This list of sequenced animal genomes contains animal species for which complete genome sequences have been assembled, annotated, and published.

Porifera
 Amphimedon queenslandica, a sponge (2009)
 Stylissa carteri (2016)
 Xestospongia testudinaria (2016)

Ctenophora
 Mnemiopsis leidyi (Ctenophora), (order Lobata) (2012)/2013
 Pleurobrachia bachei (Ctenophora) (2014)

Placozoa
 Trichoplax adhaerens, a Placozoan (2008)
 Hoilungia hongkongensis, nov. gen H13 Placozoan (2018)

Cnidaria
 Hydra vulgaris, (previously Hydra magnipapillata), a model hydrozoan (2010)
 Nematostella vectensis, a model anemone (starlet sea anemone) (2007)
 Aiptasia pallida, a sea anemone (2015)
 Acropora digitifera, a coral  (2011)
 Renilla muelleri, an octocoral (2017, 2019)
 Stylophora pistillata, a coral  (2017)
 Aurelia aurita, moon jellyfish (2019)
 Clytia hemisphaerica, Hydrozoa jellyfish (2019)
 Pocillopora damicornis, cauliflower coral (2018)
 Nemopilema nomurai, Nomura's jellyfish (2019)
 Rhopilema esculentum, flame jellyfish (2020)
 Cassiopea xamachana (Scyphozoa) (2019)
 Alatina alata (Cubozoa) (2019)
 Calvadosia cruxmelitensis (Staurozoa) (2019)
 Dendronephthya gigantea, an octocoral (2019)

Deuterostomia

see: List of sequenced Deuterostomia genomes

Protostomia

Insects
 Order Blattodea
 Blattella germanica, German cockroach (2018)
 Periplaneta americana, American cockroach (2018)
 Zootermopsis nevadensis, a dampwood termite (2014)
 Cryptotermes secundus, a drywood termite(2018)
 Macrotermes natalensis, a higher termite (2014)
 Order Coleoptera
 Dendroctonus ponderosae Hopkins, beetle (mountain pine beetle) (2013)
 Aquatica lateralis, Japanese aquatic firefly "Heike-botaru" (firefly) (2018)
 Photinus pyralis, big dipper firefly (2018)
 Protaetia brevitarsis, White-spotted flower chafer (2019)
 Tribolium castaneum Strain:GA-2, beetle (red flour beetle) (2008)
 Order Diptera
 Family Calliphoridae
 Aldrichina grahami, forensic blowfly (2020)
 Family Chironomidae
 Dasypogon diadema, hunting robber fly (2019)
 Parochlus steinend, Antarctic winged midge (2017)
 Proctacanthus coquilletti, assassin fly (2017)
 Family Culicidae (mosquitoes)
 Aedes aegypti Strain:LVPib12, mosquito (vector of dengue fever etc) (2007)
 Aedes albopictus (2015)
 Anopheles darlingi
 Anopheles gambiae Strain: PEST, mosquito (vector of malaria) (2002)
 Anopheles gambiae Strain: M, mosquito (vector of malaria) (2010)
 Anopheles gambiae Strain: S, mosquito (vector of malaria) (2010)
 Anopheles sinensis, mosquito (vector of vivax malaria, lympahtic filariasis and Setaria infections), (2014)
 Anopheles stephensii
 Anopheles arabiensis (2015)
 Anopheles quadriannulatus (2015)
 Anopheles merus (2015)
 Anopheles melas (2015)
 Anopheles christyi (2015)
 Anopheles epiroticus (2015)
 Anopheles maculatus (2015)
 Anopheles culicifacies (2015)
 Anopheles minimus (2015)
 Anopheles funestus (2019)
 Anopheles dirus (2015)
 Anopheles farauti (2015)
 Anopheles atroparvus (2015)
 Anopheles sinensis (2015)
 Anopheles albimanus (2015)
 Culex quinquefasciatus, mosquito (vector of West Nile virus, filariasis etc) (2010)
 Family Drosophilidae (fruit flies)
 Drosophila albomicans, fruit fly (2012)
 Drosophila ananassae, fruit fly (2007)
 Drosophila biarmipes, fruit fly (2011)
 Drosophila bipectinata, fruit fly (2011)
 Drosophila erecta, fruit fly (2007)
 Drosophila elegans, fruit fly (2011))
 Drosophila eugracilis, fruit fly (2011)
 Drosophila ficusphila, fruit fly (2011)
 Drosophila grimshawi, fruit fly (2007)
 Drosophila kikkawai, fruit fly (2011)
 Drosophila melanogaster, fruit fly (model organism) (2000)
 Drosophila mojavensis, fruit fly (2007)
 Drosophila neotestacea, fruit fly (transcriptome 2014)
 Drosophila persimilis, fruit fly (2007)
 Drosophila pseudoobscura, fruit fly (2005)
 Drosophila rhopaloa, fruit fly (2011)
 Drosophila santomea, fruit fly (2018)
 Drosophila sechellia, fruit fly (2008)
 Drosophila simulans, fruit fly (2007)
 Drosophila takahashi, fruit fly (2011)
 Drosophila virilis, fruit fly (2007)
 Drosophila willistoni, fruit fly (2007)
 Drosophila yakuba, fruit fly (2007)
 Family Phoridae
 Megaselia abdita, scuttle fly (transcriptome (2013)
 Family Psychodidae (drain flies)
 Clogmia albipunctata, moth midge (transcriptome (2013)
 Family Sarcophagidae (flesh flies)
 Sarcophaga bullata, Flesh fly (2019)
 Family Syrphidae (hoverflies)
 Episyrphus balteatus, hoverfly transcriptome (2011)
 Order Hemiptera
 Acyrthosiphon pisum, aphid (pea aphid) (2010)
 Ericerus pela, Chinese wax scale insect (2019)
 Laodelphax striatellus, small brown planthopper (2017)
 Lycorma delicatula, spotted lanternfly (2019)
 Rhodnius prolixus, kissing-bug (2015)
 Rhopalosiphum maidis, Corn leaf aphid (2019)
 Sitobion miscanthi, Indian grain aphid (2019)
 Triatoma rubrofasciata, assassin bug (2019)
 Order Hymenoptera
 Acromyrmex echinatior colony Ae372, ant (Panamanian leafcutter) (2011))
 Apis mellifera, bee (honey bee), (model for eusocial behavior) (2006
 Atta cephalotes, ant (leaf-cutter ant) (2011)
 Camponotus floridanus, ant (2010)
 Cerapachys biroi, ant (clonal raider ant)(2014)
 Harpegnathos saltator, ant (2010)
 Lasius niger, ant (black garden ant)(2017)
 Linepithema humile, ant (Argentine ant) (2011)
 Nasonia giraulti, wasp (parasitoid wasp) (2010)
 Nasonia longicornis, wasp (parasitoid wasp) (2010)
 Nasonia vitripennis, wasp (parasitoid wasp; model organism) (2010)
 Nomia Melanderi, Alkali bee (2019)
 Pogonomyrmex barbatus, ant (red harvester ant) (2011)
 Solenopsis invicta, ant (fire ant) (2011)
 Order Lepidoptera
 Antharaea yamamai, Japanese oak silk moth (2019)
 Bicyclus anynana, squinting bush brown (2017)
 Bombyx mori Strain:p50T, moth (domestic silk worm) (2004)
 Cydia pomonella, codling moth (2019)
 Danaus plexippus, butterfly (monarch butterfly) (2011)
 Heliconius melpomene, butterfly (2012)
 Melitaea cinxia, Glanville fritillary butterfly (2014)
 Megathymus ursus violae, bear giant skipper butterfly (2018)
 Papilio bianor, Chinese peacock butterfly (2019)
 Pieris rapae, small cabbage white butterfly (2016)
 Plutella xylostella, moth (diamondback moth) (2013)
 Spodoptera frugiperda, Fall armyworm (2017)
 Eudocima phalonia, fruit-piercing moth (2017)
 Order Orthoptera
 Locusta migratoria, migratory locust (2014)
 Schistocerca gregaria, desert locust (2020)
 Order Phthiraptera
 Pediculus humanus, louse (sucking louse; parasite) (2010)
 Order Trichoptera
 Stenopsyche tienmushanensis, Caddisfly (2018)

Crustaceans
 Acartia tonsa dana, cosmopolitan calanoid copepod (2019) 
 Daphnia pulex, water flea (2007)
 Eulimnadia texana, Clam Shrimp (2018)
 Neocaridina denticulata, shrimp (2014)
 Parhyale hawaiensis, amphipod (2016)
 Portunus trituberculatus, swimming crab (2020)
 Procambarus virginalis, marbled crayfish (2018)
 Tigriopus kingsejongensis, antarctic-endemic copepod (2017)

Chelicerates
 Limulus polyphemus, Atlantic horseshoe crab (2014)
 Carcinoscorpius rotundicauda, mangrove horseshoe crab (2020)

Of which Arachnids:
 Acanthoscurria geniculata, Brazilian whiteknee tarantula (2014)
 Dysdera silvatica, Canary Island nocturnal endemic woodlouse spider (2019)
 Ixodes scapularis, (deer tick) (2016)
 Mesobuthus martensii, Chinese scorpion (2013)
 Nephila clavipes, (golden silk orb-weaver) (2017)
 Parasteatoda tepidariorum, (common house spider) (2017)
 Stegodyphus mimosarum, African social velvet spider (2014)
 Tetranychus urticae, spider mite (2011)
 Tropilaelaps mercedesae, (honeybee mite) (2017)

Myriapoda
 Strigamia maritima, centipede

Tardigrades
 Hypsibius dujardini, water bear (2015)

Molluscs
 Achatina fulica, giant African snail (2019)
 Architeuthis dux, giant squid (2020)
 Argopecten purpuratus, peruvian scallop (2018)
 Bathymodiolus platifrons, seep mussel (2017
 Biomphalaria glabrata, a medically-important air-breathing freshwater snail in the family Planorbidae (2017)
 Chlamys farreri, Zhikong scallop (2017)
 Crassostrea gigas, Pacific oyster (2012)
 Dreissena rostriformis, Quagga mussel (2019)
 Euprymna scolopes, Hawaiian bobtail squid (2019)
 Elysia chlorotica, a solar-powered sea slug (2019)
 Haliotis discus hannai, pacific abalone (2017)
 Lottia gigantea, owl limpet (2013)
 Limnoperna fortunei, invasive golden mussel (2017)
 Modiolus philippinarum, shallow water mussel (2017)
 Mytilus galloprovincialis, Mediterranean mussel (2016)
 Octopus bimaculoides, California two-spot octopus (2015)
 Octopus minor, common long-arm octopus (2018
 Octopus vulgaris, common octopus (2019)
 Patinopecten yessoensis, Yesso scallop (2017)
 Pecten maximus, Great scallop (2020)
 Pinctada fucata, Pearl oyster (2012)
 Pomacea canaliculata, golden apple snail (2018)
 Ruditapes philippinarum, Manila clam (2017)
 Saccostrea glomerata, Sydney rock oyster (2018)
 Scapharca broughtonii, Blood clam (2019)
 Venustaconcha ellipsiformis, freshwater mussel (2018)

Platyhelminthes
 Clonorchis sinensis, liver fluke (human pathogen) (draft 2011)
 Echinococcus granulosus, tapeworm (dog pathogen) (2013, 2013)
 Echinococcus multilocularis, tapeworm (2013)
 Hymenolepis microstoma, tapeworm (2013)
 Limnoperna fortunei, golden mussel (2017)
 Schistosoma haematobium, schistosome (human pathogen) (2012 2019)
 Schistosoma japonicum, schistosome (human pathogen) (2009)
 Schistosoma mansoni, schistosome (human pathogen) (2009, 2012)
 Schmidtea mediterranea, planarian (model organism) (2006)
 Taenia solium, tapeworm (2013)

Nematodes
 Ancylostoma ceylanicum, zoonotic hookworm infecting both humans and other mammals (2015)
 Ascaris suum, pig-infecting giant roundworm, closely related to human-infecting giant roundworm Ascaris lumbricoides (2011)
 Brugia malayi (Strain:TRS), human-infecting filarial parasite (2007)
 Bursaphelenchus xylophilus, infects pine trees (2011)
 Caenorhabditis angaria (Strain:PS1010) (2010)
 Caenorhabditis brenneri, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
 Caenorhabditis briggsae (2003)
 Caenorhabditis elegans (Strain:Bristol N2), model organism (1998)
 Caenorhabditis remanei, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
 Dirofilaria immitis, dog-infecting filarial parasite (2012)
 Globodera pallida, plant pathogen (2014)
 Haemonchus contortus, blood-feeding parasite infecting sheep and goats (2013)
 Heterodera glycines, soybean cyst nematode (2019)
 Heterorhabditis bacteriophora, (2013)
 Loa loa, human-infecting filarial parasite (2013)
 Meloidogyne hapla, northern root-knot nematode (plant pathogen) (2008)
 Meloidogyne incognita, southern root-knot nematode (plant pathogen) (2008)
 Necator americanus, human-infecting hookworm (2014)
 Onchocerca volvulus, human-infecting filarial parasite
 Pristionchus pacificus, model invertebrate (2008)
 Romanomermis culicivorax, entomopathogenic nematode that invades larvae of various mosquito species (2013)
 Schistosoma haematobium, urinary blood fluke infecting humans (2019)
 Trichuris suis, pig-infecting whipworm (2014)
 Trichuris muris, mouse-infecting whipworm (2014)
 Trichuris trichiura, human-infecting whipworm (2014)
 Wuchereria bancrofti, human-infecting filarial parasite

Annelids
 Capitella teleta, polychaete (2007, 2013)
 Helobdella robusta, leech (2007, 2013)
 Eisenia fetida, earthworm (2015, 2016)

Brachiopoda
 Lingula anatina, brachiopod (2015,)

Rotifera
 Adineta vaga, rotifer (2013,)

Ctenophora
 Mnemiopsis leidyi (Ctenophora), (order Lobata) (2012/2013)
 Pleurobrachia bachei (Ctenophora) (2014)

Placozoa
 Trichoplax adhaerens, a Placozoan (2008)
 Hoilungia hongkongensis, nov. gen H13 Placozoan (2018)

References

Biology-related lists