cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xedf9t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.160023 -32.614025, 149.160023 -32.616271, 149.162269 -32.616271, 149.162269 -32.614025, 149.160023 -32.614025))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055641-240626123714530/datasets/export for details.
DOI: 10.15468/dl.nmgftg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.312969 -37.11236, 145.312969 -37.119098, 145.315215 -37.119098, 145.315215 -37.114606, 145.317461 -37.114606, 145.317461 -37.11236, 145.312969 -37.11236))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055640-240626123714530/datasets/export for details.
DOI: 10.15468/dl.4ugjfu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylella fastidiosa Wells et al., 1987)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen)",
 "Country is one of (United States of America)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 20000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055643-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wb44hy
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.192316 -37.114606, 144.192316 -37.119098, 144.194561 -37.119098, 144.194561 -37.114606, 144.192316 -37.114606))"
 ]
}

 The dataset includes 47 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055644-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/kzdh-sf07
title: AMI Network Traffic Dataset: DDoS Attack Analysis Captured by CICFlowMeter

description: Smart grid, an application of Internet of Things (IoT) is modern power grid that encompasses power and communication network from generation to utilization. Home Area Network (HAN), Field or Neighborhood Area Network (FAN/NAN) and Wide Area network (NAN) using Wireless LAN and Wireless/Wired WAN protocols are employed from generation to utilization . Advanced Metering Infrastructure, a utilization side infrastructure facilitates communication between smart meters and the server where energy efficient protocols are mandate to support smart grid . Under such circumstance, the smart devices involved in bidirectional communication is prone to diverse cyber threats due to diversity of devices, protocols, application programming interfaces and light weight cryptographic algorithms. Among the cyber threats, Distributed Denial of Service (DDoS) attack is one of the prominent threats that would result in unavailability of service.
DOI: 10.15468/dl.p49dbr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.258838 -32.614025, 149.258838 -32.616271, 149.26333 -32.616271, 149.26333 -32.614025, 149.258838 -32.614025))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055645-240626123714530/datasets/export for details.
DOI: 10.15468/dl.sknn9q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.133305 -37.114606, 145.133305 -37.119098, 145.137797 -37.119098, 145.137797 -37.114606, 145.133305 -37.114606))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055646-240626123714530/datasets/export for details.
DOI: 10.15468/dl.s3q896
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.595708 -32.614025, 149.595708 -32.618517, 149.6002 -32.618517, 149.6002 -32.614025, 149.595708 -32.614025)), ((149.6002 -32.618517, 149.6002 -32.620762, 149.602445 -32.620762, 149.602445 -32.618517, 149.6002 -32.618517)))"
 ]
}

 The dataset includes 38 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055647-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/0887c84c-5c17-4566-aa75-663c2faddb0a
title: Using Nanoplasmonic Metasurfaces to Construct Miniaturised Marine Ecosystem Sensors (thesis data)
DOI: 10.15468/dl.9krawh
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((142.741529 -37.105623, 142.741529 -37.107869, 142.739284 -37.107869, 142.739284 -37.11236, 142.746021 -37.11236, 142.746021 -37.114606, 142.748267 -37.114606, 142.748267 -37.119098, 142.755004 -37.119098, 142.755004 -37.121344, 142.761742 -37.121344, 142.761742 -37.123589, 142.763987 -37.123589, 142.763987 -37.128081, 142.770725 -37.128081, 142.770725 -37.119098, 142.763987 -37.119098, 142.763987 -37.114606, 142.761742 -37.114606, 142.761742 -37.11236, 142.748267 -37.11236, 142.748267 -37.107869, 142.746021 -37.107869, 142.746021 -37.105623, 142.741529 -37.105623))"
 ]
}

 The dataset includes 128 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055648-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.234bgd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.993834 -32.618517, 148.993834 -32.620762, 148.99608 -32.620762, 148.99608 -32.618517, 148.993834 -32.618517))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055649-240626123714530/datasets/export for details.
DOI: 10.15468/dl.6t7cru
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.319475 -32.618517, 149.319475 -32.623008, 149.326212 -32.623008, 149.326212 -32.620762, 149.323966 -32.620762, 149.323966 -32.618517, 149.319475 -32.618517)), ((149.326212 -32.623008, 149.326212 -32.6275, 149.328458 -32.6275, 149.328458 -32.623008, 149.326212 -32.623008)))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055650-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpmv73
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.295003 -37.110115, 145.295003 -37.123589, 145.297249 -37.123589, 145.297249 -37.110115, 145.295003 -37.110115))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055651-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26518690
title: Supplementary files: The infectious complications of ABO incompatibility in renal transplant patients: A meta-analysis

description: Supplementary files: The infectious complications of ABO incompatibility in renal transplant patients: A meta-analysis
DOI: 10.6084/m9.figshare.26518690.v1
title: Supplementary files: The infectious complications of ABO incompatibility in renal transplant patients: A meta-analysis

description: Supplementary files: The infectious complications of ABO incompatibility in renal transplant patients: A meta-analysis
DOI: 10.15468/dl.c8k9ve
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.526088 -32.611779, 149.526088 -32.614025, 149.53058 -32.614025, 149.53058 -32.611779, 149.526088 -32.611779)), ((149.53058 -32.614025, 149.53058 -32.618517, 149.526088 -32.618517, 149.526088 -32.623008, 149.532826 -32.623008, 149.532826 -32.614025, 149.53058 -32.614025)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055653-240626123714530/datasets/export for details.
DOI: 10.15468/dl.etjt9s
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.070423 -37.107869, 145.070423 -37.11236, 145.068177 -37.11236, 145.068177 -37.114606, 145.063686 -37.114606, 145.063686 -37.119098, 145.056948 -37.119098, 145.056948 -37.121344, 145.054702 -37.121344, 145.054702 -37.123589, 145.052457 -37.123589, 145.052457 -37.128081, 145.054702 -37.128081, 145.054702 -37.130327, 145.068177 -37.130327, 145.068177 -37.128081, 145.072669 -37.128081, 145.072669 -37.11236, 145.07716 -37.11236, 145.07716 -37.107869, 145.070423 -37.107869))"
 ]
}

 The dataset includes 121 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055654-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j49djz
title: Occurrence Download

description: A dataset containing 3874 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Equus ferus Boddaert, 1785"
 ]
}

 The dataset includes 3874 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055652-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2c6j6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.110847 -37.119098, 145.110847 -37.128081, 145.113093 -37.128081, 145.113093 -37.119098, 145.110847 -37.119098))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055656-240626123714530/datasets/export for details.
DOI: 10.15468/dl.v3u7tr
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.761897 -32.618517, 149.768635 -32.618517, 149.768635 -32.611779, 149.764143 -32.611779, 149.764143 -32.614025, 149.761897 -32.614025, 149.761897 -32.618517)), ((149.761897 -32.618517, 149.757406 -32.618517, 149.757406 -32.620762, 149.761897 -32.620762, 149.761897 -32.618517)))"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055655-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9k2rs
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylella fastidiosa Wells et al., 1987)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen)",
 "Country is one of (United States of America)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 2000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055657-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9129398
title: Contrastive Language Image Pretraining by openai
DOI: 10.15468/dl.7z5s69
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.348902 -37.119098, 145.348902 -37.123589, 145.35564 -37.123589, 145.35564 -37.119098, 145.348902 -37.119098))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055659-240626123714530/datasets/export for details.
DOI: 10.15468/dl.2ncpk7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.791093 -32.618517, 149.791093 -32.620762, 149.800076 -32.620762, 149.800076 -32.618517, 149.791093 -32.618517))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055658-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jnusu2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.195956 -32.620762, 149.195956 -32.623008, 149.198202 -32.623008, 149.198202 -32.6275, 149.200447 -32.6275, 149.200447 -32.625254, 149.202693 -32.625254, 149.202693 -32.623008, 149.200447 -32.623008, 149.200447 -32.620762, 149.195956 -32.620762))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055660-240626123714530/datasets/export for details.
DOI: 10.15468/dl.t3wg4v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.843985 -37.119098, 147.843985 -37.123589, 147.846231 -37.123589, 147.846231 -37.119098, 147.843985 -37.119098))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055661-240626123714530/datasets/export for details.
DOI: 10.15468/dl.vkwfae
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.243118 -32.620762, 149.243118 -32.623008, 149.245363 -32.623008, 149.245363 -32.620762, 149.243118 -32.620762))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055662-240626123714530/datasets/export for details.
DOI: 10.15468/dl.yhq5xf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lissachatina fulica (Bowdich, 1822))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen)",
 "Country is one of (Australia)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 20000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055664-240626123714530/datasets/export for details.
DOI: 10.15468/dl.hwm95k
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((142.561866 -37.128081, 142.561866 -37.130327, 142.564111 -37.130327, 142.564111 -37.128081, 142.561866 -37.128081))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055663-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13253568
title: Single cell sequencing data of PBMC and CSF from a cohort of Multiple Sclerosis patients and other neurological disease controls

description: Neuroinflammation is often characterised by immune cell infiltrates in the cerebrospinal fluid (CSF). Here we apply single-cell RNA sequencing to explore the functional characteristics of these cells in patients with various inflammatory, infectious and non-inflammatory neurological disorders. We show that CSF is distinct from the peripheral blood in terms of both cellular composition and gene expression. We report that the cellular and transcriptional landscape of CSF is altered in neuroinflammation, but is strikingly similar across different neuroinflammatory disorders. We find clonal expansion of CSF B and T cells in all disorders but most pronounced in inflammatory diseases, and we functionally characterise the transcriptional features of these cells. Finally, we explore the genetic control of gene expression in CSF lymphocytes. Our results highlight the common features of immune cells in the CSF compartment across diverse neurological diseases and may help to identify new targets for drug development or repurposing in Multiple Sclerosis. 

This dataset contains a tarball with six files:



A Seurat object with 5' single-cell gene expression data for all cells in the dataset

A Seurat object with B cells only, containing 5' single-cell gene expression data and VDJ data in the metadata

A Seurat object with T cells only, containing 5' single-cell gene expression data and VDJ data in the metadata

Separate .csv files with the metadata alone for each of the three datasets


These data have undergone very light quality control and contain only the raw, non-normalised RNA counts in the RNA assay (adjusted only for ambient RNA contamination). Details of QC steps used in the paper are given in the github. Please note that these data were generated across two sites and across multiple batches, and so any analysis should account for this potential source of technical variability. Metadata include the following key columns:



batch_id: the batch 

source: whether the sample is from CSF or PBMC

processing_site: whether the sample was processed in Munich or Cambridge

Category: the diagnostic group (MS, Other Inflammatory Neurological Disease, Other Inflammatory Neurological Disease - Infection, and Non-inflammatory Neurological Disease)

Sex

OCB: whether the patient had CSF oligoclonal bands 

fully_anonymous_pseudoid: donor ID

ann_celltypist_lowres: automated cell type assigment at low res 

ann_celltypist_highres: automated cell type assigment at high res


VDJ datasets (B and T cells) contain many additional metadata columns with information on the VDJ and VJ transcripts expressed by each cell.
DOI: 10.5281/zenodo.13253569
title: Single cell sequencing data of PBMC and CSF from a cohort of Multiple Sclerosis patients and other neurological disease controls

description: Neuroinflammation is often characterised by immune cell infiltrates in the cerebrospinal fluid (CSF). Here we apply single-cell RNA sequencing to explore the functional characteristics of these cells in patients with various inflammatory, infectious and non-inflammatory neurological disorders. We show that CSF is distinct from the peripheral blood in terms of both cellular composition and gene expression. We report that the cellular and transcriptional landscape of CSF is altered in neuroinflammation, but is strikingly similar across different neuroinflammatory disorders. We find clonal expansion of CSF B and T cells in all disorders but most pronounced in inflammatory diseases, and we functionally characterise the transcriptional features of these cells. Finally, we explore the genetic control of gene expression in CSF lymphocytes. Our results highlight the common features of immune cells in the CSF compartment across diverse neurological diseases and may help to identify new targets for drug development or repurposing in Multiple Sclerosis. 

This dataset contains a tarball with six files:



A Seurat object with 5' single-cell gene expression data for all cells in the dataset

A Seurat object with B cells only, containing 5' single-cell gene expression data and VDJ data in the metadata

A Seurat object with T cells only, containing 5' single-cell gene expression data and VDJ data in the metadata

Separate .csv files with the metadata alone for each of the three datasets


These data have undergone very light quality control and contain only the raw, non-normalised RNA counts in the RNA assay (adjusted only for ambient RNA contamination). Details of QC steps used in the paper are given in the github. Please note that these data were generated across two sites and across multiple batches, and so any analysis should account for this potential source of technical variability. Metadata include the following key columns:



batch_id: the batch 

source: whether the sample is from CSF or PBMC

processing_site: whether the sample was processed in Munich or Cambridge

Category: the diagnostic group (MS, Other Inflammatory Neurological Disease, Other Inflammatory Neurological Disease - Infection, and Non-inflammatory Neurological Disease)

Sex

OCB: whether the patient had CSF oligoclonal bands 

fully_anonymous_pseudoid: donor ID

ann_celltypist_lowres: automated cell type assigment at low res 

ann_celltypist_highres: automated cell type assigment at high res


VDJ datasets (B and T cells) contain many additional metadata columns with information on the VDJ and VJ transcripts expressed by each cell.
DOI: 10.15468/dl.7tthty
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Didymosphenia geminatum (Lyngbye) M.Schmidt, 1899)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen)",
 "Country is one of (United States of America, Canada)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 20000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055665-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zsbvs
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is one of (CHN.4_1, TWN.1_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Taxus L."
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055667-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13133874
title: Out of the blue: Detection of a unique highly pathogenic avian influenza virus of subtype H7N5 in Germany: Data sets on phylogenetic analyses

description: In June 2024, a highly pathogenic avian influenza virus of subtype H7N5 was detected in a single laying hen holding in Germany. Closest relatives of the eight viral genome segments were among recent low pathogenic (LP) viruses from Asia and Europe. No further detections of this unique virus or its presumed LP precursor have been made in poultry or wild birds.