cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1456119.v1
title: Plant regeneration through direct somatic embryogenesis, antioxidant properties and metabolite profiles of <i>Swertia corymbosa</i> (Griseb.) Wight <i>ex</i> C.B. Clarke

description: A protocol for induction of direct somatic embryogenesis and subsequent plant regeneration for the medicinally important and endangered plant of <i>Swertia corymbosa</i> has been developed for the first time. In the present study, <i>in-vitro</i> derived leaf explants were cultured on Murashige and Skoog (MS) medium supplemented with 2, 4-dichlorophenoxyacetic acid (2, 4-D) individually and in combination with cytokinins for its effectiveness to induce the differentiation of somatic embryos. The antioxidant activities of methanolic extracts from non-embryonic callus (NEC), pre-embryoid masses (PEM), somatic embryos at globular stage (SEG), somatic embryos at heart-shaped stage (SEHS) and cotyledonary embryos (SEC) of <i>S. corymbosa</i> were evaluated using three <i>in vitro</i> assays: scavenging of free radicals (DPPH and ABTS) and ferric reducing antioxidant test. In all cases, the methanolic extract from SEG demonstrated better antioxidant activity than those taken from other tested samples. Higher amounts of swertianin (1), methylswertianin (2) and 1, 2, dihydroxy-6-methoxyxanthone-8-O-β-D-xylopyranosyl (3) were found in SEG stage followed by SEHS and PEM when compared to NEC and SEC.
DOI: 10.6084/m9.figshare.1456175.v3
title: Reanalyses done for the blog post "Modest reproducibility success"

description: These reanalysis accompany the blog post "Modest reproducibility success" The figures in the following locations: <strong>Fig1</strong>: github-importDojj9C.zip/figures/sort_by_entropy.png <strong>Fig2:</strong> github-importDojj9C.zip/figures/802761433193085.89_entropy_2.44_1.83_loci_0_to_49.png <strong>Fig3</strong>: github-importjalDCs.zip/figures/148851433838626.65_entropy_0.73_0.00_loci_100_to_149.png <strong>Fig4</strong>: github-importjalDCs.zip/figures/752761434054805.63_no_rp_low_entropy_concat_ent_0.99_0.15.png <strong>The notebook for the Philippe reanalysis:</strong> http://nbviewer.ipython.org/github/szitenberg/philippe2009/blob/master/Philippe2009.ipynb <strong>The notebook for the Whelan reanalysis:</strong> http://nbviewer.ipython.org/github/szitenberg/Whelan2015/blob/master/Whelan2015_Dataset12.ipynb
DOI: 10.6084/m9.figshare.1456088
title: Population dynamics of <i>Turbo militaris</i> (Gastropoda: Turbinidae) on rocky shores in a subtropical marine park: implications for management

description: Understanding the relative impacts of harvesting across an area such as a marine park is vital if the goals of fisheries management are to be met. Given their accessibility, densities of targeted intertidal turbinids should be relatively simple to quantify; however, natural spatial and temporal variability in these populations has hampered this effort. This study aimed to quantify short-term population dynamics of <i>Turbo militaris</i> in relation to current zoning regulations and accessibility. While our results reflected the variability found by other studies, we also detected significantly lower densities at a headland where harvesting is known to occur, and found a trend towards denser aggregations at more remote locations. Importantly, we found that densities at some locations were so low that current fisheries bag limits may be ineffective for protecting populations at local scales. Comparisons between study sites suggest a combination of no-take zoning and inaccessibility may provide the most effective protection for this species. However, a greater understanding of the wider impacts of harvesting, and processes affecting recovery, are essential to ensure sustainable management of this fishery.
DOI: 10.6084/m9.figshare.1456088.v2
title: Population dynamics of <i>Turbo militaris</i> (Gastropoda: Turbinidae) on rocky shores in a subtropical marine park: implications for management

description: Understanding the relative impacts of harvesting across an area such as a marine park is vital if the goals of fisheries management are to be met. Given their accessibility, densities of targeted intertidal turbinids should be relatively simple to quantify; however, natural spatial and temporal variability in these populations has hampered this effort. This study aimed to quantify short-term population dynamics of <i>Turbo militaris</i> in relation to current zoning regulations and accessibility. While our results reflected the variability found by other studies, we also detected significantly lower densities at a headland where harvesting is known to occur, and found a trend towards denser aggregations at more remote locations. Importantly, we found that densities at some locations were so low that current fisheries bag limits may be ineffective for protecting populations at local scales. Comparisons between study sites suggest a combination of no-take zoning and inaccessibility may provide the most effective protection for this species. However, a greater understanding of the wider impacts of harvesting, and processes affecting recovery, are essential to ensure sustainable management of this fishery.
DOI: 10.6084/m9.figshare.1456088.v1
title: Population dynamics of <i>Turbo militaris</i> (Gastropoda: Turbinidae) on rocky shores in a subtropical marine park: implications for management

description: Understanding the relative impacts of harvesting across an area such as a marine park is vital if the goals of fisheries management are to be met. Given their accessibility, densities of targeted intertidal turbinids should be relatively simple to quantify; however, natural spatial and temporal variability in these populations has hampered this effort. This study aimed to quantify short-term population dynamics of <i>Turbo militaris</i> in relation to current zoning regulations and accessibility. While our results reflected the variability found by other studies, we also detected significantly lower densities at a headland where harvesting is known to occur, and found a trend towards denser aggregations at more remote locations. Importantly, we found that densities at some locations were so low that current fisheries bag limits may be ineffective for protecting populations at local scales. Comparisons between study sites suggest a combination of no-take zoning and inaccessibility may provide the most effective protection for this species. However, a greater understanding of the wider impacts of harvesting, and processes affecting recovery, are essential to ensure sustainable management of this fishery.
DOI: 10.17632/4754fk2tw7.1
title: Preference and WTP for Livestock Market Facilities – DCE Data

description: The data were collected in 2018 as part of a national study to elicit preferences and estimate willingness to pay (WTP) for small ruminant market facilities in Ethiopia. We used discrete choice experiments to elicit preferences from the 360 respondents across the three districts whereby we presented 12 choice situations to each of them and hence generated 4320 observations.
DOI: 10.6084/m9.figshare.1456086
title: A concentration-based approach to data classification for choropleth mapping

description: The choropleth map is a device used for the display of socioeconomic data associated with an areal partition of geographic space. Cartographers emphasize the need to standardize any raw count data by an area-based total before displaying the data in a choropleth map. The standardization process converts the raw data from an absolute measure into a relative measure. However, there is recognition that the standardizing process does not enable the map reader to distinguish between low–low and high–high numerator/denominator differences. This research uses concentration-based classification schemes using Lorenz curves to address some of these issues. A test data set of nonwhite birth rate by county in North Carolina is used to demonstrate how this approach differs from traditional mean–variance-based systems such as the Jenks’ optimal classification scheme.
DOI: 10.6084/m9.figshare.1456061
title: Chemical Abundances of Red Giants in the Open Cluster NGC 2420 from APOGEE Observations

description: Poster PDF
DOI: 10.6084/m9.figshare.1456086.v2
title: A concentration-based approach to data classification for choropleth mapping

description: The choropleth map is a device used for the display of socioeconomic data associated with an areal partition of geographic space. Cartographers emphasize the need to standardize any raw count data by an area-based total before displaying the data in a choropleth map. The standardization process converts the raw data from an absolute measure into a relative measure. However, there is recognition that the standardizing process does not enable the map reader to distinguish between low–low and high–high numerator/denominator differences. This research uses concentration-based classification schemes using Lorenz curves to address some of these issues. A test data set of nonwhite birth rate by county in North Carolina is used to demonstrate how this approach differs from traditional mean–variance-based systems such as the Jenks’ optimal classification scheme.
DOI: 10.6084/m9.figshare.1456086.v1
title: A concentration-based approach to data classification for choropleth mapping

description: The choropleth map is a device used for the display of socioeconomic data associated with an areal partition of geographic space. Cartographers emphasize the need to standardize any raw count data by an area-based total before displaying the data in a choropleth map. The standardization process converts the raw data from an absolute measure into a relative measure. However, there is recognition that the standardizing process does not enable the map reader to distinguish between low–low and high–high numerator/denominator differences. This research uses concentration-based classification schemes using Lorenz curves to address some of these issues. A test data set of nonwhite birth rate by county in North Carolina is used to demonstrate how this approach differs from traditional mean–variance-based systems such as the Jenks’ optimal classification scheme.
DOI: 10.6084/m9.figshare.1456061.v1
title: Chemical Abundances of Red Giants in the Open Cluster NGC 2420 from APOGEE Observations

description: Poster PDF
DOI: 10.6084/m9.figshare.1455963.v1
title: Examples data files for phconvert

description: These a example data files in different formats that can be converted to Photon-HDF5 format using phconvert.
DOI: 10.17632/2zw5k9xb94.1
title: Retrospective Analysis of Laboratory Abnormalities in Patients with Preexisting Liver and Hematologic Diseases Prescribed Terbinafine for Onychomycosis

description: Demographic Table
DOI: 10.6084/m9.figshare.1455963.v2
title: Examples data files for phconvert

description: Example data files in different formats that can be converted to Photon-HDF5 format using phconvert.
DOI: 10.6084/m9.figshare.1455963.v3
title: Examples data files for phconvert

description: Example data files in different formats that can be converted to Photon-HDF5 format using phconvert.
DOI: 10.6084/m9.figshare.1454606
title: Richmond Pharmacology Limited - Database of Study Records - ClinicalTrials.gov - WHO ICTRP

description: Version 1.0. Search query: https://clinicaltrials.gov/ct2/results?term=Richmond+Pharmacology+limited Date: June 19, 2015. ---
DOI: 10.6084/m9.figshare.1454606.v2
title: Richmond Pharmacology Limited - Database of Study Records - ClinicalTrials.gov - WHO ICTRP

description: Version 1.0. Search query: https://clinicaltrials.gov/ct2/results?term=Richmond+Pharmacology+limited Date: June 19, 2015. ---
DOI: 10.6084/m9.figshare.1454606.v1
title: Richmond Pharmacology Limited - Database of Study Records - ClinicalTrials.gov - WHO ICTRP

description: Version 1.0. Search query: https://clinicaltrials.gov/ct2/results?term=richmond+pharmacology&show_flds=Y&show_down=Y --- Limited
DOI: 10.6084/m9.figshare.1455963
title: Examples data files for phconvert

description: Example data files in different formats that can be converted to Photon-HDF5 format using phconvert.
DOI: 10.6084/m9.figshare.1454597
title: Playback response data for Distress calls of a fast-flying bat (Molossus molossus) provoke inspection flights but not cooperative mobbing

description: These data are for the manuscript entitled, "Distress calls of a fast-flying bat (<em>Molossus molossus)</em> provoke inspection flights but not mobbing" by G Carter et al. Variable names Day= day in August 2014 Roost proximity= how close speaker was to roost session= playback and recording session time= hour and minute at start of playback treatment= distress calls or noise playback sequence= which distress call or noise stimulus was played (n=12) c molossus= number of passes of Molossus molossus during 1 min silent period c social= number of passes with social calls of Molossus molossus during 1 min silent period c saccopteryx= number of passes of Saccopteryx bilineata during 1 min silent period c other= number of passes of other bat species t molossus, etc= number of passes of Molossus during 1 min *playback* period, etc diff molossus, etc= (t molossus) - (c molossus), etc total molossus, etc= (t molossus) + (c molossus), etc
DOI: 10.6084/m9.figshare.1455478.v1
title: Seattle Street Clock Database

description: This spreadsheet contains three tables: Clocks, Owners, and Evidence - Clocks tab's name column and Owners tab's corporation column keys in Evidence. - Evidence is a list of every unique fact I have via newspaper, photograph, document, or otherwise about when a clock was in a particular location, and who owned it at that time. v1 has 1033 pieces of evidence. Please contact me if you have additions or find errors in my data. I will be refreshing this periodically. I constantly find new resources. Along with my friend Paul Middents we have proven the connection between many owners, and I know that there will be more discoveries to show which clocks were later owned by another jeweler.<br><br>A few notes on fields: <br>- In Evidence, "Var_Year" indicates a +/- value on the Source_Year. Empty means exact. 0 means it was the first year that the clock was at that location. - If the Source_Type is Photograph, Source_ID has a value, and there is no URL, then I have the photo on my harddrive but can't post it. - In Clocks, if the Unique field is Yes, then I'm sure that this clock cannot be matched with any other clocks in the list. There are 114 clocks in the list which is excessive. It should be down closer to 60. - There are a few large sign clocks in the database. They are all in downtown. The O. B. McClintocks definitely belong in the database, and the few other signs are described that way in the Notes field of both Evidence and Clocks. On the linked page I will maintain a list of open questions, and areas I know I need to work on.
DOI: 10.6084/m9.figshare.1455990.v6
title: A Functional Approach to Violent Radicalization. Proposing a Model

description: A paradox in the study of violent radicalization is that while each of the empirical findings can be explained from multiple theories, very few theories can explain a relevant number of these findings simultaneously. In this paper functional behavior assessment is applied to violent radical behavior, trying to find out the factors responsible for its initial learning and subsequent maintenance. Specifically, a radicalization model is proposed, which can explain a wide range of observed phenomena, accommodate apparent exceptions, and obtain testable consequences. It also allows challenging some firmly rooted ideas, as the alleged existence of aggressive influence practices, or brainwashing. Finally, the model is also able to provide valuable predictions for subsequent investigation, such as those related to the reversibility of the process of radicalization.
DOI: 10.6084/m9.figshare.1455478.v2
title: Seattle Street Clock Database

description: This spreadsheet contains three tables: Clocks, Owners, and Evidence - Clocks tab's name column and Owners tab's corporation column keys in Evidence. - Evidence is a list of every unique fact I have via newspaper, photograph, document, or otherwise about when a clock was in a particular location, and who owned it at that time. v1 has 1033 pieces of evidence. Please contact me if you have additions or find errors in my data. I will be refreshing this periodically. I constantly find new resources. Along with my friend Paul Middents we have proven the connection between many owners, and I know that there will be more discoveries to show which clocks were later owned by another jeweler.<br><br>A few notes on fields: <br>- In Evidence, "Var_Year" indicates a +/- value on the Source_Year. Empty means exact. 0 means it was the first year that the clock was at that location. - If the Source_Type is Photograph, Source_ID has a value, and there is no URL, then I have the photo on my harddrive but can't post it. - In Clocks, if the Unique field is Yes, then I'm sure that this clock cannot be matched with any other clocks in the list. There are 114 clocks in the list which is excessive. It should be down closer to 60. - There are a few large sign clocks in the database. They are all in downtown. The O. B. McClintocks definitely belong in the database, and the few other signs are described that way in the Notes field of both Evidence and Clocks. On the linked page I will maintain a list of open questions, and areas I know I need to work on.
DOI: 10.6084/m9.figshare.1455963.v7
title: Examples data files for phconvert

description: Example data files in different formats that can be converted to Photon-HDF5 format using phconvert.
DOI: 10.6084/m9.figshare.1455963.v6
title: Examples data files for phconvert

description: Example data files in different formats that can be converted to Photon-HDF5 format using phconvert.
DOI: 10.6084/m9.figshare.1454597.v2
title: Playback response data for Distress calls of a fast-flying bat (Molossus molossus) provoke inspection flights but not cooperative mobbing

description: These data are for the manuscript entitled, "Distress calls of a fast-flying bat (<em>Molossus molossus)</em> provoke inspection flights but not mobbing" by G Carter et al. Variable names Day= day in August 2014 Roost proximity= how close speaker was to roost session= playback and recording session time= hour and minute at start of playback treatment= distress calls or noise playback sequence= which distress call or noise stimulus was played (n=12) c molossus= number of passes of Molossus molossus during 1 min silent period c social= number of passes with social calls of Molossus molossus during 1 min silent period c saccopteryx= number of passes of Saccopteryx bilineata during 1 min silent period c other= number of passes of other bat species t molossus, etc= number of passes of Molossus during 1 min *playback* period, etc diff molossus, etc= (t molossus) - (c molossus), etc total molossus, etc= (t molossus) + (c molossus), etc
DOI: 10.6084/m9.figshare.1454588
title: Still heart encodes a structural HMT, SMYD1b, with chaperone-like function during fast muscle sarcomere assembly

description: Raw data images for our manuscript "Still heart encodes a structural HMT, SMYD1b, with chaperone-like function during fast muscle sarcomere assembly."
DOI: 10.6084/m9.figshare.1454588.v1
title: Still heart encodes a structural HMT, SMYD1b, with chaperone-like function during fast muscle sarcomere assembly

description: Raw data images for our manuscript "Still heart encodes a structural HMT, SMYD1b, with chaperone-like function during fast muscle sarcomere assembly."
DOI: 10.6084/m9.figshare.1454597.v1
title: Playback response data

description: These data are for the manuscript entitled, "Distress calls of a fast-flying bat (<em>Molossus molossus)</em> provoke inspection flights but not mobbing" by G Carter et al. Variable names Day= day in August 2014 Roost proximity= how close speaker was to roost session= playback and recording session time= hour and minute at start of playback treatment= distress calls or noise playback sequence= which distress call or noise stimulus was played (n=12) c molossus= number of passes of Molossus molossus during 1 min silent period c social= number of passes with social calls of Molossus molossus during 1 min silent period c saccopteryx= number of passes of Saccopteryx bilineata during 1 min silent period c other= number of passes of other bat species t molossus, etc= number of passes of Molossus during 1 min *playback* period, etc diff molossus, etc= (t molossus) - (c molossus), etc total molossus, etc= (t molossus) + (c molossus), etc
DOI: 10.6084/m9.figshare.1455478.v3
title: Seattle Street Clock Database

description: This spreadsheet contains three tables: Clocks, Owners, and Evidence - Clocks tab's name column and Owners tab's corporation column keys in Evidence. - Evidence is a list of every unique fact I have via newspaper, photograph, document, or otherwise about when a clock was in a particular location, and who owned it at that time. v1 has 1033 pieces of evidence. Please contact me if you have additions or find errors in my data. I will be refreshing this periodically. I constantly find new resources. Along with my friend Paul Middents we have proven the connection between many owners, and I know that there will be more discoveries to show which clocks were later owned by another jeweler.<br><br>A few notes on fields: <br>- In Evidence, "Var_Year" indicates a +/- value on the Source_Year. Empty means exact. 0 means it was the first year that the clock was at that location. - If the Source_Type is Photograph, Source_ID has a value, and there is no URL, then I have the photo on my harddrive but can't post it. - In Clocks, if the Unique field is Yes, then I'm sure that this clock cannot be matched with any other clocks in the list. There are 114 clocks in the list which is excessive. It should be down closer to 60. - There are a few large sign clocks in the database. They are all in downtown. The O. B. McClintocks definitely belong in the database, and the few other signs are described that way in the Notes field of both Evidence and Clocks. On the linked page I will maintain a list of open questions, and areas I know I need to work on.
DOI: 10.6084/m9.figshare.1454539
title: Example areal network

description: Points for areal network in an example subject
DOI: 10.6084/m9.figshare.1454539.v2
title: Example areal network

description: Points for areal network in an example subject
DOI: 10.6084/m9.figshare.1454539.v1
title: Example areal network

description: Points for areal network in an example subject
DOI: 10.6084/m9.figshare.1454538.v2
title: Automated processing of data for supertree construction

description: Talk given to Evolution2015 on the new autoprocessing functionality of the STK. This involves collecting nomenclature and taxonomic information on the OTUs to create a consistent naming scheme, and following the normal processing.