cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11499447.v1
title: Data exploring the effects of food availability on growth of sea bass reared under environmental stressors of ocean acidification and warming

description: This dataset contains four Excel <b>.xlsx </b>spreadsheets of measurements relating to the combined effects of food availability, ocean acidification and ocean warming (OAW) on fish growth.<br>Fish (sea bass, <i>Dicentrarchus labrax</i>) were reared in four treatment groups, defined by water temparatures of 15°C or 20°C and concentration of carbon dioxide (<i>P</i>CO2) of 650 µatm (ambient acidification) or 1750 µatm (high acidification), all under <i>ad libitum</i> feeding. Following this, feeding trials were performed with <i>ad libitum </i>and 25% of <i>ad libitum </i>rations at ambient and elevated (+1100 µatm) levels of <i>P</i>CO2.<br>Details of the four spreadsheets are as follows:<br>- <b>Data_Daily Food.xlsx</b>: Mass (g) of food distributed per tank per day during the feeding trial. Abbreviations: AL, <i>ad libitum</i>; 25AL, 25% <i>ad libitum</i>; Tot_fish, Total number of the fish in the tank.- <b>Data_Enzymes.xlsx</b>: Values of total and specific activities of trypsin, phosphatase alkaline (PA), amylase and aminopeptidase N (LAP) measured on randomly selected fish. Abbreviations: AL, <i>ad libitum</i>; 25AL, 25% <i>ad libitum</i>; bb, Brush border; scrap, Scrapping.<br>- <b>Data_Mass.xlsx</b>: Individual mass of the fish at the beginning and the end of the feeding trial. Abbreviations: AL, <i>ad libitum</i>; 25AL, 25% <i>ad libitum</i>; Fish_nber, Fish number; Mass_1, Initial mass; Mass_2, Final Mass.<br>- <b>Data_Stomach pH.xlsx</b>: pH values of the stomach of randomly selected fish, measured post feeding, using a pH sensor. Abbreviations: AL, <i>ad libitum</i>; 25AL, 25% <i>ad libitum</i>; Fish_nber, Fish number.<br><br>The related publication aimed to determine whether the provision of <i>ad libitum </i>rations may provide ample energy to organisms in multiple stressor environments, thereby allowing them to compensate for potential negative impact of sub-optimal levels due to the stressors (in this case, temperature and/or <i>P</i>CO2) on energy acquisition, dissipation and allocation.
DOI: 10.6084/m9.figshare.11499360
title: Syngnathiformes immune gene alignments

description: Alignments of selected immune genes from various <i>Syngnathiformes</i> species.<br>
DOI: 10.6084/m9.figshare.11499360.v1
title: Syngnathiformes immune gene alignments

description: Alignments of selected immune genes from various <i>Syngnathiformes</i> species.<br>
DOI: 10.6084/m9.figshare.11499162
title: DATABASEIgE.xlsx

description: Cohort of patients including allergic, and non allergic asthmatics, and healthy subjects. Includes clinical, demographic data, and levels of IgE in blood and induced sputum (total and specific for Der p1)
DOI: 10.6084/m9.figshare.11499162.v1
title: DATABASEIgE.xlsx

description: Cohort of patients including allergic, and non allergic asthmatics, and healthy subjects. Includes clinical, demographic data, and levels of IgE in blood and induced sputum (total and specific for Der p1)
DOI: 10.6084/m9.figshare.11498907
title: Paleomagnetic data of the Upper Cretaceous red-beds of the eastern edge of Sichuan Basin

description: The paleomagnetic data obtained from the Upper Cretaceous red-beds from three area on the southeastern edge of Sichuan Basin. The GC is the datasets from the Chishui section. The LZ-LJ is the datasets from the Luzhou section. The HF is the datasets from the Fubao section.
DOI: 10.6084/m9.figshare.11498907.v1
title: Paleomagnetic data of the Upper Cretaceous red-beds of the eastern edge of Sichuan Basin

description: The paleomagnetic data obtained from the Upper Cretaceous red-beds from three area on the southeastern edge of Sichuan Basin. The GC is the datasets from the Chishui section. The LZ-LJ is the datasets from the Luzhou section. The HF is the datasets from the Fubao section.
DOI: 10.6084/m9.figshare.11498643
title: precipitation in observation

description: precipitation data created by the merger of the CMORPH and rain gauge observations.
DOI: 10.6084/m9.figshare.11498643.v1
title: precipitation in observation

description: precipitation data created by the merger of the CMORPH and rain gauge observations.
DOI: 10.6084/m9.figshare.11498628
title: Supplementary Material for: Effectiveness of an Emotional Working Memory Training in Borderline Personality Disorder: A Proof-of-Principle Study

description: Medicine
DOI: 10.6084/m9.figshare.11498571
title: Combined scattering of radiation belt electrons by low-frequency hiss: Cyclotron, Landau, and bounce resonances

description: This file consists of seven folders. The data folders of five figures in the paper name as DataToFigure01, DataToFigure02, DataToFigure03, DataToFigure04 and DataToFigure05, respectively. The data folders of two support figures of the paper name as DataToFigureS01 and DataToFigureS02, respectively.
DOI: 10.6084/m9.figshare.11498568
title: Data

description: Raw data <b>Assessing the clinical applicability of intratendinous Genipin injections: Mechanical augmentation and spatial distribution in an ex vivo degenerative tendon model</b>
DOI: 10.6084/m9.figshare.11498571.v1
title: Combined scattering of radiation belt electrons by low-frequency hiss: Cyclotron, Landau, and bounce resonances

description: This file consists of seven folders. The data folders of five figures in the paper name as DataToFigure01, DataToFigure02, DataToFigure03, DataToFigure04 and DataToFigure05, respectively. The data folders of two support figures of the paper name as DataToFigureS01 and DataToFigureS02, respectively.
DOI: 10.6084/m9.figshare.11498568.v1
title: Data

description: Raw data <b>Assessing the clinical applicability of intratendinous Genipin injections: Mechanical augmentation and spatial distribution in an ex vivo degenerative tendon model</b>
DOI: 10.6084/m9.figshare.11498466
title: dsp_p

description: the dispersion curves used for phase velocity of Rayleigh wave. This is a compressed file format.
DOI: 10.6084/m9.figshare.11498466.v1
title: dsp_p

description: the dispersion curves used for phase velocity of Rayleigh wave. This is a compressed file format.
DOI: 10.6084/m9.figshare.11498331
title: Jupyter code for numerical results from Coupled flow and deformation fields due to a line load on a poroelastic half space: effect of surface stress and surface bending

description: In the past decade, many experiments have indicated that the surfaces of soft elastic solids can resist deformation by surface stresses. A common soft elastic solid is a hydrogel which consists of a polymer network swollen in water. Although experiments suggest that solvent flow in gels can be affected by surface stress, there is no theoretical analysis on this subject. Here we study the solvent flow near a line load acting on a linear poroelastic half space. The surface of this half space resists deformation by a constant, isotropic surface stress. It can also resist deformation by surface bending. The time-dependent displacement, stress and flow fields are determined using transform methods. Our solution indicates that the stress field underneath the line load is completely regularized by surface bending—it is bounded and continuous. For small surface bending stiffness, the line force is balanced by surface stresses; these forces form what is commonly known as ‘Neumann's triangle’. We show that surface stress reduces local pore pressure and inhibits solvent flow. We use our line load solution to simulate the relaxation of the peak which is formed by applying and then removing a line force on the poroelastic half space.
DOI: 10.6084/m9.figshare.11498331.v1
title: Jupyter code for numerical results from Coupled flow and deformation fields due to a line load on a poroelastic half space: effect of surface stress and surface bending

description: In the past decade, many experiments have indicated that the surfaces of soft elastic solids can resist deformation by surface stresses. A common soft elastic solid is a hydrogel which consists of a polymer network swollen in water. Although experiments suggest that solvent flow in gels can be affected by surface stress, there is no theoretical analysis on this subject. Here we study the solvent flow near a line load acting on a linear poroelastic half space. The surface of this half space resists deformation by a constant, isotropic surface stress. It can also resist deformation by surface bending. The time-dependent displacement, stress and flow fields are determined using transform methods. Our solution indicates that the stress field underneath the line load is completely regularized by surface bending—it is bounded and continuous. For small surface bending stiffness, the line force is balanced by surface stresses; these forces form what is commonly known as ‘Neumann's triangle’. We show that surface stress reduces local pore pressure and inhibits solvent flow. We use our line load solution to simulate the relaxation of the peak which is formed by applying and then removing a line force on the poroelastic half space.
DOI: 10.6084/m9.figshare.11498175
title: Tables S1 - S3 from Sexual frequency is associated with age of natural menopause: results from the Study of Women's Health Across the Nation

description: It is often observed that married women have a later age of natural menopause (ANM) than unmarried women; however, the reason for this association is unknown. We test an original hypothesis that sexual frequency acts as a bio-behavioural mediator between marital status and ANM. We hypothesize that there is a trade-off between continued ovulation and menopause based on the woman's chances of becoming pregnant. If a woman is sexually inactive, then pregnancy is impossible, and continued investment in ovulation would not be adaptive. In addition, we test an existing hypothesis that the observed relationship is due to the exposure to male pheromones. Data from 2936 women were drawn from 11 waves of the Study of Women's Health Across the Nation, which is a longitudinal study conducted in the United States. Using time-varying Cox regression, we found no evidence for the pheromone hypothesis. However, we did observe that women who reported to have sex weekly during the study period were 28% less likely to experience menopause than women who had sex less than monthly. This is an indication that ANM may be somewhat facultative in response to the likelihood of pregnancy.
DOI: 10.6084/m9.figshare.11498292
title: dsp_g

description: the dispersion curves used for group velocity of Rayleigh wave. This is a compressed file format.<br>
DOI: 10.6084/m9.figshare.11498172
title: RCode - Descriptive statistics, Cox regression & Model fitting from Sexual frequency is associated with age of natural menopause: results from the Study of Women's Health Across the Nation

description: It is often observed that married women have a later age of natural menopause (ANM) than unmarried women; however, the reason for this association is unknown. We test an original hypothesis that sexual frequency acts as a bio-behavioural mediator between marital status and ANM. We hypothesize that there is a trade-off between continued ovulation and menopause based on the woman's chances of becoming pregnant. If a woman is sexually inactive, then pregnancy is impossible, and continued investment in ovulation would not be adaptive. In addition, we test an existing hypothesis that the observed relationship is due to the exposure to male pheromones. Data from 2936 women were drawn from 11 waves of the Study of Women's Health Across the Nation, which is a longitudinal study conducted in the United States. Using time-varying Cox regression, we found no evidence for the pheromone hypothesis. However, we did observe that women who reported to have sex weekly during the study period were 28% less likely to experience menopause than women who had sex less than monthly. This is an indication that ANM may be somewhat facultative in response to the likelihood of pregnancy.
DOI: 10.6084/m9.figshare.11498172.v1
title: RCode - Descriptive statistics, Cox regression & Model fitting from Sexual frequency is associated with age of natural menopause: results from the Study of Women's Health Across the Nation

description: It is often observed that married women have a later age of natural menopause (ANM) than unmarried women; however, the reason for this association is unknown. We test an original hypothesis that sexual frequency acts as a bio-behavioural mediator between marital status and ANM. We hypothesize that there is a trade-off between continued ovulation and menopause based on the woman's chances of becoming pregnant. If a woman is sexually inactive, then pregnancy is impossible, and continued investment in ovulation would not be adaptive. In addition, we test an existing hypothesis that the observed relationship is due to the exposure to male pheromones. Data from 2936 women were drawn from 11 waves of the Study of Women's Health Across the Nation, which is a longitudinal study conducted in the United States. Using time-varying Cox regression, we found no evidence for the pheromone hypothesis. However, we did observe that women who reported to have sex weekly during the study period were 28% less likely to experience menopause than women who had sex less than monthly. This is an indication that ANM may be somewhat facultative in response to the likelihood of pregnancy.
DOI: 10.6084/m9.figshare.11498142
title: Deep-Learning-Based Components Identification for Raman Spectroscopy

description: Raman spectra contain abundant information from molecules but are difficult to analyze, especially for the mixtures. Deep-Learning-Based Components Identification for Raman Spectroscopy (DeepCID) has been proposed for the problem of components identification. Convolution Neural Network (CNN) models have been established to predict the presence of the components in the mixtures.
DOI: 10.6084/m9.figshare.11497845
title: MOESM3 of Reconstruction and analysis of a carbon-core metabolic network for Dunaliella salina

description: Additional file 3 Flux values, constraints, gene-protein reaction associations.
DOI: 10.6084/m9.figshare.11497845.v1
title: MOESM3 of Reconstruction and analysis of a carbon-core metabolic network for Dunaliella salina

description: Additional file 3 Flux values, constraints, gene-protein reaction associations.
DOI: 10.6084/m9.figshare.11497836
title: MOESM2 of Reconstruction and analysis of a carbon-core metabolic network for Dunaliella salina

description: Additional file 2 SBML file.
DOI: 10.6084/m9.figshare.11497836.v1
title: MOESM2 of Reconstruction and analysis of a carbon-core metabolic network for Dunaliella salina

description: Additional file 2 SBML file.
DOI: 10.6084/m9.figshare.11497827
title: MOESM1 of How do world and European standard populations impact burden of disease studies? A case study of disability-adjusted life years (DALYs) in Scotland

description: Additional file 1. Dataset containing number and rates of DALYs by cause of disease/injury, Scotland, 2014–16.
DOI: 10.6084/m9.figshare.11497827.v1
title: MOESM1 of How do world and European standard populations impact burden of disease studies? A case study of disability-adjusted life years (DALYs) in Scotland

description: Additional file 1. Dataset containing number and rates of DALYs by cause of disease/injury, Scotland, 2014–16.
DOI: 10.6084/m9.figshare.11497773
title: MOESM5 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 5: Table S5. Filtering results from whole exome sequencing for patient II.6 showing only homozygous mutations with a MAF
DOI: 10.6084/m9.figshare.11497767
title: MOESM4 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 4: Table S4. Filtering results from whole exome sequencing for patient II.5 showing only homozygous mutations with a MAF
DOI: 10.6084/m9.figshare.11497773.v1
title: MOESM5 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 5: Table S5. Filtering results from whole exome sequencing for patient II.6 showing only homozygous mutations with a MAF
DOI: 10.6084/m9.figshare.11497767.v1
title: MOESM4 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 4: Table S4. Filtering results from whole exome sequencing for patient II.5 showing only homozygous mutations with a MAF
DOI: 10.6084/m9.figshare.11497761
title: MOESM3 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 3: Table S3. Filtering results from whole exome sequencing for patient II.6 using the 150 genes panel from Supplementary TableÂ 1
DOI: 10.6084/m9.figshare.11497761.v1
title: MOESM3 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 3: Table S3. Filtering results from whole exome sequencing for patient II.6 using the 150 genes panel from Supplementary TableÂ 1
DOI: 10.6084/m9.figshare.11497752
title: MOESM2 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 2: Table S2. Filtering results from whole exome sequencing for patient II.5 using the 150 genes panel from Supplementary TableÂ 1
DOI: 10.6084/m9.figshare.11497752.v1
title: MOESM2 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 2: Table S2. Filtering results from whole exome sequencing for patient II.5 using the 150 genes panel from Supplementary TableÂ 1
DOI: 10.6084/m9.figshare.11497743
title: MOESM1 of Post-lingual non-syndromic hearing loss phenotype: a polygenic case with 2 biallelic mutations in MYO15A and MITF

description: Additional file 1: Table S1. List of hearing loss genes used for filtering variants
DOI: 10.6084/m9.figshare.11497719
title: MOESM7 of Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

description: Additional file 7: Table S4. Primer sequences used in the semi-quantitative rRT-PCR for HMPV detection. Note, the F gene-based rRT-PCR assays are different or separate for the two HMPV groups.
DOI: 10.6084/m9.figshare.11497719.v1
title: MOESM7 of Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

description: Additional file 7: Table S4. Primer sequences used in the semi-quantitative rRT-PCR for HMPV detection. Note, the F gene-based rRT-PCR assays are different or separate for the two HMPV groups.
DOI: 10.6084/m9.figshare.11497713
title: MOESM6 of Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

description: Additional file 6: Table S3. Information (GenBank accession, year and country of sample location) of the global sequences used in phylogenetic analyses. (CSV 2 kb)
DOI: 10.6084/m9.figshare.11497713.v1
title: MOESM6 of Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

description: Additional file 6: Table S3. Information (GenBank accession, year and country of sample location) of the global sequences used in phylogenetic analyses. (CSV 2 kb)
DOI: 10.6084/m9.figshare.11497707
title: MOESM5 of Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

description: Additional file 5: Table S2. Primer sequences used in RT-PCR for whole genome amplification. Primer nomenclature is described as follows: AF-11A1 indicates an A reaction, forward primer for amplicon 11, selected for genotype A1 (although it may function against the other 4 genotypes). Also listed are the primer sequence (5′ to 3′) the primer length, the melting temperature (calculated using the Santa Lucia algorithm (https://biopython.org/DIST/docs/api/Bio.SeqUtils.MeltingTemp-module.html) plus 3.7 C) to obtain the Breslauer values [33]) and the fraction of the primer that is G + C [34].
DOI: 10.6084/m9.figshare.11497707.v1
title: MOESM5 of Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

description: Additional file 5: Table S2. Primer sequences used in RT-PCR for whole genome amplification. Primer nomenclature is described as follows: AF-11A1 indicates an A reaction, forward primer for amplicon 11, selected for genotype A1 (although it may function against the other 4 genotypes). Also listed are the primer sequence (5′ to 3′) the primer length, the melting temperature (calculated using the Santa Lucia algorithm (https://biopython.org/DIST/docs/api/Bio.SeqUtils.MeltingTemp-module.html) plus 3.7 C) to obtain the Breslauer values [33]) and the fraction of the primer that is G + C [34].
DOI: 10.6084/m9.figshare.11497503
title: MOESM2 of Proteoglycan serglycin promotes non-small cell lung cancer cell migration through the interaction of its glycosaminoglycans with CD44

description: Additional file 2: Figure S2. Quantitation of SRGN-related GAGs and GAG disaccharide components in NSCLC cells. a LC-MS/MS profiles of HS and CS disaccharide standards. b LC-MS/MS profiles of HS and CS disaccharides derived from the CM of H1299/SRGN and H460/sh-CTRL cells.
DOI: 10.6084/m9.figshare.11497503.v1
title: MOESM2 of Proteoglycan serglycin promotes non-small cell lung cancer cell migration through the interaction of its glycosaminoglycans with CD44

description: Additional file 2: Figure S2. Quantitation of SRGN-related GAGs and GAG disaccharide components in NSCLC cells. a LC-MS/MS profiles of HS and CS disaccharide standards. b LC-MS/MS profiles of HS and CS disaccharides derived from the CM of H1299/SRGN and H460/sh-CTRL cells.
DOI: 10.6084/m9.figshare.12865499
title: Neonate Congenital Anomaly Dataset

description: Dataset of neonates diagnosed with congenital anomalies admitted to a NICU in northern Ghana. Maternal and neonatal data collected for each subject. All identifiable characteristics removed.
DOI: 10.6084/m9.figshare.11497470
title: MOESM3 of Prepartum dietary energy intake alters adipose tissue transcriptome profiles during the periparturient period in Holstein dairy cows

description: Additional file 3. Complete metabolic and non-metabolic pathways comparison generated by Ingenuity Pathway Analysis from transcript profiling analysis in bovine subcutaneous adipose tissue from end of pregnancy (− 14 d) through early lactation (1 and 14 d) in dairy cow fed a control diet prepartum (CTR) or relatively high energy diet prepartum (OVR).
DOI: 10.6084/m9.figshare.11497470.v1
title: MOESM3 of Prepartum dietary energy intake alters adipose tissue transcriptome profiles during the periparturient period in Holstein dairy cows

description: Additional file 3. Complete metabolic and non-metabolic pathways comparison generated by Ingenuity Pathway Analysis from transcript profiling analysis in bovine subcutaneous adipose tissue from end of pregnancy (− 14 d) through early lactation (1 and 14 d) in dairy cow fed a control diet prepartum (CTR) or relatively high energy diet prepartum (OVR).
DOI: 10.6084/m9.figshare.11497464
title: MOESM2 of Prepartum dietary energy intake alters adipose tissue transcriptome profiles during the periparturient period in Holstein dairy cows

description: Additional file 2. Complete result datasets generated by the DIA analysis from transcript profiling analysis in bovine subcutaneous adipose tissue from end of pregnancy (− 14 d) through early lactation (1 and 14 d) in dairy cow fed a control diet prepartum (CTR) or relatively high energy diet prepartum (OVR). The KEGG pathways are sorted by category and subcategory. Blue bars represent the Impact, while red and green bars depict the Direction of the Impact (red = upregulation, green = downregulation)