bluuebunny/crossref_metadata_2025_split huggingface dataset:
ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset
Authors: Hernandez Petzsche Moritz R. , de la Rosa Ezequiel , Hanning Uta , Wiest Roland , Valenzuela Waldo , Reyes Mauricio , Meyer Maria , Liew Sook-Lei , Kofler Florian , Ezhov Ivan , Robben David , Hutton Alexandre , Friedrich Tassilo , Zarth Teresa , Bürkle Johannes , Baran The Anh , Menze Björn , Broocks Gabriel , Meyer Lukas , Zimmer Claus , Boeckh-Behrens Tobias , Berndt Maria , Ikenberg Benno , Wiestler Benedikt , Kirschke Jan S. 
Published: December 2022

AbstractMagnetic resonance imaging (MRI) is an important imaging modality in stroke. Computer based automated medical image processing is increasingly finding its way into clinical routine. The Ischemic Stroke Lesion Segmentation (ISLES) challenge is a continuous effort to develop and identify benchmark methods for acute and sub-acute ischemic stroke lesion segmentation. Here we introduce an expert-annotated, multicenter MRI dataset for segmentation of acute to subacute stroke lesions (https://doi.org/10.5281/zenodo.7153326). This dataset comprises 400 multi-vendor MRI cases with high variability in stroke lesion size, quantity and location. It is split into a training dataset of n = 250 and a test dataset of n = 150. All training data is publicly available. The test dataset will be used for model validation only and will not be released to the public. This dataset serves as the foundation of the ISLES 2022 challenge (https://www.isles-challenge.org/) with the goal of finding algorithmic methods to enable the development and benchmarking of automatic, robust and accurate segmentation methods for ischemic stroke.
Influence of Vitamin A supplementation on inflammatory biomarkers in adults: a systematic review and meta-analysis of randomized clinical trials
Authors: Gholizadeh Mohammad , Basafa Roodi Poorya , Abaj Faezeh , Shab-Bidar Sakineh , Saedisomeolia Ahmad , Asbaghi Omid , lak Mahshid 
Published: December 2022

AbstractVitamin A is an anti-oxidant which has been presumed to act as an anti-infective vitamin in many studies. This study aimed to evaluate the association between vitamin A supplementation and c-reactive protein (CRP), tumor necrosis factor-alpha (TNF-α), and interleukin 6 (IL-6) levels in randomized control trials (RCTs) studies on adults. A systematic search was performed on databases including PUBMED, SCOPUS, and the Cochrane library. The studies included were considered for data extraction and subsequently assessed for effect. Weighted mean differences (WMD) and 95% confidence intervals (CIs) were evaluated. Among 13,219 articles 13 studies were included for analysis of CRP and TNF-α, as well as 9 studies included for IL-6 in quality and quantity. The pooled WMD analysis of CRP demonstrated that vitamin A supplementation significantly increased CRP concentration with (WMD: 0.84 mg/L; 95% CI 0.29–1.39, I2 = 0.96.2% and p value < 0.003). However, there was no significant correlation between vitamin A supplementation and lower plasma TNF-α (p < 0.45)). Subgroup analysis by dosage demonstrate significant association between vitamin A supplementation and IL-6 in dosage with 50,000 with (WMD: − 1.53 mg/L; 95% CI − 2.36 to − 0.71, p value < 0.00001) as well as a negative significant association was seen at 44 weeks of supplementation with 50,000 IU/day retinyl palmitate and TNF-a in chronic hepatitis B conditions with (− 0.94 (− 1.19, − 0.69) p < 0.0001). The result of this study demonstrates that supplementation of vitamin A at low and high dosages for short and long durations increases the CRP plasma concentrations on adults and vitamin A supplementation decreases the TNF-α concentrations in chronic hepatitis B on adults. Therefore, there is an inverse association between vitamin A supplementation and plasma and fecal IL-6 concentrations in many infection conditions.
Evaluating anemia on non-contrast thoracic computed tomography
Authors: Abbasi Bita , Seyed Hosseini Maliheh , Moodi Ghalibaf AmirAli , Akhavan Reza , Emadzadeh Maryam , Bolvardi Ehsan 
Published: December 2022

AbstractAnemia is a major global disease burden factor linked to an adverse impact on overall prognosis and negatively affects the quality of life. There are some suggested findings for anemia on non-contrast chest CT, like relatively dense interventricular septum (septal sign) or fairly dense aortic wall (aortic ring sign). The measured attenuation value is a reproducible physical density measurement, readily obtainable from a standard CT examination. There is no reliable cut-off for blood attenuation to suggest anemia on the non-contrast chest CT. In the current study, we evaluated subjective and objective criteria’ diagnostic accuracy for diagnosing anemia on unenhanced thoracic CT. This study is approved by Mashhad University of Medical Sciences. The patients admitted in the internal medicine ward of our hospital from June 2019 to March 2020 for whom a non-contrast chest CT was acquired for any non-traumatic medical indication, were enrolled in this retrospective study. For the subjective assessment, the radiologists were asked to record the presence or absence of the “aortic ring sign” and “interventricular septum sign”. For the objective evaluations, blood density was measured at various anatomic locations. A total of 325 patients were included in this study. There was a significant correlation between blood attenuation in all measured segments and Hb level (0.78 (R2: 0.61), p = 0.000). Findings revealed that considering the aortic arch threshold value as 20 HU is the best diagnostic performance for detecting severe anemia. Subjective analysis revealed that the aortic ring sign was more sensitive (82.5%) than the interventricular septum sign (32%) in detecting anemia, whereas the latter character was more specific (87% and 99.2%, respectively). The results suggest that it is possible to detect anemia from an unenhanced chest CT scan. Both objective and subjective criteria show promising sensitivity and specificity.
Enhanced chimp optimization algorithm for high level synthesis of digital filters
Authors: Kaur Mandeep , Kaur Ranjit , Singh Narinder 
Published: December 2022

AbstractThe HLS of digital filters is a complex optimization task in electronic design automation that increases the level of abstraction for designing and scheming digital circuits. The complexity of this issue attracting the interest of the researcher and solution of this issue is a big challenge for the researcher. The scientists are trying to present the various most powerful methods for this issue, but keep in mind these methods could be trapped in the complex space of this problem due to own weaknesses. Due to shortcomings of these methods, we are trying to design a new framework with the mixture of the phases of the powerful approaches for high level synthesis of digital filters in this work. This modification has been done by merging the chimp optimizer with sine cosine functions. The sine cosine phases helped in enhancing the exploitation phase of the chimp optimizer and also ignored the local optima in the search area during the searching of new shortest paths. The algorithms have been applied on 23-standard test suites and 14-digital filters for verifying the performance of the algorithms. Experimental results of single and multi-objective functions have been compared in terms of best score, best maxima, average, standard deviation, execution time, occupied area and speed respectively. Furthermore, by analyzing the effectiveness of the proposed algorithm with the recent algorithms for the HLS digital filters design, this can be concluded that the proposed method dominates the other two methods in HLS digital filters design. Another prominent feature of the proposed system in addition to the stated enhancement, is its rapid runtime, lowest delay, occupied area and lowest power in achieving an appropriate response. This could greatly reduce the cost of systems with broad dimensions while increasing the design speed.
Offline rTMS inhibition of the right dorsolateral prefrontal cortex impairs reappraisal efficacy
Authors: Wyczesany Miroslaw , Adamczyk Agnieszka K. , Hobot Justyna , Barbalinardo Giansalvo , Adamczyk Przemysław , Labaza Adam , Ligeza Tomasz S. 
Published: December 2022

AbstractIn this study we verified the causal role of the bilateral dorsolateral prefrontal cortex (DLPFC) in emotional regulation using a strategy of reappraisal, which involves intentionally changing the meaning of an affective event to reduce its emotional impact. Healthy participants (n = 26; mean age = 25.4) underwent three sessions of inhibitory continuous theta burst stimulation (cTBS) applied on three different days over the left or right DLPFC, or the vertex. After applying the stimulation protocol participants were presented with neutral and negative pictorial stimuli that had to be either passively watched or reappraised. The efficacy of emotional control was quantified using the Late Positive Potential (LPP), the neural marker of motivated attention and elaborated stimulus processing. The results showed that reappraisal was compromised after inhibitory stimulation of the right DLPFC compared to the vertex. This impairment of affective modulation was reflected in both early (350–750 ms) and late (750–1500 ms) time windows. As no session differences during the passive watching conditions were found, the decrease in reappraisal efficacy due to non-specific changes in basic perceptual processing was considered unlikely. Instead, we suggest that inhibition of the right DLPFC primarily affects the top-down mechanism of attentional deployment. This results in disturbances of attentional processes that are necessary to thoroughly elaborate the content of affective stimuli to enable their new, less negative interpretation.
Cortical and white matter anatomy relevant for the lateral and superior approaches to resect intraaxial lesions within the frontal lobe
Authors: Dziedzic Tomasz Andrzej , Bala Aleksandra , Balasa Artur , Olejnik Agnieszka , Marchel Andrzej 
Published: December 2022

AbstractDespite being associated with high-order neurocognitive functions, the frontal lobe plays an important role in core neurological functions, such as motor and language functions. The aim of this study was to present a neurosurgical perspective of the cortical and subcortical anatomy of the frontal lobe in terms of surgical treatment of intraaxial frontal lobe lesions. We also discuss the results of direct brain mapping when awake craniotomy is performed. Ten adult cerebral hemispheres were prepared for white matter dissection according to the Klingler technique. Intraaxial frontal lobe lesions are approached with a superior or lateral trajectory during awake conditions. The highly eloquent cortex within the frontal lobe is identified within the inferior frontal gyrus (IFG) and precentral gyrus. The trajectory of the approach is mainly related to the position of the lesion in relation to the arcuate fascicle/superior longitudinal fascicle complex and ventricular system. Knowledge of the cortical and subcortical anatomy and its function within the frontal lobe is essential for preoperative planning and predicting the risk of immediate and long-term postoperative deficits. This allows surgeons to properly set the extent of the resection and type of approach during preoperative planning.
Methodological challenges in the genomic analysis of an endangered mammal population with low genetic diversity
Authors: Escoda Lídia , Hawlitschek Oliver , González-Esteban Jorge , Castresana Jose 
Published: December 2022

AbstractRecently, populations of various species with very low genetic diversity have been discovered. Some of these persist in the long term, but others could face extinction due to accelerated loss of fitness. In this work, we characterize 45 individuals of one of these populations, belonging to the Iberian desman (Galemys pyrenaicus). For this, we used the ddRADseq technique, which generated 1421 SNPs. The heterozygosity values of the analyzed individuals were among the lowest recorded for mammals, ranging from 26 to 91 SNPs/Mb. Furthermore, the individuals from one of the localities, highly isolated due to strong barriers, presented extremely high inbreeding coefficients, with values above 0.7. Under this scenario of low genetic diversity and elevated inbreeding levels, some individuals appeared to be almost genetically identical. We used different methods and simulations to determine if genetic identification and parentage analysis were possible in this population. Only one of the methods, which does not assume population homogeneity, was able to identify all individuals correctly. Therefore, genetically impoverished populations pose a great methodological challenge for their genetic study. However, these populations are of primary scientific and conservation interest, so it is essential to characterize them genetically and improve genomic methodologies for their research.
A hydraulic soft microgripper for biological studies
Authors: Baghbani Kordmahale Sina , Qu Jian , Muliana Anastasia , Kameoka Jun 
Published: December 2022

AbstractWe have developed a microscale hydraulic soft gripper and demonstrated the handling of an insect without damage. This gripper is built on Polydimethylsiloxane (PDMS) with the soft material casting technique to form three finger-like columns, which are placed on a circular membrane. The fingers have a length of 1.5 mm and a diameter of 300 µm each; the distance between the two fingers is 600 µm of center-to-center distance. A membrane as a 150 µm soft film is built on top of a cylindrical hollow space. Applying pressure to the interior space can bend the membrane. Bending the membrane causes the motion of opening/closing of the gripper, and as a result, the three fingers can grip an object or release it. The PDMS was characterized, and the experimental results were used later in Abaqus software to simulate the gripping motion. The range of deformation of the gripper was investigated by simulation and experiment. The result of the simulation agrees with the experiments. The maximum 543 µN force was measured for this microfluidic-compatible microgripper and it could lift a ball that weighs 168.4 mg and has a 0.5 mm diameter. Using this microgripper, an ant was manipulated successfully without any damage. Results showed fabricated device has great a potential as micro/bio manipulator.
Simulation of the inelastic deformation of porous reservoirs under cyclic loading relevant for underground hydrogen storage
Authors: Kumar Kishan Ramesh , Honorio Herminio Tasinafo , Hajibeygi Hadi 
Published: December 2022

AbstractSubsurface geological formations can be utilized to safely store large-scale (TWh) renewable energy in the form of green gases such as hydrogen. Successful implementation of this technology involves estimating feasible storage sites, including rigorous mechanical safety analyses. Geological formations are often highly heterogeneous and entail complex nonlinear inelastic rock deformation physics when utilized for cyclic energy storage. In this work, we present a novel scalable computational framework to analyse the impact of nonlinear deformation of porous reservoirs under cyclic loading. The proposed methodology includes three different time-dependent nonlinear constitutive models to appropriately describe the behavior of sandstone, shale rock and salt rock. These constitutive models are studied and benchmarked against both numerical and experimental results in the literature. An implicit time-integration scheme is developed to preserve the stability of the simulation. In order to ensure its scalability, the numerical strategy adopts a multiscale finite element formulation, in which coarse scale systems with locally-computed basis functions are constructed and solved. Further, the effect of heterogeneity on the results and estimation of deformation is analyzed. Lastly, the Bergermeer test case—an active Dutch natural gas storage field—is studied to investigate the influence of inelastic deformation on the uplift caused by cyclic injection and production of gas. The present study shows acceptable subsidence predictions in this field-scale test, once the properties of the finite element representative elementary volumes are tuned with the experimental data.
Quercetin and metformin synergistically reverse endothelial dysfunction in the isolated aorta of streptozotocin-nicotinamide- induced diabetic rats
Authors: Chellian Jestin , Mak Kit-Kay , Chellappan Dinesh Kumar , Krishnappa Purushotham , Pichika Mallikarjuna Rao 
Published: December 2022

AbstractThe antidiabetic effects of quercetin and metformin are well known. However, their synergistic effect in reversing the symptoms of diabetes-induced endothelial dysfunction remains unknown. In this study, we have investigated their synergistic effect in streptozotocin (STZ)-nicotinamide induced diabetic rats. Seventy-five rats were divided into five groups; normal control, diabetic control, treatment groups (10 mg/kg quercetin, 180 mg/kg metformin, and combined). The plasma glucose and lipid levels, liver enzymes,ex-vivostudies on aortic rings, histology of liver, kidney, pancreas, abdominal aorta and thoracic aorta, and immunohistochemical studies were carried out. The findings revealed that the combination of quercetin and metformin showed a greater antidiabetic effect than either drug, and rendered protection to the endothelium. The combination effectively reversed the hyperglycemia-induced endothelial dysfunction in diabetic rats. Furthermore, it also reversed the dysregulated expression of eNOS, 3-nitrotyrosine, VCAM-1, CD31 and SIRT-1. Overall, the present study's findings demonstrate that quercetin potentiates the activity of metformin to control the complications associated with diabetes.
Implicit motor imagery performance and cortical activity throughout the menstrual cycle
Authors: Faustino Lacerda de Souza Rafaela , Borges de Araujo Lima Luana Adalice , Almeida Silveira Mendes Thatiane Maria , Soares Brandão Daniel , Andrés Laplagne Diego , Cordeiro de Sousa Maria Bernardete 
Published: December 2022

AbstractStudies show that female motor and visuospatial skills are modulated by the menstrual cycle. Implicit motor imagery, meaning the involuntary imagination of movements during a task, involves kinesthetic, visual, and spatial aspects of the corresponding action and can be investigated by using the hand laterality judgment task (HLJT). In this study we aimed to investigate whether implicit motor imagery performance and cortical activity are altered throughout the menstrual cycle, as demonstrated by motor skills in females. Thus, 31 healthy women underwent HLJT during the menstrual, follicular and luteal phases of their menstrual cycles. Right-handed participants had to recognize the laterality (right or left) of hands presented in different views (palm or back) and orientations on a computer screen. Test performance and EEG event-related potentials were analyzed. Participants performed better in the test in the follicular and luteal phases when compared to the menstrual phase, and the accuracy of the test was positively correlated with estradiol levels in the follicular phase. The difference between medial and lateral hand orientations for rotation-related negativity was significant in the medial and left parieto-occipital regions only in the follicular phase. These findings suggest positive modulating action of estradiol in performing implicit motor imagery.
Information theoretical limits for quantum optimal control solutions: error scaling of noisy control channels
Authors: Müller Matthias M. , Gherardini Stefano , Calarco Tommaso , Montangero Simone , Caruso Filippo 
Published: December 2022

AbstractAccurate manipulations of an open quantum system require a deep knowledge of its controllability properties and the information content of the implemented control fields. By using tools of information and quantum optimal control theory, we provide analytical bounds (information-time bounds) to characterize our capability to control the system when subject to arbitrary sources of noise. Moreover, since the presence of an external noise field induces open quantum system dynamics, we also show that the results provided by the information-time bounds are in very good agreement with the Kofman–Kurizki universal formula describing decoherence processes. Finally, we numerically test the scaling of the control accuracy as a function of the noise parameters, by means of the dressed chopped random basis (dCRAB) algorithm for quantum optimal control.
Computational version of the correlation light-field camera
Authors: Gregory Thomas , Edgar Matthew P. , Gibson Graham M. , Moreau Paul-Antoine 
Published: December 2022

AbstractLight-field cameras allow the acquisition of both the spatial and angular components of the light-field. The conventional way to perform such acquisitions leads to a strong spatio-angular resolution limitation but correlation-enabled plenoptic cameras have been introduced recently that relax this constraint. Here we use a computational version of this concept to acquire realistic light-fields images using a commercial DSLR Camera lens as an imaging system. By placing the image sensor in the focal plane of a lens, within the camera we ensure the acquisition of pure angular components together with the spatial information. We perform an acquisition presenting a high spatio-angular rays resolution obtained through a trade off of the temporal resolution. The acquisition reported is photo-realistic and the acquisition of diffraction limited features is observed with the setup. Finally, we demonstrate the refocusing abilities of the camera.
In vivo imaging of brown adipose tissue vasculature reactivity during adrenergic stimulation of non-shivering thermogenesis in mice
Authors: Garside John C. , Livingston Eric W. , Frank Jonathan E. , Yuan Hong , Branca Rosa T. 
Published: December 2022

AbstractBrown adipose tissue (BAT) is a fat tissue specialized in heat production (non-shivering thermogenesis) and used by mammals to defend core body temperature when exposed to cold. Several studies have shown that during non-shivering thermogenesis the increase in BAT oxygen demand is met by a local and specific increase in tissue’s blood flow. While the vasculature of BAT has been extensively studied postmortem in rodents using histology, optical and CT imaging techniques, vasculature changes during stimulation of non-shivering thermogenesis have never been directly detected in vivo. Here, by using computed tomography (CT) angiography with gold nanoparticles we investigate, non-invasively, changes in BAT vasculature during adrenergic stimulation of non-shivering thermogenesis by norepinephrine, a vasoconstrictor known to mediate brown fat heat production, and by CL 316,243, a specific β3-adrenergic agonist also known to elicit BAT thermogenesis in rodents. We found that while CL 316,243 causes local vasodilation in BAT, with little impact on the rest of the vasculature throughout the body, norepinephrine leads to local vasodilation in addition to peripheral vasoconstriction. As a result, a significantly greater relative increase in BAT perfusion is observed following the injection of NE compared to CL. This study demonstrates the use of in vivo CT angiography as an effective tool in assessing vascular reactivity in BAT both qualitatively and quantitatively in preclinical studies.