cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.uz37ec
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cypripedium formosanum"
 ]
}

 The dataset includes 94 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010001-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88cjvk
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coccoloba swartzii"
 ]
}

 The dataset includes 45 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010002-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-2270407934
title: Joint-Structrual Biology Group (JSBG) BAG proposal for ID29

description: The aim of the JSBG BAG proposal for ID29 beamline is to develop new methods for time-resolved serial crystallography experiments at 4th generation source and to study time dependent structural dynamics of biological macromolecules that are central research topics at the ESRF-EMBL-GR Group. Method developments include the study of radiation damage with µs pulsed X-ray beam at high flux densities and with partially polychromatic X-rays (1% and 0.4%), the implementation and development of various sample delivery methods - mixing in capillary, microfluidics, tape-drive and fixed targets. This further includes development of GPU-based indexing algorithms, data visualization in ICAT, and development of new data collection strategies for pump-probe SSX experiments integrating a nanosecond laser. Biological systems include the study of photoactivable proteins, photoswitchable ligand driven structural dynamics, enzymology, and multi-temp based protein dynamics.
DOI: 10.17882/80974
title: Long-range lateral transport of dissolved manganese and iron in the subarctic Pacific

description: Dissolved Mn and Fe are important micronutrients for marine microorganisms. In this work, we presented comprehensive distributions of dissolved Mn in the subarctic Pacific and compared our Mn data with those of dissolved Fe in the same region. Dissolved Mn and Fe exhibited a scavenged-type and nutrient-type vertical profile, respectively. Most of the dissolved Mn was in the soluble fraction, while dissolved Fe in seawater included colloidal organic ligands. In the surface waters of the Gulf of Alaska, Mn concentrations were high where salinity was low, suggesting a coastal source for Mn. Drawdowns of Fe and nitrate were observed along the salinity gradient. Both Mn and Fe were transported eastward, with log scale transport distances of 3600 km and 3300 km, respectively in the upper intermediate water, and 4700 km and 3400 km, respectively in the lower intermediate water. In the upper intermediate water, Mn showed a strong positive relationship with phosphate, suggesting that regeneration processes could supply Mn to these waters. However, mixing with water masses from the subtropical North Pacific reduced Mn concentration. High dissolved oxygen concentrations in these waters also increased the rate of Mn loss. The transport distance of Mn in the intermediate water of the subarctic Pacific was the highest in the Pacific region. Transport of dissolved Mn and Fe for large distances in the intermediate water could eventually fuel phytoplankton growth at the surface via upwelling processes.
DOI: 10.17882/89142
title: Wind and current speeds in Cook Strait, New Zealand

description: Dataset of atmospheric measurements and current speeds, used to quantify wind- and tides-driven turbulence in a large tidal channel.
Location: Te Moana o Raukawa (Cook Strait) of Aotearoa (New Zealand)
Wind and tides data:
 - Hourly Cape Campbell Atmospheric Weather Station wind records Observing Authority, Agent number, Network number: MetService, 4424, G14722 Latitude (dec.deg),Longitude (dec.deg): -41.727,174.275
 - Upwards-looking Acoustic Doppler Current Profiler (ADCP) current speeds  Sampling frequency: 55 kHz Manufacturer: Nortek  Latitude (dec.deg),Longitude (dec.deg): -41.165,174.581
DOI: 10.15468/dl.ez8kf9
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micrathyria cambridgei"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010003-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17882/89143
title: Ocean Microstructure Glider observations in Cook Strait, New Zealand

description: Here we present an extensive dataset of turbulence from an Ocean Microstructure Glider (OMG) campaign in an energeticly-forced coastal system, Te Moana-o-Raukawa (Cook Strait), the water channel separating the North and South islands of Aotearoa (New Zealand). The microstucture data is combined with glider-based background stratification to study both the mechanisms driving energetic turbulence and its fundamental capacity to mix stratification. 
This study used a Teledyne Webb Research Slocum G2 glider equipped with a Seabird CTD sensor and a Rockland Scientific MicroRider 1000-EM microstructure package. Temperature, conductivity, and pressure data were sampled at 0.5 Hz, and subsequently processed to remove spikes. The accuracy within calibration range of temperature and conductivity were +/-0.002oC and +/-0.0003 S m-1, respectively. Glider data processing was completed using the SOCIB glider toolbox (https://github.com/socib/glider_toolbox; Troupin et al. (2015)). Glider data processing includes salinity lag correction for the thermal lag error for the un-pumped CTD unit. Data were averaged in vertical bins of 1 m. Microstructure measurements of shear and temperature are gathered at 512 Hz, and direct current speeds are recorded by the electromagnetic (EM) current meter mounted adjacently to the microstructure probes.
DOI: 10.17882/98789
title: Near-bottom temperature data obtained from Current and Pressure-recording Inverted Echo Sounders (CPIES) and processed HYCOM data near the Chukchi slope (version 2)

description: Quasi-seasonal and quasi-monthly variations of near-bottom temperature were observed using Current and Pressure-recording Inverted Echo Sounders (CPIES) deployed on the slope between the Canada basin and the Chukchi shelf from August 2018 to July 2020.They were equipped with a 4930R ZPulse Doppler current sensor positioned approximately 51 m above the seafloor, which measured near-bottom current and temperature. Among the variables CPIES measured, we used the near-bottom temperature, the resolution and accuracy of which are 0.01°C and 0.1°C, respectively. We also used temperature, velocity, and sea surface height data from the Hybrid Coordinate Ocean Model (HYCOM). We collected outputs from the HYCOM + NCODA Global 1/12° GOFS 3.1 41-layer analysis (GLBy0.08 Experiment 93.0). It has a horizontal resolution of 0.08° × 0.04° (zonal and meridional, respectively) and a temporal resolution of 3 h.
DOI: 10.17882/101552
title: Population structure and reproductive biology of Alviniconcha hessleri

description: Size structure of populations (shell height in mm) and oocyte size (in µm) distribution of Alviniconcha hessleri from hydrothermal vents along the Mariana back-arc. Individuals were collected at five vent sites in the northern and central regions of the Mariana back-arc (~18.2 to 15.4° N) during the FK161129 Schmidt Ocean Institute cruise in 2016. These data were collected through histological analyses on several individuals from each site.
DOI: 10.17882/102336
title: Global scale surface meso-plankton dataset collected with High-Speed Net and imaged with ZooScan during the Tara Pacific Expedition

description: This dataset consists of a quantitative imaging dataset of ZooScan-imaged mesoplankton (&gt; 200 µm), collected with high-speed net aboard the schooner Tara during the Tara Pacific Expedition (2016-2018). Samples were collected at the surface, generally on a daily frequency, across the Atlantic and Pacific Oceans from open-ocean stations (151 samples; open-ocean label: [i00_oa###]) and from stations in coastal waters of 32 Pacific islands (54 samples; island label: [i##_oa###]). The full description and discussion of this dataset can be found in the associated data paper Mériguet et al. (in rev).
This dataset consists of 256 352 plankton individuals, plankton parts, non-living particles and imaging artefacts, ranging from 300 µm to a few mm, individually imaged and measured with the ZooScan (Gorsky et al., 2010). The objects were classified into 159 taxonomic and morphological groups. All images and their taxonomic annotations are available in the open-access EcoTaxa (Picheral et al., 2017) project at this link: https://ecotaxa.obs-vlfr.fr/prj/11292. The 'EcoTaxa ZooScan Tara Pacific HSN 300 microns export' dataset contains the EcoTaxa tsv exports which associate each object with these metadata (station name, sampling coordinates, sampling date and time, etc., the main metadata are found in the Classic Metadata ZooScan Tara Pacific HSN 330 microns.csv table) and describe it by numerous morphological features extracted from each individual object by ZooProcess. The csv table named 'Export EcoTaxa ZooScan read me.csv' defines the 160 metadata and data found in the EcoTaxa tsv export. The 'Descriptors ZooScan Tara Pacific HSN 330 microns.csv' table combined the data from which we calculated quantitative descriptors of the planktonic communities: abundance (ind.m-3), biovolume (mm3.m-3; as a proxy of biomass) calculated from the area, riddled area and ellipsoidal measurement of each object (see Vandromme et al., 2012 for the 3 calculations of biovolume), and Shannon diversity index. This was done for all taxonomic annotations and for several levels of grouping; living or non-living, plankton groups and trophic association. The individual biovolumes of organisms were arranged in Normalised Biomass Size Spectra (NBSS) as described by Platt (1978), with size expressed as Equivalent Spherical Diameter (ESD, µm). NBSS calculations were made for all taxonomic annotations and for the different levels of grouping. There are available for each station in the NBSS ZooScan Tara Pacific HSN 330 microns csv tables.
DOI: 10.17882/102537
title: Global scale surface meso-plankton and microplastics dataset collected with Manta Net and imaged with ZooScan during the Tara Pacific Expedition

description: This dataset consists of a quantitative imaging dataset of ZooScan-imaged mesoplankton and microplastics, collected with the Manta net (333 µm mesh size) aboard the schooner Tara during the Tara Pacific Expedition (2016-2018). Samples were collected at the surface across the Pacific Oceans from open-ocean stations (32 samples, open-ocean label: [i00_oa###]), with 28 samples located on the Great Pacific Garbage Patch, and from stations in coastal waters of Pacific islands (44 samples; island label: [i##_oa###]). The full description and discussion of this dataset can be found in the associated data paper Mériguet et al. (in rev).  
This dataset consists of 137 497 plankton individuals, plankton parts, non-living particles, microplastics and imaging artefacts, ranging from 200 µm to a few mm, individually imaged and measured with the ZooScan (Gorsky et al., 2010). The objects were classified into 173 taxonomic and morphological groups. All images and their taxonomic annotations are available in the open-access EcoTaxa (Picheral et al., 2017) project at these links: for plankton images https://ecotaxa.obs-vlfr.fr/prj/1344, and for plastics images https://ecotaxa.obs-vlfr.fr/prj/1345. The 'EcoTaxa ZooScan Tara Pacific Manta 333 microns export plankton/plastic' dataset contains the EcoTaxa tsv exports which associate each object with these metadata (station name, sampling coordinates, sampling date and time, etc., the main metadata are found in the Classic Metadata ZooScan Tara Pacific Manta 333 microns.csv table) and describe it by numerous morphological features extracted from each individual object by ZooProcess. The csv table named 'Export EcoTaxa ZooScan read me.csv' defines the 160 variables found in the EcoTaxa tsv export. The 'Descriptors ZooScan Tara Pacific Manta 333 microns.csv' table combined the data from which we calculated quantitative descriptors of the planktonic communities: abundance (ind.m-3), biovolume (mm3.m-3; as a proxy of biomass) calculated from the area, riddled area and ellipsoidal measurement of each object (see Vandromme et al., 2012 for the 3 calculations of biovolume), and Shannon diversity index. This was done for all taxonomic annotations and for several levels of grouping; living or non-living, plankton groups and trophic association. The individual biovolumes of organisms were arranged in Normalised Biomass Size Spectra (NBSS) as described by Platt (1978), with size expressed as Equivalent Spherical Diameter (ESD, µm). NBSS calculations were made for all taxonomic annotations and for the different levels of grouping. There are available for each station in the NBSS ZooScan Tara Pacific Manta 333microns csv tables.
DOI: 10.17882/102694
title: Global scale surface micro-plankton dataset collected with Bongo nets and imaged with FlowCam during the Tara Pacific Expedition

description: This dataset consists of a quantitative imaging dataset of FlowCam-imaged microplankton (&gt; 20 µm), collected with the Bongo nets by scuba divers using an underwater scooter during the Tara Pacific Expedition (2016-2018). Samples were taken from the surface, near reefs and lagoons in the Pacific (37 samples). The full description and discussion of this dataset can be found in the associated data paper Mériguet et al. (in rev).
This dataset consists of 380 769 plankton individuals, plankton parts, non-living particles and imaging artefacts, ranging from 20 µm to 200 µm, individually imaged and measured with the FlowCam (Sieracki et al., 1998). The objects were classified into 163 taxonomic and morphological groups. All images and their taxonomic annotations are available in the open-access EcoTaxa (Picheral et al., 2017) project at these links: subset &lt; 500 pixels (30%) https://ecotaxa.obs-vlfr.fr/prj/11370 and subset &gt; 501 pixels (100%) https://ecotaxa.obs-vlfr.fr/prj/11369. The description of the subsets can be found in the associated data paper (Mériguet et al. in rev). The ‘Export EcoTaxa FlowCam Tara Pacific Bongo 20 microns - Subset 30% &lt; 500 pixels’ and ‘Export EcoTaxa FlowCam Tara Pacific Bongo 20 microns - Subset 100% &gt; 501 pixels’ dataset contains the EcoTaxa tsv exports which associate each object with these metadata (station name, sampling coordinates, sampling date and time, etc., the main metadata are found in the Classic Metadata FlowCam Tara Pacific Bongo 20 microns.csv table) and describe it by numerous morphological features extracted from each individual object by ZooProcess. The csv table named 'Export EcoTaxa FlowCam read me.csv' defines the 202 variables found in the EcoTaxa tsv export. The 'Descriptors FlowCam Tara Pacific Bongo 20 microns.csv' table combined the data from which we calculated quantitative descriptors of the planktonic communities: abundance (ind.m-3), biovolume (mm3.m-3; as a proxy of biomass) calculated from the area, riddled area and ellipsoidal measurement of each object (see Vandromme et al., 2012 for the 3 calculations of biovolume), and Shannon diversity index. This was done for all taxonomic annotations and for several levels of grouping; living or non-living, plankton groups and trophic association. The individual biovolumes of organisms were arranged in Normalised Biomass Size Spectra (NBSS) as described by Platt (1978), with size expressed as Equivalent Spherical Diameter (ESD, µm). NBSS calculations were made for all taxonomic annotations and for the different levels of grouping. There are available for each station in the NBSS FlowCam Tara Pacific Bongo 20 microns csv tables.
DOI: 10.17882/102697
title: Global scale surface micro-plankton dataset collected with Deck Net and imaged with FlowCam during the Tara Pacific Expedition

description: This dataset consists of a quantitative imaging dataset of FlowCam-imaged microplankton (&gt; 20 µm), collected with the Deck Net during the Tara Pacific Expedition (2016-2018). Samples were collected at the surface, generally on a daily frequency, across the Atlantic and Pacific Oceans from open-ocean stations (142 samples; open-ocean label: [i00_oa###]) and from stations in coastal waters of 32 Pacific islands (62 samples; island label: [i##_oa###]). The full description and discussion of this dataset can be found in the associated data paper Mériguet et al. (in rev).
This dataset consists of  1 581 613 plankton individuals, plankton parts, non-living particles and imaging artefacts, ranging from 20 µm to 200 µm, individually imaged and measured with the FlowCam (Sieracki et al., 1998). The objects were classified into 129 taxonomic and morphological groups. All images and their taxonomic annotations are available in the open-access EcoTaxa (Picheral et al., 2017) project at these links: subset &lt; 500 pixels (30%) https://ecotaxa.obs-vlfr.fr/prj/11353 and subset &gt; 501 pixels (100%) https://ecotaxa.obs-vlfr.fr/prj/11341. The description of the subsets can be found in the associated data paper (Mériguet et al. in rev). The 'Export EcoTaxa FlowCam Tara Pacific DN 20 microns subset 30% &lt; 500 pixels' and 'Export EcoTaxa FlowCam Tara Pacific DN 20 microns subset 100% &gt; 501 pixels' dataset contains the EcoTaxa tsv exports which associate each object with these metadata (station name, sampling coordinates, sampling date and time, etc., the main metadata are found in the Classic Metadata FlowCam Tara Pacific DN 20 microns.csv table) and describe it by numerous morphological features extracted from each individual object by ZooProcess. The csv table named 'Export EcoTaxa FlowCam read me.csv' defines the 202 variables found in the EcoTaxa tsv export. The 'Descriptors FlowCam Tara Pacific DN 20 microns.csv' table combined the data from which we calculated quantitative descriptors of the planktonic communities: abundance (ind.m-3), biovolume (mm3.m-3; as a proxy of biomass) calculated from the area, riddled area and ellipsoidal measurement of each object (see Vandromme et al., 2012 for the 3 calculations of biovolume), and Shannon diversity index. This was done for all taxonomic annotations and for several levels of grouping; living or non-living, plankton groups and trophic association. The individual biovolumes of organisms were arranged in Normalised Biomass Size Spectra (NBSS) as described by Platt (1978), with size expressed as Equivalent Spherical Diameter (ESD, µm). NBSS calculations were made for all taxonomic annotations and for the different levels of grouping. There are available for each station in the NBSS FlowCam Tara Pacific DN 20 microns csv tables.
DOI: 10.17882/109521
title: Processed outputs from a community based Lagrangian dispersal experiment testing connectivity among estuaries in the Tropical Southwestern Atlantic

description: We used the Lagrangian dispersal modelling tool Ichthyop (Lett et al. 2008) to track particles representing numerical larvae passively transported by current velocity fields in the Tropical Southwestern Atlantic.To release and recruit particles we selected estuaries along the coast with a clear connection to sea. Then a polygon was defined in the 2x2 cells (a cell is 1/18°) closest to the river mouth in the velocity field grid. Simulations were performed monthly from January 2009 to December 2016, totalling 96 runs. In each simulation, 1000 particles were randomly released within each polygon, from the surface to the seafloor. We adopted a community-based approach by simulating particle dispersal across a continuous range of Planktonic Larval Durations (PLDs). To achieve this, the position of each released particle was tracked for 60 days, and locations were recorded daily, so that each daily record represents organisms with a PLD equal to the number of days since release. PLDs were classified through hierarchical clustering based on the similarity of their connectivity patterns, resulting in three classes. The Short PLD class (1–5 days) represents sessile benthic invertebrates such as corals, sponges, polychaetes, and bryozoans; the Medium PLD class (6–20 days) represents many invertebrates typical of estuarine environments, including crabs, shrimps, bivalves, gastropods, and the medusoid stage of hydrozoans; the Long PLD class (21–60 days) represents estuarine fish, along with certain crustaceans and echinoderms.
DOI: 10.6084/m9.figshare.28516452
title: The effect of total and partial meal replacements on obesity: a systematic review and meta-analysis of randomized controlled trials

description: The objective of this study was to conduct a comprehensive investigation into the effects of MRs on body weight, body mass index (BMI), fat mass, waist circumferences (WC), and leptin. A systematic search was conducted in five databases using established keywords. The random-effects model analysis was used to provide pooled weighted mean difference and 95% confidence intervals (CI). Seventy studies were included in this article. The pooled findings showed that body weight (WMD: −3.35 kg, 95% CI: −4.28 to −2.42), BMI (WMD: −1.12 kg/m<sup>2</sup>, 95% CI: −1.51 to −0.72, <i>p</i> &lt; 0.001), fat mass (WMD: −2.77 kg, 95% CI: −3.59 to −1.6), WC (WMD: −2.82 cm, 95% CI: −3.51 to −2.12) were significantly reduced after total and partial MRs compared to control group. However, no significant effect was observed on leptin (WMD: −3.37 ng/mL, 95% CI: −8.23 to 1.49) compared to the control group. Moreover, subgroup analyses indicated that impact of Total MRs on anthropometric factors was greater in comparison to Partial MRs. Consequently, it appears that MRs, along with other lifestyle factors, can lead to significant weight loss.
DOI: 10.6084/m9.figshare.28516452.v1
title: The effect of total and partial meal replacements on obesity: a systematic review and meta-analysis of randomized controlled trials

description: The objective of this study was to conduct a comprehensive investigation into the effects of MRs on body weight, body mass index (BMI), fat mass, waist circumferences (WC), and leptin. A systematic search was conducted in five databases using established keywords. The random-effects model analysis was used to provide pooled weighted mean difference and 95% confidence intervals (CI). Seventy studies were included in this article. The pooled findings showed that body weight (WMD: −3.35 kg, 95% CI: −4.28 to −2.42), BMI (WMD: −1.12 kg/m<sup>2</sup>, 95% CI: −1.51 to −0.72, <i>p</i> &lt; 0.001), fat mass (WMD: −2.77 kg, 95% CI: −3.59 to −1.6), WC (WMD: −2.82 cm, 95% CI: −3.51 to −2.12) were significantly reduced after total and partial MRs compared to control group. However, no significant effect was observed on leptin (WMD: −3.37 ng/mL, 95% CI: −8.23 to 1.49) compared to the control group. Moreover, subgroup analyses indicated that impact of Total MRs on anthropometric factors was greater in comparison to Partial MRs. Consequently, it appears that MRs, along with other lifestyle factors, can lead to significant weight loss.