cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1290419.10fu
title: SH1290419.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.vkmyua
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus racemosus",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011082-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15878924
title: NESTOR (NESTing ORganization) forcings

description: Forcings files, mostly in NetCDF format, used to prepare MAR (Modèle Atmosphérique Régional) forcings using the NESTOR (NESTing ORganization) utility program. The files provide notably topography and vegetation at high resolution. All NetCDF files have been converted into NetCDF-4 with maximum compression to minimize the size as much as possible.
DOI: 10.5281/zenodo.15878925
title: NESTOR (NESTing ORganization) forcings

description: Forcings files, mostly in NetCDF format, used to prepare MAR (Modèle Atmosphérique Régional) forcings using the NESTOR (NESTing ORganization) utility program. The files provide notably topography and vegetation at high resolution. All NetCDF files have been converted into NetCDF-4 with maximum compression to minimize the size as much as possible.
DOI: 10.15468/dl.34pghk
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea linearifolia"
 ]
}

 The dataset includes 12 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011083-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/vxdlev
title: Bureauonderzoek, Verkennend en Karterend Booronderzoek Archeologie Plangebied Koningsweg 5 te Wehl, Gemeente Doetinchem
title: Plangebied Koningsweg 5 te Wehl, Gemeente Doetinchem

description: Hamaland Advies heeft in opdracht van TeamgameZ een archeologisch bureauonderzoek en karterend booronderzoek uitgevoerd voor het plangebied aan de Koningsweg 5 te Wehl, ten behoeve van de realisatie van een outdoorcentrum. Het plangebied heeft een oppervlakte van circa 2,8 hectare. De toekomstige verstoringsdiepte is nog niet bekend.
DOI: 10.15468/dl.nmxf67
title: Occurrence Download

description: A dataset containing 42068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is Ichthyology Collection - Royal Ontario Museum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 42068 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002835-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdwj4k
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orbea variegata (L.) Haw."
 ]
}

 The dataset includes 376 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020290-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n97e6s
title: Occurrence Download

description: A dataset containing 561852542 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 561852542 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002954-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syskox
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056016-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drmuvb
title: Occurrence Download

description: A dataset containing 1350136193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1350136193 records from 8567 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111681-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33bc4k
title: Occurrence Download

description: A dataset listing the 1658 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-55.96282 -27.423,-55.87775 -27.423,-55.87775 -27.35462,-55.96282 -27.35462,-55.96282 -27.423))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 1658 records were derived from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015761-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmhk5n
title: Occurrence Download

description: A dataset containing 1600658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Epicallima argenticinctella Clemens, 1860, Taxillus chinensis (DC.) Danser, Balanium stygium Wallr., Dothidea sambuci (Pers.) Fr., Phaeohelotium extumescens (P.Karst.) Dennis, Sayornis saya (Bonaparte, 1825), Spilomyia alcimus (Walker, 1849), Euricania ocella (Walker, 1851), Tetraphala collaris (Crotch, 1876), Drasteria divergens Behr, 1870, Eupoecilia citrinana Razowski, 1960, Pleurotroppopsis hirta (Kamijo, 1977), Dermatopelte budensis Erdos & Novicky, 1951, Diaspis chilensis Cockerell, 1895, Basicladus tracyi (Jones, 1911), Abrothallus halei Pérez-Ort., Suija, D.Hawksw. & R.Sant., Sclerococcum lobariellum (Nyl.) Ertz & Diederich, Corticifraga santessonii Zhurb. & Zavarzin, Arthonia subconveniens Nyl., Polycoccum hymeniicola (Berk. & Broome) Zhurb., Capronia epilobarina S.Y.Kondr. & D.J.Galloway, Nectriopsis lecanodes (Ces.) Diederich & Schroers, Cladophialophora parmeliae (Etayo & Diederich) Diederich & Unter., Roselliniella ramirezii Etayo, Lichenopeltella lobariae Etayo & Diederich, Enterographa punctata Ertz & Diederich, Monodictys fuliginosa Etayo, Xenonectriella streimannii (S.Y.Kondr., Coppins & D.J.Galloway) Rossman, Stigmidium lobariae Zhurb. & Etayo, Chloroepilichen rolfii Etayo, Niesslia lobariae Etayo & Diederich, Unguiculariopsis lobariella S.Y.Kondr. & D.J.Galloway, Pronectria fissuriprodiens Etayo, Plectocarpon lambinonii Diederich & Etayo, Trichonectria setadpressa Etayo, Clossiana astarte (Doubleday), Parnassius smintheus Doubleday, 1847, Octosporea muscaedomesticae Flu, 1911, Entomophthora muscae (Cohn) Fresen., Vibrio cholerae Pacini, 1854, Thelazia callipaeda Railliet & Henry, 1910, Loa loa, Campylobacter jejuni (Jones et al., 1931) Veron & Chatelain, 1973, Onchocerca volvulus Leuckart, 1893, Oreophrynella nigra Señaris, Ayarzagüena & Gorzula, 1994, Nomisia exornata (C.L.Koch, 1839), Antechinus arktos Baker, Mutton, Hines & Van Dyck, 2014, Scincus hemprichii Wiegmann, 1837, Liolaemus multimaculatus (Duméril & Bibron, 1837), Mnais pruinosa Selys, 1853)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1600658 records from 533 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015757-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15412590
title: Simulations used in: Material properties of biomolecular condensates emerge from nanoscale dynamics

description: Simulation inputs, subsampled trajectories, and outputs of lifetime calculations from paper "Material properties of biomolecular condensates emerge from nanoscale dynamics" (https://doi.org/10.1073/pnas.2424135122). Lifetime outputs are provided because these cannot be correctly calculated from the subsampled trajectoroies made available here.
description: This work was supported by the Swiss NSF (310030_197776, B.S.), the Novo Nordisk Foundation Challenge program REPIN (#NNF18OC0033926, B.S.), the Intramural Research Program of the National Institute of Diabetes and Digestive and Kidney Diseases at the NIH (R.B.B.), the Forschungskredit of the University of Zurich (N.G. and M.T.I.), the Ernst Hadorn Foundation (N.G.), and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska- Curie grant agreement ID 898228 (A.C.). We utilized the computational resources of Piz Daint, Alps, and Eiger at the CSCS Swiss National Supercomputing Centre, and of the NIH HPC Biowulf cluster (http://hpc.nih.gov).
DOI: 10.5281/zenodo.15412591
title: Simulations used in: Material properties of biomolecular condensates emerge from nanoscale dynamics

description: Simulation inputs, subsampled trajectories, and outputs of lifetime calculations from paper "Material properties of biomolecular condensates emerge from nanoscale dynamics" (https://doi.org/10.1073/pnas.2424135122). Lifetime outputs are provided because these cannot be correctly calculated from the subsampled trajectoroies made available here.
description: This work was supported by the Swiss NSF (310030_197776, B.S.), the Novo Nordisk Foundation Challenge program REPIN (#NNF18OC0033926, B.S.), the Intramural Research Program of the National Institute of Diabetes and Digestive and Kidney Diseases at the NIH (R.B.B.), the Forschungskredit of the University of Zurich (N.G. and M.T.I.), the Ernst Hadorn Foundation (N.G.), and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska- Curie grant agreement ID 898228 (A.C.). We utilized the computational resources of Piz Daint, Alps, and Eiger at the CSCS Swiss National Supercomputing Centre, and of the NIH HPC Biowulf cluster (http://hpc.nih.gov).
DOI: 10.15468/dl.u6p2p7
title: Occurrence Download

description: A dataset containing 2709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stylosanthes guianensis (Aubl.) Sw.",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 2709 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015763-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqwjds
title: Occurrence Download

description: A dataset listing the 42 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.16251 25.78141,-100.14692 25.78141,-100.14692 25.79381,-100.16251 25.79381,-100.16251 25.78141))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 42 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015762-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfx8qd
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Knipolegus nigerrimus (Vieillot, 1818)"
 ]
}

 The dataset includes 94 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015765-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15495839
title: Plasticity of the cytotoxic Nep1-like protein enables promiscuity in binding to its lipid receptor glycosylinositol phosphorylceramides

description: Raw data for the manuscript "Plasticity of the cytotoxic Nep1-like protein enables promiscuity in binding to its lipid receptor glycosylinositol phosphorylceramides".
DOI: 10.5281/zenodo.15495840
title: Plasticity of the cytotoxic Nep1-like protein enables promiscuity in binding to its lipid receptor glycosylinositol phosphorylceramides

description: Raw data for the manuscript "Plasticity of the cytotoxic Nep1-like protein enables promiscuity in binding to its lipid receptor glycosylinositol phosphorylceramides".
DOI: 10.5281/zenodo.15484620
title: Census of Gulf Stream Warm Core Ring formation from 2018 to 2023

description: This dataset consists of a census of warm core ring formation locations, times, and sizes from the Gulf Stream between 2018 and 2023. This work builds upon the following dataset: 

 

Gangopadhyay, A., Gawarkiewicz, G. (2020) Yearly census of Gulf Stream Warm Core Ring formation from 1980 to 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-05-06 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.810182.1 [access date]

 

In addition, it is related to two additional datasets containing warm core ring weekly tracking data: 

 

(i) Warm Core Ring trajectory information from 2011 to 2020 -- Silver et al. (2022a) (https://doi.org/10.5281/zenodo.6436380).

(ii) Warm Core Ring Trajectories in the Northwest Atlantic Slope Sea (2021-2023) – Porter et al. (2024) (https://doi.org/10.5281/zenodo.10392322)

The format of this data set is similar to the datasets mentioned above, and the following description is adapted from those. This dataset contains a yearly census of Gulf Stream Warm Core Ring formation from 2018 to 2023. This continuous census file contains the formation and demise times and locations, and the area at formation for warm core rings that lived a week or more. Each row represents a unique Warm Core Ring and is identified by a unique alphanumeric code 'WEyyyymmddA', where 'WE' represents a Warm Eddy (as identified in the analysis charts); 'yyyymmdd' is the year, month and day of formation; and the last character 'A' represents the sequential sighting of the eddies in a particular year. For example, the first ring formed in 2018, having a trailing alphabet of 'G', indicates that six rings were carried over from 2017, which are still observed on January 1, 2018. 

 

Creating the WCR tracking dataset follows the same methodology as the previously generated WCR census (Gangopadhyay et al., 2019, 2020). This census was created from Jenifer Clark’s Gulf Stream Charts. These charts show the location, extent, and temperature signature of currents (GS, shelf-slope front), warm and cold-core rings (WCRs and CCRs), other eddies, shingles, intrusions, and other water mass boundaries in the Gulf of Maine, over Georges Bank, and in the Middle Atlantic Bight. An example chart is shown in Figure 1a of Gangopadhyay et al. (2019). A year-long animation for these charts for 2017 is presented in the supporting information of Gangopadhyay et al. (2020) https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2019JC016033. The charts are generated 2-3 times a week from 2018 to 2023. Thus, we used approximately 624+ Charts for the 6 years of analysis. These charts were then reanalyzed between 75°W and 55°W using QGIS 2.18.16 (2016) and geo-referenced on a WGS84 coordinate system (Decker, 1986).
DOI: 10.5281/zenodo.15484621
title: Census of Gulf Stream Warm Core Ring formation from 2018 to 2023

description: This dataset consists of a census of warm core ring formation locations, times, and sizes from the Gulf Stream between 2018 and 2023. This work builds upon the following dataset: 

 

Gangopadhyay, A., Gawarkiewicz, G. (2020) Yearly census of Gulf Stream Warm Core Ring formation from 1980 to 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-05-06 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.810182.1 [access date]

 

In addition, it is related to two additional datasets containing warm core ring weekly tracking data: 

 

(i) Warm Core Ring trajectory information from 2011 to 2020 -- Silver et al. (2022a) (https://doi.org/10.5281/zenodo.6436380).

(ii) Warm Core Ring Trajectories in the Northwest Atlantic Slope Sea (2021-2023) – Porter et al. (2024) (https://doi.org/10.5281/zenodo.10392322)

The format of this data set is similar to the datasets mentioned above, and the following description is adapted from those. This dataset contains a yearly census of Gulf Stream Warm Core Ring formation from 2018 to 2023. This continuous census file contains the formation and demise times and locations, and the area at formation for warm core rings that lived a week or more. Each row represents a unique Warm Core Ring and is identified by a unique alphanumeric code 'WEyyyymmddA', where 'WE' represents a Warm Eddy (as identified in the analysis charts); 'yyyymmdd' is the year, month and day of formation; and the last character 'A' represents the sequential sighting of the eddies in a particular year. For example, the first ring formed in 2018, having a trailing alphabet of 'G', indicates that six rings were carried over from 2017, which are still observed on January 1, 2018. 

 

Creating the WCR tracking dataset follows the same methodology as the previously generated WCR census (Gangopadhyay et al., 2019, 2020). This census was created from Jenifer Clark’s Gulf Stream Charts. These charts show the location, extent, and temperature signature of currents (GS, shelf-slope front), warm and cold-core rings (WCRs and CCRs), other eddies, shingles, intrusions, and other water mass boundaries in the Gulf of Maine, over Georges Bank, and in the Middle Atlantic Bight. An example chart is shown in Figure 1a of Gangopadhyay et al. (2019). A year-long animation for these charts for 2017 is presented in the supporting information of Gangopadhyay et al. (2020) https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2019JC016033. The charts are generated 2-3 times a week from 2018 to 2023. Thus, we used approximately 624+ Charts for the 6 years of analysis. These charts were then reanalyzed between 75°W and 55°W using QGIS 2.18.16 (2016) and geo-referenced on a WGS84 coordinate system (Decker, 1986).
DOI: 10.25574/42387
title: Chandra X-ray Observatory ObsId 42387
DOI: 10.15468/dl.y3y3u3
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Leontocebus leucogenys (Gray, 1866)"
 ]
}

 The dataset includes 60 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015766-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8us7c3
title: Occurrence Download

description: A dataset containing 1083950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dermea padi (Alb. & Schwein.) Fr., Peniophora versicolor (Bres.) Sacc. & P.Syd., Satyrium pruni (Linnaeus, 1758), Scutiphora pedicellata, Conistra rubiginea (Denis & Schiffermüller), 1775, Conistra ligula (Esper, 1791), Selenia lunularia (Hübner), Dasychira fascelina Linnaeus, 1758, Acronicta aceris (Linnaeus, 1758), Opisthograptis luteolata (Linnaeus, 1758), Naenia typica Linnaeus, 1758, Xylesthia pruniramiella Clemens, 1859, Sphinx perelegans Edwards, 1874, Theria primaria (Haworth, 1809), Stenoma adoratrix Meyrick, 1925, Automeris denticulatus Le Conte, 1906, Automeris styx Lemaire, 1982, Hylesia paulex Dognin, 1922, Lobobunaea phaedusa Drury, 1782, Ectoedemia spinosella (Joannis, 1908) Bradley et al., 1972, Acronicta brumosa Guenée, 1852, Pteroptrix opaca Erdos, 1956, Blastothrix ilicicola Mercet, 1921, Encyrtus fuscus (Howard, 1881), Pteroptrix dimidiata Westwood, 1833, Psalmocharias querulus (Pallas, 1773), Phomopsis prunorum (Cooke) Grove, Diplodia tecta Berk. & Broome, Pezicula houghtonii (W.Phillips) J.W.Groves, Patellariopsis atrovinosa (A.Bloxam ex Curr.) Dennis, Valsa ceuthospora Cooke, Valsa laurocerasi Tul. & C.Tul., Trochila laurocerasi (Desm.) Fr., Lentinellus laurocerasi (Berk. & Broome) P.D.Orton, Ceuthospora lauri Grev., Calvisia punctulata Redtenbacher, 1908, Acleris rhombana (Denis & Schiffermüller), 1775, Rothschildia jorulla Westwood, 1854, Dasytes aeratus Stephens, 1830, Agekianella notatifemur (Hoffer, 1976), Pachyneuron erzurumicum Doganlar, 1986, Sylvia nisoria (Bechstein, 1792), Ophiognomonia padicola (Lib.) M.Monod, Phyllobius glaucus (Scopoli, 1763), Micropera padina (Pers.) Sacc., Phomopsis padina (Sacc.) Died., Phyllosticta sanguinea (Desm.) Sacc., Vibrissea leptospora (Berk. & Broome) W.Phillips, Pristiphora retusa (Thomson, 1871), Xanthia togata Esper)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1083950 records from 1453 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015759-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wesjwk
title: Occurrence Download

description: A dataset containing 11627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Pinus L."
 ]
}

 The dataset includes 11627 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007205-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgnbrf
title: Occurrence Download

description: A dataset containing 1924 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Koala Count"
 ]
}

 The dataset includes 1924 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007206-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.