cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nami9u
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callogorgia verticillata (Pallas, 1766)"
 ]
}

 The dataset includes 117 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022395-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kc64q2
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptocoryne nurii Furtado"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224010-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zlx7c4
title: Occurrence Download

description: A dataset containing 53485 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Year 1950-2019",
 "Geometry POLYGON((41.96777 71.7627,27.99316 75.54199,15.86426 72.6416,-7.77832 67.63184,-21.48926 67.80762,-28.43262 61.91895,-21.66504 50.75684,-7.41577 49.27368,-5.24048 47.16431,-4.22974 45.42847,-13.72192 43.2312,-18.85254 37.22168,23.77441 36.16699,38.18848 36.34277,39.15527 45.92285,37.30957 51.28418,32.91504 55.06348,34.96948 59.49097,31.7395 62.39136,35.16724 70.05981,41.96777 71.7627))",
 "TaxonKey is Pleurozium schreberi (Willd. ex Brid.) Mitt."
 ]
}

 The dataset includes 53485 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022397-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6zbwp
title: Occurrence Download

description: A dataset containing 4609459 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-80.81543 -3.08496,-81.37793 -4.56152,-81.37793 -5.93262,-79.93652 -6.84668,-78.6709 -9.27246,-76.70215 -12.68262,-76.45605 -14.26465,-73.53808 -16.26856,-70.30371 -18.41309,-69.6709 -17.28809,-68.75684 -16.05762,-69.38965 -15.03809,-68.93262 -13.73731,-68.75684 -12.50684,-69.35449 -11.03027,-70.37402 -10.88965,-70.5498 -9.4834,-71.99121 -9.90527,-73.22168 -8.78027,-73.64355 -7.2334,-72.94043 -5.40527,-70.44434 -4.20996,-70.76074 -3.71777,-69.63574 -2.41699,-72.62402 -2.45215,-75.22559 -0.16699,-78.03809 -2.62793,-79.26855 -4.80762,-80.81543 -3.08496))"
 ]
}

 The dataset includes 4609459 records from 1020 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190169-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2teep6
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andalgalomys roigi Mares & Braun, 1996"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022398-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmzx88
title: Occurrence Download

description: A dataset containing 5755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Moxostoma macrolepidotum (Lesueur, 1817))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5755 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048388-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aajp3n
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "DatasetKey is Cnidaria"
 ]
}

 The dataset includes 41 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191625-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rybya5
title: Occurrence Download

description: A dataset containing 271365 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heteromyidae"
 ]
}

 The dataset includes 271365 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022398-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8929sg
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bolivia (Plurinational State of)",
 "TaxonKey is Contomastix vittata (Boulenger, 1902)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152466-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnyr40
title: Occurrence Download

description: A dataset containing 173822 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-55.23486 -34.77393,-54.26807 -34.86182,-53.30127 -33.80713,-52.15869 -32.33057,-50.75244 -31.2583,-48.73096 -28.53369,-51.27979 -28.2876,-54.00439 -31.18799,-55.23486 -34.77393))"
 ]
}

 The dataset includes 173822 records from 384 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022399-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4v4g3p
title: Occurrence Download

description: A dataset containing 89033 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sinosuthora webbiana (Gould, 1852))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 89033 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071195-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11033970
title: Supporting files for "Simulation-Guided Conformational Space Exploration to Assess Reactive Conformations of a Ribozyme."

description: The archived folder contains the trajectory reported in the paper "Simulation-Guided Conformational Space Exploration to Assess Reactive Conformations of a Ribozyme" by S. Forget, E. Duboue-Dijon, G. Stirnemann, J. Chem. Theory Comput. 2024, as well as all the input and force field files necessary to repeat the simulations, using the Gromacs software.

The Subdirectory "Procedures" contains:



the explicit descriptions of the equilibration procedures with the mdp parameter files of each equilibration steps.

3 scripts which are run to generate the replicas of REST2 simulations.


For any additional information, the authors can be contacted by email: selene.forget@gmail.com and guillaume.stirnemann@ens.psl.eu
DOI: 10.5281/zenodo.11033971
title: Supporting files for "Simulation-Guided Conformational Space Exploration to Assess Reactive Conformations of a Ribozyme."

description: The archived folder contains the trajectory reported in the paper "Simulation-Guided Conformational Space Exploration to Assess Reactive Conformations of a Ribozyme" by S. Forget, E. Duboue-Dijon, G. Stirnemann, J. Chem. Theory Comput. 2024, as well as all the input and force field files necessary to repeat the simulations, using the Gromacs software.

The Subdirectory "Procedures" contains:



the explicit descriptions of the equilibration procedures with the mdp parameter files of each equilibration steps.

3 scripts which are run to generate the replicas of REST2 simulations.


For any additional information, the authors can be contacted by email: selene.forget@gmail.com and guillaume.stirnemann@ens.psl.eu
DOI: 10.15468/dl.cfbass
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "TaxonKey is Pistacia atlantica Desf."
 ]
}

 The dataset's 3 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071206-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgwh3p
title: Occurrence Download

description: A dataset containing 1238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sinosuthora alphonsiana (J.Verreaux, 1870))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1238 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071211-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/24921564.v3
title: Coin Reconstruction Data

description: These data are used for training, testing, and evaluating the CycleGAN project related to coin reconstructions. Data are used to train the given CycleGAN model and coins are used to evaluate the model both internally, computationally, and by other users.<br>trainingData.zip: This file provides training data obtained used to train the CycleGAN. There is a training folder which contains two folders (mixedBadCoins and mixedGoodCoins). The mixedGoodCoins folder contains coins that are better preserved and used to train what a coin should look like. The mixedBadCoins folder contains damaged coins and attempts to train to reconstruct from these coins. The name of each file corresponds to coins that can be found using the identifier for coins referenced on http://numismatics.org.<br>testCoins.zip: These are image data used to test the developed CycleGAN model. The images folder contains the testing data used to generate model test data. The names of the coins correspond to the identifier on http://numismatics.org.<br>CoinsEvaluation.pdf: This file is used by testers to evaluate if they think given reconstructed coins shows improved quality or not from the real coin. The users are asked to evaluate coins on a 1-5 scale, with 1 indicating no difference and 5 indicating much improved reconstructions.<br>testCoinReconstruction.zip: This folder contains real and fake (i.e., reconstructed coins) that is used to ask judges or users to determine if they can tell if a given coin is real or reconstructed (i.e., fake). In addition to the real and reconstructed coins, a pdf (Real_or_Fake.pdf) is used to ask judges to determine which given coins are real and which are generated reconstructions.<br>model1MixedLatest.zip: This is the final CycleGAN model used for reconstructions applied in the paper. This contains relevant parameters and an example of how training is conducted.Model1Mixed.zip: This is a zip file containing real and fake (generated) coins from the model output. This contains all coins evaluated for the paper's results. The index in the folder provides visual representation of the real and generated coins.Coins_For_Paper_Figures.csv: This list helps to correspond the number (in the paper's figures) and identifier used in http://numismatics.org.
DOI: 10.5281/zenodo.11615514
title: Protected gap closing and reopening in topological-insulator Josephson junctions - Dataset

description: This dataset contains experimental and numerical data as presented in the manuscript 'Protected gap closing and reopening in topological-insulatorJosephson junctions' by Jakob Schluck, Ella Nikodem, Anton Montag, Alexander Ziesen, Mahasweta Bagchi, Fabian Hassler, and Yoichi Ando.

The data presented in the experimental figures is given in csv files, where the physical quantities and their units are described in the headers.

Regarding the data presented in figure 2a and 2b, obtained by numerical simulations, please consider the following:

simulation.py:    Program used for the Kwant-simulation. It produces the file 'data.npz'. N denotes    the number of points that have to be calculated along energy and phase.

plot.py:    Program that uses 'data.npz' as input and produces the plot shown in the manuscript.

    The temperature is introduced by smearing the zero-temperature data with the Fermi    functions due to the lead.

    As the BCS peak is very sharp, we are not sure that we hit it for each value of the    phase. Because of this, we postprocess the data by a running average over 100 points    in the phase.

data.npz:    Data-file in numpy format    The conductance for zero temperature is saved on a regular grid    'xs': the energy values    'ys': the phase values    'data': the conductance values

    Note that the values in the file are obtained by a combination of different runs    where care have been taken to sample more points close to the BCS peak, followed    by an interpolation to bring the data on a regular grid. Because of the interpolation,    the values reported in the file 'data.npz' can slightly differ from the value obtained    by running simulation.py at the respective point.
DOI: 10.15468/dl.v4v7cb
title: Occurrence Download

description: A dataset containing 6557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agropsar philippensis (J.R.Forster, 1781))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6557 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071212-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11618195
title: Klimadaten Bremen Station 691, Zeitraum 1900-2022 - Heizperiode und meteorologischer Sommer mit Gradtagzahlen

description: Aufbereitete Klimadaten (Mittelwerte Lufttemperatur) des Deutschen Wetterdienstes (DWD) der Station Bremen im Zeitraum von 1900 bis 2022 zur Auswertung von Trends, betreffend den meteorolgischen Sommer sowie die Heizperioden.

Zusätzlich aufbereitete Gradtagzahlen (Heiz- und Kühltage) von 1993 bis 2022 für Bremen, entnommen dem Gradtagzahlenrechner des Instituts Wohnen und Umwelt (IWU).
DOI: 10.5281/zenodo.11618196
title: Klimadaten Bremen Station 691, Zeitraum 1900-2022 - Heizperiode und meteorologischer Sommer mit Gradtagzahlen

description: Aufbereitete Klimadaten (Mittelwerte Lufttemperatur) des Deutschen Wetterdienstes (DWD) der Station Bremen im Zeitraum von 1900 bis 2022 zur Auswertung von Trends, betreffend den meteorolgischen Sommer sowie die Heizperioden.

Zusätzlich aufbereitete Gradtagzahlen (Heiz- und Kühltage) von 1993 bis 2022 für Bremen, entnommen dem Gradtagzahlenrechner des Instituts Wohnen und Umwelt (IWU).
DOI: 10.15468/dl.px9mhb
title: Occurrence Download

description: A dataset containing 274942 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acer negundo L., Ailanthus altissima (Mill.) Swingle, Alternanthera philoxeroides (Mart.) Griseb., Aponogeton distachyos L.f., Arundo donax L., Asclepias syriaca L., Azolla filiculoides Lam., Baccharis halimifolia L., Cabomba caroliniana A.Gray, Carpobrotus N.E.Br., Cotoneaster horizontalis Decne., Elodea densa (Planch.) Casp., Pontederia crassipes Mart., Elaeagnus angustifolia L., Elodea canadensis Michx., Elodea nuttallii (Planch.) H.St.John, Fallopia baldschuanica (Regel) Holub, Fraxinus pennsylvanica Marshall, Gymnocoronis spilanthoides DC., Helianthus tuberosus L., Helianthus ×laetiflorus Pers., Heracleum mantegazzianum Sommier & Levier, Hydrilla verticillata (L.f.) Royle, Hydrocotyle ranunculoides L.fil., Impatiens capensis Meerb., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Laburnum anagyroides Medik., Lagarosiphon major (Ridl.) Moss, Lemna minuta Kunth, Lemna turionifera Landolt, Hydrocharis laevigata (Humb. & Bonpl. ex Willd.) Byng & Christenh., Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Mahonia aquifolium (Pursh) Nutt., Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Myriophyllum rubricaule Valk. & Duist., Parthenocissus inserta (A.Kern.) Fritsch, Parthenocissus quinquefolia (L.) Planch., Parthenocissus tricuspidata (Siebold & Zucc.) Planch., Pistia stratiotes L., Prunus laurocerasus L., Prunus serotina Ehrh., Reynoutria japonica Houtt., Reynoutria sachalinensis (F.Schmidt) Nakai, Reynoutria ×bohemica Chrtek & Chrtková, Rhus typhina L., Robinia pseudoacacia L., Rosa rugosa Thunb., Rubus armeniacus Focke, Rudbeckia laciniata L., Salvinia ×molesta D.S.Mitch., Solidago canadensis L., Solidago gigantea Aiton, Spiraea alba Du Roi, Spiraea douglasii Hook., Spiraea salicifolia L., Spiraea tomentosa L., Spiraea ×billardii Hérincq)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Specimen, Unknown evidence)",
 "Country is Belgium"
 ]
}

 The dataset includes 274942 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071197-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xa68q
title: Occurrence Download

description: A dataset containing 8037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agropsar sturninus (Pallas, 1776))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8037 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071214-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47yavk
title: Occurrence Download

description: A dataset listing the 692 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Antarctica, Europe, North America)",
 "TaxonKey is Cerastium L."
 ]
}

 The dataset's 692 records were derived from 3784 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071209-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdanb2
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pteria penguin",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 63 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006013-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1176183.10fu
title: SH1176183.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1176188.10fu
title: SH1176188.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1176189.10fu
title: SH1176189.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1176194.10fu
title: SH1176194.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.