cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5u3r9v
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DNK.2.1_1",
 "TaxonKey is Jacobaea vulgaris Gaertn."
 ]
}

 The dataset includes 355 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024366-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc9v64g
title: CCDC 293295: Experimental Crystal Structure Determination

description: Related Article: Hong-Yin He, Yi-Li Zhou, Long-Guan Zhu|2005|Z.Kristallogr.-New Cryst.Struct.|220|445|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccnjvff
title: CCDC 612015: Experimental Crystal Structure Determination

description: Related Article: P.G.Jones, H.Thonnessen|2006|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.uh7usq
title: Occurrence Download

description: A dataset containing 1030 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lavandula viridis L'Hér."
 ]
}

 The dataset includes 1030 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024368-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ngnjp
title: Occurrence Download

description: A dataset containing 577307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia)",
 "TaxonKey is Orchidaceae"
 ]
}

 The dataset includes 577307 records from 716 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024334-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv5unp
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024369-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhexvu
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.394799439934728 43.252733338512726,-8.05765821517211 43.252733338512726,-8.05765821517211 43.589874563275345,-8.394799439934728 43.589874563275345,-8.394799439934728 43.252733338512726))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hedychium gardnerianum Sheph. ex Ker Gawl."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024372-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pzbk3
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024370-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erndmx
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024371-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25375/uct.19630203
title: Data for publication by Motchon et al "Effect of biomaterial stiffness on cardiac mechanics in a biventricular infarcted rat heart model with microstructural representation of in situ intramyocardial injectate"

description: 1. Excel files:

 ED_ES_Strain_injectate.xlsx: End systolic/diastolic maximum and minimum principal strain for injectate
 ED_ES_Strain_myocardium.xlsx: End systolic/diastolic myofibre and cross-fibre strain in the myocardium

2. Word document: ED_ES_Strain_statistical data.docx

 End systolic and end diastolic descriptive statistics values in the myocarduim and the injectate region for Einj = 4.1 to 405900 kPa
 Each table contains the mean, median, first and third quartile values from strain distribution
 The data were obtained for (i) myofibre and cross-fibre strain (in myocardium) and (ii) maximum and minimum principal strain (in the injectate region)

3. Abaqus CAE file: BV_Model.cae

 Abaqus file with the model details
 Material parameters for the injectate and the myocarduim are implemented 

4. Python files (as zip archive): 

 \Python Codes Ploting Box plots\Injectate\
 boxplotED_ES_MaxPrinc.py: loads strain data and plot box plot figures of injectate
 postProcesDataPlotFunctions.py: contains function to plot histograms and box plots
 \Python Codes Ploting Box plots\myocardium\
 boxplotED_ES_Myo_Cross.py: loads strain data and plot box plot figures of myocardium
 postProcesDataPlotFunctions.py: contains function to plot histograms and box plots
DOI: 10.25375/uct.19630203.v1
title: Data for Effect of biomaterial stiffness on cardiac mechanics in a biventricular infarcted rat heart model with microstructural representation of in situ intramyocardial injectate

description: 1. Excel files:

 ED_ES_Strain_injectate.xlsx: End systolic/diastolic maximum and minimum principal strain for injectate
 ED_ES_Strain_myocardium.xlsx: End systolic/diastolic myofibre and cross-fibre strain in the myocardium

2. Word document: ED_ES_Strain_statistical data.docx

 End systolic and end diastolic descriptive statistics values in the myocarduim and the injectate region for Einj = 4.1 to 405900 kPa
 Each table contains the mean, median, first and third quartile values from strain distribution
 The data were obtained for (i) myofibre and cross-fibre strain (in myocardium) and (ii) maximum and minimum principal strain (in the injectate region)

3. Abaqus CAE file: BV_Model.cae

 Abaqus file with the model details
 Material parameters for the injectate and the myocarduim are implemented 

4. Python files (as zip archive): 

 \Python Codes Ploting Box plots\Injectate\
 boxplotED_ES_MaxPrinc.py: loads strain data and plot box plot figures of injectate
 postProcesDataPlotFunctions.py: contains function to plot histograms and box plots
 \Python Codes Ploting Box plots\myocardium\
 boxplotED_ES_Myo_Cross.py: loads strain data and plot box plot figures of myocardium
 postProcesDataPlotFunctions.py: contains function to plot histograms and box plots
DOI: 10.25375/uct.19630203.v2
title: Data for publication by Motchon et al "Effect of biomaterial stiffness on cardiac mechanics in a biventricular infarcted rat heart model with microstructural representation of in situ intramyocardial injectate"

description: 1. Excel files:

 ED_ES_Strain_injectate.xlsx: End systolic/diastolic maximum and minimum principal strain for injectate
 ED_ES_Strain_myocardium.xlsx: End systolic/diastolic myofibre and cross-fibre strain in the myocardium

2. Word document: ED_ES_Strain_statistical data.docx

 End systolic and end diastolic descriptive statistics values in the myocarduim and the injectate region for Einj = 4.1 to 405900 kPa
 Each table contains the mean, median, first and third quartile values from strain distribution
 The data were obtained for (i) myofibre and cross-fibre strain (in myocardium) and (ii) maximum and minimum principal strain (in the injectate region)

3. Abaqus CAE file: BV_Model.cae

 Abaqus file with the model details
 Material parameters for the injectate and the myocarduim are implemented 

4. Python files (as zip archive): 

 \Python Codes Ploting Box plots\Injectate\
 boxplotED_ES_MaxPrinc.py: loads strain data and plot box plot figures of injectate
 postProcesDataPlotFunctions.py: contains function to plot histograms and box plots
 \Python Codes Ploting Box plots\myocardium\
 boxplotED_ES_Myo_Cross.py: loads strain data and plot box plot figures of myocardium
 postProcesDataPlotFunctions.py: contains function to plot histograms and box plots
DOI: 10.25375/uct.17693510
title: Data for "Effect of paclitaxel treatment on cellular mechanics and morphology of oesophageal squamous cell carcinoma of South African origin in 2D and 3D environments"

description: Number of files: 3<br><br>File 1: P085 Microrheology Data.xlsx<br>Number of spreadsheets: 4<br>Description: Mitochondrial mean square displacement (MSD) and power law coefficient (Alpha) for cells in 2D and 3D environments<br><br>File 2: P085 Morphology Data.xlsx<br>Number of spreadsheets: 1<br>Description: Morphometric characteristics of cells in different experimental groups in 2D and 3D enviroments<br><br>File 3: P085 VAMPIRE Analysis.xlsx<br>Number of spreadsheets: 4<br>Description: Data of visually aided morpho-phenotyping of cells in different experimental groups in 2D and 3D enviroments
DOI: 10.25375/uct.17693510.v1
title: Data for "Effect of paclitaxel treatment on cellular mechanics and morphology of oesophageal squamous cell carcinoma of South African origin in 2D and 3D environments"

description: Number of files: 3<br><br>File 1: P085 Microrheology Data.xlsx<br>Number of spreadsheets: 4<br>Description: Mitochondrial mean square displacement (MSD) and power law coefficient (Alpha) for cells in 2D and 3D environments<br><br>File 2: P085 Morphology Data.xlsx<br>Number of spreadsheets: 1<br>Description: Morphometric characteristics of cells in different experimental groups in 2D and 3D enviroments<br><br>File 3: P085 VAMPIRE Analysis.xlsx<br>Number of spreadsheets: 4<br>Description: Data of visually aided morpho-phenotyping of cells in different experimental groups in 2D and 3D enviroments
DOI: 10.21227/j6g4-rh93
title: EIGait Dataset

description: This dataset mentioned in the article "the EIGait dataset mentioned in the pubilication "Environment Independent Gait Recognition Based on Wi-Fi Signals". This dataset was collected using a pair of Wi-Fi transceivers gathering channel state information of human walking, with the transmitter featuring an omnidirectional antenna and the receiver having three omnidirectional antennas. Data was collected in four indoor environments, where eight users walked along  24 directions. For specific environments and directions arrangements, please refer to the article. Each user walked ten times in each direction. After extracting this compressed dataset, you will find files named like xxxx_aa_bbb_cc.dat, where xxx represents the environment, aa indicates the user, bbb refers to the direction, and cc denotes the number of repetiiton.
DOI: 10.15468/dl.b2uhvy
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024374-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25375/uct.17620877
title: Data for Mathematical Model of Mechanosensing and Mechanically Induced Collective Motility of Cells on Planar Elastic Substrates

description: MATLAB CODE
Three archives containing Matlab code for simulation with different cases.

 Displacement with uniform substrate.zip
 Displacement with variable substrate elasticity.zip
 Displacement with variable substrate thickness.zip

<br>
Common files in all archives and their function:

 circle.m: Draw a single cell like a complete circle.
 circles.m: Calculate the initial positions of the cells.
 Mcircles.m: Plot cell positions.
 Random.m: Calculate the Brownian motion.

<br>
Additional archive specific files and their function: 
<br>
Archive “Displacement with uniform substrate.zip”:

 Displacement.m: Main code that combines all other functions and calculates cell displacement on uniform substrate (i.e. with constant elasticity and thickness).
 distance.m: A function to compute the strain energy density and the resultant vectors in x and y directions.

<br>
Archive “Displacement with variable substrate elasticity.zip”:

 Migration_with_different_substrate_elasticity.m: Main code that combines all functions to calculate cell displacement on a substrate with variable elastic modulus and constant thickness.
 Elasticity.m: A function to calculate the strain energy density with two different substrate elastic modulus and a constant substrate thickness.

<br>
Archive “Displacement with variable substrate thickness.zip”:

 Migration_with_different_substrate_thickness.m: Main code that combines the other functions to calculate cell displacement on a substrate with variable thickness and constant elastic modulus.
 Thickness.m: A function to calculate the strain energy density with two different substrate thickness and constant substrate elastic modulus.

<br>
SUPPLEMENTAL VIDEOS
Videos showing simulations of cell migration for cases reported in the manuscript. Video numbers correspond to Figure numbers in the manuscript.

 Video V4A: Collective motility of 25 cells on uniform substrate with deterministic motion 
 Video V4B: Collective motility of 25 cells on uniform substrate with random motion
 Video V6A: Motility of 4 cells with deterministic motion on substrate with regionally varying elastic modulus
 Video V6B: Motility of 15 cells with deterministic motion on substrate with regionally varying elastic modulus
 Video V7A: Motility of 4 cells with deterministic motion on substrate with regionally varying thickness
 Video V7B: Motility of 15 cells with deterministic motion on substrate with regionally varying thickness
 Video V8A: Motility of 45 cells with deterministic motion on uniform substrate with cell death
 Video V8B: Motility of 45 cells with deterministic motion on uniform substrate with cell division
 Video V8C: Motility of 45 cells with deterministic motion on uniform substrate with cell death and division
 Video V8D: Motility of 45 cells with random motion on uniform substrate with cell death and division (there is no corresponding figure in the manuscript)<br>
DOI: 10.25375/uct.17620877.v1
title: Data for Mathematical Model of Mechanosensing and Mechanically Induced Collective Motility of Cells on Planar Elastic Substrates

description: MATLAB CODE
Three archives containing Matlab code for simulation with different cases.

 Displacement with uniform substrate.zip
 Displacement with variable substrate elasticity.zip
 Displacement with variable substrate thickness.zip

<br>
Common files in all archives and their function:

 circle.m: Draw a single cell like a complete circle.
 circles.m: Calculate the initial positions of the cells.
 Mcircles.m: Plot cell positions.
 Random.m: Calculate the Brownian motion.

<br>
Additional archive specific files and their function: 
<br>
Archive “Displacement with uniform substrate.zip”:

 Displacement.m: Main code that combines all other functions and calculates cell displacement on uniform substrate (i.e. with constant elasticity and thickness).
 distance.m: A function to compute the strain energy density and the resultant vectors in x and y directions.

<br>
Archive “Displacement with variable substrate elasticity.zip”:

 Migration_with_different_substrate_elasticity.m: Main code that combines all functions to calculate cell displacement on a substrate with variable elastic modulus and constant thickness.
 Elasticity.m: A function to calculate the strain energy density with two different substrate elastic modulus and a constant substrate thickness.

<br>
Archive “Displacement with variable substrate thickness.zip”:

 Migration_with_different_substrate_thickness.m: Main code that combines the other functions to calculate cell displacement on a substrate with variable thickness and constant elastic modulus.
 Thickness.m: A function to calculate the strain energy density with two different substrate thickness and constant substrate elastic modulus.

<br>
SUPPLEMENTAL VIDEOS
Videos showing simulations of cell migration for cases reported in the manuscript. Video numbers correspond to Figure numbers in the manuscript.

 Video V4A: Collective motility of 25 cells on uniform substrate with deterministic motion 
 Video V4B: Collective motility of 25 cells on uniform substrate with random motion
 Video V6A: Motility of 4 cells with deterministic motion on substrate with regionally varying elastic modulus
 Video V6B: Motility of 15 cells with deterministic motion on substrate with regionally varying elastic modulus
 Video V7A: Motility of 4 cells with deterministic motion on substrate with regionally varying thickness
 Video V7B: Motility of 15 cells with deterministic motion on substrate with regionally varying thickness
 Video V8A: Motility of 45 cells with deterministic motion on uniform substrate with cell death
 Video V8B: Motility of 45 cells with deterministic motion on uniform substrate with cell division
 Video V8C: Motility of 45 cells with deterministic motion on uniform substrate with cell death and division
 Video V8D: Motility of 45 cells with random motion on uniform substrate with cell death and division (there is no corresponding figure in the manuscript)<br>
DOI: 10.15468/dl.zvz5s8
title: Occurrence Download

description: A dataset containing 10384 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Finnmarkseiendommen (FeFo)"
 ]
}

 The dataset includes 10384 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024376-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.weavk2
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024375-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ze9qer
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024378-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xzpwv7
title: Occurrence Download

description: A dataset containing 797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Platysoma lineare Erichson, 1834"
 ]
}

 The dataset includes 797 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024382-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bq3tat
title: Occurrence Download

description: A dataset containing 10384 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Finnmarkseiendommen (FeFo)"
 ]
}

 The dataset includes 10384 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024383-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mb4au9
title: Occurrence Download

description: A dataset containing 10384 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Finnmarkseiendommen (FeFo)"
 ]
}

 The dataset includes 10384 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024384-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4sz2fg
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024380-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sh2pxg
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024377-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmjzf7
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024379-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvur6e
title: Occurrence Download

description: A dataset containing 60688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Fjellstyrene"
 ]
}

 The dataset includes 60688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024381-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.