complete debridement and effective disinfection of the root canal space is an important prerequisite for achieving long - term success of nonsurgical endodontics . chemomechanical instrumentation reduces majority of infecting bacteria , together with their principal substrate of necrotic pulp debris but retention of microorganisms within the dentinal tubules is thought to be a source of persistent endodontic infection . the use of an intracanal medicament helps in the elimination of bacteria that remain even after cleaning and shaping , thereby making the environment conducive for periapical tissue repair . it is probable that the physiologic state of the cells , particularly in retreatment cases , is closest to the starvation phase . recent studies have also shown that e. faecalis is highly resistant to commonly used intracanal medicaments , such as calcium hydroxide . even 2% chlorhexidine gluconate has been used as an irrigant and intracanal medicament in endodontics . chlorhexidine has a broad spectrum antimicrobial activity targeting both gram - positive and gram - negative microbes . hence , the combination of chlorhexidine and calcium hydroxide as an intracanal medicament has also been tried to achieve the properties of both medicaments but the antimicrobial action of chlorhexidine was found to be reduced . morinda citrifolia , commercially known as noni , is famous as an important folk medicine and as a health drink . the juice of m. citrifolia has a broad range of therapeutic effects , including antibacterial , antifungal , antiviral , antitumor , antihelminthic , analgesic , hypotensive , anti - inflammatory , and immune - enhancing effects . the effectiveness of m. citrifolia with sodium hypochlorite and chlorhexidine gluconate to remove the smear layer from the canal walls of endodontically instrumented teeth was compared by murray et al . and it was concluded that 6% m. citrifolia can be used as an endodontic irrigant ( as per article after usage of irrigant regime it was concluded ) . a gel based on papain , a proteolytic cysteine enzyme , exhibits significant antibacterial and anti - inflammatory properties . it acts only on affected tissues , which lack the 1-antitrypsine plasmatic antiprotease that inhibits proteolysis in healthy tissues . in addition to papain , the chloramines present have the potential of dissolving carious dentin by means of chlorination of the partially degraded collagen . cosmetic and some medicinal products are made from the mucilaginous tissue in the center of the aloe vera leaf and is called as aloe vera gel . there is no study to comparatively evaluate the antimicrobial activity of natural extracts of m. citrifolia , papain , and aloe vera ( all in gel formulation ) , 2% chlorhexidine gel and calcium hydroxide , against enterococcus faecalis . hence , this study was undertaken to evaluate the disinfection of dentinal tubules when contaminated with e. faecalis using m. citrifolia gel , papain gel , and aloe vera when compared with calcium hydroxide and chlorhexidine gel . a rotary diamond disk was used to decoronate the teeth 5 mm below cementoenamel junction and the apical part of the root to obtain 6 mm of the middle third of the root . 3 ( mani inc , tachigi - ken , japan ) in a slow speed handpiece was used to standardize the internal diameter of the root canals . the blocks were treated in an ultrasonic bath of 17% ethylene diamine tetra acetic acid for 5 min followed by 3% naocl for 5 min to remove the organic and inorganic debris . the traces of chemicals used were removed by immersing the blocks in an ultrasonic bath containing distilled water for 5 min . the first cycle was at 121c and the second was with the blocks immersed in 1 ml of tryptone soya ( ts ) broth in individual microcentrifuge tubes . all the blocks were coated externally with paraffin wax . the test organism used for this study was e. faecalis , which is a gram - positive facultative anaerobic bacterium . e. faecalis ( atcc 29212 ) was grown in ts agar for 24 h. the culture was suspended in 5 ml of ts broth and incubated for 4 h at 37c and its turbidity was adjusted to 0.5 mcfarland standard . each dentin block was placed in presterilized microcentrifuge tubes containing 1 ml of the ts broth . fifty microliters of the inoculum containing the e. faecalis was transferred into each of the microcentrifuge tubes . at the end of 24 h purity of the culture was checked by subculturing 5 l of the broth from the incubated dentin blocks in ts broth on ts agar plates . contamination of the dentin blocks were carried out for a period of 21 days . at the end of 21 days the blocks were irrigated with 5 ml of sterile saline to remove the incubation broth . group 1 : saline ( negative control ) group 2 : calcium hydroxide group 4 : m. citrifolia gel group 5 : aloe vera gel group 6 : 2% chlorhexidine gel calcium hydroxide ( sigma  aldrich , mumbai , india ) was mixed with sterile saline in a ratio of 1.5:1 ( wt / vol ) to obtain a paste - like consistency . ltd , gujarat , india . ) was used as a thickening agent in the ratio of 2:1 ( vol / wt ) for group 3 ( papain raw extract taken from fruit ) , group 4 ( m. citrifolia raw extract taken from fruit ) , group 5 ( aloe vera raw extract taken from leaf ) , and group 6 ( chlorhexidine ) . hydroxyethyl cellulose is a nonionic , highly inert , and water - soluble agent and has been used in various studies for gel formation . the medicaments were placed inside the canals and sealed at both the ends with paraffin wax . they were incubated in an anaerobic environment for 37c . at the end of 1 , 3 , and harvesting of the dentin was carried out at 2 depths ( 200 and 400 m ) with gates glidden drills no . 4 and 5 , respectively . the collected dentin shavings were transferred into 1 ml of sterile ts broth and incubated in an anaerobic environment at 37c for 24 h. after 24 h , the contents of each tube was serially diluted , 100 l of the broth in 100 l of sterile saline for 5 times . fifty microliters of the dilution was then plated on ts agar plates and incubated for 24 h. colonies were counted and readings were tabulated as shown in table 1 . mean colony counts for different intracanal medicaments at 200 and 400 m depths at different time intervals the data were statistically analyzed with one - way analysis of variance followed by tukey multiple comparison means to check the difference in bacterial inhibition between the groups ( p < 0.05 ) . the paired t test was used to check for differences in growth at different time intervals within groups and for differences at the 2 depths ( p < 0.05 ) . a rotary diamond disk was used to decoronate the teeth 5 mm below cementoenamel junction and the apical part of the root to obtain 6 mm of the middle third of the root . 3 ( mani inc , tachigi - ken , japan ) in a slow speed handpiece was used to standardize the internal diameter of the root canals . the blocks were treated in an ultrasonic bath of 17% ethylene diamine tetra acetic acid for 5 min followed by 3% naocl for 5 min to remove the organic and inorganic debris . the traces of chemicals used were removed by immersing the blocks in an ultrasonic bath containing distilled water for 5 min . the first cycle was at 121c and the second was with the blocks immersed in 1 ml of tryptone soya ( ts ) broth in individual microcentrifuge tubes . the test organism used for this study was e. faecalis , which is a gram - positive facultative anaerobic bacterium . e. faecalis ( atcc 29212 ) was grown in ts agar for 24 h. the culture was suspended in 5 ml of ts broth and incubated for 4 h at 37c and its turbidity was adjusted to 0.5 mcfarland standard . each dentin block was placed in presterilized microcentrifuge tubes containing 1 ml of the ts broth . fifty microliters of the inoculum containing the e. faecalis was transferred into each of the microcentrifuge tubes . at the end of 24 h purity of the culture was checked by subculturing 5 l of the broth from the incubated dentin blocks in ts broth on ts agar plates . at the end of 21 days the blocks were irrigated with 5 ml of sterile saline to remove the incubation broth . group 1 : saline ( negative control ) group 2 : calcium hydroxide group 4 : m. citrifolia gel group 5 : aloe vera gel group 6 : 2% chlorhexidine gel calcium hydroxide ( sigma  aldrich , mumbai , india ) was mixed with sterile saline in a ratio of 1.5:1 ( wt / vol ) to obtain a paste - like consistency . ltd , gujarat , india . ) was used as a thickening agent in the ratio of 2:1 ( vol / wt ) for group 3 ( papain raw extract taken from fruit ) , group 4 ( m. citrifolia raw extract taken from fruit ) , group 5 ( aloe vera raw extract taken from leaf ) , and group 6 ( chlorhexidine ) . hydroxyethyl cellulose is a nonionic , highly inert , and water - soluble agent and has been used in various studies for gel formation . the medicaments were placed inside the canals and sealed at both the ends with paraffin wax . they were incubated in an anaerobic environment for 37c . at the end of 1 , 3 , and harvesting of the dentin was carried out at 2 depths ( 200 and 400 m ) with gates glidden drills no . 4 and 5 , respectively . the collected dentin shavings were transferred into 1 ml of sterile ts broth and incubated in an anaerobic environment at 37c for 24 h. after 24 h , the contents of each tube was serially diluted , 100 l of the broth in 100 l of sterile saline for 5 times . fifty microliters of the dilution was then plated on ts agar plates and incubated for 24 h. colonies were counted and readings were tabulated as shown in table 1 . mean colony counts for different intracanal medicaments at 200 and 400 m depths at different time intervals the data were statistically analyzed with one - way analysis of variance followed by tukey multiple comparison means to check the difference in bacterial inhibition between the groups ( p < 0.05 ) . the paired t test was used to check for differences in growth at different time intervals within groups and for differences at the 2 depths ( p < 0.05 ) . contamination of the dentin blocks was confirmed when debris samples harvested from the saline group ( negative control ) yielded positive growth . table 1 shows the antibacterial activity , measured at 2 depths ( 200 and 400 m ) and at 3 time intervals ( 1 , 3 , and 5 days ) . the inhibition of growth in all the groups was statistically significant in comparison to the control group ( saline ) . group 6 ( 2% chlorhexidine gel ) was the most effective against e. faecalis to the depth of 400 m on all days of incubation . intergroup comparison of inhibition between groups 4 and 5 ( m. citrifolia gel and aloe vera gel ) showed no statistical difference on day 1 , but on days 3 and 5 there was a statistically significant difference . inhibition in group 4 ( m. citrifolia gel ) was also statistically significant compared with groups 3 and 2 ( papain gel and calcium hydroxide , respectively ) on all days ( 1 , 3 , and 5 ) . inhibition in group 3 ( papain gel ) was statistically better than group 2 ( calcium hydroxide ) on day 3 , whereas on days 1 and 5 they had similar efficacy . the inhibition of growth of e. faecalis at 200 and 400 m was uniform with no statistically significant difference for all the groups . the inhibition of growth of e. faecalis at the end of days 1 , 3 , and 5 was varied with different medicaments . group 2 ( calcium hydroxide ) showed sufficient antibacterial activity on day 1 , which decreased on day 3 and again increased by day 5.group 3 ( papain gel ) showed a decrease in antibacterial activity at the end of day 5.group 4 ( m. citrifolia gel ) showed constant antimicrobial efficacy on all the days ( 1 , 3 , and 5 days).group 5 ( aloe vera gel ) showed comparable antibacterial activity to m. citrifolia gel on first day , but there was a gradual decrease in the efficacy by the end of day 5 . group 2 ( calcium hydroxide ) showed sufficient antibacterial activity on day 1 , which decreased on day 3 and again increased by day 5 . group 3 ( papain gel ) showed a decrease in antibacterial activity at the end of day 5 . group 4 ( m. citrifolia gel ) showed constant antimicrobial efficacy on all the days ( 1 , 3 , and 5 days ) . group 5 ( aloe vera gel ) showed comparable antibacterial activity to m. citrifolia gel on first day , but there was a gradual decrease in the efficacy by the end of day 5 . to summarize the results , the overall percentage inhibition at 2 depths and different time intervals was , 100% with chlorhexidine gel , 86.02% with m. citrifolia gel , 78.9% with aloe vera gel , followed by 67.3% papain gel and 64.3% with calcium hydroxide [ figure 1 ] . ( abbreviations : mc , morinda citrifolia ; chx , chlorhexidine gel ; ca(oh)2 ; calcium hydroxide ) currently , the use of natural extracts in dentistry has gained importance both to patients and endodontic professionals as the shift is toward natural health remedies . hence the use of an intracanal medicament made of natural extracts is of great significance . the use of a biocompatible intracanal medicament possessing antimicrobial properties between appointments may reduce or eliminate bacteria in the root canal system and significantly increase the success of root canal treatment . the in vitro model developed by haapasalo and rstavik has been used to assess the efficacy of endodontic medicaments in the disinfection of dentinal tubules . lynne et al . modified this model to include quantitative analysis of bacteria in the dentin tubules to define a percentage of reduction in colony forming units in infected dentin before and after the application of intracanal medication preparations . e. faecalis was chosen as the test organism because it has long been implicated in persistent root canal infections and more recently has been identified as the species most commonly recovered from root canals of teeth with post - treatment disease . this study reveals the effect of newer organic intracanal medicaments ( when used as raw extracts ) against e. faecalis . on an average , chlorhexidine gel showed maximum inhibition of e. faecalis at depths of 200 and 400 m followed by m. citrifolia gel ( 86.02% ) , and aloe vera gel ( 78.9% ) . levels of inhibition of papain ( 67.3% ) and calcium hydroxide ( 64.3% ) were somewhat comparable . in the present study , chlorhexidine gel showed 100% inhibition at depths of 200 and 400 m from day 1 to 5 . the reason could be due to the bactericidal dosage of 2% and increased diffusion of the medicament into the dentinal tubules . showed that 2% chlorhexidine gel produced a better antimicrobial action as compared to 0.2% chlorhexidine gel or calcium hydroxide mixed with 0.2% chlorhexidine . m. citrifolia gel showed 86.02% inhibition at depths of 200 and 400 m from day 1 to 5 . claim that the presence of l - asperuloside and alizarin may be responsible for the antibacterial and antimicrobial property of m. citrifolia . this improved performance could be attributed to the increased contact time and physical contact of the gel . these results are in accordance with another study conducted by wang et al . , wherein 2% chlorhexidine solution when converted into gel form performed better than the solution alone . further studies are needed to determine the optimum concentration of m. citrifolia required when used in gel form as an intracanal medicament against e. faecalis . aloe vera showed 78.72% and 80% inhibition at depths of 200 and 400 m from day 1 to 5 . first day results of aloe vera gel were comparable to that of m. citrifolia gel , but the values declined over day 3 and 5 . the possible reason for antimicrobial action of aloe vera could be the presence of 75 potentially active constituents : vitamins , enzymes , minerals , sugars , lignin , saponins , salicylic acids , and amino acids . the pharmacologic actions of aloe vera , as studied in vitro or in animals ( in most cases the total leaf extract was used ) include anti - inflammatory , antibacterial , and hypoglycemic effects . gel based on papain showed 68.05% and 67.28% inhibition at depths of 200 and 400 m from day 1 to 5 . this was probably due to proteolytic cysteine enzyme present in papain , which exhibits antibacterial and anti - inflammatory properties . calcium hydroxide showed 63.82% and 66.22% inhibition at depths of 200 and 400 m from day 1 to 5 . gomes et al . reported that e. faecalis present in the dentinal tubules were resistant to calcium hydroxide intracanal dressing over 10 days . calcium hydroxide had decreased efficacy on day 3 , but had an increased antimicrobial efficacy at day 5 . chlorhexidine gel showed the maximum antimicrobial activity against e. faecalis , whereas calcium hydroxide showed the least . among the natural intracanal medicaments , m. citrifolia gel consistently exhibited good inhibition up to the day 5 followed by aloe vera gel and papain gel .
aim : a comparative evaluation of the antimicrobial activity of natural extracts of morinda citrifolia , papain , and aloe vera ( all in gel formulations ) , 2% chlorhexidine gel and calcium hydroxide , against enterococcus faecalis  an in vitro study.materials and methods : the antimicrobial efficacy was assessed in vitro using dentin shavings collected at 2 depths of 200 and 400 m . the total colony forming units at the end of 1 , 3 , and 5 days were assessed.results:the overall percentage inhibition of bacterial growth ( 200 and 400 m depth ) was 100% with chlorhexidine gel . 
 this was followed by m. citrifolia gel ( 86.02% ) , which showed better antimicrobial efficacy as compared with aloe vera gel ( 78.9% ) , papain gel ( 67.3% ) , and calcium hydroxide ( 64.3% ) . 
 there was no statistical difference between data at 200 and 400 m depth.conclusion:chlorhexidine gel showed the maximum antimicrobial activity against e. faecalis , whereas calcium hydroxide showed the least . among the natural intracanal medicaments , 
 m. citrifolia gel consistently exhibited good inhibition up to the 5th day followed by aloe vera gel and papain gel .