cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.vf865
title: Data from: Heterogeneity in individual quality and reproductive trade-offs within species

description: Interspecifically, a reasonable body of evidence supports a trade-off
 between offspring size and number. However, at the intraspecific level, a
 whole manner of phenotypic correlations between offspring size and number
 are observed. These correlations may be predicted when heterogeneity in
 resource availability, or quality, is considered. Making the assumption
 that maternal size is a proxy for resource availability, we
 meta-analytically quantified four phenotypic reproductive correlations
 within numerous species: (1) maternal size and offspring size, (2)
 maternal size and offspring number, (3) offspring number and offspring
 size, and (4) offspring number and offspring size after controlling for
 maternal size. Within species, maternal size showed a positive correlation
 with both offspring size and number. Despite this consistency, no
 correlation between offspring size and number was found. After controlling
 for maternal size, however, offspring size and number showed a significant
 negative correlation. A phylogenetic component of our analysis accounted
 for little heterogeneity in the data, suggesting that our findings show
 remarkable consistency across taxa. Overall, our results support an
 observable phenotypic trade-off between offspring size and number.
 However, this analysis also highlights the importance of considering
 quality when examining trade-offs, a task that is not always
 straightforward as quality is context dependant.
description: M-O.NumberContains meta-analytic effect sizes for a correlation between maternal size and offspring number within multiple species. A reference to the original citation from which each correlation originates is given. The full citation can be found by cross referencing the authors name and date of publication with supplementary data bibliography of the full publication.M-O.Size.DataContains meta-analytic effect sizes for a correlation between maternal size and offspring size within multiple species. A reference to the original citation from which each correlation originates is given. The full citation can be found by cross referencing the authors name and date of publication with supplementary data bibliography of the full publication.O-O.Undajusted.DataContains meta-analytic effect sizes for a correlation between offspring size and offspring number within multiple species. A reference to the original citation from which each correlation originates is given. The full citation can be found by cross referencing the authors name and date of publication with supplementary data bibliography of the full publication.O-O.AdjustedContains meta-analytic effect sizes for a correlation between offspring size and offspring number, after correction for maternal size, within multiple species. A reference to the original citation from which each correlation originates is given. The full citation can be found by cross referencing the authors name and date of publication with supplementary data bibliography of the full publication.
DOI: 10.5061/dryad.55nh5
title: Data from: Manipulation of habitat isolation and area implicates deterministic factors and limited neutrality in community assembly

description: Theory predicts deterministic and stochastic factors will contribute to
 community assembly in different ways: environmental filters should
 regulate those species that establish in a particular area resulting in
 the ecological requirements of species being the primary driver of species
 distributions, while chance and dispersal limitation should dictate the
 likelihood of species reaching certain areas with the ecology of species
 being largely neutral. These factors are specifically relevant for
 understanding how the area and isolation of different habitats or islands
 interact to affect community composition. Our review of the literature
 found few experimental studies have examined the interactive effect of
 habitat area and isolation on community assembly, and the results of those
 experiments have been mixed. We manipulated the area and isolation of rock
 ‘islands’ created de novo in a grassland matrix to experimentally test how
 deterministic and stochastic factors shape colonizing animal communities.
 Over 64 weeks, the experiment revealed the primacy of deterministic
 factors in community assembly, with habitat islands of the same size
 exhibiting remarkable consistency in community composition and diversity,
 irrespective of isolation. Nevertheless, tangible differences still
 existed in abundance inequality among taxa: large, near islands had
 consistently higher numbers of common taxa compared to all other island
 types. Dispersal limitation is often assumed to be negligible at small
 spatial scales, but our data shows this not to be the case. Furthermore,
 the dispersal limitation of a subset of species has potentially complex
 flow-on effects for dictating the type of deterministic factors affecting
 other colonising species.
description: Ord_TJ-ECE-2017-04-00414R1_weeks5-28See read me fileOrd_TJ-ECE-2017-04-00414R1_week64See read me file
DOI: 10.5281/zenodo.18382654
title: TABLE 5 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 5. Length ratios of urosternites and urocoxites of Coryphophthalmus serbicus sp. nov.
Abdominal segmentUrosternite:urocoxitesUrostyli (not including apical spines):urocoxitesApical spines:stylimalefemalemalefemalemalefemaleII0.620.580.630.460.500.50III0.640.600.600.490.510.51IV–VI0.53–0.560.58–0.590.54–0.560.48–0.490.50–0.510.51–0.53VII0.450.540.600.500.510.53VIII0.32–0.770.750.420.42IX––1.130.790.270.30
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 381 in Zootaxa 4661 (2) on page 381, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5281/zenodo.18382655
title: TABLE 5 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 5. Length ratios of urosternites and urocoxites of Coryphophthalmus serbicus sp. nov.
Abdominal segmentUrosternite:urocoxitesUrostyli (not including apical spines):urocoxitesApical spines:stylimalefemalemalefemalemalefemaleII0.620.580.630.460.500.50III0.640.600.600.490.510.51IV–VI0.53–0.560.58–0.590.54–0.560.48–0.490.50–0.510.51–0.53VII0.450.540.600.500.510.53VIII0.32–0.770.750.420.42IX––1.130.790.270.30
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 381 in Zootaxa 4661 (2) on page 381, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5061/dryad.7np78gp
title: Data from: Little to fear: largest lizard predator induces weak defense responses in ungulate prey

description: Non-consumptive effects can strongly influence apex predator ecological
 function. These effects arise because prey produce often induce costly
 phenotypic responses to mitigate predation risk. Yet because predator-prey
 interactions are complex, prey defences may vary considerably. We
 investigated if the Komodo dragon (Varanus komodoensis), an reptile apex
 predator, induced multi-scale anti-predator responses in key prey, the
 Rusa deer (Cervus timorensis) and the wild pig (Sus scrofa). To this end,
 we examined the temporal and spatial partitioning of habitats by predator
 and prey, determined the size of ungulate groups as a function of risk,
 and assessed changes in individual behavior of prey individuals exposed to
 predator kairomones at feeding stations. Komodo dragon, deer and pig
 populations exhibited significant, but subtle differences in three habitat
 preferences, that otherwise indicated high niche overlap. Komodo dragon
 predation risk, alongside other commonly considered predictor variables
 did not affect deer or pig group size. With the exception of one
 individual-based vigilance type behavior in pigs, no other anti-predator
 behavior, including reduced food consumption, significantly varied in the
 presence of predator odour cue at feeding stations. Overall our results
 indicated limited evidence for anti-predator behavior and suggest Komodo
 dragons exert weak non-consumptive effects of predation in ungulates.
 However, weak predatory interactions could be beneficial in island
 ecosystems as it could promote predator-prey co-existence that reduces
 extinction risk.
description: All data used in
 BEHECO-2018-0305All data used for
 results presented with metadata and three data sheets.
DOI: 10.5061/dryad.09760
title: Data from: Social and extra-pair mating in relation to MHC variation in common yellowthroats

description: Females are thought to gain better quality genes for their offspring by
 mating with particular males. Genes of the major histocompatibility
 complex (MHC) play a critical role in adaptive immunity, and many studies
 have examined female mate choice in relation to MHC variation. In common
 yellowthroats, females prefer males that have larger facial masks, an
 ornament associated with MHC variation, immune function and condition.
 Here we also tested whether mating patterns are directly correlated with
 MHC diversity or similarity. Using pyrosequencing, we found that the
 presence of extra-pair young in the brood was not related to male MHC
 diversity or similarity between the female and her within-pair mate.
 Furthermore, extra-pair sires did not differ from males they cuckolded.
 MHC diversity is extremely high in this species, and it may limit the
 ability of females to assess MHC variation in males. Thus, mating may be
 based on ornaments, such as mask size, which are better indicators of
 overall male health and genetic quality.
description: Yellowthroat_MHC_dataData on major histocompatibility complex (MHC) gene variation in pairs of common yellowthroats. Data from Saukville, Wisconsin. See Readme file.
DOI: 10.5061/dryad.123jm
title: Data from: Hemiparasites can transmit indirect effects from their host plants to herbivores

description: Parasitic plants can serve as critical intermediaries between their hosts
 and other organisms; however these relationships are not well understood.
 To investigate the relative importance of plant traits in such
 interactions, we studied the role of the root hemiparasite, Castilleja
 levisecta (Orobanchaceae), as a mediator of interactions between the host
 plants it parasitizes and the lepidopteran herbivore Euphydryas editha
 (Nymphalidae), whose caterpillars feed on Castilleja and sequester iridoid
 glycosides from it. We tested whether the hemiparasite’s size, leaf N
 concentration, and iridoid glycoside concentrations were influenced by the
 identity of its host plant, and then whether these traits influenced
 outcomes for the herbivore. We found that the hemiparasite’s size and leaf
 N depended on the host it parasitized, and these traits in turn affected
 outcomes for E. editha. Specifically, Euphydryas editha survival increased
 with hemiparasite size and caterpillar mass increased with leaf N;
 caterpillars with greater mass were more likely to survive during
 diapause. We also found preliminary evidence that host identity influenced
 iridoid glycoside sequestration by the herbivore. Mean iridoid glycoside
 concentrations in caterpillars ranged from 1-12% depending on the host
 being parasitized by Castilleja. This study demonstrates that root
 parasitism can result in strong indirect effects on higher trophic levels,
 influencing organisms’ survival, growth, and chemical interactions.
description: Data for Haan, Bakker
 and Bowers.csv file with data used
 for Haan, Bakker and Bowers: Hemiparasites can transmit indirect effects
 from host plants to herbivores, published in Ecology.Haan.et.al.Ecology.csv
DOI: 10.5281/zenodo.18382658
title: TABLE 6 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 6. Distribution of sublateral macrochaetae on urotergites and urocoxites of Coryphophthalmus serbicus sp. nov.
Abdominal segmentUrotergitesUrocoxitesmalefemalemalefemaleI–III0000IV–VI0–1 + 0–1000VII2 + 2000VIII4 + 42 + 200IX4 + 43 + 30/5 + 9/00/7 + 9/0X2 + 24 + 4––
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 381 in Zootaxa 4661 (2) on page 381, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5281/zenodo.18382659
title: TABLE 6 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 6. Distribution of sublateral macrochaetae on urotergites and urocoxites of Coryphophthalmus serbicus sp. nov.
Abdominal segmentUrotergitesUrocoxitesmalefemalemalefemaleI–III0000IV–VI0–1 + 0–1000VII2 + 2000VIII4 + 42 + 200IX4 + 43 + 30/5 + 9/00/7 + 9/0X2 + 24 + 4––
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 381 in Zootaxa 4661 (2) on page 381, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5061/dryad.b8s93
title: Data from: Biotic and abiotic modifications of leaf litter during dry periods affect litter mass loss and nitrogen loss during wet periods

description: 1. Decomposition of organic matter in semiarid ecosystems is a key
 component of the terrestrial carbon (C) cycle. The well-known inaccuracies
 in predicting litter decay in water-limited regions were lessened by
 considering solar radiation as an abiotic decay driver of
 photodegradation. Moreover, exposure to high solar irradiance in dry
 periods often led to massive facilitation of litter decay in subsequent
 wet periods (“photoacceleration”), though in many studies this effect was
 absent. 2. Recently, water vapor and dew were identified as modulators
 enabling substantial microbial degradation during rainless periods. Here
 we asked, (i) if the activity of microorganisms modifies litter traits,
 such as litter quality and microbial community in dry periods,
 consequently altering the loss of litter mass and nitrogen (N) in wet
 periods, and (ii) whether it can co-occur with photoacceleration. 3. By
 successively introducing litter to the field at the beginning and the end
 of the dry season, we found that microbial activity during the dry season
 affected litter mass and N loss during the wet season. Low microbial
 activity in the dry season led to inhibition of mass loss in the wet
 season, while high microbial activity led to facilitation of mass loss.
 Microbial activity during the dry season also caused strong inhibition of
 N loss from litter during the wet season, likely by enhancing the
 dry-season N loss. A microclimate manipulation experiment using radiation
 filters showed that microbial activity and exposure to solar radiation
 jointly modified the litter during the dry season and affected subsequent
 decay in the wet season. 4. Knowledge of biotic and abiotic modifications
 of litter during dry periods and their implication for wet periods
 enhances our understanding of litter decay in semiarid regions.
 Furthermore, it can improve biogeochemical model predictions of C and N
 cycling in
description: Archived data_Functional
 Ecology_Gliksman
DOI: 10.5061/dryad.45r6n66
title: Data from: Serum homocysteine level is related to cerebral small vessel disease in a healthy population

description: Objective: To evaluate the relationship between serum total homocysteine
 (tHcy) levels and cerebral small vessel disease (cSVD) in a healthy
 population. Methods: We included consecutive participants who visited our
 department for health check-ups between 2006 and 2013. We rated white
 matter hyperintensity (WMH) volumes using both the Fazekas score and
 semi-automated quantitative methods. We also evaluated lacunes, cerebral
 microbleeds (CMBs), and enlarged perivascular spaces (EPVSs) which are
 involved in cSVD. To assess the dose-dependent relationship between tHcy
 and cSVD parameters, we scored the burdens of each radiological marker of
 cSVD. Results: A total of 1,578 participants were included (age: 55 ± 8
 years, male sex: 57%). In the multivariable analysis, tHcy remained an
 independent predictor of the WMH volume (B = 0.209; 95% confidence
 interval [CI] = 0.033 to 0.385, P = 0.020), presence of CMBs (adjusted
 odds ratio [aOR] = 2.800; 95% CI = 1.104 to 7.105, P = 0.030), and
 moderate-to-severe EPVSs (aOR = 5.906; 95% CI = 3.523 to 9.901, P &lt;
 0.001) after adjusting for confounders. Furthermore, tHcy had positive
 associations with periventricular Fazekas score (P = 0.001, P for trend
 &lt; 0.001), subcortical Fazekas score (P = 0.003, P for trend =
 0.005), and moderate-to-severe EPVS lesion burden (P &lt; 0.001, P for
 trend &lt; 0.001) in a dose-dependent manner. Conclusions: Serum tHcy
 level is correlated with cSVD development in a dose-dependent manner.
 These findings provide us with clues for further studies of the
 pathophysiology of cSVD.
description: Supplemental figure
 e-1Supplemental figure e-1.
 Scattered plots of serum tHcy and WMH volumes/EPVS lesion
 numbers
DOI: 10.5061/dryad.1c979c0
title: Data from: Impact of introduction of Xpert MTB/RIF test on tuberculosis (TB) diagnosis in a city with high TB incidence in Brazil

description: Background: Xpert MTB/RIF is increasingly used in many countries as the
 initial diagnostic test for tuberculosis (TB). Few studies have evaluated
 the effect of Xpert on TB diagnosis under programmatic conditions in
 Brazil. The aim of the present study was to evaluate the impact of
 introduction of Xpert MTB/RIF on TB diagnosis in a city with high TB
 incidence in Brazil. Methods: We included patients evaluated with
 conventional diagnostic tests during one year before Xpert introduction
 (pre-Xpert group) and patients evaluated using Xpert during one year after
 the test introduction (post-Xpert group). Results: 620 patients met the
 inclusion criteria (208 in the pre-Xpert group and 412 in the post-Xpert
 group) and were included in the analysis. The time until TB diagnosis was
 shorter in post-Xpert group (0.7 day, IQR: 0.5–1.0 day) than in pre-Xpert
 group (2.0 days, IQR: 2.0–2.0 days) (p&lt;0.0001). Atypical disease
 characteristics, such as less weight loss, fever, dyspnea, night sweats,
 and hemoptysis; a negative sputum smear; a negative culture, and a chest
 X-ray atypical of TB were more common in post-Xpert group than in
 pre-Xpert group (p&lt;0.0001 for all). Conclusions: We found that the
 implementation of the Xpert MTB/RIF assay, under programmatic conditions,
 improve and facilitate TB diagnosis, especially in cases with atypical
 disease manifestations. These results are likely to be generalizable to
 settings with a similar high TB incidence.
description: Database_PlosOne_v3
DOI: 10.5281/zenodo.18382660
title: TABLE 7 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 7. Main morphological differences of Coryphophthalmus obscurus sp. nov., Coryphophthalmus serbicus sp. nov. and closest congeners.
CharacterC. borgesiC. obscurus sp. nov.C. serbicus sp. nov.C. longitarsusC. remyiLength ratio of antennae and body0.8–0.90.61.4–1.61.2–1.40.9–1.0Ratio of line of contact to length eye0.48–0.580.590.33–0.380.47–0.480.42Ratios of width to length of paired ocelli1.31.21.0–1.11.5–1.81.2Ratio of length to width of hind tibiamale3.0?4.0-4.13.6?female?3.3–3.53.72.6?Length ratio of urostyli (not including apical spines) and urocoxites IXmale0.95?1.130.880.95female0.74–0.850.680.790.700.70Number of spine-like setae on second tarsomere2–710–12–––Number of inner sublateral macrochaetae on urocoxite IX2–33–55–95–610–13Number of divisions in male parameres1 + 6–7?1 + 81 + 61 + 5–6Number of divisions of ovipositor32–3654–5750–5241–4343–49
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 383 in Zootaxa 4661 (2) on page 383, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5281/zenodo.18382661
title: TABLE 7 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 7. Main morphological differences of Coryphophthalmus obscurus sp. nov., Coryphophthalmus serbicus sp. nov. and closest congeners.
CharacterC. borgesiC. obscurus sp. nov.C. serbicus sp. nov.C. longitarsusC. remyiLength ratio of antennae and body0.8–0.90.61.4–1.61.2–1.40.9–1.0Ratio of line of contact to length eye0.48–0.580.590.33–0.380.47–0.480.42Ratios of width to length of paired ocelli1.31.21.0–1.11.5–1.81.2Ratio of length to width of hind tibiamale3.0?4.0-4.13.6?female?3.3–3.53.72.6?Length ratio of urostyli (not including apical spines) and urocoxites IXmale0.95?1.130.880.95female0.74–0.850.680.790.700.70Number of spine-like setae on second tarsomere2–710–12–––Number of inner sublateral macrochaetae on urocoxite IX2–33–55–95–610–13Number of divisions in male parameres1 + 6–7?1 + 81 + 61 + 5–6Number of divisions of ovipositor32–3654–5750–5241–4343–49
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 383 in Zootaxa 4661 (2) on page 383, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5061/dryad.1v640
title: Data from: High invasion potential of Hydrilla verticillata in the Americas predicted using ecological niche modeling combined with genetic data

description: Ecological niche modeling is an effective tool to characterize the spatial
 distribution of suitable areas for species, and it is especially useful
 for predicting the potential distribution of invasive species. The
 widespread submerged plant Hydrilla verticillata (hydrilla) has an obvious
 phylogeographical pattern: Four genetic lineages occupy distinct regions
 in native range, and only one lineage invades the Americas. Here, we aimed
 to evaluate climatic niche conservatism of hydrilla in North America at
 the intraspecific level and explore its invasion potential in the Americas
 by comparing climatic niches in a phylogenetic context. Niche shift was
 found in the invasion process of hydrilla in North America, which is
 probably mainly attributed to high levels of somatic mutation. Dramatic
 changes in range expansion in the Americas were predicted in the situation
 of all four genetic lineages invading the Americas or future climatic
 changes, especially in South America; this suggests that there is a high
 invasion potential of hydrilla in the Americas. Our findings provide
 useful information for the management of hydrilla in the Americas and give
 an example of exploring intraspecific climatic niche to better understand
 species invasion.
description: Bioclimatic variables of
 693 sites693bio.xlsx