cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.andpdn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis hirtzii Dodson"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011111-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nm7u7j
title: Occurrence Download

description: A dataset containing 751 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Praxelis capillaris (DC.) Sch.Bip."
 ]
}

 The dataset includes 751 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094446-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bq2muc
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis fargesii Finet"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011040-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epps4m
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Evotella rubiginosa (Sond. ex Bolus) Kurzweil & H.P.Linder"
 ]
}

 The dataset includes 46 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208354-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmsp2v
title: Occurrence Download

description: A dataset containing 1232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "TaxonKey is Koeleria glauca (Spreng.) DC."
 ]
}

 The dataset includes 1232 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010437-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.admjv9
title: Occurrence Download

description: A dataset containing 12027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eragrostis multicaulis Steud.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12027 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068389-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqnks5
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis ferruginea Lindl."
 ]
}

 The dataset includes 32 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011041-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3rgtq
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prasophyllum venustum D.L.Jones & D.T.Rouse"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094438-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fgs5z
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Evolvulus villosus Ruiz & Pav."
 ]
}

 The dataset includes 102 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208346-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpe2he
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Notoseris scandens (Hook.fil. ex Benth. & Hook.fil.) N.Kilian"
 ]
}

 The dataset includes 84 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094476-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cf7muw
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptosiphon rattanii (A.Gray) J.M.Porter & L.A.Johnson"
 ]
}

 The dataset includes 99 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009961-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8w9w2d
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monopsis belliflora E.Wimm."
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043134-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kru37r
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brexiella acutifolia H.Perrier"
 ]
}

 The dataset includes 31 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208351-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t359b3
title: Occurrence Download

description: A dataset containing 700627 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sparidae"
 ]
}

 The dataset includes 700627 records from 617 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127255-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xawc6j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Evonymopsis mexicanus Benth."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208352-230224095556074/datasets/export for details.
DOI: 10.15468/dl.dw4t7r
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dolichoderus affinis Emery, 1889"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025913-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vyzqjp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis firma J.J.Sm."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011053-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3byqw
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Notoseris macilenta (Vaniot & H.Lév.) N.Kilian"
 ]
}

 The dataset includes 108 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094469-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuf9ut
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prenanthes affinis Jungh."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094460-230530130749713/datasets/export for details.
DOI: 10.15468/dl.87f4xd
title: Occurrence Download

description: A dataset containing 6101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Lepidoptera",
 "Year 2018-2018"
 ]
}

 The dataset includes 6101 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208338-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgbvsw
title: Occurrence Download

description: A dataset containing 364 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis formosana Rchb.f."
 ]
}

 The dataset includes 364 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011061-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3uvmxj
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monopsis flava (C.Presl) E.Wimm."
 ]
}

 The dataset includes 43 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043138-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hkuj6
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria flocculosa Epling & Mathias"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121452-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dw4avc
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Evolvulus squamosus Britton"
 ]
}

 The dataset includes 118 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208340-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3f26ef
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monopsis malvacea E.Wimm."
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043141-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cj5fc
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linaria algarviana Chav."
 ]
}

 The dataset includes 231 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009976-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cfvzh
title: Occurrence Download

description: A dataset containing 414084 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Silene flos-cuculi (L.) Greuter & Burdet"
 ]
}

 The dataset includes 414084 records from 1421 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208349-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26008/1912/bco-dmo.906562.1
title: Water characteristics measured in Narragansett Bay over two years, from March 2021 to March 2023

description: This dataset includes basic water characteristics measured in Narragansett Bay (Rhode Island, USA) over two years as part of a study of the dynamics of marine cyanobacteria (Synechococcus) and viruses infecting cyanobacteria (cyanophage) in this estuarine ecosystem. The project principal investigators include Nathan Ahlgren (Clark University) and Marcie Marston (Roger Williams University), and the latter collected the data and water with the assistance of students and/or technicians. Water was sampled and measured once per week for a span of two years in total. Water was sampled from a dock located on the campus of Roger Williams University (RWU) at an approximate latitude and longitude coordinates of 41.649737, -71.256378. Water was collected on an incoming tide in the morning and the following parameters were measured: water temperature, salinity, in situ chlorophyll a, nitrate + nitrite, phosphate, and silicate. Water samples were collected and preserved for measurement of Synechococcus abundance by flow cytometry at a later date.
DOI: 10.26008/1912/bco-dmo.918860.1
title: Diatom (Thalassiosira pseudonana) cell information from experiments designed to study single-cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms conducted in December of 2022

description: This dataset includes cell information for diatom Thalassiosira pseudonana grown during experiments conducted as part of a study of &quot;Single-Cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms.&quot;  See &quot;Related Datasets&quot; section for T. pseudonana physiological data and gene information collected as part of the same study and experiments.


Study description: 

Diatoms (Bacillariophyceae) are unicellular photosynthetic algae, accounting for about 40% of total marine primary production (equivalent to terrestrial rainforests) and critical ecological players in the contemporary ocean. Diatoms can form enormous blooms in the ocean that can be seen from space and are the base of food webs in coastal and upwelling systems, support essential fisheries, and are central to the biogeochemical cycling of important nutrients such as carbon and silicon. Over geological time, diatoms have influenced the world's climate by changing the carbon flux into the oceans. 


Diatoms have traditionally been studied on a population level. Growth is often measured by the total increase in biomass, and gene expression is analyzed by isolating mRNA from thousands or millions of cells. These methods generate a valuable analysis on the population’s average functioning; however, they fail to show how each individual diatom cell contributes to the population phenotype. Bulk transcriptomes confound different stages and variability of cell states in heterogeneous populations. By contrast, single-cell transcriptomics measures gene expression in thousands of individual diatoms providing a quantitative and ultrahigh-resolution picture of transient cell states in population fractions enabling the reconstruction of the various phenotypic trajectories. Thus, the single-cell physiological and molecular parameters analysis allows an unsupervised assessment of cell heterogeneity within a population—a new dimension in diatoms and phytoplankton in general. 


In this dataset, we examine the model diatom Thalassiosira pseudonana clonal cells grown in different nitrogen conditions, at the single cell level when grown in a light: dark cycle (12:12 h). Nitrogen is the major limiting nutrient for primary production and growth in the ocean’s surface, specifically for diatoms and the food webs they support. We investigate nutrient limitation, starvation and recovery. We used droplet-based, single-cell transcriptomics to analyze ten samples in two stages.  In the first stage (&quot;starvation&quot;), six samples were collected over four days of culture as nutrient levels decreased.  In the second stage (&quot;recovery&quot;), four samples were collected over twelve hours after nutrients were replenished.
DOI: 10.26008/1912/bco-dmo.918811.1
title: Size-fractionated major, minor, & trace particle composition and concentration from Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) on R/V Roger Revelle from Sept to Oct 2018

description: Size-fractionated particles were collected by in-situ filtration on the U.S. GEOTRACES GP15 Pacific Meridional Transect (PMT), which sampled from Alaska to Tahiti along 152°W Sept-Nov 2018. The PMT expedition was divided into two legs, with cruise IDs RR1814 and RR1815. This dataset results from leg 1, RR1814; data from RR1815 are available in a separate BCO-DMO dataset.

This dataset includes a suite of trace elements (e.g. iron, aluminum, zinc, manganese, cadmium, copper, cobalt, titanium, and barium), some of which are required for life, and others that act as tracers of oceanographic processes, and major biologically-produced carrier phases (e.g. particulate organic carbon and the biominerals, calcium carbonate and biogenic silica) in the size-fractionated particles collected from the US PMT section. Along with collaboration with researchers from other institutions, these data are used to assess the relative importance of particle concentration, composition, and size distribution on the cycling and removal of trace elements and their isotopes (TEIs).
DOI: 10.26008/1912/bco-dmo.919139.1
title: Size-fractionated major, minor, & trace particle composition and concentration from Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) on R/V Roger Revelle from Oct to Nov 2018

description: Size-fractionated particles were collected by in-situ filtration on the U.S. GEOTRACES GP15 Pacific Meridional Transect (PMT), which sampled from Alaska to Tahiti along 152°W Sept-Nov 2018. The PMT expedition was divided into two legs, with cruise IDs RR1814 and RR1815. This dataset results from leg 2, RR1815; data from RR1814 are available in a separate BCO-DMO dataset.

This dataset includes a suite of trace elements (e.g. iron, aluminum, zinc, manganese, cadmium, copper, cobalt, titanium, and barium), some of which are required for life, and others that act as tracers of oceanographic processes, and major biologically-produced carrier phases (e.g. particulate organic carbon and the biominerals, calcium carbonate and biogenic silica) in the size-fractionated particles collected from the US PMT section. Along with collaboration with researchers from other institutions, these data are used to assess the relative importance of particle concentration, composition, and size distribution on the cycling and removal of trace elements and their isotopes (TEIs).
DOI: 10.26008/1912/bco-dmo.918545.1
title: Organic alkalinity data from estuary transects in Coastal Gulf of Maine (Pleasant, Maine; St. John, New Brunswick) in May and October of 2018 and 2019

description: Four organic alkalinity estuary transects, in May and October of 2018 and 2019, were completed in the Pleasant (Maine, USA) and St. John (New Brunswick, Canada) estuaries.  Discrete samples were collected at intervals of salinity along each estuary.  An underway measurements system was also operated during each transect (see &quot;Related Datasets&quot; section).  Discrete samples were analyzed via a number of methods described below.  Underway measurements were collected using the procedures described in Hunt et al. (2013).

Organic alkalinity is a poorly understood component of the estuarine and coastal ocean acid-base system.  This lack of understanding makes assessment of ocean acidification vulnerability and inorganic carbon dynamics more difficult.  However, the methods used to quantify organic alkalinity and its effects on the acid-base system are not standardized.  In this work we examined several approaches for the measurement of organic alkalinity, and their application to inorganic carbon dynamics.
DOI: 10.26008/1912/bco-dmo.918841.1
title: Diatom (Thalassiosira pseudonana) physiological data from experiments designed to study single-cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms conducted in December of 2022

description: This dataset includes physiological data for diatom Thalassiosira pseudonana grown during experiments conducted as part of a study of &quot;Single-Cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms.&quot;  See &quot;Related Datasets&quot; section for T. pseudonana gene and cell information collected as part of the same study and experiments.


Study description: 

Diatoms (Bacillariophyceae) are unicellular photosynthetic algae, accounting for about 40% of total marine primary production (equivalent to terrestrial rainforests) and critical ecological players in the contemporary ocean. Diatoms can form enormous blooms in the ocean that can be seen from space and are the base of food webs in coastal and upwelling systems, support essential fisheries, and are central to the biogeochemical cycling of important nutrients such as carbon and silicon. Over geological time, diatoms have influenced the world's climate by changing the carbon flux into the oceans. 

Diatoms have traditionally been studied on a population level. Growth is often measured by the total increase in biomass, and gene expression is analyzed by isolating mRNA from thousands or millions of cells. These methods generate a valuable analysis on the population’s average functioning; however, they fail to show how each individual diatom cell contributes to the population phenotype. Bulk transcriptomes confound different stages and variability of cell states in heterogeneous populations. By contrast, single-cell transcriptomics measures gene expression in thousands of individual diatoms providing a quantitative and ultrahigh-resolution picture of transient cell states in population fractions enabling the reconstruction of the various phenotypic trajectories. Thus, the single-cell physiological and molecular parameters analysis allows an unsupervised assessment of cell heterogeneity within a population—a new dimension in diatoms and phytoplankton in general. 

In this dataset, we examine the model diatom Thalassiosira pseudonana clonal cells grown in different nitrogen conditions, at the single cell level when grown in a light: dark cycle (12:12 h). Nitrogen is the major limiting nutrient for primary production and growth in the ocean’s surface, specifically for diatoms and the food webs they support. We investigate nutrient limitation, starvation and recovery. We used droplet-based, single-cell transcriptomics to analyze ten samples in two stages.  In the first stage (&quot;starvation&quot;), six samples were collected over four days of culture as nutrient levels decreased.  In the second stage (&quot;recovery&quot;), four samples were collected over twelve hours after nutrients were replenished.