bluuebunny/crossref_metadata_2025_split huggingface dataset:
Liquid–liquid phase separation in tumor biology
Authors: Tong Xuhui , Tang Rong , Xu Jin , Wang Wei , Zhao Yingjun , Yu Xianjun , Shi Si 
Published: July 2022

AbstractLiquid–liquid phase separation (LLPS) is a novel principle for explaining the precise spatial and temporal regulation in living cells. LLPS compartmentalizes proteins and nucleic acids into micron-scale, liquid-like, membraneless bodies with specific functions, which were recently termed biomolecular condensates. Biomolecular condensates are executors underlying the intracellular spatiotemporal coordination of various biological activities, including chromatin organization, genomic stability, DNA damage response and repair, transcription, and signal transduction. Dysregulation of these cellular processes is a key event in the initiation and/or evolution of cancer, and emerging evidence has linked the formation and regulation of LLPS to malignant transformations in tumor biology. In this review, we comprehensively summarize the detailed mechanisms of biomolecular condensate formation and biophysical function and review the recent major advances toward elucidating the multiple mechanisms involved in cancer cell pathology driven by aberrant LLPS. In addition, we discuss the therapeutic perspectives of LLPS in cancer research and the most recently developed drug candidates targeting LLPS modulation that can be used to combat tumorigenesis.
EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces
Authors: Won Kyungho , Kwon Moonyoung , Ahn Minkyu , Jun Sung Chan 
Published: July 2022

AbstractAs attention to deep learning techniques has grown, many researchers have attempted to develop ready-to-go brain-computer interfaces (BCIs) that include automatic processing pipelines. However, to do so, a large and clear dataset is essential to increase the model’s reliability and performance. Accordingly, our electroencephalogram (EEG) dataset for rapid serial visual representation (RSVP) and P300 speller may contribute to increasing such BCI research. We validated our dataset with respect to features and accuracy. For the RSVP, the participants (N = 50) achieved about 92% mean target detection accuracy. At the feature level, we observed notable ERPs (at 315 ms in the RSVP; at 262 ms in the P300 speller) during target events compared to non-target events. Regarding P300 speller performance, the participants (N = 55) achieved about 92% mean accuracy. In addition, P300 speller performance over trial repetitions up to 15 was explored. The presented dataset could potentially improve P300 speller applications. Further, it may be used to evaluate feature extraction and classification algorithm effectively, such as for cross-subjects/cross-datasets, and even for the cross-paradigm BCI model.
3D-printed lightweight dorsal skin fold chambers from PEEK reduce chamber-related animal distress
Authors: Xie Wentao , Lorenz Matthias , Poosch Friederike , Palme Rupert , Zechner Dietmar , Vollmar Brigitte , Grambow Eberhard , Strüder Daniel 
Published: July 2022

AbstractThe dorsal skinfold chamber is one of the most important in vivo models for repetitive longitudinal assessment of microcirculation and inflammation. This study aimed to refine this model by introducing a new lightweight chamber made from polyetheretherketone (PEEK). Body weight, burrowing activity, distress, faecal corticosterone metabolites and the tilting angle of the chambers were analysed in mice carrying either a standard titanium chamber or a PEEK chamber. Data was obtained before chamber preparation and over a postoperative period of three weeks. In the early postoperative phase, reduced body weight and increased faecal corticosterone metabolites were found in mice with titanium chambers. Chamber tilting and tilting-related complications were reduced in mice with PEEK chambers. The distress score was significantly increased in both groups after chamber preparation, but only returned to preoperative values in mice with PEEK chambers. In summary, we have shown that light chambers reduce animal distress and may extend the maximum dorsal skinfold chamber observation time. Chambers made of PEEK are particularly suitable for this purpose: They are autoclavable, sufficiently stable to withstand rodent bites, inexpensive, and widely available through 3D printing.
Significant hot hand effect in the game of cricket
Authors: Ram Sumit Kumar , Nandan Shyam , Sornette Didier 
Published: July 2022

AbstractWe investigate the predictability and persistence of individual and team performance (hot-hand effect) by analyzing the complete recorded history of international cricket. We introduce an original temporal representation of performance streaks, which is suitable to be modelled as a self-exciting point process. We confirm the presence of predictability and hot-hands across the individual performance and the absence of the same in team performance and game outcome. Thus, Cricket is a game of skill for individuals and a game of chance for the teams. Our study contributes to recent historiographical debates concerning the presence of persistence in individual and collective productivity and success. The introduction of several metrics and methods can be useful to test and exploit clustering of performance in the study of human behavior and design of algorithms for predicting success.
Crystal structure of potato 14-3-3 protein St14f revealed the importance of helix I in StFDL1 recognition
Authors: Harada Ken-ichi , Furuita Kyoko , Yamashita Eiki , Taoka Ken-ichiro , Tsuji Hiroyuki , Fujiwara Toshimichi , Nakagawa Atsushi , Kojima Chojiro 
Published: July 2022

AbstractIn potato (Solanum tuberosum L.), 14-3-3 protein forms a protein complex with the FLOWERING LOCUS T (FT)-like protein StSP6A and the FD-like protein StFDL1 to activate potato tuber formation. Eleven 14-3-3 isoforms were reported in potato, designated as St14a-k. In this study, the crystal structure of the free form of St14f was determined at 2.5 Å resolution. Three chains were included in the asymmetric unit of the St14f free form crystal, and the structural deviation among the three chain structures was found on the C-terminal helix H and I. The St14f free form structure in solution was also investigated by nuclear magnetic resonance (NMR) residual dipolar coupling analysis, and the chain B in the crystal structure was consistent with NMR data. Compared to other crystal structures, St14f helix I exhibited a different conformation with larger B-factor values. Larger B-factor values on helix I were also found in the 14-3-3 free form structure with higher solvent contents. The mutation in St14f Helix I stabilized the complex with StFDL1. These data clearly showed that the flexibility of helix I of 14-3-3 protein plays an important role in the recognition of target protein.
Prospective cohort study reveals unexpected aetiologies of livestock abortion in northern Tanzania
Authors: Thomas Kate M. , Kibona Tito , Claxton John R. , de Glanville William A. , Lankester Felix , Amani Nelson , Buza Joram J. , Carter Ryan W. , Chapman Gail E. , Crump John A. , Dagleish Mark P. , Halliday Jo E. B. , Hamilton Clare M. , Innes Elisabeth A. , Katzer Frank , Livingstone Morag , Longbottom David , Millins Caroline , Mmbaga Blandina T. , Mosha Victor , Nyarobi James , Nyasebwa Obed M. , Russell George C. , Sanka Paul N. , Semango George , Wheelhouse Nick , Willett Brian J. , Cleaveland Sarah , Allan Kathryn J. 
Published: July 2022

AbstractLivestock abortion is an important cause of productivity losses worldwide and many infectious causes of abortion are zoonotic pathogens that impact on human health. Little is known about the relative importance of infectious causes of livestock abortion in Africa, including in subsistence farming communities that are critically dependent on livestock for food, income, and wellbeing. We conducted a prospective cohort study of livestock abortion, supported by cross-sectional serosurveillance, to determine aetiologies of livestock abortions in livestock in Tanzania. This approach generated several important findings including detection of a Rift Valley fever virus outbreak in cattle; high prevalence of C. burnetii infection in livestock; and the first report of Neospora caninum, Toxoplasma gondii, and pestiviruses associated with livestock abortion in Tanzania. Our approach provides a model for abortion surveillance in resource-limited settings. Our findings add substantially to current knowledge in sub-Saharan Africa, providing important evidence from which to prioritise disease interventions.
Anxiety-like behavior and microglial activation in the amygdala after acute neuroinflammation induced by microbial neuraminidase
Authors: León-Rodríguez Ana , Fernández-Arjona María del Mar , Grondona Jesús M. , Pedraza Carmen , López-Ávalos María D. 
Published: July 2022

AbstractShort-term behavioral alterations are associated with infection and aid the recovery from sickness. However, concerns have raised that sustained behavioral disturbances after acute neuroinflammation could relate to neurological diseases in the long run. We aimed to explore medium- and long-term behavioral disturbances after acute neuroinflammation in rats, using a model based on the intracerebroventricular administration of the enzyme neuraminidase (NA), which is part of some pathogenic bacteria and viruses. Neurological and behavioral assessments were performed 2 and 10 weeks after the injection of NA, and neuroinflammation was evaluated by gene expression and histology. No alterations were observed regarding basic neurological functions or locomotor capacity in NA-injected rats. However, they showed a reduction in unsupported rearing, and increased grooming and freezing behaviors, which indicate anxiety-like behavior. A principal component analysis including a larger set of parameters further supported such anxiety-like behavior. The anxiety profile was observed 2 weeks after NA-injection, but not after 10 weeks. Concomitantly, the amygdala presented increased number of microglial cells showing a morphologic bias towards an activated state. A similar but subtler tendency was observed in hypothalamic microglia located in the paraventricular nucleus. Also, in the hypothalamus the pattern recognition receptor toll-like receptor 4 (TLR4) was slightly overexpressed 2 weeks after NA injection. These results demonstrate that NA-induced neuroinflammation provokes anxiety-like behavior in the medium term, which disappears with time. Concurrent microgliosis in the amygdala could explain such behavior. Further experiments should aim to explore subtle but long-lasting alterations observed 10 weeks after NA injection, both in amygdala and hypothalamus, as well as mild behavioral changes.
Efficacy of 0.01% atropine for myopia control in a randomized, placebo-controlled trial depends on baseline electroretinal response
Authors: Chan Henry H. L. , Choi Kai Yip , Ng Alex L. K. , Choy Bonnie N. K. , Chan Jonathan Cheuk Hung , Chan Sonia S. H. , Li Serena Z. C. , Yu Wing Yan 
Published: July 2022

AbstractThis study aimed to evaluate the efficacy of 18-month 0.01% atropine in 61 myopic children (aged 7–10) and the relationship with central retinal response (by multifocal electroretinogram [mfERG]) in a double-masked randomized placebo-controlled clinical trial. Global-flash mfERG was measured at baseline, while cycloplegic spherical equivalent refraction (SER) and axial length (AL) were measured at baseline and at 6-month intervals. Annualized change in SER and AL were compared between atropine and control groups, and the relationships with baseline mfERG were evaluated. Changes in SER (−0.70 ± 0.39D vs. −0.66 ± 0.41D, p = 0.63) and AL (0.32 ± 0.16 mm vs. 0.30 ± 0.22 mm, p = 0.52) were similar in atropine and control groups. Interestingly, in the placebo group, mfERG amplitude was negatively correlated with axial elongation (Rp = −0.44, p = 0.03) as in our previous study. However, in the atropine group, an opposite trend was observed that axial elongation was positively correlated with mfERG amplitude (Ra = 0.37, p = 0.04). Annualized myopia progression demonstrated similar opposite effect between atropine and placebo groups but did not reach statistical significance. An ERG screening protocol may be warranted to identify suitable candidates to reduce the likelihood of an unfavorable treatment response by 0.01% atropine.
Quantum topology in the ultrastrong coupling regime
Authors: Downing C. A. , Toghill A. J. 
Published: July 2022

AbstractThe coupling between two or more objects can generally be categorized as strong or weak. In cavity quantum electrodynamics for example, when the coupling strength is larger than the loss rate the coupling is termed strong, and otherwise it is dubbed weak. Ultrastrong coupling, where the interaction energy is of the same order of magnitude as the bare energies of the uncoupled objects, presents a new paradigm for quantum physics and beyond. As a consequence profound changes to well established phenomena occur, for instance the ground state in an ultrastrongly coupled system is not empty but hosts virtual excitations due to the existence of processes which do not conserve the total number of excitations. The implications of ultrastrong coupling for quantum topological systems, where the number of excitations are typically conserved, remain largely unknown despite the great utility of topological matter. Here we reveal how the delicate interplay between ultrastrong coupling and topological states manifests in a one-dimensional array. We study theoretically a dimerized chain of two-level systems within the ultrastrong coupling regime, where the combined saturation and counter-rotating terms in the Hamiltonian are shown to play pivotal roles in the rich, multi-excitation effective bandstructure. In particular, we uncover unusual topological edge states, we introduce a flavour of topological state which we call an anti-edge state, and we reveal the remarkable geometric-dependent renormalizations of the quantum vaccum. Taken together, our results provide a route map for experimentalists to characterize and explore a prototypical system in the emerging field of ultrastrong quantum topology.
Large-scale cortico-cerebellar computations for horizontal and vertical vergence in humans
Authors: Mitsudo Hiroyuki , Hironaga Naruhito , Ogata Katsuya , Tobimatsu Shozo 
Published: July 2022

AbstractHorizontal and vertical vergence eye movements play a central role in binocular coordination. Neurophysiological studies suggest that cortical and subcortical regions in animals and humans are involved in horizontal vergence. However, little is known about the extent to which the neural mechanism underlying vertical vergence overlaps with that of horizontal vergence. In this study, to explore neural computation for horizontal and vertical vergence, we simultaneously recorded electrooculography (EOG) and whole-head magnetoencephalography (MEG) while presenting large-field stereograms for 29 healthy human adults. The stereograms were designed to produce vergence responses by manipulating horizontal and vertical binocular disparities. A model-based approach was used to assess neural sensitivity to horizontal and vertical disparities via MEG source estimation and the theta-band (4 Hz) coherence between brain activity and EOG vergence velocity. We found similar time-locked neural responses to horizontal and vertical disparity in cortical and cerebellar areas at around 100–250 ms after stimulus onset. In contrast, the low-frequency oscillatory neural activity associated with the execution of vertical vergence differed from that of horizontal vergence. These findings indicate that horizontal and vertical vergence involve partially shared but distinct computations in large-scale cortico-cerebellar networks.
Polymicrobial biofilms of ocular bacteria and fungi on ex vivo human corneas
Authors: Ranjith Konduri , Nagapriya Banka , Shivaji Sisinthy 
Published: July 2022

AbstractMicrobes residing in biofilms confer several fold higher antimicrobial resistances than their planktonic counterparts. Compared to monomicrobial biofilms, polymicrobial biofilms involving multiple bacteria, multiple fungi or both are more dominant in nature. Paradoxically, polymicrobial biofilms are less studied. In this study, ocular isolates of Staphylococcus aureus, S. epidermidis and Candida albicans, the etiological agents of several ocular infections, were used to demonstrate their potential to form mono- and polymicrobial biofilms both in vitro and on human cadaveric corneas. Quantitative (crystal violet and XTT methods) and qualitative (confocal and scanning electron microscopy) methods demonstrated that they form polymicrobial biofilms. The extent of biofilm formation was dependent on whether bacteria and fungi were incubated simultaneously or added to a preformed biofilm. Additionally, the polymicrobial biofilms exhibited increased resistance to different antimicrobials compared to planktonic cells. When the MBECs of different antibacterial and antifungal agents were monitored it was observed that the MBECs in the polymicrobial biofilms was either identical or decreased compared to the monomicrobial biofilms. The results are relevant in planning treatment strategies for the eye. This study demonstrates that ocular bacteria and fungi form polymicrobial biofilms and exhibit increase in antimicrobial resistance compared to the planktonic cells.
Feedback loop between hepatocyte nuclear factor 1α and endoplasmic reticulum stress mitigates liver injury by downregulating hepatocyte apoptosis
Authors: Liu Si-Ying , Rao Jian-Xu , Deng Jie , Zhang Gui-Juan , Jiang Xiao-Ling , Cheng Jing , Chen Huan , Jiang Zhi-Gang , Xu De-Lin , He Yi-Huai 
Published: July 2022

AbstractHepatocyte nuclear factor alpha (HNF1α), endoplasmic reticulum (ER) stress, and hepatocyte apoptosis contribute to severe acute exacerbation (SAE) of liver injury. Here, we explore HNF1α–ER stress-hepatocyte apoptosis interaction in liver injury. LO2, HepG2 and SK-Hep1 cells were treated with thapsigargin (TG) or tunicamycin (TM) to induce ER stress. Carbon tetrachloride (CCl4) was used to induce acute liver injury in mice. Low-dose lipopolysaccharide (LPS) exacerbated liver injury in CCl4-induced mice. Significant apoptosis, HNF1α upregulation, and nuclear factor kappa B (NF-κB) activation were observed in human-derived hepatocytes during ER stress. Knockdown of Rela, NF-κB p65, inhibited the HNF1α upregulation. Following CCl4 treatment ER stress, apoptosis, HNF1α expression and RelA phosphorylation were significantly increased in mice. HNF1α knockdown reduced activating transcription factor 4 (ATF4) expression, and aggravated ER stress as well as hepatocyte apoptosis in vivo and in vitro. The double fluorescent reporter gene assay confirmed that HNF1α regulated the transcription of ATF4 promoter. LPS aggravated CCl4-induced liver injury and reduced HNF1α, and ATF4 expression. Therefore, in combination, HNF1α and ER stress could be mutually regulated forming a feedback loop, which helps in protecting the injured liver by down-regulating hepatocyte apoptosis. Low-dose LPS aggravates hepatocyte apoptosis and promotes the SAE of liver injury by interfering with the feedback regulation of HNF1α and ER stress in acute liver injury.
Using ISU-GAN for unsupervised small sample defect detection
Authors: Guo Yijing , Zhong Linwei , Qiu Yi , Wang Huawei , Gao Fengqiang , Wen Zongheng , Zhan Choujun 
Published: July 2022

AbstractSurface defect detection is a vital process in industrial production and a significant research direction in computer vision. Although today’s deep learning defect detection methods based on computer vision can achieve high detection accuracy, they are mainly based on supervised learning. They require many defect samples to train the model, which is not compatible with the current situation that industrial defect sample is difficult to obtain and costly to label. So we propose a new unsupervised small sample defect detection model-ISU-GAN, which is based on the CycleGAN architecture. A skip connection, SE module, and Involution module are added to the Generator, enabling the feature extraction capability of the model to be significantly improved. Moreover, we propose an SSIM-based defect segmentation method that applies to GAN-based defect detection and can accurately extract defect contours without the need for redundant noise reduction post-processing. Experiments on the DAGM2007 dataset show that the unsupervised ISU-GAN can achieve higher detection accuracy and finer defect profiles with less than 1/3 of the unlabelled training data than the supervised model with the full training set. Relative to the supervised segmentation models UNet and ResUNet++ with more training samples, our model improves the detection accuracy by 2.84% and 0.41% respectively and the F1 score by 0.025 and 0.0012 respectively. In addition, the predicted profile obtained using our method is closer to the real profile than other models used for comparison.
Noisy propagation of Gaussian states in optical media with finite bandwidth
Authors: Teklu Berihu , Bina Matteo , Paris Matteo G. A. 
Published: July 2022

AbstractWe address propagation and entanglement of Gaussian states in optical media characterised by nontrivial spectral densities. In particular, we consider environments with a finite bandwidth $$J(\omega ) = J_0 \left[ \theta (\omega -\Omega ) - \theta (\omega - \Omega - \delta )\right] $$

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, and show that in the low temperature regime $$T\ll \Omega ^{-1}$$

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: (i) secular terms in the master equation may be neglected; (ii) attenuation (damping) is strongly suppressed; (iii) the overall diffusion process may be described as a Gaussian noise channel with variance depending only on the bandwidth. We find several regimes where propagation is not much detrimental and entanglement may be protected form decoherence.
Depth profiling of Cr-ITO dual-layer sample with secondary ion mass spectrometry using MeV ions in the low energy region
Authors: Barac Marko , Brajković Marko , Siketić Zdravko , Ekar Jernej , Bogdanović Radović Iva , Šrut Rakić Iva , Kovač Janez 
Published: July 2022

AbstractThis work explores the possibility of depth profiling of inorganic materials with Megaelectron Volt Secondary Ion Mass Spectrometry using low energy primary ions (LE MeV SIMS), specifically 555 keV Cu2+, while etching the surface with 1 keV Ar+ ions. This is demonstrated on a dual-layer sample consisting of 50 nm Cr layer deposited on 150 nm In2O5Sn (ITO) glass. These materials proved to have sufficient secondary ion yield in previous studies using copper ions with energies of several hundred keV. LE MeV SIMS and keV SIMS depth profiles of Cr-ITO dual-layer are compared and corroborated by atomic force microscopy (AFM) and time-of-flight elastic recoil detection analysis (TOF-ERDA). The results show the potential of LE MeV SIMS depth profiling of inorganic multilayer systems in accelerator facilities equipped with MeV SIMS setup and a fairly simple sputtering source.