cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7478897
title: Additional file 1: of Prognostic values of S100 family members in ovarian cancer patients

description: Table S1. The mRNA expression of some S100 family members is of no apparent prognostic significance in all ovarian cancer patients. Abbreviations: exp.: expression; OS: overall survival; HR: hazard ratio; CI: confidence interval; Table S2. The mRNA expression of some S100 family members is of no apparent prognostic significance in all serous ovarian cancer patients. Abbreviations: exp.: expression; OS: overall survival; HR: hazard ratio; CI: confidence interval; Table S3. The mRNA expression of some S100 family members is of no apparent prognostic significance in all endometrioid ovarian cancer patients. Abbreviations: exp.: expression; OS: overall survival; HR: hazard ratio; CI: confidence interval; Table S4. Prognostic value of mRNA expression of S100 family members in ovarian cancer patients with optimal or suboptimal surgery. Abbreviations: exp. -expression, HR-hazard ratio, CI-confidence intervals; Table S5. Prognostic value of mRNA expression of S100 family members in ovarian cancer patients with chemotherapy. Abbreviations: exp. -expression, HR-hazard ratio, CI-confidence intervals; Table S6. The mRNA expression levels of S100 family members in ovarian normal vs. tumor patients. Abbreviations: Min-minimal expression level, Q1-one quarter, Q3-three quarter, Max-max expression level, n-number (XLSX 29 kb)
DOI: 10.5517/cc4yvhd
title: CCDC 147854: Experimental Crystal Structure Determination

description: Related Article: H.Bock, S.Holl|2001|Z.Naturforsch.,B:Chem.Sci.|56|111|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.24403/jp.1323253
title: Zum Gehölzbestand unserer Grünanlagen / Wolfgang Heinrich, Tamara Krügel und Friedrich W. Sander
DOI: 10.24403/jp.1323263
title: Über eine spätblühende Orchis ustulata-Sippe / Horst Kümpel
DOI: 10.6084/m9.figshare.22678593
title: DESIGN OF A CONTROL SYSTEM FOR A SAFFLOWER PICKING ROBOT AND RESEARCH ON MULTISENSOR FUSION POSITIONING

description: ABSTRACT This paper discusses the design of a safflower picking robot control system and focuses on a navigation control subsystem based on multisensor fusion. A navigation subsystem, an identification and positioning subsystem, a picking subsystem, and a levelling subsystem are designed. The hardware and software of the navigation subsystem are designed in detail, and a multisensor fusion positioning method based on extended Kalman fusion technology is proposed. The accuracy and stability levels of different combined navigation methods are compared. To test the effectiveness and accuracy of the proposed method, an outdoor test is carried out. The test results show that the outdoor fusion positioning accuracy of the robot is less than 8 cm, and when the satellite signal is lost, the navigation control subsystem can still provide high positioning accuracy. The final positioning result obtained using the integrated positioning method of the wheel odometer + IMU + DGNSS is approximately 52% higher than that of the odometer, approximately 29% higher than that of the wheel odometer + IMU, and approximately 11% higher than that of the IMU + DGNSS.
DOI: 10.5066/f7ks6qg2
title: Soil properties and greenhouse gas fluxes of Prairie Pothole Region wetlands: a comprehensive data release

description: This data release encompass numerous studies examining soil properties and greenhouse gas fluxes of Prairie Pothole Region (PPR) wetland catchments. The PPR is one of the largest wetland ecosystems in the world, encompassing approximately 770,000 square kilometers of the north-central U.S. and south-central Canada, with the U.S. portion including parts of Iowa, Minnesota, South Dakota, North Dakota, and Montana. The data included in this release span a 20-year period and represent a diversity of studies ranging from localized (e.g., wetland complex, single county) to region-wide efforts. The first study was conducted in 1997 while the most recent is ongoing (circa 2017). Although study designs and methodologies differ slightly among the studies, the overarching methods are comparable and allow the data to be combined into a single data release. The data release consists of combined datasets (i.e., all studies) for soils, greenhouse gases, topography, water chemistry, weather, and covariate or explanatory variables such as water depth, soil moisture, and temperature. The data presented here represent studies that span the PPRs climate and land-use gradient, with study sites ranging from northeast Montana to northwest Iowa. Moreover, wetland catchments encompass a variety of wetland classes ranging from small, ephemerally-ponded wetlands to large, shallow lakes. A majority of the studies also present data from the entire wetland catchment, which includes the surrounding upland contributing area. In general, data were collected from numerous landscape positions along transects spanning from the wetland center to the catchment boundary. Sample frequency among the studies ranges from a single site visit per year, to season-long, biweekly sample events across multiple years. Although the databases differ in terms of data-collection dates, times, frequency (e.g., hourly versus daily), and strata (e.g., soil or water depth, soil versus atmosphere), they all include compatible variables that allow for aggregation and merging.
DOI: 10.6084/m9.figshare.21629903.v1
title: all-silicon.txt

description: Refractive index simulation of ASM.
DOI: 10.6084/m9.figshare.22678593.v1
title: DESIGN OF A CONTROL SYSTEM FOR A SAFFLOWER PICKING ROBOT AND RESEARCH ON MULTISENSOR FUSION POSITIONING

description: ABSTRACT This paper discusses the design of a safflower picking robot control system and focuses on a navigation control subsystem based on multisensor fusion. A navigation subsystem, an identification and positioning subsystem, a picking subsystem, and a levelling subsystem are designed. The hardware and software of the navigation subsystem are designed in detail, and a multisensor fusion positioning method based on extended Kalman fusion technology is proposed. The accuracy and stability levels of different combined navigation methods are compared. To test the effectiveness and accuracy of the proposed method, an outdoor test is carried out. The test results show that the outdoor fusion positioning accuracy of the robot is less than 8 cm, and when the satellite signal is lost, the navigation control subsystem can still provide high positioning accuracy. The final positioning result obtained using the integrated positioning method of the wheel odometer + IMU + DGNSS is approximately 52% higher than that of the odometer, approximately 29% higher than that of the wheel odometer + IMU, and approximately 11% higher than that of the IMU + DGNSS.
DOI: 10.6073/pasta/36bc6394ac59e09fcff390f316e96079
title: Allequash Creek Wetland Half-Hourly Soil Porewater PCO2 2021

description: Dissolved CO2, also known as PCO2, was continuously measured in parts per million in soil porewater in a riverine fen in Northern Wisconsin near the eddy covariance flux tower positioned there, named the Allequash Creek Wetland Site (US-ALQ) on AmeriFlux. The site is also a North Temperate Lakes (NTL) LTER study site. This data package contains half-hourly averages of PCO2 from March 24th to October 25th, 2021. This data package is complete but data collection may be reinstated in the future.
DOI: 10.6073/pasta/94d3a758e245148df716e3c1c5fa7fed
title: Everglades Saltwater Intrusion Marsh Surface Water Dissolved CO2 June 19th to 25th 2022

description: Dissolved CO2 (ppm) was measured in surface water at the Everglades saltwater intrusion marsh eddy covariance flux tower (US-EvM on AmeriFlux) for one week in June 2022. Minute resolution measurements were made using the CO2-LAMP (Blackstock et al., 2019).
DOI: 10.6073/pasta/70eaa7ee40dd318a216483f9499f3c49
title: Lost Creek Wetland Soil Porewater PCO2 August to September 2020

description: Half-hourly dissolved CO2, also known as CO2 partial pressure (PCO2), was continuously measured in soil porewater at Lost Creek wetland in northern Wisconsin near the flux tower (abbreviated US-Los on AmeriFlux). CO2 concentrations (ppm) are provided from August 16th to September 30th, 2020. This site was also part of the CHEESEHEAD19 intensive atmospheric science field campaign.
DOI: 10.6084/m9.figshare.20581086.v1
title: Additional file 3 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 3: Table S2. Public genome assemblies used in the pan-Zea genome construction.
DOI: 10.14469/hpc/267
title: Table 1, entry 1 : Polymerizations Using Lactone, Epoxide, and CO2

description: NMR and GPC data for PCL, Table 1, entry 1 Version 11 of the Mestrenova software is required to process these NMR files, available free of charges from http://mestrelab.com/software/mnova/download Download the .mnpub signature file and load it into MestreNova to view the spectra. To view datasets obtained here, Mestrenova need not to be licensed.
DOI: 10.6084/m9.figshare.22678628
title: ASSESSING PINEAPPLE MATURITY IN COMPLEX SCENARIOS USING AN IMPROVED RETINANET ALGORITHM

description: ABSTRACT In China, low levels of accuracy in predicting when pineapple crops will reach maturity can result from environmental variation such as light changes, fruit overlap, and shading. Therefore, this study proposed the use of an improved RetinaNet algorithm (ECA-Retinanet) based on the ECA attention mechanism. The ECA attention mechanism was embedded into the classification subnet of RetinaNet to improve accuracy in detecting different levels of maturity in pineapples. A new pineapple dataset was collected comprising four different growth stages under mild and severe complex scenarios. The experimental results have shown that the mAP (Mean Average Precision) and F1 score (Balanced Score) of the ECA-Retinanet model were 97.69%, 94.75%, 93.2%, and 90% for identification in mild and severe complex scenarios. These values are 0.42%, 2%, 1.78%, and 1.5% higher than the original RetinaNet model which exceeds those of the six existing state-of-the-art detection models. The results have indicated that the proposed algorithm could be used for accurate identification of pineapple fruit and can detect fruit maturity using ground color images in the natural environment. The study findings provide a technical reference for automatic picking robots and early yield estimation.
DOI: 10.6084/m9.figshare.2581987.v1
title: Gaussian Job Archive for C6H10O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.16912199.v2
title: Effect and mechanism of BDNF/TrkB signaling on vestibular compensation

description: Brain-derived neurotrophic factor (BDNF) regulates neuronal plasticity by targeting the tyrosine kinase B receptor (TrkB) receptor, but limited researches concentrate on the role of BDNF/TrkB signaling in vestibular compensation. In this study, rats with unilateral vestibular dysfunction were established by unilateral labyrinthectomy (UL) and infusion with siBDNF or 7, 8-Dihydroxyflavone (7,8-DHF, a TrkB receptor agonist). The behavioral scores of rats with vestibular deficits were determined and the rotarod test was performed after UL. BDNF and TrkB levels after UL were determined by western blot and quantitative reverse transcription PCR (qRT-PCR). 5-bromo-2ʹ-deoxyuridine (BrdU)-positive cells (newly generated cells) and GAD67-positive cells (GABAergic neurons) were identified by immunohistochemistry. Glial fibrillary acidic protein (GFAP) (astrocyte marker)-positive cells were identified and GABA type A receptor (GABA<sub>A</sub>R) expression was detected by immunofluorescence. We found that after UL, BDNF and TrkB levels were up-regulated with a maximum value at 4 h, and then progressively down-regulated during 4 h ~ 7 d. Blocking BDNF/TrkB signaling inhibited the recovery from vestibular deficits, decreased the numbers of newly generated cells and astrocytes in medial vestibular nucleus (MVN), inferior vestibular nerve (IVN), superior vestibular nerve (SVN) and lateral vestibular nucleus (LVN), and disrupted the balances of GABAergic neurons and GABA<sub>A</sub>R expressions in the left (lesioned) side and right (intact) side of MVN, whereas activation of BDNF/TrkB signaling caused opposite results. The current study indicated that BDNF/TrkB signaling avails vestibular compensation, depending on the number of newly generated cells and astrocytes, the rebalance of GABAergic neurons, and GABA<sub>A</sub>R expression in bilateral MVN.
DOI: 10.6084/m9.figshare.21629921.v1
title: QSM.txt

description: Refractive index simulation of QSM.
DOI: 10.6084/m9.figshare.13242245
title: Metadata record for the manuscript: Synergistic activation of mutant TERT promoter by Sp1 and GABPA in BRAFV600E-driven human cancers

description: <b>Summary</b>

This
metadata record provides details of the data supporting the claims of the
related manuscript: “Synergistic activation of mutant TERT
promoter by Sp1 and GABPA in BRAFV600E-driven human cancers”.

The
data consist of 31 Excel .xlsx format spreadsheets and a Word .docx document.

The
related study tested the hypothesis that activated extracellular
signal-regulated kinase (ERK) may be recruited to mutant telomerase reverse
transcriptase (TERT) promoter by pioneer transcription factors.

 

<b>Data
access</b>

The
31 Excel .xlsx spreadsheets underlie the figures in the related manuscript, and
are named according to the figure and subfigure they underlie (e.g., Figure 1B
1.xlsx). These are openly available and are included together with this metadata record, and they contain data concerning qRT-PCR, dual-luciferase reporter assay, ChIP and TRAP assays described in the related manuscript. The sequence homology analsysis (underlying
Supplementary Figure 8) is openly available and is also included together with this
metadata record. Data for the Co-IP assay supporting Figure 3 are in the file WB-CoIPs.tiff and are available upon request to the corresponding author, Prof. Peng Hou: phou@xjtu.edu.cn.
DOI: 10.6084/m9.figshare.14815167
title: Identification of significant genes and therapeutic agents for breast cancer by integrated genomics

description: Breast cancer is the most commonly diagnosed malignancy in women; thus, more cancer prevention research is urgently needed. The aim of this study was to predict potential therapeutic agents for breast cancer and determine their molecular mechanisms using integrated bioinformatics. Summary data from a large genome-wide association study of breast cancer was derived from the UK Biobank. The gene expression profile of breast cancer was from the Oncomine database. We performed a network-wide association study and gene set enrichment analysis to identify the significant genes in breast cancer. Then, we performed Gene Ontology analysis using the STRING database and conducted Kyoto Encyclopedia of Genes and Genomes pathway analysis using Cytoscape software. We verified our results using the Gene Expression Profile Interactive Analysis, PROgeneV2, and Human Protein Atlas databases. Connectivity map analysis was used to identify small-molecule compounds that are potential therapeutic agents for breast cancer. We identified 10 significant genes in breast cancer based on the gene expression profile and genome-wide association study. A total of 65 small-molecule compounds were found to be potential therapeutic agents for breast cancer.
DOI: 10.6084/m9.figshare.20057402.v1
title: Additional file 1 of Development and validation of a novel mitophagy-related gene prognostic signature for glioblastoma multiforme

description: Additional file 1.
DOI: 10.6084/m9.figshare.22678628.v1
title: ASSESSING PINEAPPLE MATURITY IN COMPLEX SCENARIOS USING AN IMPROVED RETINANET ALGORITHM

description: ABSTRACT In China, low levels of accuracy in predicting when pineapple crops will reach maturity can result from environmental variation such as light changes, fruit overlap, and shading. Therefore, this study proposed the use of an improved RetinaNet algorithm (ECA-Retinanet) based on the ECA attention mechanism. The ECA attention mechanism was embedded into the classification subnet of RetinaNet to improve accuracy in detecting different levels of maturity in pineapples. A new pineapple dataset was collected comprising four different growth stages under mild and severe complex scenarios. The experimental results have shown that the mAP (Mean Average Precision) and F1 score (Balanced Score) of the ECA-Retinanet model were 97.69%, 94.75%, 93.2%, and 90% for identification in mild and severe complex scenarios. These values are 0.42%, 2%, 1.78%, and 1.5% higher than the original RetinaNet model which exceeds those of the six existing state-of-the-art detection models. The results have indicated that the proposed algorithm could be used for accurate identification of pineapple fruit and can detect fruit maturity using ground color images in the natural environment. The study findings provide a technical reference for automatic picking robots and early yield estimation.
DOI: 10.6084/m9.figshare.14290741
title: Studies on the formation and synthetic mechanism of related substance G in potassium clavulanate production

description: The objective of this study was to investigate the formation and synthetic mechanism of related substance G in potassium clavulanate production. The impurity in the potassium clavulanate final product, with a retention time of 13.5 min, was confirmed as related substance G by high performance liquid chromatography-mass spectrometry/mass spectrometry. Related substance G analysis during the production of clavulanic acid showed that this impurity could be synthesized during fermentation, and the amount increased with the fermentation time. Studies on its synthetic mechanism showed that L-tyrosine and succinic acid were the precursors for biosynthesis of related substance G in vivo. The reaction was deduced to be catalyzed by an enzyme. The enzyme was a type of extracellular enzyme present in the fermentation supernatant.
DOI: 10.6084/m9.figshare.14290790
title: Design and preparation of a novel colon-targeted tablet of hydrocortisone

description: ABSTRACT The objective of this research was to design a new colon-targeted drug delivery system based on chitosan. The properties of the films were studied to obtain useful information about the possible applications of composite films. The composite films were used in a bilayer system to investigate their feasibility as coating materials. Tensile strength, swelling degree, solubility, biodegradation degree, Fourier transform infrared spectroscopy (FTIR), Differential Scanning Calorimetry (DSC), Scanning electron microscope (SEM) investigations showed that the composite film was formed when chitosan and gelatin were jointly reacted jointly. The results showed that a 6:4 blend ratio was the optimal chitosan/gelatin blend ratio. In vitro drug release results indicated that the Eudragit- and chitosan/gelatin-bilayer coating system prevented drug release in simulated intestinal fluid (SIF) and simulated gastric fluid (SGF). However, the drug release from a bilayer-coated tablet in SCF increased over time, and the drug was almost completely released after 24 h. Overall, colon-targeted drug delivery was achieved by using a chitosan/gelatin complex film and a multilayer coating system.
DOI: 10.6084/m9.figshare.21106625
title: A bio-inspired 3D metamaterials with chirality and anti-chirality topology fabricated by 4D printing

description: Artificial architected metamaterials equipped with unique mechanical and physical properties that are naturally inaccessible can be obtained by rational design. In this work, the innovative three-dimensional (3D) chiral and anti-chiral metamaterials are developed referring to the face-rotating polyhedral (FRP) structure present in the virus. Through assembling planar triangular units into the regular octahedron cells, several typical forms of chiral and anti-chiral metamaterials can be obtained by different assembly methods. By changing the topology parameters, the Poisson’s ratio can be adjusted between [0, 2.8]. The metamaterials are fabricated by 3D printing utilizing shape memory polymer, and the mechanical properties are analyzed via Finite Element Analysis (FEA) and experiments, including Young’s modulus, Poisson’s ratio, and tension-twist coupling behavior. In addition, target metamaterial with specific local deformation behavior is obtained by programmatic calculations and distributions to meet special requirements or achieve unique applications. The shape memory property endows the mechanical metamaterials with more potential applications.
DOI: 10.6084/m9.figshare.14290790.v1
title: Design and preparation of a novel colon-targeted tablet of hydrocortisone

description: ABSTRACT The objective of this research was to design a new colon-targeted drug delivery system based on chitosan. The properties of the films were studied to obtain useful information about the possible applications of composite films. The composite films were used in a bilayer system to investigate their feasibility as coating materials. Tensile strength, swelling degree, solubility, biodegradation degree, Fourier transform infrared spectroscopy (FTIR), Differential Scanning Calorimetry (DSC), Scanning electron microscope (SEM) investigations showed that the composite film was formed when chitosan and gelatin were jointly reacted jointly. The results showed that a 6:4 blend ratio was the optimal chitosan/gelatin blend ratio. In vitro drug release results indicated that the Eudragit- and chitosan/gelatin-bilayer coating system prevented drug release in simulated intestinal fluid (SIF) and simulated gastric fluid (SGF). However, the drug release from a bilayer-coated tablet in SCF increased over time, and the drug was almost completely released after 24 h. Overall, colon-targeted drug delivery was achieved by using a chitosan/gelatin complex film and a multilayer coating system.
DOI: 10.6084/m9.figshare.22678337
title: Additional file 1 of Comprehensive analysis of circular RNAs in porcine small intestine epithelial cells associated with susceptibility to Escherichia coli F4ac diarrhea

description: Additional file 1: Table S1. Summary of circRNAs identified in eight samples. Table S2. The counts of the back-spliced junction read of 8 samples were normalized as the spliced reads per billion mapping (SRPBM). Table S3. Differentially expressed circRNAs (DEC) between adhesive and non-adhesive group. Table S4. Significantly enriched GO terms of DE circRNA host genes between adhesive and non-adhesive group. Table S5. Predicted DE circRNA's miRNA binding sites. Table S6. Significantly enriched GO terms and KEGG pathways of DE genes between adhesive and non-adhesive group.