cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5793159.v1
title: Additional file 13: of Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

description: Contains fold-change data for genes grouped by metal bound by each protein based on gene ontology (GO) annotation in UniProtKB database. (XLSX 143 kb)
DOI: 10.6084/m9.figshare.5793147
title: Additional file 9: Table S7. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: GO analysis results in ADLPAPT mice. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.5793147.v1
title: Additional file 9: Table S7. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: GO analysis results in ADLPAPT mice. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.5793141
title: Additional file 12: of Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

description: Contains data on ribosomal protein genes, organized by operon. Fold-change values of differentially expressed regulator genes for each operon and the genes they regulate are indicated. Also indicated are RHg or Hg adduct observations by LCMS/MS (Zink, et al., in preparation). Differential expression of other translation-related genes organized by function are shown below the r-proteins table. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.5793141.v1
title: Additional file 12: of Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

description: Contains data on ribosomal protein genes, organized by operon. Fold-change values of differentially expressed regulator genes for each operon and the genes they regulate are indicated. Also indicated are RHg or Hg adduct observations by LCMS/MS (Zink, et al., in preparation). Differential expression of other translation-related genes organized by function are shown below the r-proteins table. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.5793135
title: Additional file 8: Table S6. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: DEPs in ADLPAPT mice, DEPsAPT. (XLSX 195 kb)
DOI: 10.6084/m9.figshare.5793135.v1
title: Additional file 8: Table S6. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: DEPs in ADLPAPT mice, DEPsAPT. (XLSX 195 kb)
DOI: 10.6084/m9.figshare.5793123
title: Additional file 1: Table S1. of The evolutionary process of mammalian sex determination genes focusing on marsupial SRYs

description: The functionally important amino acid residues and substitutions in SRY. Table S2. The pair of proteins and DNA used for the molecular dynamics analysis. Table S3. The list of amino acid residues interacting with DNA. Table S4. The values of the binding energy of protein and DNA. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5793123.v1
title: Additional file 1: Table S1. of The evolutionary process of mammalian sex determination genes focusing on marsupial SRYs

description: The functionally important amino acid residues and substitutions in SRY. Table S2. The pair of proteins and DNA used for the molecular dynamics analysis. Table S3. The list of amino acid residues interacting with DNA. Table S4. The values of the binding energy of protein and DNA. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5793117
title: Additional file 11: of Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

description: Contains data that corresponds to heat map figures, including gene ID, gene name, gene description, and log2 fold-change values for significantly differentially expressed genes under mercury exposed conditions and â 0â designates expression that was not significantly different from unexposed culture at the same time point. (XLSX 95 kb)
DOI: 10.6084/m9.figshare.5793117.v1
title: Additional file 11: of Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

description: Contains data that corresponds to heat map figures, including gene ID, gene name, gene description, and log2 fold-change values for significantly differentially expressed genes under mercury exposed conditions and â 0â designates expression that was not significantly different from unexposed culture at the same time point. (XLSX 95 kb)
DOI: 10.6084/m9.figshare.5793114
title: Additional file 7: Table S5. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: Canonical pathways enriched by IPA analysis. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5793114.v1
title: Additional file 7: Table S5. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: Canonical pathways enriched by IPA analysis. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5793102
title: Additional file 10: of Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

description: fold-change data for transcription factor genes and corresponding regulon genes for each during mercurial exposure based on RegulonDB annotation. (XLSX 501 kb)
DOI: 10.6084/m9.figshare.5793102.v1
title: Additional file 10: of Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

description: fold-change data for transcription factor genes and corresponding regulon genes for each during mercurial exposure based on RegulonDB annotation. (XLSX 501 kb)
DOI: 10.6084/m9.figshare.5793090
title: Additional file 6: Table S4. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: DEPs from ANOVA test. (XLSX 391 kb)
DOI: 10.6084/m9.figshare.5793090.v1
title: Additional file 6: Table S4. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: DEPs from ANOVA test. (XLSX 391 kb)
DOI: 10.6084/m9.figshare.5793075
title: Additional file 5: Table S3. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: Significantly regulated proteins from t-test. (XLSX 170 kb)
DOI: 10.6084/m9.figshare.5793075.v1
title: Additional file 5: Table S3. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: Significantly regulated proteins from t-test. (XLSX 170 kb)
DOI: 10.6084/m9.figshare.5793054
title: Additional file 4: Table S2. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: All quantified protein groups. (XLSX 4540 kb)
DOI: 10.6084/m9.figshare.5793054.v1
title: Additional file 4: Table S2. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: All quantified protein groups. (XLSX 4540 kb)
DOI: 10.6084/m9.figshare.5793039
title: MOESM2 of An automated framework for QSAR model building

description: Additional file 2. QSAR modeling workflow source file. A zipped file of the QSAR modeling workflow is provided.
DOI: 10.6084/m9.figshare.5793039.v1
title: MOESM2 of An automated framework for QSAR model building

description: Additional file 2. QSAR modeling workflow source file. A zipped file of the QSAR modeling workflow is provided.
DOI: 10.6084/m9.figshare.5793036
title: Additional file 3: Table S1. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: All identified protein groups. (XLSX 1130 kb)
DOI: 10.6084/m9.figshare.5793036.v1
title: Additional file 3: Table S1. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: All identified protein groups. (XLSX 1130 kb)
DOI: 10.6084/m9.figshare.5793030
title: Additional file 4: of Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis

description: Multimorbidity patterns in men &gt;80 years across the period analysed. Patterns defined by prevalence &gt;20% and ratio O/E &gt; 2. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.5793030.v1
title: Additional file 4: of Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis

description: Multimorbidity patterns in men &gt;80 years across the period analysed. Patterns defined by prevalence &gt;20% and ratio O/E &gt; 2. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.5793021
title: Additional file 2: of Use of easy measurable phenotypic traits as a complementary approach to evaluate the population structure and diversity in a high heterozygous panel of tetraploid clones and cultivars

description: Summary of scores for phenotypic traits on 144 potato genotypes. The scores for phenotypic traits: AG(a priori group), TY (tuber yield), CT (number of commercial tuber), AS (tuber aspect), FR (Fusarium solani infection), SR (Streptomyces scabies infection), IN (internal necrosis), HH (hollow heart),ID (insect damage level), TC (occurrence of tuber crack), ST (skin type), SC (skin color), FC (flesh color), S(tuber shape), ED (eye depth), TZ (tuber size), CQ (chip quality) and DM (dry matter) are presented for 144 potato genotypes order by its index label. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.5793021.v1
title: Additional file 2: of Use of easy measurable phenotypic traits as a complementary approach to evaluate the population structure and diversity in a high heterozygous panel of tetraploid clones and cultivars

description: Summary of scores for phenotypic traits on 144 potato genotypes. The scores for phenotypic traits: AG(a priori group), TY (tuber yield), CT (number of commercial tuber), AS (tuber aspect), FR (Fusarium solani infection), SR (Streptomyces scabies infection), IN (internal necrosis), HH (hollow heart),ID (insect damage level), TC (occurrence of tuber crack), ST (skin type), SC (skin color), FC (flesh color), S(tuber shape), ED (eye depth), TZ (tuber size), CQ (chip quality) and DM (dry matter) are presented for 144 potato genotypes order by its index label. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.5793018
title: MOESM1 of An automated framework for QSAR model building

description: Additional file 1. Figure S1. KNIME overview of automated QSAR modeling workflow. Figure S2. ChEMBLdb meta node. Figure S3. Nfold cross validation meta node. Figure S4. MeanMSE meta node. Figure S5. Stepwise estimation models meta node. Figure S6. Output files generated by automated QSAR modeling workflow. Figure S7. Mispredictions of over-fitted models. Table S1. Data modelability measure (MODI_ssR2) versus QSAR_PVE for 30 datasets.
DOI: 10.6084/m9.figshare.5793018.v1
title: MOESM1 of An automated framework for QSAR model building

description: Additional file 1. Figure S1. KNIME overview of automated QSAR modeling workflow. Figure S2. ChEMBLdb meta node. Figure S3. Nfold cross validation meta node. Figure S4. MeanMSE meta node. Figure S5. Stepwise estimation models meta node. Figure S6. Output files generated by automated QSAR modeling workflow. Figure S7. Mispredictions of over-fitted models. Table S1. Data modelability measure (MODI_ssR2) versus QSAR_PVE for 30 datasets.
DOI: 10.6084/m9.figshare.5793006
title: Additional file 1: of Use of easy measurable phenotypic traits as a complementary approach to evaluate the population structure and diversity in a high heterozygous panel of tetraploid clones and cultivars

description: Summary of potato genotypes evaluated by different approaches. For each genotypes evaluated, the name, a priori group which is linked, source of germplasm, ploidy level and type of screening performed are detailed. 1North West provinces of Argentine. (XLS 61 kb)
DOI: 10.6084/m9.figshare.5793006.v1
title: Additional file 1: of Use of easy measurable phenotypic traits as a complementary approach to evaluate the population structure and diversity in a high heterozygous panel of tetraploid clones and cultivars

description: Summary of potato genotypes evaluated by different approaches. For each genotypes evaluated, the name, a priori group which is linked, source of germplasm, ploidy level and type of screening performed are detailed. 1North West provinces of Argentine. (XLS 61 kb)
DOI: 10.6084/m9.figshare.5793000
title: Additional file 3: of Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis

description: Multimorbidity patterns in women aged &gt;80 years across the period analysed. Patterns defined by prevalence &gt;20% and ratio O/E &gt; 2. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.5793000.v1
title: Additional file 3: of Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis

description: Multimorbidity patterns in women aged &gt;80 years across the period analysed. Patterns defined by prevalence &gt;20% and ratio O/E &gt; 2. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.5792982
title: Additional file 2: of Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis

description: Multimorbidity patterns in men 65–79 years across the period analysed. Patterns defined by prevalence &gt;20% and ratio O/E &gt; 2. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.5792982.v1
title: Additional file 2: of Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis

description: Multimorbidity patterns in men 65–79 years across the period analysed. Patterns defined by prevalence &gt;20% and ratio O/E &gt; 2. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.5792973
title: Additional file 12: Table S10. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: GO analysis of commonly significant proteins in human and ADLPAPT. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5792973.v1
title: Additional file 12: Table S10. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: GO analysis of commonly significant proteins in human and ADLPAPT. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5792964
title: Additional file 2: Table S2. of Transcriptome profiling of whitefly guts in response to Tomato yellow leaf curl virus infection

description: Sequences of primers used in the study. Displayed are the sequence of the primers used for qRT-PCR. Primers were synthesized by GenScript (Nanjing, China). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5792964.v1
title: Additional file 2: Table S2. of Transcriptome profiling of whitefly guts in response to Tomato yellow leaf curl virus infection

description: Sequences of primers used in the study. Displayed are the sequence of the primers used for qRT-PCR. Primers were synthesized by GenScript (Nanjing, China). (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5792949
title: Additional file 1: of Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis

description: Multimorbidity patterns in women 65–79 years across the period analysed. Patterns defined by prevalence &gt;20% and ratio O/E &gt; 2. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.5792949.v1
title: Additional file 1: of Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis

description: Multimorbidity patterns in women 65–79 years across the period analysed. Patterns defined by prevalence &gt;20% and ratio O/E &gt; 2. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.5792943
title: Additional file 11: Table S9. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: Exclusive DEPsAPT. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.5792943.v1
title: Additional file 11: Table S9. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: Exclusive DEPsAPT. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.5792934
title: Additional file 1: Table S1. of Transcriptome profiling of whitefly guts in response to Tomato yellow leaf curl virus infection

description: DEGs involved in Lysosome. Displayed are the fold changes of DEGs involved in Lysosome of viruliferous guts in comparison to nonviruliferous guts. aThe function of the homologous gene. bFC, fold change (log2 ratio) of gene expression. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.5792934.v1
title: Additional file 1: Table S1. of Transcriptome profiling of whitefly guts in response to Tomato yellow leaf curl virus infection

description: DEGs involved in Lysosome. Displayed are the fold changes of DEGs involved in Lysosome of viruliferous guts in comparison to nonviruliferous guts. aThe function of the homologous gene. bFC, fold change (log2 ratio) of gene expression. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.5792925
title: Additional file 10: Table S8. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: IPA analysis results in ADLPAPT mice. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.5792925.v1
title: Additional file 10: Table S8. of Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

description: IPA analysis results in ADLPAPT mice. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.5792916
title: Dataset for: Optogenetically-enhanced Axon Regeneration: Motor- versus Sensory- Neuron Specific Stimulation

description: Brief neuronal activation in injured peripheral nerves is both necessary and sufficient to enhance motor axon regeneration, and this effect is specific to the activated motoneurons. It is less clear whether sensory neurons respond in a similar manner to neuronal activation following peripheral axotomy. Further, it is unknown to what extent enhancement of axon regeneration with increased neuronal activity relies on a reflexive interaction within the spinal circuitry. We used mouse genetics and optical tools to evaluate the precision and selectivity of system-specific neuronal activation to enhance axon regeneration in a mixed nerve. We evaluated sensory and motor axon regeneration in two different mouse models expressing the light-sensitive cation channel, channel rhodopsin (ChR2). We selectively activated either sensory or motor axons using light stimulation and transected and repaired the sciatic nerve. Regardless of genotype, the number of ChR2-positive neurons whose axons had regenerated successfully was greater following system-specific optical treatment, with no effect on the number of ChR2-negative neurons (whether motor or sensory neurons). We conclude that acute system-specific neuronal activation is sufficient to enhance both motor and sensory axon regeneration. This regeneration-enhancing effect is likely cell autonomous.
DOI: 10.6084/m9.figshare.5792916.v1
title: Dataset for: Optogenetically-enhanced Axon Regeneration: Motor- versus Sensory- Neuron Specific Stimulation

description: Brief neuronal activation in injured peripheral nerves is both necessary and sufficient to enhance motor axon regeneration, and this effect is specific to the activated motoneurons. It is less clear whether sensory neurons respond in a similar manner to neuronal activation following peripheral axotomy. Further, it is unknown to what extent enhancement of axon regeneration with increased neuronal activity relies on a reflexive interaction within the spinal circuitry. We used mouse genetics and optical tools to evaluate the precision and selectivity of system-specific neuronal activation to enhance axon regeneration in a mixed nerve. We evaluated sensory and motor axon regeneration in two different mouse models expressing the light-sensitive cation channel, channel rhodopsin (ChR2). We selectively activated either sensory or motor axons using light stimulation and transected and repaired the sciatic nerve. Regardless of genotype, the number of ChR2-positive neurons whose axons had regenerated successfully was greater following system-specific optical treatment, with no effect on the number of ChR2-negative neurons (whether motor or sensory neurons). We conclude that acute system-specific neuronal activation is sufficient to enhance both motor and sensory axon regeneration. This regeneration-enhancing effect is likely cell autonomous.
DOI: 10.6084/m9.figshare.5792853
title: VQ_Boise.dat

description: Velocity and quality factor of P wave in water-saturated Boise sandstone yielding from an improved Biot model.<br>The first column is log(f) where f has a unit of Hz.The second colum is velocity with a unit of m/s.The third column is log(quality_factor).
DOI: 10.6084/m9.figshare.5792853.v1
title: VQ_Boise.dat

description: Velocity and quality factor of P wave in water-saturated Boise sandstone yielding from an improved Biot model.<br>The first column is log(f) where f has a unit of Hz.The second colum is velocity with a unit of m/s.The third column is log(quality_factor).
DOI: 10.6084/m9.figshare.5792832
title: The effects of salinity on growth and survival of mangrove seedlings changes with age

description: ABSTRACT Six wide-ranging mangrove species, Rhizophora apiculata, R. mucronata, Avicennia marina, A. officinalis, Bruguiera gymnorrhiza, and B. sexangula, were selected to study the growth and survival of seedlings under three contrasting salinity treatments over a 30-week period: low (3-5psu), moderate (15-17psu) and high (33-36psu). Seedlings grown under high salinity exhibited significantly lower performance (p&lt;0.05) in survival rates, cumulative shoot height, mean growth rates, mean total leaf area, and mean dry weight, compared to those under low and moderate salinity regimes. The low salinity treatment provided the best conditions for initial establishment and growth of the seedlings of all species until 15-20 weeks of age. However, the same seedlings showed better performance under moderate salinity after 15-20 weeks of age (shift in optimal salinity), implying that adaptation to salt and physiological needs of mangrove seedlings varies with age. These results have practical implications of use in raising up mangrove nurse species for planting since it indicates that seedlings should get low salinity water until four to five months of age and then moderately saline water, in order to achieve maximum growth and survival.
DOI: 10.6084/m9.figshare.5792832.v1
title: The effects of salinity on growth and survival of mangrove seedlings changes with age

description: ABSTRACT Six wide-ranging mangrove species, Rhizophora apiculata, R. mucronata, Avicennia marina, A. officinalis, Bruguiera gymnorrhiza, and B. sexangula, were selected to study the growth and survival of seedlings under three contrasting salinity treatments over a 30-week period: low (3-5psu), moderate (15-17psu) and high (33-36psu). Seedlings grown under high salinity exhibited significantly lower performance (p&lt;0.05) in survival rates, cumulative shoot height, mean growth rates, mean total leaf area, and mean dry weight, compared to those under low and moderate salinity regimes. The low salinity treatment provided the best conditions for initial establishment and growth of the seedlings of all species until 15-20 weeks of age. However, the same seedlings showed better performance under moderate salinity after 15-20 weeks of age (shift in optimal salinity), implying that adaptation to salt and physiological needs of mangrove seedlings varies with age. These results have practical implications of use in raising up mangrove nurse species for planting since it indicates that seedlings should get low salinity water until four to five months of age and then moderately saline water, in order to achieve maximum growth and survival.