cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16908527
title: Geolocation-Corrected GEDI L2A Footprints in Japan (2019–2023)

description: Abstract

This dataset contains geolocation-corrected GEDI (Global Ecosystem Dynamics Investigation) L2A footprints collected between 2019 and 2023 across Japan. Utilizing publicly available DEM covering 153,670.85 km² of Japan’s land area, we applied correction methods to over 2.7 million forest footprints. Among them, 1.84 million observations were successfully corrected. Validation using independent airborne LiDAR-derived canopy height data demonstrated a significant accuracy improvement, with the relative root mean squared error reduced from 35.55% to 21.07%.

Note that only footprints located within forested areas and covered by DEM data are retained, and footprints where correction failed have been excluded.

---------------------------------------------------------------------------------------------------------------------------------------------

Time span: 2019–2023

Coordinate system: WGS84 (EPSG:4326)

---------------------------------------------------------------------------------------------------------------------------------------------

Variables in dataset








Column
Description




sen
Beam sensitivity (from original GEDI L2A)


G_ele
GEDI terrain elevation at the original footprint location(from original GEDI L2A)


TanX_ele
TanDEM or auxiliary DEM terrain elevation at the original footprint location(from original GEDI L2A)


algorithm
GEDI algorithm (from original GEDI L2A)


solar_elev
Solar elevation at acquisition time (from original GEDI L2A)


beams
GEDI beams id (from original GEDI L2A)


dates
Acquisition date (from original GEDI L2A)


orbit
GEDI orbit number (from original GEDI L2A)


orig_mae
Absolute difference between original GEDI terrain elevation and ALS DEM


best_mae
Absolute difference between corrected GEDI terrain elevation and ALS DEM


shift_x
Applied offset in the X direction (meters) for correction


shift_y
Applied offset in the Y direction (meters) for correction


year
Acquisition year


geometry
Corrected footprint location in EPSG:4326
DOI: 10.15468/dl.ufs244
title: Occurrence Download

description: A dataset containing 1328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Eragrostis dielsii Pilg.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1328 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011989-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57cm22
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Talismania antillarum (Goode & Bean, 1896)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 -16.1504,17.9648 -16.1504,17.9648 -25.1504,26.9648 -25.1504,26.9648 -16.1504))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011988-250525065834625/datasets/export for details.
DOI: 10.15468/dl.z56jd5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Talismania antillarum (Goode & Bean, 1896)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 10.8496,17.9648 10.8496,17.9648 1.8496,26.9648 1.8496,26.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011990-250525065834625/datasets/export for details.
DOI: 10.15468/dl.kxjr3n
title: Occurrence Download

description: A dataset containing 443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Eragrostis spectabilis (Pursh) Steud.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 443 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011991-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7756w
title: Occurrence Download

description: A dataset containing 974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bradybaena similaris (A.Férussac, 1822)"
 ]
}

 The dataset includes 974 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011992-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqq2an
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Talismania antillarum (Goode & Bean, 1896)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 1.8496,17.9648 1.8496,17.9648 -7.1504,26.9648 -7.1504,26.9648 1.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011993-250525065834625/datasets/export for details.
DOI: 10.15468/dl.mwk9em
title: Occurrence Download

description: A dataset containing 835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Eremogone congesta (Nutt. ex Torr. & A.Gray) Ikonn.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 835 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011994-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmbspj
title: Occurrence Download

description: A dataset containing 43248 records in GBIF matching the query:
SELECT
 "year",
 GBIF_EQDGCODE(3, decimallatitude, decimallongitude, 0.0) eqdcellcode,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'CO'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2000 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence."year",
 GBIF_EQDGCODE(3, decimallatitude, decimallongitude, 0.0)

 The dataset's 43248 records were derived from 3249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011982-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4n39t
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016245-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17794453
title: Inflammatory markers in primary and secondary premature ejaculation: clinical significance of the neutrophil-to-lymphocyte and platelet-to-lymphocyte ratios

description: dataset
DOI: 10.5281/zenodo.18433793
title: Inflammatory markers in primary and secondary premature ejaculation: clinical significance of the neutrophil-to-lymphocyte and platelet-to-lymphocyte ratios

description: dataset
DOI: 10.15468/dl.qsz4rq
title: Occurrence Download

description: A dataset containing 644530 records in GBIF matching the query:
SELECT
 "gbifid", "eventdate",
 MAX("eventdate") OVER (
 ORDER BY "gbifid"
 ROWS BETWEEN UNBOUNDED PRECEDING AND CURRENT ROW
 ) AS "running_max_eventdate"
 FROM occurrence
 WHERE 
 ("gbifid" &gt;= 5938027305) AND ("datasetkey" IN ('50c9509d-22c7-4a22-a47d-8c48425ef4a7', '4fa7b334-ce0d-4e88-aaae-2e0c138d049e'))
 LIMIT 1000000

 The dataset's 644530 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002268-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31211752
title: Data + shp

description: Dataset and shapefiles
DOI: 10.6084/m9.figshare.31211752.v1
title: Data + shp

description: Dataset and shapefiles
DOI: 10.17026/dans-xcw-4x4c
title: Culturele Veranderingen in Nederland 2010 - CV'10

description: &lt;p&gt;Het onderzoek Culturele Veranderingen in Nederland (CV) is een 2-jaarlijks onderzoek dat in 2010 in een samenwerkingsproject werd uitgevoerd door het Sociaal en Cultureel Planbureau (SCP) en het Centraal Bureau voor de Statistiek (CBS). Doel van het onderzoek is vaststellen welke opvattingen 'de Nederlander' heeft over samenleving en cultuur en hoe deze in de loop van de tijd zijn veranderd. Het onderzoek is sinds 1975 bijna jaarlijks en vanaf 2000 tweejaarlijks uitgevoerd. Voor het onderzoek worden personen van 16 jaar en ouder in particuliere huishoudens ondervraagd. Dit bestand is vergelijkbaar met de voorgaande versies van de SCP onderzoeken over culturele veranderingen (ook beschikbaar via DANS).&lt;/p&gt;&lt;p&gt;Het volledige bestand incl. aanvullende variabelen uit diverse CBS registers, kan 'onsite' of via 'remote access' bij het Centrum voor Beleidsstatistiek van het CBS geraadpleegd worden. Deze microversie bevat een deelverzameling van de variabelen uit het volledige onderzoeksbestand.&lt;/p&gt;&lt;p&gt;Inhoud van de vragenlijst:&lt;br&gt;Eigen leven, Welvaart en Sociale zekerheid / Geloof / Vertrouwen en Samenleving / Politiek en Democratie / Misdaad /&lt;br&gt;Verlenen van Hulp en Morele Kwesties / Positie van de vrouw / Positie van allochtonen.&lt;/p&gt;
DOI: 10.82144/87836f3b
title: Sightings of Atlantic Pygmy Devil Ray and other devil rays in waters of the Republic of the Congo

description: Original provider:
Marijke N. de Boer

Dataset credits:
Marijke N. de Boer

Abstract:
The Mobula communities inhabiting eastern tropical Atlantic (ETA) waters along the west coast of Africa are globally amongst the most poorly studied. The limited recent information available is derived mainly from the monitoring of strandings and fisheries interactions at landing sites. However, little is known about the habitat preferences of the species that occur off Congo because at-sea sightings have rarely been published. 

Mobula hypostoma, Atlantic Pygmy Devil Rays, were observed during megafauna surveys in the shallow coastal waters off the Republic of the Congo. These are the first records of this species in its natural habitat in Congolese waters, which may well offer an important habitat for these coastal batoids, but further research is needed. There is an urgent need for management measures to protect M. hypostoma throughout its African range, particularly in view of the recent increase in fishing activities within the region.
DOI: 10.5517/ccdc.csd.cc28zllg
title: CCDC 2114776: Experimental Crystal Structure Determination

description: Related Article: Qiuyue Wu, Ning Chen, Jiaxi Xu|2022|Chem. Sel.|7|e20210394|doi:10.1002/slct.202103943
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17026/dans-z5j-9bkf
title: Beveiligde microbestanden CBS en over de toegang tot CBS data

description: &lt;p&gt;Beveiligde micro-bestanden van het Centraal Bureau voor de Statistiek - CBS, zijn bestanden die zodanig bewerkt zijn dat herkenning van individuen en huishoudens uitgesloten is. De beveiligde microbestanden kunnen kosteloos uit EASY gedownload worden. Regelmatig komen nieuwe versies beschikbaar.&lt;/p&gt;
DOI: 10.5281/zenodo.17474112
title: Data from: Impact of rare and common genetic variation on cell type-specific gene expression in human blood

description: This dataset contains the association summary statistics for the common and rare variant single-cell expression quantitative trait (eQTL) analysis of TenK10K Phase 1 (https://www.medrxiv.org/content/10.1101/2025.03.20.25324352v1). 

Briefly, the files included are as follows:



common_variant_gene_level_results_with_annotated_fails.zip:  gene-level results (top variant only) for common variant (MAF>=1%) cis eQTL mapping with a +/- 100kb window (one file for each of the 28 immune cell types assessed) - genes for which there wasn't a convergence issue and could not be assessed are annotated as such at the end of each file

common_all_cis_pvalues_100kb.zip: full summary statistics for common variant cis eQTL mapping with a +/- 100kb window (one file for each of the 28 immune cell types assessed)

partt{1-7}_common_all_cis_pvalues_1Mb.zip: full summary statistics for common variant cis eQTL mapping with a +/- 1Mb window (one file for each of the 28 immune cell types assessed; split across 7 zipped folders because of size)

rare_variant_gene_level_results.zip: rare variant gene-level results, including SKAT and burden test results with three sets of weights when testing for the effects of all rare (MAF<1%) cis variants within a +/- 100kb window around the gene

rare_variant_gene_level_results_functional_annotations.zip: equivalent to the above but results when including variants that are annotated to be functional or in open chromatin regions - note that this is for 26 cell types only because for 2 we did not have sufficient scATAC-seq counts for the open chromatin annotation

rare_all_cis_pvalues_100kb_single_variant_test.zip: full single-variant test for rare variants cis eQTL mapping with a +/- 100kb window (one file for each of the 28 immune cell types assessed)

susie_summary.zip: fine-mapping results using SuSie based on the 100kb common variant sc-eQTL results. All variants included in a credible set (95% CI) are included, regardless of PIP (one file per cell type)

coloc_100kb.zip: colocalisation results using COLOC based on the 100kb common variant sc-eQTL results. The files are organised by trait, cell type and chromosome.

results_iscovariateoffset_true.zip: common variant results when re-running failures, using isCovariateOffset = TRUE. Both full summary statistics and gene-level results are provided, the latter with annotated the last genes that still did not converge
DOI: 10.5281/zenodo.18221260
title: Data from: Impact of rare and common genetic variation on cell type-specific gene expression in human blood

description: This dataset contains the association summary statistics for the common and rare variant single-cell expression quantitative trait (eQTL) analysis of TenK10K Phase 1 (https://www.medrxiv.org/content/10.1101/2025.03.20.25324352v1). 

Briefly, the files included are as follows:



common_variant_gene_level_results_with_annotated_fails.zip:  gene-level results (top variant only) for common variant (MAF>=1%) cis eQTL mapping with a +/- 100kb window (one file for each of the 28 immune cell types assessed) - genes for which there wasn't a convergence issue and could not be assessed are annotated as such at the end of each file

common_all_cis_pvalues_100kb.zip: full summary statistics for common variant cis eQTL mapping with a +/- 100kb window (one file for each of the 28 immune cell types assessed)

partt{1-7}_common_all_cis_pvalues_1Mb.zip: full summary statistics for common variant cis eQTL mapping with a +/- 1Mb window (one file for each of the 28 immune cell types assessed; split across 7 zipped folders because of size)

rare_variant_gene_level_results.zip: rare variant gene-level results, including SKAT and burden test results with three sets of weights when testing for the effects of all rare (MAF<1%) cis variants within a +/- 100kb window around the gene

rare_variant_gene_level_results_functional_annotations.zip: equivalent to the above but results when including variants that are annotated to be functional or in open chromatin regions - note that this is for 26 cell types only because for 2 we did not have sufficient scATAC-seq counts for the open chromatin annotation

rare_all_cis_pvalues_100kb_single_variant_test.zip: full single-variant test for rare variants cis eQTL mapping with a +/- 100kb window (one file for each of the 28 immune cell types assessed)

susie_summary.zip: fine-mapping results using SuSie based on the 100kb common variant sc-eQTL results. All variants included in a credible set (95% CI) are included, regardless of PIP (one file per cell type)

coloc_100kb.zip: colocalisation results using COLOC based on the 100kb common variant sc-eQTL results. The files are organised by trait, cell type and chromosome.

results_iscovariateoffset_true.zip: common variant results when re-running failures, using isCovariateOffset = TRUE. Both full summary statistics and gene-level results are provided, the latter with annotated the last genes that still did not converge
DOI: 10.6084/m9.figshare.29592026
title: <i>Tetraopes </i>milkweed beetle genomes elucidate the adaptive basis of a temperate coevolutionary radiation

description: The coevolutionary radiation of 27 species of <i>Tetraopes </i>longhorned beetles and their <i>Asclepias</i> milkweed hosts represents a classic example of adaptive evolution driven by plant chemical defenses and herbivore counteradaptations. Investigations to date, however, have focused on a single species, <i>Tetraopes tetrophthalmus</i>, which feeds on the moderately toxic <i>Asclepias syriaca</i>, providing limited comparative data for hypothesis-testing. Here, we present reference-quality genomes for three <i>Tetraopes</i> species—<i>T</i>. <i>sublaevis</i>, <i>T</i>. <i>tetrophthalmus</i>, and <i>T</i>. <i>melanurus</i>—each largely specialized on an <i>Asclepias</i> host with distinct cardenolide toxicity, to investigate the genomic basis of their adaptations to evolving plant defenses. We identify key amino acid substitutions in the Na<sup>+</sup>/K<sup>+</sup>-ATPase α1 associated with cardenolide resistance, with additional changes in species feeding on hosts with more toxic cardenolides. We reveal expansions and relaxed purifying selection on ABC transporter and peritrophic membrane protein genes, with positive selection within <i>T. sublaevis</i> that may facilitate tolerance and sequestration of highly potent nonpolar cardenolides present in <i>Asclepias erosa</i>. Parallel selective pressures on serine endopeptidase genes suggest counteradaptations to root-specific protease inhibitors. In addition, <i>Tetraopes</i>-specific expansions of plant cell wall-degrading enzymes, including GH5_2 hemicellulases and GH28 pectinases, reflect adaptations to digest herbaceous milkweed tissues. These findings illuminate the apparent genomic underpinnings of putative adaptation in <i>Tetraopes</i> beetles to phytochemical and structural defenses of their <i>Asclepias </i>hosts.
DOI: 10.6084/m9.figshare.29592026.v1
title: <i>Tetraopes </i>milkweed beetle genomes elucidate the adaptive basis of a temperate coevolutionary radiation

description: The coevolutionary radiation of 27 species of <i>Tetraopes </i>longhorned beetles and their <i>Asclepias</i> milkweed hosts represents a classic example of adaptive evolution driven by plant chemical defenses and herbivore counteradaptations. Investigations to date, however, have focused on a single species, <i>Tetraopes tetrophthalmus</i>, which feeds on the moderately toxic <i>Asclepias syriaca</i>, providing limited comparative data for hypothesis-testing. Here, we present reference-quality genomes for three <i>Tetraopes</i> species—<i>T</i>. <i>sublaevis</i>, <i>T</i>. <i>tetrophthalmus</i>, and <i>T</i>. <i>melanurus</i>—each largely specialized on an <i>Asclepias</i> host with distinct cardenolide toxicity, to investigate the genomic basis of their adaptations to evolving plant defenses. We identify key amino acid substitutions in the Na<sup>+</sup>/K<sup>+</sup>-ATPase α1 associated with cardenolide resistance, with additional changes in species feeding on hosts with more toxic cardenolides. We reveal expansions and relaxed purifying selection on ABC transporter and peritrophic membrane protein genes, with positive selection within <i>T. sublaevis</i> that may facilitate tolerance and sequestration of highly potent nonpolar cardenolides present in <i>Asclepias erosa</i>. Parallel selective pressures on serine endopeptidase genes suggest counteradaptations to root-specific protease inhibitors. In addition, <i>Tetraopes</i>-specific expansions of plant cell wall-degrading enzymes, including GH5_2 hemicellulases and GH28 pectinases, reflect adaptations to digest herbaceous milkweed tissues. These findings illuminate the apparent genomic underpinnings of putative adaptation in <i>Tetraopes</i> beetles to phytochemical and structural defenses of their <i>Asclepias </i>hosts.