Title: EMBOSS developer's guide : bioinformatics programming /
Authors: Ison, Jon, 1972-; Rice, Peter, 1956-; Bleasby, Alan
Publisher: Cambridge University Press,
Year: 2011
Subjects: Smith, Glen; EMBOSS; Molecular biology Computer programs.; Systems Biology; Molecular Biology; Software; Computational Biology
Abstract: "The European Molecular Biology Open Software Suite (EMBOSS) is a high quality, well documented package of open source software tools for molecular biology. It includes over 200 applications for molecular sequence analysis and other common tasks in bioinformatics. It integrates the core applications with a range of popular third party software packages under a consistent and powerful command line interface. The software has many useful features; for example, it automatically copes with data in a variety of formats and allows for transparent retrieval of sequence data from the web"--
Contents: Preface -- Conventions -- Welcome to the EMBOSS developer's guide -- 1. Getting started -- 2. Your first EMBOSS application -- 3. Software development under EMBOSS -- 4. ACD file development -- 5. C programming -- 6.Programming with AJAX -- 7. Quality assurance -- 8. Application documentation standards -- 9. A complete application: seqret -- 10. Incorporating third-party applications -- Appendix A. ACD syntax reference -- Appendix B. C programming libraries -- Appendix C. C coding standards -- Appendix D. Code documentation standards -- Appendix E. Resources.