bluuebunny/crossref_metadata_2025_split huggingface dataset:
Shared genetic risk factors and causal association between psoriasis and coronary artery disease
Authors: Patrick Matthew T. , Li Qinmengge , Wasikowski Rachael , Mehta Nehal , Gudjonsson Johann E. , Elder James T. , Zhou Xiang , Tsoi Lam C. 
Published: November 2022

AbstractPsoriasis and coronary artery disease (CAD) are related comorbidities that are well established, but whether a genetic basis underlies this is not well studied. We apply trans-disease meta-analysis to 11,024 psoriasis and 60,801 CAD cases, along with their associated controls, identifying one opposing and three shared genetic loci, which are confirmed through colocalization analysis. Combining results from Bayesian credible interval analysis with independent information from genomic, epigenomic, and spatial chromatin organization, we prioritize genes (including IFIH1 and IL23A) that have implications for common molecular mechanisms involved in psoriasis and CAD inflammatory signaling. Chronic systemic inflammation has been associated with CAD and myocardial infarction, and Mendelian randomization analysis finds that CAD as an exposure can have a significant causal effect on psoriasis (OR = 1.11; p = 3×10−6) following adjustment for BMI and waist-hip ratio. Together, these findings suggest that systemic inflammation which causes CAD can increase the risk of psoriasis.
Reactive astrocytes transduce inflammation in a blood-brain barrier model through a TNF-STAT3 signaling axis and secretion of alpha 1-antichymotrypsin
Authors: Kim Hyosung , Leng Kun , Park Jinhee , Sorets Alexander G. , Kim Suil , Shostak Alena , Embalabala Rebecca J. , Mlouk Kate , Katdare Ketaki A. , Rose Indigo V. L. , Sturgeon Sarah M. , Neal Emma H. , Ao Yan , Wang Shinong , Sofroniew Michael V. , Brunger Jonathan M. , McMahon Douglas G. , Schrag Matthew S. , Kampmann Martin , Lippmann Ethan S. 
Published: November 2022

AbstractAstrocytes are critical components of the neurovascular unit that support blood-brain barrier (BBB) function. Pathological transformation of astrocytes to reactive states can be protective or harmful to BBB function. Here, using a human induced pluripotent stem cell (iPSC)-derived BBB co-culture model, we show that tumor necrosis factor (TNF) transitions astrocytes to an inflammatory reactive state that causes BBB dysfunction through activation of STAT3 and increased expression of SERPINA3, which encodes alpha 1-antichymotrypsin (α1ACT). To contextualize these findings, we correlated astrocytic STAT3 activation to vascular inflammation in postmortem human tissue. Further, in murine brain organotypic cultures, astrocyte-specific silencing of Serpina3n reduced vascular inflammation after TNF challenge. Last, treatment with recombinant Serpina3n in both ex vivo explant cultures and in vivo was sufficient to induce BBB dysfunction-related molecular changes. Overall, our results define the TNF-STAT3-α1ACT signaling axis as a driver of an inflammatory reactive astrocyte signature that contributes to BBB dysfunction.
A self-amplifying RNA vaccine against COVID-19 with long-term room-temperature stability
Authors: Voigt Emily A. , Gerhardt Alana , Hanson Derek , Jennewein Madeleine F. , Battisti Peter , Reed Sierra , Singh Jasneet , Mohamath Raodoh , Bakken Julie , Beaver Samuel , Press Christopher , Soon-Shiong Patrick , Paddon Christopher J. , Fox Christopher B. , Casper Corey 
Published: November 2022

AbstractmRNA vaccines were the first to be authorized for use against SARS-CoV-2 and have since demonstrated high efficacy against serious illness and death. However, limitations in these vaccines have been recognized due to their requirement for cold storage, short durability of protection, and lack of access in low-resource regions. We have developed an easily-manufactured, potent self-amplifying RNA (saRNA) vaccine against SARS-CoV-2 that is stable at room temperature. This saRNA vaccine is formulated with a nanostructured lipid carrier (NLC), providing stability, ease of manufacturing, and protection against degradation. In preclinical studies, this saRNA/NLC vaccine induced strong humoral immunity, as demonstrated by high pseudovirus neutralization titers to the Alpha, Beta, and Delta variants of concern and induction of bone marrow-resident antibody-secreting cells. Robust Th1-biased T-cell responses were also observed after prime or homologous prime-boost in mice. Notably, the saRNA/NLC platform demonstrated thermostability when stored lyophilized at room temperature for at least 6 months and at refrigerated temperatures for at least 10 months. Taken together, this saRNA delivered by NLC represents a potential improvement in RNA technology that could allow wider access to RNA vaccines for the current COVID-19 and future pandemics.
Light competition drives herbivore and nutrient effects on plant diversity
Authors: Eskelinen Anu , Harpole W. Stanley , Jessen Maria-Theresa , Virtanen Risto , Hautier Yann 
Published: November 2022

AbstractEnrichment of nutrients and loss of herbivores are assumed to cause a loss of plant diversity in grassland ecosystems because they increase plant cover, which leads to a decrease of light in the understory1–3. Empirical tests of the role of competition for light in natural systems are based on indirect evidence, and have been a topic of debate for the last 40 years. Here we show that experimentally restoring light to understory plants in a natural grassland mitigates the loss of plant diversity that is caused by either nutrient enrichment or the absence of mammalian herbivores. The initial effect of light addition on restoring diversity under fertilization was transitory and outweighed by the greater effect of herbivory on light levels, indicating that herbivory is a major factor that controls diversity, partly through light. Our results provide direct experimental evidence, in a natural system, that competition for light is a key mechanism that contributes to the loss of biodiversity after cessation of mammalian herbivory. Our findings also show that the effects of herbivores can outpace the effects of fertilization on competition for light. Management practices that target maintaining grazing by native or domestic herbivores could therefore have applications in protecting biodiversity in grassland ecosystems, because they alleviate competition for light in the understory.
RhoA and vigilin are candidates for immunohistochemical markers for epithelioid malignant mesothelioma
Authors: Hiratsuka Takuya , Yamamoto Takushi , Yoshizawa Akihiko , Toyokuni Shinya , Tsuruyama Tatsuaki 
Published: November 2022

AbstractDiagnostic markers of malignant mesothelioma (MM) have been extensively investigated. Immunohistochemistry (IHC) markers, such as calretinin, have been used for pathologic diagnosis. However, more diagnostic markers are required to improve the specificity and sensitivity of pathologic diagnosis. This study proposed two proteins as diagnostic markers for epithelioid MM. One is RhoA, an MM mutation-susceptible locus-derived protein, and another is vigilin, a lung small cell carcinoma marker. IHC was performed using 93 MM (epithelioid, 71 cases; sarcomatoid, 13 cases; and biphasic, 9 cases), 64 lung adenocarcinoma (LAC), 60 lung squamous cell carcinoma (LSC), and 14 normal mesothelial (NM) tissues. The majority of epithelioid MM cases were positive for both RhoA and vigilin, whereas both IHCs showed lower stainability in biphasic and sarcomatoid MM. Besides, both IHCs showed significantly higher stainability for RhoA and vigilin in epithelioid MM than in LAC and LSC (p < 0.05). Chi-square tests showed that both RhoA and vigilin IHC positive rate in epithelioid MM was not significantly different from that of calretinin (p > 0.05). In the differential diagnosis of MM from lung cancer, the accuracy and specificity of RhoA, vigilin, and calretinin staining were almost equivalent. Further, H-score test showed that there was no significant difference between RhoA versus calretinin and vigilin versus calretinin in IHC positivity in epithelioid MM (p > 0.05). In conclusion, RhoA and vigilin may be candidates for immunohistochemical markers for epithelioid MM.
A mobile EEG study on the psychophysiological effects of walking and crowding in indoor and outdoor urban environments
Authors: Mavros Panagiotis , J Wälti Michel , Nazemi Mohsen , Ong Crystal Huiyi , Hölscher Christoph 
Published: November 2022

AbstractEnvironmental psychologists have established multiple psychological benefits of interaction with natural, compared to urban, environments on emotion, cognition, and attention. Yet, given the increasing urbanisation worldwide, it is equally important to understand how differences within different urban environments influence human psychological experience. We developed a laboratory experiment to examine the psychophysiological effects of the physical (outdoor or indoor) and social (crowded versus uncrowded) environment in healthy young adults, and to validate the use of mobile electroencephalography (EEG) and electrodermal activity (EDA) measurements during active walking. Participants (N = 42) were randomly assigned into a walking or a standing group, and watched six 1-min walk-through videos of green, urban indoor and urban outdoor environments, depicting high or low levels of social density. Self-reported emotional states show that green spaces is perceived as more calm and positive, and reduce attentional demands. Further, the outdoor urban space is perceived more positively than the indoor environment. These findings are consistent with earlier studies on the psychological benefits of nature and confirm the effectiveness of our paradigm and stimuli. In addition, we hypothesised that even short-term exposure to crowded scenes would have negative psychological effects. We found that crowded scenes evoked higher self-reported arousal, more negative self-reported valence, and recruited more cognitive and attentional resources. However, in walking participants, they evoked higher frontal alpha asymmetry, suggesting more positive affective responses. Furthermore, we found that using recent signal-processing methods, the EEG data produced a comparable signal-to-noise ratio between walking and standing, and that despite differences between walking and standing, skin-conductance also captured effectively psychophysiological responses to stimuli. These results suggest that emotional responses to visually presented stimuli can be measured effectively using mobile EEG and EDA in ambulatory settings, and that there is complex interaction between active walking, the social density of urban spaces, and direct and indirect affective responses to such environments.
Effects of high fat diet-induced obesity on pathophysiology, immune cells, and therapeutic efficacy in systemic lupus erythematosus
Authors: Choi Eun Wha , Kim Hee Je , Jung Yun Chan , Go Hye Sun , Seong Je Kyung 
Published: November 2022

AbstractPrior studies have suggested a strong link between obesity and autoimmune diseases. This study aimed to evaluate the effects of high fat diet (HFD)-induced obesity on the disease pathogenesis, immune cell infiltration, and therapeutic efficacy in systemic lupus erythematosus (SLE). Treatment with methylprednisolone significantly increased the survival in the control diet group, but not in the HFD group. An HFD significantly increased the incidence of severe proteinuria and glucose intolerance. Regardless of the diet, treatment with methylprednisolone significantly decreased the serum levels of anti-dsDNA antibodies, IL-2, IL-10, and interferon γ-induced protein 10 (IP-10), and improved the renal pathology scores. Treatment with methylprednisolone significantly lowered the serum levels of IL-6, MCP-1, and TNF-α in the control diet group, but not in the HFD group. HFD significantly increased the proportions of CD45+and M1 cells and significantly decreased the proportion of M2 cells in white adipose tissue; methylprednisolone treatment significantly rescued this effect. In the HFD group, methylprednisolone treatment significantly decreased the M1:M2 and increased the Foxp3+:RORγt+cell in the spleen compared with the untreated group. These data improve our understanding of the effect of HFD on the therapeutic efficacy of corticosteroids in SLE treatment, which could have clinical implications.
Laboratory-based experimental research into the effect of diagenesis on heated bone: implications and improved tools for the characterisation of ancient fire
Authors: Reidsma Femke H. 
Published: November 2022

AbstractThe use of fire is considered to be one of the most important cultural innovations in human evolution. Understanding the taphonomy of fire remains is an important prerequisite for valid interpretations of hominin fire-related behaviour. Presented here are the results of a series of laboratory-based experiments testing the effect of different pH conditions (acidic, neutral, alkaline) on the physical and chemical properties of heated bone (charred and combusted). By taking a fundamental-research approach the study gives insight into the specific effect of pH exposure and its underlying chemical processes, and provides data that can be applied to heated bone from any context and time period. Results show that diagenesis has a significant impact on the preservation potential of heated bones, as well as on the reliability of the analytical techniques used to reconstruct past heating conditions. The study provides reference data and a toolkit for the analysis of heated bone, that explicitly takes diagenesis into account, and in doing so offers a significant improvement to the accuracy with which we can reconstruct heating conditions and fire-related human behaviour in the past.
Canalised and plastic components of melanin-based colouration: a diet-manipulation experiment in house sparrows
Authors: Gudowska Agnieszka , Janas Katarzyna , Wieczorek Justyna , Woznicka Olga , Płonka Przemysław M. , Drobniak Szymon M. 
Published: November 2022

AbstractWhether melanin-based plumage colouration accurately reflects a bird’s quality is still controversial. To better understand potential mechanisms behind the observed variation in plumage colouration, we shifted our attention from a high-level expression of colour to low-level physiological phenomena by targeting the microstructure and pigment content of the feather. In a well-studied model system, the house sparrow (Passer domesticus), we combined an experimental manipulation of birds’ physiological condition and availability of resources that are key to the production of the studied colouration (phenylalanine and tyrosine (PT). We found that feathers from sparrows fed with the control diet had noticeably lower values of brightness, suggesting a higher quality of the ornamental “blackness” in comparison to those sampled from birds fed with a PT-reduced diet. Electron paramagnetic resonance (EPR) spectroscopy detected higher melanin concentrations in samples from the control than the PT-reduced group. Our multi-level analysis excluded mechanisms such as barbule density and melanosomes’ distribution, clearly pointing to the finest-level proxy of colour: the concentration of melanin in melanosomes themselves. Despite melanins being manufactured by birds endogenously, the efficiency of melanogenesis can be noticeably limited by diet. As a result, the birds’ plumage colouration is affected, which may entail consequences in social signalling.
Portable and low-cost hologram verification module using a snapshot-based hyperspectral imaging algorithm
Authors: Mukundan Arvind , Tsao Yu-Ming , Lin Fen-Chi , Wang Hsiang-Chen 
Published: November 2022

AbstractOne of the challenges in differentiating a duplicate hologram from an original one is reflectivity. A slight change in lighting condition will completely change the reflection pattern exhibited by a hologram, and consequently, a standardized duplicate hologram detector has not yet been created. In this study, a portable and low-cost snapshot hyperspectral imaging (HSI) algorithm-based housing module for differentiating between original and duplicate holograms was proposed. The module consisted of a Raspberry Pi 4 processor, a Raspberry Pi camera, a display, and a light-emitting diode lighting system with a dimmer. A visible HSI algorithm that could convert an RGB image captured by the Raspberry Pi camera into a hyperspectral image was established. A specific region of interest was selected from the spectral image and mean gray value (MGV) and reflectivity were measured. Results suggested that shorter wavelengths are the most suitable for differentiating holograms when using MGV as the parameter for classification, while longer wavelengths are the most suitable when using reflectivity. The key features of this design include low cost, simplicity, lack of moving parts, and no requirement for an additional decoding key.
An energy and leakage current monitoring system for abnormality detection in electrical appliances
Authors: Alam Md. Morshed , Shahjalal Md. , Rahman Md. Habibur , Nurcahyanto Himawan , Prihatno Aji Teguh , Kim Youngjin , Jang Yeong Min 
Published: November 2022

AbstractUnsafe electrical appliances can be hazardous to humans and can cause electrical fires if not monitored, analyzed, and controlled. The purpose of this study is to monitor the system’s condition, including the electrical properties of the appliances, and to diagnose fault conditions without deploying sensors on individual appliances and analyzing individual sensor data. Using historical data and an acceptable range of normal and leakage currents, we proposed a hybrid model based on multiclass support vector machines (MSVM) integrated with a rule-based classifier (RBC) to determine the changes in leakage currents caused by installed devices at a certain moment. For this, we developed a sensor-based monitoring device with long-range communication to store real-time data in a cloud database. In the modeling process, RBC algorithm is used to diagnose the constructed device fault and overcurrent fault where MSVM is applied for detecting leakage current fault. To conduct an operational field test, the developed device was integrated into some houses. The results demonstrate the effectiveness of the proposed system in terms of electrical safety monitoring and detection. All the collected data were stored in a structured database that could be remotely accessed through the Internet.
Estimates of genomic heritability and genome-wide association studies for blood parameters in Akkaraman sheep
Authors: Arzik Yunus , Kizilaslan Mehmet , White Stephen N. , Piel Lindsay M. W. , Cinar Mehmet Ulas 
Published: November 2022

AbstractThe aim of this study was to estimate genomic heritability and the impact that genetic backgrounds have on blood parameters in Akkaraman sheep by conducting genome-wide association studies and regional heritability mapping analysis. Genomic heritability estimates for blood parameters ranged from 0.00 to 0.55, indicating that measured phenotypes have a low to moderate heritability. A total of 7 genome- and 13 chromosome-wide significant SNPs were associated with phenotypic changes in 15 blood parameters tested. Accordingly, SCN7A, SCN9A, MYADM-like, CCDC67, ITGA9, MGAT5, SLC19A1, AMPH, NTRK2, MSRA, SLC35F3, SIRT6, CREB3L3, and NAV3 genes as well as three undefined regions (LOC101117887, LOC106991526 and LOC105608461) were suggested as candidates. Most of the identified genes were involved in basic biological processes that are essential to immune system function and cellular growth; specific functions include cellular transport, histone deacetylation, cell differentiation, erythropoiesis, and endocytosis. The top significant SNP for HCT, MCH, and MCHC was found within a genomic region mainly populated by the MYADM-like gene family. This region was previously suggested to be under historical selection pressure in many sheep breeds from various parts of the world. These results have implications on animal breeding program studies due to the effect that the genetic background has on blood parameters, which underlying many productive and wellness related traits.
A dual-view multi-resolution laparoscope for safer and more efficient minimally invasive surgery
Authors: Katz Jeremy , Hua Hong , Lee Sangyoon , Nguyen Mike , Hamilton Allan 
Published: November 2022

AbstractMinimally invasive surgery (MIS) is limited in safety and efficiency by the hand-held nature and narrow fields of view of traditional laparoscopes. A multi-resolution foveated laparoscope (MRFL) was invented to address these concerns. The MRFL is a stationary dual-view imaging device with optical panning and zooming capabilities. It is designed to simultaneously capture and display a zoomed view and supplemental wide view of the surgical field. Optical zooming and panning capabilities facilitate repositioning of the zoomed view without physically moving the system. Additional MRFL features designed to improve safety and efficiency include its snub-nosed endoscope, tool-tip auto tracking, programmable focus profiles, unique selectable display modalities, foot pedal controls, and independently controlled surgeon and assistant displays. An MRFL prototype was constructed to demonstrate and test these features. Testing of the prototype validates its design architecture and confirms the functionality of its features. The current MRFL prototype functions adequately as a proof of concept, but the system features and performance require further improvement to be practical for clinical use.
Identification of candidate genes associated with resistance against race 0 of Colletotrichum lentis in Lens ervoides
Authors: Bawa P. K. , Halliday J. , Kapoor K. , Banniza S. 
Published: November 2022

AbstractResistance to anthracnose caused by the fungal pathogenColletotrichum lentiswas explored through transcriptome sequencing over a period of 24 to 96 h post-inoculation (hpi) of the partially resistant recombinant inbred lines (RIL) LR-66-528 and susceptible LR-66-524 of the crop wild relativeLens ervoidespopulation LR-66. The development of infection vesicles and primary hyphae byC. lentiswere significantly higher on susceptible RIL LR-66-524 compared to partially resistant LR-66-528 at 24 and 48 hpi, but exponential trends in fungal growth were observed between 24 to 96 hpi in both RILs. Comparison of inoculated with mock-inoculated samples revealed 3091 disease responsive genes, among which 477 were differentially expressed between the two RILs. These were clustered into six expression clusters with genes that had either high or low expression in one of the RILs. Differentially expressed genes (DEGs) were functionally annotated and included genes coding LRR and NB-ARC domain disease resistance proteins, protein detoxification, LRR receptor-like kinase family proteins, and wall-associated Ser/Thr Kinases. DEGs were compared to genes in previously published anthracnose resistance QTLs mapped in LR-66 and revealed 22 DEGs located in 3 QTLs. Expression of 21 DEGs was validated using RT-qPCR confirming expression trends in RNA-seq.