cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.99c8a8
title: Occurrence Download

description: A dataset containing 571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Crotalus durissus Linnaeus, 1758"
 ]
}

 The dataset includes 571 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307495-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7sacg
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Geastrum inpaense T.S.Cabral, B.D.B.Silva & Baseia"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0390541-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4pks2
title: Occurrence Download

description: A dataset containing 13432 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptodeira Fitzinger, 1843"
 ]
}

 The dataset includes 13432 records from 230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0275150-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d87czw
title: Occurrence Download

description: A dataset containing 6501 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 6501 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251783-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdgzv7
title: Occurrence Download

description: A dataset containing 3706 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Chrysanthemum zawadskii Herbich, 1831",
 "TaxonKey is Chrysanthemum ×morifolium Ramat."
 ]
}

 The dataset includes 3706 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106774-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkycc7
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthopleura echinata (Barnes, 1824)"
 ]
}

 The dataset includes 253 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010211-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krvyjt
title: Occurrence Download

description: A dataset containing 590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 1970",
 "TaxonKey is Bactrocera philippinensis Drew & Hancock, 1994",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 590 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258381-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cef5p6
title: Occurrence Download

description: A dataset containing 11092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dictamnus L."
 ]
}

 The dataset includes 11092 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292444-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjqild
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podostemum irgangii C.T.Philbrick & Novelo"
 ]
}

 The dataset includes 42 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010211-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enf8j8
title: Occurrence Download

description: A dataset containing 63915 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucopogon R.Br."
 ]
}

 The dataset includes 63915 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227991-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnec2f
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Penelopina nigra (Fraser, 1852)"
 ]
}

 The dataset includes 33 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0314929-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rx4pb
title: Occurrence Download

description: A dataset containing 60629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erigeron sumatrensis Retz."
 ]
}

 The dataset includes 60629 records from 435 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288248-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4knspg
title: Occurrence Download

description: A dataset containing 17784 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Land Birds - Construction and Reservoir Filling Phases: Maçãs and Angueira river valleys [2010-2014]"
 ]
}

 The dataset includes 17784 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015399-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.du7zat
title: Occurrence Download

description: A dataset containing 33851 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-115.30268 31.91701,-113.72699 31.91701,-113.72699 33.25464,-115.30268 33.25464,-115.30268 31.91701))",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 33851 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015397-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfjv58
title: Occurrence Download

description: A dataset containing 19665 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Land Birds - Construction and Reservoir Filling Phases: stream weirs in the Sabor tributaries [2010-2014]"
 ]
}

 The dataset includes 19665 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015400-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/c30028e97bf7ec5be4fb72d08ab64bd2
title: Precipitation measurements from historic and current standard, storage and recording rain gauges at the Andrews Experimental Forest, 1951 to present

description: Andrews Forest precipitation has been measured continuously using various rain gage types since 1951. Most of these rain gages are standard (non-recording) gages with 7.5 or 8 inch orifices or large capacity storage gages intended for sites with limited access collected irregularly over longer intervals. Recording rain gages have also been established to collect higher temporal resolutions (e.g., 5 minute or 15 minute) and also used as a means of parsing (“prorating”) these periodic interval measurements from these standard and storage gages into daily totals. This data set includes an inventory of all rain gages that have operated within the Andrews as well as one site in the nearby Wildcat RNA and one in the town of Blue River. The inventory includes information regarding the date range of operation, gage location, type of gage, the rain network within which it was established, general availability of data and descriptive notes. A second table includes all of the raw measurement data for these non-recording gages over every interval where data were taken, and additionally includes the corresponding recording gage and its measurement total used to prorate data into a daily record. A third table includes the prorated daily data for all of these standard and storage gages as well as the true daily totals for two recording rain gages. A fourth table includes high temporal resolution for one early recording gage at Forks and the Mack Creek recording gage. Note that while precipitation data associated with the 6 benchmark stations are included in this rain gage inventory (Entity 1), the daily and high temporal resolution data for these sites were available through a separate meteorological data set, database code MS001, until 2025. In 2025, the benchmark station data was migrated here and will be combined with the Forks and Mack Creek data.
DOI: 10.6084/m9.figshare.25749159
title: NC Sharks Paired Fecal and Stomach Metabarcoding data

description: Metabarcoding results from fecal swabs and stomach contents from sharks off the coast of North Carolina
DOI: 10.6084/m9.figshare.25749159.v1
title: NC Sharks Paired Fecal and Stomach Metabarcoding data

description: Metabarcoding results from fecal swabs and stomach contents from sharks off the coast of North Carolina
DOI: 10.15468/dl.q7kwx3
title: Occurrence Download

description: A dataset containing 35687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gymnadenia conopsea, Gymnadenia densiflora, Gymnadenia densiflora, Gymnadenia vernalis, Gymnadenia splendida)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 35687 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015403-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjkeu6
title: Occurrence Download

description: A dataset containing 49788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epiphyas postvittana",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 49788 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015402-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15588975
title: Data, models, and additional code for MDtrajNet training and validation

description: Data, models, and additional code for training and validating MDtrajNet for publication



Fuchun Ge, Pavlo O. Dral*. Artificial Intelligence for Direct Prediction of Molecular Dynamics Across Chemical Space. 2025. Preprint on arXiv: https://arxiv.org/abs/2505.16301 (2025.05.22).


This repository contains:



MD trajectory files propagated with MLatom, in Python npz format. The file names are descriptive. The files contain trajectory snapshots with xyz coordinates, species, and time. They can be loaded as, e.g., trajs = [dict(np.load(f'/mlatom/projects/4D/datasets/trajs/ethanol/traj{i+1}.npz')) for i in range(3)]; model.train(trajectories=trajs,...).

The MDtrajNet model files in .pt format. They can be loaded with MLatom (https://github.com/dralgroup/mlatom).

The custom code lj.py for generating the reference trajectory with the LJ potential. It uses the custom model class passed to MLatom.


The file names are self-descriptive.
DOI: 10.5281/zenodo.15588976
title: Data, models, and additional code for MDtrajNet training and validation

description: Data, models, and additional code for training and validating MDtrajNet for publication



Fuchun Ge, Pavlo O. Dral*. Artificial Intelligence for Direct Prediction of Molecular Dynamics Across Chemical Space. 2025. Preprint on arXiv: https://arxiv.org/abs/2505.16301 (2025.05.22).


This repository contains:



MD trajectory files propagated with MLatom, in Python npz format. The file names are descriptive. The files contain trajectory snapshots with xyz coordinates, species, and time. They can be loaded as, e.g., trajs = [dict(np.load(f'/mlatom/projects/4D/datasets/trajs/ethanol/traj{i+1}.npz')) for i in range(3)]; model.train(trajectories=trajs,...).

The MDtrajNet model files in .pt format. They can be loaded with MLatom (https://github.com/dralgroup/mlatom).

The custom code lj.py for generating the reference trajectory with the LJ potential. It uses the custom model class passed to MLatom.


The file names are self-descriptive.
DOI: 10.15468/dl.yvfszd
title: Occurrence Download

description: A dataset containing 10098 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Land Birds - Construction and Reservoir Filling Phases: complementary work sites [2010-2014]"
 ]
}

 The dataset includes 10098 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015404-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhkwsa
title: Occurrence Download

description: A dataset containing 349 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Land Birds - Reservoir Filling Phase [2015]"
 ]
}

 The dataset includes 349 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015405-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18482173
title: Initiation age of the First-order Pull-apart Basin along the East Kunlun Fault: Newly Constrained by Syntectonic Calcite U-Pb Dating and Sedimentary Strata
DOI: 10.15468/dl.r8s3h2
title: Occurrence Download

description: A dataset containing 9899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Specimen, Living Specimen, Occurrence evidence)",
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Picea sitchensis"
 ]
}

 The dataset includes 9899 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015406-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fun99e
title: Occurrence Download

description: A dataset containing 5681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gymnadenia odoratissima, Gymnadenia odoratissima)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 5681 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015407-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uenzbf
title: Occurrence Download

description: A dataset containing 65534 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Land Birds - Construction and Reservoir Filling Phases (Sabor river valley) [2010-2014]"
 ]
}

 The dataset includes 65534 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015394-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x47mpt
title: Occurrence Download

description: A dataset containing 1817 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Phytobenthos – Ecological Monitoring Program [2012]"
 ]
}

 The dataset includes 1817 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015408-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7ppu2
title: Occurrence Download

description: A dataset containing 2394 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EDP Baixo Sabor: Phytoplankton - Ecological Monitoring Program [2016]"
 ]
}

 The dataset includes 2394 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015409-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epat2j
title: Occurrence Download

description: A dataset containing 13555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Geodetic datum assumed WGS84",
 "License is CC-BY 4.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Phaseolus vulgaris"
 ]
}

 The dataset includes 13555 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015410-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18495764
title: Global-scale analysis of biochar cropland application strategies and their climate change mitigation potential using machine learning

description: This dataset supports the study “Global-scale analysis of biochar cropland application strategies and their climate change mitigation potential using machine learning”. It compiles field-based observations extracted from published literature to quantify crop yield responses and greenhouse gas emission changes (CO2, CH4, and N2O) following biochar application in croplands. 

The original literature data were curated, cleaned, and standardized to construct a preprocessed dataset for machine learning. The dataset includes separate files for crop yield response ratios and greenhouse gas response ratios, as well as a master dataset that integrates all data, with accompanying metadata describing file structure, variable abbreviations, and data characteristics.
DOI: 10.15468/dl.jf7tm5
title: Occurrence Download

description: A dataset containing 20435 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, scientificname, decimallatitude, decimallongitude, eventdate, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= -33.06103686093294
 AND decimallatitude &lt;= -28.773895969281842
 AND decimallongitude &gt;= 124.49902042620815
 AND decimallongitude &lt;= 133.58679704081885
 AND GBIF_Within('POLYGON ((133.586797 -33.061037, 133.586797 -28.773896, 124.499020 -28.773896, 124.499020 -33.061037, 133.586797 -33.061037))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 20435 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015391-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ccrgjy
title: Occurrence Download

description: A dataset containing 316606 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Odonata, Decapoda, Diptera, Coleoptera, Hemiptera, Lepidoptera, Ephemeroptera, Scolopendromorpha, Megaloptera)"
 ]
}

 The dataset includes 316606 records from 1305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015367-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112039983
title: Cuneiform Tablet 1913.14.1708, Spurlock 1913.14.1708

description: [Text Description:] Delivery of silver from barley ❧ [Text or Publication Number Note:] Spurlock 1913.14.1708; CDLI P421559 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish Gray (10YR 8/2) -body Dark Gray (N 4/ 12.0% R) -dark discoloration White (N 9/ 78.7% R) -light discoloration ❧ [Physical Object Note:] 5.7 x 4.1 x 2.1 cm (45 g)
DOI: 10.15468/dl.ma4dtn
title: Occurrence Download

description: A dataset containing 31582 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macronectes halli Mathews, 1912"
 ]
}

 The dataset includes 31582 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0378167-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eu3jc7
title: Occurrence Download

description: A dataset containing 1422 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippocampus hippocampus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1422 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191969-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.