cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc7v2vz
title: CCDC 233611: Experimental Crystal Structure Determination

description: Related Article: C.Muller, W.Massa, T.Miekisch, K.Dehnicke|2004|Z.Anorg.Allg.Chem.|630|977|doi:10.1002/zaac.200400073
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc76rrx
title: CCDC 215039: Experimental Crystal Structure Determination

description: Related Article: S.Dill, J.Glaser, M.Strobele, S.Tragl, H.-J.Meyer|2004|Z.Anorg.Allg.Chem.|630|987|doi:10.1002/zaac.200400036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7s5hn
title: CCDC 231771: Experimental Crystal Structure Determination

description: Related Article: D.Lentz, M.Patzschke|2004|Z.Anorg.Allg.Chem.|630|973|doi:10.1002/zaac.200400051
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7s5jp
title: CCDC 231772: Experimental Crystal Structure Determination

description: Related Article: D.Lentz, M.Patzschke|2004|Z.Anorg.Allg.Chem.|630|973|doi:10.1002/zaac.200400051
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78x9p
title: CCDC 217102: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xbq
title: CCDC 217103: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xcr
title: CCDC 217104: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xft
title: CCDC 217106: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xgv
title: CCDC 217107: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xhw
title: CCDC 217108: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xjx
title: CCDC 217109: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xky
title: CCDC 217110: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xlz
title: CCDC 217111: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2005|J.Mol.Struct.|751|41|doi:10.1016/j.molstruc.2005.04.014
description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xm0
title: CCDC 217112: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xn1
title: CCDC 217113: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xp2
title: CCDC 217114: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xq3
title: CCDC 217115: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xr4
title: CCDC 217116: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.28098287
title: Supplementary Data for the manuscript "Male sterility in <i>Drosophila mojavensis</i> × <i>D. arizonae</i> hybrids is not caused by gene movements in the Y chromosome" (T. Vanderlinde et al.)

description: This Figshare record contains all data and scripts associated with our investigation of Y chromosome gene content in <i>Drosophila arizonae</i>, <i>D. mojavensis</i>, and related species. The files here support the findings described in our manuscript, where we explored the hypothesis that an essential male fertility gene might have moved from the Y chromosome to an autosome in the <i>D. arizonae</i> lineage.1. Annotation and Alignment of GI18320 Orthologs<b>File:</b> <code>G18320_repletagrp_cds6.fasta</code>Annotated coding sequences (CDS) of the GI18320 ortholog in <i>D. navojoa</i>, <i>D. adrichi</i>, <i>D. buzzatii</i>, and <i>D. repleta</i>. These species provide a comparative framework increasingly distant from our focal species <i>D. arizonae</i> and <i>D. mojavensis</i>.<b>File:</b> <code>GI18320_repletagrp_cds8_aln.fas</code>Alignment of the above CDS, with poorly aligned regions removed. Two gaps were introduced in the <i>D. mojavensis</i> autosomal pseudogene to correct the reading frame.2. HyPhy Analysis Script<b>File:</b> <code>GI18320_v11.bf</code>Implements dN/dS estimation and hypothesis testing using HyPhy (Kosakovsky Pond et al. 2005; Windows version 2.2.4). The best-fitting substitution model (HKY85, coded as <code>010010</code>) was automatically selected by HyPhy.3. Corrected Reference TranscriptomesWe provide four corrected reference transcriptomes for each species—<i>D. mojavensis</i>, <i>D. arizonae</i>, <i>D. navojoa</i>, and <i>D. virilis</i>:<b>Files:</b><code>moj_all_cds_corrected.fasta</code><code>ari_all_cds_corrected.fasta</code><code>nav_all_cds_corrected.fasta</code><code>vir_all_cds_corrected.fasta</code>These transcriptomes had all sequences corresponding to the 14 annotated Y-linked genes removed using <code>cd-hit-est-2d</code> (Li and Godzik 2006). The correctly annotated Y-linked genes were then reintroduced, and RSEM was run to quantify expression.4. Y-linked Sequences<b>File:</b> <code>Y-linkedgenes_CDS_moj_ari_nav</code>Includes the Y-linked sequences for <i>D. mojavensis</i>, <i>D. arizonae</i>, and <i>D. navojoa</i>, used to confirm the presence or copy number of these genes across species.5. YGS resultsWe provide the results generated by the YGS (Y-chromosome Genome Scan) procedure for each of the three focal species:<code>moj_YGS_output.txt</code><code>navojoa_YGS_output.txt</code><code>ari_YGS_output.txt</code>These datasets and scripts enable the replication of our analyses on Y-linked genes, their copy numbers, and their evolutionary dynamics in the <i>D. repleta</i> species group. For additional details on methodology, please refer to the Methods section of our manuscript.<br><br>
DOI: 10.6084/m9.figshare.28098287.v2
title: Supplementary Data for the manuscript "Male sterility in <i>Drosophila mojavensis</i> × <i>D. arizonae</i> hybrids is not caused by gene movements in the Y chromosome" (T. Vanderlinde et al.)

description: This Figshare record contains all data and scripts associated with our investigation of Y chromosome gene content in <i>Drosophila arizonae</i>, <i>D. mojavensis</i>, and related species. The files here support the findings described in our manuscript, where we explored the hypothesis that an essential male fertility gene might have moved from the Y chromosome to an autosome in the <i>D. arizonae</i> lineage.1. Annotation and Alignment of GI18320 Orthologs<b>File:</b> <code>G18320_repletagrp_cds6.fasta</code>Annotated coding sequences (CDS) of the GI18320 ortholog in <i>D. navojoa</i>, <i>D. adrichi</i>, <i>D. buzzatii</i>, and <i>D. repleta</i>. These species provide a comparative framework increasingly distant from our focal species <i>D. arizonae</i> and <i>D. mojavensis</i>.<b>File:</b> <code>GI18320_repletagrp_cds8_aln.fas</code>Alignment of the above CDS, with poorly aligned regions removed. Two gaps were introduced in the <i>D. mojavensis</i> autosomal pseudogene to correct the reading frame.2. HyPhy Analysis Script<b>File:</b> <code>GI18320_v11.bf</code>Implements dN/dS estimation and hypothesis testing using HyPhy (Kosakovsky Pond et al. 2005; Windows version 2.2.4). The best-fitting substitution model (HKY85, coded as <code>010010</code>) was automatically selected by HyPhy.3. Corrected Reference TranscriptomesWe provide four corrected reference transcriptomes for each species—<i>D. mojavensis</i>, <i>D. arizonae</i>, <i>D. navojoa</i>, and <i>D. virilis</i>:<b>Files:</b><code>moj_all_cds_corrected.fasta</code><code>ari_all_cds_corrected.fasta</code><code>nav_all_cds_corrected.fasta</code><code>vir_all_cds_corrected.fasta</code>These transcriptomes had all sequences corresponding to the 14 annotated Y-linked genes removed using <code>cd-hit-est-2d</code> (Li and Godzik 2006). The correctly annotated Y-linked genes were then reintroduced, and RSEM was run to quantify expression.4. Y-linked Sequences<b>File:</b> <code>Y-linkedgenes_CDS_moj_ari_nav</code>Includes the Y-linked sequences for <i>D. mojavensis</i>, <i>D. arizonae</i>, and <i>D. navojoa</i>, used to confirm the presence or copy number of these genes across species.5. YGS resultsWe provide the results generated by the YGS (Y-chromosome Genome Scan) procedure for each of the three focal species:<code>moj_YGS_output.txt</code><code>navojoa_YGS_output.txt</code><code>ari_YGS_output.txt</code>These datasets and scripts enable the replication of our analyses on Y-linked genes, their copy numbers, and their evolutionary dynamics in the <i>D. repleta</i> species group. For additional details on methodology, please refer to the Methods section of our manuscript.<br><br>
DOI: 10.5517/cc78xs5
title: CCDC 217117: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.28098287.v1
title: Supplementary Data for the manuscript "Is male sterility of <i>Drosophila mojavensis</i> x <i> </i><i>D. arizonae</i> hybrids caused by gene movements in the Y chromosome?" (T. Vanderlinde et al.)

description: This Figshare record contains all data and scripts associated with our investigation of Y chromosome gene content in <i>Drosophila arizonae</i>, <i>D. mojavensis</i>, and related species. The files here support the findings described in our manuscript, where we explored the hypothesis that an essential male fertility gene might have moved from the Y chromosome to an autosome in the <i>D. arizonae</i> lineage.1. Annotation and Alignment of GI18320 Orthologs<b>File:</b> <code>G18320_repletagrp_cds6.fasta</code>Annotated coding sequences (CDS) of the GI18320 ortholog in <i>D. navojoa</i>, <i>D. adrichi</i>, <i>D. buzzatii</i>, and <i>D. repleta</i>. These species provide a comparative framework increasingly distant from our focal species <i>D. arizonae</i> and <i>D. mojavensis</i>.<b>File:</b> <code>GI18320_repletagrp_cds8_aln.fas</code>Alignment of the above CDS, with poorly aligned regions removed. Two gaps were introduced in the <i>D. mojavensis</i> autosomal pseudogene to correct the reading frame.2. HyPhy Analysis Script<b>File:</b> <code>GI18320_v11.bf</code>Implements dN/dS estimation and hypothesis testing using HyPhy (Kosakovsky Pond et al. 2005; Windows version 2.2.4). The best-fitting substitution model (HKY85, coded as <code>010010</code>) was automatically selected by HyPhy.3. Corrected Reference TranscriptomesWe provide four corrected reference transcriptomes for each species—<i>D. mojavensis</i>, <i>D. arizonae</i>, <i>D. navojoa</i>, and <i>D. virilis</i>:<b>Files:</b><code>moj_all_cds_corrected.fasta</code><code>ari_all_cds_corrected.fasta</code><code>nav_all_cds_corrected.fasta</code><code>vir_all_cds_corrected.fasta</code>These transcriptomes had all sequences corresponding to the 14 annotated Y-linked genes removed using <code>cd-hit-est-2d</code> (Li and Godzik 2006). The correctly annotated Y-linked genes were then reintroduced, and RSEM was run to quantify expression.4. Y-linked Sequences<b>File:</b> <code>Y-linkedgenes_CDS_moj_ari_nav</code>Includes the Y-linked sequences for <i>D. mojavensis</i>, <i>D. arizonae</i>, and <i>D. navojoa</i>, used to confirm the presence or copy number of these genes across species.5. YGS resultsWe provide the results generated by the YGS (Y-chromosome Genome Scan) procedure for each of the three focal species:<code>moj_YGS_output.txt</code><code>navojoa_YGS_output.txt</code><code>ari_YGS_output.txt</code>These datasets and scripts enable the replication of our analyses on Y-linked genes, their copy numbers, and their evolutionary dynamics in the <i>D. repleta</i> species group. For additional details on methodology, please refer to the Methods section of our manuscript.<br><br>
DOI: 10.5517/cc78xt6
title: CCDC 217118: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78xv7
title: CCDC 217119: Experimental Crystal Structure Determination

description: Related Article: T.K.Venkatachalam, E.Sudbeck, F.M.Uckun|2004|J.Mol.Struct.|687|45|doi:10.1016/j.molstruc.2003.08.022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8724p
title: CCDC 245121: Experimental Crystal Structure Determination

description: Related Article: S.V.Ivanov, S.M.Miller, O.P.Anderson, S.H.Strauss|2004|Cryst.Growth Des.|4|249|doi:10.1021/cg034230b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8fzg3
title: CCDC 251765: Experimental Crystal Structure Determination

description: Related Article: J.Dalmaris, J.R.Hanson, P.B.Hitchcock, I.Kiran|2003|J.Chem.Res.|2003|150|doi:10.3184/030823403103173309
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc878mc
title: CCDC 245322: Experimental Crystal Structure Determination

description: Related Article: Xiandong Yang, J.D.Ranford, J.J.Vittal|2004|Cryst.Growth Des.|4|781|doi:10.1021/cg0499717
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc878nd
title: CCDC 245323: Experimental Crystal Structure Determination

description: Related Article: Xiandong Yang, J.D.Ranford, J.J.Vittal|2004|Cryst.Growth Des.|4|781|doi:10.1021/cg0499717
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc878pf
title: CCDC 245324: Experimental Crystal Structure Determination

description: Related Article: Xiandong Yang, J.D.Ranford, J.J.Vittal|2004|Cryst.Growth Des.|4|781|doi:10.1021/cg0499717
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.