bluuebunny/crossref_metadata_2025_split huggingface dataset:
Effects of winter pulsed warming and snowmelt on soil nitrogen cycling in agricultural soils: A lysimeter study
Authors: Green Danielle , Rezanezhad Fereidoun , Jordan Sean , Wagner-Riddle Claudia , Henry Hugh A. L. , Slowinski Stephanie , Van Cappellen Philippe 
Published: October 2022

In cold regions, climate change is expected to result in warmer winter temperatures and increased temperature variability. Coupled with changing precipitation regimes, these changes can decrease soil insulation by reducing snow cover, exposing soils to colder temperatures and more frequent and extensive soil freezing and thawing. Freeze-thaw events can exert an important control over winter soil processes and the cycling of nitrogen (N), with consequences for soil health, nitrous oxide (N2O) emissions, and nearby water quality. These impacts are especially important for agricultural soils and practices in cold regions. We conducted a lysimeter experiment to assess the effects of winter pulsed warming, soil texture, and snow cover on N cycling in agricultural soils. We monitored the subsurface soil temperature, moisture, and porewater geochemistry together with air temperature, precipitation, and N2O fluxes in four agricultural field-controlled lysimeter systems (surface area of 1 m2 and depth of 1.5 m) at the University of Guelph’s Elora Research Station over one winter (December 2020 to April 2021). The lysimeters featured two soil types (loamy sand and silt loam) which were managed under a corn-soybean-wheat rotation with cover crops. Additionally, ceramic infrared heaters located above two of the lysimeters were turned on after each snowfall event to melt the snow and then turned off to mimic snow-free winter conditions with increased soil freezing. Porewater samples collected from five depths in the lysimeters were analyzed for total dissolved nitrogen (TDN), nitrate (NO3−), nitrite (NO2−), and ammonium (NH4+). N2O fluxes were measured using automated soil gas chambers installed on each lysimeter. The results from the snow removed lysimeters were compared to those of lysimeters without heaters (with snow). As expected, the removal of the insulating snow cover resulted in more intense soil freeze-thaw events, causing increased dissolved N loss from the lysimeter systems as N2O (from the silt loam system) and via NO3− leaching (from the loamy sand system). In the silt loam lysimeter, we attribute the freeze thaw-enhanced N2O fluxes to de novo processes rather than gas build up and release. In the loamy sand lysimeter, we attribute the increased NO3− leaching to the larger pore size and therefore lower water retention capacity of this soil type. Overall, our study illustrates the important role of winter snow cover dynamics and soil freezing in modulating the coupled responses of soil moisture, temperature, and N cycling.
The role of a cuproptosis-related prognostic signature in colon cancer tumor microenvironment and immune responses
Authors: Xu Chenyang , Liu Yonghao , Zhang Yuxi , Gao Ling 
Published: October 2022

Background: Colon adenocarcinoma (COAD) is a common malignant tumor of the digestive tract with poor clinical outcomes. Cuproptosis is a novel cell death mechanism and linked to mitochondrial respiration. However, the role of cuproptosis in colon cancer tumor microenvironment (TME) and immune responses remains unknown.Methods: We conducted difference analysis to identify the differential expressed cuproptosis-related genes (CRGs). According to the CRGs, the TCGA-COAD samples were categorized using consensus clustering. The LASSO regression analysis was utilized to develop the cuproptosis-related signature. We then verified the model reliability by Kaplan–Meier, PCA, and ROC analysis. The GES39582 cohort served as the validation set. GO and KEGG functional analyses were conducted to investigate the underlying mechanism. We compared the infiltration levels of immune cells, the expression levels of immune checkpoints, and microsatellite instability (MSI) status between the high- and low-risk groups. Additionally, the relationships between the risk signature and immune cells and cancer stem cell (CSC) were analyzed.Results: Finally, we identified 9 differentially expressed CRGs in COAD. According to the expression of CRGs, the TCGA-COAD samples were separated into two clusters. The 11-gene signature was established by LASSO, and it had excellent predictive power for COAD prognosis. Besides, we used the GSE39582 cohort to validate the prognostic value of the model. GO and KEGG results demonstrated that the survival differences between two risk groups was mainly linked to the extracellular matrix (ECM). Further immune characterization analysis showed the significant differences in the immune cell infiltration and immune responses between two risk groups.Conclusion: Overall, the novel cuproptosis-related signature was able to accurately predict COAD prognosis and played important roles in COAD tumor microenvironment and immune responses.
In-situ long-period monitoring of suspended particulate matter dynamics in deep sea with digital video images
Authors: Wang Hui , Hu Cong , Feng Xuezhi , Ji Chunsheng , Jia Yonggang 
Published: October 2022

Suspended particulate matter (SPM) plays an important role in material transport, deposition, resuspension and the function of benthic communities’ processes in deep sea. SPM concentration data is usually indirectly measured by optical/acoustic sensors. However, converting these sensors’ signal to SPM concentration is associated with a number of uncertainties, which will lead to mis-estimation of the results. Some researchers recommend combining several optical/acoustic sensors to determine SPM concentration. However, due to the lack of corresponding video images, the interpretation of significant mismatch signals recorded by different sensors is subjective. Consequently, a better understanding of long-period SPM dynamics, especially in deep sea, is still a challenge. In this study, we seek to monitor the dynamics of SPM in deep sea, by firstly obtaining in-situ digital video images at a water depth of 1450 m on the northern slope of South China Sea in 2020, and secondly developing a digital image processing method to process the in-situ monitoring data. In this method, we defined an image signal which was the ratio between the area of the SPM and that of the total image, to characterize the SPM concentration. A linear regression model of the image signal and SPM concentration was established (R2 = 0.72). K-fold cross-validation showed that the performance of the model was well. We calculated the SPM concentration derived from image signal, and manually classified SPM into three distinct morphological groups. The long-period observation revealed that numerous aggregates existed in deep sea. The change of SPM concentration and morphology under hydrodynamics was synchronous. When current speed equaled to or exceeded 0.15 m/s, there was a significantly increase in SPM concentration and size. However, such increase was episodic. When current speed decreased, they will also decrease. In addition, we compared the image signal with the optical/acoustic backscattering signal, analyzed the mismatch period among these three signals. We found that the optical backscatter signal can’t accurately reflect the SPM concentration during the mismatch period. To our best knowledge, this is the first time that the in-situ digital video images were used to analyze the dynamics of SPM in deep sea.
Can nirmatrelvir/ritonavir treatment shorten the duration of COVID-19 isolation?
Authors: Kim Haein , Yang Jeong-Sun , Ko Jae-Hoon , Lee Myungsun , Lee Joo-Yeon , Park Sehee , Kim Jun-Won , Shin Younmin , Lee Jung-Min , Na Yoo Jin , Park Byoung Kwon , Kim Hyungjin , Lee Young Ho , Yang Jinyoung , Huh Kyungmin , Cho Sun Young , Kang Cheol-In , Chung Doo Ryeon , Peck Kyong Ran 
Published: October 2022

BackgroundThe impact of nirmatrelvir/ritonavir treatment on shedding of viable virus in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is unclear.MethodsA prospective cohort study evaluating mildly ill COVID-19 patients was conducted. Virologic responses were compared between nirmatrelvir/ritonavir-treatment and supportive care groups. Risk factors and relevant clinical factors for shedding of viable virus were investigated.ResultsA total of 80 COVID-19 patients were enrolled and 222 sputum specimens were collected. Ten patients were dropped during follow-up, and 33 patients in the nirmatrelvir/ritonavir and 37 in the supportive care groups were compared. The median age was 67 years, and 67% were male. Clinical characteristics were similar between groups. Viral loads decreased significantly faster in the nirmatrelvir/ritonavir group compared with the supportive care group (P &lt; 0.001), and the slope was significantly steeper (–2.99 ± 1.54 vs. –1.44 ± 1.52; P &lt; 0.001). The duration of viable virus shedding was not statistically different between groups. In the multivariable analyses evaluating all collected specimens, male gender (OR 2.51, 95% CI 1.25–5.03, P = 0.010), symptom score (OR 1.41, 95% CI 1.07–1.87, P = 0.015), days from symptom onset (OR 0.72, 95% CI 0.59–0.88, P = 0.002), complete vaccination (OR 0.09, 95% CI 0.01–0.87, P = 0.038), and BA.2 subtype (OR 0.49, 95% CI 0.26–0.91, P = 0.025) were independently associated with viable viral shedding, while nirmatrelvir/ritonavir treatment was not.ConclusionNirmatrelvir/ritonavir treatment effectively reduced viral loads of SARS-CoV-2 Omicron variants but did not decrease the duration of viable virus shedding.
Assessment of 99mTc-NTP 15-5 uptake on cartilage, a new proteoglycan tracer: Study protocol for a phase I trial (CARSPECT)
Authors: Thivat Emilie , Chanchou Marion , Mathieu Sylvain , Levesque Sophie , Billoux Tommy , Auzeloux Philippe , Sas Nicolas , Molnar Ioana , Jouberton Elodie , Rouanet Jacques , Fois Giovanna , Maigne Lydia , Galmier Marie-Josephe , Penault-Llorca Frédérique , Miot-Noirault Elisabeth , Durando Xavier , Cachin Florent 
Published: October 2022

Background99mTc-NTP 15-5 is a SPECT radiotracer targeting proteoglycans (PG), components of the cartilaginous extracellular matrix. Imaging of PGs would be useful for the early detection of cartilage disorders (osteoarthritis, arthritis and chondrosarcoma, Aromatase Inhibitor associated arthralgia (AIA) in breast cancer), and the follow-up of patients under treatment. According to preclinical study results, 99mTc-NTP 15-5, is a good candidate for a specific functional molecular imaging of joints. We intend to initiate a first in-human study to confirm and quantify 99mTc-NTP 15-5 uptake in healthy joints.MethodsAs the clinical development of this radiotracer would be oriented toward the functional imaging of joint pathologies, we have chosen to include patients with healthy joints (unilateral osteoarthritis of the knee or breast cancer with indication of AI treatment). This phase I study will be an open-label, multicenter, dose-escalation trial of a radiopharmaceutical orientation to determine the recommended level of activity of 99mTc-NTP 15-5 to obtain the best joint tracer contrasts on images, without dose limiting toxicity (DLT). The secondary objectives will include the study of the pharmacology, biodistribution (using planar whole body and SPECT-CT acquisitions), toxicity, and dosimetry of this radiotracer. The dose escalation with 3 activity levels (5, 10, and 15 MBq/kg), will be conditioned by the absence at the previous level of DLT and of a visualized tracer accumulation on more than 80% of healthy joints as observed on scintigraphy performed at ≤ 2 h post-injection.DiscussionThis first in-human phase I trial will be proof-of-concept of the relevance of 99mTc-NTP 15-5 as a cartilage tracer, with the determination of the optimal methodology (dose and acquisition time) to obtain the best contrast to provide a functional image of joints with SPECT-CT.Trial registration numberClinicaltrials.gov: NCT04481230. Identifier in French National Agency for the Safety of Medicines and Health Products (ANSM): N°EudraCT 2020-000495-37.
Antigenicity is preserved with fixative solutions used in human gross anatomy: A mice brain immunohistochemistry study
Authors: Frigon Eve-Marie , Dadar Mahsa , Boire Denis , Maranzano Josefina 
Published: October 2022

BackgroundHistology remains the gold-standard to assess human brain biology, so ex vivo studies using tissue from brain banks are standard practice in neuroscientific research. However, a larger number of specimens could be obtained from gross anatomy laboratories. These specimens are fixed with solutions appropriate for dissections, but whether they also preserve brain tissue antigenicity is unclear. Therefore, we perfused mice brains with solutions used for human body preservation to assess and compare the tissue quality and antigenicity of the main cell populations.Materials and methodsTwenty-eight C57BL/6J mice were perfused with 4% formaldehyde (FAS, N = 9), salt-saturated solution (SSS, N = 9), and alcohol solution (AS, N = 10). The brains were cut into 40 μm sections for antigenicity analysis and were assessed by immunohistochemistry of four antigens: neuronal nuclei (NeuN), glial fibrillary acidic protein (GFAP astrocytes), ionized calcium-binding adaptor molecule 1 (Iba1-microglia), and myelin proteolipid protein (PLP). We compared the fixatives according to multiple variables: perfusion quality, ease of manipulation, tissue quality, immunohistochemistry quality, and antigenicity preservation.ResultsThe perfusion quality was better using FAS and worse using AS. The manipulation was very poor in SSS brains. FAS- and AS-fixed brains showed higher tissue and immunohistochemistry quality than the SSS brains. All antigens were readily observed in every specimen, regardless of the fixative solution.ConclusionSolutions designed to preserve specimens for human gross anatomy dissections also preserve tissue antigenicity in different brain cells. This offers opportunities for the use of human brains fixed in gross anatomy laboratories to assess normal or pathological conditions.
New onset episodic vertigo as a presentation of vestibular neuritis
Authors: Tang Lu , Jiang Weiwei , Wang Xiaoshan 
Published: October 2022

ObjectiveVestibular neuritis (VN) is a common peripheral cause of acute vestibular syndrome, characterized by sustained vertigo and gait instability, persisting from 1 day to several weeks. With the widespread use of comprehensive vestibular function tests, patients with VN and non-sustained vertigo have drawn attention. In this study, we retrospectively analyzed the clinical presentation of patients with VN and episodic vertigo, aiming to expand the atypical clinical features of VN.MethodsThis retrospective study enrolled 58 patients with VN. Among them, 11 patients with more than 3 remissions per day, each lasting over 1 h were assigned to the episodic vertigo (EV) group, and 47 subjects without significant relief into the sustained vertigo (SV) group. Demographic information, clinical manifestations and data of supplementary examinations were collected and statistically analyzed. These patients were followed up 1 year after discharge to gather prognostic information.ResultsThe incidence of spontaneous nystagmus (SN) and proportion of severe vertigo (Dizziness Handicap Inventory questionnaire score &gt;60) in the SV group were significantly higher than those in the EV group. Spearman correlation showed that with a longer disease course, the velocity of overt saccade was smaller (p &lt; 0.05, Rs = −0.263) in all patients with VN.ConclusionThe non-sustained manifestations in VN overlap with a wider spectrum of other vestibular disorders and stroke-related vertigo, which add an additional layer of complexity to the differential diagnosis of new onset episodic vertigo. By retrospectively analyzing the clinical characteristics and vHIT parameters, our study has expounded on the atypical features and potential pathophysiological mechanism of episodic syndromes in VN. VOR gain and saccades measured by vHIT could be reliable indicators for vestibular rehabilitation process.
Non-contact neuromodulation of the human autonomic nervous system function via different odors: Sex, menstrual cycle, and odor dose- and duration-specific effects
Authors: Maharjan Ashim , Khwaounjoo Prashanna , Peng Mei , Cakmak Yusuf Ozgur 
Published: October 2022

In recent decades, it has been uncovered that the autonomic nervous system (ANS) can be influenced using non-contact neuromodulation via odor stimulation. Increasing parasympathetic-vagal activation of the ANS is integral to improving the sympathovagal balance between the sympathetic- and parasympathetic nervous systems, which is often imbalanced in several chronic inflammatory disorders, such as rheumatoid arthritis and inflammatory bowel diseases. Although research into olfactory stimulation has been observed on the ANS, it is still lacking in the exploration of odor concentration and odor-specific effects. This is particularly the case as research has not utilized specified tools, such as the olfactometer to provide precise odor delivery. Furthermore, no research has compared the results in separate sex cohorts to investigate the role of sex or the menstrual stage on the subsequent interactions. In this study, we investigated the olfactory stimulation effects of four natural odors (mushroom, lavender, jasmine, and rose) in three concentrations (low, moderate, and high) on the ANS. To observe activity from the ANS, we used an electrocardiogram (ECG) based heart rate variability (HRV) and eye-tracker technology (pupil diameter). We found for the first time in literature that there were acute dose- and duration-specific odor effects of odors on the ANS. We also found sex and menstrual cycle effects in this interaction. Furthermore, there were stark distinctions in sympathovagal activity dependent ANS activation (HRV) in comparison to the oculomotor nerve-parasympathetic/cervical sympathetic nerves dependent ANS responses (pupil diameter). Sympathovagal activity dependent HRV showed odor, sex, and menstrual-stage interactions in both divisions of the ANS while the pupil responses only indicated increased sympathetic activation. These results shed light on the use of odor-specific stimulation to modulate the ANS activity in the context of sex and the menstrual stage. Future studies should be performed using a chronic odor delivery design to investigate the long-term effects of odors on the ANS.Clinical trial registrationAustralian New Zealand Clinical Trials Registry, identifier [ACTRN12622000415707].
Expression and potential role of FOSB in glioma
Authors: Qi Min , Sun Le-an , Zheng Lan-rong , Zhang Jia , Han Yan-ling , Wu Feng , Zhao Jian , Niu Wen-hao , Fei Mao-xing , Jiang Xiao-chun , Zhou Meng-liang 
Published: October 2022

BackgroundFOSB is reported to be an oncogene in a variety of tumors. However, the expression and role of FOSB in glioma remain obscure. In this study, we aimed to explore the expression of FOSB in glioma and its biological role in glioblastoma multiforme (GBM).MethodsWestern blot, immunohistochemical staining, and quantitative real-time polymerase chain reaction (RT-qPCR) were used to detect the expression of FOSB in clinical samples. FOSB was knocked down in cells to determine the effects of FOSB on the phenotypic changes of tumors by plate cloning, CCK-8 assay, and Transwell assay. Finally, subcutaneous tumorigenesis in nude mice was used to observe the tumorigenesis of glioma cell lines after the knockdown of the FOSB gene.ResultsFOSB expression was higher in glioma compared with normal brain tissue. After the downregulation of FOSB, the expression of cleaved caspase-3 increased. Plate cloning and CCK-8 experiments showed that the proliferation of glioma cell lines decreased. The Transwell assay demonstrated that the glioblastoma cell lines had lower migration ability after the knockdown of FOSB. Finally, the tumor volume of U87 glioma cells in group sh-FOSB was smaller than that in the control group. The TUNEL staining in vitro showed that the apoptosis of sh-FOSB glioma cells increased.ConclusionFOSB was highly expressed in glioma tissues. The viability of glioma cells decreased, and the ability of glioma cells to proliferate and migrate was reduced when FOSB was downregulated. Hence, FOSB may promote the development and migration of gliomas.
Dual inhibition of BET and HAT/p300 suppresses colorectal cancer via DR5- and p53/PUMA-mediated cell death
Authors: Kuang Chaoyuan , Tong Jingshan , Ermine Kaylee , Cai Manbo , Dai Fujun , Hao Suisui , Giles Francis , Huang Yi , Yu Jian , Zhang Lin 
Published: October 2022

BackgroundColorectal cancer (CRC) frequently has a dysregulated epigenome causing aberrant up-regulation of oncogenes such as c-MYC. Bromodomain and extra-terminal domain (BET) proteins and histone acetyltransferases (HAT) are epigenetic regulatory proteins that create and maintain epigenetic states supporting oncogenesis. BET inhibitors and HAT inhibitors are currently being investigated as cancer therapeutics due to their ability to suppress cancer-promoting epigenetic modifiers. Due to the extensive molecular crosstalk between BET proteins and HAT proteins, we hypothesized that dual inhibition of BET and HAT could more potently inhibit CRC cells than inhibition of each individual protein.MethodsWe investigated the activity and mechanisms of a dual BET and HAT inhibitor, NEO2734, in CRC cell lines and mouse xenografts. MTS, flow cytometry, and microscopy were used to assess cell viability. qPCR, Western blotting, and immunofluorescent staining were used to assess mechanisms of action.ResultsWe found that NEO2734 more potently suppresses CRC cell growth than first generation BET inhibitors, regardless of the status of common CRC driver mutations. We previously showed that BET inhibitors upregulate DR5 to induce extrinsic apoptosis. In the current study, we show that NEO2734 treatment induces CRC cell apoptosis via both the intrinsic and extrinsic apoptosis pathways. NEO2734 increases p53 expression and subsequently increased expression of the p53-upregulated mediator of apoptosis (PUMA), which is a critical mechanism for activating intrinsic apoptosis. We demonstrate that inhibition of either the intrinsic or extrinsic branches of apoptosis partially rescues CRC cells from NEO2734 treatment, while the dual inhibition of both branches of apoptosis more strongly rescues CRC cells from NEO2734 treatment. Finally, we show that NEO2734 monotherapy is able to suppress tumor growth in CRC xenografts by inducing apoptosis.ConclusionsOur study demonstrates NEO2734 potently suppresses CRC cells in vitro and in vivo by simultaneously upregulating PUMA and DR5 to induce cell death. Further studies of NEO2734 for treating CRC are warranted.