cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1091392.v4
title: Figures and Supplemental Files for Castro-Nallar et al. 2014

description: Supplemental files to article "Evaluation Of Genomic Tools For Molecular Epidemiology" Supplemental File 1: SRA Accession numbers for all 60 genomes contributed in this study Supplemental Figure 1: Median node ages for <em>Burkholderia pseudomallei</em> (A), <em>Brucella spp</em>. (B) Supplemental Figure 2: Phylogenies by molecular survey approach. Brucella spp. phylogenies (A) and <em>Y. pestis</em> phylogenies (B) Supplemental File 2: Datasets, Clock and non-clock phylogenies for all molecular survey approaches and species
DOI: 10.6084/m9.figshare.1091359
title: Gaussian Job Archive for C52H74N4O10Zn2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1091356
title: Data on the effects of local membrane deformation and micro-injury in osteoblasts

description: The dataset consists of the following: Force-distance curves collected during AFM application using Asylum MFP3D software in IgorPro 6.22 platform, labeled as “Force curves”<br>Video files of changes in fluorescence intensity of fluo-4 loaded cells during the indentation experiment labeled as “movie”<br>Examples of traces of changes in fluorescence intensity extracted from the video files using a code for Matlab 2011 A available in reference 22 in the associated article, labeled as “Mean Ca Fluorescence intensity”
DOI: 10.6084/m9.figshare.1091359.v1
title: Gaussian Job Archive for C52H74N4O10Zn2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1091365.v1
title: Latitudinal gradient data

description: The data presented in the following two sheets ("Coenagrion puella" and "Pyrrhosoma nymphula") relate to individuals of <em>Coenagrion puella</em> and <em>Pyrrhosoma nymphula</em> that were collected in 2007 at a variety of sites across the UK. Details of methods, etc, can be found in the linked publication. Also, all specimens have been preserved in 95% ethanol since the project and can be accessed if somebody is interested in the population genetics of the system.
DOI: 10.6084/m9.figshare.1091356.v1
title: Data on the effects of local membrane deformation and micro-injury in osteoblasts

description: The dataset consists of the following: Force-distance curves collected during AFM application using Asylum MFP3D software in IgorPro 6.22 platform, labeled as “Force curves”<br>Video files of changes in fluorescence intensity of fluo-4 loaded cells during the indentation experiment labeled as “movie”<br>Examples of traces of changes in fluorescence intensity extracted from the video files using a code for Matlab 2011 A available in reference 22 in the associated article, labeled as “Mean Ca Fluorescence intensity”
DOI: 10.6084/m9.figshare.1090727
title: Bridging developmental boundaries: lifelong dietary patterns modulate life histories in a parthenogenetic insect

description: Data to accompany PLoS ONE manuscript.
DOI: 10.6084/m9.figshare.1090729
title: Data from the paper "Regression for Citation Data"

description: Data from the paper "Regression for Citation Data"
DOI: 10.6084/m9.figshare.1090727.v1
title: Bridging developmental boundaries: lifelong dietary patterns modulate life histories in a parthenogenetic insect

description: Data to accompany PLoS ONE manuscript.
DOI: 10.6084/m9.figshare.1090729.v1
title: Data from the paper "Regression for Citation Data"

description: Data from the paper "Regression for Citation Data"
DOI: 10.6084/m9.figshare.1090726
title: Shark Bay Amphibolis antarctica defoliation follwing 2011 marine heatwave and Wooramel River flood

description: Data on Amphibolis antarctica biomass in the eastern embayment of Shark Bay, Western Australia from 2011-2013. Supporting data on environmental conditions (sea surface temperature and river flow) over similar time period. Data is significant as it indicates a short term loss of seagrass leaf biomass, followed by a longer term loss of seagrass belowground biomass, suggesting that the 2011 WA marine heatwave and Gascoyne floods contributed to reduce resilience in Shark Bay's foundation species. This data is linked to the 2014 Journal of Ecology paper 'Extreme climate events lower resilience of foundation seagrass at edge of biogeographical range'.
DOI: 10.6084/m9.figshare.1091365.v2
title: Latitudinal gradient data

description: The data presented in the following two sheets ("Coenagrion puella" and "Pyrrhosoma nymphula") relate to individuals of <em>Coenagrion puella</em> and <em>Pyrrhosoma nymphula</em> that were collected in 2007 at a variety of sites across the UK. Details of methods, etc, can be found in the linked publication. Also, all specimens have been preserved in 95% ethanol since the project and can be accessed if somebody is interested in the population genetics of the system.
DOI: 10.6084/m9.figshare.1091365.v3
title: Latitudinal gradient data

description: The data presented in the following two sheets ("Coenagrion puella" and "Pyrrhosoma nymphula") relate to individuals of <em>Coenagrion puella</em> and <em>Pyrrhosoma nymphula</em> that were collected in 2007 at a variety of sites across the UK. Details of methods, etc, can be found in the linked publication. Also, all specimens have been preserved in 95% ethanol since the project and can be accessed if somebody is interested in the population genetics of the system.
DOI: 10.6084/m9.figshare.1090726.v1
title: Shark Bay Amphibolis defoliation

description: Data on Amphibolis antarctica biomass in the eastern embayment of Shark Bay, Western Australia from 2011-2013. Supporting data on environmental conditions (sea surface temperature and river flow) over similar time period. Data is significant as it indicates a short term loss of seagrass leaf biomass, followed by a longer term loss of seagrass belowground biomass, suggesting that the 2011 WA marine heatwave and Gascoyne floods contributed to reduce resilience in Shark Bay's foundation species.
DOI: 10.6084/m9.figshare.1091365.v4
title: Latitudinal gradient data

description: The data presented in the following two sheets ("Coenagrion puella" and "Pyrrhosoma nymphula") relate to individuals of <em>Coenagrion puella</em> and <em>Pyrrhosoma nymphula</em> that were collected in 2007 at a variety of sites across the UK. Details of methods, etc, can be found in the linked publication. Also, all specimens have been preserved in 95% ethanol since the project and can be accessed if somebody is interested in the population genetics of the system.
DOI: 10.6084/m9.figshare.1090726.v2
title: 2011 Shark Bay Amphibolis antarctica defoliation

description: Data on Amphibolis antarctica biomass in the eastern embayment of Shark Bay, Western Australia from 2011-2013. Supporting data on environmental conditions (sea surface temperature and river flow) over similar time period. Data is significant as it indicates a short term loss of seagrass leaf biomass, followed by a longer term loss of seagrass belowground biomass, suggesting that the 2011 WA marine heatwave and Gascoyne floods contributed to reduce resilience in Shark Bay's foundation species.
DOI: 10.6084/m9.figshare.1091365.v5
title: Latitudinal gradient data

description: The data presented in the following two sheets ("Coenagrion puella" and "Pyrrhosoma nymphula") relate to individuals of <em>Coenagrion puella</em> and <em>Pyrrhosoma nymphula</em> that were collected in 2007 at a variety of sites across the UK. Details of methods, etc, can be found in the linked publication. Also, all specimens have been preserved in 95% ethanol since the project and can be accessed if somebody is interested in the population genetics of the system.
DOI: 10.6084/m9.figshare.1090078
title: Antitumor effect of the tyrosine kinase inhibitor nilotinib on gastrointestinal stromal tumor (GIST) and imatinib-resistant GIST cells

description: Antitumor effect of the tyrosine kinase inhibitor nilotinib on gastrointestinal stromal tumor (GIST) and imatinib-resistant GIST cells
DOI: 10.6084/m9.figshare.1090004
title: apoptosis assay

description: apoptosis assay date
DOI: 10.6084/m9.figshare.1090004.v1
title: apoptosis assay

description: apoptosis assay date
DOI: 10.6084/m9.figshare.1091365.v6
title: Latitudinal gradient data

description: The data presented in the following two sheets ("Coenagrion puella" and "Pyrrhosoma nymphula") relate to individuals of <em>Coenagrion puella</em> and <em>Pyrrhosoma nymphula</em> that were collected in 2007 at a variety of sites across the UK. Details of methods, etc, can be found in the linked publication. Also, all specimens have been preserved in 95% ethanol since the project and can be accessed if somebody is interested in the population genetics of the system.
DOI: 10.6084/m9.figshare.1089919
title: in vitro drug assay

description: in vitro drug assay date
DOI: 10.6084/m9.figshare.1089968
title: in vivo drug assay

description: in vivo drug assay date
DOI: 10.6084/m9.figshare.1091365.v8
title: Latitudinal gradient data

description: The data presented in the following two sheets ("Coenagrion puella" and "Pyrrhosoma nymphula") relate to individuals of <em>Coenagrion puella</em> and <em>Pyrrhosoma nymphula</em> that were collected in 2007 at a variety of sites across the UK. Details of methods, etc, can be found in the linked publication. Also, all specimens have been preserved in 95% ethanol since the project and can be accessed if somebody is interested in the population genetics of the system.
DOI: 10.6084/m9.figshare.1090078.v1
title: Antitumor effect of the tyrosine kinase inhibitor nilotinib on gastrointestinal stromal tumor (GIST) and imatinib-resistant GIST cells

description: Antitumor effect of the tyrosine kinase inhibitor nilotinib on gastrointestinal stromal tumor (GIST) and imatinib-resistant GIST cells
DOI: 10.6084/m9.figshare.1091365.v7
title: Latitudinal gradient data

description: The data presented in the following two sheets ("Coenagrion puella" and "Pyrrhosoma nymphula") relate to individuals of <em>Coenagrion puella</em> and <em>Pyrrhosoma nymphula</em> that were collected in 2007 at a variety of sites across the UK. Details of methods, etc, can be found in the linked publication. Also, all specimens have been preserved in 95% ethanol since the project and can be accessed if somebody is interested in the population genetics of the system.
DOI: 10.6084/m9.figshare.1089919.v2
title: in vitro drug assay

description: in vitro drug assay date
DOI: 10.6084/m9.figshare.1089919.v1
title: in vivo drug assay

description: in vivo drug assay date
DOI: 10.6084/m9.figshare.1090078.v2
title: Antitumor effect of the tyrosine kinase inhibitor nilotinib on gastrointestinal stromal tumor (GIST) and imatinib-resistant GIST cells

description: Antitumor effect of the tyrosine kinase inhibitor nilotinib on gastrointestinal stromal tumor (GIST) and imatinib-resistant GIST cells
DOI: 10.6084/m9.figshare.1089654
title: t

description: hhjhj
DOI: 10.6084/m9.figshare.1090078.v3
title: Antitumor effect of the tyrosine kinase inhibitor nilotinib on gastrointestinal stromal tumor (GIST) and imatinib-resistant GIST cells

description: Antitumor effect of the tyrosine kinase inhibitor nilotinib on gastrointestinal stromal tumor (GIST) and imatinib-resistant GIST cells
DOI: 10.6084/m9.figshare.1089654.v1
title: Chapter 4 - Classifying complex dynamic patterns into phoneme categories. Strong Inference

description: Chapter 4 of: <strong>Beyond the boundary.</strong> <em>An analysis of verisimilitude and causal ontology of scientific claims: Aetiologies of developmental dyslexia as a case in point.</em>
DOI: 10.6084/m9.figshare.1089654.v2
title: Chapter 4 - Classifying complex dynamic patterns into phoneme categories. Strong Inference

description: Chapter 4 of: <strong>Beyond the boundary.</strong> <em>An analysis of verisimilitude and causal ontology of scientific claims: Aetiologies of developmental dyslexia as a case in point.</em>
DOI: 10.6084/m9.figshare.1089635
title: Adaptive imaging cytometry to estimate parameters of gene networks models in systems and synthetic biology

description: The use of microfluidics in live cell imaging allows the acquisition of dense time-series from individual cells that can be perturbed through computer-controlled changes of growth medium. Systems and synthetic biologists frequently perform gene expression studies that require changes in growth conditions to characterize the stability of switches, the transfer function of a genetic device, or the oscillations of gene networks. It is rarely possible to know a priori at what times the various changes should be made, and the success of the experiment is unknown until all of the image processing is completed well after the completion of the experiment. This results in wasted time and resources, due to the need to repeat the experiment to fine-tune the imaging parameters. To overcome this limitation, we have developed an adaptive imaging platform called GenoSIGHT that processes images as they are recorded, and uses the resulting data to make real-time adjustments to experimental conditions. We have validated this closed-loop control of the experiment using galactose-inducible expression of the yellow fluorescent protein Venus in Saccharomyces cerevisiae. We show that adaptive imaging improves the reproducibility of gene expression data resulting in more accurate estimates of gene network parameters while increasing productivity ten-fold.
DOI: 10.6084/m9.figshare.1089654.v3
title: Chapter 4 - Classifying complex dynamic patterns into phoneme categories. Strong Inference

description: Chapter 4 of: <strong>Beyond the boundary.</strong> <em>An analysis of verisimilitude and causal ontology of scientific claims: Aetiologies of developmental dyslexia as a case in point.</em>
DOI: 10.6084/m9.figshare.1089654.v4
title: Chapter 4 - Classifying complex dynamic patterns into phoneme categories. Strong Inference

description: Chapter 4 of: <strong>Beyond the boundary.</strong> <em>An analysis of verisimilitude and causal ontology of scientific claims: Aetiologies of developmental dyslexia as a case in point.</em>
DOI: 10.6084/m9.figshare.1089635.v2
title: Adaptive imaging cytometry to estimate parameters of gene networks models in systems and synthetic biology

description: The use of microfluidics in live cell imaging allows the acquisition of dense time-series from individual cells that can be perturbed through computer-controlled changes of growth medium. Systems and synthetic biologists frequently perform gene expression studies that require changes in growth conditions to characterize the stability of switches, the transfer function of a genetic device, or the oscillations of gene networks. It is rarely possible to know a priori at what times the various changes should be made, and the success of the experiment is unknown until all of the image processing is completed well after the completion of the experiment. This results in wasted time and resources, due to the need to repeat the experiment to fine-tune the imaging parameters. To overcome this limitation, we have developed an adaptive imaging platform called GenoSIGHT that processes images as they are recorded, and uses the resulting data to make real-time adjustments to experimental conditions. We have validated this closed-loop control of the experiment using galactose-inducible expression of the yellow fluorescent protein Venus in Saccharomyces cerevisiae. We show that adaptive imaging improves the reproducibility of gene expression data resulting in more accurate estimates of gene network parameters while increasing productivity ten-fold.
DOI: 10.6084/m9.figshare.1089632
title: Dutch charities 2014

description: An XML dataset containing a list made by the Belastingdienst (Dutch Tax and Customs Administration) of all official charities in the Netherlands. The dataset was made by scraping the database at http://www.belastingdienst.nl/rekenhulpen/giften/anbi_zoeken/ <br><br>The same data should be available and queryable at http://www.openbelastingdienst.nl/anbi/
DOI: 10.6084/m9.figshare.1089654.v6
title: t

description: hhjhj
DOI: 10.6084/m9.figshare.1089635.v1
title: Adaptive imaging cytometry to estimate parameters of gene networks models in systems and synthetic biology

description: The use of microfluidics in live cell imaging allows the acquisition of dense time-series from individual cells that can be perturbed through computer-controlled changes of growth medium. Systems and synthetic biologists frequently perform gene expression studies that require changes in growth conditions to characterize the stability of switches, the transfer function of a genetic device, or the oscillations of gene networks. It is rarely possible to know a priori at what times the various changes should be made, and the success of the experiment is unknown until all of the image processing is completed well after the completion of the experiment. This results in wasted time and resources, due to the need to repeat the experiment to fine-tune the imaging parameters. To overcome this limitation, we have developed an adaptive imaging platform called GenoSIGHT that processes images as they are recorded, and uses the resulting data to make real-time adjustments to experimental conditions. We have validated this closed-loop control of the experiment using galactose-inducible expression of the yellow fluorescent protein Venus in Saccharomyces cerevisiae. We show that adaptive imaging improves the reproducibility of gene expression data resulting in more accurate estimates of gene network parameters while increasing productivity ten-fold.
DOI: 10.6084/m9.figshare.1089654.v5
title: draft

description: _
DOI: 10.6084/m9.figshare.1089606.v1
title: NSF_PlantGenomeResearchProgram_Meeting_2010posterPDF

description: Poster from HW Bass et al for anual NSF Plant Genome Research Program Awardees meeting, Arlington, VA, Sept. 2010. This poster describes the maize chromatin mapping project plans (NSF IOS 1025954, "Chromatin Structure and Genome Response in Maize" (CSAGRIM project); FSU, FAMU , Tallahassee, FL.
DOI: 10.6084/m9.figshare.1089578
title: Supplemental Material S1

description: Supplemental material for FASEBJ manuscript 14-255000: The human skeletal muscle transcriptome: sex differences, alternative splicing and tissue homogeneity assessed with RNA sequencing
DOI: 10.6084/m9.figshare.1089568
title: A harmonised approach for identifying core foods for total diet studies

description: Total diet studies (TDS) are used to gather information on chemical substances in food, thereby facilitating risk assessments and health monitoring. Candidate foods for inclusion in a TDS should represent a large part of a typical diet to estimate accurately the exposure of a population and/or specific population groups. There are currently no harmonised guidelines for the selection of foods in a TDS, and so the aim of this study was to explore the possibility of generating a harmonised approach to be used across Europe. Summary statistics data from the European Food Safety Authority’s (EFSA) Comprehensive Food Consumption Database were used in this research, which provided data from national food consumption surveys in Europe. The chosen methodology for the selection of foods was based on the weight of food consumed and consumer rate. Using the available data, 59 TDS food lists were created, representing over 51 000 people across 17 countries and seven population groups. All TDS food lists represented &gt; 85% of the populations’ diets (85.9–96.3%), while the number of foods in the TDS food lists ranged from 15 to 102. Comparison of the TDS food lists indicated that the most commonly consumed foods included wheat bread and rolls, pastries and cakes, tomatoes, apples, bananas, and chicken, while cow’s milk, tap water and orange juice were the most commonly consumed beverages across Europe. This work was complete to support EFSA and other institutions in the development of harmonised TDS into the future.
DOI: 10.6084/m9.figshare.1089568.v2
title: A harmonised approach for identifying core foods for total diet studies

description: Total diet studies (TDS) are used to gather information on chemical substances in food, thereby facilitating risk assessments and health monitoring. Candidate foods for inclusion in a TDS should represent a large part of a typical diet to estimate accurately the exposure of a population and/or specific population groups. There are currently no harmonised guidelines for the selection of foods in a TDS, and so the aim of this study was to explore the possibility of generating a harmonised approach to be used across Europe. Summary statistics data from the European Food Safety Authority’s (EFSA) Comprehensive Food Consumption Database were used in this research, which provided data from national food consumption surveys in Europe. The chosen methodology for the selection of foods was based on the weight of food consumed and consumer rate. Using the available data, 59 TDS food lists were created, representing over 51 000 people across 17 countries and seven population groups. All TDS food lists represented &gt; 85% of the populations’ diets (85.9–96.3%), while the number of foods in the TDS food lists ranged from 15 to 102. Comparison of the TDS food lists indicated that the most commonly consumed foods included wheat bread and rolls, pastries and cakes, tomatoes, apples, bananas, and chicken, while cow’s milk, tap water and orange juice were the most commonly consumed beverages across Europe. This work was complete to support EFSA and other institutions in the development of harmonised TDS into the future.
DOI: 10.6084/m9.figshare.1089578.v1
title: Supplemental Material S1

description: Supplemental material for FASEBJ manuscript 14-255000: The human skeletal muscle transcriptome: sex differences, alternative splicing and tissue homogeneity assessed with RNA sequencing
DOI: 10.6084/m9.figshare.1089568.v1
title: A harmonised approach for identifying core foods for total diet studies

description: Total diet studies (TDS) are used to gather information on chemical substances in food, thereby facilitating risk assessments and health monitoring. Candidate foods for inclusion in a TDS should represent a large part of a typical diet to estimate accurately the exposure of a population and/or specific population groups. There are currently no harmonised guidelines for the selection of foods in a TDS, and so the aim of this study was to explore the possibility of generating a harmonised approach to be used across Europe. Summary statistics data from the European Food Safety Authority’s (EFSA) Comprehensive Food Consumption Database were used in this research, which provided data from national food consumption surveys in Europe. The chosen methodology for the selection of foods was based on the weight of food consumed and consumer rate. Using the available data, 59 TDS food lists were created, representing over 51 000 people across 17 countries and seven population groups. All TDS food lists represented &gt; 85% of the populations’ diets (85.9–96.3%), while the number of foods in the TDS food lists ranged from 15 to 102. Comparison of the TDS food lists indicated that the most commonly consumed foods included wheat bread and rolls, pastries and cakes, tomatoes, apples, bananas, and chicken, while cow’s milk, tap water and orange juice were the most commonly consumed beverages across Europe. This work was complete to support EFSA and other institutions in the development of harmonised TDS into the future.
DOI: 10.6084/m9.figshare.1089578.v3
title: Supplemental Material S1

description: Supplemental material for FASEBJ manuscript 14-255000: The human skeletal muscle transcriptome: sex differences, alternative splicing and tissue homogeneity assessed with RNA sequencing
DOI: 10.6084/m9.figshare.1089578.v2
title: Ancillary Table A1

description: Supplemental material for FASEBJ manuscript 14-255000: The human skeletal muscle transcriptome: sex differences, alternative splicing and tissue homogeneity assessed with RNA sequencing