cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5867730.v1
title: Additional file 3: Table S3. of Determinants of difficulty in activities of daily living in ambulatory patients undergoing hemodialysis

description: Univariate and multivariate logistic regression analyses on ADL difficulty. Univariate and multivariate logistic regression analyses were performed with ADL difficulty as a dependent variable and age, male sex, blood hemoglobin concentration, serum albumin concentration, comorbidity index, depression symptoms, maximum leg strength, one-leg standing time, and usual walking speed as independent variables for each level. *ADL items with higher level difficulty included “walking up two flights of stairs,” “walking 1 km,” “walking 600 m,” and “rising from the floor.” †ADL items with middle level difficulty included “walking down two flights of stairs,” “walking 300 m,” “walking up one flight of stairs,” and “sitting down on the floor.” ‡ADL items with lower level difficulty included “walking 20 m quickly,” “walking down one flight of stairs,” “walking 100 m,” and “rising from a chair.” ADL, activities of daily living; OR, odds ratio; CI, confidence interval. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5867715
title: Additional file 2: Table S2. of Determinants of difficulty in activities of daily living in ambulatory patients undergoing hemodialysis

description: Clinical characteristics, motor function, ADL dependency, and ADL difficulty of study subjects. Data are presented as mean ± standard deviation or number of subjects. *ADL items with higher level difficulty included “walking up two flights of stairs,” “walking 1 km,” “walking 600 m,” and “rising from the floor.” †ADL items with middle level difficulty included “walking down two flights of stairs,” “walking 300 m,” “walking up one flight of stairs,” and “sitting down on the floor.” ‡ADL items with lower level difficulty included “walking 20 m quickly,” “walking down one flight of stairs,” “walking 100 m,” and “rising from a chair.” BMI, body mass index: HD, hemodialysis; ADL, activities of daily living. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5867715.v1
title: Additional file 2: Table S2. of Determinants of difficulty in activities of daily living in ambulatory patients undergoing hemodialysis

description: Clinical characteristics, motor function, ADL dependency, and ADL difficulty of study subjects. Data are presented as mean ± standard deviation or number of subjects. *ADL items with higher level difficulty included “walking up two flights of stairs,” “walking 1 km,” “walking 600 m,” and “rising from the floor.” †ADL items with middle level difficulty included “walking down two flights of stairs,” “walking 300 m,” “walking up one flight of stairs,” and “sitting down on the floor.” ‡ADL items with lower level difficulty included “walking 20 m quickly,” “walking down one flight of stairs,” “walking 100 m,” and “rising from a chair.” BMI, body mass index: HD, hemodialysis; ADL, activities of daily living. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5867703
title: Additional file 1: Table S1. of Determinants of difficulty in activities of daily living in ambulatory patients undergoing hemodialysis

description: Twelve items of the questionnaire on perceived mobility difficulty for HD patients. HD, hemodialysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5867703.v1
title: Additional file 1: Table S1. of Determinants of difficulty in activities of daily living in ambulatory patients undergoing hemodialysis

description: Twelve items of the questionnaire on perceived mobility difficulty for HD patients. HD, hemodialysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5867694
title: Additional file 1: of A survey of search-based refactoring for software maintenance

description: Extra analysis of SBSM papers and a listing of literature reviews related to SBSE. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.5867694.v1
title: Additional file 1: of A survey of search-based refactoring for software maintenance

description: Extra analysis of SBSM papers and a listing of literature reviews related to SBSE. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.5867667
title: Additional file 1: of Why do endocrine profiles in elite athletes differ between sports?

description: Endocrine Profile Data from GH-2000 Project. (XLS 400 kb)
DOI: 10.6084/m9.figshare.5867667.v1
title: Additional file 1: of Why do endocrine profiles in elite athletes differ between sports?

description: Endocrine Profile Data from GH-2000 Project. (XLS 400 kb)
DOI: 10.6084/m9.figshare.5867664
title: Additional file 1: of Sleeping Beauty transposon integrates into non-TA dinucleotides

description: Supplementary tables and figures. (ZIP 3928 kb)
DOI: 10.6084/m9.figshare.5867664.v1
title: Additional file 1: of Sleeping Beauty transposon integrates into non-TA dinucleotides

description: Supplementary tables and figures. (ZIP 3928 kb)
DOI: 10.6084/m9.figshare.5867445
title: Additional file 3: of Elucidating mechanistic insights into drug action for atopic dermatitis: a systems biology approach

description: Pathway enrichment analysis for different fold change cutoffs. Table and charts of pathway enrichment analysis for different fold change cutoffs. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.5867445.v1
title: Additional file 3: of Elucidating mechanistic insights into drug action for atopic dermatitis: a systems biology approach

description: Pathway enrichment analysis for different fold change cutoffs. Table and charts of pathway enrichment analysis for different fold change cutoffs. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.5867418
title: Additional file 22: of Elucidating mechanistic insights into drug action for atopic dermatitis: a systems biology approach

description: Pathway enrichment analysis using DAVID. Tables of enriched pathways (p-value
DOI: 10.6084/m9.figshare.5867418.v1
title: Additional file 22: of Elucidating mechanistic insights into drug action for atopic dermatitis: a systems biology approach

description: Pathway enrichment analysis using DAVID. Tables of enriched pathways (p-value
DOI: 10.6084/m9.figshare.5867412
title: Additional file 9: Tables S9, S10 and S11. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of PIF values and adjusted p-values of all genes in the dataset (Table S9), RIF1 score (Table S10) and RIF2 score (Table S11). (XLSX 1975 kb)
DOI: 10.6084/m9.figshare.5867412.v1
title: Additional file 9: Tables S9, S10 and S11. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of PIF values and adjusted p-values of all genes in the dataset (Table S9), RIF1 score (Table S10) and RIF2 score (Table S11). (XLSX 1975 kb)
DOI: 10.6084/m9.figshare.5867400
title: Additional file 8: Tables S7 and S8. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Gene ontology (GO) enrichment analysis by Cytoscape of genes significantly correlated with differentially hubbed (DH) genes: negative DH genes (Table S7) and positive DH genes (Table S8). The table contains gene symbol and ENSEMBL of each DH gene, gene ontology term ID, p-value and adjusted p-value of GO enrichments, the description of each GO term and the genes present in each enriched biological process. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.5867400.v1
title: Additional file 8: Tables S7 and S8. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Gene ontology (GO) enrichment analysis by Cytoscape of genes significantly correlated with differentially hubbed (DH) genes: negative DH genes (Table S7) and positive DH genes (Table S8). The table contains gene symbol and ENSEMBL of each DH gene, gene ontology term ID, p-value and adjusted p-value of GO enrichments, the description of each GO term and the genes present in each enriched biological process. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.5867385
title: Additional file 7: Tables S5 and S6. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of genes significantly correlated with differential hubbed (DH) genes: genes correlated with positively DH genes (Table S5) and negatively DH genes (Table S6). The table contains the ENSEMBL of genes and the correlation value of each gene. (XLSX 745 kb)
DOI: 10.6084/m9.figshare.5867385.v1
title: Additional file 7: Tables S5 and S6. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of genes significantly correlated with differential hubbed (DH) genes: genes correlated with positively DH genes (Table S5) and negatively DH genes (Table S6). The table contains the ENSEMBL of genes and the correlation value of each gene. (XLSX 745 kb)
DOI: 10.6084/m9.figshare.5867370
title: Additional file 6: Tables S4. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of differential hubbing (DH) values of all genes and miRNAs used in PCIT analysis. The table contains the ENSEMBL and gene symbol of each gene. (XLSX 441 kb)
DOI: 10.6084/m9.figshare.5867370.v1
title: Additional file 6: Tables S4. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of differential hubbing (DH) values of all genes and miRNAs used in PCIT analysis. The table contains the ENSEMBL and gene symbol of each gene. (XLSX 441 kb)
DOI: 10.6084/m9.figshare.5867346
title: Additional file 1 of Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

description: Supplementary tables with descriptions. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.5867346.v1
title: Additional file 1 of Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

description: Supplementary tables with descriptions. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.5867331
title: Additional file 9: Table S6. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: Functional annotation (P value &lt; 0.05 and FDR &lt; 0.05) for differentially regulated genes specific of Sinatra fruit stored 14 days at 4ÂşC. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.5867331.v1
title: Additional file 9: Table S6. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: Functional annotation (P value &lt; 0.05 and FDR &lt; 0.05) for differentially regulated genes specific of Sinatra fruit stored 14 days at 4ÂşC. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.5867322
title: Additional file 3: Table S3. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: List of most relevant canonical pathways enriched by IPA using the miRNA’s target genes list. The table contains the name of pathway and the target genes that are present in each pathway. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5867322.v1
title: Additional file 3: Table S3. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: List of most relevant canonical pathways enriched by IPA using the miRNA’s target genes list. The table contains the name of pathway and the target genes that are present in each pathway. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5867307
title: Additional file 2: Table S2. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of gene networks constructed by IPA using the miRNA’s target genes list. The table contains the gene symbol gene symbol of all genes inside network, the number of target genes inside each network and diseases and functions that network could participate. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5867307.v1
title: Additional file 2: Table S2. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of gene networks constructed by IPA using the miRNA’s target genes list. The table contains the gene symbol gene symbol of all genes inside network, the number of target genes inside each network and diseases and functions that network could participate. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5867301
title: Additional file 3: Table S2. of A phosphoinositide map at the shoot apical meristem in Arabidopsis thaliana

description: Raw data (relative signal intensities) for individual apices. (ODS 5 kb)
DOI: 10.6084/m9.figshare.5867301.v1
title: Additional file 3: Table S2. of A phosphoinositide map at the shoot apical meristem in Arabidopsis thaliana

description: Raw data (relative signal intensities) for individual apices. (ODS 5 kb)
DOI: 10.6084/m9.figshare.5867289
title: Additional file 1: Table S1. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of DE miRNAs target genes. The table contains the Fold change (FC) of each DE miRNA and the ENSEMBL and gene symbol of their target genes. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.5867289.v1
title: Additional file 1: Table S1. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Full list of DE miRNAs target genes. The table contains the Fold change (FC) of each DE miRNA and the ENSEMBL and gene symbol of their target genes. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.5867286
title: Additional file 2: Table S1. of A phosphoinositide map at the shoot apical meristem in Arabidopsis thaliana

description: Sample size and statistical analysis. (ODS 5 kb)
DOI: 10.6084/m9.figshare.5867286.v1
title: Additional file 2: Table S1. of A phosphoinositide map at the shoot apical meristem in Arabidopsis thaliana

description: Sample size and statistical analysis. (ODS 5 kb)
DOI: 10.6084/m9.figshare.5867283
title: Additional file 6: Table S5. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: Functional annotation (P value &lt; 0.05 and FDR &lt; 0.05) for differentially regulated genes specific of Natura fruit stored 14 days at 4ÂşC. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.5867283.v1
title: Additional file 6: Table S5. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: Functional annotation (P value &lt; 0.05 and FDR &lt; 0.05) for differentially regulated genes specific of Natura fruit stored 14 days at 4ÂşC. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.5867262
title: Additional file 5:Â Table S4. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: Functional annotation (P value &lt; 0.05 and FDR &lt; 0.05) for differentially regulated genes in fresh harvest Natura respect to Sinatra fruit. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5867262.v1
title: Additional file 5:Â Table S4. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: Functional annotation (P value &lt; 0.05 and FDR &lt; 0.05) for differentially regulated genes in fresh harvest Natura respect to Sinatra fruit. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5867247
title: Additional file 4: Table S3. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: DEGs in fruit stored for 14 days at 4ºC compared to fruit stored at 20 ºC which are specific of Natura fruit (SpecificDEGsNatura Sheet). DEGs in fruit stored for 14 days at 4ºC compared to fruit stored at 20 ºC which are specific of Sinatra fruit (SpecificDEGsSinatra Sheet). DEGs in fruit stored for 14 days at 4ºC compared to fruit stored at 20 ºC and that are common to Sinatra and Natura fruit (CommonDEGs Sheet). DEGs in Natura fruit compared to Sinatra fruit before storage (DEGsNATvsSINHarvest Sheet). (XLSX 692 kb)
DOI: 10.6084/m9.figshare.5867247.v1
title: Additional file 4: Table S3. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: DEGs in fruit stored for 14 days at 4ºC compared to fruit stored at 20 ºC which are specific of Natura fruit (SpecificDEGsNatura Sheet). DEGs in fruit stored for 14 days at 4ºC compared to fruit stored at 20 ºC which are specific of Sinatra fruit (SpecificDEGsSinatra Sheet). DEGs in fruit stored for 14 days at 4ºC compared to fruit stored at 20 ºC and that are common to Sinatra and Natura fruit (CommonDEGs Sheet). DEGs in Natura fruit compared to Sinatra fruit before storage (DEGsNATvsSINHarvest Sheet). (XLSX 692 kb)
DOI: 10.6084/m9.figshare.5867244
title: Additional file 17: Tables S22, S23, S24 and S25. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules correlated with the intramuscular fat (IMF) trait: enrichment of genes from mRNA modules correlated with High IMF (Table S22) and Low IMF groups (Table S23). Gene ontology enrichment analysis by Cytoscape of target genes of hub miRNAs in modules correlated with the IMF trait: enrichment of target genes of miRNA modules correlated with High intramuscular fat (Table S24) and Low IMF groups (Table S25). The table contains module’s name, gene ontology ID, p-value and adjusted p-value of GO, the description of them and the genes present in each biological process enriched. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.5867244.v1
title: Additional file 17: Tables S22, S23, S24 and S25. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules correlated with the intramuscular fat (IMF) trait: enrichment of genes from mRNA modules correlated with High IMF (Table S22) and Low IMF groups (Table S23). Gene ontology enrichment analysis by Cytoscape of target genes of hub miRNAs in modules correlated with the IMF trait: enrichment of target genes of miRNA modules correlated with High intramuscular fat (Table S24) and Low IMF groups (Table S25). The table contains module’s name, gene ontology ID, p-value and adjusted p-value of GO, the description of them and the genes present in each biological process enriched. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.5867205
title: Additional file 2: of Downstream consequences of diagnostic error in pediatric anaphylaxis

description: Study data set. (XLSX 116Â kb)
DOI: 10.6084/m9.figshare.5867205.v1
title: Additional file 2: of Downstream consequences of diagnostic error in pediatric anaphylaxis

description: Study data set. (XLSX 116Â kb)
DOI: 10.6084/m9.figshare.5867187
title: Additional file 5: of Correction to: A statistical framework for analyzing deep mutational scanning data

description: Variants with higher scores than wild-type in the presence of oseltamivir. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5867187.v1
title: Additional file 5: of Correction to: A statistical framework for analyzing deep mutational scanning data

description: Variants with higher scores than wild-type in the presence of oseltamivir. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5867181
title: Additional file 14: Tables S18, S19, S20 and S21. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules negatively correlated with miRNA modules: enrichment of genes from mRNA modules constructed in the High intramuscular fat (IMF) group (Table S18) and in the Low IMF group (Table S19). Gene ontology enrichment analysis by Cytoscape of target genes of hub miRNAs in modules negatively correlated with mRNA modules: enrichment of target genes of miRNA modules constructed in the High IMF group (Table S20) and in the Low IMF group (Table S21). The table contains the module’s name, gene ontology ID, p-value and adjusted p-value of GO, the description of them and the genes present in each biological process enriched. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.5867181.v1
title: Additional file 14: Tables S18, S19, S20 and S21. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules negatively correlated with miRNA modules: enrichment of genes from mRNA modules constructed in the High intramuscular fat (IMF) group (Table S18) and in the Low IMF group (Table S19). Gene ontology enrichment analysis by Cytoscape of target genes of hub miRNAs in modules negatively correlated with mRNA modules: enrichment of target genes of miRNA modules constructed in the High IMF group (Table S20) and in the Low IMF group (Table S21). The table contains the module’s name, gene ontology ID, p-value and adjusted p-value of GO, the description of them and the genes present in each biological process enriched. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.5867169
title: Additional file 10: Table S7. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: Functional annotation (P value &lt; 0.05 and FDR &lt; 0.05) for differentially regulated genes common in Natura and Sinatra fruit stored 14 days at 4ÂşC. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.5867169.v1
title: Additional file 10: Table S7. of Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

description: Functional annotation (P value &lt; 0.05 and FDR &lt; 0.05) for differentially regulated genes common in Natura and Sinatra fruit stored 14 days at 4ÂşC. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.5867163
title: Additional file 4: of Correction to: A statistical framework for analyzing deep mutational scanning data

description: Individually validated variants of the neuraminidase gene. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5867163.v1
title: Additional file 4: of Correction to: A statistical framework for analyzing deep mutational scanning data

description: Individually validated variants of the neuraminidase gene. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5867160
title: Additional file 13: Table S17. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: List of miRNA modules negatively correlated with mRNA modules and the GO terms associated with them in High IMF (H) and Low IMF (L) groups. The table contains the module’s name, the correlation value, p-value of correlation, number of miRNAs and mRNAs in each module and the GO term enriched for each module. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5867160.v1
title: Additional file 13: Table S17. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

description: List of miRNA modules negatively correlated with mRNA modules and the GO terms associated with them in High IMF (H) and Low IMF (L) groups. The table contains the module’s name, the correlation value, p-value of correlation, number of miRNAs and mRNAs in each module and the GO term enriched for each module. (XLSX 11 kb)