cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/318
title: Simplicity in complexity – towards a soft matter physics of caramel

description: Caramel is a mixture of sugars, milk proteins, fat and water cooked at high temperatures to initiate Maillard reactions. We study caramels as ‘active emulsion-filled protein gels’, in which fat droplets are chemically-bonded to a background gel matrix of cross-linked proteins in a concentrated aqueous sugar solution. We delimit a ‘caramel region’ in composition space. Oscillatory rheology within this region reveals that we can superpose the mechanical spectra of our caramels into a single pair of G'(w);G''(w) master curves using time-composition superposition (tCS) over 12 decades of frequency, so that these caramels are instances of an underlying ‘universal material’. This insight constrains the molecular mechanisms for structure formation, and implies that measuring a couple of parameters suffices to predict the rheology of caramels over 12 orders of magnitude in frequency.
DOI: 10.7488/ds/1806
title: CORONA Satellite Image of Area Extending from Arime to Qanntara (Jazira), Syria

description: This CORONA panchromatic satellite image covers an area extending from Arime to Qanntara (Jazira), Syria; it includes the town of Manbij. A segment of the River Euphrates is also in the image, and with this image predating the construction of the Euphrates Dam at Tabqa, Syria and the Ataturk Dam to the north in Turkey, this makes the image especially important for identifying archaeological sites situated along the River Euphrates which would have become inundated with the formation of Lake Assad. The ground resolution is approximately 2 metres. This zipped image dataset also includes a screenshot showing a section of the image's footprint, which corresponds to the full extent of the captured images. There are four image segments associated with the full USGS provided footprint (DS1107-2138DA067_67_a.tif, DS1107-2138DA067_67_b.tif, DS1107-2138DA067_67_c.tif and DS1107-2138DA067_67_d.tif). This image corresponds to DS1107-2138DA067_67_a.tif There is no cloud cover associated with these images. Please note that the spatial accuracy is not reliable and may need to be geo-referenced again, though this was done to situate the image over the corresponding ground area. The RMS for this 0.01241. Users of this image will be able to identify areas using built environments and features of the physical landscape. This image was cropped to remove scanned negative border, and then geo-referenced in ArcGIS 9.3 using GoogleEarth to find physical features such as river conjunctions and road junctions. This CORONA satellite image was made available from the U.S. Geological Survey. Aerial or Satellite Imagery. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2011-02-04 and migrated to Edinburgh DataShare on 2017-02-21.
description: GeoTIFF
DOI: 10.7488/ds/1433
title: Listening test materials for "Waveform generation based on signal reshaping for statistical parametric speech synthesis"

description: The dataset contains the testing stimuli and listeners' MUSHRA test responses for the Interspeech 2016 paper "Waveform generation based on signal reshaping for statistical parametric speech synthesis". On this paper, we propose a new paradigm of waveform generation for Statistical Parametric Speech Synthesis that is based on neither source-filter separation nor sinusoidal modelling. We suggest that one of the main problems of current vocoding techniques is that they perform an extreme decomposition of the speech signal into source and filter, which is an underlying cause of "buzziness", "musical artifacts", or "muffled sound" in the synthetic speech. The proposed method avoids making unnecessary assumptions and decompositions as far as possible, and uses only the spectral envelope and F0 as parameters. Pre-recorded speech is used as a base signal, which is "reshaped" to match the acoustic specification predicted by the statistical model, without any source-filter decomposition. A detailed description of the method is presented, including implementation details and adjustments. Subjective listening test evaluations of complete DNN-based text-to-speech systems were conducted for two voices: one female and one male. The results show that the proposed method tends to outperform the state-of-the-art standard vocoder STRAIGHT, whilst using fewer acoustic parameters.
DOI: 10.7488/ds/1317
title: Listening test materials for "Robust TTS duration modelling using DNNs"

description: This data release contains listening test materials associated with the paper "Robust TTS duration modelling using DNNs", presented at ICASSP 2016 in Shanghai, China.
description: See readme.txt
DOI: 10.7488/ds/1434
title: Tone-melody correspondence in Vietnamese popular song: supplementary materials

description: This dataset contains supplementary materials to the paper "Tone-melody correspondence in Vietnamese popular song", published in the proceedings of the 5th International Symposium on Tonal Aspects of Languages [TAL-2016]. It contains CSV data collected from a corpus of 20 Vietnamese songs, as well as R code to replicate the analysis reported in the paper.
description: The csv.zip file contains one CSV file for each song in the corpus. Each file includes information on note values and durations, the locations of manually transcribed musical/linguistic phrase boundaries, Vietnamese lyrics transcribed in the International Phonetic Alphabet, and a symbolic representation of each word's lexical tone. The tal2016.R file contains R code to perform the analyses and reproduce the findings described in the conference paper.
DOI: 10.7488/ds/319
title: Incipient tonogenesis in Phnom Penh Khmer: supplementary materials

description: This dataset contains supplementary materials to the paper "Incipient tonogenesis in Phnom Penh Khmer: acoustic and perceptual studies". It includes KlattGrid files used to generate perceptual data, anonymised perception and production data (as CSV files), and R code for the analysis of the perception and production studies described in the paper. The audio recordings and associated Praat TextGrids are also available as a separate DataShare entry.
DOI: 10.7488/ds/1711
title: Virus genomes reveal factors that spread and sustained the Ebola epidemic

description: Molecular epidemiological analysis output files and trees used in: Dudas et al (2017) Nature. # Abstract: # The 2013–2016 epidemic of Ebola virus disease was of unprecedented magnitude, duration and impact. Analysing 1610 Ebola virus genomes, representing over 5% of known cases, we reconstruct the dispersal, proliferation and decline of Ebola virus throughout the region. We test the association of geography, climate and demography with viral movement among administrative regions, inferring a classic ‘gravity’ model, with intense dispersal between larger and closer populations. Despite attenuation of international dispersal after border closures, cross-border transmission had already set the seeds for an international epidemic, rendering these measures ineffective in curbing the epidemic. We address why the epidemic did not spread into neighbouring countries, showing they were susceptible to significant outbreaks but at lower risk of introductions. Finally, we reveal this large epidemic to be a heterogeneous and spatially dissociated collection of transmission clusters of varying size, duration and connectivity. These insights will help inform interventions in future epidemics. # Files: # * "Makona_1610_joint_phylogeny_spatial_run1.tgz" - BEAST output files for joint discrete spatial GLM and phylogenetic reconstruction of 1610 EBOV genomes from Guinea, Sierra Leone and Liberia sampled over 2014-2015. Chain length 200M stets. Trees and log files plus MCC tree summary. * "Makona_1610_joint_phylogeny_spatial_run2.tgz" - Second independent run of 200M steps. * "Makona_1610_metadata_2016-06-23.csv" - metadata file for above genomes comprising sampling locations, sampling dates, responsible labs, accession numbers and references. * "Location_Data_2016-05-27.csv" - data about each location used in the analysis including demographic, geographic, language and climatic variables. * "Computed_Data_2016-08-26.csv" - outputs and estimates from the BEAST analysis used in summary analyses and figures.
DOI: 10.7488/ds/1363
title: Mechanical properties of pristine and nanoporous graphene

description: This data folder contains the molecular dynamics (MD) case directories and data generated from graphene simulations.
DOI: 10.7488/ds/290
title: Escherichia coli as a model active colloid: A practical introduction

description: The ﬂagellated bacterium Escherichia coli is increasingly used experimentally as a self-propelled swimmer. To obtain meaningful, quantitative results that are comparable between different laboratories, reproducible protocols are needed to control, ‘tune’ and monitor the swimming behaviour of these motile cells. We critically review the knowledge needed to do so, explain methods for characterising the colloidal and motile properties of E. coli cells, and propose a protocol for keeping them swimming at constant speed at ﬁnite bulk concentrations. In the process of establishing this protocol, we use motility as a high-throughput probe of aspects of cellular physiology via the coupling between swimming speed and the proton motive force. This dataset contains the raw data to go with the published manuscript, including the movie to go with figure 1. N.B. the TIF file itself contains most of the relevant metadata, e.g. pixel calibration and frame rate etc.
description: See Readme.txt
DOI: 10.6084/m9.figshare.20137541
title: primary mouse RT single cell RNA-seq

description: <br> Seurat object stored in RDS file format.Three fresh primary mouse RT tumor samples were prepared and loaded in 10x Chromium instrument (10x Genomics). Libraries were prepared using a Single Cell 3’ Reagent Kit (V2 chemistry, 10X Genomics) and sequenced on an Illumina HiSeq2500 using paired-end 26x98 bp as sequencing mode, targeting at least 50 000 reads par cell. Mapping and UMI counting per gene were performed using cellranger tool (version 3.1.0) and the hg19 reference genome version.Cells with both a low number of genes and a high proportion of mitochondrial RNA were discarded. The threshold of the minimum number of detected genes was set as the 5th percentile of the distribution of the number of detected genes in all cells while the maximum proportion of mitochondrial genes were set by visual inspection of the plot of the number of detected genes versus the percentage of mitochondrial gene of each sample.scRNA-seq data integration was performed using the CCA-based implemented in Seurat version 3. The clustering was conducted using the graph-based modularity optimization Louvain algorithm implemented in Seurat v3. The resolution 0.4 (integrated_snn_res.0.4) was choosen for the final result.<br>
DOI: 10.6084/m9.figshare.20137541.v1
title: primary mouse RT single cell RNA-seq

description: <br> Seurat object stored in RDS file format.Three fresh primary mouse RT tumor samples were prepared and loaded in 10x Chromium instrument (10x Genomics). Libraries were prepared using a Single Cell 3’ Reagent Kit (V2 chemistry, 10X Genomics) and sequenced on an Illumina HiSeq2500 using paired-end 26x98 bp as sequencing mode, targeting at least 50 000 reads par cell. Mapping and UMI counting per gene were performed using cellranger tool (version 3.1.0) and the hg19 reference genome version.Cells with both a low number of genes and a high proportion of mitochondrial RNA were discarded. The threshold of the minimum number of detected genes was set as the 5th percentile of the distribution of the number of detected genes in all cells while the maximum proportion of mitochondrial genes were set by visual inspection of the plot of the number of detected genes versus the percentage of mitochondrial gene of each sample.scRNA-seq data integration was performed using the CCA-based implemented in Seurat version 3. The clustering was conducted using the graph-based modularity optimization Louvain algorithm implemented in Seurat v3. The resolution 0.4 (integrated_snn_res.0.4) was choosen for the final result.<br>
DOI: 10.7488/ds/1355
title: A Phenomenological Description of BslA Assemblies Across Multiple Length Scales

description: Intrinsically interfacially active proteins have garnered considerable interest recently due to their potential use in a range of materials applications. Notably, the fungal hydrophobins are known to form robust and well organized surface layers with high mechanical strength. Recently it was shown that the bacterial biofilm protein BslA also forms highly elastic surface layers at interfaces. Here we describe several self-assembled structures formed by BslA, both at interfaces and in bulk solution, over a range of length scales spanning from nanometers to millimeters. First, we observe transiently stable and highly elongated air bubbles formed in agitated BslA samples. We study their behavior in a range of solution conditions and hypothesize that their dissipation is a consequence of the slow adsorption kinetics of BslA to an air/water interface. Second, we describe elongated tubules formed by BslA interfacial films when shear stresses are applied in both a Langmuir trough and rheometer. These structures bear a striking resemblance, although much larger in scale, to the elongated air bubbles formed during agitation. Taken together, this knowledge will better inform the conditions and applications of how BslA can be utilized in the stabilization of multiphase materials.
DOI: 10.7488/ds/91
title: Scottish Election Results 1997 - 2009

description: The dataset contains all national, European and by-election results for Holyrood and Westminster elections in Scotland since 1997. The results from each election are available in both CSV or XML format. For national Holyrood elections the data includes both the constituency and list counts. For national results, in addition to votes cast for each candidate or party, the XML format contains, where available, the name of each party leader. The results were compiled from the following sources: * The British Broadcasting Corporation - http://bbc.co.uk * Scottish Politics - the almanac of Scottish elections and politics - http://www.alba.org.uk/ * David Boothroyd's United Kingdom Election Results site - http://www.election.demon.co.uk/ (this continues the definitive work of Professor F. W. S. Craig, who compiled and analysed all British parliamentary election results from 1832 - 1979).
DOI: 10.7488/ds/1316
title: Listening test materials for "From HMMs to DNNs: Where do the improvements come from?"

description: This data release contains listening test materials associated with the paper "From HMMs to DNNs: Where do the improvements come from?", presented at ICASSP 2016 in Shanghai, China.
description: See readme.txt
DOI: 10.7488/ds/2959
title: SUPERSEDED - Synthetic data and code for "Bayesian geophysical inversion using invertible neural networks"

description: ## This item has been replaced by the one which can be found at https://datashare.ed.ac.uk/handle/10283/3886 ## This dataset contains the synthetic data and codes used to generate those data for manuscript "Bayesian geophysical inversion using invertible neural networks". Xin Zhang's ORCID is: https://orcid.org/0000-0003-0344-1453
description: This dataset contains synthetic data used to training invertible neural networks for 1D surface wave dispersion and 2D travel time tomography. The codes used to generate those data are also included. Details can be found in readme.txt.
DOI: 10.7488/ds/1504
title: The Voice Conversion Challenge, 2016: multidimensional scaling (MDS) listening test results

description: The Voice Conversion Challenge (VCC) 2016, one of the special sessions at Interspeech 2016, deals with speaker identity conversion, referred as Voice Conversion (VC). The task of the challenge was speaker conversion, i.e., to transform the voice identity of a source speaker into that of a target speaker while preserving the linguistic content. Using a common dataset consisting of 162 utterances for training and 54 utterances for evaluation from each of 5 source and 5 target speakers, 17 groups working in VC around the world developed their own VC systems for every combination of the source and target speakers, i.e., 25 systems in total, and generated voice samples converted by the developed systems. The objective of the VCC was to compare various VC techniques on identical training and evaluation speech data. The samples were evaluated in terms of target speaker similarity and naturalness by 200 listeners in a controlled environment. This section of the VCC repository contains the listening test results for four of the source-target pairs (two intra-gender and two cross-gender) in more detail. Multidimensional scaling was performed to illustrate where each system was perceived to be in an acoustic space compared to the source and target speakers and to each other. See also item "The Voice Conversion Challenge 2016" (DOI: 10.7488/ds/1430)
DOI: 10.7488/ds/1519
title: High-pressure phase of brucite stable at Earth’s mantle transition zone and lower mantle conditions

description: We investigate the high-pressure phase diagram of the hydrous mineral brucite, Mg(OH)2, using structure search algorithms and ab initio simulations. We predict a new high-pressure phase stable at pressure and temperature conditions found in cold subducting slabs in Earth’s mantle transition zone and lower mantle. This implies that brucite can play a much more important role in water transport and storage in Earth’s interior than hitherto thought. The predicted high-pressure phase, stable in calculations between 20-35 GPa and up to 800 K, features MgO6 octahedral units arranged in the anatase-TiO2 structure. This suggests that brucite will transform from a layered to a compact three-dimensional network structure before eventual decomposition into periclase and ice. We show that the new phase has unique spectroscopic fingerprints that should allow for straightforward detection in experiments. The new phase also has distinct elastic properties that might make its direct detection in the deep Earth with geophysical methods possible.
description: See readme file.
DOI: 10.7488/ds/1498
title: Effects of obstruent voicing on vowel F0: supplementary materials

description: This dataset contains supplementary materials to the paper "Effects of obstruent voicing on vowel F0: Evidence from 'true voicing' languages", published in the Journal of the Acoustical Society of America (https://doi.org/10.1121/1.4962445). It contains audio examples, additional plots and figures, predicted marginal means, and R code to reproduce the figures and analyses in the published paper.
description: The *.wav files are audio examples corresponding to Figures 2-5 in the published paper. The *.ps files are additional plots and figures (spectrographic examples, individual subject variation, and VOT-F0 covariance). The Tables_and_captions.pdf file includes the tables of predicted marginal means as well as captions for each of the *.ps files. The KLFigsStats.R file contains R code which, in conjunction with the *.txt CSV files providing temporal and spectral measurements, will replicate the analyses described in the paper. The cld.Rmd file is an R Markdown document which, in conjunction with the CSV files, will create Tables S1 and S2 (in Tables_and_captions.pdf).
DOI: 10.7488/ds/1449
title: Native MS Analysis of Encapsulated Ferritin from Rhodospirillum rubrum

description: This dataset contains native MS analysis of the Encapsulated Ferritin (EncFtn, Rru_A0973) from Rhodospirillum rubrum. Included are ion-mobility mass spectra of apo- and Fe-bound EncFtn, mass spectral data showing the gas phase disassembly of Fe-bound EncFtn; and native mass spectra of point mutants of EncFtn. N.B. Datasets archived as .raw files (Waters data file extension; can be viewed using MassLynx).
description: Datasets archived as .raw files (Waters data file extension; can be viewed using MassLynx). 1. Native Ion-mobility Mass Spectrometry datasets for Fe-bound and apo-EncFtnsH - EncFtn_Fe_IMMS.raw - Enc_Ftn_apo_IMMS.raw 2. Gas Phase Dissociated of Fe-bound EncFtn decameric complex, which results in both monomer and dimer subcomplexes. - EncFtn_Fe_GasPhaseDissociation.raw 3. Native MS analysis of EncFtn single point mutants (E32A, E62A, H65A). - EncFtn_E32A.raw - EncFtn_E62A.raw - EncFtn_H65A.raw
DOI: 10.7488/ds/370
title: Computational phase diagrams of noble gas hydrates under pressure

description: We present results from a first-principles study on the stability of noble gas-water compounds in the pressure range 0-100 kbar. Filled-ice structures based on the host water networks ice-Ih, ice-Ic, ice-II, and C0 interacting with guest species He, Ne, and Ar are investigated, using density functional theory (DFT) with four different exchange-correlation functionals that include dispersion effects to various degrees: the non-local density-based optPBE-van derWaals (vdW) and rPW86-vdW2 functionals, the semi-empirical D2 atom pair correction, and the semi-local PBE functional. In the He-water system, the sequence of stable phases closely matches that seen in the hydrogen hydrates, a guest species of comparable size. In the Ne-water system, we predict a novel hydrate structure based on the C0 water network to be stable or at least competitive at relatively low pressure. In the Ar-water system, as expected, no filled-ice phases are stable; however, a partially occupied Ar-C0 hydrate structure is metastable with respect to the constituents. The ability of the different DFT functionals to describe the weak host-guest interactions is analysed and compared to coupled cluster results on gas phase systems.
DOI: 10.7488/ds/1757
title: Wales Land-Form PANORAMA® DTM

description: Land-Form PANORAMA® DTM from Ordnance Survey Open Data, mosaiced and clipped to a country boundary (derived from OS Open Boundary data) using ArcGIS. 1:50,000 scale DTM. Digital Terrain Model. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2010-07-27 and migrated to Edinburgh DataShare on 2017-02-21.
description: ArcInfo GRID
DOI: 10.7488/ds/1952
title: Roam Exercises Set 1

description: Zip file with 5 Roam exercises in PDF and PPTX formats, plus trainer guide and Quick Guide. GIS vector data. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2014-04-10 and migrated to Edinburgh DataShare on 2017-02-22.
description: ESRI Shapefile
DOI: 10.7488/ds/261
title: Non-photochemical laser-induced crystal nucleation by evanescent wave

description: Dataset contains tabulated data (in Excel and PDF formats) on power-dependence of laser-induced nucleation by evanescent wave.
description: See README.pdf for list of data files.
DOI: 10.7488/ds/1784
title: GB Mid Year Population Estimates 1981 - 2009

description: GB mid year population estimates by Local Authority from 1981 - 2009. Mid year estimates reflect the population at 30 June of the reference year. Population data was downloaded from Nomis (www.nomisweb.co.uk/) and joined to Local Authority (district, unitary authority and borough) boundaries downloaded from Ordnance Survey OpenData Boundary Line dataset and joined using ArcGIS. Contains public sector information licensed under the Open Government Licence v1.0. GIS vector data. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2010-11-11 and migrated to Edinburgh DataShare on 2017-02-21.
description: ESRI Shapefile
DOI: 10.7488/ds/1953
title: Roam Exercise Set 2

description: Zip file with 5 Roam exercises in PDF and PPTX formats, plus trainer guide and Quick Guide. GIS vector data. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2014-04-10 and migrated to Edinburgh DataShare on 2017-02-22.
description: ESRI Shapefile