cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p698mn7/20
title: Figure_e-5_Ratio_stratification_plots_migraine_depression

description: Figure e-5: ApoA1 and S-HDL-FC ratio stratification plots for migraine and depression in NESDA and LUMINA.
DOI: 10.5061/dryad.p698mn7/21
title: Figure_e-6_Ratio_stratification_plots_migraine_body_mass_index

description: Figure e-6: ApoA1 and S-HDL-FC ratio stratification plots for migraine and body mass index in NESDA and LUMINA.
DOI: 10.5061/dryad.qh46k18.1
title: Data from: Context-dependent evolution of ostracod morphology along the ecogeographical gradient of ocean depth
DOI: 10.5061/dryad.qh46k18.2
title: Data from: Context-dependent evolution of ostracod morphology along the ecogeographical gradient of ocean depth
DOI: 10.5061/dryad.qh46k18.2/1.2
title: Juarez_et_al_data

description: This zip file contains data and metadata for: 1) species maximum values, 2) individual values for specimens from the NMNH, and 3) species maximum values sent to us by Dr. Anna Syme.
DOI: 10.5061/dryad.ss50dn7/1
title: Pollen counts

description: Pollen counts extracted from the Czech Quaternary Palynological Database (https://botany.natur.cuni.cz/palycz/) on 2 November 2017 covering the entire study area. Pollen taxonomy follows Beug (2004). Age is given in the calibrated age scale in BP (0 cal BP = 1950). Regions are defined as in Kuneš et al. (2009).
DOI: 10.5061/dryad.ss50dn7/2
title: Disturbance frequency indices

description: List of plant species and their corresponding disturbance index as in Herben et al. (2016). Frequency of plant species in present-day vegetation was extracted from Chytrý & Rafajová (2003). Each plant taxon is assigned to a pollen taxon according to Beug (2004).
DOI: 10.17632/tfvp293w5k.1
title: Data for: Comprehensive kinetic and substrate specificity analysis of an arylsulfatase from Helix pomatia using mass spectrometry

description: Supporting Information containing calibration curves, supporting tables and NMR spectra of synthesised compounds
DOI: 10.17632/trsvrsgbyj.1
title: Data for: Value Investing with Dividend-to-Market Ratio

description: This file contains monthly returns of long/short net cash flow yield (NCFY) factors.
DOI: 10.5061/dryad.0dt2h6c/1
title: Stubbs et al. 2019 Paleobiology Dryad Supplement

description: Supplementary data, R scripts, and figures S2-9
DOI: 10.5061/dryad.0ks22bg/1
title: Table S1: aerodynamic variables with references

description: Aerodynamic measurements for 474 extant bat species, 7 Eocene bats, and 28 mammalian gliders, indicating their sources. (*) calculated in our study from the other variables.
DOI: 10.5061/dryad.2508t4h/1
title: C_EBP_genotypes_364_individuals

description: Table containing the C/EBP-1 genotypes for 364 individuals from 15 populations used in this study.
DOI: 10.5061/dryad.2508t4h/2
title: R_arvalis_gradient_1000SNPs_136_individuals_genepop_format.txt

description: Genepop formatted file containing genotypes from the 1000 putatively neutral SNPs for 136 individuals. SNP names are ddRAD fragment_SNP position. Data are organized in the five regions, each comprising individuals from 3 populations, as given in Table S1 of the publication. Populations have been renamed for the publications (A=L1 in the publication, L=L2, M=L3, R=S1, S=S2, T=S3, C=U1, O=U2, V=U3, H=V1, N=V2, U=V3, B=N1, E=N2, G=N3), individuals are named by population_family-tadpole, i.e. M3-2 is the second tadpole of family 3 of population M.
DOI: 10.5061/dryad.2508t4h/3
title: Phenotypic_data_common_garden_126_families

description: Table containing the phenotypic data from the common garden experiment for the 126 families used in this study. Mass at metamorphosis is given in g, larval period in days.
DOI: 10.5061/dryad.3f31m01/1
title: data of Free vibration analysis of transmission lines based on the dynamic stiffness method

description: The data file is calculated by the formula in the manuscript and ABAQUS.
DOI: 10.5061/dryad.3kt7fc2/1
title: Data  for MP and asthma

description: Data of "Epidemiological relationship between Mycoplasma pneumoniae Pneumonia and recurrent wheezing episode in children"
DOI: 10.5061/dryad.3tq2v6m/1
title: Database

description: Dataset used in the manuscript
DOI: 10.5061/dryad.4s5bf8d/1
title: Mathematica code.

description: The mathematica code used to build the model described in that article.
DOI: 10.5061/dryad.55ks141/1
title: Global Distributions of Quercus species

description: Global distribution of Quercus updated based on Xu et al. (2016). (Xu, X., Wang, Z., Rahbek, C., Sanders, N.J. & Fang, J. (2016) Geographical variation in the importance of water and energy for oak diversity. Journal of Biogeography, 43, 279-288.  https://doi.org/10.1111/jbi.12620)
DOI: 10.5061/dryad.55ks141/2
title: Species climatic niche

description: Species affinities for six groups of Quercus and their climatic niche
DOI: 10.5061/dryad.55ks141/3
title: Phylogenetic tree of Quercus

description: Phylogenetic tree of Quercus in newick format.
DOI: 10.5061/dryad.734q42p/1
title: Growth_curves

description: Growth curves associated to Figure S4. Data correspond to optical density (OD) measurements from plate reader experiments. Abbreviations: "BA600" is Benzyl Alcohol 600µM; "Ben1000" is Benzoate 1000µM; "Ci1000" is Citrate 1000µM.
DOI: 10.5061/dryad.8d2t65n/1
title: Egg size of parents mutants

description: Egg size of mutants (N2, ppw-1, rrf-1) subjected to either daf-2 RNAi or empty vector.
DOI: 10.5061/dryad.8d2t65n/2
title: lifespan of mated parents N2

description: Lifespan of mated parents (N2) subjected to daf-2 RNAi or empty vector. If they died of matricide it is coded as 1 in matricide column.
DOI: 10.5061/dryad.8d2t65n/3
title: lifespan unmated parents N2

description: Lifespan of unmated parents (N2) subjected to daf-2 RNAi or empty vector. If they died of matricide it is coded as 1 in matricide column.
DOI: 10.5061/dryad.8pp0nv1/1
title: VIDELIER_et_al_2019_AM_NAT_DRYAD_DATA
DOI: 10.5061/dryad.98sp59j/1
title: Puncher_2019_NorthernSpawningCod_240IND_5077SNP

description: Genepop file containing genotypes (5,077 SNPs) of 240 adult Atlantic Cod (Gadus morhua) captured in the Northeastern Atlantic Ocean (2J3KL4VX). DNA was prepared using a ddRAD protocol and 125PE sequenced 60-96 individuals/lane on an Illumina HiSeq2500. SNPs were selected using STACKS and various software described in "Chromosomal inversions in the Atlantic cod genome: implications for management of Canada’s Northern cod stock." Please refer to publication for individual codes.
DOI: 10.5061/dryad.98sp59j/3
title: SNP_flanking_sequences and alleles_from_GadMor_May2010_alignment

description: SNP flanking sequences and alleles from GadMor_May2010_alignment (Star B, et al. Nature 2011 Aug 10).
DOI: 10.5061/dryad.c63b1v1/1
title: Data sets

description: Data sets of the three main questions
DOI: 10.5061/dryad.c71qf48/2
title: Slice images of Herefordshire ophiocistioid

description: Images obtained from serial grinding fossil specimen, cut into seven pieces, at 30 µm intervals. Images in BMP format, compressed in a ZIP archive.
DOI: 10.5061/dryad.c71qf48/3
title: 3-D model of Herefordshire ophiocistioid

description: Model created using the SPIERS software suite. Model in VAXML format, compressed in a ZIP archive. To view: unpack the .zip file, install the SPIERS software suite (program and documentation available from www.spiers-software.org), and double-click the unpacked .vaxml file.
DOI: 10.5061/dryad.c86d5m0/2
title: Raw data

description: Raw data for the paper of "Enhanced low-temperature NH3-SCR performance of Ce/TiO2 modified by Ho catalyst"
DOI: 10.5061/dryad.fb88292/1
title: S1_List_of_taxa

description: List of taxa and Genbank accession codes.
DOI: 10.5061/dryad.fb88292/10
title: S_2a_Core_analysis_dataset

description: S2. Molecular matrix for the core analysis (S2a).
DOI: 10.5061/dryad.h6980d8/1
title: Species demonstrating male-mediated prenatal loss

description: This table lists all species in which male-mediated prenatal loss has been documented and includes appropriate references.
DOI: 10.5061/dryad.jc6h257/1
title: OL_dataset

description: Data-set for "Factors associated with possession of accurate knowledge regarding occupational health management among operations leaders of radiation decontamination workers in Fukushima, Japan: a cross-sectional study", accepted in BMJ Open.
DOI: 10.5061/dryad.k5r2bb0/1
title: Appendix 1_Muensterelloidea_character description3

description: Detailed character description
DOI: 10.5061/dryad.k5r2bb0/2
title: Appendix 2_Data matrix

description: Data matrix including cntinuous and discrete characters
DOI: 10.5061/dryad.k5r2bb0/3
title: Appendix 3_autapomorphies

description: Autapomorphies and character changes of all nodes
DOI: 10.5061/dryad.kd1qt0p/22
title: Figure 5 - figure supplement 1 - source data 2

description: This zip archive contains the original z-stacks used for Figure 5 - figure supplement 1, panels B and D. These are provided as TIF files. All imaging parameters are included in the image metadata. They are labeled as follows: 
A7PS302_s9_t1 = WT LSI, Dilution factor = 1
A7PS302_s10_t1 = WT LSI, Dilution factor = 1/2
A7PS302_s11_t1 = WT LSI, Dilution factor = 1/4
A7PS302_s12_t1 = WT LSI, Dilution factor = 1/8
A7PS302_s25_t1 = MUC2KO LSI, Dilution factor = 1
A7PS302_s26_t1 = MUC2KO LSI, Dilution factor = 1/2
A7PS302_s27_t1 = MUC2KO LSI, Dilution factor = 1/4
A7PS302_s28_t1 = MUC2KO LSI, Dilution factor = 1/8
A7PS284_s13_t1 = HBSS

Additionally, this file contains .csv files of all the statistics on particle sizes collected by the ImageJ macro. These are labeled in the format “zstackname_automated_counting_statistics”, where “zstackname” is the title of the associated z-stack. It also contains a .csv file of the particle # IDs of the singlet particles that were used to get the average singlet size, which was then used to normalize the ECDFs (as explained in detail in Materials and Methods). These are labeled in the format “zstackname_singlet_IDs”, where “zstackname” is the title of the associated z-stack. These .csv files were used in combination with the Jupyter notebooks (provided with this submission) to generate Figure 5 - figure supplement 1, panels B and D.
DOI: 10.5061/dryad.kd1qt0p/23
title: Figure 6 - figure supplement 3 - source data 1

description: This zip archive contains the original z-stacks used for Figure 6 - figure supplement 3, panels A and C. These are provided as TIF files. All imaging parameters are included in the image metadata. They are labeled as follows: 
A7PS308_s1_t1 = WT USI, Dilution factor = 1
A7PS308_s2_t1 = WT USI, Dilution factor = 1/2
A7PS308_s3_t1 = WT USI, Dilution factor = 1/4
A7PS308_s4_t1 = WT USI, Dilution factor = 1/8
A7PS308_s17_t1 = Rag1KO USI, Dilution factor = 1
A7PS308_s18_t1 = Rag1KO USI, Dilution factor = 1/2
A7PS308_s19_t1 = Rag1KO USI, Dilution factor = 1/4
A7PS308_s20_t1 = Rag1KO USI, Dilution factor = 1/8
A7PS284_s13_t1 = HBSS

Additionally, this file contains .csv files of all the statistics on particle sizes collected by the ImageJ macro. These are labeled in the format “zstackname_automated_counting_statistics”, where “zstackname” is the title of the associated z-stack. It also contains a .csv file of the particle # IDs of the singlet particles that were used to get the average singlet size, which was then used to normalize the ECDFs (as explained in detail in Materials and Methods). These are labeled in the format “zstackname_singlet_IDs”, where “zstackname” is the title of the associated z-stack. These .csv files were used in combination with the Jupyter notebooks (provided with this submission) to generate Figure 6 - figure supplement 3, panels A and C.
DOI: 10.5061/dryad.kd1qt0p/24
title: Figure 6 - figure supplement 3 - source data 2

description: This zip archive contains the original z-stacks used for Figure 6 - figure supplement 3, panels B and D. These are provided as TIF files. All imaging parameters are included in the image metadata. They are labeled as follows: 
A7PS308_s9_t1 = WT LSI, Dilution factor = 1
A7PS308_s10_t1 = WT LSI, Dilution factor = 1/2
A7PS308_s11_t1 = WT LSI, Dilution factor = 1/4
A7PS308_s12_t1 = WT LSI, Dilution factor = 1/8
A7PS308_s25_t1 = Rag1KO LSI, Dilution factor = 1
A7PS308_s26_t1 = Rag1KO LSI, Dilution factor = 1/2
A7PS308_s27_t1 = Rag1KO LSI, Dilution factor = 1/4
A7PS308_s28_t1 = Rag1KO LSI, Dilution factor = 1/8
A7PS284_s13_t1 = HBSS

Additionally, this file contains .csv files of all the statistics on particle sizes collected by the ImageJ macro. These are labeled in the format “zstackname_automated_counting_statistics”, where “zstackname” is the title of the associated z-stack. It also contains a .csv file of the particle # IDs of the singlet particles that were used to get the average singlet size, which was then used to normalize the ECDFs (as explained in detail in Materials and Methods). These are labeled in the format “zstackname_singlet_IDs”, where “zstackname” is the title of the associated z-stack. These .csv files were used in combination with the Jupyter notebooks (provided with this submission) to generate Figure 6 - figure supplement 3, panels B and D.
DOI: 10.5061/dryad.kd1qt0p/25
title: Table 2 - source data 1

description: This zip archive contains the chromatography data that was used to calculate the values displayed in Table 2. “WT_USI_raw_data.xlsx” contains the data for the wild-type upper small intestine, “KO_USI_raw_data.xlsx” contains the data for the MUC2 knockout upper small intestine. In both the excel files, RI = refractive index, RALS = Right-angle light scattering, LALS = low-angle light scattering, DP = differential pressure (the viscometer). All values are measured in millivolts except for retention volume, which is measured in milliliters (mL). 
The file “Table S1 – source data 1.OmnisecArchive” contains all this data, along with the data for the pullulan and dextran standard that were used to calibrate the instrument. This can be used in conjunction with Malvern OMNISEC v10.20 software to reproduce the calculations displayed in the table.
DOI: 10.5061/dryad.kd1qt0p/26
title: Table 3 - source data 1

description: This zip archive contains the chromatography data that was used to calculate the values displayed in Table 3. “WT_LSI_raw_data.xlsx” contains the data for the wild-type lower small intestine, “KO_LSI_raw_data.xlsx” contains the data for the MUC2 knockout lower small intestine. In both the excel files, RI = refractive index, RALS = Right-angle light scattering, LALS = low-angle light scattering, DP = differential pressure (the viscometer). All values are measured in millivolts except for retention volume, which is measured in milliliters (mL). 
The file “Table S2 – source data 1.OmnisecArchive” contains all this data, along with the data for the pullulan and dextran standard that were used to calibrate the instrument. This can be used in conjunction with Malvern OMNISEC v10.20 software to reproduce the calculations displayed in the table.
DOI: 10.5061/dryad.kd1qt0p/27
title: Table 4 - source data 1

description: This zip archive contains the chromatography data that was used to calculate the values displayed in Table 4. “WT_USI_raw_data.xlsx” contains the data for the wild-type upper small intestine, “Rag1KO_USI_raw_data.xlsx” contains the data for the immunoglobulin-deficient (Rag1KO) upper small intestine. In both the excel files, RI = refractive index, RALS = Right-angle light scattering, LALS = low-angle light scattering, DP = differential pressure (the viscometer). All values are measured in millivolts except for retention volume, which is measured in milliliters (mL). 
The file “Table S3 – source data 1.OmnisecArchive” contains all this data, along with the data for the pullulan and dextran standard that were used to calibrate the instrument. This can be used in conjunction with Malvern OMNISEC v10.20 software to reproduce the calculations displayed in the table. LALS data was not used for these calculations because of the noisiness of the signal from the detector.
DOI: 10.5061/dryad.kd1qt0p/29
title: Table 6 - source data 1

description: This zip archive contains the chromatography data that was used to calculate the values displayed in Table 6. “pectin_raw_data.xlsx” contains the data for pectin, “fibersol-2_raw_data.xlsx” contains the data for Fibersol-2. In both the excel files, RI = refractive index, RALS = Right-angle light scattering, LALS = low-angle light scattering, DP = differential pressure (the viscometer). All values are measured in millivolts except for retention volume, which is measured in milliliters (mL). 
The file “Table S5 – pectin source data” contains all the data for pectin, along with the data for the pullulan and dextran standard that were used to calibrate the instrument for this run. The file “Table S5 – fibersol-2 source data” contains all the data for Fibersol-2, along with the data for the pullulan and dextran standard that were used to calibrate the instrument for this run. This can be used in conjunction with Malvern OMNISEC v10.20 software to reproduce the calculations displayed in the table. LALS data was not used for these calculations because of the noisiness of the signal from the detector.
DOI: 10.5061/dryad.kd1qt0p/30
title: Table 7 - source data 1

description: This zip archive contains the chromatography data that was used to calculate the values displayed in Table 7. “pectin_USI_raw_data.xlsx” contains the data for the upper small intestine of pectin-fed mice, “Fibersol-2_USI_raw_data.xlsx” contains the data for the upper small intestine of Fibersol-2-fed mice. In both the excel files, RI = refractive index, RALS = Right-angle light scattering, LALS = low-angle light scattering, DP = differential pressure (the viscometer). All values are measured in millivolts except for retention volume, which is measured in milliliters (mL). 
The file “Table S6 – source data 1” contains all the data, along with the data for the pullulan and dextran standard that were used to calibrate the instrument. This can be used in conjunction with Malvern OMNISEC v10.20 software to reproduce the calculations displayed in the table. LALS data was not used for these calculations because of the noisiness of the signal from the detector.
DOI: 10.5061/dryad.mt6552d/1
title: CarrierReitzel_FSW_RawData_Dryad

description: Raw read files (In FASTQ) for environmental samples relating to this study. Samples labels are: FSW_DevelopmentalTimepoint_BiologicalReplicate. Within each folder are forward (*_R1_*)and reverse (*_R2_*) files.
DOI: 10.5061/dryad.mt6552d/2
title: CarrierReitzel_Sp_RawData_Dryad

description: Raw read files (in FASTQ) for Strongylocentrotus purpuratus (Sp) samples relating to this study. Samples labels are: Sp_DevelopmentalTimepoint_BiologicalReplicate. Within each folder are forward (*_R1_*)and reverse (*_R2_*) files.
DOI: 10.5061/dryad.mt6552d/3
title: CarrierReitzel_Mf_RawData_Dryad

description: Raw read files (in FASTQ) for Mesocentrotus franciscanus (Mf) samples relating to this study. Samples labels are: Mf_DevelopmentalTimepoint_BiologicalReplicate. Within each folder are forward (*_R1_*)and reverse (*_R2_*) files.
DOI: 10.5061/dryad.mt6552d/4
title: CarrierReitzel_Sd_RawData_Dryad

description: Raw read files (in FASTQ) for Strongylocentrotus droebachiensis (Sd) samples relating to this study. Samples labels are: Sd_DevelopmentalTimepoint_BiologicalReplicate. Within each folder are forward (*_R1_*)and reverse (*_R2_*) files.
DOI: 10.5061/dryad.nk7j148/1
title: Biasoli_et_al data

description: The compressed Biasoli_et_al data folder was created using 7-Zip 9.20. The folder contains: 

(1) canineHD array (Illumina) genotype data: Plink Map and Ped files for the 6 Study Sets listed in Supplementary Table
S1. The individuals listed in the Ped files had a SNP call rate of &gt;90%.
(2) BAM files (and associated BAM index files) created (using BWA) by alignment of Fastq format paired-end sequence
reads of a 2.9Mb region of CFA31 (CFA31:34433688-37366557), captured from 6 Labrador Retrievers affected by a
mast cell tumour and 6 unaffected Labrador Retrievers, to the CanFam3.1 reference Boxer genome.
(3) A text file listing the case/control status of the Labrador Retrievers whose 2.9MB CFA31 region sequences are
represented in the BAM sequence alignment files.
DOI: 10.5061/dryad.p698mn7/22
title: Figure_e-7_Metabolite_correlation_between_measurements_and_over_time

description: Figure e-7: Metabolite correlations between measurements and over time for apoA1 and the S-HDL-FC ratio.
DOI: 10.5061/dryad.p698mn7/23
title: Figure_e-8_HDL_feature_plots_for_all_individual_cohorts

description: Figure e-8: HDL feature plots for all individual cohorts.
DOI: 10.5061/dryad.p698mn7/24
title: Table_e-1_Included_metabolites_in_pathways

description: Table e-1: Included metabolites in (sub-)pathways
DOI: 10.5061/dryad.p698mn7/25
title: Table_e-2_Included_metabolite_ratios

description: Table e-2: Included metabolite ratio’s
DOI: 10.5061/dryad.p698mn7/26
title: Table_e-3_Results_from_logistic_regression_sex_age_migraine

description: Table e-3: Results from logistic regression with metabolite concentrations, sex, and age as independent variables and migraine status as dependent variable.
DOI: 10.5061/dryad.p698mn7/27
title: Table_e-4_Meta_analysis_results_of_the_logistic_regression

description: Table e-4: Meta-analysis results of the logistic regressions with sex, age, and metabolite concentrations as independent variables and migraine status as dependent variable.
DOI: 10.5061/dryad.p698mn7/28
title: Table_e-5_Results_logistic_regression_LLM_BMI_sex_age_migraine

description: Table e-5: Results logistic regression with metabolite concentrations, lipid lowering medication usage, body mass index, sex, and age as independent variables and migraine status as dependent variable.
DOI: 10.5061/dryad.p8br3r4/1
title: Amplicon sequences of microbial communities on the surface of ecklonia radiata under different environmental conditions

description: This data includes bacterial 16S rRNA gene sequences of microbial communities on the surface of Ecklonia radiata under different environmental scenarios. Amplicon sequencing used 27F/519R primers contain V1-V3 regions.
DOI: 10.5061/dryad.qh46k18.1/1.1
title: Juarez_et_al_data

description: This zip file contains data and metadata for: 1) species maximum values, and 2) individual values for specimens from NMNH.
DOI: 10.5061/dryad.r07m836/1
title: Foundress counts

description: Each tab represents foundress counts for a given fig wasp species - borders designate different trees
DOI: 10.5061/dryad.r07m836/2
title: Chung et al. Oikos 2019 Table 3 Single Foundress Offspring Counts Raw Data

description: Offspring counts for figs with single foundresses for different species
DOI: 10.5061/dryad.sg4m5h0/1
title: experiment 1 - analysis
DOI: 10.5061/dryad.sg4m5h0/2
title: experiment 1 - data
DOI: 10.5061/dryad.sg4m5h0/3
title: experiment 2 - analysis
DOI: 10.5061/dryad.th757vg/1
title: Mitochondrial gene sequence alignments

description: Zip file with NEXUS files containing alignments
DOI: 10.5061/dryad.v5n28fn/2
title: R2_Supplements

description: Supplementary material; appendix e-1; table e-1~4
DOI: 10.5061/dryad.vh380vb/1
title: Dryad_data_3862

description: Study population comprised of 3862 encounters reported in Tables 1 and 2.
DOI: 10.17632/5vkgfny3fp.1
title: Data for: The up-regulation of two identified wound healing specific proteins-HSP70 and lysozyme in regenerated Esenia fetida through transcriptome analysis

description: The supplementary materials file includes LC-MS/MS result, transcriptome analysis result and differentially expressed gene predicted PPI result.
DOI: 10.17632/dmd5dc8ymr.1
title: Appendix A and B for: From ecological opportunism to multi-cropping: mapping food globalisation in prehistory

description: Appendix A. Supplementary Table S1 Appendix B. Supplementary References
DOI: 10.17632/gfy9crz25h.1
title: Data for: Pegmatite dyke emplacement and the state of stress during cratonization – an example from the Dharwar Craton (South India)

description: Field orientation of pegmatite dykes measured in Koppal Pluton (KP-dykes.txt) and Peninsular Gneiss (PG-dykes.txt)