This list of sequenced Deuterostomia genomes contains species for which complete genome sequences have been assembled, annotated and published.

Deuterostomia

Hemichordates 
 Saccoglossus kowalevskii, Enteropneusta (2015)
 Ptychodera flava, Enteropneusta (2015)

Echinoderms
 Acanthaster planci, starfish (2014)
 Apostichopus japonicus, sea cucumber (2017)
 Strongylocentrotus purpuratus, a sea urchin and model deuterostome (2006)

Tunicates
 Ciona intestinalis, a tunicate (2002)
 Ciona savignyi, a tunicate (2007)
 Oikopleura dioica, a larvacean (2001).

Cephalochordates
 Branchiostoma floridae, a lancelet (2008)

Cyclostomes
 Petromyzon marinus, a lamprey (2009, 2013)

Cartilaginous fish
 Callorhinchus milii, an elephant shark (2007)
 Rhincodon typus, Whale shark (2017)
 Carcharodon carcharias, Great white shark ( 2018)
 Chiloscyllium punctatum, Brownbanded bamboo shark (2018)
 Scyliorhinus torazame, Cloudy catshark (2018)

Bony fish
 Order Anabantiformes
 Betta splendens, Siamese fighting fish (2018)
 Order Beloniformes
 Oryzias latipes, medaka (2007)
 Order Centrarchiformes
 Oplegnathus fasciatus, barred knifejaw (2019) 
 Order Characiformes
 Astyanax mexicanus, Mexican tetra (2014)
 Order Cichliformes 
 Oreochromis niloticus, Nile tilapia (2019)
 Metriaclima zeb, Lake Malawi cichlid (2019)
 Order Clupeiformes
 Clupea harengus, Atlantic herring (2020)
 Coilia nasus, Japanese grenadier anchovy (2020)
 Sardina pilchardus, European sardine (2019)
 Order Coelacanthiformes
 Latimeria chalumnae, West Indian Ocean coelacanth and oldest known living lineage of Sarcopterygii (2013)
 Order Cypriniformes
 Anabarilius grahami Regan, Kanglang fish (2018)
 Danio rerio, a zebrafish (2007)
 Heterandria formosa, Least Killifish (2019)
 Oxygymnocypris stewartii,(2019)
 Megalobrama amblycephala, blunt snout bream (2017)
 Order Cyprinodontiformes
 Heterandria formosa, least killifish (2019)
 Xiphophorus maculatus, platyfish (2013)
 Nothobranchius furzeri,  turquoise killifish (2015)
 Order Esociformes
 Esox lucius, northern pike (2014)
 Order Gadiformes
 Gadus morhua, Atlantic cod (2011)
 Order Gasterosteiformes
 Gasterosteus aculeatus, three-spined stickleback (2006, 2012)
 Order Gymnotiformes
 Electrophorus electricus, electric eel (2014)
 Order Lepisosteiformes
 Lepisosteus oculatus, spotted gar
 Order Osmeriformes
 Protosalanx hyalocranius, clearhead icefish (2017)
 Order Perciformes
 Channa argus, northern snakehead (2017)
 Dissostichus mawsoni, Antarctic toothfish (2019)
 Eleginops maclovinus, Patagonian robalo (2019)
 Larimichthys crocea, large yellow croaker (2014)
 Lutjanus campechanus, Northern red snapper (2020)
 Parachaenichthys charcoti, Antarctic dragonfish (2017)
 Seriola dumerili, Greater amberjack (2017)
 Sillago sinica, chinese sillago (2018)
 Sparus aurata, gilt-head bream (2018)
 Order Salmoniformes
 Salmo salar, Atlantic salmon (2016)
 Oncorhynchus mykiss, rainbow trout (2014)
 Oncorhynchus tshawytscha, Chinook salmon (2018)
 Order Scorpaeniformes
 Sebastes schlegelii, Black rockfish (2018)
 Order Siluriformes
 Ictalurus punctatus, channel catfish (2016)
 Order Tetraodontiformes
 mola mola, ocean sunfish (2016)
 Takifugu rubripes, a puffer fish (International Fugu Genome Consortium 2002)
 Tetraodon nigroviridis, a puffer fish (2004)

Amphibians
 Ambystoma mexicanum, Axolotl (2018)
 Xenopus tropicalis, western clawed frog (2010)
 Nanorana parkeri, High Himalaya frog (2015)
 Oophaga pumilio, Strawberry poison-dart frog (2018)
 Rana [Lithobates] catesbeiana, North American bullfrog (2017) 
 Rhinella marina, Cane toad (2018)
 Vibrissaphora ailaonica, Mustache toad (2019)
 Leptobrachium leishanense, Leishan Mustache toad (2019)

Reptiles
 Order Crocodylia
 Alligator mississippiensis, American alligator (2012)
 Alligator sinensis, Chinese alligator (2013, 2014)
 Crocodylus porosus, salt water crocodile (2012)
 Gavialis gangeticus, Indian gharial (2012)
 Order Squamata
 Anolis carolinensis JBL SC #1, green anole lizard (2011)
 Dopasia gracilis, Burmese glass lizard, (2015)
 Emydocephalus ijimae, Ijima's turtle-headed sea snake, (2019)
 Eublepharis macularius, Leopard gecko (2016)
 Hydrophis melanocephalus, slender-necked sea snake, (2019)
 Laticauda colubrina, yellow-lipped sea krait, (2019)
 Laticauda laticaudata, blue-linged sea krait, (2019)
 Ophiophagus hannah, king cobra (2013)
 Pantherophis guttatus, corn snake (2014)
 Pogona vitticeps, Australian dragon lizard (2015)
 Python molurus bivittatus, Burmese python (2013)
 Salvator Merinae, tegu lizard (2018)
 Shinisaurus crocodilurus, Chinese crocodile lizard, (2017)
 Order Testudines (Chelonii)
 Chelonia mydas, green sea turtle (2013)
 Chrysemys picta bellii, western painted turtle (2013)
 Pelodiscus sinensis, soft-shelled turtle (2013)
 Platysternon megacephalum, Big-headed turtle (2019)

Birds
 Order Accipitriformes
 Haliaeetus albicilla, white-tailed eagle (2014)
 Haliaeetus leucocephalus, bald eagle (2014)
 Aegypius monachus, cinereous vulture (2015)
 Aquila chrysaetos, golden eagle (2018)
 Order Anseriformes
 Anas platyrhynchos, mallard duck (or wild duck) (2013)
 Order Apodiformes
 Chaetura pelagica, chimney swift (2014)
 Order Bucerotiformes
 Buceros rhinoceros silvestris, rhinoceros hornbill (2014)
 Order Caprimulgiformes
 Antrostomus carolinensis, chuck-will's-widow (2014)
 Order Cariamiformes
 Cariama cristata, red-legged seriema (2014)
 Order Cathartiformes
 Cathartes aura, turkey vulture (2014)
 Order Charadriiformes
 Charadrius vociferus, killdeer (2014)
 Himantopus novaezelandiae, kakī/black stilt (2019)
 Himantopus himantopus, pied stilt (2019)
 Recurvirostra avosetta, pied avocet (2019)
 Order Ciconiiformes
 Nipponia nippon, crested ibis (2014)
 Order Coliiformes
 Colius striatus, speckled mousebird (2014)
 Order Columbiformes
 Columba livia, pigeon (2014)
 Order Coraciiformes
 Merops nubicus, carmine bee-eater (2014)
 Order Cuculiformes
 Cuculus canorus, common cuckoo (2014)
 Tauraco erythrolophus, red-crested turaco (2014)
 Order Eurypygiformes
 Eurypyga helias, sunbittern (2014)
 Order Falconiformes
 Falco cherrug, saker falcon (2013)
 Falco peregrinus, peregrine falcon (2013)
 Order Galliformes
Arborophila rufipectus, Sichuan Partridge (2019)
Gallus gallus, chicken (2004)
Meleagris gallopavo, domesticated turkey (2011)
 Numida meleagris, helmeted guinea fowl (2019)
 Pavo cristatus, Indian peafowl (2018)
Phasianus colchicus, Common Pheasant (2019)
Syrmaticus mikado, mikado pheasant (2018)
Tetrao tetrix, black grouse (2014)
 Order Gaviiformes
 Gavia stellata, red-throated loon (2014)
 Order Gruiformes
 Balearica regulorum gibbericeps, grey crowned-crane (2014)
 Chlamydotis macqueenii, MacQueen's bustard (2014)
 Order Leptosomiformes
 Leptosomus discolor, cuckoo-roller (2014)
 Order Mesitornithiformes
 Mesitornis unicolor, brown mesite (2014)
 Order Opisthocomiformes
 Opisthocomus hoazin, hoatzin (2014)
 Order Passeriformes
 Acanthisitta chloris, rifleman (2014)
 Corvus brachyrhynchos, American crow (2014)
 Corvus hawaiiensis, Hawaiian crow (2018)
 Eopsaltria australis, Eastern yellow robin (2019)
 Ficedula albicollis, collared flycatcher (2012)
 Ficedula hypoleuca, pied flycatcher (2012)
 Geospiza fortis, medium ground-finch (2014)
 Hirundo rustica, barn swallow (2018)
 Lonchura striata domestica, Society finch (2018)
 Manacus vitellinus, golden-collared manakin (2014)
 Lycocorax pyrrhopterus, Paradise-crow (2019)
 Manacus vitellinus, golden-collared manakin (2014)
 Paradisaea rubra, red bird-of-paradise (2019)
 Pteridophora alberti, king of saxony bird-of-paradise (2019)
 Ptiloris paradiseus, paradise riflebird (2019)
 Taeniopygia guttata, zebra finch (2010)
 Order Pelecaniformes
 Egretta garzetta, little egret (2014)
 Pelecanus crispus, Dalmatian pelican (2014)
 Order Phaethontiformes
 Phaethon lepturus, white-tailed tropicbird (2014)
 Order Phoenicopteriformes
 Phoenicopterus ruber ruber, American flamingo (2014)
 Order Piciformes
 Picoides pubescens, downy woodpecker (2014)
 Order Podicipediformes
 Podiceps cristatus, great crested grebe (2014)
 Order Procellariiformes
 Fulmarus glacialis, northern fulmar (2014)
 Order Pterocliformes
 Pterocles gutturalis, yellow-throated sandgrouse (2014)
 Order Psittaciformes
 Amazona leucocephala, Cuban amazon (2019)
 Amazona ventralis, Hispaniolan amanzon (2019)
 Amazona vittata, Puerto Rican parrot (2012)
 Ara macao, Scarlet macaw (2013)
 Cyanoramphus malherbi, kākāriki karaka (2020)
 Melopsittacus undulatus, budgerigar (2014)
 Nestor notabilis, kea (2014)
 Order Struthioniformes
 Struthio camelus australis, common ostrich (2014)
 Order Sphenisciformes
 Aptenodytes forsteri, emperor penguin (2014)
Aptenodytes patagonicus, king penguin (2019)
Eudyptes chrysocome, Western rockhopper penguin (2019) 
Eudyptes chrysolophus chrysolophus,  Macaroni penguin (2019) 
Eudyptes chrysolophus schlegeli, Royal penguin (2019) 
Eudyptes filholi, Eastern rockhopper penguin (2019) 
Eudyptes moseleyi, Northern rockhopper penguin (2019) 
Eudyptes pachyrhynchus, Fiordland-crested penguin (2019) 
Eudyptes robustus, Snares-crested penguin (2019) 
Eudyptes sclateri, Erect-crested penguin (2019) 
Eudyptula minor albosignata, white-flippered penguin (2019) 
Eudyptula minor minor, little blue penguin (2019) 
Eudyptula novaehollandiae, fairy penguin (2019)
Megadyptes antipodes antipodes, yellow eyed penguin or hoiho (2019) 
Pygoscelis adeliae, Adélie penguin (2014)
Pygoscelis antarctica, chinstrap penguin (2019)
Pygoscelis papua, gentoo penguin (2019)
Spheniscus demersus, African penguin (2019) 
Spheniscus humboldti, Humboldt penguin (2019) 
Spheniscus magellanicus, Magellanic penguin (2019) 
Spheniscus mendiculus, Galápagos penguin (2019) 
 Order Strigiformes
 Tyto alba, barn owl (2014)
 Strix occidentalis caurina, northern spotted owl (2017)
 Strix varia, Barred owl (2017)
 Order Suliformes
 Phalacrocorax auritus, double-crested cormorant (2017)
 Phalacrocorax brasilianus, Neotropic cormorant (2017)
 Phalacrocorax carbo, great cormorant (2014)
 Phalacrocorax harrisi, Galapagos cormorant (2017)
 Phalacrocorax pelagicus, pelagic cormorant (2017)
 Order Tinamiformes
 Tinamus guttatus, white-throated tinamou (2014)
 Order Trochiliformes
 Calypte anna, Anna's hummingbird (2014)
 Order Trogoniformes
 Apaloderma vittatum, bar-tailed trogon (2014)

Mammals
 Subclass Prototheria, Order Monotremata, Family Ornithorhynchidae
 Ornithorhynchus anatinus, platypus (2007)
 Subclass Theria (marsupials and placental mammals)
 Infraclass Metatheria (marsupials)
 Order Didelphimorphia, Family Didelphidae (opossums)
 Monodelphis domestica, gray short-tailed opossum (2007)
 Order Dasyuromorphia
 Family Dasyuridae
 Sarcophilus harrisii, Tasmanian devil ()
 Family Thylacinidae
 Thylacinus cynocephalus, thylacine ()
 Order Diprotodontia
 Family Macropodidae
 Macropus eugenii, tammar wallaby (2011)
 Family Phascolarctidae
 Phascolarctos cinereus, koala (2013 draft)
 
 Infraclass Eutheria (placental mammals)

 Order Erinaceomorpha, Family Erinaceidae
 Erinaceus europaeus, European hedgehog 
 Order Eulipotyphla, Family Solenodontidae
Solenodon Parodoxus, Hispaniolan solenodon (2018)
Order Chiroptera
 Family Megadermatidae
 Megaderma lyra, greater false vampire bat (2013)
 Family Mormoopidae
 Pteronotus parnellii, Parnell's mustached bat (2013)
 Family Pteropodidae
 Pteropus vampyrus, fruit bat (2012)
 Eidolon helvum, Old World fruit bat (2013)
 Family Rhinolophidae
 Rhinolophus ferrumequinum, greater horseshoe bat (2013)
 Family Vespertilionidae
 Myotis lucifugus, little brown bat (2010)
 Family Phyllostomidae
Leptonycteris yerbabuenae, long nosed bat (2020)
 Leptonycteris nivalis, greater long nosed bat (2020)
 Musonycteris harrisoni, banana bat (2020)
 Artibeus jamaicensis, Jamaican fruit bat (2020)
 Macrotus waterhousii, Waterhouse's leaf-nosed bat (2020)
 Order Primates
 Family Galagidae
 Otolemur garnettii, small-eared galago, or bushbaby ()

 Family Cercopithecidae
 Macaca mulatta, rhesus macaque (2007 & Chinese rhesus macaque Macaca mulatta lasiota in 2011)
 Macaca fascicularis, Cynomolgus or crab-eating macaque (2011)
 Rhinopithecus roxellana, golden snub-nosed monkey (2019)
 Family Hominidae
 Subfamily Ponginae
 Pongo pygmaeus/Pongo abelii, orangutan (Borneo/Sumatra) (2011)
 Subfamily Homininae
 Gorilla gorilla, western gorilla (2012)
 Homo sapiens, modern human (draft 2001 91%-96% complete)
 Homo neanderthalensis, Neanderthal (draft 2010)
 Pan troglodytes, chimpanzee (2005)
 Pan paniscus, bonobo (2012)

 Family Callitrichidae
 Callithrix jacchus, marmoset (2010, whole genome 2014)
 Order Carnivora
 Family Felidae
 Acinonyx jubatus, African cheetah (2015)
 Felis silvestris catus, cat (2007)
 Panthera leo, lion (2013)
 Panthera pardus, Amur leopard (2016)
 Panthera tigris altaica, Amur tiger (or Siberian tiger) (2013)
 Panthera tigris tigris, Bengal tiger (2013
 Panthera uncia, snow leopard (2013)
 Prionailurus bengalensis, leopard cat (2016)
 Family Canidae
 Canis lupus familiaris, dog (2005)
 Canis lupus lupus, wolf (2017).
 Lycaon pictus, african wild dog (2018)
 Family Ursidae
 Ailuropoda melanoleuca, giant panda (2010)
 Ursus arctos ssp. horribilis, Grizzly bear (2018)
 Ursus americanus, American black bear (2019)
 Ursus maritimus, Polar bear (2014)
 Family Odobenidae
 Odobenus rosmarus, walrus (2015)
 Family Mustelidae
 Enhydra lutris kenyoni, sea otter (2017)
 Mustela erminea, stoat (2018)
 Mustela putorius furo, ferret (2014)
 Pteronura brasiliensis, giant otter (2019)
 Order Cetacea
 Family Delphinidae
 Tursiops truncatus, bottlenosed dolphin (2012)
 Balaenoptera acutorostrata, common minke whale (2014)
 Balaenoptera physalus, fin whale (2014)
 Neophocaena phocaenoides, finless porpoise (2014)
 Orcinus orca, killer whale (2015)
 Sousa Chinensis, Indo-Pacific humpback dolphin (2019)
 Family Monodontidae
 Delphinapterus, beluga whale (2017)
 Family Physeteridae
 Physeter macrocephalus, sperm whale (2019)
 Order Proboscidea, Family Elephantidae
 Elephas maximus, Asian elephant (2015)
 Loxodonta africana, African elephant (2009)
 Order Sirenia (sea cows)
 Family Trichechidae
 Trichechus manatus, West Indian manatee (2015)
 Order Perissodactyla (odd-toed ungulates), Family Equidae
 Equus ferus caballus, horse (2009 2018)
 Order Artiodactyla (even-toed ungulates)
 Family Antilocapridae
 Antilocapra americana, Pronghorn (2019)
 Family Suidae
 Sus scrofa, pig (2012)
 Family Bovidae
 Ammotragus lervia, Barbary sheep (2019)
 Antidorcas marsupialis, Springbox (2019)
 Bison bonasus, European bison (2017)
 Bos grunniens, yak 2012 ()
 Bos primigenius indicus, zebu or Brahman cattle (2012)
 Bos primigenius taurus, cow 2009 ()
 Bubalus bubalis, river buffalo (2017)
 Capra ibex, Goats (2019)
 Cephalophus harveyi, Harvey's duiker (2019)
 Connochaetes taurinus, blue wildebeest (2019)
 Damaliscus lunatus, common tsessebe (2019)
 Gazella thomsoni, Thomson's gazelle (2019)
 Hippotragus niger, Sable Antelope (2019)
 Kobus ellipsiprymnus, Waterbuck (2019)
 Litocranius walleri, Gerenuk (2019)
 Oreotragus oreotragus, Klipspringer (2019)
 Oryx gazella, Gemsbok (2019)
 Ourebia ourebi, Oribi (2019)
 Ovis ammon, Argali (2019)
 Ovis ammon polii, marco polo sheep (2017)
 Nanger granti, Grant's gazelle (2019)
 Neotragus moschatus, Suni (2019)
 Neotragus pygmaeus, Royal antelope (2019)
 Philantomba maxwellii, Maxwell's duiker (2019)
 Procapra przewalskii, Przewalski's gazelle (2019)
 Pseudois nayaur, Bharal (2019)
 Raphicerus campestris, Steenbox (2019)
 Redunca redunca, Bohor reedbuck (2019)
 Syncerus caffer, African buffalo (2019)
 Sylvicapra grimmia, common duiker (2019)
 Tragelaphus, Spiral-horned bovine (2019)
 Tragelaphus buxtoni, Mountain nyala (2019)
 Tragelaphus strepsiceros, Greater kudu (2019)
 Tragelaphus imberbis, Lesser kudu (2019)
 Tragelaphus spekii, Sitatunga (2019)
 Tragelaphus scriptus, Bushbuck (2019)
 Taurotragus oryx, Common eland (2019)
 Family Cervidae
 Cervus albirostris, Tharold's deer (2019)
 Elaphurus davidianus, Père David's deer  (2018)
 Muntiacus crinifrons, hairy-fronted muntjac (2019)
 Muntiacus muntjak, Indian muntjac (2019)
 Muntiacus reevesi, Reeves's muntjac (2019)
 Rangifer Tarandus, Reindeer (2017)
 Family Giraffidae
 Giraffa camelopardalis, Giraffe (2019)
 Giraffa camelopardalis tippelskirchi, Masai giraffe (2019)
 Okapia johnstoni, Okapi (2019)
 Family Moschidae
 Moschus berezovskii, forest musk deer (2018)
 Moschus chrysogaster, Alpine musk deer (2019)
 Family Tragulidae
 Tragulus javanicus, Java mouse-deer (2019)
 Order Rodentia

 Family Caviidae
 Hydrochoerus hydrochaeris, capybara (2018)
 Family Cricetidae
 Peromyscus leucopus, white-footed mouse (2019)
 Family Muridae
 Mastomys coucha, Southern multimammate mouse (2019) 
 Mus musculus Strain: C57BL/6J, mouse (2002)
 Rattus norvegicus, rat (2004)

 Order Lagomorpha
 Family Leporidae
 Oryctolagus cuniculus, European rabbit (2010)

References

Biology-related lists