cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20729794
title: Supplementary: Implications of a HbA1c based diabetes screening on prevalence and impact of dysglycemia in patients with COVID-19

description: Purpose: In patients with SARS-CoV-2 infection, diabetes is associated with poor COVID-19 prognosis. However, case detection strategy is divergent and reported prevalence varies from 5 to 35%. We examined in how far the choice of screening tools impacts the detection rate of dysglycemia and in consequence the estimation of diagnosis-associated risk for moderate (mo) or severe (s) COVID-19. Methods: Non-ICU in-patients with COVID-19 were screened systematically at admission for diabetes (D) and prediabetes (PreD) by HbA1c (A), random blood glucose (B) and known history (C) during 01/NOV/2020-08/MAR/2021. Dysglycemia rate and impact on COVID-19 outcome were analyzed in two screening strategies (ABC vs. BC). Results: 578/601 (96.2%) of admitted patients were screened and analyzed. In ABC, prevalence of D and PreD was 38.2 and 37.5%, respectively. D was significantly associated with an increased risk for more severe COVID-19 (aOR(moCOVID-19): 2.14, 95%CI: 1.22-3.75 and aOR(sCOVID-19): 2.83, 95%CI:1.54-5.19). Patients with PreD also presented more often with more severe COVID-19 than those with normoglycemia (aOR(moCOVID-19): 1.76, 95%CI: 1.04-2.97 and aOR(sCOVID-19): 2.41, 95%CI: 1.37-4.23). Screening with BC only failed to identify 96% of PreD (206/217) and 26.2% of D diagnosis (58/221) and missed association of dysglycemia and COVID-19 severity. Conclusions: Pandemic conditions may hamper dysglycemia detection rate and in consequence the awareness of individual patient risk for COVID-19 severity. A systematic diabetes screening including HbA1c reduces underdiagnosis of previously unknown or new onset dysglycemia, enhances the quality of risk estimation and access of patients at risk to a diabetes-specific intervention.
DOI: 10.6084/m9.figshare.20729794.v1
title: Supplementary: Implications of a HbA1c based diabetes screening on prevalence and impact of dysglycemia in patients with COVID-19

description: Purpose: In patients with SARS-CoV-2 infection, diabetes is associated with poor COVID-19 prognosis. However, case detection strategy is divergent and reported prevalence varies from 5 to 35%. We examined in how far the choice of screening tools impacts the detection rate of dysglycemia and in consequence the estimation of diagnosis-associated risk for moderate (mo) or severe (s) COVID-19. Methods: Non-ICU in-patients with COVID-19 were screened systematically at admission for diabetes (D) and prediabetes (PreD) by HbA1c (A), random blood glucose (B) and known history (C) during 01/NOV/2020-08/MAR/2021. Dysglycemia rate and impact on COVID-19 outcome were analyzed in two screening strategies (ABC vs. BC). Results: 578/601 (96.2%) of admitted patients were screened and analyzed. In ABC, prevalence of D and PreD was 38.2 and 37.5%, respectively. D was significantly associated with an increased risk for more severe COVID-19 (aOR(moCOVID-19): 2.14, 95%CI: 1.22-3.75 and aOR(sCOVID-19): 2.83, 95%CI:1.54-5.19). Patients with PreD also presented more often with more severe COVID-19 than those with normoglycemia (aOR(moCOVID-19): 1.76, 95%CI: 1.04-2.97 and aOR(sCOVID-19): 2.41, 95%CI: 1.37-4.23). Screening with BC only failed to identify 96% of PreD (206/217) and 26.2% of D diagnosis (58/221) and missed association of dysglycemia and COVID-19 severity. Conclusions: Pandemic conditions may hamper dysglycemia detection rate and in consequence the awareness of individual patient risk for COVID-19 severity. A systematic diabetes screening including HbA1c reduces underdiagnosis of previously unknown or new onset dysglycemia, enhances the quality of risk estimation and access of patients at risk to a diabetes-specific intervention.
DOI: 10.5526/erdr-00000155
title: Variations of GIT quotients for complete intersections package
DOI: 10.6084/m9.figshare.20265912
title: Removal of arsenic from contaminated water using radiation-induced grafted chitosan: a critical review

description: Increasing exposure to Arsenic pollution is one of the biggest concerns regarding public health, water quality and ecosystem conservation. Arsenic pollution, in particular, has recently attracted attention, due to the contamination of drinking water. In recent years, Chitosan-based adsorbents have been used in the treatment of contaminated water. However, there are some disadvantages that resist the practical applications of chitosan, such as low solubility in acidic media, mechanical strength, selectivity and adsorption capacity. Thus functional modifications on chitosan are carried out to improve its properties. This review provides information on As contamination in complex environmental settings. It mainly describes the applications of the radiation-induced grafted biopolymer in the removal of arsenic from contaminated water. It also highlights the adsorbent’s regeneration, disposal methods and its cost evaluation.
DOI: 10.6084/m9.figshare.20265912.v1
title: Removal of arsenic from contaminated water using radiation-induced grafted chitosan: a critical review

description: Increasing exposure to Arsenic pollution is one of the biggest concerns regarding public health, water quality and ecosystem conservation. Arsenic pollution, in particular, has recently attracted attention, due to the contamination of drinking water. In recent years, Chitosan-based adsorbents have been used in the treatment of contaminated water. However, there are some disadvantages that resist the practical applications of chitosan, such as low solubility in acidic media, mechanical strength, selectivity and adsorption capacity. Thus functional modifications on chitosan are carried out to improve its properties. This review provides information on As contamination in complex environmental settings. It mainly describes the applications of the radiation-induced grafted biopolymer in the removal of arsenic from contaminated water. It also highlights the adsorbent’s regeneration, disposal methods and its cost evaluation.
DOI: 10.6084/m9.figshare.20729944
title: manganese deposits

description: Table S1 elemental composition obtained from bulk samples Table S2 elemental composition obtained fromLA-ICPMS
DOI: 10.6084/m9.figshare.20729944.v1
title: manganese deposits

description: Table S1 elemental composition obtained from bulk samples Table S2 elemental composition obtained fromLA-ICPMS
DOI: 10.6084/m9.figshare.20626095
title: R scripts and raw data

description: "R scripts" summarizes R scripts used for figure preparation and statistical analysis. <br> "RawData" summarizes all numerical data shown in this study. Asterisks indicate numerical data used for graphs.
DOI: 10.6084/m9.figshare.20626095.v1
title: R scripts and raw data

description: "R scripts" summarizes R scripts used for figure preparation and statistical analysis. <br> "RawData" summarizes all numerical data shown in this study. Asterisks indicate numerical data used for graphs.
DOI: 10.5281/zenodo.6671562
title: Colorectal cancer and adenoma metagenomes

description: Normalized counts of species identified by shotgun sequencing in 156 stool samples of 51 colorectal cancer patients, 54 patients with adenoma, and 51 controls.
DOI: 10.5281/zenodo.6671561
title: Colorectal cancer and adenoma metagenomes

description: Normalized counts of species identified by shotgun sequencing in 156 stool samples of 51 colorectal cancer patients, 54 patients with adenoma, and 51 controls.
DOI: 10.6084/m9.figshare.20646858
title: Confocal images

description: Folder name "Mutants_Dib_Hoechst": prothoracic glands of wild type and mutant animals stained by anti-Dib antibody (green) and Hoechst (blue) (GIF format) <br> Folder name "RNAi_Dib_Hoechst": prothoracic glands of control and knockdown animals expressing mCherry.nls (red) stained with Hoechst (blue) (GIF format) <br> Folder name "RNAi_Nvd_Spok_Sro": prothoracic glands of control and knockdown animals expressing mCherry.nls (red) stained by anti-Nvd/Spok/Sro antibody (green) <br> Folder name "Su(var)2-10-GFP": prothoracic glands of control and knockdown animals expressing Su(var)2-10-GFP (c3) and mCherry.nls (c2) stained by anti-HP1a antibody (c1) and Hoechst (c4)
DOI: 10.6084/m9.figshare.20646858.v1
title: Confocal images

description: Folder name "Mutants_Dib_Hoechst": prothoracic glands of wild type and mutant animals stained by anti-Dib antibody (green) and Hoechst (blue) (GIF format) <br> Folder name "RNAi_Dib_Hoechst": prothoracic glands of control and knockdown animals expressing mCherry.nls (red) stained with Hoechst (blue) (GIF format) <br> Folder name "RNAi_Nvd_Spok_Sro": prothoracic glands of control and knockdown animals expressing mCherry.nls (red) stained by anti-Nvd/Spok/Sro antibody (green) <br> Folder name "Su(var)2-10-GFP": prothoracic glands of control and knockdown animals expressing Su(var)2-10-GFP (c3) and mCherry.nls (c2) stained by anti-HP1a antibody (c1) and Hoechst (c4)
DOI: 10.6084/m9.figshare.20614728
title: Deus ex machina sample output file

description: This is a sample output CSV file from the <em>Deus ex machina </em>tool. <br> The <em>Deus ex machina</em> code is available on GitHub via this link: https://github.com/code56/ontologiesreproducibility.git <br> Briefly, the code performs semantic annotations on PDF articles and their associated ArrayExpress XML files and computes a Reproducibility Metric Score (RMS) based on various assessment parameters. <br> The case studies are in the field of wheat crop transcriptomics. <br> <br> <br>
DOI: 10.6084/m9.figshare.20614728.v1
title: Deus ex machina sample output file

description: This is a sample output CSV file from the <em>Deus ex machina </em>tool. <br> The <em>Deus ex machina</em> code is available on GitHub via this link: https://github.com/code56/ontologiesreproducibility.git <br> Briefly, the code performs semantic annotations on PDF articles and their associated ArrayExpress XML files and computes a Reproducibility Metric Score (RMS) based on various assessment parameters. <br> The case studies are in the field of wheat crop transcriptomics. <br> <br> <br>
DOI: 10.5517/ccdc.csd.cc21hyfy
title: CCDC 1892160: Experimental Crystal Structure Determination

description: Related Article: Peng Liu, Chao Li, Wen-Jiao Yuan|2019|Inorg.Chim.Acta|490|1|doi:10.1016/j.ica.2019.02.039
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2btrgd
title: CCDC 2169704: Experimental Crystal Structure Determination

description: Related Article: Şükriye Çakmak, Tuğba Aycan, Filiz Öztürk, Aysel Veyisoğlu|2022|J.Mol.Struct.|1270|133937|doi:10.1016/j.molstruc.2022.133937
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e178941
title: The effects of walking speed on human gait complexity during treadmill walking

description: In recent years the use of sample entropy (SampEn) to evaluate the complexity of the locomotor system in human gait data has gained in popularity. However, it has been suggested that SampEn is sensitive to various input parameters and signal preprocessing methods. This study quantified the effects of different temporal and spatial normalization approaches and various lengths of the template vector (m) on SampEn calculations. The discriminatory ability of SampEn was studied by comparing two walking conditions. Twenty-three participants walked on a treadmill with preferred (Vpref) and maximum (Vmax) speed. Data were segmented and resampled (SEGM), resampled and spatially normalized (NORM), resampled and detrended (ZERO). For vertical ground reaction force (vGRF) and center of pressure in anterio-posterior direction (COPap), in both walking conditions, SampEn was generally sensitive to the vector length and not to the data processing, except for COPap in ZERO, m=2,4. For the COPml SampEn behaved oppositely, it was sensitive to preprocessing method and not to the length of the template vector. For the COPml only two signals, WHOLE and ZERO, were sensitive enough to reveal increased complexity caused by changes in walking velocity. The regularity of COPap and vGRF in all processed signals increased in Vmax condition. SampEn was able to discriminate between different walking conditions in all analyzed variables, but not in all signals. Depending on evaluated variable, SampEn was susceptible in different way for the m level and processing method. Hence, these should be checked and selected for each variable independently.
DOI: 10.3886/e178941v1
title: The effects of walking speed on human gait complexity during treadmill walking

description: In recent years the use of sample entropy (SampEn) to evaluate the complexity of the locomotor system in human gait data has gained in popularity. However, it has been suggested that SampEn is sensitive to various input parameters and signal preprocessing methods. This study quantified the effects of different temporal and spatial normalization approaches and various lengths of the template vector (m) on SampEn calculations. The discriminatory ability of SampEn was studied by comparing two walking conditions. Twenty-three participants walked on a treadmill with preferred (Vpref) and maximum (Vmax) speed. Data were segmented and resampled (SEGM), resampled and spatially normalized (NORM), resampled and detrended (ZERO). For vertical ground reaction force (vGRF) and center of pressure in anterio-posterior direction (COPap), in both walking conditions, SampEn was generally sensitive to the vector length and not to the data processing, except for COPap in ZERO, m=2,4. For the COPml SampEn behaved oppositely, it was sensitive to preprocessing method and not to the length of the template vector. For the COPml only two signals, WHOLE and ZERO, were sensitive enough to reveal increased complexity caused by changes in walking velocity. The regularity of COPap and vGRF in all processed signals increased in Vmax condition. SampEn was able to discriminate between different walking conditions in all analyzed variables, but not in all signals. Depending on evaluated variable, SampEn was susceptible in different way for the m level and processing method. Hence, these should be checked and selected for each variable independently.
DOI: 10.5517/ccdc.csd.cc2cpqtm
title: CCDC 2195631: Experimental Crystal Structure Determination

description: Related Article: N. Shank, A.L. Stadler, S.P. Barrett, C.W. Padgett|2022|IUCrData|7|x220797|doi:10.1107/S2414314622007970
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2779g8
title: CCDC 2062599: Experimental Crystal Structure Determination

description: Related Article: Souradip Dasgupta, Shrobona Banerjee, Sharmistha Das, Anindya Datta|2021|Phys.Chem.Chem.Phys.(PCCP)|23|19494|doi:10.1039/D1CP02540F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27hcfk
title: CCDC 2070348: Experimental Crystal Structure Determination

description: Related Article: Dennis Rottschäfer, Timo Glodde, Beate Neumann, Hans-Georg Stammler, Diego M. Andrada, Rajendra S. Ghadwal|2021|Angew.Chem.,Int.Ed.|60|15849|doi:10.1002/anie.202105835
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27lstg
title: CCDC 2073646: Experimental Crystal Structure Determination

description: Related Article: Ioannis Mylonas-Margaritis, Júlia Mayans, Wenming Tong, Pau Farràs, Albert Escuer, Patrick McArdle, Constantina Papatriantafyllopoulou|2021|CrystEngComm|23|5489|doi:10.1039/D1CE00659B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25574/48867
title: Chandra X-ray Observatory ObsId 48867
DOI: 10.25574/48904
title: Chandra X-ray Observatory ObsId 48904
DOI: 10.25574/48933
title: Chandra X-ray Observatory ObsId 48933
DOI: 10.25574/48978
title: Chandra X-ray Observatory ObsId 48978
DOI: 10.25574/48983
title: Chandra X-ray Observatory ObsId 48983
DOI: 10.5281/zenodo.7034175
title: Estimation of Hailstone Radii using the Collatz Conjecture

description: There is an alleged connection between a much researched, yet unsolved math problem, the Collatz conjecture, and a quite common, damaging meteorological phenomenon: hailstorm. The relationship would be that, in sequences generated by Collatz algorithm, the way in which numbers rise and fall resembles hailstones going up and down inside a cloud, whence the name “Hailstone sequences”. The aim of this paper is two-fold: first, to use JavaScript to research on the Collatz conjecture with the perspective of a high school student. Our algorithm tested a generalized form of the conjecture for multiple primes (p =3, 5, 7) and signs (+, -). Our first Excel sheet (Collatz Java Code Analysis) tabulates the converging values, total stopping time and maximum value attained for different n, p, sign combinations. The Pearson correlation coefficient found between the initial value and, respectively, the total stopping time or the maximum value reached excluded any linear correlation. The second (and main) goal was to assess the hypothesis whether hailstones could indeed follow a Collatz-like function trajectory, studying the implication on the radii of them. Introducing the concept of <em>conversion formula, </em>we estimated the final radii for different functions (straight line, square-root, square, logarithmic, exponential), unit of measures (from Km to mm), and starting heights ranging from 4000m to 10000m, should the motion of hailstones behave like a Collatz function. Our second Excel file (Hailstone simulation new R old C) tabulates the radii achieved for different height, unit of measure and function combinations. In all but one case, we did not get radii believable in size, and <em>reasonably</em> randomly distributed. Instead, for the linear formula (in cm), the -test value between our estimated values and Nelson’s model values was 0.70. Hence, in this case we cannot dismiss the initial hypothesis and further steps should be taken.
DOI: 10.5281/zenodo.7034174
title: Estimation of Hailstone Radii using the Collatz Conjecture

description: There is an alleged connection between a much researched, yet unsolved math problem, the Collatz conjecture, and a quite common, damaging meteorological phenomenon: hailstorm. The relationship would be that, in sequences generated by Collatz algorithm, the way in which numbers rise and fall resembles hailstones going up and down inside a cloud, whence the name “Hailstone sequences”. The aim of this paper is two-fold: first, to use JavaScript to research on the Collatz conjecture with the perspective of a high school student. Our algorithm tested a generalized form of the conjecture for multiple primes (p =3, 5, 7) and signs (+, -). Our first Excel sheet (Collatz Java Code Analysis) tabulates the converging values, total stopping time and maximum value attained for different n, p, sign combinations. The Pearson correlation coefficient found between the initial value and, respectively, the total stopping time or the maximum value reached excluded any linear correlation. The second (and main) goal was to assess the hypothesis whether hailstones could indeed follow a Collatz-like function trajectory, studying the implication on the radii of them. Introducing the concept of <em>conversion formula, </em>we estimated the final radii for different functions (straight line, square-root, square, logarithmic, exponential), unit of measures (from Km to mm), and starting heights ranging from 4000m to 10000m, should the motion of hailstones behave like a Collatz function. Our second Excel file (Hailstone simulation new R old C) tabulates the radii achieved for different height, unit of measure and function combinations. In all but one case, we did not get radii believable in size, and <em>reasonably</em> randomly distributed. Instead, for the linear formula (in cm), the -test value between our estimated values and Nelson’s model values was 0.70. Hence, in this case we cannot dismiss the initial hypothesis and further steps should be taken.
DOI: 10.6084/m9.figshare.20730037
title: Irradiated TUT4-KO HEEC-KEGG-Classification-Total.xls

description: KEGG-Classification Irradiated TUT4-KO HEEC-KEGG-Classification-Total
DOI: 10.6084/m9.figshare.20730037.v1
title: Irradiated TUT4-KO HEEC-KEGG-Classification-Total.xls

description: KEGG-Classification Irradiated TUT4-KO HEEC-KEGG-Classification-Total
DOI: 10.6084/m9.figshare.18131161
title: I beg your pardon? Acoustic behaviour of a wild solitary common dolphin who interacts with harbour porpoises

description: Kylie is a solitary common dolphin who inhabits a restricted area within the Firth of Clyde (Scotland). She spends most of her time around navigational buoys in the Hunterston/Fairlie channel, where she has been seen interacting with harbour porpoises. Recordings from 2016 and 2017 were used to study her acoustic behaviour when seen alone and with a porpoise. Clicks were classified as potential porpoise or dolphin clicks based on the waveform, power spectrum, and spectrogram, as well as direction of arrival, inter-click interval, amplitude, and centroid frequency variations. Kylie emitted clicks exclusively, which were of variable nature, including low, mid, and high-frequency (HF, centroid frequency &gt; 100 kHz) as well as broad or narrowband. Some of Kylie’s HF clicks were similar to porpoise clicks both in the time (e.g. polycyclic) and frequency (e.g. narrowband with most energy between 100 and 150 kHz) domains, which cannot fully be explained by recording geometry and directionality effects.