cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hu5bzn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lates angustifrons",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034868-251025141854904/datasets/export for details.
DOI: 10.15468/dl.vd4rhn
title: Occurrence Download

description: A dataset containing 2592 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.9188 23.84913, -106.7688 23.84913, -106.7688 23.99913, -106.9188 23.99913, -106.9188 23.84913))"
 ]
}

 The dataset includes 2592 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034869-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30626777
title: <b>Procedural design in digital games: Space and environment interaction in No Man's Sky</b>

description: This study analyzes the effects of procedural design on the space and environment in No Man’s Sky. The research includes 300,000 comments from Steam gaming platform users between 2016 and 2024. Player comments were analyzed using the following categories to understand players’ experiences of space and environmental interaction: “creativity and possibilities,” “environment and space design,” “environmental interaction and dynamism,” “exploration and diversity,” “game mechanics,” “procedural generation,” and “repetition and predictability.” Word frequency, thematic analysis, and sentiment analysis were used to assess players’ perceptions of procedural design. The findings suggest that despite the procedural design’s freedom of exploration and visual variety, players generally perceive the experience with neutral emotions. Repetitive designs and limitations were found to reduce player satisfaction. The impact of innovative content was limited. This study highlights the potential of procedural design to create aesthetics, functionality, and individualized experiences in game design. The procedural design should be optimized in future studies to create stronger emotional effects, and these design processes should be restructured with insights from player comments.
DOI: 10.6084/m9.figshare.30626777.v1
title: <b>Procedural design in digital games: Space and environment interaction in No Man's Sky</b>

description: This study analyzes the effects of procedural design on the space and environment in No Man’s Sky. The research includes 300,000 comments from Steam gaming platform users between 2016 and 2024. Player comments were analyzed using the following categories to understand players’ experiences of space and environmental interaction: “creativity and possibilities,” “environment and space design,” “environmental interaction and dynamism,” “exploration and diversity,” “game mechanics,” “procedural generation,” and “repetition and predictability.” Word frequency, thematic analysis, and sentiment analysis were used to assess players’ perceptions of procedural design. The findings suggest that despite the procedural design’s freedom of exploration and visual variety, players generally perceive the experience with neutral emotions. Repetitive designs and limitations were found to reduce player satisfaction. The impact of innovative content was limited. This study highlights the potential of procedural design to create aesthetics, functionality, and individualized experiences in game design. The procedural design should be optimized in future studies to create stronger emotional effects, and these design processes should be restructured with insights from player comments.
DOI: 10.5281/zenodo.17500575
title: Room Impulse Responses for MD-OMP Monte Carlo

description: Dataset Description

This dataset contains simulated room impulse responses (RIRs) and four source coordinates used in the Monte Carlo experiments (Subsection V-C) of Sound Source Localization using Multi-Dictionary Orthogonal Matching Pursuit in Reverberant Environments. It is intended for benchmarking sound source localization algorithms under different reverberation conditions using a perimeter microphone array.

Contents





File format: rir_rt0{2..8}_{1..100}.mat




Reverberation times: 0.2 s to 0.8 s (rt02–rt08)




Each file contains:





Four RIR sets: rir_s1–rir_s4




Corresponding 3-D source coordinates






Sampling rate: 16 kHz




Used in: MD-OMP_Localization



Citation

If you use this dataset, please cite the following paper:

W.-T. Lai, L. Birnie, T. Abhayapala, A. Bastine, and P. Samarasinghe,“Sound Source Localization using Multi-Dictionary Orthogonal Matching Pursuit in Reverberant Environments,”IEEE Trans. Audio, Speech, Lang. Process., 2025. [DOI]
DOI: 10.5281/zenodo.17500576
title: Room Impulse Responses for MD-OMP Monte Carlo

description: Dataset Description

This dataset contains simulated room impulse responses (RIRs) and four source coordinates used in the Monte Carlo experiments (Subsection V-C) of Sound Source Localization using Multi-Dictionary Orthogonal Matching Pursuit in Reverberant Environments. It is intended for benchmarking sound source localization algorithms under different reverberation conditions using a perimeter microphone array.

Contents





File format: rir_rt0{2..8}_{1..100}.mat




Reverberation times: 0.2 s to 0.8 s (rt02–rt08)




Each file contains:





Four RIR sets: rir_s1–rir_s4




Corresponding 3-D source coordinates






Sampling rate: 16 kHz




Used in: MD-OMP_Localization



Citation

If you use this dataset, please cite the following paper:

W.-T. Lai, L. Birnie, T. Abhayapala, A. Bastine, and P. Samarasinghe,“Sound Source Localization using Multi-Dictionary Orthogonal Matching Pursuit in Reverberant Environments,”IEEE Trans. Audio, Speech, Lang. Process., 2025. [DOI]
DOI: 10.15468/dl.wzbpac
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lates calcarifer",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034870-251025141854904/datasets/export for details.
DOI: 10.5281/zenodo.17595701
title: Processed data and resources for TE-chimeric analysis

description: This dataset contains sorted and indexed BAM files derived from RNA-seq experiments on mouse embryonic stem cells (mESCs), including 2-cell-like (2C-like) states and Zscan4-positive subpopulations. These data were generated to support TE-chimeric transcript discovery using the TEDDY pipeline.

RNA-seq reads were aligned to the **mm10 mouse genome** using STAR. The BAM files were processed using **GENCODE M7 annotation** and a corresponding **mm10 transposable element (TE) annotation file**, serving as the input for TEDDY.

**Experimental details:**

**MEF and ESC culture**  Mouse embryonic fibroblasts (MEFs) were derived from ICR mouse embryos at E13.5 and cultured in DMEM supplemented with 10% fetal bovine serum (FBS), 1 mM L-glutamine, and standard additives. R1 ESCs were cultured on mitomycin C–treated MEF feeder layers in ESC medium (DMEM, 15% FBS, 1 mM L-glutamine, 0.1 mM β-mercaptoethanol, nonessential amino acids, and 1000 U/mL LIF), under 5% CO₂ at 37°C.

**Generation of Zscan4/MERVL reporter lines**  The R1 mESC line was engineered to stably express **Zscan4-EGFP** and **MERVL-tdTomato** reporters. The Zscan4-EGFP construct was built by inserting a 2570 bp Zscan4c promoter upstream sequence into a Fugw vector lacking the CMV promoter. The MERVL::tdTomato vector was obtained from Addgene (#40281, courtesy of Samuel Pfaff). Vectors were linearized, purified, and introduced into R1 mESCs using nucleofection. Stable colonies were selected and validated based on fluorescence and previously published criteria.

These BAM files correspond to RNA-seq from sorted populations including Zscan4⁺, 2C-like, and control mESCs. Raw FASTQ data will be deposited to GEO upon manuscript acceptance.

Additionally, we provide the TE annotations structured for compatibility with the TEDDY pipeline as .rds objects:



mm10_TE_annotation.rds 

hg38_TE_annotation.rds


These data can be loaded directly using readRDS() in R.
DOI: 10.5281/zenodo.17595702
title: Processed data and resources for TE-chimeric analysis

description: This dataset contains sorted and indexed BAM files derived from RNA-seq experiments on mouse embryonic stem cells (mESCs), including 2-cell-like (2C-like) states and Zscan4-positive subpopulations. These data were generated to support TE-chimeric transcript discovery using the TEDDY pipeline.

RNA-seq reads were aligned to the **mm10 mouse genome** using STAR. The BAM files were processed using **GENCODE M7 annotation** and a corresponding **mm10 transposable element (TE) annotation file**, serving as the input for TEDDY.

**Experimental details:**

**MEF and ESC culture**  Mouse embryonic fibroblasts (MEFs) were derived from ICR mouse embryos at E13.5 and cultured in DMEM supplemented with 10% fetal bovine serum (FBS), 1 mM L-glutamine, and standard additives. R1 ESCs were cultured on mitomycin C–treated MEF feeder layers in ESC medium (DMEM, 15% FBS, 1 mM L-glutamine, 0.1 mM β-mercaptoethanol, nonessential amino acids, and 1000 U/mL LIF), under 5% CO₂ at 37°C.

**Generation of Zscan4/MERVL reporter lines**  The R1 mESC line was engineered to stably express **Zscan4-EGFP** and **MERVL-tdTomato** reporters. The Zscan4-EGFP construct was built by inserting a 2570 bp Zscan4c promoter upstream sequence into a Fugw vector lacking the CMV promoter. The MERVL::tdTomato vector was obtained from Addgene (#40281, courtesy of Samuel Pfaff). Vectors were linearized, purified, and introduced into R1 mESCs using nucleofection. Stable colonies were selected and validated based on fluorescence and previously published criteria.

These BAM files correspond to RNA-seq from sorted populations including Zscan4⁺, 2C-like, and control mESCs. Raw FASTQ data will be deposited to GEO upon manuscript acceptance.

Additionally, we provide the TE annotations structured for compatibility with the TEDDY pipeline as .rds objects:



mm10_TE_annotation.rds 

hg38_TE_annotation.rds


These data can be loaded directly using readRDS() in R.
DOI: 10.15468/dl.gwgxx9
title: Occurrence Download

description: A dataset containing 29571 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-110.5188 23.99913, -110.3688 23.99913, -110.3688 24.14913, -110.5188 24.14913, -110.5188 23.99913))"
 ]
}

 The dataset includes 29571 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034871-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k23pz6
title: Occurrence Download

description: A dataset containing 68919 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry POLYGON((75 33, 77 33, 77 35, 75 35, 75 33))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 68919 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034811-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmdur9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lates mariae",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034872-251025141854904/datasets/export for details.
DOI: 10.6084/m9.figshare.30473723
title: <b>Physiological and reproductive impacts of a ternary insecticide combination (spinetoram, novaluron and broflanilide) on </b><b><i>Spodoptera litura</i></b><b>.</b>

description: This repository contains the complete raw data supporting the manuscript titled <b>“Physiological and reproductive impacts of a ternary insecticide combination (spinetoram, novaluron, and broflanilide) on </b><i>Spodoptera litura</i><b>.”</b>The study investigates the toxic, synergistic, biochemical, and physiological effects of three insecticides (spinetoram, novaluron, and broflanilide), individually and in combination, on <i>Spodoptera litura</i>. Data correspond to toxicity bioassays, combination index calculations, biochemical assays, and biological observations.<br><br>
DOI: 10.6084/m9.figshare.30473723.v2
title: <b>Physiological and reproductive impacts of a ternary insecticide combination (spinetoram, novaluron and broflanilide) on </b><b><i>Spodoptera litura</i></b><b>.</b>

description: This repository contains the complete raw data supporting the manuscript titled <b>“Physiological and reproductive impacts of a ternary insecticide combination (spinetoram, novaluron, and broflanilide) on </b><i>Spodoptera litura</i><b>.”</b>The study investigates the toxic, synergistic, biochemical, and physiological effects of three insecticides (spinetoram, novaluron, and broflanilide), individually and in combination, on <i>Spodoptera litura</i>. Data correspond to toxicity bioassays, combination index calculations, biochemical assays, and biological observations.<br><br>
DOI: 10.6084/m9.figshare.30473723.v1
title: <b>Physiological and reproductive impacts of a ternary insecticide combination (spinetoram, novaluron and broflanilide) on </b><b><i>Spodoptera litura</i></b><b>.</b>

description: This repository contains the complete raw data supporting the manuscript titled <b>“Physiological and reproductive impacts of a ternary insecticide combination (spinetoram, novaluron, and broflanilide) on </b><i>Spodoptera litura</i><b>.”</b>The study investigates the toxic, synergistic, biochemical, and physiological effects of three insecticides (spinetoram, novaluron, and broflanilide), individually and in combination, on <i>Spodoptera litura</i>. Data correspond to toxicity bioassays, combination index calculations, biochemical assays, and biological observations.<br><br>
DOI: 10.15468/dl.23qhka
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lates niloticus",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034874-251025141854904/datasets/export for details.
DOI: 10.15468/dl.a57yq6
title: Occurrence Download

description: A dataset containing 27567 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.21424 11.1851,-74.16908 11.1851,-74.16908 11.22482,-74.21424 11.22482,-74.21424 11.1851))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 27567 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034875-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3um5v2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lavinia exilicauda",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034877-251025141854904/datasets/export for details.
DOI: 10.5281/zenodo.17614685
title: Voynich Manuscript Morphemic Decryption - Analysis Results

description: Comprehensive morphemic analysis results for the Voynich Manuscript. This dataset contains:

Morpheme inventory with frequency analysis
Word decomposition results
Statistical validation (chi-square tests)
Confidence metrics and distribution analysis
Generated using advanced computational linguistics methods and statistical validation.
description: This research applies morphemic decomposition techniques to the Voynich Manuscript text.
DOI: 10.5281/zenodo.17614684
title: Voynich Manuscript Morphemic Decryption - Analysis Results

description: Comprehensive morphemic analysis results for the Voynich Manuscript. This dataset contains:

Morpheme inventory with frequency analysis
Word decomposition results
Statistical validation (chi-square tests)
Confidence metrics and distribution analysis
Generated using advanced computational linguistics methods and statistical validation.
description: This research applies morphemic decomposition techniques to the Voynich Manuscript text.
DOI: 10.5281/zenodo.17614667
title: Single-Cell RNA-Seq Datasets of Podocytopathy in Humans and Mice: Integrating GWAS Cohorts to Explore Potential Therapeutic Targets

description: Podocyte (POD) injury is a hallmark of glomerular diseases and a central cause of albuminuria and nephrotic syndrome. Despite the rapid advancements in single-cell sequencing technologies in recent years, POD capture remains limited, resulting in a lack of comprehensive single-cell datasets related to Podocytopathies (PCPs). In this study, we collected kidney tissues from patients with five types of PCP and established two mouse models of POD injury for single-nucleus RNA sequencing (sn-RNA seq). We successfully generated single-cell resolution kidney atlases of human and mouse PCPs and, in combination with microalbuminuria-associated genome wide association study dataset, identified potential therapeutic targets linked to POD injury. These findings provide valuable resources and a solid foundation for future research on PCPs, particularly on the molecular mechanisms underlying podocyte injury.
DOI: 10.5281/zenodo.15718783
title: Single-Cell RNA-Seq Datasets of Podocytopathy in Humans and Mice: Integrating GWAS Cohorts to Explore Potential Therapeutic Targets

description: Podocyte (POD) injury is a hallmark of glomerular diseases and a central cause of albuminuria and nephrotic syndrome. Despite the rapid advancements in single-cell sequencing technologies in recent years, POD capture remains limited, resulting in a lack of comprehensive single-cell datasets related to Podocytopathies (PCPs). In this study, we collected kidney tissues from patients with five types of PCP and established two mouse models of POD injury for single-nucleus RNA sequencing (sn-RNA seq). We successfully generated single-cell resolution kidney atlases of human and mouse PCPs and, in combination with microalbuminuria-associated genome wide association study dataset, identified potential therapeutic targets linked to POD injury. These findings provide valuable resources and a solid foundation for future research on PCPs, particularly on the molecular mechanisms underlying podocyte injury.
DOI: 10.15468/dl.sj4nv9
title: Occurrence Download

description: A dataset containing 1459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.22279 11.18787,-74.1915 11.18787,-74.1915 11.20655,-74.19135 11.21069,-74.22436 11.21024,-74.22279 11.18787))",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1459 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034879-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wu33g4
title: Occurrence Download

description: A dataset containing 1400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is El género Bursera en México. Parte II",
 "Geometry POLYGON((-141.67605 5.23654,-60.32395 5.23654,-60.32395 37.76346,-141.67605 37.76346,-141.67605 5.23654))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1400 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034880-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwck56
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lefua nikkonis",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034881-251025141854904/datasets/export for details.
DOI: 10.15468/dl.ndwnvf
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leiarius marmoratus",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034882-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjtmwm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidomeda albivallis",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034883-251025141854904/datasets/export for details.
DOI: 10.15468/dl.4ysqur
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidomeda copei",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034884-251025141854904/datasets/export for details.