cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc111314590
title: Greek Papyrus Fragment, PAP.000416

description: [Text Description:] Greek Papyrus Fragment ❧ [Text or Publication Number Note:] PAP.000416 ❧ [Medium:] Papyrus ❧ [Script Note:] Greek ❧ [Physical Object Description:] Papyrus Fragment ❧ [Physical Object Note:] Papyrus, ink
DOI: 10.15468/dl.ae8t4p
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "Geometry POLYGON((-55.21729 -27.09948,-46.86768 -27.09948,-46.86768 -21.45435,-55.21729 -21.45435,-55.21729 -27.09948))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Satrapa Strickland, 1844"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171030-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111313801
title: Latin Manuscript, MS.000568

description: [Text Description:] Latin Manuscript ❧ [Text or Publication Number Note:] MS.000568 ❧ [Medium:] Parchment ❧ [Script Note:] Latin ❧ [Physical Object Description:] A few leaves of a vellum manuscript. ❧ [Physical Object Note:] Vellum with ink, red and black (now oxidized to brown). ❧ [Physical Object Note:] Two leaves, widely spaced writing
DOI: 10.25549/inscriptifact-ouc111313806
title: Latin Manuscript, MS.000568

description: [Text Description:] Latin Manuscript ❧ [Text or Publication Number Note:] MS.000568 ❧ [Medium:] Parchment ❧ [Script Note:] Latin ❧ [Physical Object Description:] A few leaves of a vellum manuscript. ❧ [Physical Object Note:] Vellum with ink, red and black (now oxidized to brown). ❧ [Physical Object Note:] Two leaves, widely spaced writing
DOI: 10.15468/dl.ujceyg
title: Occurrence Download

description: A dataset containing 1041 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Podiceps auritus (Linnaeus, 1758)",
 "Year 2022-2022"
 ]
}

 The dataset includes 1041 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171022-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111313813
title: Syriac Palimpsest (?)

description: [Text Description:] Syriac Manuscript, perhaps palimpsest? ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 18.7 x 23 cm ❧ [Physical Object Note:] Vellum with ink, red and black ❧ [Physical Object Note:] Stiching on edges. Red dots in patterns.
DOI: 10.15468/dl.xf3yaa
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Pseudomyrmex tenuissimus (Emery, 1906)"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179351-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111117484
title: Temple administrative record, UT 1599-18

description: [Text Description:] Temple administrative record. ❧ [Text or Publication Number Note:] UT 1599-18 ❧ [Excavation Description:] Jokha ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Square thick clay tablet, uniform pink-orange color. LABEL: "1599" in black ink, "18" in red ink. Broken in two pieces and repaired. 4 x 3cm.
DOI: 10.25549/inscriptifact-ouc111117485
title: Temple administrative record, UT 1599-18

description: [Text Description:] Temple administrative record. ❧ [Text or Publication Number Note:] UT 1599-18 ❧ [Excavation Description:] Jokha ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Square thick clay tablet, uniform pink-orange color. LABEL: "1599" in black ink, "18" in red ink. Broken in two pieces and repaired. 4 x 3cm.
DOI: 10.15468/dl.b2cxpz
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DwcaExtension is http://rs.gbif.org/terms/1.0/DNADerivedData",
 "Geometry POLYGON((-176 4.5,-126 4.5,-126 10.5,-176 10.5,-176 4.5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171045-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111355977
title: Record, comestibles, KTU 4.751

description: [Text Description:] Ugaritic Tablet KTU 4.751 ❧ [Text or Publication Number Note:] KTU 4.751; KTU2 4.751; KTU3 4.751; CTU 4.751; CAT 4.751; RS 29.096; M 8212 = A 6170 ❧ [Excavation Description:] Found during excavations at Ras Shamra. ❧ [Medium:] Clay ❧ [Script Note:] Alphabetic Cuneiform
DOI: 10.25549/inscriptifact-ouc111117486
title: Temple administrative record, UT 1599-18

description: [Text Description:] Temple administrative record. ❧ [Text or Publication Number Note:] UT 1599-18 ❧ [Excavation Description:] Jokha ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Square thick clay tablet, uniform pink-orange color. LABEL: "1599" in black ink, "18" in red ink. Broken in two pieces and repaired. 4 x 3cm.
DOI: 10.15468/dl.nsvgzm
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Inventaire national des araignées de France métropolitaine",
 "Geometry POLYGON((-16.95376 38.72183,21.95376 38.72183,21.95376 54.27817,-16.95376 54.27817,-16.95376 38.72183))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceId is 82e3ca12-94f4-24f6-e053-2614a8c008ee",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201482-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111117339
title: Temple administrative record, UT 1599-18

description: [Text Description:] Temple administrative record. ❧ [Text or Publication Number Note:] UT 1599-18 ❧ [Excavation Description:] Jokha ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Square thick clay tablet, uniform pink-orange color. LABEL: "1599" in black ink, "18" in red ink. Broken in two pieces and repaired. 4 x 3cm.
DOI: 10.15468/dl.5jd3xu
title: Occurrence Download

description: A dataset containing 13199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is Sierra Leone"
 ]
}

 The dataset includes 13199 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201486-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111313810
title: Syriac Palimpsest (?)

description: [Text Description:] Syriac Manuscript, perhaps palimpsest? ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 18.7 x 23 cm ❧ [Physical Object Note:] Vellum with ink, red and black ❧ [Physical Object Note:] Stiching on edges. Red dots in patterns.
DOI: 10.25549/inscriptifact-ouc111356223
title: Scribal exercise: letter; or: perfectly good letter?, KTU 5.11

description: [Text Description:] Ugaritic Tablet KTU 5.11 ❧ [Text or Publication Number Note:] KTU 5.11; KTU2 5.11; KTU3 5.11; CTU 5.11; CAT 5.11; RS 17.117; DO 4583 ❧ [Excavation Description:] Found during excavations at Ras Shamra. ❧ [Medium:] Clay ❧ [Script Note:] Alphabetic Cuneiform
DOI: 10.15468/dl.e3398u
title: Occurrence Download

description: A dataset containing 19748 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heteropogon contortus (L.) P.Beauv. ex Roem. & Schult."
 ]
}

 The dataset includes 19748 records from 339 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0399378-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmx48u
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neosalangichthys ishikawae (Wakiya & Takahashi, 1913)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021481-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qrnzk
title: Occurrence Download

description: A dataset containing 16411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Misgurnus anguillicaudatus (Cantor, 1842)",
 "Year 1950-2024"
 ]
}

 The dataset includes 16411 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021482-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92mzbq
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oplegnathus fasciatus (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 460 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021483-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14281690
title: Suggesting Code Edits in Interactive Machine Learning Notebooks Using Large Language Models

description: Machine learning developers frequently use interactive computational notebooks, such as Jupyter notebooks, to host code for data processing and model training. Jupyter notebooks provide a convenient tool for writing machine learning pipelines and interactively observing outputs, however, maintaining Jupyter notebooks, e.g., to add new features or fix bugs, can be challenging due to the length and complexity of the notebooks. Moreover, there is no existing benchmark related to developer edits on Jupyter notebooks. To address this, we present the first dataset of 48,398 Jupyter notebook edits derived from 20,095 revisions of 792 machine learning repositories on GitHub, and perform the first study of the using LLMs to predict code edits in Jupyter notebooks. Our dataset captures granular details of cell-level and line-level modifications, offering a foundation for understanding real-world maintenance patterns in machine learning workflows. We observed that the edits on Jupyter notebooks are highly localized, with changes averaging only 166 lines of code in repositories. While larger models outperform smaller counterparts in code editing, all models have low accuracy on our dataset even after finetuning, demonstrating the complexity of real-world machine learning maintenance tasks. Our findings emphasize the critical role of contextual information in improving model performance and point toward promising avenues for advancing large language models’ capabilities in engineering machine learning code.
DOI: 10.15468/dl.squtut
title: Occurrence Download

description: A dataset containing 28798 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Selene vomer (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 28798 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021484-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.27924057
title: Support Data for Deciphering spatio-temporal variations in Holocene relative sea level in the South China Sea: from local reconstructions to a regional database

description: Chapter Two investigates the application of microfossils and δ13C and C/N geochemistry to develop high-resolution late Holocene RSL records from sediments in Deep Bay, located on the eastern side of the PRD. This chapter characterises the contemporary distribution of these proxies across three transects encompassing subtidal, intertidal (mudflat and mangrove), and upland environments. Partitioning Around Medoids (PAM) analysis is employed to characterise distinct biozones based on microfossil assemblages, while CCA examines the relationships between contemporary diatom and foraminiferal communities and environmental variables. Bayesian transfer functions (BTFs) are developed using modern foraminiferal and diatom assemblages, incorporating priors informed by δ13C and C/N geochemistry. These BTFs are applied to a sediment core obtained from a contemporary mangrove setting in Mai Po, Deep Bay, to evaluate their efficacy. The reconstructions are subsequently validated against local tide gauge data to assess the relative effectiveness of foraminiferal and diatom-based proxies in reconstructing RSL changes. This chapter has been submitted to Marine Geology.<br>Chapter Three establishes the indicative meaning of S. cuccullata examining its contemporary vertical distribution along rocky coasts in Hong Kong, including periodic inundated thin S. cuccullata beds in elevated tidal pools. The elevation of the ancient oyster bed is resurveyed, and its morphology and depositional context are documented. Petrographic analysis and X-ray diffraction are used to evaluate the lithology and mineralogy of the ancient oyster bed, and therefore classify the reef and reconstruct the environment where it formed. Additionally, two new radiocarbon dates are obtained from samples collected at different elevations within the ancient bed to reconstruct mid-Holocene RSL in Hong Kong, constraining the timing and magnitude of the highstand in the region. This chapter has been prepared to be submitted to Palaeogeography, Palaeoclimatology, Palaeoecology.Chapter Four develops a quality-controlled Holocene RSL database for the SCS coast, incorporating SLIPs and limiting points derived from sedimentary, geomorphic, coral, fixed biological, and archaeological indicators spanning 14 ka to the present. Uncertainties associated with tidal range changes over the Holocene are addressed using a paleotidal model. Spatio-temporal fields of RSL change are reconstructed, with RSL and rates of RSL change estimated by applying SPTEHM to the database. Sensitivity tests are performed to examine the effects of global and Antarctic ice sheet deglaciation timing and variations in 3D Earth structure, including lateral heterogeneity, on GIA model predictions. The results are used to interpret regional and local processes driving spatio-temporal variability in RSL change. This chapter has been prepared to be submitted to Quaternary Science Reviews.
DOI: 10.15468/dl.en28ax
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scaradon fasciatus Temminck & Schlegel, 1844",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021485-241126133413365/datasets/export for details.
DOI: 10.25442/hku.27918465
title: Supporting data for "The use of a high-sensitivity droplet digital PCR assay for risk prediction in chronic hepatitis B"

description: These datasets were utilized for the thesis "The use of a high-sensitivity droplet digital PCR assay for risk prediction in chronic hepatitis B". The datasets involved chronic hepatitis B patients either on antiviral therapy or with hepatitis B surface antigen seroclearance, with all patients were recruited from Queen Mary Hospital Hong Kong. These datasets encompassed clinical and laboratory data from these patients.
DOI: 10.25442/hku.27918465.v1
title: Supporting data for "The use of a high-sensitivity droplet digital PCR assay for risk prediction in chronic hepatitis B"

description: These datasets were utilized for the thesis "The use of a high-sensitivity droplet digital PCR assay for risk prediction in chronic hepatitis B". The datasets involved chronic hepatitis B patients either on antiviral therapy or with hepatitis B surface antigen seroclearance, with all patients were recruited from Queen Mary Hospital Hong Kong. These datasets encompassed clinical and laboratory data from these patients.
DOI: 10.25442/hku.27915849
title: Supporting data for Stratifying gene vulnerabilities among patient-derived gastric cancer organoids by CRISPR-Cas9 screens

description: Raw data files and analysed data for thesis titled "<b>Stratifying gene vulnerabilities among patient-derived gastric cancer organoids by CRISPR-Cas9 screens</b>".Related computational scripts for graph plotting and sequencing alignments.Gastric cancer is the fifth most common malignant tumour worldwide, with an estimated 5-year survival rate of less than 20%. Gastric cancer is classified into multiple subtypes based on the Lauren Classification. The main subtypes based on histomorphology are the intestinal and diffuse subtypes, while there is also a mixed subtype. Gastric cancer carrying ARHGAP fusion is shown to have a worse prognosis when compared to ARHGAP fusion-negative ones, and ARHGAP fusion mutation is highly associated with the diffuse subtype. There are different fusion mutations present in gastric cancer, and among the fusion mutations, CLDN18-ARHGAP26 and CTNND1-ARHGAP26 are the fusion mutations with high prevalence in the population. This research aims to identify the genetic factors contributing to gastric cancer development, with a particular focus on identifying potential therapeutic targets for ones with ARHGAP fusion mutations. Building upon our previous genome-wide CRISPR-Cas9 screening data in an ARHGAP fusion-containing organoid line, we selected top-performing genes to construct sub-pool libraries for screening in a panel of organoid lines derived from patients with different gastric cancer subtypes. Through high-throughput CRISPR screening, computational analyses (MAGeCK, BAGEL, JACKs and Trinity CTAT), and downstream validation (Growth competition assays), this work identifies common and distinct vulnerabilities among gastric cancer subtypes.
DOI: 10.25442/hku.27915849.v1
title: Supporting data for Stratifying gene vulnerabilities among patient-derived gastric cancer organoids by CRISPR-Cas9 screens

description: Raw data files and analysed data for thesis titled "<b>Stratifying gene vulnerabilities among patient-derived gastric cancer organoids by CRISPR-Cas9 screens</b>".Related computational scripts for graph plotting and sequencing alignments.Gastric cancer is the fifth most common malignant tumour worldwide, with an estimated 5-year survival rate of less than 20%. Gastric cancer is classified into multiple subtypes based on the Lauren Classification. The main subtypes based on histomorphology are the intestinal and diffuse subtypes, while there is also a mixed subtype. Gastric cancer carrying ARHGAP fusion is shown to have a worse prognosis when compared to ARHGAP fusion-negative ones, and ARHGAP fusion mutation is highly associated with the diffuse subtype. There are different fusion mutations present in gastric cancer, and among the fusion mutations, CLDN18-ARHGAP26 and CTNND1-ARHGAP26 are the fusion mutations with high prevalence in the population. This research aims to identify the genetic factors contributing to gastric cancer development, with a particular focus on identifying potential therapeutic targets for ones with ARHGAP fusion mutations. Building upon our previous genome-wide CRISPR-Cas9 screening data in an ARHGAP fusion-containing organoid line, we selected top-performing genes to construct sub-pool libraries for screening in a panel of organoid lines derived from patients with different gastric cancer subtypes. Through high-throughput CRISPR screening, computational analyses (MAGeCK, BAGEL, JACKs and Trinity CTAT), and downstream validation (Growth competition assays), this work identifies common and distinct vulnerabilities among gastric cancer subtypes.
DOI: 10.25442/hku.27859848
title: Supporting data for PhD thesis "The Material Response to Social Transformation: Experimental Architecture Production in Contemporary China"

description: The uploaded dataset is the empirical data for my PhD dissertation, including in-depth interview recordings, transcriptions, and photos. These first-hand data was collected from field surveys conducted in two locations: Louna Village in Guizhou Province and Aranya Community in Hebei Province. It comprises 34 photos, 96 audio recordings and 84 transcriptions. The interviewees mainly consist of decision-makers (government), participants (local residents), stakeholders (developers, architects, other social capital) and tourists.
DOI: 10.25442/hku.27859848.v1
title: Supporting data for PhD thesis "The Material Response to Social Transformation: Experimental Architecture Production in Contemporary China"

description: The uploaded dataset is the empirical data for my PhD dissertation, including in-depth interview recordings, transcriptions, and photos. These first-hand data was collected from field surveys conducted in two locations: Louna Village in Guizhou Province and Aranya Community in Hebei Province. It comprises 34 photos, 96 audio recordings and 84 transcriptions. The interviewees mainly consist of decision-makers (government), participants (local residents), stakeholders (developers, architects, other social capital) and tourists.