cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5849634.v4
title: Integrating Ecopath with Ecosim into the MSP software - conceptual design

description: Ecopath International Initiative Research Organization (EII) has been commissioned to conceptualize the integration of the Ecopath with Ecosim (EwE) food web modelling approach into the Marine Spatial Planning (MSP) Challenge 2050 software.<br><br>The MSP Challenge 2050 serious game is an immersive, three-dimensional software system that educates stakeholders, planners and the general public about trade-offs and environmental consequences of planning decisions in the marine and coastal ecosystem over space and time (Stolte et al., 2013). The ecology component in the MSP software is a simplification of a EwE model of the North Sea based on Mackinson and Daskalov (2007). This food web model was recently reviewed and was deemed unsuitable to deliver useful ecological predictions, even for game purposes<br>(Steenbeek, 2015). Rather than fixing identified shortcomings in the MSP software, it has been decided to replace the MSP ecology calculations with a direct link to EwE.<br><br>This document provides the conceptual design of this linkage from the EwE point of view. A brief overview of EwE and its internal structure is given. Capabilities of EwE to<br>incorporate MSP player input into its food web dynamics, and the mechanisms to provide game feedback back to MSP, are identified. The essential data flow to and from EwE is explained, and a conceptual communication protocol between MSP and EwE is provided <br>
DOI: 10.6084/m9.figshare.8332481.v7
title: Renal osteodystrophy and biomarkers in KTX

description: <b>Serum osteocalcin predicts HTO-ROD in KTRs</b>
DOI: 10.17632/5mzvrgrhjn
title: HDL functionality is dependent on hepatocyte stress defense factors Nrf1 and Nrf2

description: High density lipoproteins (HDL) promote homeostasis and counteract stressful tissue damage that underlie cardiovascular and other diseases by mediating reverse cholesterol transport, reducing inflammation, and abrogating oxidative damage. However, metabolically stressful conditions associated with atherosclerosis can impair these effects. Hepatocytes play a major role in the genesis and maturation of circulating HDL, and liver stress elicits marked regulatory changes to circulating HDL abundance and composition, which affect its functionality. The mechanisms linking liver stress to HDL function are incompletely understood. In this study, we sought to determine whether stress defending transcription factors nuclear factor erythroid 2 related factor-1 (Nrf1) and -2 (Nrf2) promote hepatocyte production of functional HDL. Using genetically engineered mice briefly fed a mild metabolically stressful diet, we investigated the effect of hepatocyte-specific deletion of Nrf1, Nrf2, or both on circulating HDL cholesterol, protein composition, and function. Combined deletion, but not single gene deletion, reduced HDL cholesterol and apolipoprotein A1 levels as well as the capacity of HDL to accept cholesterol undergoing efflux from cultured macrophages and to counteract tumor necrosis factor -induced inflammatory effect on cultured endothelial cells. This coincided with substantial alteration to the HDL proteome, which correlated with liver gene expression profiles of corresponding proteins. Thus, our findings show complementary actions by hepatocyte Nrf1 and Nrf2 play a role in shaping HDL abundance and composition to promote production of functionally viable HDL. Consequently, our study illuminates the possibility that enhancing stress defense programming in the liver may improve atheroprotective and perhaps other health promoting actions of HDL.
DOI: 10.17632/2x3kwrtcrw
title: Emotional labor

description: Emotional labor, emotional exhaustion, job performance and customer loyalty
DOI: 10.6084/m9.figshare.19891039.v1
title: Supplementary Data_sea cow_Campos et al.xlsx

description: An annotated dataset of fossil, sub-fossil, and recent records for Steller's sea cows, including undisputed and disputed records.
DOI: 10.17632/9jykc6g8h3
title: Data for: Mindfulness Brain Painting Enhances Foreign Language Memory and Cognition through Human-Computer Interaction and Brain-Computer Interface

description: Revised Version: Counting_for_memorizing_english_words xlsx is the file for recording the number of memorizing English words. Mindfulness_mindpainting, mindfulness_mindpainting_music and mindfulness_only are the data files for recording meditation and attention value on memorizing and meditation process.
DOI: 10.17632/67247kxyg3
title: Buy the Wholesale Collection of Beads Jewelry

description: Gemexi is a well-known name in beads jewelry at the wholesale price since 1973. We offer you a variety of sterling silver beads jewelry at a reasonable price. You can find here the best collection of beads jewelry wholesale in different varieties. Like you can find beautiful beads ring,  beads bracelets wholesale, and beads earrings. The beautiful adjustable beads rings collection is also available at wholesale price silver beads necklace.
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DOI: 10.6084/m9.figshare.20938039.v1
title: M2020 Perverance Mars Pressure Analysis

description: Data analisis for figures in the paper: Mars 2020 Perseverance rover studies of the Martian atmosphere over Jezero from pressure measurements JGR-Planets
DOI: 10.6084/m9.figshare.22652617.v1
title: climate

description: This is the climate folder for the LGM runs
DOI: 10.6084/m9.figshare.22022636.v1
title: fenotipo CVS.xlsx

description: In total, approximately 30 animals were used from each of the 11 families for the experimental design (entirely randomized) to evaluate the growth and body parts yield (rib, loin and head). Each full-sib family was kept separate until the moment of pit-tagging (approximately 8 months old) in 1m³ tanks, connected to a water recirculation system, with mechanical and biological filters, external aeration system and temperature controlled by thermal controller connected to heater (2x500 w). Temperature, dissolved oxygen and pH were measured with the Multiparameter Water Quality Checker U-50 probe (Horiba, Kyoto, Japan). The water temperature was maintained at 30 °C (± 0.5), with dissolved oxygen at 5.0 mg / L (± 1.0) and pH at 7.2 (± 1.0). After tagging, the juveniles of the different families were weighed (initial weight) and distributed in three 200 m² earth ponds, with approx. 10 individuals from each family per tank. Then, each pond consisted of approximately 110 animals, which shared this environment during the evaluation period. The growth performance experiment was carried out for about 15 months. The mean values of the water parameters measured were: temperature (28.3 °C), pH (6.6) and oxygen (5.6 mg / l). The experimental ponds belong to the facilities of the Aquaculture Center of Unesp (Jaboticabal, Brazil), where the breeding nucleus is located. During the experiment, the fish were fed pelleted diets from 2 to 6 mm (36% crude protein, commercial diet Nutripiscis Presence). The amount of feed was established according to the biomass of each tank (5% of the total weight of fish), based on a sub-sample weighed every quarter. The fish were euthanized for the slaughtering experiment with benzocaine overdose (100 mg/L) and every effort was made to ensure animal welfare and minimize animal suffering. Seven growth traits were evaluated in the end of the growth period, obtaining the following measurements: total weight (We); standard length (SL), comprised between the anterior end of the head and the smallest perimeter of the caudal peduncle (region of insertion of the caudal fin); head length (HL), comprised between the anterior end of the head and the caudal edge of the operculum; head height (HH); height 1 (H1) of the body, measured in the region from the 1st ray of the dorsal fin to the 1st ray of the pelvic fin; pelvis length (PL), comprised between the anterior base of the pelvic fin and the anterior base of the anal fin; width (Wi). After biometrics, each fish was slaughtered in the following body regions: head, rib, loin, R+L (rib + loin) and carcass (corresponding to the vertebral skeleton, fins and viscera). The body regions were individually weighed with an analytical balance. Slaughtering was performed by one person. Yields were calculated by dividing the weight of the different body regions by the total body weight: head yield (% head), rib yield (% rib), loin yield (% loin) and R+L yield (% R+L).
DOI: 10.6084/m9.figshare.25634115.v1
title: A paired dataset of multi-modal MRI at 3 Tesla and 7 Tesla with manual hippocampal subfield segmentations on 7T T2-weighted images

description: We disseminate a dataset comprising paired 3T and 7T MRI scans from 20 healthy volunteers, with manual hippocampal subfield annotations on 7T T2-weighted images. This dataset is designed to support the development and evaluation of both 3T-to-7T MR image synthesis models and automated hippocampal segmentation algorithms on 3T images. We assessed the image quality using MRIQC. The dataset is freely accessible on IEEE DataPort, a data repository created by IEEE and can be found at the following URL: https://ieeexplore.ieee.org/document/10218394/algorithms?tabFilter=dataset. The shared dataset comprises four principal directories.The first directory contains raw MRI data in <i>.ima</i> format within <i>rawdata_DICOM</i>. Additionally, the acquired MRI scans were converted from DICOM to the Neuroimaging Informatics Technology Initiative (NIfTI) format and organized in accordance with the Brain Imaging Data Structure (BIDS) format by employing the BIDScoin Python application (version 4.3.0) and stored in <i>rawdata_BIDS</i> directory.The third directory pertains to hippocampal subfield segmentation and includes two subdirectories: '<i>hippo_subfield\7T_T2w_0.7_for_subfield_delineation</i>', featuring 7T T2w MRI data downsampled to a 0.7 mm slice thickness through B-spline interpolation, post Gaussian smoothing denoising and N4 bias field correction using Advanced Normalization Tools (ANTs); and <i>'hippo_subfield\hippo_label</i>', which contains the manual segmentation labels for hippocampal subregions for each subject. The fourth directory,<i> \MRIQC</i>, designated for the results of quality control assessments. For each participant, the<i> \MRIQC </i>directories contain <i>\anat</i> and <i>\func</i> subdirectories, which hold image quality metric reports for T1w, T2w, and resting-state functional scans. These quality metrics, available in both <i>.html</i> and <i>.json</i> formats, aid in evaluating data quality and provide estimates of motion, signal-to-noise ratios, and intensity non-uniformities, supplemented with visual reports.It is noteworthy that, due to detectable head motion during the original scans, the 3T T2w images for two participants were subject to rescanning. Subsequently, only the datasets from these supplementary sessions have been preserved within the <i>rawdata\BIDS</i> directory for further quality evaluation. Additionally, Diffusion Weighted Imaging (DWI) sequences included in the <i>rawdata\DICOM</i> directory for 3T MRI were not matched with 7T MRI sequences and, thus, are excluded from the BIDS-formatted shared dataset.<br>
DOI: 10.6084/m9.figshare.27130305.v2
title: Meteorological data

description: Temperature, humidity, precipitation, wind speed
DOI: 10.6084/m9.figshare.6263876.v1
title: C. PIPIENS MERGED ANVIO PROFILES

description: <b>Anvi'o merged profiles for C. pipiens ovary samples.</b><br>Details of the study and a reproducible bioinformatics workflow:<br>http://merenlab.org/data/wolbachia-plasmid/<br><br>All public data files in this collection:<br>https://figshare.com/projects/A_Wolbachia_Plasmid_by_Reveillaud_and_Bordenstein_et_al_2018_/32069
DOI: 10.6084/m9.figshare.17701097.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 06
DOI: 10.6084/m9.figshare.23659779.v1
title: Supplementary Material for: Intermittent Orbital Pain due to Hemodynamic Collapse of an Orbital Varix: A Case Report

description: Introduction: Orbital varices typically present with symptoms related to dilation or thrombosis. We describe a rare presentation of an orbital varix with pain caused by hemodynamic collapse of the varix. Case description: A woman in the third decade presented with position-dependent orbital pain and enophthalmos. She was found to have an intraorbital varix and a separate pterygoid varix. The patient underwent endovascular treatment of the pterygoid varix using coils and sclerosing agents which altered the venous outflow from the orbital varix. The patient had immediate resolution of symptoms after the procedure. Conclusions: Our findings suggest that extraorbital venous outflow abnormalities may be the cause of symptoms in select cases of orbital varices. By understanding the venous structures on cerebral angiography and treating the extraorbital component, orbital intervention may be avoided, reducing the risk of complications.
DOI: 10.6084/m9.figshare.28369766.v3
title: Data and R codes for Zhang et al. "The dark diversity concept as a framework for reconciling Darwin’s naturalization conundrum for fish establishment"

description: Data and R codes for Zhang et al. "The dark diversity concept as a framework for reconciling Darwin’s naturalization conundrum for fish establishment"
DOI: 10.6084/m9.figshare.7345976.v1
title: raw_data.zip

description: <pre>Contains all raw data as downloaded from GBIF per genus. </pre><pre>Further information and explanation of the data can be found at GBIF: <br></pre><pre>https://www.gbif.org/data-quality-requirements-occurrences<br></pre>
DOI: 10.6084/m9.figshare.17209610.v2
title: lct_corpus.tar.gz

description: The Leaf Clinical Trials (LCT) corpus: an annotated corpus of clinical trials eligibility criteria.<br>
DOI: 10.6084/m9.figshare.25521346.v1
title: Asian Swamp Eel (Synbranchidae: <i>Monopterus</i>) occurrence data in Florida 1997–2023

description: Asian swamp eels (<i>Monopterus albus</i>/<i>javanensis</i>) were first reported as introduced to Florida water bodies in 1997 near Tampa and Miami; a third population was recorded by 1999 in Homestead. We used records from continuous long-term monitoring programs, sporadic monitoring studies, and online databases to reconstruct swamp eel presence across Florida from 1997–2022. We used additional records from 2023 and January 2024 to illustrate further range expansions and fill in spatial gaps.Data and figures accompany this publication: Pintar, MR, ND Strickland, JL Kline, MI Cook, and NJ Dorn. Asian swamp eels (Synbranchidae: <i>Monopterus</i>) in Florida: distribution, spread, and range of hydrologic tolerance over twenty-seven years (1997–2023). Aquatic Invasions 19 (2): 233–258.
DOI: 10.6084/m9.figshare.28320341.v3
title: Vocal attributes of rivals and territory holders interact to drive aggression in a tropical frog.

description: Data and code for article "Vocal attributes of rivals and territory holders interact to drive aggression in a tropical frog" updated code and script on the 16th March 2025.Added metadata (README word files) on the 9th of April 2025.
DOI: 10.6084/m9.figshare.5402035.v1
title: Supplementary Material for: Injury Resistance in the Setting of Liver Fibrosis Is Accompanied by the Inhibition of High-Mobility Group Box-1 Translocation and Release

description: <b><i>Background:</i></b> Injury resistance occurring in the setting of liver fibrosis is an interesting phenomenon not yet well characterized. In the present study, we investigated dynamically the injury resistance against acute challenge using animal models of hepatic fibrosis and spontaneous resolution, and focused on high-mobility group box-1 (HMGB1), an important proinflammatory mediator. <b><i>Methods:</i></b> The hepatic damage of control, fibrosis (CCl<sub>4</sub>, 6 weeks), and regressive mice with or without CCl<sub>4</sub> challenge was dynamically observed and compared. The translocation and release of HMGB1 were assessed by immunohistochemical staining and enzyme-linked immunosorbent assay, respectively. The gene expression of proinflammatory mediators was detected by real-time PCR. <b><i>Results:</i></b> Our data showed that the fibrotic mice were invulnerable to acute CCl<sub>4</sub> insult. The injury resistance diminished along with the resolution of liver fibrosis. Acute insult triggered the translocation and release of HMGB1 in control mice, which were remarkably inhibited in fibrotic mice, even under acute challenge. Nevertheless, regressive mice exhibited obvious translocation upon insult, especially for R12d mice. HMGB1-related proinflammatory immune responses were suppressed in fibrotic mice; however, they were restored in regressive mice upon insult. <b><i>Conclusion:</i></b> The injury resistance in the setting of liver fibrosis is accompanied by the inhibition of HMGB1 translocation and release as well as the suppression of HMGB1-related proinflammatory immune responses.
DOI: 10.6084/m9.figshare.13043390.v1
title: delta_epsilon_subdivisions.zip

description: GeneHunt based identification of Glycoside Hydrolases in (completely) sequenced bacterial genomes - retrieved from PATRIC.brc. <br>Ref for GeneHunt: https://www.nature.com/articles/s41598-019-46290-w. <br>File types: SEQ_strain.txt : <br>Fasta formated AA sequence of identified GH in "strain" <br>STAT_stain.txt: Stat for all the Prot. Domain in GHs identified in "strain" <br>G0_strain.pdf: graphical representation of the GHs in the sequenced chromosome of "strain" <br>G1_strain.pdf: graphical representation of all the GHs in the sequenced chromosome of "strain"
DOI: 10.6084/m9.figshare.21378612.v4
title: DATASET: To what extent grazing affects environmental, agronomic and economical ecosystem service indicators of semi-natural grasslands?

description: This file regroup the datasets (.csv) and the R script (.R) related to the paper from Mesbahi et al entitled <em>To what extent grazing affect environmental, agronomic and economical ecosystem service indicators of semi-natural grasslands?</em> There are information about climate, soil, management, yield, mutritive value, economic profitability, plant diversity and carbon stocks from 58 permanent grasslands from the Vosges Moutains (northeastern France).
DOI: 10.6084/m9.figshare.7508798.v1
title: EFFECT OF NITROGEN-FIXING BACTERIA ON GRAIN YIELD AND DEVELOPMENT OF FLOODED IRRIGATED RICE

description: ABSTRACT: This study aimed at evaluating the effect of Azospirillum brasilense, a nitrogen-fixing bacterium, on flooded irrigated rice yield. Evaluations were carried out in a shaded nursery, with seedlings grown on an Alfisol. Were performed two sets of experiments. In the first, were carried out four experiments using the flooded rice cultivars INIA Olimar, Puitá Inta-CL, Br Irga 409 and Irga 424; these trials were set up as completely randomized design in a 5x4 factorial scheme, with four replications. Treatments consisted of five nitrogen rates (0, 40, 80, 120 and 160 kg ha-1) and four levels of liquid inoculant Ab-V5 and Ab-V6 - A. brasilense (0, 1, 2 and 4 times the manufacturer's recommendation) without seed treatment. In second set, were performed two experiments using the cultivars Puitá Inta-CL and Br Irga 409, arranged in the same design, but using a 4x2 factorial. In this set, treatments were composed of four levels of Ab-V5 and Ab-V6 - A. brasilense liquid inoculant (0, 1, 2 and 4 times the recommendation of 100 mL ha-1), using rice seeds with and without insecticide and fungicide treatment. Shoot dry matter, number of panicles, and rice grain yield per pot were the assessed variables. The results showed that rice seed inoculation with A. brasilense had no effects on rice grain yield of the cultivars INIA Olimar, Puitá Inta-CL, Br Irga 409 and Irga 424.
DOI: 10.6084/m9.figshare.24311704.v2
title: Data of ''On how neural networks enhance quantum state tomography with constrained measurements"

description: Data of ''On how neural networks enhance quantum state tomography with constrained measurements
DOI: 10.6084/m9.figshare.7891046.v1
title: gVCF_HG01486

description: 1000 Genomes gVCF mapped to hs37d5 for HG01486. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/9f8n5wv6p3
title:  Role of Anterior Midcingulate Cortex in Self-Reward Representation and Reward Allocation Judgments within Social Context

description: 	In this study, we aimed to disentangle the neural correlates underlying reward processes and social decision-making since previous findings have been inconsistent. Specifically, we manipulated share sizes of dictator games (DG) and examined the brain activation in response to value of reward for the self/others without or within context using fMRI. Then, we collected data regarding willingness and preference for making these offers in a post-scan behavioral task. Furthermore, we examined how elicited neural activities vary with individual differences from the aspect of self-benefit, altruism, and reward distribution context.
DOI: 10.6084/m9.figshare.15015369.v1
title: Supplementary Material for: Thyroid Disease Is Associated with Higher Age-Related Macular Degeneration Risk: Results from a Meta-Analysis of Epidemiologic Studies

description: <b><i>Background:</i></b> Although epidemiologic studies have suggested that thyroid disease may be a risk factor for age-related macular degeneration (AMD), this finding is still controversial. <b><i>Objectives:</i></b> The aim of this meta-analysis was to investigate whether an association exists between thyroid disease and medication and AMD in epidemiologic studies. <b><i>Methods:</i></b> We searched PubMed, EMBASE, and Google Scholar from their inception to March 2020 for cross-sectional, case-control, and cohort studies that assessed thyroid function and AMD risk. Data from selected studies were extracted, and a meta-analysis was performed using fixed-effects or random-effects models. The statistical heterogeneity (<i>I</i><sup>2</sup>) among studies and the possibility of publication bias were evaluated. If <i>I</i><sup>2</sup> &gt;50%, a significant heterogeneity existed among studies, and a random-effects model was used to calculate the pooled RR. Otherwise, a fixed-effects model was performed. <b><i>Results:</i></b> A total of 13 epidemiologic studies that consisted of 7 thyroid disease and 7 thyroid medication studies were included. Statistically significant heterogeneity was observed in the study results (<i>I</i><sup>2</sup><sub>thyroid disease</sub> = 80.1%; <i>I</i><sup>2</sup><sub>thyroid medication</sub> = 69.0%). A significant positive association was found between thyroid disease and AMD, with an overall relative risk (RR) of 1.25 (95% CI: 1.02, 1.54). However, there was no statistical association between thyroid medication and AMD risk (pooled RR 1.26 [95% CI: 0.92–1.72]). Egger’s test indicated that there was no significant publication bias for thyroid disease (<i>p</i> = 0.889) or thyroid medication (<i>p</i> = 0.226). <b><i>Conclusions:</i></b> Our findings indicate that thyroid disease is associated with higher AMD risk. Thyroid disease prevention strategies may have a significant effect on the prevention of AMD and warrant further evaluation.