cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15291701
title: Underwater images collected by an Autonomous Surface Vehicle in St-Leu, Réunion - 2025-04-25

description: This dataset was collected by an Autonomous Surface Vehicle in St-Leu, Réunion - 2025-04-25. 

            Underwater or aerial images collected by scientists or citizens can have a wide variety of use for science, management, or conservation.
            These images can be annotated and shared to train IA models which can in turn predict the objects on the images.
            We provide a set of tools (hardware and software) to collect marine data, predict species or habitat, and provide maps.

            This dataset is part of larger collection referencing numerous underwater and aerial images Seatizen Altas. 
            Methods, tools and scientific objectives are also described in a dedicated data paper.

            

            
 Generic folder structure 
            
            YYYYMMDD_COUNTRYCODE-optionalplace_device_session-number 
            ├── DCIM :  folder to store videos and photos depending on the media collected. 
            ├── GPS :  folder to store any positioning related file. If any kind of correction is possible on files (e.g. Post-Processed Kinematic thanks to rinex data) then the distinction between device data and base data is made. If, on the other hand, only device position data are present and the files cannot be corrected by post-processing techniques (e.g. gpx files), then the distinction between base and device is not made and the files are placed directly at the root of the GPS folder. 
            │   ├── BASE :  files coming from rtk station or any static positioning instrument. 
            │   └── DEVICE : files coming from the device. 
            ├── METADATA : folder with general information files about the session. 
            ├── PROCESSED_DATA : contain all the folders needed to store the results of the data processing of the current session. 
            │   ├── BATHY :  output folder for bathymetry raw data extracted from mission logs. 
            │   ├── FRAMES :  output folder for georeferenced frames extracted from DCIM videos. 
            │   ├── IA :  destination folder for image recognition predictions. 
            │   └── PHOTOGRAMMETRY :  destination folder for reconstructed models in photogrammetry. 
            └── SENSORS : folder to store files coming from other sources (bathymetry data from the echosounder, log file from the autopilot,  mission plan etc.).       
            

            
 Software 
            All the raw data was processed using our worflow. All predictions were generated by our inference pipeline. You can find all the necessary scripts to download this data in this repository. Enjoy your data with SeatizenDOI!
description: The Plancha project is co-financed by the Prefecture of Reunion as part of a 2019-2022 convergence and transformation contract, measure 3.3.1.1
DOI: 10.5281/zenodo.15291250
title: Underwater images collected by an Autonomous Surface Vehicle in Trou-Deau, Réunion - 2025-04-22

description: This dataset was collected by an Autonomous Surface Vehicle in Trou-Deau, Réunion - 2025-04-22. 

            Underwater or aerial images collected by scientists or citizens can have a wide variety of use for science, management, or conservation.
            These images can be annotated and shared to train IA models which can in turn predict the objects on the images.
            We provide a set of tools (hardware and software) to collect marine data, predict species or habitat, and provide maps.

            This dataset is part of larger collection referencing numerous underwater and aerial images Seatizen Altas. 
            Methods, tools and scientific objectives are also described in a dedicated data paper.

            

            
 Generic folder structure 
            
            YYYYMMDD_COUNTRYCODE-optionalplace_device_session-number 
            ├── DCIM :  folder to store videos and photos depending on the media collected. 
            ├── GPS :  folder to store any positioning related file. If any kind of correction is possible on files (e.g. Post-Processed Kinematic thanks to rinex data) then the distinction between device data and base data is made. If, on the other hand, only device position data are present and the files cannot be corrected by post-processing techniques (e.g. gpx files), then the distinction between base and device is not made and the files are placed directly at the root of the GPS folder. 
            │   ├── BASE :  files coming from rtk station or any static positioning instrument. 
            │   └── DEVICE : files coming from the device. 
            ├── METADATA : folder with general information files about the session. 
            ├── PROCESSED_DATA : contain all the folders needed to store the results of the data processing of the current session. 
            │   ├── BATHY :  output folder for bathymetry raw data extracted from mission logs. 
            │   ├── FRAMES :  output folder for georeferenced frames extracted from DCIM videos. 
            │   ├── IA :  destination folder for image recognition predictions. 
            │   └── PHOTOGRAMMETRY :  destination folder for reconstructed models in photogrammetry. 
            └── SENSORS : folder to store files coming from other sources (bathymetry data from the echosounder, log file from the autopilot,  mission plan etc.).       
            

            
 Software 
            All the raw data was processed using our worflow. All predictions were generated by our inference pipeline. You can find all the necessary scripts to download this data in this repository. Enjoy your data with SeatizenDOI!
description: The Plancha project is co-financed by the Prefecture of Reunion as part of a 2019-2022 convergence and transformation contract, measure 3.3.1.1
DOI: 10.15468/dl.mzwycy
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017028-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78fejd
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "Geometry POLYGON((-97.22411 19.24464,-96.89648 19.24464,-96.89648 19.53117,-97.22411 19.53117,-97.22411 19.24464))",
 "TaxonKey is Asparagaceae"
 ]
}

 The dataset includes 154 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017029-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwgysa
title: Occurrence Download

description: A dataset containing 5293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Branta bernicla (Linnaeus, 1758))",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 5293 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017032-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9a2ttx
title: Occurrence Download

description: A dataset containing 1075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Branta bernicla (Linnaeus, 1758))",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 1075 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017031-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfxby7
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017030-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29219864
title: Row data

description: Excel with row data avoiding to use sensitive data as the full name
DOI: 10.6084/m9.figshare.29219864.v1
title: Row data

description: Excel with row data avoiding to use sensitive data as the full name
DOI: 10.5281/zenodo.15581093
title: FIShBOT Archive 2025-06-03

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.15581094
title: FIShBOT Archive 2025-06-03

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.15520276
title: Exploration of the electron density and bare nuclear potential of all isomers of W3-W8 from wdbase (within 5kcal/mol energy range from the putative minima)
DOI: 10.5281/zenodo.15520277
title: Exploration of the electron density and bare nuclear potential of all isomers of W3-W8 from wdbase (within 5kcal/mol energy range from the putative minima)
DOI: 10.15468/dl.f6xkzu
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Branta bernicla (Linnaeus, 1758))",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017036-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xe8pf2
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "Geometry POLYGON((-97.25685 19.26483,-96.81213 19.26483,-96.81213 19.6351,-97.25685 19.6351,-97.25685 19.26483))",
 "TaxonKey is Begoniaceae"
 ]
}

 The dataset includes 361 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017034-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bu44s
title: Occurrence Download

description: A dataset containing 1027 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catha edulis Forssk."
 ]
}

 The dataset includes 1027 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017035-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8rzde
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Branta bernicla (Linnaeus, 1758))",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 29 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017037-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29192819
title: <b>Multiple stressors shape </b><b>soil </b><b>microbial functional diversity worldwide</b>

description: We collected soils from 200 sites on a global scale to measure stressors. Sampling sitesincluded all dominant terrestrial ecosystems, i.e., temperate forests, seasonal tropical forests, temperate grasslands, subtropical woodlands, polar tundra and shrublands, providing a good representation of the most common environmental conditions found in terrestrial environments on all seven continents. We considered ten common environmental factors that can result in stress when passing high levels. These factors were aridity (inverse of aridity index), temperature (maximum temperature), seasonality (precipitation and temperature seasonality and diurnal temperature range), extreme events(extreme dry events, extreme wet events, heatwave days), fire, salinity, distance from neutral pH(acidification), levels of heavy metals (soil As, Cd, Cr, Cu, Ni, Pb and Zn), human influence (for example, human-influence index and fertilization)and UV radiation.To evaluate the reliability and validity of the findings derived from the global field survey, we employed an additional dataset comprising 1409 sites distributed globally. This dataset encompassed a diverse range of ecosystem types, including alpine soil, bare land, desert, forest, grassland, shrubland, tundra and volcanic soil.
DOI: 10.6084/m9.figshare.29192819.v1
title: <b>Multiple stressors shape </b><b>soil </b><b>microbial functional diversity worldwide</b>

description: We collected soils from 200 sites on a global scale to measure stressors. Sampling sitesincluded all dominant terrestrial ecosystems, i.e., temperate forests, seasonal tropical forests, temperate grasslands, subtropical woodlands, polar tundra and shrublands, providing a good representation of the most common environmental conditions found in terrestrial environments on all seven continents. We considered ten common environmental factors that can result in stress when passing high levels. These factors were aridity (inverse of aridity index), temperature (maximum temperature), seasonality (precipitation and temperature seasonality and diurnal temperature range), extreme events(extreme dry events, extreme wet events, heatwave days), fire, salinity, distance from neutral pH(acidification), levels of heavy metals (soil As, Cd, Cr, Cu, Ni, Pb and Zn), human influence (for example, human-influence index and fertilization)and UV radiation.To evaluate the reliability and validity of the findings derived from the global field survey, we employed an additional dataset comprising 1409 sites distributed globally. This dataset encompassed a diverse range of ecosystem types, including alpine soil, bare land, desert, forest, grassland, shrubland, tundra and volcanic soil.
DOI: 10.15468/dl.jbaj45
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017039-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyhfsq
title: Occurrence Download

description: A dataset containing 6353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rousettus aegyptiacus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 6353 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003968-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcqqec
title: Occurrence Download

description: A dataset containing 4441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syconycteris australis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 4441 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003972-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a965f4
title: Occurrence Download

description: A dataset containing 2906 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tagetes tenuifolia"
 ]
}

 The dataset includes 2906 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003975-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywswf6
title: Occurrence Download

description: A dataset containing 1792 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhinolophus affinis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 1792 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003976-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5umjs
title: Occurrence Download

description: A dataset containing 6682091 records in GBIF matching the query:
SELECT 
 "gbifid", "taxonkey", "phylum", "class", "order", "eventdate", "datasetkey", "countrycode", "stateprovince", "decimallongitude", "decimallatitude" 
FROM occurrence 
WHERE 
 ("hasgeospatialissues" = 'false') AND 
 ("hascoordinate" = 'true') AND 
 ("occurrencestatus" = 'PRESENT') AND 
 NOT("basisofrecord" IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')) AND 
 ("decimallatitude" &gt;= -90) AND 
 ("decimallatitude" &lt; 31) AND 
 ("decimallongitude" &gt;= -88) AND 
 ("decimallongitude" &lt; -87) AND 
 ("year" &lt;= 2025)

 The dataset's 6682091 records were derived from 1165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003962-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py3kwn
title: Occurrence Download

description: A dataset containing 5009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "StateProvince is New York",
 "TaxonKey is Ceratina"
 ]
}

 The dataset includes 5009 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003978-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfauub
title: Occurrence Download

description: A dataset containing 540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Rhododendron parvifolium"
 ]
}

 The dataset includes 540 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003980-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.