cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7807391.v1
title: MOESM2 of Tarsier Goggles: a virtual reality tool for experiencing the optics of a dark-adapted primate visual system

description: Additional file 2. Data containing user responses to questions listed in TableÂ 1. Responses that neglected to answer the question at hand were omitted from the data.
DOI: 10.6084/m9.figshare.7807364
title: Additional file 10: of Transcriptomic analysis of different tissue layers in antler growth Center in Sika Deer (Cervus nippon)

description: Table S6. Primers of the nine hub genes were used for qRT-PCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7807367
title: Additional file 1: of Transcriptomic analysis of different tissue layers in antler growth Center in Sika Deer (Cervus nippon)

description: Table S1. Summary of sequencing data of 15 samples across the five tissue layers. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7807364.v1
title: Additional file 10: of Transcriptomic analysis of different tissue layers in antler growth Center in Sika Deer (Cervus nippon)

description: Table S6. Primers of the nine hub genes were used for qRT-PCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7807367.v1
title: Additional file 1: of Transcriptomic analysis of different tissue layers in antler growth Center in Sika Deer (Cervus nippon)

description: Table S1. Summary of sequencing data of 15 samples across the five tissue layers. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7807346
title: Additional file 1: of Using decision fusion methods to improve outbreak detection in disease surveillance

description: Table S1. An example of 25 years of dataset (training dataset the first 5 years + evaluation dataset the next 20 years) used in this study to evaluate outbreak detection algorithm and decision fusion methods (Baseline = 3 cases by days in average, Total number of outbreak cases injected =50 cases). The baseline (Column A) level of disease surveillance corresponding to an average of 3 cases declared by days in the system and the complete outbreak signal corresponding to a total of 50 cases according a shape of Norovirus outbreak injected (Column B) several time in the baseline. Column C represents the first day of the outbreak (1 = Start of the outbreak) and Column D all days considered as epidemic (=1). (XLSX 195 kb)
DOI: 10.6084/m9.figshare.7807346.v1
title: Additional file 1: of Using decision fusion methods to improve outbreak detection in disease surveillance

description: Table S1. An example of 25 years of dataset (training dataset the first 5 years + evaluation dataset the next 20 years) used in this study to evaluate outbreak detection algorithm and decision fusion methods (Baseline = 3 cases by days in average, Total number of outbreak cases injected =50 cases). The baseline (Column A) level of disease surveillance corresponding to an average of 3 cases declared by days in the system and the complete outbreak signal corresponding to a total of 50 cases according a shape of Norovirus outbreak injected (Column B) several time in the baseline. Column C represents the first day of the outbreak (1 = Start of the outbreak) and Column D all days considered as epidemic (=1). (XLSX 195 kb)
DOI: 10.34740/kaggle/dsv/1446028
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.7807253
title: The biodistribution and immuno-responses of differently shaped non-modified gold particles in zebrafish embryos

description: Important questions raised in (nano)ecotoxicology are whether biodistribution of nanoparticles (NPs) is affected by particle shape and to what extent local adverse responses are subsequently initiated. For nanomedicine, these same questions become important when the labeled NPs lose the labeling. In this study, we investigated the biodistribution patterns of gold nanoparticles (AuNPs) as well as immune-related local and systemic sublethal markers of exposure and behavioral assessment. Hatched zebrafish embryos were exposed to four differently shaped non-coated AuNPs with comparable sizes: nanospheres, nanorods, nano-urchins, and nano-bipyramids. Shape-dependent trafficking of the particles resulted in a different distribution of the particles over the target organs. The differences across the distribution patterns indicate that the particles behave slightly different, although they eventually reach the same target organs – yet in different ratios. Mainly local induction of the immune system was observed, whereas systemic immune responses were not clearly visible. Macrophages were found to take AuNPs from the body fluid, be transferred into the veins and transported to digestive organs for clearance. No significant behavioral toxicological responses in zebrafish embryos were observed after exposure. The trafficking of the particles in the macrophages indicates that the particles are removed via the mononuclear phagocytic system. The different ratios in which the particles are distributed over the target organs indicate that the shape influences their behavior and eventually possibly the toxicity of the particles. The observed shape-dependent biodistribution patterns might be beneficial for shape-specific targeting in nanomedicine and stress the importance of incorporating shape-features in nanosafety assessment.
DOI: 10.6084/m9.figshare.7807247
title: Xylem embolism, mortality and nocturnal water loss for 8 species.csv

description: <b>Abstract</b> Drought-induced tree mortality is expected to increase in future climates with the potential for significant consequences to global carbon, water and energy cycles. Xylem embolism can accumulate to lethal levels during drought, but species that can refill embolized xylem and recover hydraulic function may be able to avoid mortality. Yet the potential controls of embolism recovery, including cross-biome patterns and plant traits such as non-structural carbohydrates (NSCs), hydraulic traits, and nocturnal stomatal conductance, are unknown. We exposed eight plant species, originating from mesic (tropical and temperate) and semi-arid environments, to drought under ambient and elevated CO<sub>2</sub> levels and assessed recovery from embolism following re-watering. We found a positive association between xylem recovery and NSCs, and surprisingly, a positive relationship between xylem recovery and nocturnal stomatal conductance. Arid-zone species exhibited greater embolism recovery than mesic zone species. Our results indicate that nighttime stomatal conductance, often assumed to be a wasteful use of water, may in fact be a key part of plant drought responses, and contribute to drought survival. Findings suggested distinct biome-specific responses that partially depended on species climate-of-origin precipitation or aridity index, that allowed some species to recover from xylem embolism. These findings provide improved understanding required to predict the response of diverse plant communities to drought. Our results provide a framework for predicting future vegetation shifts in response to climate change.<b></b><br>Data uploaded include plant hydraulic data and plant characteristics, including time to mortality, vessel length versus branch length and time to death for eight species across different biomes.
DOI: 10.6084/m9.figshare.7807253.v1
title: The biodistribution and immuno-responses of differently shaped non-modified gold particles in zebrafish embryos

description: Important questions raised in (nano)ecotoxicology are whether biodistribution of nanoparticles (NPs) is affected by particle shape and to what extent local adverse responses are subsequently initiated. For nanomedicine, these same questions become important when the labeled NPs lose the labeling. In this study, we investigated the biodistribution patterns of gold nanoparticles (AuNPs) as well as immune-related local and systemic sublethal markers of exposure and behavioral assessment. Hatched zebrafish embryos were exposed to four differently shaped non-coated AuNPs with comparable sizes: nanospheres, nanorods, nano-urchins, and nano-bipyramids. Shape-dependent trafficking of the particles resulted in a different distribution of the particles over the target organs. The differences across the distribution patterns indicate that the particles behave slightly different, although they eventually reach the same target organs – yet in different ratios. Mainly local induction of the immune system was observed, whereas systemic immune responses were not clearly visible. Macrophages were found to take AuNPs from the body fluid, be transferred into the veins and transported to digestive organs for clearance. No significant behavioral toxicological responses in zebrafish embryos were observed after exposure. The trafficking of the particles in the macrophages indicates that the particles are removed via the mononuclear phagocytic system. The different ratios in which the particles are distributed over the target organs indicate that the shape influences their behavior and eventually possibly the toxicity of the particles. The observed shape-dependent biodistribution patterns might be beneficial for shape-specific targeting in nanomedicine and stress the importance of incorporating shape-features in nanosafety assessment.
DOI: 10.6084/m9.figshare.7807232
title: PLSDB 2018_12_05

description: PLSDB files from 2018.12.05
DOI: 10.6084/m9.figshare.7807232.v1
title: PLSDB 2018_12_05

description: PLSDB files from 2018.12.05
DOI: 10.6084/m9.figshare.7807247.v1
title: Canopy death estimates.csv

description: Water loss and embolism - data showing time to mortality for eight species.
DOI: 10.6084/m9.figshare.7807247.v3
title: Xylem embolism, mortality and nocturnal water loss for 8 species.csv

description: <b>Abstract</b> Drought-induced tree mortality is expected to increase in future climates with the potential for significant consequences to global carbon, water and energy cycles. Xylem embolism can accumulate to lethal levels during drought, but species that can refill embolized xylem and recover hydraulic function may be able to avoid mortality. Yet the potential controls of embolism recovery, including cross-biome patterns and plant traits such as non-structural carbohydrates (NSCs), hydraulic traits, and nocturnal stomatal conductance, are unknown. We exposed eight plant species, originating from mesic (tropical and temperate) and semi-arid environments, to drought under ambient and elevated CO<sub>2</sub> levels and assessed recovery from embolism following re-watering. We found a positive association between xylem recovery and NSCs, and surprisingly, a positive relationship between xylem recovery and nocturnal stomatal conductance. Arid-zone species exhibited greater embolism recovery than mesic zone species. Our results indicate that nighttime stomatal conductance, often assumed to be a wasteful use of water, may in fact be a key part of plant drought responses, and contribute to drought survival. Findings suggested distinct biome-specific responses that partially depended on species climate-of-origin precipitation or aridity index, that allowed some species to recover from xylem embolism. These findings provide improved understanding required to predict the response of diverse plant communities to drought. Our results provide a framework for predicting future vegetation shifts in response to climate change.<b></b><br>Data uploaded include plant hydraulic data and plant characteristics, including time to mortality, vessel length versus branch length and time to death for eight species across different biomes.
DOI: 10.6084/m9.figshare.7807217
title: Tamchinsky Deer Stone

description: Datasets contents Original Photos of Tamchinsky Deer Stone, SfM 3D model, ortophotos and black-white redrawings of deer stone petroglyphs. For redrawings there is all intermediate accessory materials - original DEM models, DEM models, processed with various topographic filters, etc.<br>3D model on the web: https://3d.nsu.ru/ru/object/view/252<br>
DOI: 10.6084/m9.figshare.7807247.v2
title: Xylem embolism, mortality and nocturnal water loss for 8 species.csv

description: <b>Abstract</b> Drought-induced tree mortality is expected to increase in future climates with the potential for significant consequences to global carbon, water and energy cycles. Xylem embolism can accumulate to lethal levels during drought, but species that can refill embolized xylem and recover hydraulic function may be able to avoid mortality. Yet the potential controls of embolism recovery, including cross-biome patterns and plant traits such as non-structural carbohydrates (NSCs), hydraulic traits, and nocturnal stomatal conductance, are unknown. We exposed eight plant species, originating from mesic (tropical and temperate) and semi-arid environments, to drought under ambient and elevated CO<sub>2</sub> levels and assessed recovery from embolism following re-watering. We found a positive association between xylem recovery and NSCs, and surprisingly, a positive relationship between xylem recovery and nocturnal stomatal conductance. Arid-zone species exhibited greater embolism recovery than mesic zone species. Our results indicate that nighttime stomatal conductance, often assumed to be a wasteful use of water, may in fact be a key part of plant drought responses, and contribute to drought survival. Findings suggested distinct biome-specific responses that partially depended on species climate-of-origin precipitation or aridity index, that allowed some species to recover from xylem embolism. These findings provide improved understanding required to predict the response of diverse plant communities to drought. Our results provide a framework for predicting future vegetation shifts in response to climate change.<b></b><br>Data uploaded include plant hydraulic data and plant characteristics, including time to mortality, vessel length versus branch length and time to death for eight species across different biomes.
DOI: 10.6084/m9.figshare.7806848
title: Geochip functional genes

description: GeoChip 4.0 was used to target soil microbial functional genes
DOI: 10.6084/m9.figshare.7806848.v1
title: Geochip functional genes

description: GeoChip 4.0 was used to target soil microbial functional genes
DOI: 10.6084/m9.figshare.7806827.v1
title: Supporting data&code-How Do Global Trade Cascade to Large Climate Forcing over the Tibetan Plateau Glaciers

description: We quantify the contributions from different countries/sectors as direct emitters and final consumers in global trade to the BC pollution over the HTP glaciers using an adjoint inverse model combined with multi-region input-output analysis.
DOI: 10.6084/m9.figshare.7806818
title: Immunogenicity and safety of the combined vaccine for measles, mumps, and rubella isolated or combined with the varicella component administered at 3-month intervals: randomised study

description: BACKGROUND Field testing required to license the combined measles, mumps, and rubella (MMR) vaccine must take into account the current recommendation of the vaccine in Brazil: first dose at 12 months and second dose at 15 months of age in combination with a varicella vaccine. OBJECTIVES This study aimed to evaluate the clinical consistency, immunogenicity, and reactogenicity of three batches of MMR vaccine prepared with active pharmaceutical ingredients (API) from Bio-Manguinhos, Fiocruz (MMR-Bio), and compare it to a vaccine (MMR produced by GlaxoSmithKline) with different API. METHODS This was a phase III, randomised, double-blind, non-inferiority study of the MMR-Bio administered in infants immunised at health care units in Pará, Brazil, from February 2015 to January 2016. Antibody levels were titrated by immunoenzymatic assays. Adverse events were recorded in diaries. FINDINGS Seropositivity levels after MMR-Bio were 97.6% for measles, 84.7% for mumps, and 98.0% for rubella. After the MMRV vaccine, seroconversion rates and GMT increased substantially for mumps. In contrast, approximately 35% of the children had no detectable antibodies to varicella. Systemic adverse events were more frequent than local events. CONCLUSION The demonstration of batch consistency and non-inferiority of the Bio-MMR vaccine completed the technology transfer. This is a significant technological achievement with implications for immunisation programs.
DOI: 10.6084/m9.figshare.7806821
title: Aluminum stress tolerance in potato genotypes grown with silicon

description: ABSTRACT Potato cultivation is widespread around the world, being exposed to several abiotic stresses, including soils with high aluminum (Al) availability. Silicon (Si) is recognized for alleviating the stress caused by Al in various plant species. Thus, the aim of this study was to investigate the potential of Si to mitigate the oxidative stress caused by Al in potato genotypes, exhibiting differential sensitivity toward this element. Plants of the Al-sensitive genotype (SMIJ319-7) and Al-tolerant genotype (SMIF212-3) were grown for two weeks in a hydroponic system with the nutrient solution containing combinations of Al (0 and 1.85 mM) and Si (0, 0.5 and 1.0 mM). At the end of the experiment, photosynthetic parameters, pigment content, root and shoot growth, superoxide dismutase and guaiacol peroxidase activity and lipid peroxidation were evaluated. In both potato genotypes Al inhibited root and shoot growth and decreased all photosynthetic parameters and superoxide dismutase activity. Silicon was able to partially alleviate the damage caused by Al in parameters of root growth in the Al-tolerant genotype while increasing the activity of antioxidant enzymes and mitigating the Al-induced damage to membrane lipids in roots and shoot in both genotypes. The Al-tolerant genotype showed greater water use efficiency and transpiration rate in control conditions as compared to the Al-sensitive genotype. These data indicate that Si application can improve the defense ability of the tested potato genotypes against Al toxicity and that the Al-tolerant genotype is more responsive to Si.
DOI: 10.6084/m9.figshare.7806818.v1
title: Immunogenicity and safety of the combined vaccine for measles, mumps, and rubella isolated or combined with the varicella component administered at 3-month intervals: randomised study

description: BACKGROUND Field testing required to license the combined measles, mumps, and rubella (MMR) vaccine must take into account the current recommendation of the vaccine in Brazil: first dose at 12 months and second dose at 15 months of age in combination with a varicella vaccine. OBJECTIVES This study aimed to evaluate the clinical consistency, immunogenicity, and reactogenicity of three batches of MMR vaccine prepared with active pharmaceutical ingredients (API) from Bio-Manguinhos, Fiocruz (MMR-Bio), and compare it to a vaccine (MMR produced by GlaxoSmithKline) with different API. METHODS This was a phase III, randomised, double-blind, non-inferiority study of the MMR-Bio administered in infants immunised at health care units in Pará, Brazil, from February 2015 to January 2016. Antibody levels were titrated by immunoenzymatic assays. Adverse events were recorded in diaries. FINDINGS Seropositivity levels after MMR-Bio were 97.6% for measles, 84.7% for mumps, and 98.0% for rubella. After the MMRV vaccine, seroconversion rates and GMT increased substantially for mumps. In contrast, approximately 35% of the children had no detectable antibodies to varicella. Systemic adverse events were more frequent than local events. CONCLUSION The demonstration of batch consistency and non-inferiority of the Bio-MMR vaccine completed the technology transfer. This is a significant technological achievement with implications for immunisation programs.
DOI: 10.6084/m9.figshare.7806821.v1
title: Aluminum stress tolerance in potato genotypes grown with silicon

description: ABSTRACT Potato cultivation is widespread around the world, being exposed to several abiotic stresses, including soils with high aluminum (Al) availability. Silicon (Si) is recognized for alleviating the stress caused by Al in various plant species. Thus, the aim of this study was to investigate the potential of Si to mitigate the oxidative stress caused by Al in potato genotypes, exhibiting differential sensitivity toward this element. Plants of the Al-sensitive genotype (SMIJ319-7) and Al-tolerant genotype (SMIF212-3) were grown for two weeks in a hydroponic system with the nutrient solution containing combinations of Al (0 and 1.85 mM) and Si (0, 0.5 and 1.0 mM). At the end of the experiment, photosynthetic parameters, pigment content, root and shoot growth, superoxide dismutase and guaiacol peroxidase activity and lipid peroxidation were evaluated. In both potato genotypes Al inhibited root and shoot growth and decreased all photosynthetic parameters and superoxide dismutase activity. Silicon was able to partially alleviate the damage caused by Al in parameters of root growth in the Al-tolerant genotype while increasing the activity of antioxidant enzymes and mitigating the Al-induced damage to membrane lipids in roots and shoot in both genotypes. The Al-tolerant genotype showed greater water use efficiency and transpiration rate in control conditions as compared to the Al-sensitive genotype. These data indicate that Si application can improve the defense ability of the tested potato genotypes against Al toxicity and that the Al-tolerant genotype is more responsive to Si.
DOI: 10.6084/m9.figshare.7806803
title: Physiological quality of pelleted Cubiu (Solanum sessiliflorum Dunal) seeds

description: Abstract The objective of this study was to evaluate the effect of different coating materials on the physiological quality of cubiu seeds. This was evaluated with three agglomerate materials (manioc starch, inert talc and dolomitic limestone) and two binder polymers (polyvinyl acetate and gum arabic) with 30% concentration, and artificial dye finishing. The experimental design was completely randomized, in factorial scheme 3 (agglomerates) x 2 (binders), and additional treatment (bare seeds/control), containing four replicates and experimental units of fifty seeds/pellets. The seeds were evaluated for: yield; seed/pellet diameter; thousand seed weight; number of seeds per pellets; germination; germination speed index; mean germination time, seedling length; fresh and dry mass of the seedling and emergence. In general, pelletizing increased the weight and diameter of the propagation unit. The physical barrier applied to the seeds by pelletizing did not influence the germination, but delayed the germination rate concerning to bare seeds, and this effect was not observed in emergence seedling. The coating with dolomitic limestone and polyvinyl acetate presented the best results of germination and vigor.