bluuebunny/crossref_metadata_2025_split huggingface dataset:
Super-bridging fibrous materials for water treatment
Authors: Lapointe Mathieu , Jahandideh Heidi , Farner Jeffrey M. , Tufenkji Nathalie 
Published: April 2022

AbstractTo deal with issues of process sustainability, cost, and efficiency, we developed materials reengineered from fibers to serve as super-bridging agents, adsorbents, and ballast media. These sustainable fiber-based materials considerably increased the floc size (~6,630 µm) compared to conventional physicochemical treatment using a coagulant and a flocculant (~520 µm). The materials also reduced coagulant usage (up to 40%) and flocculant usage (up to 60%). These materials could be used in synergy with coagulants and flocculants to improve settling in existing water treatment processes and allow facilities to reduce their capital and operating costs as well as their environmental footprint. Moreover, the super-sized flocs produced using fiber-based materials (up to ~13 times larger compared to conventional treatment) enabled easy floc removal by screening, eliminating the need for a settling tank, a large and costly process unit. The materials can be effective solutions at removing classical (e.g., natural organic matter (NOM) and phosphorus) and emerging contaminants (e.g., microplastics and nanoplastics). Due to their large size, Si- and Fe-grafted fiber-based materials can be easily recovered from sludge and reused multiple times.
Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes
Authors: Ebler Jana , Ebert Peter , Clarke Wayne E. , Rausch Tobias , Audano Peter A. , Houwaart Torsten , Mao Yafei , Korbel Jan O. , Eichler Evan E. , Zody Michael C. , Dilthey Alexander T. , Marschall Tobias 
Published: April 2022

AbstractTypical genotyping workflows map reads to a reference genome before identifying genetic variants. Generating such alignments introduces reference biases and comes with substantial computational burden. Furthermore, short-read lengths limit the ability to characterize repetitive genomic regions, which are particularly challenging for fastk-mer-based genotypers. In the present study, we propose a new algorithm, PanGenie, that leverages a haplotype-resolved pangenome reference together withk-mer counts from short-read sequencing data to genotype a wide spectrum of genetic variation—a process we refer to as genome inference. Compared with mapping-based approaches, PanGenie is more than 4 times faster at 30-fold coverage and achieves better genotype concordances for almost all variant types and coverages tested. Improvements are especially pronounced for large insertions (≥50 bp) and variants in repetitive regions, enabling the inclusion of these classes of variants in genome-wide association studies. PanGenie efficiently leverages the increasing amount of haplotype-resolved assemblies to unravel the functional impact of previously inaccessible variants while being faster compared with alignment-based workflows.
Interindividual variability in transgene mRNA and protein production following adeno-associated virus gene therapy for hemophilia A
Authors: Fong Sylvia , Yates Bridget , Sihn Choong-Ryoul , Mattis Aras N. , Mitchell Nina , Liu Su , Russell Chris B. , Kim Benjamin , Lawal Adebayo , Rangarajan Savita , Lester Will , Bunting Stuart , Pierce Glenn F. , Pasi K. John , Wong Wing Yen 
Published: April 2022

AbstractFactor VIII gene transfer with a single intravenous infusion of valoctocogene roxaparvovec (AAV5-hFVIII-SQ) has demonstrated clinical benefits lasting 5 years to date in people with severe hemophilia A. Molecular mechanisms underlying sustained AAV5-hFVIII-SQ-derived FVIII expression have not been studied in humans. In a substudy of the phase 1/2 clinical trial (NCT02576795), liver biopsy samples were collected 2.6–4.1 years after gene transfer from five participants. Primary objectives were to examine effects on liver histopathology, determine the transduction pattern and percentage of hepatocytes transduced with AAV5-hFVIII-SQ genomes, characterize and quantify episomal forms of vector DNA and quantify transgene expression (hFVIII-SQ RNA and hFVIII-SQ protein). Histopathology revealed no dysplasia, architectural distortion, fibrosis or chronic inflammation, and no endoplasmic reticulum stress was detected in hepatocytes expressing hFVIII-SQ protein. Hepatocytes stained positive for vector genomes, showing a trend for more cells transduced with higher doses. Molecular analysis demonstrated the presence of full-length, inverted terminal repeat-fused, circular episomal genomes, which are associated with long-term expression. Interindividual differences in transgene expression were noted despite similar successful transduction, possibly influenced by host-mediated post-transduction mechanisms of vector transcription, hFVIII-SQ protein translation and secretion. Overall, these results demonstrate persistent episomal vector structures following AAV5-hFVIII-SQ administration and begin to elucidate potential mechanisms mediating interindividual variability.
Global nature run data with realistic high-resolution carbon weather for the year of the Paris Agreement
Authors: Agustí-Panareda Anna , McNorton Joe , Balsamo Gianpaolo , Baier Bianca C. , Bousserez Nicolas , Boussetta Souhail , Brunner Dominik , Chevallier Frédéric , Choulga Margarita , Diamantakis Michail , Engelen Richard , Flemming Johannes , Granier Claire , Guevara Marc , Denier van der Gon Hugo , Elguindi Nellie , Haussaire Jean-Matthieu , Jung Martin , Janssens-Maenhout Greet , Kivi Rigel , Massart Sébastien , Papale Dario , Parrington Mark , Razinger Miha , Sweeney Colm , Vermeulen Alex , Walther Sophia 
Published: April 2022

AbstractThe CO2 Human Emissions project has generated realistic high-resolution 9 km global simulations for atmospheric carbon tracers referred to as nature runs to foster carbon-cycle research applications with current and planned satellite missions, as well as the surge of in situ observations. Realistic atmospheric CO2, CH4 and CO fields can provide a reference for assessing the impact of proposed designs of new satellites and in situ networks and to study atmospheric variability of the tracers modulated by the weather. The simulations spanning 2015 are based on the Copernicus Atmosphere Monitoring Service forecasts at the European Centre for Medium Range Weather Forecasts, with improvements in various model components and input data such as anthropogenic emissions, in preparation of a CO2 Monitoring and Verification Support system. The relative contribution of different emissions and natural fluxes towards observed atmospheric variability is diagnosed by additional tagged tracers in the simulations. The evaluation of such high-resolution model simulations can be used to identify model deficiencies and guide further model improvements.
Design and fabrication of box-type passive solar dryer (BTPSD) with thermal insulation material for valorizing biomass and neutral lipids of marine Chlorella vulgaris for biodiesel application
Authors: Kalaiselvan N. , Mathimani Thangavel 
Published: April 2022

AbstractThe staggering rate of population growth has augmented the reliance on fossil fuel utilization, and it kindled the society to explore alternative and sustainable sources of energy. In this regard, biodiesel from microalgae came to the limelight; but crucial energy-consuming and expensive processes like cultivation, harvesting, and drying make the microalgal biodiesel unsustainable and economically unfeasible. To surpass these impediments, in this research work, a low-cost box-type passive solar dryer (BTPSD) is designed and fabricated with zero energy consumption mode and compared with conventional hot air oven for drying the biomass, neutral lipids of the marine microalga Chlorella vulgaris for biodiesel application. The onset of the work, BTPSD with 2 cm thickness of glass wool as TIM (thermal insulation material), 4 cm TIM thickness and no TIM was simulated for thermal storage behaviour using ANSYS FLUENT 19.2 Computational Fluid Dynamics tool and based on the results, 4 cm TIM thickness was chosen for experimentation. The time taken by BTPSD and hot air oven to remove the moisture from algal biomass is 3 and 2 h, respectively, whereas for neutral lipids drying, it was 4 and 3.5 h, respectively. Though there is a little difference in drying time, neutral lipid and FAME content from both drying systems are tantamount, i.e., ~ 12% neutral lipid and 95% FAME. Further, the percentage of vital fatty acids identified from BTPSD and hot air oven methods are almost similar, i.e., C16:0 (23.4%), C18:1 (14.3%), C18:3 (11.42%), C18:1 (9.22%). Though the time taken for valorizing biomass and neutral lipids of C. vulgaris by BTPSD is slightly longer than hot air oven, low energy consumption and cost-effectiveness make the BTPSD a promising system to scale down the microalgal biodiesel production cost significantly.
Low voltage environmentally friendly plasma electrolytic oxidation process for titanium alloys
Authors: Hou Fengyan , Gorthy Rukmini , Mardon Ian , Tang Da , Goode Chris 
Published: April 2022

AbstractPlasma electrolytic oxidation (PEO) is a surface-treatment process extensively used to protect the surfaces of light metals such as Mg, Al, and Ti. Here, we report an environmentally friendly PEO process that uses nitrogen-containing electrolytes and low voltages (120 V) to form ~ 12 micron thick, uniform, adherent and porous oxide coatings on T1 titanium alloy surfaces. We evaluated the influence of nitrogenation by comparing the coatings to alloys treated in PEO baths without nitrogen-containing compounds. Both sets of samples exhibited basalt-like morphologies with distinct variation in the pore structures. The composition analyses showed that the coatings were primarily composites of titanium oxides and silicates. The T1 Ti alloys treated with nitrogen-containing electrolytes also contained TiC and TiN. This is the first ever report of producing TixOy, Ti–Si–O, TiC, and TiN composite coatings using a single PEO bath without carbide/nitride nanoparticles. The bandgaps of the coatings suggested visible light functionality. The use of nitrogen-based compounds in the PEO baths improved the hardness of the oxide layers but introduced stress-induced cracking which are potentially responsible for the reduction in corrosion resistance of the nitride and carbide containing coatings.
Dispositional gratitude, health-related factors, and lipid profiles in midlife: a biomarker study
Authors: Hartanto Andree , Majeed Nadyanna M. , Lua Verity Y. Q. , Wong Joax , Chen Nicole R. Y. 
Published: April 2022

AbstractDispositional gratitude has emerged in the literature to be associated with many health benefits in measures ranging from self-reported health to biomarkers of cardiovascular risk. However, little is known about the link between dispositional gratitude and lipid profiles. Drawing from the Gratitude and Self-improvement Model that grateful individuals are more likely to strive for actual self-improvement such as engaging in healthy lifestyles, we investigated the relation between dispositional gratitude and serum lipid levels. Participants consisted of 1800 adults from the National Survey of Midlife Development in the United States (MIDUS) 2: Biomarker Project (N = 1054) and MIDUS Refresher: Biomarker Project (N = 746). Serum lipid profiles were measured through fasting blood samples. After controlling for demographics, use of antihyperlipidemic mediation, and personality traits, we found that higher dispositional gratitude was associated with lower triglyceride levels. Results also revealed that healthy diets and lower BMI partially mediated the gratitude-triglyceride association. However, some variations in the analytic method may influence the associations between gratitude and triglycerides levels. Our findings provide preliminary evidence suggesting dispositional gratitude as a promising psychological factor that is associated with a healthier lipid profile.
Prevalence and characterisation of antimicrobial resistance genes and class 1 and 2 integrons in multiresistant Escherichia coli isolated from poultry production
Authors: Racewicz Przemysław , Majewski Michał , Biesiada Hanna , Nowaczewski Sebastian , Wilczyński Jarosław , Wystalska Danuta , Kubiak Magdalena , Pszczoła Marcin , Madeja Zofia E. 
Published: April 2022

AbstractA global increase in the populations of drug resistant bacteria exerts negative effects on animal production and human health. Our study has been focused on the assessment of resistance determinants in relation to phenotypic resistance of the 74 commensal E. coli isolates present in different ecological environments. The samples were collected from poultry litter, feces, and neck skin. Among the microorganisms isolated from the poultry litter (group A), the highest resistance was noted against AMP and DOX (100%). In the E. coli extracts from the cloacal swabs (group B), the highest resistance was observed against AMP (100%) and CIP (92%). The meat samples (group C) were characterized by resistance to AMP (100%) and STX (94.7%). Genes encoding resistance to β-lactams (blaTEM, blaCTX-M), fluoroquinolones (qnrA, qnrB, qnrS), aminoglycosides (strA-strB, aphA1, aac(3)-II), sulfonamides (sul1, sul2, sul3), trimethoprim (dfr1, dfr5, dfr7/17) and tetracyclines (tetA, tetB) were detected in the studied bacterial isolates. The presence of class 1 and 2 integrons was confirmed in 75% of the MDR E. coli isolates (plasmid DNA), of which 60% contained class 1 integrons, 15% contained class 2 integrons, and 11.7% carried integrons of both classes. Thus, it may be concluded that integrons are the common mediators of antimicrobial resistance among commensal multidrug resistant Escherichia coli at important stages of poultry production.
Adenosine inhibits TNFα-induced MMP-3 production in MH7A rheumatoid arthritis synoviocytes via A2A receptor signaling
Authors: Konishi Hiroe , Kanou Shun-En , Yukimatsu Rika , Inui Mizuki , Sato Motoya , Yamamoto Naruto , Nakano Masayoshi , Koshiba Masahiro 
Published: April 2022

AbstractAdenosine causes the anti-inflammatory effect of MTX; however, the contributions of synoviocyte adenosine receptors (AdoRs) are unknown, and matrix metalloproteinase 3 (MMP-3) is released by fibroblast-like synoviocytes in response to inflammatory signaling. To understand the mechanism of the clinical observation that the matrix proteinase-3 concentration of patients with rheumatoid arthritis treated successfully with methotrexate does not usually normalize, we investigated the effects of A2A AdoR activation and inhibition on tumor necrosis factor-alpha (TNFα)-induced MMP-3 release by MH7A human rheumatoid synovial cells. MH7A cells constitutively expressed membrane-associated A2A AdoRs, and HENECA enhanced intracellular cAMP. Stimulation with TNFα markedly enhanced release of MMP-3 from MH7A cells, whereas HENECA partially and dose-dependently inhibited TNFα-evoked MMP-3 release. Similarly, dbcAMP partially inhibited TNFα-induced MMP-3 release. Pretreatment with ZM241385 reversed the inhibitory effects of HENECA. Further, TNFα induced p38 MAPK and ATF-2 phosphorylation, whereas HENECA suppressed p38 MAPK and ATF-2 phosphorylation. We concluded that adenosine signaling via A2A AdoRs, adenylyl cyclase, and cAMP reduces TNFα-induced MMP-3 production by interfering with p38 MAPK/ATF-2 activity. Activation of A2A AdoR signaling alone using HENECA did not reduce TNFα-induced MMP-3 production to the basal levels, which may explain why MTX usually decreases but does not eliminate serum MMP-3.
Biological activities and phenolic compounds of olive oil mill wastewater from Abani, endemic Algerian variety
Authors: Gueboudji Zakia , Addad Dalila , Kadi Kenza , Nagaz Kamel , Secrafi Mansour , Yahya Leila Ben , Lachehib Belgacem , Abdelmalek Assia 
Published: April 2022

AbstractThe current study aimed to determination of cytotoxicity, antioxidant, anti-inflammatory, anti-hemolytic, and anticoagulant activities of phenolic compounds extracted from olive oil mill wastewater (OMW) issue from the cold extraction of olive oil from Khenchela eastern in Algeria. The LC–MS (liquid chromatography–mass spectrometry) results were revealed the presence of 20 phenolic compounds in the extract of OMW and mostly consisted of Kaempferol, 4,5-di-O-caffeoyquinic acid, quinic acid, and caffeic acid. The extracts possessed effective reducing power (FRAP) and high radical scavenging activity against DPPH (2,2-diphenyl-1-picrylhydrazyl), ABTS + (2,2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) free radicals, and it inhibited cytochrome c reduction in a dose-dependent manner. They exert a protective effect on red blood cells, and they were found to exhibit the highest inhibitory effect anti-inflammatory activity using inhibition of protein denaturation (IPD) and membrane stabilizing potential (MSP) tests (80.46 ± 3.81 µg/mL and 87.43 ± 0.66 µg/mL) more than the standard used. The extract also showed the greatest anticoagulant activity in both the endogenous and exogenous routes (44.77 ± 0.25 s and 15.84 ± 0.12 s, respectively). Based on these findings, it is reasonable to infer that OMW is a good source of natural phenolic compounds with potential antioxidant, anti-inflammatory, and anticoagulant properties.
Water quality assessment and evaluation of human health risk of drinking water from source to point of use at Thulamela municipality, Limpopo Province
Authors: Luvhimbi N. , Tshitangano T. G. , Mabunda J. T. , Olaniyi F. C. , Edokpayi J. N. 
Published: April 2022

AbstractWater quality has been linked to health outcomes across the world. This study evaluated the physico-chemical and bacteriological quality of drinking water supplied by the municipality from source to the point of use at Thulamela municipality, Limpopo Province, South Africa; assessed the community practices regarding collection and storage of water and determined the human health risks associated with consumption of the water. Assessment of water quality was carried out on 114 samples. Questionnaires were used to determine the community’s practices of water transportation from source to the point-of-use and storage activities. Many of the households reported constant water supply interruptions and the majority (92.2%) do not treat their water before use. While E. coli and total coliform were not detected in the water samples at source (dam), most of the samples from the street taps and at the point of use (household storage containers) were found to be contaminated with high levels of E. coli and total coliform. The levels of E. coli and total coliform detected during the wet season were higher than the levels detected during the dry season. Trace metals’ levels in the drinking water samples were within permissible range of both the South African National Standards and World Health Organisation. The calculated non-carcinogenic effects using hazard quotient toxicity potential and cumulative hazard index of drinking water through ingestion and dermal pathways were less than unity, implying that consumption of the water could pose no significant non-carcinogenic health risk. Intermittent interruption in municipal water supply and certain water transportation and storage practices by community members increase the risk of water contamination. We recommend a more consistent supply of treated municipal water in Limpopo province and training of residents on hygienic practices of transportation and storage of drinking water from the source to the point of use.
Imaging the effect of high photoexcited densities on valley polarization and coherence in MoS2 monolayers
Authors: Cadiz F. , Gerl S. , Taniguchi T. , Watanabe K. 
Published: April 2022

AbstractWe have investigated the laser-induced valley polarization and coherence of encapsulated MoS2 monolayer as a function of temperature, power density, and spatial position. Besides a non-monotonic dependence on temperature, recently attributed to a dependence of the valley relaxation time on the momentum scattering rate, we observe a two-fold increase of the valley polarization when increasing the laser excitation power. We attribute this effect to a local heating induced by the energy relaxation of photoexcited excitons and to an increase of the exciton-exciton scattering rate. In contrast, only a moderate enhancement of valley coherence is observed, which exhibits a dramatic drop after further increasing the excitation power. We attribute this behaviour to the detrimental role of exciton-exciton interactions on the pure dephasing rate responsible for the loss of coherence between the valleys. This manifests itself by a strong dip in the spatial profile of the valley coherence at high photoexcited densities.
Non-coding RNA LEVER sequestration of PRC2 can mediate long range gene regulation
Authors: Teo Wei Wen , Cao Xinang , Wu Chan-Shuo , Tan Hong Kee , Zhou Qiling , Gao Chong , Vanuytsel Kim , Kumar Sara S. , Murphy George J. , Yang Henry , Chai Li , Tenen Daniel G. 
Published: April 2022

AbstractPolycomb Repressive Complex 2 (PRC2) is an epigenetic regulator required for gene silencing during development. Although PRC2 is a well-established RNA-binding complex, the biological function of PRC2-RNA interaction has been controversial. Here, we study the gene-regulatory role of the inhibitory PRC2-RNA interactions. We report a nuclear long non-coding RNA,LEVER, which mapped 236 kb upstream of theβ-globincluster as confirmed by Nanopore sequencing.LEVERRNA interacts with PRC2 in its nascent form, and this prevents the accumulation of the H3K27 repressive histone marks withinLEVERlocus. Interestingly, the accessibleLEVERchromatin, in turn, suppresses the chromatin interactions between theε-globinlocus andβ-globinlocus control region (LCR), resulting in a repressive effect onε-globingene expression. Our findings validate that the nascent RNA-PRC2 interaction inhibits local PRC2 function in situ. More importantly, we demonstrate that such a local process can in turn regulate the expression of neighboring genes.
A selectivity filter mutation provides insights into gating regulation of a K+ channel
Authors: Friesacher Theres , Reddy Haritha P. , Bernsteiner Harald , Carlo Combista J. , Shalomov Boris , Bera Amal K. , Zangerl-Plessl Eva-Maria , Dascal Nathan , Stary-Weinzinger Anna 
Published: April 2022

AbstractG-protein coupled inwardly rectifying potassium (GIRK) channels are key players in inhibitory neurotransmission in heart and brain. We conducted molecular dynamics simulations to investigate the effect of a selectivity filter (SF) mutation, G154S, on GIRK2 structure and function. We observe mutation-induced loss of selectivity, changes in ion occupancy and altered filter geometry. Unexpectedly, we reveal aberrant SF dynamics in the mutant to be correlated with motions in the binding site of the channel activator Gβγ. This coupling is corroborated by electrophysiological experiments, revealing that GIRK2wt activation by Gβγ reduces the affinity of Ba2+ block. We further present a functional characterization of the human GIRK2G154S mutant validating our computational findings. This study identifies an allosteric connection between the SF and a crucial activator binding site. This allosteric gating mechanism may also apply to other potassium channels that are modulated by accessory proteins.