bluuebunny/crossref_metadata_2025_split huggingface dataset:
The Availability of Limestone and Other Raw Materials for Ocean Alkalinity Enhancement
Authors: Caserini Stefano , Storni Niccolò , Grosso Mario 
Published: May 2022

AbstractThe work assesses the availability and localizations of different raw materials suitable for ocean alkalinity enhancement (OAE), like limestone, olivine, magnesite and brucite, since several billion tons of rocky materials are needed to achieve meaningful results for carbon sequestration through OAE. Resources of carbonates are immense and widespread around all continents. Availability of pure carbonates is still very large (outcrop area 4.1 million km2) and is not a constraint for the large‐scale development of OAE. Outcrops of pure carbonates within 10 km from the coastline and below bare ground or scrub/shrub, preferred for the logistics of exploitation, account for about 70,000 km2, and could provide about 5,000 Gt of limestone. These values increase by a factor of 3 and 8 within 50 and 100 km from the coastline, respectively. Potential resources of olivine, less easily identifiable from the geological data, are estimated in the order of a few hundred billion tons and could provide only a minor contribution to ocean‐based carbon removal strategies. A comparison with the current level of world extraction of mineral raw materials is also provided. The annual production of limestone, estimated to be more than 6.6 Gt from deposits scattered all around the world, is about 9% of the world production of mineral raw materials (around 44 Gt yr−1), and is of the same order of magnitude as coal (7.3 Gt yr−1). The annual productions of magnesite (29 Mt yr−1), olivine (8.4 Mt yr−1) and brucite (1.5 Mt yr−1) are two orders of magnitude lower.
Modern Eastern Canadian Arctic Lake Water Isotopes Exhibit Latitudinal Patterns in Inflow Seasonality and Minimal Evaporative Enrichment
Authors: Gorbey D. B. , Thomas E. K. , Sauer P. E. , Raynolds M. K. , Miller G. H. , Corcoran M. C. , Cowling O. C. , Crump S. E. , Lovell K. , Raberg J. H. 
Published: May 2022

AbstractLacustrine δ2H and δ18O isotope proxies are powerful tools for reconstructing past climate and precipitation changes in the Arctic. However, robust paleoclimate record interpretations depend on site‐specific lake water isotope systematics, which are poorly described in the eastern Canadian Arctic due to insufficient modern lake water isotope data. We use modern lake water isotopes (δ18O and δ2H) collected between 1994–1997 and 2017–2021 from a transect of sites spanning a Québec‐to‐Ellesmere Island gradient to evaluate the effects of inflow seasonality and evaporative enrichment on the δ2H and δ18O composition of lake water. Four lakes near Iqaluit, Nunavut sampled biweekly through three ice‐free seasons reflect mean annual precipitation isotopes with slight evaporative enrichment. In a 23° latitudinal transect of 181 lakes, through‐flowing lake water δ2H and δ18O fall along local meteoric water lines. Despite variability within each region, we observe a latitudinal pattern: southern lakes reflect mean annual precipitation isotopes, whereas northern lakes reflect summer‐biased precipitation isotopes. This pattern suggests that northern lakes are more fully flushed with summer precipitation, and we hypothesize that this occurs because the ratio of runoff to precipitation increases with latitude as vegetation cover decreases. Therefore, proxy records from through‐flowing lakes in this region should reflect precipitation isotopes with minimal influence of evaporation, but vegetation changes in lake catchments across a latitudinal transect and through geologic time may influence the seasonality of lake water isotopic compositions. Thus, we recommend that future lake water isotope proxy records are considered in context with temperature and ecological proxy records.
Inferring intelligence of ancient people based on modern genomic studies
Authors: Dauyey Kaisar , Saitou Naruya 
Published: May 2022

AbstractQuantification of ancient human intelligence has become possible with recent advances in polygenic prediction. Intelligence is a complex trait that has both environmental and genetic components and high heritability. Large-scale genome-wide association studies based on ~270,000 individuals have demonstrated highly significant single-nucleotide polymorphisms (SNPs) associated with intelligence in present-day humans. We utilized those previously reported 12,037 SNPs to estimate a genetic component of intelligence in ancient Funadomari Jomon individual from 3700 years BP as well as four individuals of Afanasievo nuclear family from about 4100 years BP and who are considered anatomically modern humans. We have demonstrated that ancient individuals could have been not inferior in intelligence compared to present-day humans through assessment of the genetic component of intelligence. We have also confirmed that alleles associated with intelligence tend to spread equally between ancestral and derived origin suggesting that intelligence may be a neutral trait in human evolution.
The Rho guanosine nucleotide exchange factors Vav2 and Vav3 modulate epidermal stem cell function
Authors: Lorenzo-Martín L. Francisco , Menacho-Márquez Mauricio , Fernández-Parejo Natalia , Rodríguez-Fdez Sonia , Pascual Gloria , Abad Antonio , Crespo Piero , Dosil Mercedes , Benitah Salvador A. , Bustelo Xosé R. 
Published: May 2022

AbstractIt is known that Rho GTPases control different aspects of the biology of skin stem cells (SSCs). However, little information is available on the role of their upstream regulators under normal and tumorigenic conditions in this process. To address this issue, we have used here mouse models in which the activity of guanosine nucleotide exchange factors of the Vav subfamily has been manipulated using both gain- and loss-of-function strategies. These experiments indicate that Vav2 and Vav3 regulate the number, functional status, and responsiveness of hair follicle bulge stem cells. This is linked to gene expression programs related to the reinforcement of the identity and the quiescent state of normal SSCs. By contrast, in the case of cancer stem cells, they promote transcriptomal programs associated with the identity, activation state, and cytoskeletal remodeling. These results underscore the role of these Rho exchange factors in the regulation of normal and tumor epidermal stem cells.
Analysis of the metabolic proteome of lung adenocarcinomas by reverse-phase protein arrays (RPPA) emphasizes mitochondria as targets for therapy
Authors: Torresano Laura , Santacatterina Fulvio , Domínguez-Zorita Sonia , Nuevo-Tapioles Cristina , Núñez-Salgado Alfonso , Esparza-Moltó Pau B. , González-Llorente Lucía , Romero-Carramiñana Inés , Núñez de Arenas Cristina , Sánchez-Garrido Brenda , Nájera Laura , Salas Clara , Provencio Mariano , Cuezva José M. 
Published: May 2022

AbstractLung cancer is the leading cause of cancer-related death worldwide despite the success of therapies targeting oncogenic drivers and immune-checkpoint inhibitors. Although metabolic enzymes offer additional targets for therapy, the precise metabolic proteome of lung adenocarcinomas is unknown, hampering its clinical translation. Herein, we used Reverse Phase Protein Arrays to quantify the changes in enzymes of glycolysis, oxidation of pyruvate, fatty acid metabolism, oxidative phosphorylation, antioxidant response and protein oxidative damage in 128 tumors and paired non-tumor adjacent tissue of lung adenocarcinomas to profile the proteome of metabolism. Steady-state levels of mitochondrial proteins of fatty acid oxidation, oxidative phosphorylation and of the antioxidant response are independent predictors of survival and/or of disease recurrence in lung adenocarcinoma patients. Next, we addressed the mechanisms by which the overexpression of ATPase Inhibitory Factor 1, the physiological inhibitor of oxidative phosphorylation, which is an independent predictor of disease recurrence, prevents metastatic disease. We highlight that IF1 overexpression promotes a more vulnerable and less invasive phenotype in lung adenocarcinoma cells. Finally, and as proof of concept, the therapeutic potential of targeting fatty acid assimilation or oxidation in combination with an inhibitor of oxidative phosphorylation was studied in mice bearing lung adenocarcinomas. The results revealed that this therapeutic approach significantly extended the lifespan and provided better welfare to mice than cisplatin treatments, supporting mitochondrial activities as targets of therapy in lung adenocarcinoma patients.
Halting ErbB-2 isoforms retrograde transport to the nucleus as a new theragnostic approach for triple-negative breast cancer
Authors: Madera Santiago , Izzo Franco , Chervo María F. , Dupont Agustina , Chiauzzi Violeta A. , Bruni Sofia , Petrillo Ezequiel , Merin Sharon S. , De Martino Mara , Montero Diego , Levit Claudio , Lebersztein Gabriel , Anfuso Fabiana , Roldán Deamicis Agustina , Mercogliano María F. , Proietti Cecilia J. , Schillaci Roxana , Elizalde Patricia V. , Cordo Russo Rosalía I. 
Published: May 2022

AbstractTriple-negative breast cancer (TNBC) is clinically defined by the absence of estrogen and progesterone receptors and the lack of membrane overexpression or gene amplification of receptor tyrosine kinase ErbB-2/HER2. Due to TNBC heterogeneity, clinical biomarkers and targeted therapies for this disease remain elusive. We demonstrated that ErbB-2 is localized in the nucleus (NErbB-2) of TNBC cells and primary tumors, from where it drives growth. We also discovered that TNBC expresses both wild-type ErbB-2 (WTErbB-2) and alternative ErbB-2 isoform c (ErbB-2c). Here, we revealed that the inhibitors of the retrograde transport Retro-2 and its cyclic derivative Retro-2.1 evict both WTErbB-2 and ErbB-2c from the nucleus of BC cells and tumors. Using BC cells from several molecular subtypes, as well as normal breast cells, we demonstrated that Retro-2 specifically blocks proliferation of BC cells expressing NErbB-2. Importantly, Retro-2 eviction of both ErbB-2 isoforms from the nucleus resulted in a striking growth abrogation in multiple TNBC preclinical models, including tumor explants and xenografts. Our mechanistic studies in TNBC cells revealed that Retro-2 induces a differential accumulation of WTErbB-2 at the early endosomes and the plasma membrane, and of ErbB-2c at the Golgi, shedding new light both on Retro-2 action on endogenous protein cargoes undergoing retrograde transport, and on the biology of ErbB-2 splicing variants. In addition, we revealed that the presence of a functional signal peptide and a nuclear export signal (NES), both located at the N-terminus of WTErbB-2, and absent in ErbB-2c, accounts for the differential subcellular distribution of ErbB-2 isoforms upon Retro-2 treatment. Our present discoveries provide evidence for the rational repurposing of Retro-2 as a novel therapeutic agent for TNBC.
Mitochondrial autophagy: molecular mechanisms and implications for cardiovascular disease
Authors: Li Anqi , Gao Meng , Liu Bilin , Qin Yuan , chen Lei , Liu Hanyu , Wu Huayan , Gong Guohua 
Published: May 2022

AbstractMitochondria are highly dynamic organelles that participate in ATP generation and involve calcium homeostasis, oxidative stress response, and apoptosis. Dysfunctional or damaged mitochondria could cause serious consequences even lead to cell death. Therefore, maintaining the homeostasis of mitochondria is critical for cellular functions. Mitophagy is a process of selectively degrading damaged mitochondria under mitochondrial toxicity conditions, which plays an essential role in mitochondrial quality control. The abnormal mitophagy that aggravates mitochondrial dysfunction is closely related to the pathogenesis of many diseases. As the myocardium is a highly oxidative metabolic tissue, mitochondria play a central role in maintaining optimal performance of the heart. Dysfunctional mitochondria accumulation is involved in the pathophysiology of cardiovascular diseases, such as myocardial infarction, cardiomyopathy and heart failure. This review discusses the most recent progress on mitophagy and its role in cardiovascular disease.
Targeting double-strand break indel byproducts with secondary guide RNAs improves Cas9 HDR-mediated genome editing efficiencies
Authors: Bodai Zsolt , Bishop Alena L. , Gantz Valentino M. , Komor Alexis C. 
Published: May 2022

AbstractProgrammable double-strand DNA breaks (DSBs) can be harnessed for precision genome editing through manipulation of the homology-directed repair (HDR) pathway. However, end-joining repair pathways often outcompete HDR and introduce insertions and deletions of bases (indels) at the DSB site, decreasing precision outcomes. It has been shown that indel sequences for a given DSB site are reproducible and can even be predicted. Here, we report a general strategy (the “double tap” method) to improve HDR-mediated precision genome editing efficiencies that takes advantage of the reproducible nature of indel sequences. The method simply involves the use of multiple gRNAs: a primary gRNA that targets the wild-type genomic sequence, and one or more secondary gRNAs that target the most common indel sequence(s), which in effect provides a “second chance” at HDR-mediated editing. This proof-of-principle study presents the double tap method as a simple yet effective option for enhancing precision editing in mammalian cells.
An Archimedes' screw for light
Authors: Galiffi Emanuele , Huidobro Paloma A. , Pendry J. B. 
Published: May 2022

AbstractAn Archimedes’ Screw captures water, feeding energy into it by lifting it to a higher level. We introduce the first instance of an optical Archimedes’ Screw, and demonstrate how this system is capable of capturing light, dragging it and amplifying it. We unveil new exact analytic solutions to Maxwell’s Equations for a wide family of chiral space-time media, and show their potential to achieve chirally selective amplification within widely tunable parity-time-broken phases. Our work, which may be readily implemented via pump-probe experiments with circularly polarized beams, opens a new direction in the physics of time-varying media by merging the rising field of space-time metamaterials and that of chiral systems, and offers a new playground for topological and non-Hermitian photonics, with potential applications to chiral spectroscopy and sensing.
The evolution of trait variance creates a tension between species diversity and functional diversity
Authors: Barabás György , Parent Christine , Kraemer Andrew , Van de Perre Frederik , De Laender Frederik 
Published: May 2022

AbstractIt seems intuitively obvious that species diversity promotes functional diversity: communities with more plant species imply more varied plant leaf chemistry, more species of crops provide more kinds of food, etc. Recent literature has nuanced this view, showing how the relationship between the two can be modulated along latitudinal or environmental gradients. Here we show that even without such effects, the evolution of functional trait variance can erase or even reverse the expected positive relationship between species- and functional diversity. We present theory showing that trait-based eco-evolutionary processes force species to evolve narrower trait breadths in more tightly packed, species-rich communities, in their effort to avoid competition with neighboring species. This effect is so strong that it leads to an overall reduction in trait space coverage whenever a new species establishes. Empirical data from land snail communities on the Galápagos Islands are consistent with this claim. The finding that the relationship between species- and functional diversity can be negative implies that trait data from species-poor communities may misjudge functional diversity in species-rich ones, and vice versa.
Human and planetary health implications of negative emissions technologies
Authors: Cobo Selene , Galán-Martín Ángel , Tulus Victor , Huijbregts Mark A. J. , Guillén-Gosálbez Gonzalo 
Published: May 2022

AbstractMeeting the 1.5 °C target may require removing up to 1,000 Gtonne CO2 by 2100 with Negative Emissions Technologies (NETs). We evaluate the impacts of Direct Air Capture and Bioenergy with Carbon Capture and Storage (DACCS and BECCS), finding that removing 5.9 Gtonne/year CO2 can prevent <9·102 disability-adjusted life years per million people annually, relative to a baseline without NETs. Avoiding this health burden—similar to that of Parkinson’s—can save substantial externalities (≤148 US$/tonne CO2), comparable to the NETs levelized costs. The health co-benefits of BECCS, dependent on the biomass source, can exceed those of DACCS. Although both NETs can help to operate within the climate change and ocean acidification planetary boundaries, they may lead to trade-offs between Earth-system processes. Only DACCS can avert damage to the biosphere integrity without challenging other biophysical limits (impacts ≤2% of the safe operating space). The quantified NETs co-benefits can incentivize their adoption.
A negative-solvatochromic fluorescent probe for visualizing intracellular distributions of fatty acid metabolites
Authors: Kajiwara Keiji , Osaki Hiroshi , Greßies Steffen , Kuwata Keiko , Kim Ju Hyun , Gensch Tobias , Sato Yoshikatsu , Glorius Frank , Yamaguchi Shigehiro , Taki Masayasu 
Published: May 2022

AbstractMetabolic distribution of fatty acid to organelles is an essential biological process for energy homeostasis as well as for the maintenance of membrane integrity, and the metabolic pathways are strictly regulated in response to environmental stimuli. Herein, we report a fluorescent fatty acid probe, which bears an azapyrene dye that changes its absorption and emission features depending on the microenvironment polarity of the organelle into which it is transported. Owing to the environmental sensitivity of this dye, the distribution of the metabolically incorporated probe in non-polar lipid droplets, medium-polarity membranes, and the polar aqueous regions, can be visualized in different colors. Based on density scatter plots of the fluorophore, we demonstrate that the degradation of triacylglycerols in lipid droplets occurs predominantly via lipolysis rather than lipophagy in nutrition-starved hepatocytes. This tool can thus be expected to significantly advance our understanding of the lipid metabolism in living organisms.
Culling corallivores improves short-term coral recovery under bleaching scenarios
Authors: Rogers Jacob G. D. , Plagányi Éva E. 
Published: May 2022

AbstractManagement of coral predators, corallivores, is recommended to improve coral cover on tropical coral reefs under projected increasing levels of accumulated thermal stress, but whether corallivore management can improve coral cover, which is necessary for large-scale operationalisation, remains equivocal. Here, using a multispecies ecosystem model, we investigate intensive management of an invertebrate corallivore, the Crown-of-Thorns Starfish (Acanthaster cf. solaris), and show that culling could improve coral cover at sub-reef spatial scales, but efficacy varied substantially within and among reefs. Simulated thermal stress events attenuated management-derived coral cover improvements and was dependent on the level of accumulated thermal stress, the thermal sensitivity of coral communities and the rate of corallivore recruitment at fine spatial scales. Corallivore management was most effective when accumulated thermal stress was low, coral communities were less sensitive to heat stress and in areas of high corallivore recruitment success. Our analysis informs how to manage a pest species to promote coral cover under future thermal stress events.
Direct and real-time observation of hole transport dynamics in anatase TiO2 using X-ray free-electron laser
Authors: Park Sang Han , Katoch Abhishek , Chae Keun Hwa , Gautam Sanjeev , Miedema Piter , Cho Sang Wan , Kim Minseok , Wang Ru-Pan , Lazemi Masoud , de Groot Frank , Kwon Soonnam 
Published: May 2022

AbstractCarrier dynamics affects photocatalytic systems, but direct and real-time observations in an element-specific and energy-level-specific manner are challenging. In this study, we demonstrate that the dynamics of photo-generated holes in metal oxides can be directly probed by using femtosecond X-ray absorption spectroscopy at an X-ray free-electron laser. We identify the energy level and life time of holes with a long life time (230 pico-seconds) in nano-crystal materials. We also observe that trapped holes show an energy distribution in the bandgap region with a formation time of 0.3 pico-seconds and a decay time of 8.0 pico-seconds at room temperature. We corroborate the dynamics of the electrons by using X-ray absorption spectroscopy at the metal L-edges in a consistent explanation with that of the holes.
Gray wolf optimizer with bubble-net predation for modeling fluidized catalytic cracking unit main fractionator
Authors: Wang Xiaojing , Su Chengli , Wang Ning , Shi Huiyuan 
Published: May 2022

AbstractFluidized catalytic cracking unit (FCCU) main fractionator is a complex system with multivariable, nonlinear and uncertainty. Its modeling is a hard nut to crack. Ordinary modeling methods are difficult to estimate its dynamic characteristics accurately. In this work, the gray wolf optimizer with bubble-net predation (GWO_BP) is proposed for solving this complex optimization problem. GWO_BP can effectively balance the detectability and exploitability to find the optimal value faster, and improve the accuracy. The head wolf has the best fitness value in GWO. GWO_BP uses the spiral bubble predation method of whale to replace the surrounding hunting scheme of the head wolf, which enhances the global search ability and speeds up the convergence speed. And Lévy flight is applied to improve the wolf search strategy to update the positions of wolfpack for overcoming the disadvantage of easily falling into local optimum. The experiments of the basic GWO, the particle swarm optimization (PSO) and the GWO_BP are carried out with 12 typical test functions. The experimental results show that GWO_BP has the best optimization accuracy. Then, the GWO_BP is used to solve the parameter estimation problem of FCCU main fractionator model. The simulation results show that the FCCU main fractionator model established by the proposed modeling method can accurately reflect the dynamic characteristics of the real world.
Learning to simulate high energy particle collisions from unlabeled data
Authors: Howard Jessica N. , Mandt Stephan , Whiteson Daniel , Yang Yibo 
Published: May 2022

AbstractIn many scientific fields which rely on statistical inference, simulations are often used to map from theoretical models to experimental data, allowing scientists to test model predictions against experimental results. Experimental data is often reconstructed from indirect measurements causing the aggregate transformation from theoretical models to experimental data to be poorly-described analytically. Instead, numerical simulations are used at great computational cost. We introduce Optimal-Transport-based Unfolding and Simulation (OTUS), a fast simulator based on unsupervised machine-learning that is capable of predicting experimental data from theoretical models. Without the aid of current simulation information, OTUS trains a probabilistic autoencoder to transform directly between theoretical models and experimental data. Identifying the probabilistic autoencoder’s latent space with the space of theoretical models causes the decoder network to become a fast, predictive simulator with the potential to replace current, computationally-costly simulators. Here, we provide proof-of-principle results on two particle physics examples, Z-boson and top-quark decays, but stress that OTUS can be widely applied to other fields.