cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.g36p4b
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cubophis caymanus (Garman, 1887))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 56 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045486-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfsq2a
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Merisca cristallina (Spengler, 1798)"
 ]
}

 The dataset includes 115 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107289-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wk82v5
title: Occurrence Download

description: A dataset containing 905 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Micrurus nigrocinctus (Girard, 1854))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 905 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045622-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc9p8t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dibamus greeri Darevsky, 1992)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045444-230224095556074/datasets/export for details.
DOI: 10.15468/dl.27fyd4
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Micranthemum umbrosum (J.F.Gmel.) S.F.Blake"
 ]
}

 The dataset includes 51 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107271-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kptg9
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anisacanthus thurberi (Torr.) A.Gray",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is unknown or invalid"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Continent" : [
 "is North America"
 ]
 }
 }
 ]
}

 The dataset includes 45 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045428-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h747en
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelanthura westringia Poore & Bardsley, 1990"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115412-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmdxng
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dibamus deharvengi Ineich, 1999)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045430-230224095556074/datasets/export for details.
DOI: 10.15468/dl.mu4cx2
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chevalia aviculae Walker, 1904"
 ]
}

 The dataset includes 56 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115430-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrvjwj
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arbutus arizonica (A.Gray) Sarg.",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is unknown or invalid"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Continent" : [
 "is North America"
 ]
 }
 }
 ]
}

 The dataset includes 38 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045439-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bvyed
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhinolambrus turriger (White, 1847)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-14 42, 9 38, -7 26, -14 42))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012141-230828120925497/datasets/export for details.
DOI: 10.15468/dl.cdgzr3
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euaugaptilus magnus (Wolfenden, 1904)"
 ]
}

 The dataset includes 91 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118864-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11072395
title: Jeanbille_et_al_2024_Exclusion_experiment_ANALYSIS: code and data for "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly"

description: Release of code and data associated with the publication "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly".
DOI: 10.5281/zenodo.11072396
title: Jeanbille_et_al_2024_Exclusion_experiment_ANALYSIS: code and data for "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly"

description: Release of code and data associated with the publication "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly".
DOI: 10.15468/dl.b7mr5j
title: Occurrence Download

description: A dataset containing 15754 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mendicula ferruginosa (Forbes, 1844)"
 ]
}

 The dataset includes 15754 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107262-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.paevjr
title: Occurrence Download

description: A dataset containing 2647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona squamosa L.",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is unknown or invalid"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Continent" : [
 "is North America"
 ]
 }
 }
 ]
}

 The dataset includes 2647 records from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045433-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3w4mvh
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thaumatophyllum uliginosum (Mayo) Sakur., Calazans & Mayo"
 ]
}

 The dataset includes 287 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074464-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97rbrq
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polystachya affinis Lindl.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 91 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075823-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbknpx
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.78797 22.80878,-91.06966 21.39995,-92.95961 19.05602,-92.69893 18.00558,-91.48241 16.65769,-90.65691 17.03194,-89.50556 17.44689,-88.50628 17.61261,-87.72961 17.88519,-87.18114 17.77818,-86.42082 19.93657,-86.00807 21.03543,-86.70322 22.34744,-89.78797 22.80878))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phoenicopterus ruber Linnaeus, 1758",
 "Year 2000-2000"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099840-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkb9ak
title: Occurrence Download

description: A dataset containing 2106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona glabra L.",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is unknown or invalid"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Continent" : [
 "is North America"
 ]
 }
 }
 ]
}

 The dataset includes 2106 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045431-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8hqfv
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meiocardia vulgaris (Reeve, 1845)"
 ]
}

 The dataset includes 178 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107256-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8s36pe
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctostaphylos glauca Lindl.",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is unknown or invalid"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "Continent" : [
 "is North America"
 ]
 }
 }
 ]
}

 The dataset includes 70 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045447-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hwe45
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Crossosomatales"
 ]
}

 The dataset includes 130 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045446-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrt2sh
title: Occurrence Download

description: A dataset containing 1444 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tegula brunnea (R.A.Philippi, 1849)"
 ]
}

 The dataset includes 1444 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099841-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u24ww4
title: Occurrence Download

description: A dataset containing 859158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus monogyna Jacq.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 859158 records from 2029 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099845-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yu5fcq
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Mean age, body measurements, and body condition index of polar bear (Ursus maritimus) mothers and cubs"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004409-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.28399181
title: Supporting data for "Decoding The Chemical Language from The Untapped Domain of Archaea"

description: Microorganisms are prolific producers of various secondary metabolites (SMs), encompassing signaling molecules and antimicrobials that play pivotal roles in mediating microbe-microbe interactions. Archaea, the third domain of life, constitute a vast and diverse group of microorganisms thriving in extreme environments and abundantly dispersed throughout nature. Despite their prevalence, our comprehension of the chemical languages within archaeal communities remains extremely limited compared to their extensively studied bacterial counterparts, particularly concerning the structural diversity and ecological functionals of SMs.A comprehensive genome mining effort unveils the largely unexplored biosynthetic potential of archaeal RiPPs, revealing a treasure trove of high novelty compounds. A detailed exploration of one of the largest RiPP families, lanthipeptides, unravels the co-evolution of enzymes and precursors with distinct amino acid biases to bacterial counterparts, potentially for environmental adaptation purposes. Furthermore, the validation of classic and noncanonical lanthipeptides through a novel approach combining the first utilization of heterologous expression in Archaea with rule-based metabolomic analysis showcases their unique chemical characteristics and biosynthetic pathways. Moreover, they exhibit a novel ecological role of RiPPs in enhancing the host's motility by inducing the rod-shaped cell morphology and upregulating the archaellum gene transcription, facilitating the archaeal interaction with abiotic environments and improving nutrient/space competition. This dataset contains the LC-MS and NMR data to support the chemical structure of confirmed lanthipeptides in my thesis.
DOI: 10.25442/hku.28399181.v1
title: Supporting data for "Decoding The Chemical Language from The Untapped Domain of Archaea"

description: Microorganisms are prolific producers of various secondary metabolites (SMs), encompassing signaling molecules and antimicrobials that play pivotal roles in mediating microbe-microbe interactions. Archaea, the third domain of life, constitute a vast and diverse group of microorganisms thriving in extreme environments and abundantly dispersed throughout nature. Despite their prevalence, our comprehension of the chemical languages within archaeal communities remains extremely limited compared to their extensively studied bacterial counterparts, particularly concerning the structural diversity and ecological functionals of SMs.A comprehensive genome mining effort unveils the largely unexplored biosynthetic potential of archaeal RiPPs, revealing a treasure trove of high novelty compounds. A detailed exploration of one of the largest RiPP families, lanthipeptides, unravels the co-evolution of enzymes and precursors with distinct amino acid biases to bacterial counterparts, potentially for environmental adaptation purposes. Furthermore, the validation of classic and noncanonical lanthipeptides through a novel approach combining the first utilization of heterologous expression in Archaea with rule-based metabolomic analysis showcases their unique chemical characteristics and biosynthetic pathways. Moreover, they exhibit a novel ecological role of RiPPs in enhancing the host's motility by inducing the rod-shaped cell morphology and upregulating the archaellum gene transcription, facilitating the archaeal interaction with abiotic environments and improving nutrient/space competition. This dataset contains the LC-MS and NMR data to support the chemical structure of confirmed lanthipeptides in my thesis.
DOI: 10.25442/hku.28387799
title: Supporting data for "Interpreting complex ecological patterns and processes across differentscales using Artificial Intelligence"

description: This thesis bridges the gap between field observations and the empirical understanding of ecological systems by applying AI models at different spatial scales and hierarchical levels to study ecological complexity. The detailed implementation, source code and demo dataset are included in dedicated folders for each chapter.Firstly, a Python package HSC3D, was developed to quantify habitat structural complexity (HSC) at the community level. Built with machine learning algorithms and novel, scale-invariant metrics, this package provides more precise, scale-invariant representations of HSC than traditional approaches, which can be applied to a variety of habitats in different ecosystems. Secondly, at the population level, deep learning (DL) models were benchmarked to inform the best practices in quantifying distribution patterns of intertidal mussels over large spatial scales. By classifying and segmenting mussels at the pixel level, these DL models reduced both false positive samples and user workload, providing an efficient and accurate transferable approach for large scale population surveys. DL models, in combination with novel species annotation strategies, were applied to address a perennial challenge in the identification of populations of invasive mussels from natural populations. This methodology was also adapted for use on mobile phones, allowing users to conduct <i>in-situ</i> surveys and <i>post-hoc</i> analysis, and can be modified for broad accessibility, facilitating immediate application in ecological fieldwork. Lastly, extending to the individual level, explainable AI techniques were employed in the detection of subtidal sea cucumbers. By visualising morphological features important for model predictions, XAI verified that AI decisions align with biologically meaningful traits, thus empowering transparent, individual-based assessments that can also be generalised to other ecosystems.
DOI: 10.6084/m9.figshare.25515019
title: Several samples visually interpreted from the very high-resolution images from Google Earth for rice mapping research in China

description: A dataset for several samples visually interpreted from the very high-resolution images from Google Earth for rice mapping research in China.The file format is GeoParquet, and the geometries are Polygons, which contain three fields: covertype, region, and year, which represent the covertype code, the name of the provincial administrative region, and the year of the polygon, respectively. The meanings of the covertype codes are as follows:0: non-cropland (natural vegetation, built-up areas, water bodies...)1: single-season rice (certain)2: double-season rice (certain)3: rice (uncertain whether it is single- or double-season rice)4: other crops (maize, soybean, peanut...)5: non-rice (maize, soybean, peanut, natural vegetation, built-up areas, water bodies...)
DOI: 10.25442/hku.28381448
title: <i>Supporting data for "GPRC5A promotes lung colonization of esophageal squamous cell carcinoma"</i>

description: This dataset is part of a research project focused on understanding how GPRC5A facilitates lung colonization in esophageal squamous cell carcinoma (ESCC). The study includes basic research using animal models and clinical data from 148 ESCC patients, all of whom provided informed consent. It features clinicopathological characteristics, as well as experimental immunofluorescence and immunohistochemistry staining from our in-house cohort.The dataset includes both raw and processed data from various experiments, such as western blotting, qRT-PCR, functional assays, immunofluorescence, immunohistochemistry, single-cell RNA sequencing, transcriptome analysis, animal model information, and bioluminescence imaging. Each file is organized and clearly labeled to facilitate analysis, assisting researchers in their data exploration. Our project aims to shed light on the mechanisms underlying cancer micrometastasis, fostering further research and discussion in this vital field. We propose that the GPRC5A-mediated WWP1/LATS1/YAP1 axis plays a crucial role in driving both lung micro- and macro-metastases in ESCC. Targeting this axis with CA3 or TED-347 may decrease metastatic potential and offer therapeutic advantages for ESCC patients. We have ensured that all data is anonymized to maintain participant confidentiality and privacy, in compliance with ethical research standards.