Repository: atomwalk12/PPS-22-git-insp
Pull request #20: feat(docs): enhance documentation and CI/CD setup for Sprint 1
Author: login: rfvasile
Created: 2025-03-25T18:47:54Z | Merged: 2025-03-26T07:03:35Z

- Added Codecov badge to README for visibility of code coverage.
- Created GitHub Actions workflow for automated testing and coverage reporting.
- Updated sprint documentation to reflect project infrastructure setup, including CI/CD pipelines and documentation systems.
- Improved daily updates with detailed summaries of progress and achievements for Sprint 1.
- Restructured documentation for better organization and clarity.


Diff:
diff --git a/.github/workflows/BuildAndTest.yml b/.github/workflows/BuildAndTest.yml
index f195ceb..8083222 100644
--- a/.github/workflows/BuildAndTest.yml
+++ b/.github/workflows/BuildAndTest.yml
@@ -1,4 +1,4 @@
-name: Build and Test
+name: Code CI
 on:
   push:
     branches-ignore:
diff --git a/.github/workflows/gh-pages.yml b/.github/workflows/gh-pages.yml
index 67427ee..c85dcdc 100644
--- a/.github/workflows/gh-pages.yml
+++ b/.github/workflows/gh-pages.yml
@@ -37,7 +37,6 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
         with:
-          ref: main
           submodules: recursive
 
       - name: Set up JDK 21
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index cc20f81..40cbe8a 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -1,4 +1,4 @@
-name: Test workflow
+name: Deploy to Codecov
 
 permissions:
   contents: read
diff --git a/README.md b/README.md
index 62e1964..d2826e9 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,7 @@
 [![Code CI](https://github.com/DiamondLightSource/pytac/actions/workflows/code.yml/badge.svg)](https://github.com/DiamondLightSource/pytac/actions/workflows/code.yml)
 [![Docs CI](https://github.com/atomwalk12/PPS-22-git-insp/actions/workflows/gh-pages.yml/badge.svg)](https://github.com/atomwalk12/PPS-22-git-insp/actions/workflows/gh-pages.yml)
 [![codecov](https://codecov.io/gh/atomwalk12/pps-22-git-insp/branch/main/graph/badge.svg)](https://codecov.io/gh/atomwalk12/pps-22-git-insp)
+[![release](https://img.shields.io/github/v/tag/atomwalk12/pps-22-git-insp.svg?label=release)](https://github.com/atomwalk12/pps-22-git-insp/releases)
 
 # Git Inspector
 
diff --git a/codecov.yml b/codecov.yml
new file mode 100644
index 0000000..c455d36
--- /dev/null
+++ b/codecov.yml
@@ -0,0 +1,17 @@
+# Check https://docs.codecov.com/docs/common-recipe-list
+coverage:
+  status:
+    project: #add everything under here, more options at https://docs.codecov.com/docs/commit-status
+      default:
+        # basic
+        target: auto #default
+        threshold: 0%
+        base: auto
+
+comment: #this is a top-level key
+  layout: " diff, flags, files"
+  behavior: default
+  require_changes: false # if true: only post the comment if coverage changes
+  require_base: false # [true :: must have a base report to post]
+  require_head: true # [true :: must have a head report to post]
+  hide_project_coverage: false # [true :: only show coverage on the git diff aka patch coverage]]
diff --git a/docs/content/process/sprint1/daily_updates/2025-03-24.md b/docs/content/process/sprint1/daily_updates/2025-03-24.md
index f25fc48..38d3257 100644
--- a/docs/content/process/sprint1/daily_updates/2025-03-24.md
+++ b/docs/content/process/sprint1/daily_updates/2025-03-24.md
@@ -1,14 +1,14 @@
 ---
-title: "Day 1 Update"
+title: "Sprint 1 - Day 1: Project Foundation"
 author: "Razvan"
-date: "2025-03-24"
-description: "Project initialization and basic setup"
-aliases: ["sprint1"]
-tags: ["sprint1", "daily_updates"]
+date: 2025-03-24
+description: "Initial project setup including build configuration, development tools, and testing infrastructure"
+aliases: ["sprint1-day1", "project-init"]
+tags: ["sprint1", "daily-updates", "project-setup", "testing", "git-workflow", "logging"]
 ShowBreadCrumbs: true
 ShowToc: true
-weight: 1
-summary: "The first day of the project focused on setting up the project infrastructure, including Github Workflows with CI/CD pipelines."
+weight: 4
+summary: "Set up the foundational project infrastructure including Scala project structure, development tools (Scalafmt, Wartremover, Scalafix), testing framework (ScalaTest, Scoverage), Git workflow enhancements, and logging system."
 ---
 
 ## Completed Tasks
diff --git a/docs/content/process/sprint1/daily_updates/2025-03-25.md b/docs/content/process/sprint1/daily_updates/2025-03-25.md
new file mode 100644
index 0000000..27802a7
--- /dev/null
+++ b/docs/content/process/sprint1/daily_updates/2025-03-25.md
@@ -0,0 +1,46 @@
+---
+title: "Sprint 1 - Day 2: Infrastructure Setup"
+author: "Razvan"
+date: 2025-03-25
+description: "Setting up project infrastructure, CI/CD pipelines, and documentation systems"
+aliases: ["sprint1-day2"]
+tags: ["sprint1", "daily-updates", "ci-cd", "documentation"]
+ShowBreadCrumbs: true
+ShowToc: true
+weight: 5
+summary: "First day focused on establishing development infrastructure including GitHub Actions workflows, Codecov integration, and documentation pipelines using Hugo and ScalaDoc."
+---
+
+## Overview
+
+The first day was dedicated to establishing a robust development infrastructure, focusing on continuous integration and documentation pipelines.
+
+## Key Achievements
+
+### CI/CD Setup
+- Implemented Scala test workflow with coverage reporting
+- Integrated Codecov for tracking code coverage metrics
+- Added Codecov badge to README for visibility
+- Updated GitHub Actions to use Ubuntu 22.04 for improved performance
+
+### Documentation Infrastructure
+- Restructured documentation system
+- Set up Hugo-based documentation site
+- Configured ScalaDoc and Scoverage report integration
+- Established proper file organization for development process documentation
+- Created initial sprint documentation structure
+
+### Workflow Improvements
+- Enhanced concurrency settings in GitHub Actions to prevent deployment conflicts
+- Streamlined documentation deployment process
+- Renamed workflows for better clarity (e.g., "Docs CI")
+
+## Technical Details
+- Updated ScalaDoc and Scoverage report paths to align with new documentation structure
+- Configured secure access for Codecov integration using tokens
+- Optimized GitHub Pages deployment workflow
+
+## Next Steps
+- Begin implementation of core functionality
+- Continue expanding test coverage
+- Further enhance documentation with project details
diff --git a/docs/content/process/sprint1/overview.md b/docs/content/process/sprint1/overview.md
index 24041f1..db76186 100644
--- a/docs/content/process/sprint1/overview.md
+++ b/docs/content/process/sprint1/overview.md
@@ -1,15 +1,15 @@
 ---
+title: "Sprint 1 Overview: Project Infrastructure Setup"
 author: "Razvan"
-title: "Overview"
-date: "2025-03-24"
-description: "Detailed description of the first sprint."
-aliases: ["sprint1"]
+date: 2025-03-24
+description: "First sprint focusing on establishing project foundations, development environment, and CI/CD pipelines"
+aliases: ["sprint1", "sprint1-overview", "infrastructure-sprint"]
+tags: ["sprint1", "overview", "project-setup", "ci-cd", "infrastructure"]
 ShowToc: true
 TocOpen: true
-tags: ["sprint1", "overview"]
 weight: 1
 ShowBreadCrumbs: true
-summary: "Detailed description of the first sprint."
+summary: "First sprint (March 24-30, 2025) dedicated to setting up the project's foundational infrastructure, including Scala 3 environment, development tools, automated checks, testing framework, and CI/CD pipeline."
 ---
 
 
diff --git a/docs/content/process/sprint1/sprint_backlog.md b/docs/content/process/sprint1/sprint_backlog.md
index 6255f9a..6d3f98d 100644
--- a/docs/content/process/sprint1/sprint_backlog.md
+++ b/docs/content/process/sprint1/sprint_backlog.md
@@ -1,14 +1,14 @@
 ---
+title: "Sprint 1 Backlog: Infrastructure Tasks"
 author: "Razvan"
-title: "Backlog"
-date: "2025-03-24"
-description: "Detailed description of the first sprint."
-aliases: ["sprint1"]
+date: 2025-03-24
+description: "Detailed breakdown of tasks and user stories for Sprint 1's infrastructure setup phase"
+aliases: ["sprint1-backlog", "infrastructure-tasks", "sprint1-tasks"]
 ShowToc: true
-tags: ["sprint1", "backlog"]
+tags: ["sprint1", "backlog", "project-setup", "planning", "infrastructure"]
 weight: 2
 ShowBreadCrumbs: true
-summary: "The tasks that were completed during the first sprint."
+summary: "Comprehensive list of tasks and deliverables for Sprint 1 (March 24-30, 2025), focusing on establishing project infrastructure, development environment, and CI/CD pipeline setup."
 ---
 
 
@@ -35,11 +35,11 @@ summary: "The tasks that were completed during the first sprint."
 - [x] Configure assembly plugin for JAR creation
 - [x] Set up test environment with ScalaTest
 - [x] Configure memory settings for tests
-- [ ] Enable code coverage with Scoverage and build online report ([Coveralls](https://github.com/scoverage/sbt-coveralls))
-- [ ] Automatic documentation generation from code comments
+- [x] Enable code coverage with Codecov and build online report ([Codecov](https://app.codecov.io/gh/atomwalk12/pps-22-git-insp))
+- [x] Automatic documentation generation from code comments
 - [ ] Configure [Dependabot](https://docs.github.com/en/code-security/dependabot/working-with-dependabot/automating-dependabot-with-github-actions) for dependency security updates
-- [X] Set up website that showcases the process and project architecture
-- [ ] Code quality badges
+- [x] Set up website that showcases the process and project architecture
+- [x] Code quality badges
 
 #### Code Quality Tools (3 story points)
 - [x] Set up Scalafmt for code formatting
@@ -71,7 +71,7 @@ summary: "The tasks that were completed during the first sprint."
   - Set up GitHub Actions workflow
   - Configure automated releases
   - Set up artifact publishing
-- [ ] Think about how the project architecture should look like
+- [ ] Define the high-level project architecture and component interactions
 
 
 #### Core Domain Model (1 day)
@@ -90,6 +90,5 @@ summary: "The tasks that were completed during the first sprint."
 
 #### Documentation and Process (1 day)
 - [X] Document the development process
-- [ ] Create initial architectural design documentation
 - [ ] Complete sprint retrospective documentation
 - [ ] Plan for next sprint
diff --git a/docs/website/hugo.yaml b/docs/website/hugo.yaml
index a8abda6..4703fdb 100644
--- a/docs/website/hugo.yaml
+++ b/docs/website/hugo.yaml
@@ -47,7 +47,7 @@ languages:
           url: scaladoc
           weight: 15
         - name: Coverage
-          url: coverage
+          url: https://app.codecov.io/gh/atomwalk12/pps-22-git-insp
           weight: 16
 
 outputs:


Reviews:
user: login: gemini-code-assist[bot]
body: Hello @atomwalk12, I'm Gemini Code Assist[^1]! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

## Summary of Changes
This pull request focuses on enhancing the project's documentation and CI/CD setup for Sprint 1. It includes adding a Codecov badge to the README, creating a GitHub Actions workflow for automated testing and coverage reporting, updating sprint documentation to reflect project infrastructure setup, improving daily updates with detailed summaries, and restructuring documentation for better organization and clarity. The overall goal is to establish a robust development infrastructure and streamline the documentation process.

### Highlights
* **CI/CD**: A new GitHub Actions workflow (`test.yml`) has been added to automate testing and coverage reporting. This workflow includes steps for checking out code, setting up Java, running tests with coverage, and uploading results to Codecov.
* **Code Coverage**: The README has been updated to include a Codecov badge, providing visibility of code coverage metrics. The `hugo.yaml` file was also updated to point to the correct Codecov URL.
* **Documentation**: Several documentation files have been updated to reflect the project's infrastructure setup and provide detailed summaries of progress. This includes restructuring the documentation system and setting up a Hugo-based documentation site.
* **Sprint Backlog**: The sprint backlog has been updated to reflect completed tasks, such as enabling code coverage with Codecov and setting up a website to showcase the project.

### Changelog
<details>
<summary>Click here to see the changelog</summary>

* **.github/workflows/test.yml**
  * Added a new GitHub Actions workflow for automated testing and coverage reporting.
  * Configured the workflow to run on Ubuntu 22.04.
  * Integrated Codecov for tracking code coverage metrics.
  * Added steps to checkout code, setup Java, run tests with coverage, and upload results to Codecov.
* **README.md**
  * Added a Codecov badge to provide visibility of code coverage metrics.
* **docs/content/process/sprint1/daily_updates/2025-03-24.md**
  * Updated the title to "Sprint 1 - Day 1: Project Foundation".
  * Updated the description to reflect initial project setup including build configuration, development tools, and testing infrastructure.
  * Added aliases and tags for better organization and clarity.
  * Updated the summary to reflect the focus on setting up the foundational project infrastructure.
* **docs/content/process/sprint1/daily_updates/2025-03-25.md**
  * Added a new daily update file for 2025-03-25.
  * The file details the infrastructure setup, CI/CD pipelines, and documentation systems.
  * Key achievements include CI/CD setup, documentation infrastructure, and workflow improvements.
* **docs/content/process/sprint1/overview.md**
  * Updated the title to "Sprint 1 Overview: Project Infrastructure Setup".
  * Updated the description to focus on establishing project foundations, development environment, and CI/CD pipelines.
  * Added aliases and tags for better organization and clarity.
  * Updated the summary to reflect the sprint's focus on setting up the project's foundational infrastructure.
* **docs/content/process/sprint1/sprint_backlog.md**
  * Updated the title to "Sprint 1 Backlog: Infrastructure Tasks".
  * Updated the description to detail the breakdown of tasks and user stories for Sprint 1's infrastructure setup phase.
  * Added aliases and tags for better organization and clarity.
  * Updated the summary to provide a comprehensive list of tasks and deliverables for Sprint 1.
  * Marked tasks as completed, such as enabling code coverage with Codecov and setting up a website to showcase the project.
  * Corrected a typo in the task description: "Think about what the project architecture should look like"
* **docs/website/hugo.yaml**
  * Updated the URL for the Coverage link to point to the Codecov URL.

</details>


<details>

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---

**Trivia time!**

What is the primary purpose of a CI/CD pipeline in software development?

<details>
<summary><b>Click here for the answer</b></summary>
<br>
The primary purpose of a CI/CD pipeline is to automate the software delivery process, from code integration and testing to release and deployment, ensuring faster and more reliable software updates.

</details>

state: COMMENTED
author_association: NONE
submitted_at: 2025-03-25T18:48:05Z
user: login: gemini-code-assist[bot]
body: ## Code Review
The pull request focuses on enhancing documentation and setting up CI/CD for Sprint 1. The changes include adding a Codecov badge, creating a GitHub Actions workflow, updating sprint documentation, and restructuring documentation for clarity. Overall, the changes seem well-organized and contribute to a more robust development process.

### Summary of Findings
* **Incomplete task list items**: Several items in the sprint backlog were marked as completed (using '[x]') when they link to external resources that may require configuration or further setup. Ensure that these tasks are genuinely complete and functional.
* **Documentation inconsistencies**: The documentation updates include changes to titles, descriptions, and summaries across multiple files. Verify that these changes accurately reflect the current state of the project and maintain consistency in terminology and scope.
* **Workflow clarity**: While the GitHub Actions workflow is a valuable addition, ensure that the workflow's purpose and functionality are clearly documented, including details on how it integrates with other tools and processes.

### Merge Readiness
The pull request introduces significant improvements to the project's documentation and CI/CD setup. However, before merging, it's crucial to verify the completeness of the tasks marked as done in the sprint backlog and ensure consistency across all documentation files. Addressing these points will ensure a smoother development process and better project understanding. I am unable to directly approve this pull request, and recommend that others review and approve this code before merging.
state: COMMENTED
author_association: NONE
submitted_at: 2025-03-25T18:48:16Z
user: login: gemini-code-assist[bot]
body: ## Code Review
This pull request focuses on enhancing the documentation and CI/CD setup for Sprint 1. The changes include adding a Codecov badge, creating a GitHub Actions workflow for testing and coverage reporting, updating sprint documentation, and restructuring documentation for better organization. Overall, the changes seem well-structured and contribute to improving the project's infrastructure and documentation. However, there are a few areas that could be improved for clarity and adherence to the style guide.

### Summary of Findings
* **Workflow Naming Consistency**: Inconsistent naming of workflow files can lead to confusion. It's recommended to maintain a consistent naming convention across all workflow files for better clarity and maintainability.
* **Documentation Updates**: The documentation updates are comprehensive, but it's important to ensure that all links and references are accurate and up-to-date. Specifically, the TODOs should be addressed.
* **YAML Configuration**: In the `codecov.yml` file, consider adding comments to explain the purpose of each configuration option for better maintainability.

### Merge Readiness
The pull request is almost ready for merging. Addressing the comments regarding workflow naming consistency, documentation updates, and YAML configuration will further improve the quality of the changes. I am unable to directly approve the pull request, and recommend that others review and approve this code before merging. Once the identified issues are resolved, the pull request should be in good shape to be merged.
state: COMMENTED
author_association: NONE
submitted_at: 2025-03-26T06:36:17Z

Review comments:
diff_hunk: @@ -35,11 +35,11 @@ summary: "The tasks that were completed during the first sprint."
 - [x] Configure assembly plugin for JAR creation
 - [x] Set up test environment with ScalaTest
 - [x] Configure memory settings for tests
-- [ ] Enable code coverage with Scoverage and build online report ([Coveralls](https://github.com/scoverage/sbt-coveralls))
-- [ ] Automatic documentation generation from code comments
+- [x] Enable code coverage with Codecov and build online report ([Coveralls](https://github.com/scoverage/sbt-coveralls))
path: docs/content/process/sprint1/sprint_backlog.md
user: login: gemini-code-assist[bot]
body: ![medium](https://img.shields.io/badge/priority-medium-yellow)

The task 'Enable code coverage with Codecov' is marked as complete, but it still references Coveralls in the description. Ensure the description accurately reflects the tool being used. If Codecov is fully implemented, update the description to remove the Coveralls reference.
created_at: 2025-03-25T18:48:16Z
author_association: NONE
diff_hunk: @@ -90,6 +90,5 @@ summary: "The tasks that were completed during the first sprint."
 
 #### Documentation and Process (1 day)
 - [X] Document the development process
-- [ ] Create initial architectural design documentation
 - [ ] Complete sprint retrospective documentation
 - [ ] Plan for next sprint
path: docs/content/process/sprint1/sprint_backlog.md
user: login: gemini-code-assist[bot]
body: ![medium](https://img.shields.io/badge/priority-medium-yellow)

The task 'Create initial architectural design documentation' was removed. If this task is no longer relevant, consider removing the entire section or moving it to a future sprint's backlog. If it's still relevant, ensure it's included in the current or a future sprint.
created_at: 2025-03-25T18:48:16Z
author_association: NONE
diff_hunk: @@ -71,7 +71,7 @@ summary: "The tasks that were completed during the first sprint."
   - Set up GitHub Actions workflow
   - Configure automated releases
   - Set up artifact publishing
-- [ ] Think about how the project architecture should look like
+- [ ] Think about what the project architecture should look like
path: docs/content/process/sprint1/sprint_backlog.md
user: login: gemini-code-assist[bot]
body: ![medium](https://img.shields.io/badge/priority-medium-yellow)

Consider rephrasing this task to be more specific. For example, "Define the high-level project architecture and component interactions". This provides a clearer goal for the task.

```suggestion
- [ ] Define the high-level project architecture and component interactions
```
created_at: 2025-03-26T06:36:16Z
author_association: NONE

PR comments:
user: login: codecov-commenter
created_at: 2025-03-25T18:50:30Z
body: ## Welcome to [Codecov](https://codecov.io?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Razvan) :tada:

Once you merge this PR into your default branch, you're all set! Codecov will compare coverage reports and display results in all future pull requests.

:information_source: You can also turn on [project coverage checks](https://docs.codecov.com/docs/common-recipe-list#set-project-coverage-checks-on-a-pull-request) and [project coverage reporting on Pull Request comment](https://docs.codecov.com/docs/common-recipe-list#show-project-coverage-changes-on-the-pull-request-comment)

Thanks for integrating Codecov - We've got you covered :open_umbrella:
author_association: NONE
user: login: rfvasile
created_at: 2025-03-26T06:36:02Z
body: /gemini review
author_association: OWNER