cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gvjr4n
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinocereus adustus"
 ]
}

 The dataset includes 127 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006555-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ctj3wc
title: Programmes d'Atlas de la biodiversité communale (ABC) - Données ANA - CEN Ariège sur les ABC

description: Jeu de données compilant les données collectées par le CEN 09 dans le cadre de divers ABC
DOI: 10.7910/dvn/fj4v4k
title: Dynamic subtype- and context-specific subcellular RNA regulation in growth cones of developing neurons of the cerebral cortex

description: Brief Description of Contents:
RNA-seq profiling of subcellular compartments of fluorescently labeled mouse callosal projection neurons (CPN) and corticothalamic projection neurons (CThPN) at two timepoints during mouse cortical development. Somata and growth cones (GC) were isolated (micro dissection; tissue dissociation; biochemical fractionation for GCs only; fluorescence-based sorting) in parallel from mouse brains at postnatal days 1 and 3. Growth cone fraction (GCF) samples were also collected post-fractionation as a baseline for comparison to GCs in order to quantify ambient RNAs. polyA+ mRNA libraries were prepared with a 1/4 volume SmartSeq v4 kit (Takara). 

Data Processing Pipeline:
1. Adapters were trimmed and low-quality reads were filtered using the TrimGalore! wrapper for Cutadapt 
2. Sequences aligning to rRNA, rodent repeat elements, 7SL or SRP (the RNA component of the signal recognition particle), or the mitochondrial genome were removed using bbsplit.sh from the BBTools suite
3. Reads were aligned to the GRCm38/mm10 genome and to the corresponding Ensembl transcriptome version 101 using STAR (version 2.7.9a) with default parameters. 
4. Transcript abundances were estimated using Salmon (version 1.7.0) alignment mode with [ –posBias –numBootstraps 100] flags set. 
5. Differential expression at the gene level was calculated using DESeq2 (version 1.26.0); gene abundances were estimated using aggregated transcript counts.
6. Due to 3'bias in the data, differential expression at the transcript level was calculated by first identifying and counting only reads overlapping with the last 250bp of each transcript, and then using DESeq2 (version 1.26.0).
DOI: 10.15468/nhnbxp
title: iHerbarium

description: iHerbarium is a website, where amateur botanists leave sets of pictures collected with gps-enabled smartphone. The pictures are then named online by experts, if the data is sufficiently qualified.
DOI: 10.15468/tmctbv
title: Mission forêt : la Langue de bœuf - Données de la quête INPN Espèces : Mission forêt, la Langue de bœuf

description: Noé vous propose, avec l'appui de la Société mycologique de France, de partir à la découverte du milieu forestier à travers ses « Missions forêt ». Partez à la recherche de la Langue de bœuf (<i>Fistulina hepatica</i> (Schaeff.) With., 1801), un champignon présent sur les troncs d’arbre reconnaissable à son chapeau en forme de console ou de langue (7 à 25 cm de large). Il est visqueux, recouvert de petites aspérités et d’une couleur rouge brique qui fonce en vieillissant. La face inférieure présente des pores de couleur crème. Vous pourrez le trouver dans les bois de plaine et de moyenne montagne ; il apprécie particulièrement les blessures d’arbres feuillus, notamment les chênes. <br>

Plus d’informations sur : <br>https://biodiversite-foret.fr/les-especes-2/champignons/langue-de-boeuf/<br>

© Bernard Dubreuil/Biosphoto
DOI: 10.15468/dl.umubet
title: Occurrence Download

description: A dataset containing 90 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.basisofrecord IN ('HUMAN_OBSERVATION', 'PRESERVED_SPECIMEN')
 AND occurrence.continent = 'EUROPE'
 AND occurrence.countrycode IN ('CY', 'GB', 'IE', 'ES', 'MT', 'GR', 'PT')
 AND occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND occurrence.occurrencestatus = 'PRESENT'
 AND occurrence.publishingorgkey IN ('90fd6680-349f-11d8-aa2d-b8a03c50a862', '32f1b389-5871-4da3-832f-9a89132520c5', 'ee45975b-3d89-42b5-ac7a-c03f47b6dcb4', '48f02f0c-5287-4b0a-bdf1-cee8f9665285', 'e37fc40e-0541-4ffa-8a4c-0426d73804e8', '392ef839-10ae-4f22-a1ee-a45e535162b4', '47eaaa43-47c7-4754-8e7a-bfaf616da4df', '925267b2-870b-409e-8a81-d044d6eb6c2f', 'c0758a16-296b-4ec3-97fd-8a057d9060f3')
 AND (CAST(occurrence.taxonkey AS INTEGER) = 7579898 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 7579898 OR CAST(occurrence.kingdomkey AS INTEGER) = 7579898 OR CAST(occurrence.phylumkey AS INTEGER) = 7579898 OR CAST(occurrence.classkey AS INTEGER) = 7579898 OR CAST(occurrence.orderkey AS INTEGER) = 7579898 OR CAST(occurrence.familykey AS INTEGER) = 7579898 OR CAST(occurrence.genuskey AS INTEGER) = 7579898 OR CAST(occurrence.specieskey AS INTEGER) = 7579898)
 AND (occurrence."year" &gt;= 1901 AND occurrence."year" &lt;= 2025)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 90 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006547-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/m5sfc6
title: Occurrences of protected species of insects in Italy

description: This dataset contains occurrence records of protected species of insects observed in Italy. 
The data were collected through a citizen science initiative involving volunteers who contributed their observations with the aim of documenting and monitoring the distribution of the target species throughout the country, for the requirements of Articles 11 and 17 of the Habitats Directive.
This initiative was developed, launched and initially funded through the LIFE11 NAT/IT/000252 project, titled “Monitoring of insects with public participation” (MIPP) which ran from 2012 to 2017. After the conclusion of the MIPP project, the citizen science initiative continued under national agreements, was rebranded as "InNat" and was concluded in 2024.
The target species were 30 species of protected insects.
The observations were made by volunteers and each record includes the date and location of the observation, the species identified and a photograph of the insect (with a few exceptions where records lack photos). 
The dataset contains 5975 records.
The data gathered provided a significative improvement in the knowedge of the species distribution, information on the ecology of the target species at national level and insights for conservation actions (Campanaro et al. 2017, Zapponi et al. 2017, Redolfi De Zan et al. 2023).
DOI: 10.15468/dl.pvv4jy
title: Occurrence Download

description: A dataset containing 32372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((12.72025 41.19682,13.40719 41.19682,13.40719 41.66202,12.72025 41.66202,12.72025 41.19682))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 32372 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006525-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqu2zh
title: Occurrence Download

description: A dataset listing the 4096705 species recorded in GBIF matching the query:
{
 "OccurrenceStatus" : [
 "is Present"
 ]
}

 The dataset's 4096705 records were derived from 77497 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006542-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbpe6d
title: Occurrence Download

description: A dataset containing 313057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus petraea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 313057 records from 1566 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006522-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdul7w
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001913-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pefg2t
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000000-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.waruer
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001903-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wteth7
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001898-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.icj1e7
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000002-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l1kbt4
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002003-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kiaxez
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001903-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kyeufq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006466-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79wkbb
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001883-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vs77dq
title: Occurrence Download

description: A dataset containing 5210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "Year 1950-2024"
 ]
}

 The dataset includes 5210 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071457-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cu6q6x
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001939-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxezq8
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001913-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrdxsx
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055410-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecewcd
title: Occurrence Download

description: A dataset containing 2071404390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2071404390 records from 35252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004592-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive163676.20251217.10
title: <i>Microbacterium</i> <i>shaanxiense</i> Peng <i>et al.</i> 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163677.20241212.9.2
title: <i>Microbacterium</i> <i>shaanxiense</i> Peng <i>et al.</i> 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163677.20251217.10
title: <i>Microbacterium</i> <i>shaanxiense</i> Peng <i>et al.</i> 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163678.20241212.9.2
title: <i>Bacillus</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163678.20251217.10
title: <i>Bacillus</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163679.20241212.9.2
title: <i>Bacillus</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163679.20251217.10
title: <i>Bacillus</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163680.20241212.9.2
title: <i>Bacillus</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163680.20251217.10
title: <i>Bacillus</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163681.20241212.9.2
title: <i>Bacillus</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163681.20251217.10
title: <i>Bacillus</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163682.20241212.9.2
title: <i>Pseudomonas</i> <i>luteola</i> Kodama <i>et al.</i> 1985

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163682.20251217.10
title: <i>Pseudomonas</i> <i>luteola</i> Kodama <i>et al.</i> 1985

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163683.20241212.9.2
title: <i>Azotobacter</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163683.20251217.10
title: <i>Azotobacter</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163684.20241212.9.2
title: <i>Hymenobacter</i> <i>terrae</i> Srinivasan <i>et al.</i> 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163684.20251217.10
title: <i>Hymenobacter</i> <i>terrae</i> Srinivasan <i>et al.</i> 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163685.20241212.9.2
title: <i>Hymenobacter</i> <i>rubidus</i> Lee <i>et al.</i> 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163685.20251217.10
title: <i>Hymenobacter</i> <i>rubidus</i> Lee <i>et al.</i> 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163686.20241212.9.2
title: <i>Citrobacter</i> <i>bitternis</i> Ko <i>et al.</i>

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163686.20251217.10
title: <i>Citrobacter</i> <i>bitternis</i> Ko <i>et al.</i>

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163687.20241212.9.2
title: <i>Kistimonas</i> <i>alittae</i> Ellis <i>et al.</i> 2019

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163687.20251217.10
title: <i>Kistimonas</i> <i>alittae</i> Ellis <i>et al.</i> 2019

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163688.20250331.9.3
title: <i>Vibrio</i> <i>injenensis</i> Paek <i>et al.</i>

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163688.20251217.10
title: <i>Vibrio</i> <i>injenensis</i> Paek <i>et al.</i>

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive163689.20250331.9.3
title: <i>Chitinophaga</i> <i>qingshengii</i> Cheng <i>et al.</i> 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.