cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3380546
title: A Comprehensive Reliability-Based Framework for Corrosion Damage Monitoring and Repair Design of Reinforced Concrete Structures

description: Corresponding data set for Tran-SET Project No. 17STLSU03. Abstract of the final report is stated below for reference: "In this work, we developed a comprehensive framework for corrosion management of reinforced concrete (RC) structures. This framework includes critical steps of an effective approach to quantify the damage evolution as well as providing the timeframe for effective maintenance/repair strategies for corrosion assessment in RC structures. The framework included several activities including the use of indirect and direct inspection tools, theoretical development for damage prediction, experimental measurements and theoretical development of repair time based on reliability. The uniqueness of the framework is the integration of deterministic modeling of corrosion damage evolution by using mechanistic analysis with statistical modeling on corrosion of RC structures by using measurements from the field (or natural environment) and experimental testing (in the laboratory). The framework includes a simple algorithm that relies in each development and task generated from this work to monitor and estimate the status of the reinforced concrete structures and the most suitable strategy to extend the life of the system while maximizing the reliability."
description: Tran-SET Project No. 17STLSU03
DOI: 10.7910/dvn/5pnpkj/byplvz
title: 1K.out

description: :unav
DOI: 10.7910/dvn/5pnpkj/dbtkae
title: NBD4967_10K_2.json

description: :unav
DOI: 10.7910/dvn/5pnpkj/fpjabt
title: 1K.json

description: :unav
DOI: 10.7910/dvn/5pnpkj/gydlgm
title: 100K.out

description: :unav
DOI: 10.7910/dvn/5pnpkj/l8ycpi
title: zaq1xsw2tkktk-1.docx

description: :unav
DOI: 10.7910/dvn/5pnpkj/ln7loz
title: 100K.json

description: :unav
DOI: 10.7910/dvn/5pnpkj/s4p43s
title: ABCSpeedup.java

description: :unav
DOI: 10.7910/dvn/5pnpkj/ulkyds
title: NBD4967_10K_1.out

description: :unav
DOI: 10.17632/phnnnvv4gs.1
title: Data for: Age and provenance of the Chaung Magyi Group, Yewa Dome, Myanmar, based on U-Pb dating of detrital zircons

description: Results of LAICPMS dating of detrital zircons from the Chaung Magyi Formation, Myanmar.
DOI: 10.7910/dvn/5pnpkj/5eahzx
title: NBD4967_5K.out

description: :unav
DOI: 10.7910/dvn/5pnpkj/7ipstt
title: NBD4967_10K_2.out

description: :unav
DOI: 10.7910/dvn/5pnpkj/awnvz9
title: NBD4681_5K.json

description: :unav
DOI: 10.7910/dvn/5pnpkj/kexeht
title: NBD4967_10K_1.json

description: :unav
DOI: 10.7910/dvn/5pnpkj/l78zh1
title: NBD4681_5K.out

description: :unav
DOI: 10.7910/dvn/5pnpkj/mu1qan
title: NBD4681_1K.out

description: :unav
DOI: 10.7910/dvn/5pnpkj/spwbyk
title: NBD4681_1K.json

description: :unav
DOI: 10.7910/dvn/5pnpkj/uwqoyf
title: NBD4967_5K.json

description: :unav
DOI: 10.7910/dvn/ok0bug/di8bww
title: age_by_diagnosis.ttl

description: Age summary statistics for each diagnosis in the Genomic Data Commons
DOI: 10.18112/openneuro.ds002152.v1.0.0
title: DMCC13benchmark
DOI: 10.6073/pasta/487a13d217f5f61075ad9e0da0556e49
title: PIE LTER water-column nutrient and particulate transects along the Parker River Estuary, Massachusetts, 1994 - 2017.

description: Water chemistry including nutrient concentrations for various forms of N, P, C, as well as suspended sediments and light extinction coefficients, was determined from bi-annual nutrient transects along the Plum Island Sound estuary from the Parker River Dam to the mouth of the sound. Grab samples were taken at 11 sites along a 24 km transect from the dam to the mouth of the estuary. These samples have generally been collected in Spring and Fall and are done in conjunction with metabolism transects measuring dissolved oxygen levels. The Spring and Fall transects correspond to the high-flow, pre-growth season in April and the low-flow, post-growth season in September.
DOI: 10.7910/dvn/1csvbv/2kuvxz
title: errorprop.py

description: class to calculate uncertainties for two-point correlators
DOI: 10.7910/dvn/ok0bug/9s0nar
title: gdc_cases.nt.gz

description: Case data for the Genomic Data Commons
DOI: 10.7910/dvn/ok0bug/teeir2
title: compute_graph_digest.ipynb

description: Notebook to compute the graph digest of the genomic data commons source data
DOI: 10.7910/dvn/ok0bug/xudxut
title: create_summaries.ipynb

description: Generate summary statistics in RDF for groups of cases in the Genomic Data Commons
DOI: 10.7910/dvn/1csvbv/vhytns
title: stringCore.py

description: helper functions
DOI: 10.25345/c5mq0b
title: MassIVE MSV000084242 - A multiparametric extraction method for the molecular characterization of Vn96-isolated plasma extracellular vesicles
title: Extracellular vesicles (EVs) have been recognized as a rich material for the analysis of DNA, RNA, and protein biomarkers. A remaining challenge for the deployment of EV-based diagnostic and prognostic assays in liquid biopsy testing is the development of an EV isolation method that is amenable to a clinical diagnostic lab setting and is compatible with multiple types of biomarker analyses. We have previously designed a synthetic peptide, known as Vn96 (ME kit(trade marked)), which efficiently isolates EVs from multiple biofluids without the use of specialized lab equipment and in a short timeframe. Herein we describe an optimized method for Vn96-affinity based EV isolation from plasma samples and have further developed a multiparametric extraction protocol for the sequential isolation of DNA, RNA, and protein from the same plasma EV sample. We are able to isolate sufficient material by the multiparametric extraction protocol for use in downstream analyses, including ddPCR (DNA), small RNA sequencing (RNA), and mass spectrometry (protein) from a minimum volume (4 ml) of plasma. This multiparametric extraction protocol should improve the ability to analyse multiple biomarker materials from the same limited starting material, which may improve the sensitivity and specificity of liquid biopsy tests that exploit EV-based biomarkers for disease detection and monitoring.
DOI: 10.25345/c5qh2z
title: MassIVE MSV000084249 - Proteogenomic Integration Reveals Therapeutic Targets in Breast Cancer Xenografts
title: Huang K, Li S, Mertins P, Cao S, Gunawardena HP, Ruggles KV, et al., (2017) Nature Communications | 8:14864 | DOI: 10.1038/ncomms14864 | &lt;a href='http://www.nature.com/articles/ncomms14864' target='_blank'&gt;http://www.nature.com/articles/ncomms14864&lt;/a&gt;&lt;p&gt;Recent advances in mass spectrometry (MS) have enabled extensive analysis of cancer proteomes. Here, we employed quantitative proteomics to profile protein expression across 24 breast cancer patient-derived xenograft (PDX) models. Integrated proteogenomic analysis shows positive correlation between expression measurements from transcriptomic and proteomic analyses; further, gene expression-based intrinsic subtypes are largely re-capitulated using non-stromal protein markers. Proteogenomic analysis also validates a number of predicted genomic targets in multiple receptor tyrosine kinases. However, several protein/ phosphoprotein events such as overexpression of AKT proteins and ARAF, BRAF, HSP90AB1 phosphosites are not readily explainable by genomic analysis, suggesting that druggable translational and/or post-translational regulatory events may be uniquely diagnosed by MS. Drug treatment experiments targeting HER2 and components of the PI3K pathway supported proteogenomic response predictions in seven xenograft models. Our study demonstrates that MS-based proteomics can identify therapeutic targets and highlights the potential of PDX drug response evaluation to annotate MS-based pathway activities.&lt;/p&gt;&lt;p&gt;Additional supplementary data sets, provided below&lt;br&gt;Huang_Proteome_Peptide_Spectrum_Match_Results_SpectrumMill is the Proteome Peptide Spectrum Match reports exported from Spectrum Mill for each of the iTRAQ4 experiments, including the RefSeq FASTA file used for searches, and a Spectrum Mill quality metrics report.&lt;/p&gt;&lt;br/&gt; &lt;ul&gt;&lt;li&gt;Dataset imported into MassIVE from &lt;a href="https://cptac-data-portal.georgetown.edu/cptac/s/S032"&gt;https://cptac-data-portal.georgetown.edu/cptac/s/S032&lt;/a&gt; on 08/28/19&lt;/li&gt;&lt;/ul&gt;
DOI: 10.5281/zenodo.3380806
title: PERCEIVE: WP4: Spatial determinants of policy performance and synergies: Task4.4: Cohesion Policy vs Urban and Rural policies to address spatial discrepancies in EU territorial policy

description: This dataset consists of data addressing the relationship between territorial cohesion objectives and the problems perceived by citizens. In particular a comparative analysis between the case study regions will generate data useful for identifying best practices in mixing the EU policy instruments for a better achievement of regional needs. Data that will be generated via focus groups interviews among representatives of LMA (local management authorities) in 2 Polish regions: Dolnośląskie and Warmińsko-Mazurskie . Interview transcripts and report was used to address how territorial cohesion objectives match the “real problems” of regions. The focus groups were built around the following main topics: 1) governance of the Cohesion Policy projects, in order to understand how different authorities at different levels cooperate and share the responsibilities for the implementation of the Cohesion Policy; 2) level of citizen engagement, in order to understand whether a bottom-up approach is used; 3) how the media inform on the Cohesion Policy programmes, in order to appreciate the discrepancies (if any) about the aims of Cohesion Policy and its construction on the public discourse. Comparing current and past programming periods, we investigate how the policy performs in reducing the gap between territorial cohesion objectives and “real problems” defined by LMAs and citizens. Because it is project-specific data and reflects the concept and methodology of the study under PERCEIVE they are perceived as unique - similar data does not exist. Potential users are be Regional Policy’s European/National/Local policy makers and practitioners, European networks and associations looking to data on LMA opinions on cohesion policy implementation in Poland to be used in policy recommendation, studies and policy making process; next group of potential data users are researchers working on assessment of Cohesion Policy, data may be used as a source for topic-related studies, case studies, comparisons. The dataset is made up of 5 files: 2 files consist of reports from the workshops, 2 files consist in transcripts of interviews to practitioners, beneficiaries and targets of the Cohesion Policy projects in the Polish selected case‐study regions. Interviewees are asked to provide their views and perceptions on the multilevel governance system, on the communication activities of the Operational Programmes and on the effectiveness of Cohesion Policy. 1 readme file is included.
DOI: 10.5281/zenodo.3380807
title: PERCEIVE: WP4: Spatial determinants of policy performance and synergies: Task4.4: Cohesion Policy vs Urban and Rural policies to address spatial discrepancies in EU territorial policy

description: This dataset consists of data addressing the relationship between territorial cohesion objectives and the problems perceived by citizens. In particular a comparative analysis between the case study regions will generate data useful for identifying best practices in mixing the EU policy instruments for a better achievement of regional needs. Data that will be generated via focus groups interviews among representatives of LMA (local management authorities) in 2 Polish regions: Dolnośląskie and Warmińsko-Mazurskie . Interview transcripts and report was used to address how territorial cohesion objectives match the “real problems” of regions. The focus groups were built around the following main topics: 1) governance of the Cohesion Policy projects, in order to understand how different authorities at different levels cooperate and share the responsibilities for the implementation of the Cohesion Policy; 2) level of citizen engagement, in order to understand whether a bottom-up approach is used; 3) how the media inform on the Cohesion Policy programmes, in order to appreciate the discrepancies (if any) about the aims of Cohesion Policy and its construction on the public discourse. Comparing current and past programming periods, we investigate how the policy performs in reducing the gap between territorial cohesion objectives and “real problems” defined by LMAs and citizens. Because it is project-specific data and reflects the concept and methodology of the study under PERCEIVE they are perceived as unique - similar data does not exist. Potential users are be Regional Policy’s European/National/Local policy makers and practitioners, European networks and associations looking to data on LMA opinions on cohesion policy implementation in Poland to be used in policy recommendation, studies and policy making process; next group of potential data users are researchers working on assessment of Cohesion Policy, data may be used as a source for topic-related studies, case studies, comparisons. The dataset is made up of 5 files: 2 files consist of reports from the workshops, 2 files consist in transcripts of interviews to practitioners, beneficiaries and targets of the Cohesion Policy projects in the Polish selected case‐study regions. Interviewees are asked to provide their views and perceptions on the multilevel governance system, on the communication activities of the Operational Programmes and on the effectiveness of Cohesion Policy. 1 readme file is included.
DOI: 10.5061/dryad.vb68g9d/1
title: Dryad Item 10.5061/DRYAD.VB68G9D/1

description: (:tba)
DOI: 10.5061/dryad.vb68g9d/2
title: Dryad Item 10.5061/DRYAD.VB68G9D/2

description: (:tba)
DOI: 10.5061/dryad.vb68g9d/3
title: Dryad Item 10.5061/DRYAD.VB68G9D/3

description: (:tba)
DOI: 10.5061/dryad.vb68g9d/4
title: Dryad Item 10.5061/DRYAD.VB68G9D/4

description: (:tba)
DOI: 10.5061/dryad.vb68g9d/5
title: Dryad Item 10.5061/DRYAD.VB68G9D/5

description: (:tba)
DOI: 10.5281/zenodo.3380445
title: Evaluating the effect of 8 M4K compounds on the viability of DIPG patient-derived cells (SU-DIPG-VI, HSJD-DIPG-007 and SU-DIPG-IV)

description: Viability assay using Celltiter Glo kit has been chosen as the main method for evaluating the efficacy of ALK2 inhibitors on DIPG patient-derived cells due to its robustness. As a pilot experiment, 8 ALK2 inhibitors with differing potencies were chosen and evaluated in 3 DIPG patient-derived cell lines (one with wild-type ALK2 and two with mutant ALK2).
DOI: 10.5281/zenodo.3380446
title: Evaluating the effect of 8 M4K compounds on the viability of DIPG patient-derived cells (SU-DIPG-VI, HSJD-DIPG-007 and SU-DIPG-IV)

description: Viability assay using Celltiter Glo kit has been chosen as the main method for evaluating the efficacy of ALK2 inhibitors on DIPG patient-derived cells due to its robustness. As a pilot experiment, 8 ALK2 inhibitors with differing potencies were chosen and evaluated in 3 DIPG patient-derived cell lines (one with wild-type ALK2 and two with mutant ALK2).
DOI: 10.17632/8btjz6yd6r.1
title: Data for: Changes in pyramidal and granular neuron numbers in the rat hippocampus 7 days after exposure to a continuous 900-MHz electromagnetic field during early and mid-adolescence

description: All data used in the study.
DOI: 10.7910/dvn/5wpxk8/sdgsgy
title: Food Safey FINAL PCR confirmed postives RUA_KSU.tab

description: :unav
DOI: 10.7910/dvn/qlt9wm/gwjes7
title: first_and_subsequent_filings_2.txt

description: :unav
DOI: 10.7910/dvn/qlt9wm/rm770f
title: first_and_subsequent_filings_1.txt

description: :unav
DOI: 10.15129/b5a4fdb7-ddc0-431a-a3c5-d2d9a28df99f
title: Data for: "ReaxFF Molecular Dynamics Simulation Study of Nanoelectrode Lithography Oxidation Process on Silicon (100) Surface"

description: MD simulation data includes chemical compositions, Oxide thickness, RDFs of oxide film, number of Oxygen atoms along the Z axis in the oxide film, Oxide thickness for the variation of efield, Oxide thickness for the variation of RH.
DOI: 10.17632/467jx6v8ph.1
title: Data for: Revisiting the Argus Pulsejet Engine of V-1 Buzz Bombs: An Experimental Investigation of the First Mass-produced Pressure Gain Combustion Device

description: The two videos were taken at 1000 fps using two time-synced Phantom v1610 cameras.
DOI: 10.5061/dryad.141jn7c/1
title: Dryad Item 10.5061/DRYAD.141JN7C/1

description: (:tba)
DOI: 10.5281/zenodo.3380867
title: NUS Republican China Weather Database

description: This project compiled 463,530 instrumental observations of daily temperature, precipitation, and sunshine at up to 319 stations in China between 1912-51. The principal sources are monthly reports of the Institute of Meteorology, Nanjing, observatories in Japanese-occupied Manchuria, and the Japanese Army in North China. Gross errors, rounding errors, and inhomogeneities are identified. The new dataset is temporally and spatially consistent with existing datasets of monthly temperature, but reports higher precipitation and sunshine. Please refer to the readme.txt in the zip file for terms of use and description of individual files in the dataset. Please ensure the related paper is cited appropriately when reusing this dataset: Png Paak Liang Ivan, Chen Yeh-Ning, Chu Junhong, Feng Yikang, Lin Kuanhui Elaine, Tseng Wan-Ling (in press). Temperature, Precipitation, and Sunshine Across China, 1912-51: A New Daily Instrumental Dataset. Geoscience Data Journal.
description: THE AUTHORS SHALL NOT BE RESPONSIBLE OR LIABLE TO YOU OR ANY THIRD PARTY FOR ANY LOSS OR DAMAGE OF ANY SORT INCURRED BY YOU OR ANY THIRD PARTY IN CONNECTION WITH THE USE OF THE DATASET BY YOU OR ANY THIRD PARTY. The authors also shall not be responsible or liable for the accuracy, usefulness or availability of any data in the Dataset. Due to errors in typesetting and digitization, biases in recording, rounding, and inhomogeneities, the data should be interpreted with caution. When using this data, please cite the related paper and also the dataset. You may use the dataset only if you agree with the terms of use.
description: {"references": ["Png Paak Liang Ivan, Chen Yeh-Ning, Chu Junhong, Feng Yikang, Lin Kuanhui Elaine, Tseng Wan-Ling (in press).\u00a0 Temperature, Precipitation, and Sunshine Across China, 1912-51: A New Daily Instrumental Dataset. Geoscience Data Journal."]}
DOI: 10.5281/zenodo.3380868
title: NUS Republican China Weather Database

description: Systematic data on Chinese weather prior to 1949 is very sparse. Such data is important to better understand both long-term regional climate variability and the social and economic consequences of weather shocks. Here, we compile 463,025 instrumental observations of daily temperature, precipitation, and sunshine at up to 330 sites in China during the Nationalist era, 1912-49. The principal sources are monthly reports of the Institute of Meteorology, Nanjing, North China Meteorological Section of the Japanese Army, and observatories in Japanese-occupied Manchuria. This new dataset provides a valuable dataset for scientific and academic research. Variable List<br> A. Name: station<br> Description: Station B. Name: author<br> Description: Author C. Name: source<br> Description: Source D. Name: archive<br> Description: Archive E. Name: year<br> Description: Year F. Name: month<br> Description: Month G. Name: day<br> Description: Day H. Name: tmin<br> Description: Daily low temperature I. Name: tmax<br> Description: Daily high temperature J. Name: prec<br> Description: Daily precipitation K. Name: ssd<br> Description: Daily sunshine hours L. Name: archive<br> Description: Archive holding source M. Name: latitude<br> Description: Latitude N. Name: longitude<br> Description: Longitude O. Name: elevation<br> Description: Elevation (metres) P. Name: minmax<br> Description: Minimum temperature exceeds maximum<br> <br> Q. Name: tmax_jump<br> Description: Jump in maximum temperature R. Name: tmin_jump <br> Description: Jump in minimum temperature S. Name: prec_jump <br> Description: Jump in precipitation R. Name: tmin_jump <br> Description: Jump in sunshine hours T. Name: tmax_hmm<br> Description: Maximum temperature corrected for rounding U. Name: tmin_hmm <br> Description: Minimum temperature corrected for rounding V. Name: prec_hmm<br> Description: Precipitation corrected for rounding W. Name: tmin_hmm <br> Description: Sunshine hours corrected for rounding X. Name: tmax_bp<br> Description: Break point in maximum temperature Y. Name: tmin_bp <br> Description: Break point in minimum temperature Z. Name: prec_bp <br> Description: Break point in precipitation AA. Name: tmin_bp <br> Description: Break point in sunshine hours
DOI: 10.5061/dryad.h3r3s0r/1
title: Dryad Item 10.5061/DRYAD.H3R3S0R/1

description: (:tba)
DOI: 10.5281/zenodo.3380550
title: Sustainability-Based Long-Term Management of Bridges under Multi-Hazard Exposure

description: Corresponding data set for Tran-SET Project No. 17STOKS01. Abstract of the final report is stated below for reference: "Bridges are under deterioration due to various mechanical and environmental stressors. Hydraulic-related hazards (e.g., flood and scour), aggressive environmental conditions, and seismic events (e.g., earthquake) are recognized as the most significant threats to the safety of bridges. In traditional risk assessment methods for structures susceptible to damage due to floods and other natural hazards (e.g., corrosion and seismic events), future hazard predictions are conducted using historic return periods and climate records. However, recent increase in flood intensity in central-southern states indicate that future hazard occurrence rate may not necessarily follow past trends. Accordingly, current design, assessment, and management methodologies should adapt to these changes in order to ensure the satisfactory performance of bridges under the combined or cumulative action of hazards. This project addresses this need by presenting a framework for risk quantification and optimum management of bridges susceptible to damage due to floods, flood induced scour, and other gradual deterioration mechanism (e.g., corrosion and fatigue). Downscaled climate data, adopted from the global climate models, are employed to predict future flood hazard at a given location. Probabilistic simulation is used to quantify the time-dependent failure probability, which subsequently helps quantify the long-term sustainability through the systematic integration of economic, social, and environmental metrics associated with bridge failures. These profiles can be next used to obtain optimum interventions required to extend the service life while maintaining the structural performance above prescribed thresholds."
description: Tran-SET Project No. 17STOKS01