cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26036/cnp0002030
title: Phoebe bournei genome

description: Chromosome-scale genome assembly of Phoebe bournei
DOI: 10.26036/cnp0001373
title: Genome sequencing of Sillago japonica

description: The whole genome sequencing and assembly of Sillago japonica.
DOI: 10.26036/cnp0003390
title: Quercus variabilis genome assembly

description: Quercus variabilis genome assembly
DOI: 10.26036/cnp0001384
title: Arachis hypogaea var. peruviana cultivar:PI 590455 Raw sequence reads

description: The chromosome-level genome of Arachis hypogaea var. peruviana cultivar:PI 590455.
DOI: 10.26036/cnp0003554
title: Transcriptome sequences of ICE-treated mouse RAW264.7 macrophage

description: Transcriptome sequencing analysis of LPS-induced RAW 264.7 macrophages treated with ICE was performed to investigate the differentially expressed genes in response to ICE treatment, and to elucidate the potential underlying mechanisms of ICE anti-inflammatory effects at the transcriptome level.
DOI: 10.26036/cnp0002233
title: Genome Project of Heliocidaris

description: In the present study, we aim to get two high-quality genomes of two sea urchins Heliocidaris.
DOI: 10.26036/cnp0003402
title: The complete chloroplast genome of Machilus kwangtungensis Yang (Lauraceae)

description: The complete chloroplast genome of Machilus kwangtungensis Yang (Lauraceae) and its phylogenetic analysis
DOI: 10.26036/cnp0002701
title: peanut Pd01-11

description: peanut sequencing Pd01-11
DOI: 10.26036/cnp0003596
title: Assembly of Verasper variegatus poorly differentiated W chromosome

description: Assembly of Verasper variegatus poorly differentiated W chromosome by combining resequencing and PacBio technology
DOI: 10.26036/cnp0001521
title: Genetic variations in foxtail millet

description: RAD sequencing data from 827 foxtail millet cultivars
DOI: 10.26036/cnp0002121
title: The genome and transcriptome of Citrus grandis 'Tomentosa’

description: 本项目对化橘红进行基因组测序、组装和注释
DOI: 10.26036/cnp0003410
title: The complete chloroplast genome of Machilus salicina Hance (Lauraceae)

description: The complete chloroplast genome of Machilus salicina Hance (Lauraceae)
DOI: 10.26036/cnp0003588
title: Genome sequencing and assembly of Panax notoginseng

description: Genome sequencing and assembly of Panax notoginseng
DOI: 10.26036/cnp0002997
title: Whole-genome sequencing of Gentiana rigescens

description: The high-quality Gentiana rigescens genome reveals temperature-dependent rapid flower opening and closing.
DOI: 10.26036/cnp0002007
title: The pan-Zea genome assembly and annotation

description: This project contains the pan-Zea genome assembly and the predicted gene models.
DOI: 10.26036/cnp0003381
title: Gymnocypris Przewalskii RNA-seq

description: Gymnocypris Przewalskii RNA-seq
DOI: 10.26186/147252
title: National Radioactive Waste Management Facility AEM Survey Logistics Report, AEM Data, and Laterally Constrained Inversion Results

description: In July 2022 an airborne electromagnetic (AEM) survey was flown over and around the proposed site of the National Radioactive Waste Management Facility near the township of Kimba in South Australia. The survey was commissioned by the Australian Radioactive Waste Agency, and was project managed by Geoscience Australia. The survey has Geoscience Australia airborne survey project number P5008.<br>The survey was flown by Skytem Australia Pty Ltd using its SkyTEM312Fast AEM system. The survey was conducted on east-west lines at 500 m spacing, with a smaller central focus area of 100 m spaced lines, acquiring a total of 2,545 line kilometres of data. Skytem Australia Pty Ltd also processed the data.<br>This data package includes the acquisition and processing report, the final processed AEM data and the results of the 1D laterally constrained inversion of the data to conductivity-depth estimates that was carried out by the contractor.
DOI: 10.26036/cnp0002276
title: The bunching onion genome project

description: Assemblies,annotation,assemble and resequence raw data of bunching onion genome
DOI: 10.26036/cnp0001896
title: 山羊进化

description: 国内山羊基因组原始测序数据
DOI: 10.26036/cnp0003415
title: Whole-genome sequencing of Codonopsis pilosula

description: Genome sequencing of Codonopsis pilosula
DOI: 10.26036/cnp0003010
title: 西北农林科技大学山羊脂肪细胞的WGBS测序

description: 我们使用全基因组甲基化测序（Whole Genome Bisulfite Sequencing, WGBS）筛选出山羊乳腺前体脂肪细胞转分化为上皮细胞的关键甲基化位点。我们采用在Matrigel上培养的山羊乳腺上皮细胞的培养基诱导前体脂肪细胞进行转分化，无血清培养基培养前体脂肪细胞为对照组。8天后，收集Matrigel上诱导转分化的前体脂肪细胞和对照组的前体脂肪细胞进行WGBS。揭示山羊乳腺前体脂肪细胞转分化为上皮细胞的表观遗传机制。
DOI: 10.26036/cnp0003287
title: Lipopeptides treatment of Arabidopsis seedlings

description: Treatment of Arabidopsis seedlings with Bacillus subtilis lipopeptide mycosubtilin homologue
DOI: 10.26036/cnp0003566
title: Transcriptome of six chemotype of Cinnamomum camphora

description: Transcriptome of six chemotype of Cinnamomum camphora
DOI: 10.26036/cnp0003045
title: Transcriptome and ATAC Sequencing Data of Crassostrea ariakensis in Different Gonadal Stages

description: The Jinjiang oyster (Crassostrea ariakensis) transcriptome and ATAC sequencing data of different gonadal developmental stages were used to reveal the oyster glycogen metabolism regulatory network.
DOI: 10.26036/cnp0001180
title: GRID-seq data of C2C12 in 0h and 60h

description: We performed GRID-seq which uses a bivalent linker to ligate RNA to DNA in situ on C2C12 proliferating MBs (0h) and fully differentiated MTs (60h). The entire repertoire of chromatin-interacting RNAs and their respective binding sites were identified.
DOI: 10.26036/cnp0003568
title: Transcriptome Sequencing of Goat Adipocytes in Northwest A&F University

description: We used transcriptome sequencing to screen the key regulatory genes for the transdifferentiation of goat mammary preadipocytes into epithelial cells. We used the medium of goat mammary epithelial cells cultured on Matrigel to induce the transdifferentiation of preadipocytes, and the serum free medium was used as the control group. After 8 days, the preadipocytes induced to transdifferentiation on the Matrigel and the preadipocytes in the control group were collected for transcriptome sequencing. To reveal the transcriptional regulation mechanism of goat mammary pre adipocytes transdifferentiation into epithelial cells.
DOI: 10.26036/cnp0000927
title: Macaca brain atlas

description: TBC
DOI: 10.26036/cnp0002277
title: Phylogenomic analyses provide insights into primate genomic and phenotypic evolution

description: phylogenomics and comparative analysis of 50 primate species
DOI: 10.26036/cnp0002104
title: 龙脑香植物基因组计划

description: 本项目通过龙脑香科多个物种基因组的组装，注释和分析，获得了多个龙脑香科植物基因组并分析了其环境适应机制。
DOI: 10.26036/cnp0003525
title: Genome sequencing of Malus hupehensis var. pingyiensis

description: Genome sequencing and assembly of Malus hupehensis var. pingyiensis
DOI: 10.26036/cnp0003540
title: Transcriptome sequencing of Caco2 cell

description: Transcriptome sequencing reveals the response of Caco2 cell to LPS and Poly(I:C) exposure
DOI: 10.26036/cnp0002442
title: Single-cell ATAC-seq maps the comprehensive and dynamic chromatin accessibility landscapes of human CAR-T cell exhaustion

description: Chimeric antigen receptor T cells (CAR-T) therapy has achieved remarkable therapeutic success in treating a variety of hematopoietic malignancies. However, the high relapse rate and poor in vivo persistence, partially caused by CAR-T cell exhaustion, are still important barriers against CAR-T therapy. It remains largely elusive on the mechanisms of CAR-T exhaustion and how to attenuate exhaustion to achieve better therapeutic efficacy. In this study, we performed scATAC-seq assays in CAR-T cells and illustrated the comprehensive dynamic changes of chromatin accessibility in CAR-T cells at the single cell level during CAR-T cells killing tumor cells both in vitro and in vivo.
DOI: 10.26036/cnp0001407
title: The Origin of White mulberry (Morus alba)

description: White mulberry (Morus alba) is native to China, and is widely cultivated around the world, however, the origin of M. alba remains unclear. The taxonomy of genus Morus is complex and disputed. To uncover the origin of M. alba and expand our understanding for taxonomy of genus Morus, we combined four different technologies: Pacbio, Oxford Nanopore, Hi-C, and Illumina Hiseq-platforms for de novo assembly of M. alba var. pendula genome. We assembled more higher quality of reference genome for Morus genus. We also conducted the RNA-seq of M. alba var. pendula to annotate its genome. Furthermore, we resequenced other Morus species except for M. alba to perform the population genetical analyses.
DOI: 10.26036/cnp0003098
title: Paeonia ostii Genome Project

description: Tree peony, known as the ‘king of flowers’, has been cultivated for approximately 2000 years in China. Paeonia. ostii (T. Hong et J. X. Zhang) is a medium-sized perennial shrub in the family of Paeoniaceae, native to central China, and its grand flowers have particular significance in culture and history. Current P. ostii ‘Fengdan’ is planted across hundred of thousands acres, providing great economic value; it is also the parental species of thousands of varieties of modern cultivated peony, P. suffruticosa. After eight years effort, the first chromosome-level genome sequence of tree peony P. ostii, which has the largest chromosome (&gt; 12.28Gb)of any sequenced plant to date, has been successfully built. This project provides valuable data for better understanding the evolution and formation of plant giant genome and chromosome, and for tree peonies breeding and industries.
DOI: 10.26036/cnp0003148
title: Root-inhabiting bacteriome of the perennial sweet sorghum under field growth

description: In this study, comparative analysis of the bacterial communities in the root samples was performed between a perennial sweet sorghum cultivar NaPBS778 (simply N778) and its control lines TP60 by 16S ribosomal RNA gene (16S rDNA) V5-V7 variable region amplicon deep sequencing via Illumina MiSeq platform. The obtained sequence information allowed us to assess the composition, diversity of bacterial communities inhabiting the root of the perennial sweet sorghum.
DOI: 10.26036/cnp0003006
title: The endophytes of invasive clonal plant Wedelia trilobata

description: Amplicon sequencing of endophytic bacteria and fungi of stems in invasive clonal plant Wedelia trilobata from four different geographical latitudes was obtained using Illumina Novaseq 6000 platform to obtain paired-end (PE) reads. Amplification of the V3–V4 region of bacterial rRNA genes was completed using the universal primers (341F: 5’- CCTACGGGNGGCWGCAG-3’; 806R: 5’-GGACTACHVGGGTWTCTAAT-3’). The ITS2 region of fungal rRNA genes was amplified with ITS1 and ITS2 primer (ITS1F: 5’- CTTGGTCATTTAGAGGAAGTAA-3’; ITS2R: 5’-TCCTCCGCTTATTGATATGC-3’). The endophytes of invasive clonal plant Wedelia trilobata were from four different geographical latitudes, (1) Wenzhou City (WZ: 27.919617N, 120.698494E), Zhejiang Province, (2) Quanzhou City (QZ: 24.901539N, 118.616325E), Fujian Province, (3) Zhanjiang City (ZhJ: 21.270611N, 110.351982E), Guangdong Province and (4) Sanya City (SY: 18.28169N, 109.508509E), Hainan Province.
DOI: 10.26036/cnp0003168
title: Transcriptomic response of a toxin-producing dinoflagellate P. lima to light stress

description: Transcriptomic response of a toxin-producing dinoflagellate P. lima to light stress
DOI: 10.26036/cnp0003180
title: mRNA vaccine protects against Omicron infection in diet-induced obese mice through boosting host innate antiviral responses

description: RNA-seq data of mouse lung tissues, collected 2 days after inoculated with Omicron BA.1 (1x10^3 PFU in 20ul PBS). The samples included 6 vaccinated lean mice (vaccinated with BioNtech before virus challenge), 6 vaccinated obese mice (vaccinated with BioNtech before virus challenge), 5 unvaccinated lean mice, and 5 unvaccinated obese mice.
DOI: 10.26036/cnp0003488
title: NbCIPK25 overexpressing Arabidopsis

description: The transcriptome data of Nitraria billardieri CIPK25 overexpressing Arabidopsis under salt stress
DOI: 10.26036/cnp0003316
title: Age Related Alterations in Metabolome and Microbiome in Giant Pandas

description: It is very important to carry out metabolomics and gut microbiome research of captive giant pandas at different age stages for understanding the physiological development characteristics and dietary change patterns, accordingly making targeted breeding and management strategies for giant pandas. In this study, the fecal samples of 44 captive giant pandas were divided into four age groups: Cub (&lt;2 years), Young (3-7 years), Adult (11-18 years), and Old (&gt;20 years). Metabolomics, 16S rRNA sequencing, and metagenomic sequencing were performed to construct the fecal metabolomics profile of giant pandas at different age stages, aiming to identify potential biomarkers and gut microbiota related to the growth and development of giant pandas and reveal their interactions. Giant pandas; Metabolomics;16S rRNA; Metagenomics; Age
DOI: 10.26036/cnp0002626
title: Simultaneous detection of chromosome abnormality in patients receiving preimplantation genetic testing for monogenic diseases

description: Here we report a novel PGT-A/M procedure allowing simultaneous detection of monogenic diseases and chromosomal abnormalities in one experiment. Library was prepared in a special way that multiplex polymerase chain reaction (PCR) was integrated into the process of whole genome amplification. The resulting library was used for one-step low-pass whole-genome sequencing (WGS) and high-depth target enrichment sequencing (TES). The TAGs-seq PGT-A/M was first validated with genomic DNA (gDNA) and the multiple displacement amplification (MDA) products of a cell line and the sequential data was stored in this databas.
DOI: 10.26036/cnp0003352
title: Cuochuolong Lake Sediment Metagenome

description: Cuochuolong Lake Sediment Metagenome, include NGS and PacBio HiFi raw data.
DOI: 10.26036/cnp0003502
title: ScRNA-seq analysis for neonatal and adult thymus-derived CD4 T cells

description: ScRNA-seq analysis for neonatal and adult thymus-derived CD4 T cells
DOI: 10.26036/cnp0003481
title: Hemihydmus musculuse calcium sulfate_n-hydroxyapatite combined with metformin promotes osteogenesis in vitro and in vivo

description: Mouse transcriptome sequencing analysis
DOI: 10.25921/r9hp-8352
title: ES60 Water Column Sonar Data Collected During EBS13AK
DOI: 10.26036/cnp0001245
title: The relationship between bacteria of dfferent species of deep sea conches and environment

description: Compare the bacterium in different parts of different species of deep sea conches, and explore their functions and their relationship with the environment
DOI: 10.26036/cnp0003408
title: Alpaca PBMC single cell mRNA sequencing

description: single cell sequencing of H5N1-HA stimulated Alpaca PBMC
DOI: 10.26036/cnp0003543
title: Hippophae tibetana genome

description: We combined Pacbio Hifi platform and Hi-C technology to assemble a 1,452.75 Mb genome of Hippophae tibetana
DOI: 10.26036/cnp0001292
title: 病原体宏基因组二代测序诊断试剂质量控制与评价

description: 病原宏基因组学已被应用于传染病诊断，快速鉴定了COVID-19的病原体SARS-CoV-2。然而，对该方法学的全面性能评估的大规模多中心研究仍然缺乏。我们设计了由30种微生物组成的专用病原参考品，与17个独立实验室联合研究，对该技术进行了病原宏基因组二代测序诊断试剂的性能评价。
DOI: 10.26036/cnp0003273
title: MegaBOLT Demo Data

description: MegaBOLT demo data, including WGS and WES data.
DOI: 10.26036/cnp0003456
title: Curcuma longa Genome

description: The Genome of Turmeric
DOI: 10.26036/cnp0003267
title: LED irradiation delays postharvest senescence in pakchoi by regulating amino acid metabolism

description: Low-level white light-emitting diode (LED) irradiation can postpone postharvest senescence in pakchoi, however, the effect on postharvest amino acid metabolism is poorly understood. In this study, metabolomic and transcriptomic data were used to investigate amino acid metabolism in LED-treated pakchoi. Results indicated that LED irradiation had a considerable effect on the metabolism of several amino acids (histidine, cysteine and methionine, tryptophan, glycine, serine and threonine, lysine, and arginine and proline), with glycine, serine, and threonine metabolism being the most affected. The level of gene expression and metabolites related to the affected amino acids in LED-treated samples was closer to the levels in initial samples. LED irradiation was also found to increase soluble protein content, and decrease protease activity and amino acids level at 5 d of storage. These results indicate that the primary mechanism by which white LED irradiation delays pakchoi senescence is through the regulation of amino acid metabolism.
DOI: 10.26036/cnp0003510
title: PM2.5 and alveolar macrophages

description: After 7 consecutive days of PM2.5 or PBS treatment, the gene changes of alveolar macrophages were detected at an interval of 21 days. The wild-type mice and IL-33 ko mice were treated with PM2.5 for 7 consecutive days at an interval of 21 days to detect the gene changes of alveolar macrophages.
DOI: 10.26036/cnp0002793
title: 葫芦藓基因组测序

description: 葫芦藓（Funaria hygrometrica）基因组测序数据
DOI: 10.26036/cnp0003289
title: Metabolome of Arabidopsis seedlings treated with Lipopeptides

description: The 12-h metabolome of Bacillus subtilis Lipopeptidesmycosubtilin homologue-treated Arabidopsis seedlings
DOI: 10.26036/cnp0002300
title: Microbiota of Bupleurum

description: This project deposits the microbiome data of the root of Bupleurum spp., including the bulk soil, rhizosphere, rhizoplane and so on.
DOI: 10.26036/cnp0003492
title: Use of nanopore sequencing to characterize tilapia lake virus (TiLV) circulating in farms and hatcheries in Peru

description: Genomic surveillance of pathogens in Aquaculture. Tilapia lake virus detection and Segment 3 sequencing using Oxford Nanopore Technology.
DOI: 10.26036/cnp0003310
title: Conceptual of the transcriptome and chromatin accessibility within single cell

description: Conceptual of the transcriptome and chromatin accessibility within single cell
DOI: 10.26036/cnp0003362
title: Root-associated fungal microbiota of the perennial sweet sorghum cultivar under field growth

description: In this study, comparative analysis of the fungal microbiota in the rhizosphere soils and bulk soils was performed between a perennial sweet sorghum cultivar NaPBS778 (simply N778) and its control lines TP60 and TP213 by fungal rRNA gene internal transcribed spacer 1 (ITS1) amplicon deep sequencing via Illumina MiSeq platform. The obtained sequence information allowed us to assess the impact of the perennial sweet sorghum line on the rhizosphere and root-inhabiting fungal communities.
DOI: 10.26036/cnp0001309
title: Original RNA-seq data

description: The original RNA-seq data for subcutaneous and intramuscular adipose tissue
DOI: 10.26036/cnp0003469
title: Transcriptome data of Eucommia ulmoides infected by Fusarium oxysporum

description: Transcriptome data of Eucommia ulmoides infected by Fusarium oxysporum
DOI: 10.26036/cnp0003491
title: organelle genome of Indigofera amblyantha and Indigofera pseudotinctoria

description: The sequencing of the whole chloroplast and mitochondrial genomes of Indigofera amblyantha and Indigofera pseudotinctoria
DOI: 10.26036/cnp0003164
title: Female ginseng (Angelica sinensis) genome

description: Chromosome-level assembly of Angelica sinensis reveals biosynthesis and evolution of coumarins
DOI: 10.26036/cnp0003505
title: Holobiont of Conchocele bisecta in deep-sea hydrothermal vents

description: To understand the symbiotic relationship between the Conchocele bisecta and its bacterial symbiont, the hologenome was assembled on the basis of genomic, metagenomic and transcriptomic data sets.
DOI: 10.26036/cnp0003446
title: Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc) cultivar 'Tsukuba'

description: Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc) cultivar 'Tsukuba'
DOI: 10.26036/cnp0003511
title: G400C CoolMPS

description: HBRR(Human Brain Reference RNA) test,used MGIEasy Small RNA Library Prep
DOI: 10.26036/cnp0003518
title: Eremochloa ophiuroides (Munro) Hack on cold stress

description: In this study, Eremochloa ophiuroides (Munro) Hack was taken as the research object, and cold stress was applied to it in different ways. The molecular mechanism of Eremochloa ophiuroides (Munro) Hack under low temperature stress was studied by transcriptome analysis, and the differential expression genes of Eremochloa ophiuroides (Munro) Hack under cold stress were screened by combining key physiological indicators.
DOI: 10.26036/cnp0003466
title: Abnormal prostate microbiota composition is associated with experimental autoimmune prostatitis / depression in rats

description: Microbiota play essential roles in the pathogenesis of prostatitis and depression. However, the changes in prostate microbiota have not yet been explored in rats with prostatitis / depression. This study aimed to investigate the changes of prostate microbiota in rats with prostatitis / depression. Rats with experimental autoimmune prostatitis ( EAP ) complicated with depression were constructed through injection of rat prostate antigen with immunoadjuvants followed by application of chronic unpredictable mild stress ( CUMS ). The rats were subjected to inflammatory factor detection and behavioral testing to confirm the establishment of the model. Subsequently, the prostate microbiota was assayed in the rats and compared by 16S rRNA gene sequencing. A rat model of EAP complicated with depression was established and confirmed by increases in inflammatory factor as well as the occurrence of depressive - like behaviors. EAP / CUMS significantly altered the richness, evenness, and composition of prostate microbiota. Forty - six taxonomic biomarkers for prostate microbiota were enriched in rats with EAP / depression and exhibited statistically significant and biologically consistent differences. Metabolomics profiling revealed that EAP / depression was associated with reductive acetyl coenzyme A pathway, L - lysine fermentation to acetate and butanoate, protein N - glycosylation and purine nucleobases degradation I, which is regulated by DCE29, Nocardioes, Helicobacter and Dorea. Findings from the study demonstrate the existence of abnormal prostate microbiota in EAP complicated with depression and may be helpful in the treatment of comorbid diseases of prostatitis and depression.
DOI: 10.57778/9xbe-kr37
title: Stable isotope values of live and stranded dolphins and manatees from the northern Gulf of Mexico
DOI: 10.5517/ccdc.csd.cc29wxmr
title: CCDC 2141995: Experimental Crystal Structure Determination

description: Related Article: Lulu Shen, Zitong Lin, Bin Guo, Weiwei Zi|2022|Nat. Synth.|1|883|doi:10.1038/s44160-022-00150-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29wxns
title: CCDC 2141996: Experimental Crystal Structure Determination

description: Related Article: Lulu Shen, Zitong Lin, Bin Guo, Weiwei Zi|2022|Nat. Synth.|1|883|doi:10.1038/s44160-022-00150-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.