bluuebunny/crossref_metadata_2025_split huggingface dataset:
Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages
Authors: Thompson Joyce J. , Lee Daniel J. , Mitra Apratim , Frail Sarah , Dale Ryan K. , Rocha Pedro P. 
Published: July 2022

AbstractFate-determining transcription factors (TFs) can promote lineage-restricted transcriptional programs from common progenitor states. The inner cell mass (ICM) of mouse blastocysts co-expresses the TFs NANOG and GATA6, which drive the bifurcation of the ICM into either the epiblast (Epi) or the primitive endoderm (PrE), respectively. Here, we induce GATA6 in embryonic stem cells–that also express NANOG–to characterize how a state of co-expression of opposing TFs resolves into divergent lineages. Surprisingly, we find that GATA6 and NANOG co-bind at the vast majority of Epi and PrE enhancers, a phenomenon we also observe in blastocysts. The co-bound state is followed by eviction and repression of Epi TFs, and quick remodeling of chromatin and enhancer-promoter contacts thus establishing the PrE lineage while repressing the Epi fate. We propose that co-binding of GATA6 and NANOG at shared enhancers maintains ICM plasticity and promotes the rapid establishment of Epi- and PrE-specific transcriptional programs.
Optical anomalous Hall effect enhanced by flat bands in ferromagnetic van der Waals semimetal
Authors: Kato Yoshihiro D. , Okamura Yoshihiro , Minami Susumu , Fujimura Reika , Mogi Masataka , Yoshimi Ryutaro , Tsukazaki Atsushi , Takahashi Kei S. , Kawasaki Masashi , Arita Ryotaro , Tokura Yoshinori , Takahashi Youtarou 
Published: July 2022

AbstractGeometrical aspects of electronic states in condensed matter have led to the experimental realization of enhanced electromagnetic phenomena, as exemplified by the giant anomalous Hall effect (AHE) in topological semimetals. However, the guideline to the large AHE is still immature due to lack of profound understanding of the sources of the Berry curvature in actual electronic structures; the main focus has concentrated only on the band crossings near the Fermi level. Here, we show that the band crossings and flat bands cooperatively produce the large intrinsic AHE in ferromagnetic nodal line semimetal candidate Fe3GeTe2. The terahertz and infrared magneto-optical spectroscopy reveals that two explicit resonance structures in the optical Hall conductivity spectra σxy(ω) are closely related to the AHE. The first-principles calculation suggests that both the flat bands having large density of states (DOS) and the band crossings near the Fermi level are the main causes of these Hall resonances. Our findings unveil a mechanism to enhance the AHE based on the flat bands, which gives insights into the topological material design.
Antiviral activity of ouabain against a Brazilian Zika virus strain
Authors: Carvalho Deyse Cristina Madruga , da Silva Poliana Gomes , Dantas Willyenne Marília , da Silva Severino Jefferson Ribeiro , da Silva Caroline Targino Alves , Chaves Elton José Ferreira , de Araújo Demetrius Antônio Machado , de Oliveira Ronaldo Nascimento , Rodrigues-Mascarenhas Sandra , Pena Lindomar José 
Published: July 2022

AbstractZika virus (ZIKV) is an emerging arbovirus associated with neurological disorders. Currently, no specific vaccines or antivirals are available to treat the ZIKV infection. Ouabain, a cardiotonic steroid known as Na+/K+-ATPase inhibitor, has been previously described as an immunomodulatory substance by our group. Here, we evaluated for the first time the antiviral activity of this promising substance against a Brazilian ZIKV strain. Vero cells were treated with different concentrations of ouabain before and after the infection with ZIKV. The antiviral effect was evaluated by the TCID50 method and RT-qPCR. Ouabain presented a dose-dependent inhibitory effect against ZIKV, mainly when added post infection. The reduction of infectious virus was accompanied by a decrease in ZIKV RNA levels, suggesting that the mechanism of ZIKV inhibition by ouabain occurred at the replication step. In addition, our in silico data demonstrated a conformational stability and favorable binding free energy of ouabain in the biding sites of the NS5-RdRp and NS3-helicase proteins, which could be related to its mechanism of action. Taken together, these data demonstrate the antiviral activity of ouabain against a Brazilian ZIKV strain and evidence the potential of cardiotonic steroids as promising antiviral agents.
Metabolic signatures associated with oncolytic myxoma viral infections
Authors: Mahar Rohit , Ragavan Mukundan , Chang Mario C. , Hardiman Savannah , Moussatche Nissin , Behar Adam , Renne Rolf , Merritt Matthew E. 
Published: July 2022

AbstractOncolytic viral therapy is a recent advance in cancer treatment, demonstrating promise as a primary treatment option. To date, the secondary metabolic effects of viral infection in cancer cells has not been extensively studied. In this work, we have analyzed early-stage metabolic changes in cancer cells associated with oncolytic myxoma virus infection. Using GC–MS based metabolomics, we characterized the myxoma virus infection induced metabolic changes in three cancer cell lines—small cell (H446) and non-small cell (A549) lung cancers, and glioblastoma (SFxL). We show that even at an early stage (6 and 12 h) myxoma infection causes profound changes in cancer cell metabolism spanning several important pathways such as the citric acid cycle, fatty acid metabolism, and amino acid metabolism. In general, the metabolic effects of viral infection across cell lines are not conserved. However, we have identified several candidate metabolites that can potentially serve as biomarkers for monitoring oncolytic viral action in general.
Sexual selection for males with beneficial mutations
Authors: Roberts Gilbert , Petrie Marion 
Published: July 2022

AbstractSexual selection is the process by which traits providing a mating advantage are favoured. Theoretical treatments of the evolution of sex by sexual selection propose that it operates by reducing the load of deleterious mutations. Here, we postulate instead that sexual selection primarily acts through females preferentially mating with males carrying beneficial mutations. We used simulation and analytical modelling to investigate the evolutionary dynamics of beneficial mutations in the presence of sexual selection. We found that female choice for males with beneficial mutations had a much greater impact on genetic quality than choice for males with low mutational load. We also relaxed the typical assumption of a fixed mutation rate. For deleterious mutations, mutation rate should always be minimized, but when rare beneficial mutations can occur, female choice for males with those rare beneficial mutations could overcome a decline in average fitness and allow an increase in mutation rate. We propose that sexual selection for beneficial mutations could overcome the ‘two-fold cost of sex’ much more readily than choice for males with low mutational load and may therefore be a more powerful explanation for the prevalence of sexual reproduction than the existing theory. If sexual selection results in higher fitness at higher mutation rates, and if the variability produced by mutation itself promotes sexual selection, then a feedback loop between these two factors could have had a decisive role in driving adaptation.
Prevalence and correlates of burnout among physicians in a developing country facing multi-layered crises: a cross-sectional study
Authors: Youssef Dalal , Youssef Janet , Abou-Abbas Linda , Kawtharani Malak , Hassan Hamad 
Published: July 2022

AbstractBurnout among physicians is a serious concern that cultivates its seeds during their education. This study assessed the prevalence of burnout among Lebanese physicians and explored its correlates and the combined effects of the pandemic and the economic crisis on burnout. A web-based cross-sectional study was conducted in December 2020 using a snowball sampling technique. Moderate and high levels of burnout hit 90.7% of the physicians where personal, work-related, and client-related burnout were detected among 80.4%, 75.63%, and 69.6% of them respectively. A strong association was found between the higher level of burnout and female gender, younger age, being single, having a dependent child, living with an elderly or a family member with comorbidities, and insufficient sleeping hours. Physicians’ specialties, working in a public health facility, limited years of professional experience, lack of previous experience in a pandemic, and extensive working hours were also associated with increased burnout. Furthermore, low income, working in the frontline, higher threat perception, and fear of COVID-19 were contributing to higher burnout. The combined effect of threat perception and financial hardship significantly increased burnout levels. The alarming burnout level detected among physicians urges health authorities to take prompt actions to enhance the physicians’ well-being.
Impact of elevated systolic arterial pulmonary pressure on the total mortality rate after acute myocardial infarction in the elderly
Authors: Barywani Salim Bary , Johansson Magnus C. , Kontogeorgos Silvana , Mandalenakis Zacharias , Hansson Per-Olof 
Published: July 2022

AbstractReduced left ventricular ejection fraction (LVEF) is associated with increased mortality after acute myocardial infarction (AMI). However, the prognostic impact of elevated systolic pulmonary artery pressure (sPAP) in the very elderly patients after AMI is lacking. We aimed to study the impact of elevated sPAP on one- and five-year all-cause mortality after AMI in very elderly patients, 80 years of age and older. Of a total number of 353 patients (≥ 80 years) who were hospitalized with acute coronary syndrome, 162 patients presenting with AMI and with available data of sPAP on echocardiography were included and followed-up for 5 years. The survival analyses were performed using Cox-Regression models adjusted for conventional risk factors including LVEF. Altogether 66 of 162 patients (41%) had ST-segment elevation MI, and 121 (75%) of patients were treated with percutaneous coronary intervention in the acute phase. Echocardiography during the admission revealed that 78 patients (48%) had a LVEF ≤ 45% and 66 patients (41%) had a sPAP ≥ 40 mmHg. After one and five years of follow-up, 23% (n = 33) and 53% (n = 86) of patients died, respectively. A multivariable Cox-Regression analysis showed that the elevated sPAP (≥ 40 mmHg) was an independent predictor of increased mortality in both one and five years after AMI; HR of 2.63 (95%, CI 1.19–5.84, P 0.017) and HR of 2.08 (95%, CI 1.25–3.44, P 0.005) respectively, whereas LVEF ≤ 45% did not show any statistically significant impact, neither on one- nor on five-year mortality (HR 1.3, 95% CI 0.6–2.9, p = 0.469) and (HR 1.4, 95% CI 0.8–2.4, p = 0.158), respectively. Elevated sPAP was an independent risk factor for one- and five-year all-cause mortality after AMI in very elderly patients and sPAP seems to be a better prognostic predictor for all-cause mortality than LVEF. The risk of all-cause mortality after AMI increased with increasing sPAP.
A new endophyte Monascus ruber SRZ112 as an efficient production platform of natural pigments using agro-industrial wastes
Authors: El-Sayed El-Sayed R. , Gach Joanna , Olejniczak Teresa , Boratyński Filip 
Published: July 2022

AbstractA number of biopigment applications in various industrial sectors are gaining importance due to the growing consumer interest in their natural origin. Thus, this work was conducted to valorize endophytic fungi as an efficient production platform for natural pigments. A promising strain isolated from leaves of Origanum majorana was identified as Monascus ruber SRZ112 produced several types of pigments. The nature of the pigments, mainly rubropunctamine, monascin, ankaflavin, rubropunctatin, and monascorubrin in the fungal extract was studied by LC/ESI–MS/MS analyses. As a first step towards developing an efficient production of red pigments, the suitability of seven types of agro-industrial waste was evaluated. The highest yield of red pigments was obtained using potato peel moistened with mineral salt broth as a culture medium. To increase yield of red pigments, favourable culture conditions including incubation temperature, incubation period, pH of moistening agent, inoculum concentration, substrate weight and moisture level were evaluated. Additionally, yield of red pigments was intensified after the exposure of M. ruber SRZ112 spores to 1.00 KGy gamma rays. The final yield was improved by a 22.12-fold increase from 23.55 to 3351.87 AU g−1. The anticancer and antioxidant properties of the pigment’s extract from the fungal culture were also studied. The obtained data indicated activity of the extract against human breast cancer cell lines with no significant cytotoxicity against normal cell lines. The extract also showed a free radical scavenging potential. This is the first report, to our knowledge, on the isolation of the endophytic M. ruber SRZ112 strain with the successful production of natural pigments under solid-state fermentation using potato peel as a substrate.
SARS-CoV-2 suppression and early closure of bars and restaurants: a longitudinal natural experiment
Authors: Takaku Reo , Yokoyama Izumi , Tabuchi Takahiro , Oguni Masaki , Fujiwara Takeo 
Published: July 2022

AbstractDespite severe economic damage, full-service restaurants and bars have been closed in hopes of suppressing the spread of SARS-CoV-2 worldwide. This paper explores whether the early closure of restaurants and bars in February 2021 reduced symptoms of SARS-CoV-2 in Japan. Using a large-scale nationally representative longitudinal survey, we found that the early closure of restaurants and bars decreased the utilization rate among young persons (OR 0.688; CI95 0.515–0.918) and those who visited these places before the pandemic (OR 0.754; CI95 0.594–0.957). However, symptoms of SARS-CoV-2 did not decrease in these active and high-risk subpopulations. Among the more inactive and low-risk subpopulations, such as elderly persons, no discernible impacts are observed in both the utilization of restaurants and bars and the symptoms of SARS-CoV-2. These results suggest that the early closure of restaurants and bars without any other concurrent measures does not contribute to the suppression of SARS-CoV-2.
Sulfaphenazole reduces thermal and pressure injury severity through rapid restoration of tissue perfusion
Authors: Turner Christopher T. , Pawluk Megan , Bolsoni Juliana , Zeglinski Matthew R. , Shen Yue , Zhao Hongyan , Ponomarev Tatjana , Richardson Katlyn C. , West Christopher R. , Papp Anthony , Granville David J. 
Published: July 2022

AbstractPressure injuries, also known as pressure ulcers, are regions of localized damage to the skin and/or underlying tissue. Repeated rounds of ischemia–reperfusion (I/R) have a major causative role for tissue damage in pressure injury. Ischemia prevents oxygen/nutrient supply, and restoration of blood flow induces a burst of reactive oxygen species that damages blood vessels, surrounding tissues and can halt blood flow return. Minimizing the consequences of repeated I/R is expected to provide a protective effect against pressure injury. Sulfaphenazole (SP), an off patent sulfonamide antibiotic, is a potent CYP 2C6 and CYP 2C9 inhibitor, functioning to decrease post-ischemic vascular dysfunction and increase blood flow. The therapeutic effect of SP on pressure injury was therefore investigated in apolipoprotein E knockout mice, a model of aging susceptible to ischemic injury, which were subjected to repeated rounds of I/R-induced skin injury. SP reduced overall severity, improved wound closure and increased wound tensile strength compared to vehicle-treated controls. Saliently, SP restored tissue perfusion in and around the wound rapidly to pre-injury levels, decreased tissue hypoxia, and reduced both inflammation and fibrosis. SP also demonstrated bactericidal activity through enhanced M1 macrophage activity. The efficacy of SP in reducing thermal injury severity was also demonstrated. SP is therefore a potential therapeutic option for pressure injury and other ischemic skin injuries.
Predicting suitable habitats of Melia azedarach L. in China using data mining
Authors: Feng Lei , Tian Xiangni , El-Kassaby Yousry A. , Qiu Jian , Feng Ze , Sun Jiejie , Wang Guibin , Wang Tongli 
Published: July 2022

AbstractMelia azedarachL. is an important economic tree widely distributed in tropical and subtropical regions of China and some other countries. However, it is unclear how the species’ suitable habitat will respond to future climate changes. We aimed to select the most accurate one among seven data mining models to predict the current and future suitable habitats forM. azedarachin China. These models include: maximum entropy (MaxEnt), support vector machine (SVM), generalized linear model (GLM), random forest (RF), naive bayesian model (NBM), extreme gradient boosting (XGBoost), and gradient boosting machine (GBM). A total of 906 M. azedarachlocations were identified, and sixteen climate predictors were used for model building. The models’ validity was assessed using three measures (Area Under the Curves (AUC), kappa, and overall accuracy (OA)). We found that the RF provided the most outstanding performance in prediction power and generalization capacity. The top climate factors affecting the species’ suitable habitats were mean coldest month temperature (MCMT), followed by the number of frost-free days (NFFD), degree-days above 18 °C (DD > 18), temperature difference between MWMT and MCMT, or continentality (TD), mean annual precipitation (MAP), and degree-days below 18 °C (DD < 18). We projected that future suitable habitat of this species would increase under both the RCP4.5 and RCP8.5 scenarios for the 2011–2040 (2020s), 2041–2070 (2050s), and 2071–2100 (2080s). Our findings are expected to assist in better understanding the impact of climate change on the species and provide scientific basis for its planting and conservation.
Dynamic CT myocardial perfusion without image registration
Authors: Hubbard Logan , Malkasian Shant , Molloi Sabee 
Published: July 2022

AbstractThe aim of this study was to validate a motion-immune (MI) solution to dynamic CT myocardial perfusion measurement, in the presence of motion without image registration. The MI perfusion technique was retrospectively validated in six swine (37.3 ± 7.5 kg) with a motion-susceptible (MS) perfusion technique performed for comparison. In each swine, varying severities of stenoses were generated in the left anterior descending (LAD) coronary artery using a balloon under intracoronary adenosine stress, followed by contrast-enhanced imaging with 20 consecutive volume scans per stenosis. Two volume scans were then systematically selected from each acquisition for both MI and MS perfusion measurement, where the resulting LAD and left circumflex (LCx) measurements were compared to reference microsphere perfusion measurements using regression and diagnostic performance analysis. The MI (PMI) and microsphere (PMICRO) perfusion measurements were related through regression by PMI = 0.98 PMICRO + 0.03 (r = 0.97), while the MS (PMS) and microsphere (PMICRO) perfusion measurements were related by PMS = 0.62 PMICRO + 0.15 (r = 0.89). The accuracy of the MI and MS techniques in detecting functionally significant stenosis was 93% and 84%, respectively. The motion-immune (MI) perfusion technique provides accurate myocardial perfusion measurement in the presence of motion without image registration.
Influence of the intertropical convergence zone on early cretaceous plant distribution in the South Atlantic
Authors: de A. Carvalho Marcelo , Lana Cecília C. , Sá Natália P. , Santiago Gustavo , Giannerini Michelle C. S. , Bengtson Peter 
Published: July 2022

AbstractThe influence of the Intertropical Convergence Zone (ITCZ) in the emerging South Atlantic region during the late Aptian (Early Cretaceous) is reflected in the spatio-temporal distribution of plant communities recorded in eight Brazilian sedimentary basins. The distribution of the bioclimatic groups of hygrophytes, hydrophytes, tropical lowland flora, upland flora, and xerophytes was quantified using pollen and spores. A predominance of xerophytes from the tropical xerophytic shrubland biome characterized the pre-evaporitic, evaporitic, and post-evaporitic paleoclimatic phases, in particular the evaporitic phase. The region experienced humidity events in the pre-evaporitic and post- evaporitic phases, especially near the paleoequator, where the tropical rainforest biome with two phytophysiognomies (lowland and montane rainforests) prevailed. Increasing humidity had a positive effect on plant diversity.
Relationship between anatomical characteristics and personality traits in Lipizzan horses
Authors: Debeljak Nataša , Košmerlj Aljaž , Altimiras Jordi , Šemrov Manja Zupan 
Published: July 2022

AbstractWe tested 35 Lipizzan horses older than 5 years, ridden and healthy in three behavioural tests (handling, fear-reaction, and target training test). Physiological (heart rate and heart rate variability) and anatomical measurements (120 head and body distances and angles) were collected to validate parameters that reliably inform on handling/cooperation, fear/exploration and trainability in horses. Utilizing a standard clustering methodology on the behavioural data, we identified four general types of responses and categorised an individual as intermediate, low fearful, horses with low cooperation or low trainability. We additionally analysed the head morphology following Tellington-Jones and Taylor recommendations and correlated the measurements with data from a horse personality questionnaire. Although allocation to a particular personality group was not associated with these two methods, these groups differed in six anatomical characteristics of head and body. Regardless of the group, our results indicated that shorter horses (<75.9 cm) with a wider muzzle (>10.5 cm) are trustworthy, less fearful and easier to handle and train. We also demonstrated that horses with stronger legs and a wider base of the head have a lower heart rate when exposed to the second trial of the handling test.