cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6274961
title: frknrnn/DeepCAN: Initial Release

description: Precise and quick monitoring of key cytometric features such as cell count, cell size, cell morphology and DNA content is crucial for life research and development. Cy- tometry is important for numerous applications in biotechnology, medical sciences, and cell culture research laboratories. Flow cytometry that relies on aligning cell flow and their characterization by optical or electrical detection has been the dom- inant cytometry approach for high throughput applications. Recent advances in digital microscopy revealed image cytometry as a viable alternative that can lead to simpler, more compact and less expensive solutions. Traditionally, image cytome- try relies on the use of a hemocytometer accompanied with visual inspection of an operator under the microscope. This approach is prone to error due to subjective decisions of the operator. Machine learning approaches have recently emerged as powerful tools enabling quick and highly accurate image cytometric analysis that are easily generalizable to different cell types. Here, we demonstrate a modular deep learning system (DeepCAN) that provides a complete solution for automated cell counting and viability analysis. DeepCAN employs three different neural network blocks called Parallel Segmenter, Cluster CNN, and Viability CNN that are trained for initial segmentation, cluster separation, and cell viability analysis, respectively. Parallel Segmenter and Cluster CNN blocks achieve highly accurate segmentation of individual cells while Viability CNN block performs viability classification A modified U-Net network, a well-known deep neural network model for bio-image analysis, is used in Parallel Segmenter while LeNet-5 architecture and itss modifid versions are used for Cluster CNN and Viability CNN, respectively. We trained the Parallel Seg- menter using 15 images of A2780 cells and 5 images of yeasts cells containing 14742 individual cell images. Similarly, 6101 and 5900 A2480 cell images were employed for training of Cluster CNN and Viability CNN models. 2514 individual A2780 cell images were used to test the overall segmentation performance of Parallel Segmenter combined with Cluster CNN, revealing a high precision of 96.52%. Overall cell count- ing/viability analysis performance of DeepCAN was tested with A2780 (2514 cells), A549 (601 cells), Colo (356 cells), and MDA-MB-231 (857 cells) cell images reveal- ing high counting/viability accuracies of 93.82 %/95.93 %, 92.18 %/97.90 %, and 85.32 %/97.40 %, respectively.
DOI: 10.11583/dtu.12866000.v1
title: Greenland Surface elevation change 1992 to present v2.0

description: The Surface Elevation Change (SEC) version 2 product contains two different types of data files:1) quicklook.png of the surface elevation changes.2) NetCDF files containing the surface elevation changes and their associated errors<br>Data are based on ESAs Ku-band radar satellite level-2 data products. Given the longer time span of operation of the satellites, the data are provided at a five-year mean.<br>The algorithms used to derive the product are explained in detail in Simonsen and Sørensen (2017), and Sørensen et al. (2018). The approach used here is the most optimal combination of the XO-, TR-, and PF-algorithm; the data are corrected for both backscatter and leading-edge width, and solved at 1 km grid resolution and averaged in the post-processing to 5 km grid resolution by ordinary kriging. <br>Reference:Simonsen, S. B., and Sørensen, L. S. (2017) ‘Implications of changing scattering properties on Greenland ice sheet volume change from Cryosat-2 altimetry’, Remote Sensing of Environment. Elsevier Inc., 190, pp. 207–216. DOI: 10.1016/j.rse.2016.12.012.<br>Sørensen, L. S., Simonsen, S. B., Forsberg, R., Khvorostovsky, K., Meister, R., and Engdahl, M. E. (2018) '25 years of elevation changes of the Greenland Ice Sheet from ERS, Envisat, and CryoSat-2 radar altimetry', Earth and Planetary Science Letters, 495, pp. 234-241 DOI: 10.1016/j.epsl.2018.05.015
DOI: 10.48370/ofd/f5jdog
title: Phleogena faginea (Fr.: Fr.) Link, 4538

description: Fungarium Makromycetes
DOI: 10.5281/zenodo.6261924
title: Inputdata for CESM2.3x compset F2000climo with spectral-element dynamical core.and refined grid over Greenland

description: Input data necessary to run a CESM2.3x case for the F2000 compset and a variable resolution mesh with a 1 degree global horizontal resolution grid and regional refinement of 1/4 degree resolution over the broader Arctic region plus an additionally 1/8 degree refinement over Greenland
DOI: 10.5281/zenodo.6261923
title: Inputdata for CESM2.3x compset F2000climo with spectral-element dynamical core.and refined grid over Greenland

description: Input data necessary to run a CESM2.3x case for the F2000 compset and a variable resolution mesh with a 1 degree global horizontal resolution grid and regional refinement of 1/4 degree resolution over the broader Arctic region plus an additionally 1/8 degree refinement over Greenland
DOI: 10.13016/t8uf-k7nx
title: Bilaterally Reduced Rolandic Beta Band Activity in Minor Stroke Patients

description: Stroke patients with hemiparesis display decreased beta band (13–25Hz) rolandic activity, correlating to impaired motor function. However, clinically, patients without significant weakness, with small lesions far from sensorimotor cortex, exhibit bilateral decreased motor dexterity and slowed reaction times. We investigate whether these minor stroke patients also display abnormal beta band activity. Magnetoencephalographic (MEG) data were collected from nine minor stroke patients (NIHSS &lt; 4) without significant hemiparesis, at ~1 and ~6 months postinfarct, and eight age-similar controls. Rolandic relative beta power during matching tasks and resting state, and Beta Event Related (De)Synchronization (ERD/ERS) during button press responses were analyzed. Regardless of lesion location, patients had significantly reduced relative beta power and ERS compared to controls. abnormalities persisted over visits, and were present in both ipsi- and contra-lesional hemispheres, consistent with bilateral impairments in motor dexterity and speed. Minor stroke patients without severe weakness display reduced rolandic beta band activity in both hemispheres, which may be linked to bilaterally impaired dexterity and processing speed, implicating global connectivity dysfunction affecting sensorimotor cortex independent of lesion location. Findings not only illustrate global network disruption after minor stroke, but suggest rolandic beta band activity may be a potential biomarker and treatment target, even for minor stroke patients with small lesions far from sensorimotor areas.
DOI: 10.48370/ofd/2c0hlk
title: Pholiota squarrosa (Vahl) P. Kumm., 2064

description: Fungarium Makromycetes
DOI: 10.5281/zenodo.6274956
title: Synthetic Studies towards Pyrido[1,2-a]azepine Stemona Alkaloids

description: The carbon skeleton of the <em>Stemona</em> alkaloids stemokerrin and cochinchistemonine was assembled from three building blocks (a piperidine, a furan, and a tetronate). Key steps linking the fragments included a Stille cross-coupling (piperidine/furan) and an aldol type addition of a tetronate. The furan served as a latent 1,4-difunctional compound which was converted to a gamma-hydroxylactone by a type II photooxygenation. Attempts to construct the C12-C13 double bond of stemokerrin by a late stage oxidation or by an elimination remained unsuccessful. The non-natural products dihydrostemokerrin and furostemokerrin were obtained instead.
DOI: 10.5281/zenodo.6274955
title: Synthetic Studies towards Pyrido[1,2-a]azepine Stemona Alkaloids

description: The carbon skeleton of the <em>Stemona</em> alkaloids stemokerrin and cochinchistemonine was assembled from three building blocks (a piperidine, a furan, and a tetronate). Key steps linking the fragments included a Stille cross-coupling (piperidine/furan) and an aldol type addition of a tetronate. The furan served as a latent 1,4-difunctional compound which was converted to a gamma-hydroxylactone by a type II photooxygenation. Attempts to construct the C12-C13 double bond of stemokerrin by a late stage oxidation or by an elimination remained unsuccessful. The non-natural products dihydrostemokerrin and furostemokerrin were obtained instead.
DOI: 10.15151/esrf-es-642714981
title: CryoEM-BAG France: Structural Biology using Cryo-EM in France

description: This proposal gathers Principal investigators from French Institutions that use cryo-EM to unravel the molecular mechanisms associated with various biological processes. Scientists belong to 8 centres that currently use Cryo-EM and have already used ESRF CM01 beamline. All the PIs in this application have submitted application in the two previous Rolling access applications and have or will soon collect data. Most of them will thus need Beam-time prior to august 2020. According to our listing, 14 projects are ready for data collection at ESRF CM01. Projects include the study of bacterial secretion systems (Bordeaux, Lyon, Paris), viruses and their infection mechanisms (Marseille), translation and its control (Bordeaux, Toulouse, Paris, Strasbourg), transcription (Strasbourg, Paris) and Macromolecular transport (Bordeaux, Lyon, Strasbourg).
DOI: 10.5281/zenodo.6275360
title: data set related to article Treatment with Methylphenidate Improves Affective but Not Cognitive Empathy in Youths with Attention-Deficit/Hyperactivity Disorder

description: This record contains raw data related to article Treatment with Methylphenidate Improves Affective but Not Cognitive Empathy in Youths with Attention-Deficit/Hyperactivity Disorder
DOI: 10.5281/zenodo.6275359
title: data set related to article Treatment with Methylphenidate Improves Affective but Not Cognitive Empathy in Youths with Attention-Deficit/Hyperactivity Disorder

description: This record contains raw data related to article Treatment with Methylphenidate Improves Affective but Not Cognitive Empathy in Youths with Attention-Deficit/Hyperactivity Disorder
DOI: 10.5281/zenodo.6190270
title: Mixture effects in alkane/cycloalkane hydroconversion over Pt/HUSY : carbon number impact

description: This repository includes characterization data (H<sub>2</sub>-O<sub>2</sub> titration and N<sub>2</sub> adsorption t-plot) associated with the publication: N.Korica, A.Ben Hassine, H.Dao Thi, L.Bergaoui, K.Van Geem, P.S.F.Mendes, J.De Clercq, J.W.Thybaut “Mixture effects in alkane/cycloalkane hydroconversion over Pt/HUSY : carbon number impact”, submitted to Fuel journal in December 2021. The impact of carbon number of reacting alkanes and cycloalkanes on mixture effects in hydroconversion over Pt/HUSY has been studied by experiments performed on high-throughput setup over Pt/HUSY catalyst with three different Pt loadings and HUSY zeolite with Si/Al molar ratio of 6. The dispersion of platinum over HUSY zeolite was determined by H<sub>2</sub>-O<sub>2</sub> titration, while the specific surface area was determined by t-plot N<sub>2</sub> adsorption. These data are classified based on the platinum loading and the characterization method. 0.3 wt%Pt (H2-O2 titration) : The dispersion of 0.3 wt%Pt/HUSY 0.3 wt%Pt (N2 ads t-plot) : The specific surface area of 0.3 wt%Pt/HUSY 0.1 wt%Pt (H2-O2 titration) : The dispersion of 0.1 wt%Pt/HUSY 0.1 wt%Pt (N2 ads t-plot) : The specific surface area of 0.1 wt%Pt/HUSY 0.07 wt%Pt (H2-O2 titration) : The dispersion of 0.07 wt%Pt/HUSY 0.07 wt%Pt (N2 ads t-plot) : The specific surface area of 0.07 wt%Pt/HUSY
DOI: 10.5281/zenodo.6190269
title: Mixture effects in alkane/cycloalkane hydroconversion over Pt/HUSY : carbon number impact

description: This repository includes characterization data (H<sub>2</sub>-O<sub>2</sub> titration and N<sub>2</sub> adsorption t-plot) associated with the publication: N.Korica, A.Ben Hassine, H.Dao Thi, L.Bergaoui, K.Van Geem, P.S.F.Mendes, J.De Clercq, J.W.Thybaut “Mixture effects in alkane/cycloalkane hydroconversion over Pt/HUSY : carbon number impact”, submitted to Fuel journal in December 2021. The impact of carbon number of reacting alkanes and cycloalkanes on mixture effects in hydroconversion over Pt/HUSY has been studied by experiments performed on high-throughput setup over Pt/HUSY catalyst with three different Pt loadings and HUSY zeolite with Si/Al molar ratio of 6. The dispersion of platinum over HUSY zeolite was determined by H<sub>2</sub>-O<sub>2</sub> titration, while the specific surface area was determined by t-plot N<sub>2</sub> adsorption. These data are classified based on the platinum loading and the characterization method. 0.3 wt%Pt (H2-O2 titration) : The dispersion of 0.3 wt%Pt/HUSY 0.3 wt%Pt (N2 ads t-plot) : The specific surface area of 0.3 wt%Pt/HUSY 0.1 wt%Pt (H2-O2 titration) : The dispersion of 0.1 wt%Pt/HUSY 0.1 wt%Pt (N2 ads t-plot) : The specific surface area of 0.1 wt%Pt/HUSY 0.07 wt%Pt (H2-O2 titration) : The dispersion of 0.07 wt%Pt/HUSY 0.07 wt%Pt (N2 ads t-plot) : The specific surface area of 0.07 wt%Pt/HUSY
DOI: 10.48370/ofd/daacko
title: Phyllotopsis nidulans (Pers.) Singer, 4571

description: Fungarium Makromycetes
DOI: 10.6084/m9.figshare.19235763
title: Supplementary Material for: Comparison of Morphological and Histological Characteristics of Human and Sheep: Sheep as a Potential Model for Testing Midurethral Slings in vivo

description: <b><i>Introduction:</i></b> The sheep was evaluated as a potential model for preclinical evaluation of urethral slings in vivo based on: (1) anatomical measurements of the sheep vagina and (2) histological tissue integration and host response to polypropylene (PP) slings. <b><i>Methods:</i></b> Eight female, multiparous sheep were utilized. Three of 8 animals underwent surgery mimicking human tension-free vaginal tape protocols for midurethral slings and were euthanized at 6 months. The following measurements were obtained: vaginal length, maximum vaginal width with retraction, symphysis pubis length, and distance from the pubic bone to incision. Explanted sling samples from sheep and human were stained with hematoxylin and eosin for host reaction assessment. <b><i>Results:</i></b> Geometric measurements were similar between humans and sheep. Sheep vaginal anatomy allowed sling placement similar to procedures in human surgeries, and all sheep recovered without problems. Comparative histology between the sheep and human indicated similar host reaction and collagen deposition around implants, confirming suitability of the sheep model for biomaterial response assessment. <b><i>Conclusion:</i></b> Sheep vaginal length is comparable to humans. Tissue integration and host response to PP slings showed chronic inflammation with rich collagen deposition around the material in both sheep and human specimens, highlighting the sheep as a potential animal model for preclinical testing of midurethral slings.
DOI: 10.48370/ofd/zj6yvn
title: Phyllotopsis nidulans (Pers.) Singer, 1060

description: Fungarium Makromycetes
DOI: 10.6084/m9.figshare.19235769
title: ORJNL.dta

description: this is aggregated japanese biletarel international trade data.
DOI: 10.6084/m9.figshare.19235769.v2
title: ORJNL.dta

description: this is aggregated japanese biletarel international trade data.
DOI: 10.6084/m9.figshare.19235769.v1
title: ORJNL.dta

description: this is aggregated japanese biletarel international trade data.
DOI: 10.6084/m9.figshare.19102271
title: Environmental DNA of insects and springtails from caves reveals complex processes of eDNA transfer in soils

description: Subterranean environments host a substantial amount of biodiversity, however assessing the distribution of species living underground is still extremely challenging. Environmental DNA (eDNA) metabarcoding is a powerful tool to estimate biodiversity in poorly known environments, and has excellent performance for soil organisms. Here we tested 1) whether eDNA metabarcoding from cave soils allows to successfully detect springtails (Hexapoda: Collembola) and insects (Hexapoda: Insecta); 2) whether eDNA mostly represents autochthonous (cave-dwelling) organisms, or it also incorporates information from species living in surface environments; 3) if eDNA detection probability changes across taxa with different ecology. eDNA metabarcoding analyses detected a large number of molecular operational taxonomic units (MOTUs) of both insects and springtails. For springtails, detection probability was high, with a substantial proportion of hypogean species, suggesting that eDNA provides good information on the distribution of these organisms in caves. Conversely, for insects most of MOTUs represented taxa living outside caves, and the majority of eDNA reads were from MOTUs living in freshwater environments (Ephemeroptera, Plecoptera and Trichoptera). The eDNA of freshwater insects was particularly abundant in deep sectors of caves, far from the entrance. Furthermore, average detection probability of insects was significantly lower than the one of springtails. This suggests that cave soils act as "conveyer belts of biodiversity information", possibly because percolating water lead to the accumulation of eDNA of organisms living in nearby areas. Cave soils hold a complex mix of autochthonous and allochthonous DNA. eDNA provides unprecedented information on the understudied subterranean cave organisms; analyses of detection probability and occupancy can help teasing apart local eDNA from the eDNA representing spatially-integrated biodiversity for whole landscape.<br>We present the complete dataset used for this analysis.For both insects (marker Ins01) and springails (Coll01) we present the table reporting the filtered sequences, with the number of reads obtained for each MOTU in each PCR replicate of each sample. The table also includes the taxonomic and ecological classification of each MOTU.<br>The dataset is a excel file including 2 data sheets and one legend sheet<br><br><br><br>
DOI: 10.6084/m9.figshare.19102271.v1
title: Environmental DNA of insects and springtails from caves reveals complex processes of eDNA transfer in soils

description: Subterranean environments host a substantial amount of biodiversity, however assessing the distribution of species living underground is still extremely challenging. Environmental DNA (eDNA) metabarcoding is a powerful tool to estimate biodiversity in poorly known environments, and has excellent performance for soil organisms. Here we tested 1) whether eDNA metabarcoding from cave soils allows to successfully detect springtails (Hexapoda: Collembola) and insects (Hexapoda: Insecta); 2) whether eDNA mostly represents autochthonous (cave-dwelling) organisms, or it also incorporates information from species living in surface environments; 3) if eDNA detection probability changes across taxa with different ecology. eDNA metabarcoding analyses detected a large number of molecular operational taxonomic units (MOTUs) of both insects and springtails. For springtails, detection probability was high, with a substantial proportion of hypogean species, suggesting that eDNA provides good information on the distribution of these organisms in caves. Conversely, for insects most of MOTUs represented taxa living outside caves, and the majority of eDNA reads were from MOTUs living in freshwater environments (Ephemeroptera, Plecoptera and Trichoptera). The eDNA of freshwater insects was particularly abundant in deep sectors of caves, far from the entrance. Furthermore, average detection probability of insects was significantly lower than the one of springtails. This suggests that cave soils act as "conveyer belts of biodiversity information", possibly because percolating water lead to the accumulation of eDNA of organisms living in nearby areas. Cave soils hold a complex mix of autochthonous and allochthonous DNA. eDNA provides unprecedented information on the understudied subterranean cave organisms; analyses of detection probability and occupancy can help teasing apart local eDNA from the eDNA representing spatially-integrated biodiversity for whole landscape.<br>We present the complete dataset used for this analysis.For both insects (marker Ins01) and springails (Coll01) we present the table reporting the filtered sequences, with the number of reads obtained for each MOTU in each PCR replicate of each sample. The table also includes the taxonomic and ecological classification of each MOTU.<br>The dataset is a excel file including 2 data sheets and one legend sheet<br><br><br><br>
DOI: 10.48370/ofd/xs5ocf
title: Phyllotopsis nidulans (Pers.) Singer, 1140

description: Fungarium Makromycetes
DOI: 10.48370/ofd/p7hcjn
title: Phyllotopsis nidulans (Pers.) Singer, 2999

description: Fungarium Makromycetes
DOI: 10.48370/ofd/ff6quk
title: Piloderma byssinum (P. Karst.) Jülich, 713

description: Fungarium Makromycetes
DOI: 10.25405/data.ncl.15506019.v6
title: Data from BIONICS research embankment

description: The BIONICS embankment, located in Northumberland (UK), is 6 m high, 90 m long and orientated approximately east-west with a 1:2 slope, representative of typical UK infrastructure. The embankment comprises four panels with the central panels constructed to Highways England specifications (termed ‘well-compacted’) and two outermost sections built with reduced compaction to represent poorly constructed/heterogeneous rail embankments.<br>These dataset forms a complete repository of all data collected at BIONICS embankment. The historical hydrological data was recorded from November 2008 to January 2018. And the new data was recorded from August 2021, with ongoing monitoring and recording. Datafiles are provided for both hydrological data and also weather station data. Please see the readme files for each dataset details.
DOI: 10.48370/ofd/hay8h8
title: Plicatura crispa (Pers.) Rea, 97

description: Fungarium Makromycetes
DOI: 10.21227/681r-eb17
title: Chipless RFID measurement of ML predictions

description: The data are made of nine sets of measurements of four chipless RFID tags. The first two are made of 2600 measurements made at 160 centimeters (distance between the tag and the antenna) without (first) and with (second) initial background subtraction. The third set is made of 5600 measurements made in the range of 50 – 140 centimeters. The next six sets are measurements made to test models trained with the third set. All the measurements are made in the monostatic configuration.
DOI: 10.25405/data.ncl.19224735
title: Spatiotemporal Variation in Urban Wastewater Pollution Impacts on River Microbiomes and Associated Hazards in the Akaki Catchment, Addis Ababa, Ethiopia

description: This folder contains data underpinning the publication "Spatiotemporal Variation in Urban Wastewater Pollution Impacts on River Microbiomes and Associated Hazards in the Akaki Catchment, Addis Ababa, Ethiopia" published in the journal Science of the Total Environmenthttps://doi.org/10.1016/j.scitotenv.2022.153912<br><br><b> </b>
DOI: 10.25405/data.ncl.19224735.v1
title: Spatiotemporal Variation in Urban Wastewater Pollution Impacts on River Microbiomes and Associated Hazards in the Akaki Catchment, Addis Ababa, Ethiopia

description: This folder contains data underpinning the publication "Spatiotemporal Variation in Urban Wastewater Pollution Impacts on River Microbiomes and Associated Hazards in the Akaki Catchment, Addis Ababa, Ethiopia" published in the journal Science of the Total Environmenthttps://doi.org/10.1016/j.scitotenv.2022.153912<br><br><b> </b>
DOI: 10.5281/zenodo.6275993
title: data set related to article A novel multidimensional questionnaire for the assessment of emotional dysregulation in adolescents: Reactivity, Intensity, Polarity and Stability questionnaire-youth version (RIPoSt-Y)

description: This record contains raw data related to article A novel multidimensional questionnaire for the assessment of emotional dysregulation in adolescents: Reactivity, Intensity, Polarity and Stability questionnaire-youth version (RIPoSt-Y)