cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dd7h4/1
title: LTBi diagnosis, treatment and follow-up of TB contacts

description: All the variables included in the analysis can be found in this database. Variable labels include their description
DOI: 10.5061/dryad.dv4mg/10
title: Alignment_Myriapora_truncata_COI

description: Arlequin-formatted file of alignment of COI sequences from Myriapora truncata used in this publication, with population information.
DOI: 10.5061/dryad.dv4mg/11
title: Alignment_Ophioderma_longicauda_COI

description: Arlequin-formatted file of alignment of COI sequences from Ophioderma longicauda used in this publication, with population information.
DOI: 10.5061/dryad.dv4mg/12
title: Alignment_Paracentrotus_lividus_COI

description: Arlequin-formatted file of alignment of COI sequences from Paracentrotus lividus used in this publication, with population information.
DOI: 10.5061/dryad.dv4mg/13
title: Alignment_Patella_caerulea_COI

description: Arlequin-formatted file of alignment of COI sequences from Patella caerulea used in this publication, with population information.
DOI: 10.5061/dryad.dv4mg/4
title: Plate_map_for_Illumina

description: Description of the amplicons included in our sequencing run, with information about the Plate (1, 2, or 3, corresponding to 1 of the three raw sequencing files), Population, marker, and other information.
DOI: 10.5061/dryad.dv4mg/8
title: Alignment_Echinocardium_cordatum_16S

description: Arlequin-formatted file of alignment of 16S sequences from Echinocardium cordatum used in this publication, with population information.
DOI: 10.5061/dryad.dv4mg/9
title: Alignment_Hemimysis_margalefi_COI

description: Arlequin-formatted file of alignment of COI sequences from Hemimysis margalefi used in this publication, with population information.
DOI: 10.5061/dryad.ft0qm/3
title: Supplementary_Data_for_Inner_Ear_of_Squamates

description: Supplementary material S1 - Table S1 Specimen numbers, taxonomic authorities, and institutional abbreviations.
Supplementary material S2 Landmark coordinates of all taxa included in the study (.nts format).
Supplementary material S3 - Figures S1-S4 Figure S1, two phylogenies inclusive of fossil taxa that were used in this study; Figure S2, accuracy test of landmarking procedure; Figure S3, distribution of variance of the principal components; Figure S4, distribution of variance for the first 10 phylogenetic principal components derived from both phylogenies adopted (i.e. with Dinilysia as a stem alethinophidian and as a stem ophidian).  
Supplementary material S4 - Table S2 Ecology of all the taxa included in the study and literature sources.
Supplementary material S5 Scripts used to run the analyses in R.
Supplementary material S6 - Table S3 First 10 ordinary principal components for all taxa included in the study.
Supplementary material S7 Three-dimensional ordinary PCA plot of PC1 vs PC2 vs PC3. Colour coding is the same as in Figure 2.
Supplementary material S8 – Table S4 First 10 phylogenetic principal components (PPCs) for all taxa included in the study and for both phylogenentic PCA analyses (i.e. with Dinilysia as a stem alethinophidian and as a stem ophidian).  
Supplementary material S9 Three-dimensional phylogenetic PCA plot of PC1 vs PC2 vs PC3 (based on phylogeny where Dinilysia is a stem alethinophidian). Colour coding is the same as in Figure 2.
DOI: 10.5061/dryad.gm073.2/3.2
title: genotypes_lubbock
DOI: 10.5061/dryad.n6k72/1
title: Detailed information of the lifestyles, habitats and fossil occurrences of each thelodont species.
DOI: 10.5061/dryad.n6k72/2
title: Supporting information references.
DOI: 10.5061/dryad.ns3hq/1
title: R code Fig. 1

description: R code generating Fig. 1 in the paper
DOI: 10.5061/dryad.p03j0/1
title: TemporalBillLength_DryadData

description: Text file containing bill length and tarsus length of birds measured between 1982 and 2007
DOI: 10.5061/dryad.p03j0/2
title: Plink files of all typed individuals

description: .bed file of 3015 individuals typed at 485,122 SNPs.
DOI: 10.5061/dryad.p03j0/3
title: Plink files of all typed individuals

description: .bim file of 3015 individuals typed at 485,122 SNPs
DOI: 10.5061/dryad.s8t8p/2
title: Video with samples of evolved behaviours
DOI: 10.5061/dryad.s8t8p/3
title: raw_logs.tar
DOI: 10.5061/dryad.sr595/16
title: 3D-PLOT-DATA_Fig2_Excel

description: An excel file containing just the data-sheets provided under the same name for those with no access to jnb files. (Data for Fig. 2 3D plots.)
DOI: 10.5061/dryad.sr595/8
title: 3D-PLOT-DATA-Fig2

description: Sigma-plot file containing data for Fig. 2 3D plots.  An excel file containing just the data-sheets is also provided under the same name for those with no access to jnb files.
DOI: 10.5061/dryad.vs76v/1
title: Climate Surface Layers

description: Climate surface layers in raster ascii format used as predictor variables in modeling exercise. Current, Mid Holocene, LGM and LIG refer to contemporary climate (1950-2000), Mid Holocene (~6000 years ago), Last Glacial Maximum (~22000 years ago) and Last Inter Glacial (~120000 years ago). All surfaces were generated by Jeremy Vanderwal.
DOI: 10.5061/dryad.02sk7/1
title: Ground-dove phylogeny

description: Tree file of small New World ground-doves used in cophylogenetic analysis with their parasitic body lice.
DOI: 10.5061/dryad.02sk7/2
title: Physconelloides ASTRAL phylogeny

description: Tree file of ground-dove body louse phylogeny estimated with ASTRAL.
DOI: 10.5061/dryad.02sk7/3
title: Physconelloides ASTRID phylogeny

description: Tree file of ground-dove body louse phylogeny estimated with ASTRID.
DOI: 10.5061/dryad.19526/1
title: morbey_LPBO

description: morbey_LPBO.csv
This file has first capture dates for birds processed through the migration monitoring program at Long Point Bird Observatory. See readme.txt for further details.
DOI: 10.5061/dryad.19526/2
title: morbey_radio

description: This file contains information on birds in the radio telemetry study. Birds were released at Old Cut Research Station (42.584 N, 80.397 W). See readme.txt for details.
DOI: 10.5061/dryad.19526/3
title: morbey_tailwind

description: This file has extracted weather data from the RNCEP dataset. See readme.txt for details.
DOI: 10.5061/dryad.19526/4
title: morbey_blood

description: This file has data for plasma metabolite study. Birds were captured at Old Cut Research Station (42.584 N, 80.397 W). See readme.txt for details.
DOI: 10.5061/dryad.1v8v6/1
title: pulmonary edema
DOI: 10.5061/dryad.2rh22/3
title: Quantitative Fishings

description: Quantitative fishing effort for all streams used in the study to calculate average density of fish in both groundwater and surface water fed streams. The file shows raw data for counts in each run, number of runs fished, and length and average width of the stream in the sampled section. Densities are calculated using a removal sampling formula to calculate "true" number of fish in the section, then dividing by the area.
DOI: 10.5061/dryad.2rh22/4
title: Stomach contents

description: Raw stomach content count data. For every fish, with its given unique identifier number, the number of prey items of each taxonomic group found in the stomach is given. These are total counts of all stomach contents, not estimates based on a subsample.
DOI: 10.5061/dryad.2rh22/5
title: Raw Isotope Data

description: Raw isotopic values for each fish, along with length, weight and unique identifier for these fish. In addition, baseline values for each stream are also contained in the file.
DOI: 10.5061/dryad.2rh22/6
title: Habitat Data

description: Flow regime and substrate type data, recorded in percent of each river. PCA of stability is based on these variables.
DOI: 10.5061/dryad.387jh/2
title: Supplemental raw data files

description: Field, greenhouse, in-vitro raw data
DOI: 10.5061/dryad.3k8v9/1
title: data_Genbank_june2017

description: Each file contains the metadata of genomes available in GenBank for a given taxonomic group up to June 2017 (https://www.ncbi.nlm.nih.gov/genome/browse/#). Four levels of assembly were considered: contigs, scaffolds, chromosomes, and complete genome (https://www.ncbi.nlm.nih.gov/assembly/help/#definition).
DOI: 10.5061/dryad.3q7k6/1
title: Data for experiments 1, 2 and 3.

description: Data collected on captive birds. Dataset 1 = Experiment 1: total amount of foods, ingredients, and nutrients consumed over 3 days. Mix 1 = Dog pellet (DP), Mix 2 = Dog pellet and Wombaroo (W), Mix 3 = Dog pellet + Wombaroo + Eggs & Biscuits (EB). P = protein, L = lipid, and C = carbohydrate. Dataset 2 = Experiment 2: total amount of artificial pellets consumed over 3 days. P = protein, L = lipid, and C = carbohydrate. Dataset 3 = Experiment 3: behavioural data for innovation test (innovation score = latency to solve - latency to first contact task) and exploration test (exploration score = PC1 scores from variables compiled in PCA).
DOI: 10.5061/dryad.460mc/1
title: Surface peat nutrient ratios
DOI: 10.5061/dryad.460mc/2
title: Litter nutrient ratios
DOI: 10.5061/dryad.460mc/3
title: Peat core nutrient ratios
DOI: 10.5061/dryad.460mc/4
title: Enzymatic activity
DOI: 10.5061/dryad.460mc/5
title: Litter decomposition
DOI: 10.5061/dryad.460mc/6
title: Litter translocation experiment
DOI: 10.5061/dryad.7fs45/1
title: Data
DOI: 10.5061/dryad.80cv0/1
title: Data_QuantifyingTeamCooperation_RSOS
DOI: 10.5061/dryad.8kb4m/1
title: qPCR data Subirats et al _ Mol Ecol

description: The data file provides the relative abundance of twelve antibiotic resistance genes (ARGs) detected in streambed biofilms (epilithic and epipsammic biofims) impacted by both treated and raw effluents.
DOI: 10.5061/dryad.bj3tt/1
title: Tjiurutue.etal.Oecologia.2017.Metadata.

description: These are data from a manipulative experiment asking how damage by gypsy moths on cranberry affected attachment by a parasitic plant, dodder, as well as induced chemical defenses (phytohormones, volatiles and phenolics) that could be mechanisms mediating these interactions. The attachment and chemistry were assessed in two separate, parallel experiments in the greenhouse in Amherst, MA, USA in 2011. There is one worksheet for each of these responses (the 3 chemicals plus dodder attachment) and a worksheet describing all the variables.
DOI: 10.5061/dryad.c6bf5/1
title: Script and data files

description: This zip archive contains four files: the main data, the herbivory data, the R script and the README file describing the content of the three other files.
DOI: 10.5061/dryad.dh078/1
title: Pteropod weight data, respirometry data, and experimental treatment data

description: The raw data, as well as the R scripts used to analyzed them. Refer to publication for clarification.
DOI: 10.5061/dryad.dk244/1
title: antdata

description: Dataset from the bioassay in which ants responded to the defensive fluids of the wood tiger moth
DOI: 10.5061/dryad.dk244/2
title: bluetitsdata

description: Dataset from the bioassay in which blue tits responded to the defensive fluids of the wood tiger moth
DOI: 10.5061/dryad.dv4mg/14
title: Alignment_Ophioderma_longicauda_1972

description: Arlequin-formatted file of alignment of the diploid nuclear locus 1972 from Ophioderma longicauda as used in this publication, with population information.
DOI: 10.5061/dryad.dv4mg/15
title: Alignment_Ophioderma_longicauda_55384

description: Arlequin-formatted file of alignment of the diploid nuclear locus 55384 from Ophioderma longicauda as used in this publication, with population information.
DOI: 10.5061/dryad.dv4mg/16
title: Alignment_Ophioderma_longicauda_79905

description: Arlequin-formatted file of alignment of the diploid nuclear locus 79905 from Ophioderma longicauda as used in this publication, with population information.
DOI: 10.5061/dryad.dv4mg/17
title: Alignment_Ophioderma_longicauda_147510

description: Arlequin-formatted file of alignment of the diploid nuclear locus 147510 from Ophioderma longicauda as used in this publication, with population information.
DOI: 10.5061/dryad.gj4rp/1
title: BSMV-BYDV_TiterData

description: Relative viral titer data from enzyme-linked immunosorbent assays over a 7 week period for Barley yellow dwarf virus-PAV and Barley stripe mosaic virus infecting Hordeum vulgare var. Conlon.
DOI: 10.5061/dryad.gj4rp/2
title: BSMV-BYDV_HorizontalTransmission

description: Horizontal transmission data for Barley yellow dwarf virus and Barley stripe mosaic virus in Hordeum vulgare var. Conlon. Barley yellow dwarf virus was transmitted by aphid vectors and Barley stripe mosaic virus was transmitted through contact by rubbing.
DOI: 10.5061/dryad.gj4rp/3
title: BSMV_VerticalTransmission

description: Vertical transmission data for Barley stripe mosaic virus.
DOI: 10.5061/dryad.gj4rp/4
title: BSMV-BYDV_BiomassData

description: Biomass data for Hordeum vulgare var. Conlon plants infected with Barley yellow dwarf virus-PAV and/ or Barley stripe mosaic virus.
DOI: 10.5061/dryad.gk90t/1
title: aln_ortho.tar

description: Alignment data of orthologs (protein) in FASTA format, with induced gaps represented by a '-'
DOI: 10.5061/dryad.gk90t/2
title: lookup_tables.tar

description: Mapping of project short gene IDs to NCBI/Genbank accessions, including relevant annotation data
DOI: 10.5061/dryad.h0p7f/1
title: Mother and offspring sexually antagonistic traits

description: Mother spine height, daughter spine height and son pregenital length, along with the number of sons or daughters per family and the sampling location for each mother
DOI: 10.5061/dryad.h0p7f/2
title: Mother and offspring body size

description: Mother and offspring centroid body size, along with offspring sex, the number of sons or daughters per family, and the sampling location for mothers
DOI: 10.5061/dryad.h0p7f/3
title: Ecological, population genetic, spatial and morphological data

description: This file contains ecological data, population-specific Fst, 2 variables summarizing spatial structure (dbMEM1 and dbMEM2) and morphological data for male and female water striders, for each of 16 sampling locations (acronyms as provided in the main text)
DOI: 10.5061/dryad.h6qp4/1
title: Njal.Rollinson.EggSize.Amphibians.Dryad

description: Data on life-history traits, environmental temperature with each species geographic range, and range size for 718 species of amphibians.
DOI: 10.5061/dryad.h6qp4/2
title: Dryad.US.Climate.Data

description: Mean maximum monthly temperatures (degrees C) for 7493  cities in the USA. Simulations in table A1 of the main text randomly selected 1000 of these cities as the basis for simulation. Data are provided in case readers wish to randomly select different cities for simulation.
DOI: 10.5061/dryad.h6qp4/3
title: Dryad.Monthly.Temperature.Simulation

description: R code to exactly replicate the simulation in Table A1 of the main text.
DOI: 10.5061/dryad.hv02n/1
title: Exp_Data
DOI: 10.5061/dryad.km835/1
title: Properties of paper formed in water
DOI: 10.5061/dryad.km835/2
title: Properties of paper formed in methanol
DOI: 10.5061/dryad.km835/3
title: Properties of paper formed in ethanol
DOI: 10.5061/dryad.km835/4
title: Properties of paper formed in propanol
DOI: 10.5061/dryad.km835/5
title: Properties of paper formed in butanol
DOI: 10.5061/dryad.km835/6
title: Optical properties of papers formed in different liquids
DOI: 10.5061/dryad.mb204/1
title: Measurement data of masu salmon (Oncorhynchus masou) and Dolly Varden charr (Salvelinus malma)

description: Measurement data of masu salmon (Oncorhynchus masou) and Dolly Varden charr (Salvelinus malma). The salmon and charr were collected at the 13 tributaries of the Shari River system in the eastern part of Hokkaido Island, Japan.
DOI: 10.5061/dryad.p03j0/10
title: COL4A5_genotype_feeder_visits

description: .csv file of data used to explore relationship between COL4A5 and visits to bird feeders
DOI: 10.5061/dryad.p03j0/11
title: 2015_2016_feeder_bills

description: .csv file of data used to explore relationship between bill length and feeder visits
DOI: 10.5061/dryad.p03j0/4
title: Plink files of all typed individuals

description: .fam file of 3015 individuals typed at 485,122 SNPs
DOI: 10.5061/dryad.p03j0/5
title: Plink file for genomic prediction between NL and UK populations

description: .bed file
DOI: 10.5061/dryad.p03j0/6
title: Plink file for genomic prediction between NL and UK populations

description: .bim file
DOI: 10.5061/dryad.p03j0/7
title: Plink file for genomic prediction between NL and UK populations

description: .fam file. Parents set as unknown and sex set as 2 (not used in analyses). Col 6 is bill length, Col 7 is UK birds bill length adjusted for repeated measurements and mean zero centred. This phenotype was also used in the GWAS. Col 8 is NL birds bill length.
DOI: 10.5061/dryad.p03j0/8
title: COL4A5_Reproductive_success

description: .csv file of data used to explore relationship between COL4A5 and annual reproductive success
DOI: 10.5061/dryad.p03j0/9
title: BillLength_museum_specimens

description: .csv file of bill lengths of museum specimens from UK and the Netherlands
DOI: 10.5061/dryad.p8k8d/1
title: Figure S1

description: Principal component analysis (PCA) of specimens of Peperomia segregata and Peperomia glabella and varietities. The red dots are the specimens of Peperomia segregata and the black dots are the specimens of Peperomia glabella. The blue dots are the specimens identified as Peperomia glabela var. glabella, the pink dots are the specimens identified as Peperomia glabella var. nervulosa, the green dots are the specimens identified as Peperomia glabella var. nudipetiolata and the purple dots are the specimens identified as Peperomia glabella var. nigropunctata.
DOI: 10.5061/dryad.q2932/1
title: Larval phenotypes

description: Phenotypes of all larvae used in study.
DOI: 10.5061/dryad.r5d10/1
title: fossil time series

description: Zip file contains all fossil time series analyzed in the paper.
DOI: 10.5061/dryad.r667q/1
title: flowering intensity_5_Shorea_spp
DOI: 10.5061/dryad.r9f11/1
title: Figures1-4

description: CSV files containing the data for the analyses presented in Figures 1-4.
DOI: 10.5061/dryad.r9f11/2
title: Figure 5

description: CSV files containing the data used in the genetic capture-recapture analysis presented in Figure 5.  MARKinput.zip contains the input files for the genetic capture-recapture analyses, and Figure5.csv contains the model-averaged transition probabilities for both study plots.
DOI: 10.5061/dryad.02sk7/10
title: Physconelloides concatenated alignment

description: Concatenated sequence alignment of nuclear exons from ground-dove body lice and the outgroup.
DOI: 10.5061/dryad.02sk7/11
title: Physconelloides partitions

description: Partitions file for the concatenated nuclear exon alignment of ground-dove body lice. The file is an output file from PartitionFinder2.
DOI: 10.5061/dryad.02sk7/4
title: Physconelloides concatenated phylogeny

description: Tree file of ground-dove body louse phylogeny estimated from a partitioned concatenated alignment in RAxML.
DOI: 10.5061/dryad.02sk7/5
title: Physconelloides mt phylogeny

description: Tree file of ground-dove body louse phylogeny estimated from mitochondrial sequence data in RAxML.
DOI: 10.5061/dryad.02sk7/6
title: Physconelloides mt phylogeny BEAST

description: Tree file of ground-dove louse phylogeny estimated from mitochondrial sequence data in BEAST.
DOI: 10.5061/dryad.02sk7/7
title: Physconelloides mt BEAST XML

description: XML file of ground-dove lice used as input for BEAST2 analysis of mitochondrial sequence data.
DOI: 10.5061/dryad.02sk7/8
title: Physconelloides semistrict consensus phylogeny

description: Tree file of a semistrict consensus phylogeny of ground-dove body lice. The phylogeny is a consensus of the concatenated, ASTRAL, ASTRID, and mitochondrial phylogenies.
DOI: 10.5061/dryad.02sk7/9
title: Physconelloides gene trees

description: Gene trees from nuclear exons of ground-dove body lice. All trees were estimated in RAxML.
DOI: 10.5061/dryad.19526/5
title: morbey_diel

description: This file has data for the analysis of onset and end of diel activity at Old Cut Research Station (42.584 N, 80.397 W). See readme.txt for details.
DOI: 10.5061/dryad.19526/6
title: morbey_flights

description: This file has data on inter-tower flights after departure from the Old Cut region (within 20 km of 42.485 N, 80.397 W). See readme.txt for details.
DOI: 10.5061/dryad.3qn05/1
title: Plant, aphid, dispersal and temperature data

description: Data for A. nerii and A. asclepiadis population counts, plant responses (growth, death, latex, trichomes, biomass), A. nerii and A. asclepiadis dispersal, and temperature. Column headings are described on the first tab. Collected over the course of five weeks in 2014 in growth chambers at the University of Toronto.
DOI: 10.5061/dryad.497nj/1
title: Raw data Rusman et al Dealing with mutualists and antagonists: Specificity of plant-mediated interactions between herbivores and flower visitors, and consequences for plant fitness

description: File containing raw data of pollinators visitations, pollen beetle adult abundance, pollen beetle larvae numbers and weights, and plant seed set.
DOI: 10.5061/dryad.4cb86/1
title: Supplementary Figure

description: Measurement errors using a medical CT-scanner and high resolution CT scanner (Nikon XT H 225 ST). WER and WWI of Nautilus pompilius (PIM 7825) were measured in order to estimate measurement errors through ontogeny.
DOI: 10.5061/dryad.4cb86/2
title: Supplementary Table

description: Raw data of the measurements.
DOI: 10.5061/dryad.53t31/1
title: Data for 'Exams Disadvantage Women in Introductory Biology'

description: Data on fall 2016 students across large intro biology classes at the University of Minnesota, along with Motivated Strategies for Learning Questionnaire (MSLQ) survey data on a subset of those students.
DOI: 10.5061/dryad.5q1q6/1
title: Death Assemblage - Arkle 2017

description: Raw abundances of death assemblage data from seven localities around St. Croix, USVI. Singletons have been removed and bivalve abundances have been halved to provide a minimum number of individuals (MNI). First two letters in row names (sites) indicate locality (SC=Smuggler's Cove, CH=Christiansted Harbor, PP=Power Plant, SR=Salt River Bay, MP=Molasses Pier, HP=Ha'Penny Bay, DS=Dump Site). First set of numbers in sample labels indicate position on the transect (in meters). Letters B,C, and D indicate depth (see text), and numbers 11 and 12 indicate sampling years (2011 and 2012, respectively). Columns are species names.
DOI: 10.5061/dryad.5q1q6/2
title: Life Assemblage - Arkle 2017

description: Raw abundances of life assemblage data from seven localities around St. Croix, USVI. Singletons have been removed. First two letters in row names (sites) indicate locality (SC=Smuggler's Cove, CH=Christiansted Harbor, PP=Power Plant, SR=Salt River Bay, MP=Molasses Pier, HP=Ha'Penny Bay, DS=Dump Site). First set of numbers in sample labels indicate position on the transect (in meters). Letter A indicates that all are living individuals, and numbers 11 and 12 indicate sampling years (2011 and 2012, respectively). Columns are species names.
DOI: 10.5061/dryad.6v5hq/1
title: DryadDataAmNatNovember2017ThreeTraits

description: Table of morphological data: maximum body length, mean relative hindlimb length, and mean number of scales across the snout.
DOI: 10.5061/dryad.7j4t8/1
title: X-Ray Powder Diffraction raw data for G2M-(Pt3/Pd7)

description: The characteristic peaks for XRD of Pd(0), Pt(0), G4M and G2M-(Pt3/Pd7) .
DOI: 10.5061/dryad.7j4t8/2
title: X-Ray Powder Diffraction raw data for G3M-(Pt3/Pd7)

description: The characteristic peaks for XRD of Pd(0), Pt(0), G4M and GnM-(Pt3/Pd7)
DOI: 10.5061/dryad.7j4t8/3
title: X-Ray Powder Diffraction raw data for  GnM-(Pt3/Pd7)
DOI: 10.5061/dryad.7j4t8/4
title: X-Ray Powder Diffraction raw data for  GnM-(Pt3/Pd7)
DOI: 10.5061/dryad.7j4t8/5
title: X-Ray Powder Diffraction raw data for GnM-Pd
DOI: 10.5061/dryad.7mp24/1
title: data_lippens_et_al_jeb

description: Data on mouse body mass, Heligmosomoides polygyrus fecal egg count and number, mouse and Heligmosomoides polygyrus gene expression
DOI: 10.5061/dryad.7tp60/1
title: GS_LD_Aspinicauda