cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8262305.v2
title: Raw Data from Variation of carbon contents in eelgrass (<i>Zostera marina</i>) sediments implied from depth profiles.

description: Seagrass meadows are able to store significant amounts of organic carbon in their underlying sediment, but global estimates are uncertain partly owing to spatio-temporal heterogeneity between and within areas and species. In order to provide robust estimates, there is a need to better understand the fate of, and mechanisms behind, organic carbon storage. In this observational study, we analyse a suite of biotic and abiotic parameters in sediment cores from 47 different eelgrass (<i>Zostera marina</i>) beds spanning the distributional range of the Northern Hemisphere. Depth profiles of particulate organic carbon (POC) revealed three patterns of vertical distribution where POC either increased, decreased or showed no pattern with sediment depth. These categories exhibited distinct profiles of <i>δ</i><sup>13</sup>C and C : N ratios, where high POC profiles had a proportionally larger storage of eelgrass-derived material whereas low POC profiles were dominated by phytoplanktonic and macroalgal material. However, high POC did not always translate into high carbon density. Nevertheless, this large-scale dataset provides evidence that the variability in organic matter source in response to natural and anthropogenic environmental changes affects the potential role of eelgrass beds as POC sinks, particularly where eelgrass decline is observed.
DOI: 10.6084/m9.figshare.8262305.v1
title: Raw Data from Variation of carbon contents in eelgrass (<i>Zostera marina</i>) sediments implied from depth profiles

description: Seagrass meadows are able to store significant amounts of organic carbon in their underlying sediment but global estimates are uncertain partly due to spatio-temporal heterogeneity between areas and species. In order to provide robust estimates, there is a need to better understand the fate of, and mechanisms behind, organic carbon storage. In this observational study, we analyse a suite of biotic and abiotic parameters in sediment cores from 47 different eelgrass (<i>Zostera marina</i>) beds spanning the distributional range of the Northern Hemisphere. Depth profiles revealed three patterns of vertical distribution where POC either increased, decreased or showed no distinct pattern with sediment depth. These categories exhibited distinct profiles of <i>δ</i><sup>13</sup>C and C:N ratios, where high POC profiles had a proportionally larger storage of eelgrass-derived material whereas low POC profiles were dominated by phytoplanktonic and macroalgal material. However, high POC did not always translate into high carbon density. Though high POC did not always translate into high carbon density, this large-scale dataset evidences that the variability in organic matter source in response to natural and anthropogenic environmental changes affects the potential role of eelgrass beds as POC sinks, particularly where eelgrass decline is observed.
DOI: 10.6084/m9.figshare.8267930
title: Electronic supplementary data from Arthropod–bacteria interactions influence assembly of aquatic host microbiome and pathogen defense.

description: Information on variables collected for each tadpole or water sample
DOI: 10.6084/m9.figshare.8267930.v1
title: Electronic supplementary data from Arthropod–bacteria interactions influence assembly of aquatic host microbiome and pathogen defense

description: Information on variables collected for each tadpole or water sample
DOI: 10.6084/m9.figshare.8283923
title: Analysis Code from Intraspecific sequence and gene expression variation contribute little to venom diversity in sidewinder rattlesnakes (<i>Crotalus cerastes</i>).

description: RMarkdown Script containing all code for data processing and analysis
DOI: 10.6084/m9.figshare.8283929
title: Final Data from Intraspecific sequence and gene expression variation contribute little to venom diversity in sidewinder rattlesnakes (<i>Crotalus cerastes</i>).

description: Data used for analysis to test for selection, differentiation, and correlation with expression
DOI: 10.6084/m9.figshare.8283923.v2
title: Analysis Code from Intraspecific sequence and gene expression variation contribute little to venom diversity in sidewinder rattlesnakes (<i>Crotalus cerastes</i>).

description: RMarkdown Script containing all code for data processing and analysis
DOI: 10.6084/m9.figshare.8283926
title: Supplemental Tables from Intraspecific sequence and gene expression variation contribute little to venom diversity in sidewinder rattlesnakes (<i>Crotalus cerastes</i>).

description: Tables S1, S2, and S3
DOI: 10.6084/m9.figshare.8283923.v1
title: Analysis Code from Intraspecific sequence and gene expression variation contribute little to venom diversity in Sidewinder Rattlesnakes (<i>Crotalus cerastes</i>)

description: RMarkdown Script containing all code for data processing and analysis
DOI: 10.6084/m9.figshare.8283929.v2
title: Final Data from Intraspecific sequence and gene expression variation contribute little to venom diversity in sidewinder rattlesnakes (<i>Crotalus cerastes</i>).

description: Data used for analysis to test for selection, differentiation, and correlation with expression
DOI: 10.6084/m9.figshare.8283926.v2
title: Supplemental Tables from Intraspecific sequence and gene expression variation contribute little to venom diversity in sidewinder rattlesnakes (<i>Crotalus cerastes</i>).

description: Tables S1, S2, and S3
DOI: 10.6084/m9.figshare.8283929.v1
title: Final Data from Intraspecific sequence and gene expression variation contribute little to venom diversity in Sidewinder Rattlesnakes (<i>Crotalus cerastes</i>)

description: Data used for analysis to test for selection, differentiation, and correlation with expression
DOI: 10.6084/m9.figshare.8283926.v1
title: Supplemental Tables from Intraspecific sequence and gene expression variation contribute little to venom diversity in Sidewinder Rattlesnakes (<i>Crotalus cerastes</i>)

description: Tables S1, S2, and S3
DOI: 10.6084/m9.figshare.8324318
title: Kinship Data from Hierarchical social modularity in gorillas.

description: Binary relatedness, pair-type and presence or absence within the same module, for all pairs of social units (groups or solitaries) in both the Lokoue and Mbeli C datasets
DOI: 10.6084/m9.figshare.8324312
title: Association Arrays from Hierarchical social modularity in gorillas.

description: Pairwise matrices of association between social units (groups and solitaries) for all datasets and both association indices (SR and BP)
DOI: 10.6084/m9.figshare.8324318.v2
title: Kinship Data from Hierarchical social modularity in gorillas.

description: Binary relatedness, pair-type and presence or absence within the same module, for all pairs of social units (groups or solitaries) in both the Lokoue and Mbeli C datasets
DOI: 10.6084/m9.figshare.8324312.v2
title: Association Arrays from Hierarchical social modularity in gorillas.

description: Pairwise matrices of association between social units (groups and solitaries) for all datasets and both association indices (SR and BP)
DOI: 10.6084/m9.figshare.8324309
title: R Code from Hierarchical social modularity in gorillas.

description: R code for conducting the analyses in this paper
DOI: 10.6084/m9.figshare.8324318.v1
title: Kinship Data from Hierarchical social modularity in gorillas

description: Binary relatedness, pair-type and presence or absence within the same module, for all pairs of social units (groups or solitaries) in both the Lokoue and Mbeli C datasets
DOI: 10.6084/m9.figshare.8324309.v2
title: R Code from Hierarchical social modularity in gorillas.

description: R code for conducting the analyses in this paper
DOI: 10.6084/m9.figshare.8324309.v1
title: R Code from Hierarchical social modularity in gorillas

description: R code for conducting the analyses in this paper
DOI: 10.6084/m9.figshare.8332235
title: Output file NBDA from Multi-network-based diffusion analysis reveals vertical cultural transmission of sponge tool use within dolphin matrilines.

description: R object containing results of multi-network NBDA - can be used to extract AIC table, variable support and model averaged estimates
DOI: 10.6084/m9.figshare.8332247
title: R code - home ranges and NBDA from Multi-network-based diffusion analysis reveals vertical cultural transmission of sponge tool use within dolphin matrilines.

description: R code for calculating home range overlaps and application of network-based diffusion analysis to sponging data
DOI: 10.6084/m9.figshare.8332235.v2
title: Output file NBDA from Multi-network-based diffusion analysis reveals vertical cultural transmission of sponge tool use within dolphin matrilines.

description: R object containing results of multi-network NBDA - can be used to extract AIC table, variable support and model averaged estimates
DOI: 10.6084/m9.figshare.8332235.v1
title: Output file NBDA from Multi-network-based diffusion analysis reveals vertical cultural transmission of sponge tool use within dolphin matrilines

description: R object containing results of multi-network NBDA - can be used to extract AIC table, variable support and model averaged estimates
DOI: 10.6084/m9.figshare.8332247.v2
title: R code - home ranges and NBDA from Multi-network-based diffusion analysis reveals vertical cultural transmission of sponge tool use within dolphin matrilines.

description: R code for calculating home range overlaps and application of network-based diffusion analysis to sponging data
DOI: 10.6084/m9.figshare.8332247.v1
title: R code - home ranges and NBDA from Multi-network-based diffusion analysis reveals vertical cultural transmission of sponge tool use within dolphin matrilines

description: R code for calculating home range overlaps and application of network-based diffusion analysis to sponging data
DOI: 10.6084/m9.figshare.8727305
title: Data from The legacy of larval infection on immunological dynamics over metamorphosis.

description: The legacy of larval infection on immunological dynamics over metamorphosis
DOI: 10.6084/m9.figshare.8727317
title: Table S1 from The legacy of larval infection on immunological dynamics over metamorphosis.

description: The impact of life stage parasite exposure and their interaction on gene expression in the gut and whole body
DOI: 10.6084/m9.figshare.8727305.v1
title: Data from The legacy of larval infection on immunological dynamics over metamorphosis

description: The legacy of larval infection on immunological dynamics over metamorphosis
DOI: 10.6084/m9.figshare.8727317.v2
title: Table S1 from The legacy of larval infection on immunological dynamics over metamorphosis.

description: The impact of life stage parasite exposure and their interaction on gene expression in the gut and whole body
DOI: 10.6084/m9.figshare.8791562
title: Supplementary Information from Host phylogenetic distance drives trends in virus virulence and transmissibility across the animal–human interface.

description: Databases of zoonoses (table 1) and all viruses (table 2) with variable descriptions (table 3) and references; model selection results (table 4) and best-fit model summaries (table 5) for all GAMs included in this study; output from the GAMs demonstrating the effect sizes of host phylogenetic order on human case fatality rates and transmissibility (table 6); and a review of key findings from past meta-analysis on zoonotic risk (table 6).
DOI: 10.6084/m9.figshare.8727317.v1
title: Table S1 from The legacy of larval infection on immunological dynamics over metamorphosis

description: The impact of life stage parasite exposure and their interaction on gene expression in the gut and whole body
DOI: 10.6084/m9.figshare.8791562.v2
title: Supplementary Information from Host phylogenetic distance drives trends in virus virulence and transmissibility across the animal–human interface.

description: Databases of zoonoses (table 1) and all viruses (table 2) with variable descriptions (table 3) and references; model selection results (table 4) and best-fit model summaries (table 5) for all GAMs included in this study; output from the GAMs demonstrating the effect sizes of host phylogenetic order on human case fatality rates and transmissibility (table 6); and a review of key findings from past meta-analysis on zoonotic risk (table 6).
DOI: 10.6084/m9.figshare.8791562.v1
title: Supplementary Information from Host phylogenetic distance drives trends in virus virulence and transmissibility across the animal–human interface

description: Databases of zoonoses (table 1) and all viruses (table 2) with variable descriptions (table 3) and references; model selection results (table 4) and best-fit model summaries (table 5) for all GAMs included in this study; output from the GAMs demonstrating the effect sizes of host phylogenetic order on human case fatality rates and transmissibility (table 6); and a review of key findings from past meta-analysis on zoonotic risk (table 6).
DOI: 10.6084/m9.figshare.8791634
title: Portland_08_09_2ages from Avian malaria-mediated population decline of a widespread iconic bird species.

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791646
title: Portland_07_08_2ages from Avian malaria-mediated population decline of a widespread iconic bird species.

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791634.v2
title: Portland_08_09_2ages from Avian malaria-mediated population decline of a widespread iconic bird species.

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791604
title: house sparrow parasites from Avian malaria-mediated population decline of a widespread iconic bird species.

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791634.v1
title: Portland_08_09_2ages from Avian malaria-mediated population decline of a widespread iconic bird species

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791607
title: house sparrow london survey from Avian malaria-mediated population decline of a widespread iconic bird species.

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.
DOI: 10.6084/m9.figshare.8791646.v2
title: Portland_07_08_2ages from Avian malaria-mediated population decline of a widespread iconic bird species.

description: Parasites have the capacity to affect animal populations by modifying host survival, and it is increasingly recognized that infectious disease can negatively impact biodiversity. Populations of the house sparrow (<i>Passer domesticus</i>) have declined in many European towns and cities, but the causes of these declines remain unclear. We investigated associations between parasite infection and house sparrow demography across suburban London where sparrow abundance has declined by 71% since 1995. <i>Plasmodium relictum</i> infection was found at higher prevalences (averaging 74%) in suburban London house sparrows than previously recorded in any wild bird population in Northern Europe. Survival rates of juvenile and adult sparrows and population growth rate were negatively related to <i>Plasmodium relictum</i> infection intensity. Other parasites were much less prevalent and exhibited no relationship with sparrow survival and no negative relationship with population growth. Low rates of co-infection suggested sparrows were not immunocompromised. Our findings indicate that <i>P. relictum</i> infection may be influencing house sparrow population dynamics in suburban areas. The demographic sensitivity of the house sparrow to <i>P. relictum</i> infection in London might reflect a recent increase in exposure to this parasite.