DOI: 10.5281/zenodo.13320583
title: Habitat data for microbial organisms

description: Data on habitats of microbial organisms derived from the following sources:

Adam, R.D., 2017. Diplomonadida, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–28. https://doi.org/10.1007/978-3-319-32669-6_1-1

Agatha S (2011) Global Diversity of Aloricate Oligotrichea (Protista, Ciliophora, Spirotricha) in Marine and Brackish Sea Water. PLoS ONE 6(8): e22466. https://doi.org/10.1371/journal.pone.0022466

Alker AP, Smith GW, Kim K. 2001. Characterization of Aspergillus sydowii (Thom et Church), a fungal pathogen of Caribbean sea fan corals. Hydrobiologia 460:105–11.

Baldauf S.L., Strassmann J.E. (2017) Dictyostelia. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_14-1

Baumgartner, M., Eberhardt, S., De Jonckheere, J. F., & Stetter, K. O. (2009). Tetramitus thermacidophilus n. sp., an amoeboflagellate from acidic hot springs. Journal of Eukaryotic Microbiology 56:201–206. https://doi.org/10.1111/j.1550-7408.2009.00390.x

Beakes G.W., Thines M. (2016) Hyphochytriomycota and Oomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_26-1

Bennett R.M., Honda D., Beakes G.W., Thines M. (2017) Labyrinthulomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_25-1

Bernard, Catherine, Alastair G. B. Simpson & David J. Patterson (2000) Some free-living flagellates (protista) from anoxic habitats Ophelia 52(2):113-142. https://doi.org/10.1080/00785236.1999.10409422

Bigelow, D. M., Olsen, M. W., & Gilbertson, R. L. (2005). Labyrinthula terrestris sp. nov., a new pathogen of turf grass. Mycologia 97:185–190. https://doi.org/10.1080/15572536.2006.11832852

Bishop, A. (1935). Observations upon a “Trichomonas” from pond water. Parasitology 27:246–256. https://doi.org/10.1017/S0031182000015110

Boltovskoy D., Anderson O.R., Correa N.M. (2017) Radiolaria and Phaeodaria. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_19-2

Borodina, A.S., Mylnikov, A.P., Janouškovec, J., Keeling, P.J. and Tikhonenkov, D.V., 2021. The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba stagnalis n. sp.(Vahlkampfiidae; Heterolobosea). Diversity, 13(9), p.433. https://doi.org/10.3390/d13090433

Bourland, W. A. & Struder-Kypke, M. C. 2010. Agolohymena aspidocauda nov. gen., nov. spec., a histophagous freshwater tetrahymenid ciliate in the family Deltopylidae (Ciliophora, Hymenostomatia), from Idaho (northwest USA): morphology, ontogenesis and molecular phylogeny. Eur. J. Protistol. 46:221–242. https://doi.org/10.1016/j.ejop.2010.04.003

Bradley, S.G. and Marciano-Cabral, F., 1996. Diversity of free-living ‘naked’amoeboid organisms. Journal of industrial microbiology and biotechnology, 17(3-4):314-321. https://doi.org/10.1007/BF01574706

Buaya, A. T., Ploch, S., Inaba, S., & Thines, M. (2019). Holocarpic oomycete parasitoids of red algae are not Olpidiopsis. Fungal systematics and evolution 4:21–31. https://doi.org/10.3114/fuse.2019.04.03

Bulman S., Neuhauser S. (2016) Phytomyxea. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_24-1

Cavalier-Smith, T., Chao, E.E.-Y., 2006. Phylogeny and megasystematics of phagotrophic heterokonts (kingdom Chromista). J. Mol. Evol. 62, 388–420. https://doi.org/10.1007/s00239-004-0353-8

Cavalier-Smith, Thomas & Ema E. Chao. (2012) Oxnerella micra sp. n. (Oxnerellidae fam. n.), a Tiny Naked Centrohelid, and the Diversity and Evolution of Heliozoa. Protist 163(4):574-601. https://doi.org/10.1016/j.protis.2011.12.005

Cepicka, I., Hampl, V., Kulda, J., 2010. Critical Taxonomic Revision of Parabasalids with Description of one New Genus and three New Species. Protist 161:400–433. https://doi.org/10.1016/j.protis.2009.11.005

Cho, Anna, Denis V. Tikhonenkov, Elisabeth Hehenberger, Anna Karnkowska, Alexander P. Mylnikov, and Patrick J. Keeling. 2022. Monophyly of Diverse Bigyromonadea and their Impact on Phylogenomic Relationships Within Stramenopiles. Molecular Phylogenetics and Evolution 171: 107468. https://doi.org/10.1016/j.ympev.2022.107468

Clarke, A., 2014. The thermal limits to life on Earth. International Journal of Astrobiology 13, 141–154. https://doi.org/10.1017/S147355041300043

Cook, M.E., Graham, L.E., 2016. Chlorokybophyceae, Klebsormidiophyceae, Coleochaetophyceae, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–20. https://doi.org/10.1007/978-3-319-32669-6_36-1

D’Amico, S., Collins, T., Marx, J.-C., Feller, G., Gerday, C., 2006. Psychrophilic microorganisms: challenges for life. EMBO Rep 7, 385–389. https://doi.org/10.1038/sj.embor.7400662

Darienko T, Rad-Menéndez C, Campbell CN, Pröschold T. 2021. Molecular Phylogeny of Unicellular Marine Coccoid Green Algae Revealed New Insights into the Systematics of the Ulvophyceae (Chlorophyta). Microorganisms 9(8):1586. https://doi.org/10.3390/microorganisms9081586

De Jonckheere, J.F., Baumgartner, M., Opperdoes, F.R. and Stetter, K.O., 2009. Marinamoeba thermophila, a new marine heterolobosean amoeba growing at 50° C. European journal of protistology, 45(3), pp.231-236. https://doi.org/10.1016/j.ejop.2009.01.001

Dee, J.M., Mollicone, M., Longcore, J.E., Roberson, R.W., Berbee, M.L., 2015. Cytology and molecular phylogenetics of Monoblepharidomycetes provide evidence for multiple independent origins of the hyphal habit in the Fungi. Mycologia 107, 710–728. https://doi.org/10.3852/14-275

Dewel, R. A., J. D. Joines, and J. J. Bond. 1985. A new chytridiomycete parasitizing the tardigrade Milnesium tardigradum. Canad. J. Bot. 63:1525- 1534. https://doi.org/10.1139/b85-211

Dykstra M, Olive L. 1975. An unusual sorocarp-producing Protist. Mycologia 67 (4):873–879. https://doi.org/10.1080/00275514.1975.12019815

Dykstra, M. J. Porter, D. 1984. Diplophrys marina, a New Scale-Forming Marine Protist with Labyrinthulid Affinities. Mycologia 76(4):626. https://doi.org/10.2307/3793219

Eikrem W. et al. (2017) Haptophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_38-2

Eliáš, M., Amaral, R., Fawley, K.P., Fawley, M.W., Němcová, Y., Neustupa, J., Přibyl, P., Santos, L.M.A., Ševčíková, T., 2017. Eustigmatophyceae, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–39. https://doi.org/10.1007/978-3-319-32669-6_39-1

Embree, R.W. and Indoh, H., 1967. Aquamortierella, a new genus in the Mucorales. Bulletin of the Torrey Botanical Club, pp.464-467. https://doi.org/10.2307/2483563

Emerson, R., & Natvig, D. O. (1981). Adaptation of fungi to stagnant waters. In D. T. Wicklow & G. C. Carroll (Eds.), The fungal community, its organization and role in the ecosystem (pp. 109–128). New York: Marcel Dekker.

Farmer, M. A. (1993). Ultrastructure of Ditrichomonas honigbergii n. g., n. sp. (Parabasalia) and its relationships to amitochondrial protists. The Journal of Eukaryotic Microbiology 40:619–626. https://doi.org/10.1111/j.1550-7408.1993.tb06119.x

Fawley, K.P., Fawley, M.W., 2007. Observations on the diversity and ecology of freshwater Nannochloropsis (Eustigmatophyceae), with descriptions of new taxa. Protist 158(3): 325-336. https://doi.org/10.1016/j.protis.2007.03.003

Fawley, M.W., Jameson, I., Fawley, K.P., 2015. The phylogeny of the genus Nannochloropsis (Monodopsidaceae, Eustigmatophyceae), with descriptions of N. australis sp. nov. and Microchloropsis gen. nov. Phycologia 54(5): 545-552. https://doi.org/10.2216/15-60.1

Fell, J.W., Statzell, A.C., Hunter, I.L. and Phaff, H.J., 1969. Leucosporidium gen. n., the heterobasidiomycetous stage of several yeasts of the genus Candida. Antonie van Leeuwenhoek, 35(1), pp.433-462.

Figueroa‐Martinez, F., Nedelcu, A.M., Smith, D.R., Reyes‐Prieto, A., 2015. When the lights go out: the evolutionary fate of free‐living colorless green algae. New Phytol 206, 972–982. https://doi.org/10.1111/nph.13279

Foissner, W., 2000. A compilation of soil and moss ciliates (Protozoa, Ciliophora) from Germany, with new records and descriptions of new and insufficiently known species. European Journal of Protistology 36:253–283. https://doi.org/10.1016/S0932-4739(00)80003-6

Fritsch, F.E., 1944. Cladophorella calcicola nov. gen. et sp., a terrestrial member of the Cladophorales. Annals of Botany, 8(30/31), pp.157-171. https://www.jstor.org/stable/42908460

Gao, F., Warren, A., Zhang, Q., Gong, J., Miao, M., Sun, P., Xu, D., Huang, J., Yi, Z., Song, W., 2016. The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata). Scientific Reports 6:24874. https://doi.org/10.1038/srep24874

Garstecki, T., Brown, S., & De Jonckheere, J. F. (2005). Description of Vahlkampfia signyensis n. sp. (Heterolobosea), based on morphological, ultrastructural and molecular characteristics. European Journal of Protistology 41:119–127. https://doi.org/10.1016/j.ejop.2005.01.003

Gast, R.J., 2017. Centrohelida and Other Heliozoan-Like Protists, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–17. https://doi.org/10.1007/978-3-319-32669-6_28-1

Geisen, S., Bonkowski, M., Zhang, J. and De Jonckheere, J.F., 2015. Heterogeneity in the genus Allovahlkampfia and the description of the new genus Parafumarolamoeba (Vahlkampfiidae; Heterolobosea). European Journal of Protistology, 51(4), pp.335-349. https://doi.org/10.1016/j.ejop.2015.05.003

Glockling, S.L., Marshall, W.L., Gleason, F.H., 2013. Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea). Fungal Ecology 6, 237–247. https://doi.org/10.1016/j.funeco.2013.03.005

Glücksman, E., Snell, E.A., Berney, C., Chao, E.E., Bass, D. and Cavalier-Smith, T., 2011. The novel marine gliding zooflagellate genus Mantamonas (Mantamonadida ord. n.: Apusozoa). Protist, 162(2), pp.207-221. https://doi.org/10.1016/j.protis.2010.06.004

Gomaa F, Mitchell EAD, Lara E. 2013. Amphitremida (Poche, 1913) Is a New Major, Ubiquitous Labyrinthulomycete Clade. PLoS ONE 8(1): e53046. https://doi.org/10.1371/journal.pone.0053046

Gong, S., Li, Z., Zhang, F., Xiao, Y. and Cheng, H., 2018. Symbiochlorum hainanensis gen. et sp. nov.(Ulvophyceae, Chlorophyta) isolated from bleached corals living in the South China Sea. Journal of phycology, 54(6), pp.811-817. https://doi.org/10.1111/jpy.12779

Graf, L., Yang, E.C., Boo, G.H., Andersen, R.A., Yoon, H.S., 2020. Further investigations on the PHAEOTHAMNIOPHYCEAE using a multigene phylogeny, with descriptions of five new species. Journal of Phycology 56, 358–379. https://doi.org/10.1111/jpy.12950

Hall J.D., McCourt R. (2017) Zygnematophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_41-2

Hampl V. (2016) Preaxostyla. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_8-1

Hehenberger, E., Tikhonenkov, D.V., Kolisko, M., Del Campo, J., Esaulov, A.S., Mylnikov, A.P. and Keeling, P.J., 2017. Novel predators reshape holozoan phylogeny and reveal the presence of a two-component signaling system in the ancestor of animals. Current Biology, 27(13), pp.2043-2050. https://doi.org/10.1016/j.cub.2017.06.006

Heiss, A.A., Brown, M.W., Simpson, A.G.B., 2016. Apusomonadida, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–27. https://doi.org/10.1007/978-3-319-32669-6_15-1

Ho, H. H., & Jong, S. C. (1990). Halophytophthora gen. nov., a new member of the family Pythiaceae. Mycotaxon 19:377–382.

Hoef-Emden, K., 2005. Multiple Independent Losses of Photosynthesis and Differing EvolutionaryRates in the Genus Cryptomonas (Cryptophyceae): Combined Phylogenetic Analyses of DNA Sequences of the Nuclear and the Nucleomorph Ribosomal Operons. J Mol Evol 60, 183–195. https://doi.org/10.1007/s00239-004-0089-5

Hoef-Emden, K., Archibald, J.M., 2016. Cryptophyta (Cryptomonads), in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–41. https://doi.org/10.1007/978-3-319-32669-6_35-1

Holzinger, A., Lütz, C., & Karsten, U. (2011). Desiccation stress causes structural and ultrastructural alterations in the aeroterrestrial green alga Klebsormidium crenulatum (Klebsormidiophyceae, Streptophyta) isolated from an alpine soil crust. Journal of Phycology, 47, 591–602. https://doi.org/10.1111/j.1529-8817.2011.00980.x

Horiguchi T. (2016) Raphidophyceae (Raphidophyta). In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_37-1

Howe, A.T., Bass, D., Scoble, J.M., Lewis, R., Vickerman, K., Arndt, H., Cavalier-Smith, T., 2011. Novel Cultured Protists Identify Deep-branching Environmental DNA Clades of Cercozoa: New Genera Tremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia. Protist 162, 332–372. https://doi.org/10.1016/j.protis.2010.10.002

Huang, J.-H., Chen, C.-Y., Lin, Y.-H., Ann, P.-J., Huang, H.-C., & Chung, W.-H. (2012). Six new species of Pythiogeton in Taiwan, with an account of the molecular phylogeny of this genus. Mycoscience, 54:130–147. https://doi.org/10.1016/j.myc.2012.09.007

Ichinomiya, M., dos Santos, A.L., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., de Vargas, C., Noël, M.-H., Vaulot, D., Kuwata, A., 2016. Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J 10, 2419–2434. https://doi.org/10.1038/ismej.2016.38

Jaške, K., Barcytė, D., Pánek, T., Ševčíková, T., Eliášová, A., Eliáš, M., 2022. The net-like heterotrophic amoeba Leukarachnion salinum sp. nov. (Ochrophyta, Stramenopiles) has a cryptic plastid. bioRxiv.\ https://doi.org/10.1101/2022.04.05.487141

Jee HJ, Ho HH, Cho WD, 2000. Pythiogeton zeae sp. nov. causing root and basal stalk rot of corn in Korea. Mycologia 92: 522e527. https://doi.org/10.1080/00275514.2000.12061188

Kachalkin, A.V., 2014. Yeasts of the White Sea intertidal zone and description of Glaciozyma litorale sp. nov. Antonie van Leeuwenhoek, 105(6), pp.1073-1083. https://doi.org/10.1007/s10482-014-0165-9

Kai, A., Yoshii, Y., Nakayama, T. and Inouye, I., 2008. Aurearenophyceae classis nova, a new class of Heterokontophyta based on a new marine unicellular alga Aurearena cruciata gen. et sp. nov. inhabiting sandy beaches. Protist, 159(3), pp.435-457. https://doi.org/10.1016/j.protis.2007.12.003

Kawai H., Henry E.C. (2016) Phaeophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_31-1 https://doi.org/10.1007/978-3-319-32669-6_31-1

Keeling, P.J., 2016. Chlorarachniophytes, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–17. https://doi.org/10.1007/978-3-319-32669-6_34-1

Kirill A. Mikrjukov & Irina Milyutina (2001) Heliozoa as a component of marine Microbenthos: A study of heliozoa of the White Sea, Ophelia 54(1):51-73. https://doi.org/10.1080/00785326.2001.10409455

Kostygov, A.Y., Karnkowska, A., Votýpka, J., Tashyreva, D., Maciszewski, K., Yurchenko, V., Luke, J., 2021. Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses. Open Biology 11:200407. https://doi.org/10.1098/rsob.200407

Kristiansen, J., Škaloud, P., 2016. Chrysophyta, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–38. https://doi.org/10.1007/978-3-319-32669-6_43-1

Kubanek J, Jensen PR, Keifer PA, Sullards MC, Collins DO, Fenical W. 2003. Seaweed resistance to microbial attack: a targeted chemical defence against marine fungi. Proc. Natl. Acad. Sci. USA 100: 6916–21. https://doi.org/10.1073/pnas.1131855100

Kulda J., Nohýnková E., Čepička I. (2016) Retortamonadida (with Notes on Carpediemonas-Like Organisms and Caviomonadidae). In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_3-1

Küpper FC, Maier I, Müller DG, Loiseaux-de Goer S, Guillou L. 2006. Phylogenetic affinities of two eukaryotic pathogens of marine macroalgae, Eurychasma dicksonii (Wright) Magnus and Chytridium polysiphoniae Cohn. Cryptogam. Algol. 27:165–84

Leliaert, F., Smith, D.R., Moreau, H., Herron, M.D., Verbruggen, H., Delwiche, C.F., De Clerck, O., 2012. Phylogeny and Molecular Evolution of the Green Algae. Critical Reviews in Plant Sciences 31:1–46. https://doi.org/10.1080/07352689.2011.615705

Lepelletier, F., Karpov, S. A., Alacid, E., LePanse, S., Bigeard, E., Garces, E., Jeanthon, C., & Guillou, L. 2014. Dinomyces arenysensis gen. et sp. nov. (Rhizophydiales, Dinomycetaceae fam. nov.), a chytrid infecting marine dinoflagellates. Protist 165:230–244. https://doi.org/10.1016/j.protis.2014.02.004

Lester R.J.G., Hine P.M. (2017) Paramyxida. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_21-1

Lhee, D., Ha, J. S., Kim, S., Park, M. G., Bhattacharya, D., & Yoon, H. S. (2019). Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species. Scientific reports, 9(1), 2560. https://doi.org/10.1038/s41598-019-38621-8

Li, S., Tan, H., Liu, B., Zhu, H., Hu, Z., Liu, G., 2021. Watanabeales ord. nov. and twelve novel species of Trebouxiophyceae (Chlorophyta). Journal of Phycology 57, 1167–1186. https://doi.org/10.1111/jpy.13165

Lobban, C.S., Honda, D., Chihara, M. and Schefter, M., 1995. Chrysocystis fragilis gen. nov., sp. nov.(Chrysophyceae, Sarcinochrysidales), with Notes on Other Macroscopic. Micronesica, 28(1), pp.91-102.

Lokhorst, G.M., Star, W. and Lukešová, A., 2000. The new species Hormidiella attenuata (Klebsormidiales), notes on morphology and reproduction. Algological Studies/Archiv für Hydrobiologie, Supplement Volumes, pp.11-27. https://doi.org/10.1127/algol_stud/100/2000/11

Lukešová S, Karlicki M, Tomečková Hadariová L, Szabová J, Karnkowska A, Hampl V. 2020. Analyses of environmental sequences and two regions of chloroplast genomes revealed the presence of new clades of photosynthetic euglenids in marine environments. Environ. Microbiol. Rep. 12:78–91. https://doi.org/10.1111/17582229.12817

Maistro S., Broady P., Andreoli C., Negrisolo E. (2016) Xanthophyceae. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_30-1

McCauley, L.A.R., Wehr, J.D., 2007. Taxonomic reappraisal of the freshwater brown algae Bodanella, Ectocarpus, Heribaudiella, and Pleurocladia (Phaeophyceae) on the basis of rbcL sequences and morphological characters. Phycologia 46, 429–439. https://doi.org/10.2216/05-08.1

McCauley, Linda Anne Roy. (2002) Phylogenetic Relationships of Freshwater Brown Algae (Phaeophycean) Based on Rubisco Large Subunit and Ribosomal DNA Sequences. ETD Collection for Fordham University. AAI13853687. https://research.library.fordham.edu/dissertations/AAI13853687

McCourt, R.M., Karol, K.G., Hall, J.D., Casanova, M.T., Grant, M.C., 2017. Charophyceae (Charales), in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–19. https://doi.org/10.1007/978-3-319-32669-6_40-2

Mikhailyuk TI, Sluiman HJ, Massalski A, Mudimu O, Demchenko EM, Kondratyuk SY, Friedl T. 2008. New streptophyte green algae from terrestrial habitats and an assessment of the genus Interfilum (Klebsormidiophyceae, Streptophyta). J Phycol. 44(6):1586-603. https://doi.org/10.1111/j.1529-8817.2008.00606.x

Mikhailyuk, T., Lukešová, A., Glaser, K., Holzinger, A., Obwegeser, S., Nyporko, S., Friedl, T., & Karsten, U. (2018). New Taxa of Streptophyte Algae (Streptophyta) from Terrestrial Habitats Revealed Using an Integrative Approach. Protist, 169(3), 406–431. https://doi.org/10.1016/j.protis.2018.03.002

Mikrjukov, K. A. & Patterson, D. J. 2001. Taxonomy and phylogeny of Heliozoa. III. Actinophryids. Acta. Protozool. 40: 3–25.

Mikrujkov, K. A. 1999. Taxonomic revision of scale-bearing heliozoon-like amoebae (Pompholyxophryidae, Rotosphaerida). Acta Protozoologica 38:119-131.

Murtagh, G. J., Dyer, P. S., Rogerson, A., Nash, G. V. & Laybourn-Parry, J. 2002. A new species of Tetramitus in the benthos of a saline antarctic lake. Eur. J. Protistol. 37:437–443. https://doi.org/10.1078/0932-4739-00836

Nagahama T, Hamamoto M, Nakase T, Takaki Y, Horikoshi K. 2003. Cryptococcus surugaensis sp. nov., a novel yeast species from sediment collected on the deep-sea floor of Suruga Bay. Int J Syst Evol Microbiol. 53 (Pt 6):2095-8. http://doi.org/10.1099/ijs.0.02712-0

Nakayama, T., 2015. Biology, Diversity and Ecology of Free-Living Heterotrophic Flagellates, in: Ohtsuka, S., Suzaki, T., Horiguchi, T., Suzuki, N., Not, F. (Eds.), Marine Protists. Springer Japan, Tokyo, pp. 63–87. https://doi.org/10.1007/978-4-431-55130-0_4

Nan, F., Feng, J., Lv, J. et al. Origin and evolutionary history of freshwater Rhodophyta: further insights based on phylogenomic evidence. Sci Rep 7, 2934 (2017). https://doi.org/10.1038/s41598-017-03235-5

Newell, S. Y., Cefalu, R., & Fell, J. W. (1977). Myzocytium, Haptoglossa, and Gonimochaete (fungi) in littoral marine nematodes. Bulletin of Marine Science 27:177–207.

Nitsche, F. (2014). Stephanoeca arndti spec. nov. - First cultivation success including molecular and autecological data from a freshwater acanthoecid choanoflagellate from Samoa. European Journal of Protistology, 50, 412–421. https://doi.org/10.1016/j.ejop.2014.03.004

Nyvall, P., Pedersén, M., & Longcore, J. E. 1999. Thalassochytrium gracilariopsidis (Chytridiomycota), gen. et sp. nov., endosymbiotic in Gracilariopsis sp. (Rhodophyceae). Journal of Phycology 35:176–185. https://doi.org/10.1046/j.1529-8817.1999.3510176.x

Oborník, M., Modrý, D., Lukeš, M., Černotíková-Stříbrná, E., Cihlář, J., Tesařová, M., ... & Lukeš, J. (2012). Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef. Protist, 163(2), 306-323. http://doi.org/10.1016/j.protis.2011.09.001

Okamura, T. and Kondo, R., 2015. Suigetsumonas clinomigrationis gen. et sp. nov., a novel facultative anaerobic nanoflagellate isolated from the meromictic Lake Suigetsu, Japan. Protist, 166(4), pp.409-421. https://doi.org/0.1016/j.protis.2015.06.003

Olive, L. S. 1980. Caulochytrium protostelioides sp. nov., a New Chytrid with Aerial Sporangia. American Journal of Botany 67(4):568-574. https://doi.org/10.2307/2442298

Pánek T., Simpson A.G.B., Brown M.W., Dexter Dyer B. (2016) Heterolobosea. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_10-1

Pánek, T., Ptáčková, E., Čepička, I., 2014. Survey on diversity of marine/saline anaerobic Heterolobosea (Excavata: Discoba) with description of seven new species. International Journal of Systematic and Evolutionary Microbiology 64:2280–2304. https://doi.org/10.1099/ijs.0.063487-0

Pánek, T., Simpson, A. G. B., Hampl, V., & Čepička, I. (2014). Creneis carolina gen. et sp. nov. (Heterolobosea), a novel marine anaerobic protist with strikingly derived morphology and life cycle. Protist 165:542–567. https://doi.org/10.1016/j.protis.2014.05.005

Parkinson, P., 2002. Ontogeny v. Phylogeny: the strange case of the silicoflagellates. Constancea, 83(18), pp.1-42.

Paul, M. 2012. Acanthocorbis mongolica nov. spec.: Description of the first freshwater loricate choanoflagellate (Acanthoecida) from a Mongolian lake. European Journal of Protistology, 48, 1–8. https://doi.org/10.1016/j.ejop.2011.07.001

Peters, M.C., Andersen, R.A., 1993. The fine structure and scale formation of Chrysolepidomonas dendrolepidota gen. et sp. nov. (Chrysolepidomonadaceae fam. nov., Chrysophyceae). J. Phycol. 29, 469–475. https://doi.org/10.1111/j.1529-8817.1993.tb00148.x

Powell M.J. (2016) Blastocladiomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_17-1

Powell M.J. 1993. Looking at Mycology with a Janus Face: A Glimpse at Chytridiomycetes Active in the Environment. Mycologia 85:1-20. https://doi.org/10.1080/00275514.1993.12026239

Price D.C., Steiner J.M., Yoon H.S., Bhattacharya D., Löffelhardt W. (2016) Glaucophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_42-1

Raghukumar, S. (1987). Occurrence of the Thraustochytrid, Corallochytrium limacisporum gen. et sp. nov. in the coral reef lagoons of the Lakshadweep Islands in the Arabian Sea. Bot. Mar. 30, 83–89. https://doi.org/10.1515/botm.1987.30.1.83

Redhead, S.A., 1977. The genus Neolecta (Neolectaceae fam. nov., Lecanorales, Ascomycetes) in Canada. Canadian Journal of Botany, 55(3), pp.301-306. https://doi.org/10.1139/b77-041

Richter, D.J., Nitsche, F., 2016. Choanoflagellatea, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–19. https://doi.org/10.1007/978-3-319-32669-6_5-1

Rindi, F., Lopez-Bautista, J.M., Sherwood, A.R. and Guiry, M.D., 2006. Morphology and phylogenetic position of Spongiochrysis hawaiiensis gen. et sp. nov., the first known terrestrial member of the order Cladophorales (Ulvophyceae, Chlorophyta). International Journal of Systematic and Evolutionary Microbiology, 56(4), pp.913-922. https://doi.org/10.1099/ijs.0.63977-0

Sawyer, T. K. 1980. Marine Amebae from Clean and Stressed Bottom Sediments of the Atlantic Ocean Gulf of Mexico. J.Protozool. 27(1):13-32.

Schnepf E. 1994. Light and electron microscopical observations in Rhynchopus coscinodiscivorus spec. nov., a colorless, phagotrophic euglenozoon with concealed flagella. Arch. Protistenk. 144:63–74. https://doi.org/10.1016/S0003-9365(11)80225-3

Sebastian Hess. 2017. Hunting for agile prey: trophic specialisation in leptophryid amoebae (Vampyrellida, Rhizaria) revealed by two novel predators of planktonic algae, FEMS Microbiology Ecology 93(9):fix104. https://doi.org/10.1093/femsec/fix104

Shiratori, T., & Ishida, K.-I. (2016). Entamoeba marina n. sp.; a new species of Entamoeba isolated from tidal flat sediment of Iriomote Island, Okinawa, Japan. Journal of Eukaryotic Microbiology 63:280–286. https://doi.org/10.1111/jeu.12276

Shubert, E. and Gärtner, G., 2015. Nonmotile Coccoid and Colonial Green Algae. Freshwater Algae of North America, pp.315-373. https://doi.org/10.1016/B978-0-12-385876-4.00007-4

Siemensma F. J. (1991). Klasse Heliozoa Haeckel, 1866. - In F.C. Page & FJ. Siemensma (eds.). Nackte Rhizopoda und Heliozoea. Protozoenfauna 2, pp. 171-297. Gustav Fischer Verlag, Stuttgart.

Simpson A.G.B. (2016) Jakobida. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_6-1

Simpson, A. G., & Patterson, D. J. (1996). Ultrastructure and identification of the predatory flagellate Colpodella pugnax Cienkowski (Apicomplexa) with a description of Colpodella turpis n. sp. and a review of the genus. Systematic Parasitology 33(3):187-198.

Škaloud, P., Kalina, T., Nemjová, K., De Clerck, O. and Leliaert, F., 2013. Morphology and phylogenetic position of the freshwater green microalgae Chlorochytrium (Chlorophyceae) and Scotinosphaera (Scotinosphaerales, ord. nov., Ulvophyceae). Journal of Phycology, 49(1), pp.115-129. https://doi.org/10.1111/jpy.12021

Stephenson S.L., Schnittler M. (2016) Myxomycetes. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_44-1

Takahashi Y, Yoshida M, Inouye I, Watanabe MM. 2014. Diplophrys mutabilis sp. nov., a new member of Labyrinthulomycetes from freshwater habitats. Protist 165(1):50-65. http://doi.org/10.1016/j.protis.2013.10.001

Takishita, K., Kakizoe, N., Yoshida, T., & Maruyama, T. 2010. Molecular evidence that phylogenetically diverged ciliates are active in microbial mats of deep‐sea cold‐seep sediment. Journal of Eukaryotic Microbiology 57(1):76-86. http://doi.org/10.1111/j.1550-7408.2009.00457.x

Tashyreva, D., Simpson, A., Prokopchuk, G., Škodová-Sveráková, I., Butenko, A., Hammond, M., George, E.E., Flegontova, O., Záhonová, K., Faktorová, D. and Yabuki, A., 2022. Diplonemids–A Review on “New “Flagellates on the Oceanic Block. Protist 173:125868. https://doi.org/10.1016/j.protis.2022.125868

Temraleeva, A., Moskalenko, S., Mincheva, E., Bukin, Y. and Sinetova, M., 2018. Spongiosarcinopsis terrestris gen. et sp. nov.(Chlorophyta, Chlorophyceae): a new genus of green algae from gray forest soil, Russia. Phytotaxa, 376(6), pp.291-300. http://dx.doi.org/10.11646/phytotaxa.376.6.4

Tragin, M., Vaulot, D. Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding. Sci Rep 9, 5190 (2019). https://doi.org/10.1038/s41598-019-41680-6

Turchetti, B., Thomas Hall, S.R., Connell, L.B., Branda, E., Buzzini, P., Theelen, B., Müller, W.H. and Boekhout, T., 2011. Psychrophilic yeasts from Antarctica and European glaciers: description of Glaciozyma gen. nov., Glaciozyma martinii sp. nov. and Glaciozyma watsonii sp. nov. Extremophiles, 15(5), pp.573-586. https://doi.org/10.1007/s00792-011-0388-x

Van Oye, P., 1956. On the Thecamoeban fauna of New Zealand with description of four new species. Hydrobiologia 8:16–37.

Visnovsky, G. & P. M. Novis, 2012. Novel alpine algae from New Zealand: Chlorophyta. Phytotaxa 39, 1-30. https://doi.org/10.11646/phytotaxa.39.1.1

von der Heyden, Sophie, Ema Chao & Thomas Cavalier-Smith (2004) Genetic diversity of goniomonads: an ancient divergence between marine and freshwater species. European Journal of Phycology 39(4):343-350. https://doi.org/10.1080/09670260400005567

Voos, J. R. & L. S. Olive. 1968. A new chytrid with aerial sporangia. Myco/ogia 60:730-733. https://doi.org/10.1080/00275514.1968.12018631

Votýpka J., Modrý D., Oborník M., Šlapeta J., Lukeš J. (2016) Apicomplexa. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_20-1

Walker G., Zadrobílková E., Čepička I. (2017) Archamoebae. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_11-1

Watanabe, S., Fučíková, K., Lewis, L.A. and Lewis, P.O., 2016. Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov.(Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza. American Journal of Botany, 103(5), pp.865-875. https://doi.org/10.3732/ajb.1500481

Wehr, J., 2015. Brown Algae, in: Freshwater Algae of North America: Ecology and Classification. pp. 851–871. https://doi.org/10.1016/B978-0-12-385876-4.00019-0

Wehr, J., Sheath, R., Kociolek, J.P. (Eds.), 2015. Freshwater Algae of North America - 2nd Edition. Academic Press.

Wetherbee, R., Bringloe, T.T., Costa, J.F., van de Meene, A., Andersen, R.A. and Verbruggen, H., 2021. New pelagophytes show a novel mode of algal colony development and reveal a perforated theca that may define the class. Journal of Phycology, 57(2), pp.396-411. https://doi.org/10.1111/jpy.13074-20-137

Wetherbee, R., Jackson, C.J., Repetti, S.I., Clementson, L.A., Costa, J.F., van de Meene, A., Crawford, S. and Verbruggen, H., 2019. The golden paradox–a new heterokont lineage with chloroplasts surrounded by two membranes. Journal of phycology, 55(2), pp.257-278. https://doi.org/10.1111/jpy.12822

Wolf, M., Buchheim, M., Hegewald, E., Krienitz, L. and Hepperle, D., 2002. Phylogenetic position of the Sphaeropleaceae (Chlorophyta). Plant Systematics and Evolution, 230(3), pp.161-171. https://doi.org/10.1007/s006060200002

Wujek DE, Pershon LE, Kadiri MO (2008) Description of new freshwater species of Thaumatomastix (Protista, Thaumatomonadida) from Nigeria, West Africa. Trop Freshwater Biol 17:13–20. https://doi.org/10.4314/tfb.v17i2.45810

Yoon H.S. et al. (2016) Rhodophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. https://doi.org/10.1007/978-3-319-32669-6_33-1

Yubuki, N., Céza, V., Cepicka, I., Yabuki, A., Inagaki, Y., Nakayama, T., Inouye, I., & Leander, B. S. (2010). Cryptic diversity of free-living parabasalids, Pseudotrichomonas keilini and Lacusteria cypriaca n. g., n. sp., as inferred from small subunit rDNA sequences. Journal of Eukaryotic Microbiology 57:554–561. https://doi.org/10.1111/j.1550-7408.2010.00509.x

Yubuki, N., Zadrobílková, E., Čepička, I. (2016). Ultrastructure and molecular phylogeny of Iotanema spirale gen. nov. et sp. nov., a new lineage of endobiotic Fornicata with strikingly simplified ultrastructure. Journal of Eukaryotic Microbiology. https://doi.org/0.1111/jeu.12376.