cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wkr9n4
title: Occurrence Download

description: A dataset containing 1138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matsumurasca Anufriev, 1973"
 ]
}

 The dataset includes 1138 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014194-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21947/2439503
title: WHOI Ceilometer / Processed Data

description: This dataset consists of netCDF files containing L1 data from the WHOI ceilometer at Woods Hole.
DOI: 10.15468/dl.t454tw
title: Occurrence Download

description: A dataset containing 2217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Xylopia aethiopica (Dunal) A.Rich."
 ]
}

 The dataset includes 2217 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014195-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bh9uxt
title: Occurrence Download

description: A dataset containing 5251 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachygrontha Germar, 1837"
 ]
}

 The dataset includes 5251 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014197-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zrc22
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urodacus elongatus L.E.Koch, 1977"
 ]
}

 The dataset includes 276 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014198-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17038/cse/2440250
title: Active Thermochemical Tables (ATcT) Thermochemical Values ver. 1.140
DOI: 10.15468/dl.gtmyx6
title: Occurrence Download

description: A dataset containing 6263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aphloia theiformis (Vahl) Benn."
 ]
}

 The dataset includes 6263 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014200-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17038/cse/2440252
title: Active Thermochemical Tables (ATcT) Thermochemical Values ver. 1.148
DOI: 10.17038/cse/2440254
title: Active Thermochemical Tables (ATcT) Thermochemical Values ver. 1.172
DOI: 10.15468/dl.tgvsn5
title: Occurrence Download

description: A dataset listing the 38 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is New Zealand Freshwater Fish Database",
 "GadmGid is NZL.6_1",
 "Geometry POLYGON((176.48636 -39.13735,176.0351 -39.98277,176.6273 -40.43656,177.04779 -39.90744,178.11219 -39.15022,177.43011 -38.78559,177.07835 -38.71266,176.48636 -39.13735))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 38 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014191-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9yd6p
title: Occurrence Download

description: A dataset containing 2649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Centella asiatica (L.) Urb."
 ]
}

 The dataset includes 2649 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014201-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/12e945b2889d436840bc09946881b009
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 1 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Air temperature, relative humidity, wind speed and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.15468/dl.vgxsgf
title: Occurrence Download

description: A dataset containing 2541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carissa spinarum L."
 ]
}

 The dataset includes 2541 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014202-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7ndnn
title: Occurrence Download

description: A dataset containing 3153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is New Zealand Freshwater Fish Database",
 "GadmGid is NZL.6_1",
 "Geometry POLYGON((176.48636 -39.13735,176.0351 -39.98277,176.6273 -40.43656,177.04779 -39.90744,178.11219 -39.15022,177.43011 -38.78559,177.07835 -38.71266,176.48636 -39.13735))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3153 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014203-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcfm5j
title: Occurrence Download

description: A dataset containing 411554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.43_1",
 "Year 2020-2023"
 ]
}

 The dataset includes 411554 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014199-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4me4rd
title: Occurrence Download

description: A dataset containing 3915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Catharanthus roseus (L.) G.Don"
 ]
}

 The dataset includes 3915 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014204-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v263ek
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cryptolepis sanguinolenta (Lindl.) Schltr."
 ]
}

 The dataset includes 146 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014205-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/d33badc456a595c8f2a0f3e75bd8eb2b
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 1 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.15468/dl.yu85zb
title: Occurrence Download

description: A dataset containing 2628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acropora millepora (Ehrenberg, 1834)"
 ]
}

 The dataset includes 2628 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014206-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjzd5p
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hoodia gordonii Sweet, 1830"
 ]
}

 The dataset includes 302 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014207-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/b07327e28c0b81339403cb7ef56c0ea8
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 1 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, and wind direction summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Air temperature, relative humidity, wind speed and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.15468/dl.62gecv
title: Occurrence Download

description: A dataset containing 3153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is New Zealand Freshwater Fish Database",
 "GadmGid is NZL.6_1",
 "Geometry POLYGON((176.48636 -39.13735,176.0351 -39.98277,176.6273 -40.43656,177.04779 -39.90744,178.11219 -39.15022,177.43011 -38.78559,177.07835 -38.71266,176.48636 -39.13735))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3153 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014208-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyk6dd
title: Occurrence Download

description: A dataset containing 516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mondia whitei (Hook.fil.) Skeels"
 ]
}

 The dataset includes 516 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014209-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sueghm
title: Occurrence Download

description: A dataset containing 1609 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strobilanthes cusia (Nees) Kuntze"
 ]
}

 The dataset includes 1609 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014210-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pqa6f
title: Occurrence Download

description: A dataset containing 3301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rauvolfia vomitoria Afzel."
 ]
}

 The dataset includes 3301 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014211-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4twea
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Strophanthus gratus (Wall. & Hook.) Baill."
 ]
}

 The dataset includes 304 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014212-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13120682
title: Jet stream controls on driven European climate extremes and agricultural agriculture

description: The code is used to analyze data and produce the main figures for the manuscript (Xu et al., Jet stream controls on  European climate and agriculture since 1300 CE. Nature, 2024, https://doi.org/10.1038/s41586-024-07985-x). We used three temperature-sensitive tree-ring maximum chronologies from Europe to reconstruct the North-Atlantic-Europe Jet Stream Latitude (EU JSL). The EU JSL can capture the variability of dipolar patterns in temperature and precipitation extremes between Southern Europe and Northern Europe in summer (July-August). We extended the EU JSL to 1300 CE based on a multiple linear regression transfer function, which can explain the total variance of about 38.5% over the instrumental period (1945-2005, from NCEP reanalysis dataset V1.0). We then explore the relationships between EU JSL and temperature and precipitation over a long-term scale. We also explored the relationships between EU JSL extremes, crop failure events, and some social events over the past seven centuries. We found that the climate and societal extremes have been influenced by a summertime climatic dipole between northwestern and southeastern Europe, driven by EU JSL. Using the reconstruction, we explore relationships between EU JSL and climate and societal extremes using independent historical documentary datasets. We highlight the imprint of the EU JSL climate dipole on not only historical climate extremes, but also on the dipole's biophysical (e.g., grape harvest, wildfire), economic (e.g., wine quality and grain price), and even demographic (e.g., mortality and epidemics) impacts.

The code is for the data analysis and visualization. We used R 4.2 version in the Windows 11 platform. Before re-running the code, please read the following instructions:

1. Download all the input data and the R folder (all of the code). Please put the input data into a folder named input. We uploaded the temp and precip reconstruction data for the European domain.2. Create a similar structure for the folders.3. Before running the code, please unzip the crop data in the folder "./input/crop/*.zip", two large crop NetCDF fromat dataset.4. Before running the main code "test all.R", please set you-work-path and run "setwd ("YOURPATH")" command line. 5. Some results or data in the output folder can be produced when run the code, you can also directly input them from the input folder in the next step to save time.6. For the visualization, some of the arrangements are finished in Adobe Illustrator or Adobe Photoshop.7. This is the main code for the manuscript, we would be improved or modified during the peer review.8. If you have any questions or warnings during the re-run, please get in touch with me (guobaoxu@nwu.edu.cn; xgb234@lzb.ac.cn).

If you have any suggestions or comments, please also let me know.

Best wishes,Guobao
DOI: 10.15468/dl.9wm8nc
title: Occurrence Download

description: A dataset containing 1504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Voacanga africana Stapf"
 ]
}

 The dataset includes 1504 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014213-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27011980
title: Image quality improvement of liver ultrasound using unsupervised deep learning

description: From January to April 2022, we prepared two categories of datasets for training our deep learning-based image quality improvement algorithm, i.e., 1) liver US obtained by a US machine &gt;10 years old, consequently having quality deterioration, served as an input, and 2) liver US obtained by a high-end US machine manufactured within last five years, served as a target (Fig. 1). Basically, all liver ultrasound scans included a minimum of 10 images (ranging from 10 to 38). These images encompassed suitable liver and gallbladder visuals, with no cine clips present. Additionally, all images were acquired using a 1-6 MHz convex transducer. For an input dataset, we randomly selected 500 liver US (training sets: validation sets: test sets = 350: 50:100) from 746 consecutively enrolled examinations from January 2016 to February 2018, performed by a hepatologist with 20 years of experience, using a 12-year-old US system (SSD-alpha 10 Ultrasound System, Aloka Co., Ltd., Japan). For a target dataset, we randomly selected 400 out of 2,652 liver US performed by one of three board-certified abdominal radiologists with more than 15 years of experience (E.S.L., H.J.P., and B.I.C.) from December 2020 to December 2021. All US of target datasets were obtained by a high-end US machine (Aplio i900, Canon Medical Systems, Japan), manufactured within the last 5 years from the date of examination.
DOI: 10.6084/m9.figshare.27011980.v1
title: Image quality improvement of liver ultrasound using unsupervised deep learning

description: From January to April 2022, we prepared two categories of datasets for training our deep learning-based image quality improvement algorithm, i.e., 1) liver US obtained by a US machine &gt;10 years old, consequently having quality deterioration, served as an input, and 2) liver US obtained by a high-end US machine manufactured within last five years, served as a target (Fig. 1). Basically, all liver ultrasound scans included a minimum of 10 images (ranging from 10 to 38). These images encompassed suitable liver and gallbladder visuals, with no cine clips present. Additionally, all images were acquired using a 1-6 MHz convex transducer. For an input dataset, we randomly selected 500 liver US (training sets: validation sets: test sets = 350: 50:100) from 746 consecutively enrolled examinations from January 2016 to February 2018, performed by a hepatologist with 20 years of experience, using a 12-year-old US system (SSD-alpha 10 Ultrasound System, Aloka Co., Ltd., Japan). For a target dataset, we randomly selected 400 out of 2,652 liver US performed by one of three board-certified abdominal radiologists with more than 15 years of experience (E.S.L., H.J.P., and B.I.C.) from December 2020 to December 2021. All US of target datasets were obtained by a high-end US machine (Aplio i900, Canon Medical Systems, Japan), manufactured within the last 5 years from the date of examination.
DOI: 10.15468/dl.kndakg
title: Occurrence Download

description: A dataset containing 18622 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scoparia dulcis L."
 ]
}

 The dataset includes 18622 records from 525 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014214-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/be49f3583943d22130268d0d3b70e785
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 1 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-1. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-1 site. This is an ONGOING dataset.
DOI: 10.15468/dl.42xzn3
title: Occurrence Download

description: A dataset containing 608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Xysmalobium undulatum (L.) Aiton"
 ]
}

 The dataset includes 608 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014215-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfk4zk
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Linaria clementei Haens.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 49 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008798-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.