cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.phqjyx
title: Occurrence Download

description: A dataset containing 33308 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleusine coracana"
 ]
}

 The dataset includes 33308 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036456-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmdpc2
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Setaria sphacelata",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036460-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bv9kp2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Setaria sphacelata",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036458-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3p6se
title: Occurrence Download

description: A dataset containing 934 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salsola paulsenii"
 ]
}

 The dataset includes 934 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036459-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmhxqf
title: Occurrence Download

description: A dataset containing 133180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mugil cephalus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 133180 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036425-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5ke3x
title: Occurrence Download

description: A dataset containing 2007 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleusine africana"
 ]
}

 The dataset includes 2007 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036461-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7rjg8
title: Occurrence Download

description: A dataset containing 61258 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arabidopsis arenosa"
 ]
}

 The dataset includes 61258 records from 389 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036364-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0436265
title: Data for: Photosystems in the eye-like organelles of heterotrophic warnowiid dinoflagellates

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;&lt;span lang="EN-US"&gt;The function of the eye-like ocelloid in warnowiid dinoflagellates remains unknown because warnowiids are rare and uncultured, and scant molecular data exists for this group. While the ocelloid resembles the camera-type eyes found in animals, it is composed of organelles, with a highly modified plastid serving as the retinal body. By performing single-cell transcriptomics on cells isolated from the environment, we generate a comprehensive molecular dataset of warnowiids that includes all four known genera and one previously undescribed genus. We show that the heterotrophic members of this group have retained and express components of the ancestral photosynthetic mechanism, seemingly without photosystem II and RuBisCo. Our findings suggest that the ocelloid retinal body has repurposed the remaining photosystem to perform a function other than photosynthesis.&lt;/span&gt;&lt;/p&gt;
DOI: 10.14288/1.0436267
title: Molecular phylogenetics of sessile Dolium sedentarium, a petalomonad euglenid

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;The euglenids are a species-rich group of flagellates with varying modes of nutrition that can be found in diverse habitats. Phagotrophic members of this group gave rise to phototrophs and hold the key to understanding the evolution of euglenids as a whole, including the evolution of complex morphological characters like the euglenid pellicle. Yet to understand the evolution of these characters, a comprehensive sampling of molecular data is needed to correlate morphological and molecular data and to estimate a basic phylogenetic backbone of the group. While the availability of SSU rDNA and, more recently, multigene data from phagotrophic euglenids has improved, several ‘orphan’ taxa remain without any molecular data whatsoever. &lt;em&gt;Dolium&lt;/em&gt; &lt;em&gt;sedentarium&lt;/em&gt; is one such taxon: It is a rarely-observed phagotrophic euglenid that inhabits tropical benthic environments and is one of the few known sessile euglenids. Based on morphological characters, it has been thought of as part of the earliest branch of euglenids, the Petalomonadida. We report the first molecular sequencing data for &lt;em&gt;Dolium&lt;/em&gt; using single-cell transcriptomics. Both SSU rDNA and multigene phylogenies confirm it as a solitary branch within Petalomonadida.&lt;/p&gt;
DOI: 10.14288/1.0435743
title: Leaf litter decomposition rates in freshwaters differ by ecosystem

description: Terrestrial leaf litter is a large contributor to the metabolism and secondary production of freshwaters. Decomposition rates of leaf litter in freshwaters are often used as a proxy for ecosystem function; however, there are many sources of variation in decomposition rates within and between freshwater ecosystems that still have not been tested. In particular, the variation in decomposition rates between different freshwater ecosystems has rarely been addressed. Here we compared decomposition rates of red alder (Alnus rubra) leaf litter in streams, ponds and lakes within a single forest, while controlling for water temperatures. Using coarse-mesh and fine-mesh bags we found that when accounting for degree days, decomposition rates were higher in streams than ponds, and twice as high in streams than lakes, for either mesh size. The overall densities of invertebrates per leaf pack or per gram of leaf litter were very similar between the three ecosystems. However, detritivores were six-fold or more abundant in leaf packs from streams than those from lakes or ponds. There were fewer specialized macroinvertebrate consumers of leaf litter in the lentic environments. Specialized shredders such as Plecoptera were absent from lentic sites, and their absence in terms of decomposition rates was not compensated for by litter decomposition by generalist taxa. While we did not test the specific mechanisms responsible, differences may be associated with the relative temporal and spatial variation in the abundance of this resource and lack of specialist consumers in lakes and ponds.
DOI: 10.14288/1.0435927
title: ALMA-HUDF images

description: ALMA Band 6 images associated with the paper "An optimal ALMA image of the Hubble Ultra Deep Field in the era of JWST: obscured star formation and the cosmic far-infrared background".
DOI: 10.14288/1.0435940
title: Butterfly nectar foraging and flowering plant community data from field surveys in Victoria, British Columbia, Canada

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;The negative impacts of non-native species have been well documented, but some non-natives can play a positive role in native ecosystems. One way that non-native plants can positively interact with native butterflies is by provisioning nectar. Relatively little is known about the role of phenology in determining native butterfly visitation to non-native plants for nectar, yet flowering time directly controls nectar availability. Here, we investigate the phenological patterns of flowering by native and non-native plants and nectar foraging by native butterflies in an oak savanna on Vancouver Island, British Columbia, Canada. We also test whether native butterflies select nectar sources in proportion to their availability. We found that non-native plants were well integrated into butterfly nectar diets (83% of foraging observations) and that visitation to non-natives increased later in the season when native plants were no longer flowering. We also found that butterflies selected non-native flowers more often than expected based on their availability, suggesting that these plants represent a potentially valuable resource. Our study shows that non-native species have the potential to drive key species interactions in seasonal ecosystems. Management regimes focused on eradicating non-native species may need to re-consider their aims and evaluate resources that non-natives provide.&lt;/p&gt;
DOI: 10.14288/1.0436266
title: MALDI-TOF MS spectra of archaeological whale bone specimens from Atlantic Europe

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p class="MsoNormal" style="margin-bottom:0cm;text-align:justify;"&gt;&lt;span lang="EN-GB"&gt;Whale bones are regularly found during archaeological excavations. Identification of these specimens to taxonomic levels is problematic due to their fragmented state. This lack of taxonomic resolution limits understanding of the past spatiotemporal distributions of whale populations and reconstructions of early whaling activities. To overcome this challenge, we performed Zooarchaeology by Mass-Spectrometry on an unprecedented selection of 719 archaeological and palaeontological specimens of probable whale bone from Atlantic European contexts, from the Middle to Late Neolithic (c.3500–2500 BCE) to the eighteenth century CE.&lt;/span&gt;&lt;/p&gt; &lt;p class="MsoNormal" style="margin-bottom:0cm;text-align:justify;"&gt;&lt;span lang="EN-GB"&gt;The results show high numbers of Balaenidae (most likely North Atlantic right whale (&lt;em&gt;Eubalaena glacialis&lt;/em&gt;)) and grey whale (&lt;em&gt;Eschrichtius robustus&lt;/em&gt;) specimens, two species no longer present in the eastern North Atlantic. Many of these specimens derive from contexts associated with the known medieval whaling cultures of the Basques, northern Spaniards, Normans, Flemish, Frisians, Anglo-Saxons, and Scandinavians. This association raises the likelihood that pre-industrial whaling impacted these taxa, contributing to their extinction and extirpation respectively. Much lower numbers of other large whale taxa were identified, suggesting that it was once abundant and accessible whales that suffered the greatest long-term impact. The pattern of natural abundance leading to over-exploitation, well-documented for other taxa, is thus applicable to early whaling. &lt;/span&gt;&lt;/p&gt;
DOI: 10.14288/1.0435872
title: Daily solitude and well‐being associations in older dyads: Evidence from daily life assessments

description: Data and code for analyses for manuscript titled "Daily solitude and well‐being associations in older dyads: Evidence from daily life assessments"
DOI: 10.14288/1.0439803
title: Replication Data for: Automated, longitudinal measures of drinking behaviour provide insights into the social hierarchy in dairy cows

description: Water is an essential resource for dairy cattle, and in some circumstances cattle will compete with one another to gain access to water. Here we applied a Bayesian-based, Elo-rating method to assess the winning probabilities of 87 cows housed in a dynamic group and compared the resulting social hierarchies based on their steepness. We identified a hierarchy at the drinker with a steepness of 0.55±0.02 whereas the hierarchy detected at the feeder during the same time period was less steep (0.45±0.02), indicating smaller average differences between the winning probabilities of cows when competing for feed compared to competing for water. Individual cows’ winning probabilities at the feeder and drinker were moderately correlated (rs=0.55, P&lt;0.001). However, cows at both the lower and upper ends of the hierarchy demonstrated a consistent alignment. We compared drinker hierarchies between periods with THI above and below 72 and found similar steepness (0.54±0.03 and 0.56±0.03 respectively) and the individual winning probabilities of cows were highly correlated between hot and normal periods (rs=0.87, P&lt;0.001). Individual drinking behaviour was also associated with the drinker hierarchy, cows with higher winning probability had lower average daily visit frequency (hot: rs=-0.40, P&lt;0.01, normal: rs=-0.33, P&lt;0.01) and higher average daily water intake (hot: rs=0.38, P&lt;0.01, normal: rs=0.37, P&lt;0.01). We also found evidence that cows differ in when they drink, depending on their winning probability; less successful cows shifted their drinking times to before or after the visit peak after milking. Automatically identifying cows with consistently high or low winning probabilities using drinkers may inform grouping decisions and water provision on farms.
DOI: 10.14288/1.0436263
title: Native American use of cetaceans in pre-contact Oregon: Biomolecular and taphonomic analyses illuminate human-cetacean relationships: MALDI-TOF data

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;&lt;span lang="EN-US"&gt;This study characterizes how Native Americans living on the Oregon coast used whales and small cetaceans prior to European contact. We present an original analysis of a large subsample of archaeological cetacean remains from the Palmrose (35CLT47) site and new identifications from the previously analyzed Par-Tee (35CLT20) and Tahkenitch Landing (35DO130) sites. Using zooarchaeological and biomolecular analyses we report species presence and modification patterns to characterize use. Grays (&lt;em&gt;Eschrichtius&lt;/em&gt; &lt;em&gt;robustus&lt;/em&gt;) and humpbacks (&lt;em&gt;Megaptera&lt;/em&gt; &lt;em&gt;novaeangliae&lt;/em&gt;) were the most commonly identified whale species and a preferred source of food, oil, bone for tool manufacture, and possibly ligaments for sinew. Dolphins and porpoises, especially harbor porpoise (&lt;em&gt;Phocoena&lt;/em&gt; &lt;em&gt;phocoena&lt;/em&gt;), were a source of food and possibly bone for tool manufacture. While opportunistic hunting may have occurred, the presence of species such as blue (&lt;em&gt;Balaenoptera&lt;/em&gt; &lt;em&gt;musculus&lt;/em&gt;) and Cuvier’s beaked (&lt;em&gt;Ziphius&lt;/em&gt; &lt;em&gt;cavirostris&lt;/em&gt;) whales suggest collection of beached animals was an important acquisition strategy. Our study demonstrates the value of biomolecular analyses for improved species identifications/understanding of species richness, and the value of zooarchaeological analysis to fully understand dietary and cultural contributions of cetaceans to precontact lifeways on the Oregon coast.&lt;/span&gt;&lt;/p&gt;
DOI: 10.14288/1.0436264
title: Archaeology demonstrates sustainable Ancestral Coast Salish salmon stewardship over thousands of years pre-contact

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;&lt;span lang="EN-CA"&gt;Salmon are an essential component of the ecosystem in Tsleil-Waututh Nation’s traditional, ancestral, and unceded territory, centred on present-day Burrard Inlet, BC, Canada&lt;/span&gt;&lt;span lang="EN-CA"&gt;, where Tsleil-Waututh people have been harvesting salmon, along with a wide variety of other fishes, for millennia. Tsleil-Waututh Nation is an ancestral Coast Salish community that has called the Inlet home since time immemorial. This research assesses the continuity and sustainability of the salmon fishery at təmtəmíxʷtən, an ancestral Tsleil-Waututh settlement in the Inlet, over thousands of years before European contact (1792 CE). We apply Zooarchaeology by Mass Spectrometry (ZooMS) analysis to 245 archaeological salmon vertebrae to identify the species that were harvested by the Tsleil-Waututh community that lived at təmtəmíxʷtən. The results demonstrate that Tsleil-Waututh communities consistently and preferentially fished for chum salmon (&lt;em&gt;Oncorhynchus&lt;/em&gt; &lt;em&gt;keta&lt;/em&gt;) over the period of almost 3,000 years. The consistent abundance indicates a sustainable chum salmon fishery over that time and a strong salmon-to-people relationship through generations. This research supports Tsleil-Waututh Nation’s stewardship obligations under their ancestral legal principles to maintain conditions that uphold the Nation’s way of life.&lt;/span&gt;&lt;/p&gt;
DOI: 10.14288/1.0436262
title: Heatwave resilience of juvenile white sturgeon is associated with epigenetic and transcriptional alterations

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Heatwaves are increasing in frequency and severity, posing a significant threat to organisms globally. In aquatic environments, heatwaves are often associated with low environmental oxygen, which is a deadly combination for fish. However, surprisingly little is known about the capacity of fishes to withstand these interacting stressors. This issue is particularly critical for species of extreme conservation concern such as sturgeon. We assessed the tolerance of juvenile white sturgeon from an endangered population to heatwave exposure and investigated how this exposure affects tolerance to additional acute stressors. We measured whole-animal thermal and hypoxic performance and underlying epigenetic and transcriptional mechanisms. Sturgeon exposed to a simulated heatwave had increased thermal tolerance and exhibited complete compensation for the effects of acute hypoxia. These changes were associated with an increase in mRNA levels involved in thermal and hypoxic stress (hsp90a, hsp90b, hsp70 and hif1a) following these stressors. Global DNA methylation was sensitive to heatwave exposure and rapidly responded to acute thermal and hypoxia stress over the course of an hour. These data demonstrate that juvenile white sturgeon exhibit substantial resilience to heatwaves, associated with improved cross-tolerance to additional acute stressors and involving rapid responses in both epigenetic and transcriptional mechanisms.&lt;/p&gt;
DOI: 10.14288/1.0443567
title: Realization effect and gambling

description: The data are the experiment data for the manuscript "A clean slate: adapting the realization effect to online gambling and its effectiveness in people with gambling problems".
DOI: 10.14288/1.0436928
title: Immersive Multimedia as an Adjunctive Measure for Pain Control in Cancer Patients

description: This study seeks to explore the efficacy of immersive multimedia experiences as a practical adjunctive therapeutic intervention in the self-management of the chronic pain associated with cancer patients. The trial will be undertaken with 100 cancer patients who are experiencing chronic pain. Participants will be randomly assigned to either a virtual reality (VR) therapy group or a 2D computer based multimedia control group (50 subjects in each). They will undertake either a series of VR interventions, or 2D computer based multimedia control sessions in their own homes over a period of a month. The intervention will be used daily for a month to enable customization to the therapy and record data over a long enough period of time to account for any individual short-term changes in pain. The VR sessions will consist of using a VR head mounted display (HMD) and computer to explore interactive immersive environments. The control group will be exposed to similar 2D computer based multimedia experiences (without a VR headset) that on home computers. Pre, during, and post pain test scores and quality of sleep assessments will be recorded using standardized tools.
DOI: 10.14288/1.0436947
title: Genomic divergence and introgression between cryptic species of a widespread North American songbird

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Analysis of genomic variation among related populations can sometimes reveal distinct species that were previously undescribed due to similar morphological appearances, and close examination of such cases can provide much insight regarding speciation. Genomic data can also reveal the role of reticulated evolution in differentiation and speciation. White-breasted nuthatches (&lt;em&gt;Sitta carolinensis&lt;/em&gt;) are widely distributed North American songbirds that are currently classified as a single species but have been suspected to represent a case of cryptic speciation. Previous genetic analyses suggested four divergent groups, but it was unclear whether these represented multiple reproductively isolated species. Using extensive genomic sampling of over 350 white-breasted nuthatches from across North America and a new chromosome-level reference genome, we asked if white-breasted nuthatches are comprised of multiple species and whether introgression has occurred between divergent populations. Genomic variation of over 300,000 loci revealed four highly differentiated populations (Pacific, n = 45; Eastern, n = 23; Rocky Mountains North, n = 138; and Rocky Mountains South, n = 150) with geographic ranges that are adjacent. We observed a moderate degree of admixture between Rocky Mountain populations but only a small number of hybrids between the Rockies and the Eastern population. The rarity of hybrids together with high levels of differentiation between populations is supportive of populations having some level of reproductive isolation. Between populations, we show evidence for introgression from a divergent ghost lineage of white-breasted nuthatches into the Rocky Mountains South population, which is otherwise closely related to Rocky Mountains North. We conclude that white-breasted nuthatches are best considered at least 3 species and that ghost lineage introgression has contributed to differentiation between the two Rocky Mountain populations. White-breasted nuthatches provide a dramatic case of morphological similarity despite high genomic differentiation, and the varying levels of reproductive isolation among the four groups provide an example of the speciation continuum. &lt;/p&gt;
DOI: 10.6084/m9.figshare.28861565
title: basewithtreatment

description: Validation of the Nasopharyngeal Reflux Endoscopic Score (NRES) in the Diagnosis of Chronic Rhinosinusitis with Laryngopharyngeal Reflux Disease.<br>
DOI: 10.6084/m9.figshare.28861565.v1
title: basewithtreatment

description: Validation of the Nasopharyngeal Reflux Endoscopic Score (NRES) in the Diagnosis of Chronic Rhinosinusitis with Laryngopharyngeal Reflux Disease.<br>
DOI: 10.14288/1.0437108
title: Foot biomechanics during outdoor walking on varied terrain

description: These data were collected from ten healthy adults who walked on flat ground, slopes, and stairs while wearing two wearable sensors in their shoes.