mm; died = 0 no 1 yes; treatment = t treatment c control; temp = cold 8 degrees, ambient 14.5 degree, warm 20 degrees; depth = control free, control in chamber, shallow 2cm, medium 5cm, deep 7cm; duration = in days post start; position = position in VORT, inside or outside; pre- post- burial = number of byssus plaques laid before or after sediment burial; petri = pertidish; pot = burial chamber; sed = sediment; CI-grav = gravitational condition index; CI-shell = shell condition index.
DOI: 10.5061/dryad.60hp6/10
title: Python Plotting Scripts

description: Python written plotting scripts, which are used to generate the figures in the paper.
DOI: 10.5061/dryad.60hp6/7
title: OR-XOR-EQU Experiment Data

description: This data package contains PA and P&CC networks from the OR-XOR-EQU experiment.  The two XML files contain the serialization of each network at the 0th and 2500th generations. In the individual.log file, the performance, modularity, hierarchy, and connection cost of a network are provided. The percentage of sub-problems that a network solves is in solvent.txt file.
DOI: 10.5061/dryad.60hp6/8
title: Three_Outputs_Problem_Experiment_Data

description: Network data from the experiment that evovled networks to solve the three-output problem. These data contain XML serialized PA and P&CC networks at the 0th and 2500th generations.
DOI: 10.5061/dryad.60hp6/9
title: Two-Output Experiment Data

description: Network data from the experiment that involved three outputs problem. These data contain XML serialized PA and P&CC networks at the 0th and 2500th generations.
DOI: 10.5061/dryad.61f72/1
title: Hagman and Ord Am Nat Hyoid data

description: Data collected from museum specimens.
DOI: 10.5061/dryad.820j2/1
title: parameters_BSpline_for_SI

description: Code used for landmark registration and elastic deformation of volumes
DOI: 10.5061/dryad.820j2/2
title: R_kimberleyensis_Endocast_001

description: Rhinodipterus endocast STL file
DOI: 10.5061/dryad.820j2/3
title: Neoceratodus_Endocast_STL

description: Neoceratodus endocast STL file
DOI: 10.5061/dryad.820j2/4
title: Neoceratodus_Brain_STL

description: Neoceratodus brain STL file
DOI: 10.5061/dryad.9rj26/1
title: PHE&RoleStress_Final

description: This data set is for PHE study. It includes variables, Sunlight, Natural elements (Greenery), role stressors, job satisfaction, organizational commitment (or satisfaction), depression and anxiety. In addition, data were collected from two countries, U.S and India (name of variable: Country).
DOI: 10.5061/dryad.9rj26/2
title: SI files_table, figure and scale. PHE

description: It is a collection of the supporting files for PHE, including tables, figures and scales.
DOI: 10.5061/dryad.bm82c/1
title: Trace elements in soils and plants from Guadiamar River Valley (SW Spain)

description: This data set contains information on chemical composition of soils and woody plant biomass from the Guadiamar River Valley (SW Spain). The data set corresponds to a series of environmental surveys conducted in the Guadiamar River Valley (SW Spain), to monitor de fate of contaminating trace-elements in soils and aboveground plant biomass (main tree species), after a huge mine accident that released acid waters and trace-element contaminated sludge into the Guadiamar River basin. Data included in this set were gathered in Autumn 2005, six years after the mining accident (occurred in April 1998) and subsequent remediation programme.
DOI: 10.5061/dryad.d1b7h/2
title: Sporozoite Prevalence over Time

description: Data for prevalence of sporozoites in dissected mosquitoes from days 9-16 following infectious blood meal. "1" indicates presence of sporozoites; "0" indicates no sporozoites present
DOI: 10.5061/dryad.d1b7h/3
title: oocyst prevalence and intensity over time

description: Prevalence and intensity of oocysts in dissected midguts on days 5-10 following an infectious blood meal. For prevalence, "1" indicates oocysts were present, "0" indicates no oocysts present.
DOI: 10.5061/dryad.d1b7h/4
title: R Code for Analysis of infection dynamics

description: R code for analysis of infection dynamics
DOI: 10.5061/dryad.d1b7h/5
title: EIPSurvivalAnalysis

description: R Code for parametric survival analysis on both blocks & food groups
DOI: 10.5061/dryad.fs348/1
title: Tick-borne disease surveillance data

description: Town-level Lyme disease and babesiosis surveillance data for Connecticut, Rhode Island, and Massachusetts.  Case numbers are redacted for any town reporting &lt;5 cases in a given year.  NAs indicate years in which no surveillance data was available (see Table S1).
DOI: 10.5061/dryad.gb6g6/1
title: F2 genotypes for linkage mapping

description: Raw genotypes for 966 markers (obtained from RNA-seq data) for 64 F2 individuals from a cross between Senecio aethnensis and S. chrysanthemifolius
DOI: 10.5061/dryad.h7vb0/1
title: LeMoan_Atlantic_anchovy_working_dataset_MAC1_1SNPperRAD

description: The Atlantic subdataset containing 5260 SNPs typed 41 non-admixed individuals that were classified either as pure marine (30 PM) or pure coastal (11 PC) ecotypes using a 95% assignment probability threshold in NewHybrids. The minor allele count (MAC) threshold is 1 and only one SNP per RAD was kept.
DOI: 10.5061/dryad.h7vb0/2
title: LeMoan_Mediterranean_anchovy_working_dataset_MAC1_1SNPperRAD

description: The Mediterranean subdataset containing 6554 SNPs typed in 48 non-admixed individuals that were classified either as pure marine (17 PM) or pure coastal (31 PC) ecotypes using a 95% assignment probability threshold in NewHybrids. The minor allele count (MAC) threshold is 1 and only one SNP per RAD was kept.
DOI: 10.5061/dryad.h7vb0/3
title: LeMoan_4_pops_no_hybrid_anchovy_working_dataset_MAC1_1SNPperRAD

description: The 4 populations dataset containing 3056 SNPs typed in 89 non-admixed individuals that were classified either as pure marine or pure coastal ecotypes using a 95% assignment probability threshold in NewHybrids. The minor allele count (MAC) threshold is 1 and only one SNP per RAD was kept.
DOI: 10.5061/dryad.hm23p/1
title: SNP genotypes of Asian seabass

description: The genotype dataset contains 32433 ddRAD-based SNP loci for 131 individuals across 6 wild populations of Asian seabass.
DOI: 10.5061/dryad.j21v2/1
title: Seed and tuber production of Dicentra canadensis

description: Demographic census data collected for three Dicentra canadensis populations in Ohio during 2008 - 2011. Data were recorded in late spring, at the end of the species' growing season each year.  This data file includes: life stages of individual plants at census time, number of seeds and clonal propagules (secondary tubers) produced per plant, and mass of primary tubers, as a measure of size of individual plants. Data for manipulative pollination experiments (supplemental pollination and pollinator exclusion) are also included.
DOI: 10.5061/dryad.jm676/1
title: Movid duck locations
DOI: 10.5061/dryad.kv09p/1
title: PollNetAnalaysis_RSOS

description: This folder contains scripts and datasets used for the paper“Geographical variation in the heterogeneity of mutualistic networks” by Sakai et al.
DOI: 10.5061/dryad.p066m/1
title: Raw data and statistical analysis

description: Raw data and statistical analysis of all results in this paper
DOI: 10.5061/dryad.p8s0j/1
title: URLs of news articles.

description: URLs for the 2,353,652 news articles covered in the study, as collected from the main feeds of the online news outlets.
DOI: 10.5061/dryad.pc307/1
title: North Lake Road garlic mustard transect data

description: METADATA FOR NORTH LAKE ROAD GARLIC MUSTARD TRANSECT DATAEach transect is 20m long, with rebar at each end. Each row in dataset is a transect.Columns:- Transect number- Latitude and Longitude. All data is Zone 18N- Order along road. I recommend sorting by this column for sampling, since it differs from transect number.- Side of Road. Left or Right, starting at western most (entrance) part of road to North Lake.- Columns F to N – Number of adult garlic mustard counted. See Methods for details. For all dates except July 07 and July 2010, sampling was before management. July sampling periods were recensuses after management to gauge control efficiency.