cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sjz9jpmfy3
title: Transition from kinetic to equilibrium Zr isotope fractionations during magma crystallization

description: This data contain all supplemantry materials associated with the manuscript: Transition from kinetic to equilibrium Zr isotope fractionations during magma crystallization.
DOI: 10.6084/m9.figshare.5024426.v2
title: Variational Bayes With Intractable Likelihood

description: Variational Bayes (VB) is rapidly becoming a popular tool for Bayesian inference in statistical modeling. However, the existing VB algorithms are restricted to cases where the likelihood is tractable, which precludes their use in many interesting situations such as in state--space models and in approximate Bayesian computation (ABC), where application of VB methods was previously impossible. This article extends the scope of application of VB to cases where the likelihood is intractable, but can be estimated unbiasedly. The proposed VB method therefore makes it possible to carry out Bayesian inference in many statistical applications, including state--space models and ABC. The method is generic in the sense that it can be applied to almost all statistical models without requiring too much model-based derivation, which is a drawback of many existing VB algorithms. We also show how the proposed method can be used to obtain highly accurate VB approximations of marginal posterior distributions. Supplementary material for this article is available online.
DOI: 10.17632/8zrzzsxkcm
title: Obtaining buildings' base case and electrified hourly energy consumption using building energy analysis with EnergyPlus and OpenStudio

description: Data sets used in Khosravani et al., 2024 - Electrification of residential and commercial buildings integrated with hybrid renewable energy systems: A techno-economic analysis. (For citation: https://doi.org/10.1016/j.energy.2024.131893)
Using building energy analysis, we obtained the base case hourly electricity and natural gas loads and the hourly electrified load. We used the Department of Energy's reference building models as they are for the base case scenario. We replaced the conventional HVAC system with an air-source heat pump for the electrified scenario.
Please note that JSON files for DOE reference building models have been reproduced and published for the public use.
DOI: 10.6084/m9.figshare.19114871.v3
title: Brunswick Valley Heritage Park Maslen Arboretum Map

description: A booklet presenting a series of maps of the trees of Maslen Arboretum, Brunswick Valley Heritage Park, Mullumbimby NSW Australia.
DOI: 10.6084/m9.figshare.24547810.v3
title: Wind 1996-2022 SMFR Event Dataset

description: Description of events.csv:event_number, start_time, end_time: Self evident; end time is exclusiveduration: in hoursdiameter: in km, see paper for how it is calculatedwalen_slope: dimensionless. positive/negative -&gt; flow parallel/antiparallel to magnetic field linesvelocity_x,velocity_y,velocity_z: HT frame in GSE coordinatesaxis_x,axis_y,axis_z: flux rope z (2D/cylindrical/whatever you want to call it) axis components in GSE coordinatesavg_Np: per ccavg_Tp: eVavg_B: nTavg_Bz: nT, in GSE coordinates (useful for space weather)<br>events_1hr+.csv is much smaller because it excludes events below an hour long (most events) perhaps useful for space weather comparison <br>images/ directory contains plots for each event, event_#.jpg corresponds to event_number=# in the CSV file
DOI: 10.6084/m9.figshare.25405462.v1
title: Data sets for "<b>The redox state of asthenospheric mantle and the onset of melting beneath mid-ocean ridges</b>"

description: The redox state of the convective asthenospheric mantle governs the speciation of volatile elements, such as carbon, therefore influences the depth at which (redox) melting can occur with implications for the seismic signals. Geophysical observations suggest the potential presence of carbonatite melts at depth of 200–250 km, however, thermodynamic models indicate the onset of (redox) melting would occur at 100–150 km for a mantle with 3–4 % of Fe<sup>3+</sup>/∑Fe. Here we present a new oxybarometer that based on the V/Sc exchange coefficient between olivine and melt, which is insensitive to surficial alteration, volatile degassing, electron exchange reactions and fractional crystallization. By applying this method to primary mid-ocean ridge basalts (MORBs) from Southwest Indian Ridge and East Pacific Rise, we demonstrate that the average oxygen fugacity (<i>f</i>o<sub>2</sub>) of MORBs corrected for the depth of formation is 0.78±0.26 (1) log units above the fayalite-magnetite-quartz (FMQ) buffer, which is slightly more oxidized than previously estimated (near FMQ buffer). Our findings indicate that the convective asthenospheric mantle exhibits a higher oxygen fugacity than continental lithospheric mantle. Along an adiabat, carbonatitic melts can form from a CO<sub>2</sub>-bearing source at depth of 200–250 km explaining, therefore, the electrical conductivity and seismic velocity anomaly of the asthenospheric mantle.
DOI: 10.6084/m9.figshare.28769183.v1
title: monocytes in NASH-qPCR data.rar

description: Under lipotoxic conditions, <i>Sdc4</i>-deficient (sh-<i>Sdc4</i>) monocytes exhibited upregulated expression of <i>CD206</i> (an M2 marker) and <i>IL-10</i>. When cocultured with <i>sh-Sdc4 </i>monocytes under palmitic acid stimulation, HepG2 cells accumulated fewer lipid droplets and produced<b> </b>less<b> </b>TNF-α protein, along with increased <i>IL-10</i> genes, compared to controls.
DOI: 10.6084/m9.figshare.5350786.v6
title: [A Procedure for Multilevel Logistic Modeling] Appendix, Datasets, and Syntax Files

description: - For each software, a series of sub-appendices describes the way to handle each stage of the procedure;<br>- For each software, a .zip file contains the dataset in .dta (for Stata), .rdata (for R), .dat (for Mplus), and .sav (for SPSS), as well as the syntax file(s) in .do (for Stata), .R (for R), .inp (for Mplus), and .sps (for SPSS)- The dataset is also provided in .csv format.<br><br>If you notice a mistake in the Stata or SPSS-related Appendices and/or syntax files, please report it to Nicolas Sommet (nicolas.sommet@unil.ch). If you notice a mistake in the R or Mplus-related Appendices and/or syntax files, please report it to Davide Morselli (davide.morselli@unil.ch).<br><br>Sommet, N. and Morselli, D. (2017). Keep Calm and Learn Multilevel Logistic Modeling: A Simplified Three-Step Procedure Using Stata, R, Mplus, and SPSS. <i>International Review of Social Psychology</i>, <i>30</i>, 203–218, DOI: https://doi.org/10.5334/irsp.90<br>
DOI: 10.6084/m9.figshare.10042319.v3
title: Cognitive bias and perseverance

description: Behavioral data from an experiment of reinforcement learning in humans.
DOI: 10.6084/m9.figshare.15018966.v1
title: Supplemental Materials for Breast cancer endocrine therapy promotes weight gain and glucose intolerance with distinct effects on adipose tissue in lean and obese female mice

description: Supplemental figures and tables referenced in the manuscript <i>Breast cancer endocrine therapy promotes weight gain and glucose intolerance with distinct effects on adipose tissue in lean and obese female mice. </i>
DOI: 10.6084/m9.figshare.18973658.v1
title: Supplementary Material for: MicroRNA Expression Profiles as Diagnostic and Prognostic Biomarkers of Perinatal Asphyxia and Hypoxic-Ischaemic Encephalopathy

description: <b><i>Introduction:</i></b> Perinatal asphyxia is a leading cause of neonatal death. Up to one-third of asphyxiated neonates suffer from hypoxic-ischaemic encephalopathy (HIE) with substantial long-term morbidity. Currently available diagnostic and prognostic tools bear limitations, and additional reliable biomarkers are needed for all stages of clinical management. A novel tool in neuroscientific research is micro-ribonucleic acid (miRNA) profiling. The aim of the present study was to determine miRNA expression profiles of healthy and asphyxiated neonates with and without HIE and to assess their potential as diagnostic and prognostic biomarkers. <b><i>Methods:</i></b> We prospectively enrolled 49 neonates with a gestational age of ≥36 weeks, 15 of which fulfilled the diagnostic criteria of perinatal asphyxia and 34 served as healthy controls. Dried blood spots were collected from umbilical cord blood (UCB) and from venous blood upon admission to neonatal intensive care unit (NICU) and at 48 h of life. Samples were analysed by means of FirePlex™ technology (Abcam, Cambridge, MA, USA). <b><i>Results:</i></b> In the UCB, miRNA expression levels of hsa-mir-124-3p, hsa-mir-1285-5p, and hsa-mir-331-5p were significantly lower in asphyxiated neonates compared to healthy controls. Asphyxiated neonates requiring therapeutic hypothermia had significantly increased expression of hsa-miR-30e-5p and significantly decreased expression of hsa-miR-142-3p, hsa-miR-338-3p, hsa-miR-34b-3p, hsa-miR-497-5p, and hsa-miR-98-5p at the time of admission to the NICU. At 48 h, infants suffering from moderate/severe HIE with a poor long-term neurodevelopmental outcome showed a significant increase in hsa-mir-145-5p. <b><i>Discussion/Conclusion:</i></b> MiRNA profiling shows promise as a biomarker for perinatal asphyxia, hypothermia-requiring HIE, and poor neurodevelopmental outcome. Confirmatory studies are called for.
DOI: 10.6084/m9.figshare.25002590.v1
title: The data includes information on the expression levels of genes and their isoforms, as well as the classification and sequences of TF

description: The data includes information on the expression levels of genes and their isoforms, as well as the classification and sequences of transcription factors of Gossypium purpurascens
DOI: 10.6084/m9.figshare.8274266.v1
title: Additional file 1: of Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle

description: Table S1. Phenotype records and metadata for each individual. (XLSX 171 kb)
DOI: 10.17632/j2t89njrft
title: Can ChatGPT Vision Diagnose Melanoma? An Exploratory Diagnostic Accuracy Study - Supplemental material

description: - Mendeley Supplemental Table 1. Raw study data Including ISIC image ID, Histopathologically Confirmed Diagnosis, Top-3 Differential Diagnoses by ChatGPT Plus, and corresponding Top-1 and Top-3 diagnoses evaluations (0=No, 1=Yes).
- Mendeley Supplemental Figure 1. Representative examples of images from the dataset.
- Mendeley Supplemental Figure 2. Examples of images of falsely diagnosed pigmented lesions by ChatGPT Vision.
DOI: 10.6084/m9.figshare.12187794.v1
title: Dataset for NCOMMS-19-32312A

description: Original dataset for manuscript NCOMMS-19-32312A
DOI: 10.6084/m9.figshare.15000669.v1
title: Plot_Covariates_degradation.xlsx

description: Data based on 160 temporal plots (400 m2) across several degrees of forest degradation. It contains tree density per hectare, basal area per hectare and species richness of stems according to their diameter at breast height.
DOI: 10.17632/t3wnsp6v64
title: GC-MS/MS and HR-LCMS-QTOF Analysis of various extracts of Saraswata Ghrita: A comprehensive dataset on phytochemical compounds

description: This dataset provides a comprehensive phytochemical profile of Saraswata Ghrita, a classical Ayurvedic formulation traditionally used for cognitive enhancement. To capture its diverse bioactive constituents, three different extracts—methanol, hexane, and hexane-ethanol—were analyzed using Gas Chromatography-Mass Spectrometry (GC-MS/MS) and High-Resolution Liquid Chromatography-Mass Spectrometry-Quadrupole Time-of-Flight (HR-LCMS/MS-QTOF). The dataset includes volatile and semi-volatile compounds identified through GC-MS/MS, while HR-LCMS/MS-QTOF facilitates the characterization of non-volatile and polar metabolites. Advanced chromatographic and spectrometric techniques were employed, integrating mass spectrometric detection, retention time analysis, and cheminformatics-based compound classification. Spectral data were processed using multiple databases, ensuring accurate compound annotation. Additionally, key parameters such as molecular weight, chemical structure, base peak intensity, and ion fragmentation patterns were recorded to aid in structural elucidation. This dataset is structured for comparative metabolomics, quality control, and pharmacological exploration, offering a valuable reference for researchers investigating the phytochemical complexity of Ayurvedic formulations. The compiled raw data, including chromatograms, peak intensities, spectral fingerprints, and molecular fragmentations, are publicly available for further computational modeling and validation. The dataset can also support future drug discovery efforts, network pharmacology studies, and Ayurvedic formulation standardization, ensuring reproducibility and facilitating integrative research on traditional medicine.
DOI: 10.17632/zgxfx6xk4t
title: LBfoam: An open-source software package for the simulation of foaming using the Lattice Boltzmann Method

description: This paper presents a 2D/3D Free Surface Lattice Boltzmann Method simulation package called LBfoam for the simulation of foaming processes. The model incorporates the essential physics of foaming phenomena: gas diffusion into nucleated bubbles, bubble dynamics and coalescence, surface tension, the stabilizing disjoining pressure between bubbles, and Newtonian and non-Newtonian rheological models. The software can simulate the growth and interaction of bubbles, and predict final foam structures. The implementation is based on the Palabos library (in C++), which enables large-scale parallel simulations. The software is freely available under the GNU Affero General Public License version 3.
DOI: 10.6084/m9.figshare.915439.v12
title: Fungi Classification Update 2014

description: These are working files that correspond to a project towards updating the fungal taxonomy. The tree has been built in mesquite by hand, and depecit our current knowledge in fungal systematics. This tree needs revision by the authors, so relationships might change before publication. For the taxa described after Hibbett et al. 2007, a list of references is attached. - See more at: http://figshare.com/preview/_preview/915435#sthash.24V3frT4.dpuf
DOI: 10.17632/hpt3zcg53j
title: Data from Exploring Drug Repurposing for the Treatment of Abdominal Aortic Aneurysms: A Systematic Review and Meta-analysis

description: Data from our systematic review and meta-analysis of drug repurposing for slowing the progression of abdominal aortic aneurysms.
DOI: 10.6084/m9.figshare.28100078.v1
title: Data

description: OBIA resultsCalibrating water level dataManning coefficient fieldTopographic data
DOI: 10.17632/27yhgymr8v
title: Codes and data: Interpretable Machine Learning Unveils Nonlinear Drivers of Global Energy Risk Spillovers: A TVP-VAR Approach

description: Replication files for "Interpretable Machine Learning Unveils Nonlinear Drivers of Global Energy Risk Spillovers: A TVP-VAR Approach" (Economic Modelling).
DOI: 10.6084/m9.figshare.14785056.v1
title: 2021_EM_Original_SPECT_Data

description: COLLECTION TITLE:2021_MezzengaEmilio_Collection1<br>CATEGORY:Medical Physics<br>KEYWORDS:SPECT/CT; 3D-OSEM reconstruction; radiomics; lutetium; calibration phantom.<br>ARTICLE (when using these files, please, cite the following article):"E. Mezzenga et al. Reconstructed SPECT images of 177Lu homogeneous cylindrical phantom used for calibration and texture analysis. 2021"<br>FILE NAMES:All the files in this collection follow this nomenclature: 1. "Starting_data_not_reconstructed"”: the folder contains two subfolders were the SPECT and CT phantom acquisitions are separated.In particular, the CT folder is named “CT_data”, and the SPECT one is named “SPECT_data”. In the former folder, the CT sequence of the phantom is named as: “CTxxx.dcm”, with xxx=001, 002,…, 108.In the latter there are three DICOM files related to the SPECT acquisition.In particular, the triple window (TW) file (“TW.dcm”), the lower scatter window (LScW) file (“LScW.dcm”), and the higher scatter window (HScW) file (“HScW.dcm”).The TW file contains all three acquisition windows (i.e. photopeak, high and low scatter), while LScW and HScW contain the lower and higher scatter acquisition window, respectively.2. "Reconstructed_data":it contains two subfolders related to the reconstructed CT datasets (named: “Isotropic_CT”) and reconstructed SPECT acquisition (named: “Isotropic_NM”).Both reconstructions have the same voxel dimension. In the former folder, the CT reconstructed file are named as: “IsotropicCT001_CTyyy.dcm”, with yyy=001, 002,…, 182.The latter folder contains five subfolders, each one referring to the number of subsets used in the SPECT image reconstruction process, and named “zz_SUBSETS”, with zz=05, 10, 15, 20 and 30. Each subfolder contains the SPECT reconstructed images with the same number of subsets, but different number of iterations and are named as “IsotropicNMxxSyyI_DS.dcm”, with xx=05, 10, 15, 20 and 30, and yy=01, 02, 03, 04, 05, 06, 07, 10, 15, 20, 25, 30, 35, 40, 45, 50. <br>MAIN CONTACT:- Emilio Mezzenga, Medical Physics Unit, IRCCS Istituto Romagnolo per lo Studio dei Tumori “Dino Amadori”, Meldola, Italy.Email: emilio.mezzenga@irst.emr.it<br>COPYRIGHT:* Copyright (c) 2021,* IRCCS IRST Meldola, Italy,* All rights reserved.** This material is free; you can redistribute it and/or modify it under the terms of the CC BY 4.0.* This material is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
DOI: 10.6084/m9.figshare.3525680.v1
title: Appendix A. A table showing the predator abundance manipulations.

description: A table showing the predator abundance manipulations.
DOI: 10.6084/m9.figshare.7744571.v1
title: Additional file 10: of Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information

description: The predicted lncRNA-disease associations. (TXT 180 kb)
DOI: 10.15468/dl.bnj6n6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 -7.1504,26.9648 -7.1504,26.9648 -16.1504,35.9648 -16.1504,35.9648 -7.1504))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013329-250525065834625/datasets/export for details.
DOI: 10.17632/dk6c47zzn2
title: TempDataReady

description: 65 years temperature data for Cox's Bazar, Bangladesh.
DOI: 10.6084/m9.figshare.12127425.v3
title: Growth standard comparison between WHO and Indonesian Growth Chart-Determinants Data

description: This is the data-set used to analyze the determinants of under-nutrition among children under five in Oeolo, East Nusa Tenggara, Indonesia<br>Categories for weight-age (WHO and Indonesian):1=severely underweight2=underweight3=normal<br>Categories for height-age (WHO and Indonesian):1=severely stunted2=stunted3=normal<br>Categories for maternal and paternal education:1=no education2=elementary school graduates3=junior high school graduates4=senior high school graduates5=diploma graduates<br>Categories for maternal mid-upper-arm circumference:1= &lt;=23.5 cm2= &gt;23.5 cm<br>Categories for maternal age:1= &lt;20 y.o.2= 20-35 y.o.3= &gt;35 y.0.<br>Categories for maternal height:1= &lt;150 cm2= &gt;=150 cm<br>Categories for child age:1= 0-23 months2= 24-60 months<br>Categories for child birth weight:1= &lt;2500 grams2= &gt;=2500 grams<br>Categories for gestational age:1=preterm2=aterm3=postterm<br>Categories for intrauterine growth:1=SGA (Small for gestational age)2=AGA (Appropriate for gestational age)3=LGA (large for gestational age)<br><br><br><br><br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.12869861.v3
title: OLD GT3X

description: GT3X file and CSV
DOI: 10.6084/m9.figshare.14370494.v1
title: DATASET Gases arteriales (AGA) COVID-19

description: Arterial Blood Gases (ABGs) in amazonian COVID-19 patients<br>
DOI: 10.6084/m9.figshare.21600933.v4
title: diabetes_datasets.zip

description: The datasets ShanghaiT1DM and ShanghaiT2DM comprise two folders named "Shanghai_T1DM" and "Shanghai_T2DM" and two summary sheets named "Shanghai_T1DM\_Summary" and "Shanghai_T2DM\_Summary".
DOI: 10.6084/m9.figshare.21623313.v1
title: EV fleet charging data

description: Modified EV fleet charging dataset developed by UK Department for Transport. For paper "Aggregating Electric Vehicle in the Joint Market Under Uncertainty: A Fast Polytope-based Approach"
DOI: 10.6084/m9.figshare.3077869.v1
title: Auditory Oddball

description: We adopted a roving oddball paradigm. The trains of repetitive tones of different frequencies were randomly presented. Epidural ECoG recordings were taken in the passive listening condition while monkeys were awake.<br>ECoG data were sampled at 1KHz.
DOI: 10.17632/ycg2s7drtt
title: Table S1. Modified Skindex-21 questionnaire for QoL

description: The modified Skindex-21 comprises 21 questions in four dimensions: symptoms, emotions, life and social functions, and additional occupational functions.
DOI: 10.6084/m9.figshare.21136873.v1
title: All Samples - Phenotype File

description: Phenotype information for all samples considered in this study
DOI: 10.6084/m9.figshare.28916261.v1
title: Supplementary Table14 Gene List Glycine soja Enrichment analysis.csv

description: Currently, domesticated species available on the market have been developed through the breeding of wild relatives. We collected gene expression data of domesticated species of rice, tomato, and soybean, along with their presumed ancestral species, and conducted a meta-analysis to investigate differentially expressed genes during domestication. In wild relatives, the expression of gene groups involved in osmotic, drought, and wound stress tolerance was upregulated. In contrast, in domesticated species, upregulated ex-pression was observed in gene groups related to auxin and those involved in the efflux of heavy metals and harmful substances. By identifying these genes with differential ex-pression levels, we can gain insights into how domestication has influenced changes in crop traits. In particular, breeding strategies that make use of wild relatives with high genetic diversity are attracting attention as an important approach for addressing climate change and ensuring a sustainable food supply. The findings obtained in this study are expected to contribute to the realization of rapid breeding and the development of new varieties capable of growing in harsh natural environments. To address this issue, a new cultivation method called "De novo domestication" has been proposed, which combines the genetic diversity of currently unused wild relatives and wild relatives with genome editing technologies that enable rapid breeding.