bluuebunny/crossref_metadata_2025_split huggingface dataset:
Overabundance of Veillonella parvula promotes intestinal inflammation by activating macrophages via LPS-TLR4 pathway
Authors: Zhan Zhiyan , Liu Wenxue , Pan Liya , Bao Yiwen , Yan Zhilong , Hong Li 
Published: May 2022

AbstractHirschsprung’s disease-associated enterocolitis (HAEC) is the most common complication of Hirschsprung’s disease (HSCR). The microbiome pattern of intestinal flora in HAEC patients was significantly abnormal compared to that in HSCR patients. The overabundance of V. parvula was detected in the gut of HAEC patients. To elucidate the pathological mechanisms of the overabundance of V. parvula, we established and analyzed inflammatory models induced by LPS or single-bacterial strain transplantation in vivo. The transplantation of V. parvula induced inflammatory response in the colon of mice. Besides, we found that LPS from V. parvula can significantly impair the barrier function of colonic epithelial cells and then activate macrophages which impaired pacemaker function of interstitial cells of Cajal (ICCs). It was thus a vicious cycle, where the macrophage-related inflammation caused by V. parvula via LPS-TLR4 pathway damaged the intestinal motility, which further aggravated the intestinal flora dysbiosis and promoted the development of HAEC. Itaconic acid could break the vicious cycle by inhibiting the activation of macrophages. It could be a potential therapeutic strategy for HAEC patients with intestinal flora dysbiosis.
The AMPK-related kinase NUAK2 suppresses glutathione peroxidase 4 expression and promotes ferroptotic cell death in breast cancer cells
Authors: Singh Tanu , Beatty Alexander , Peterson Jeffrey R. 
Published: May 2022

AbstractFerroptosis is a caspase-independent form of regulated cell death strongly linked to the accumulation of reactive lipid hydroperoxides. Lipid hydroperoxides are neutralized in cells by glutathione peroxidase 4 (GPX4) and inhibitors of GPX4 are potent ferroptosis inducers with therapeutic potential in cancer. Here we report that siRNA-mediated silencing of the AMPK-related kinase NUAK2 suppresses cell death by small-molecule inducers of ferroptosis but not apoptosis. Mechanistically we find that NUAK2 suppresses the expression of GPX4 at the RNA level and enhances ferroptosis triggered by GPX4 inhibitors in a manner independent of its kinase activity. NUAK2 is amplified along with MDM4 in a subset of breast cancers, particularly the claudin-low subset, suggesting that this may predict vulnerability to GPX4 inhibitors. These findings identify a novel pathway regulating GPX4 expression as well as ferroptotic sensitivity with potential as a biomarker of breast cancer patients that might respond to GPX4 inhibition as a therapeutic strategy.
Protective effect of platinum nano-antioxidant and nitric oxide against hepatic ischemia-reperfusion injury
Authors: Mu Jing , Li Chunxiao , Shi Yu , Liu Guoyong , Zou Jianhua , Zhang Dong-Yang , Jiang Chao , Wang Xiuli , He Liangcan , Huang Peng , Yin Yuxin , Chen Xiaoyuan 
Published: May 2022

AbstractTherapeutic interventions of hepatic ischemia-reperfusion injury to attenuate liver dysfunction or multiple organ failure following liver surgery and transplantation remain limited. Here we present an innovative strategy by integrating a platinum nanoantioxidant and inducible nitric oxide synthase into the zeolitic imidazolate framework-8 based hybrid nanoreactor for effective prevention of ischemia-reperfusion injury. We show that platinum nanoantioxidant can scavenge excessive reactive oxygen species at the injury site and meanwhile generate oxygen for subsequent synthesis of nitric oxide under the catalysis of nitric oxide synthase. We find that such cascade reaction successfully achieves dual protection for the liver through reactive oxygen species clearance and nitric oxide regulation, enabling reduction of oxidative stress, inhibition of macrophage activation and neutrophil recruitment, and ensuring suppression of proinflammatory cytokines. The current work establishes a proof of concept of multifunctional nanotherapeutics against ischemia-reperfusion injury, which may provide a promising intervention solution in clinical use.
Simultaneously achieving giant piezoelectricity and record coercive field enhancement in relaxor-based ferroelectric crystals
Authors: Yang Liya , Huang Houbing , Xi Zengzhe , Zheng Limei , Xu Shiqi , Tian Gang , Zhai Yuzhi , Guo Feifei , Kong Lingping , Wang Yonggang , Lü Weiming , Yuan Long , Zhao Minglei , Zheng Haiwu , Liu Gang 
Published: May 2022

AbstractA large coercive field (EC) and ultrahigh piezoelectricity are essential for ferroelectrics used in high-drive electromechanical applications. The discovery of relaxor-PbTiO3 crystals is a recent breakthrough; they currently afford the highest piezoelectricity, but usually with a low EC. Such performance deterioration occurs because high piezoelectricity is interlinked with an easy polarization rotation, subsequently favoring a dipole switch under small fields. Therefore, the search for ferroelectrics with both a large EC and ultrahigh piezoelectricity has become an imminent challenge. Herein, ternary Pb(Sc1/2Nb1/2)O3–Pb(Mg1/3Nb2/3)O3–PbTiO3 crystals are reported, wherein the dispersed local heterogeneity comprises abundant tetragonal phases, affording a EC of 8.2 kV/cm (greater than that of Pb(Mg1/3Nb2/3)O3–PbTiO3 by a factor of three) and ultrahigh piezoelectricity (d33 = 2630 pC/N; d15 = 490 pC/N). The observed EC enhancement is the largest reported for ultrahigh-piezoelectric materials, providing a simple, practical, and universal route for improving functionalities in ferroelectrics with an atomic-level understanding.
Potential fire risks in South America under anthropogenic forcing hidden by the Atlantic Multidecadal Oscillation
Authors: Wang Yanfeng , Huang Ping 
Published: May 2022

AbstractFires in South America have profound effects on climate change and air quality. Although anthropogenic forcing has exacerbated drought and fire risks, the fire emissions and aerosol pollution in the southern Amazon and the Pantanal region showed a consistent long-term decrease during the dry season (August–October) between 2003 and 2019. Here, we find that the decreasing trend in fire emissions, mainly located in the non-deforested region, was associated with climatic conditions unfavorable for intensifying and spreading fires, including increased humidity and slower surface wind speed. These climatic trends can be attributed to weakening of the positive phase of the Atlantic Multidecadal Oscillation, which has strengthened the northeast trade winds within the region (3°S–13°N) and the northwest winds east of the Andes that transport more moisture into the southern Amazon and the Pantanal region. Our findings show the mitigating effects of weakening of the positive Atlantic Multidecadal Oscillation phase on human-induced intensification of fire risks in South America and warn of potentially increased risks of fires and aerosol pollution under intensified anthropogenic forcing in the future.
Well-defined nanostructuring with designable anodic aluminum oxide template
Authors: Xu Rui , Zeng Zhiqiang , Lei Yong 
Published: May 2022

AbstractWell-defined nanostructuring over size, shape, spatial configuration, and multi-combination is a feasible concept to reach unique properties of nanostructure arrays, while satisfying such broad and stringent requirements with conventional techniques is challenging. Here, we report designable anodic aluminium oxide templates to address this challenge by achieving well-defined pore features within templates in terms of in-plane and out-of-plane shape, size, spatial configuration, and pore combination. The structural designability of template pores arises from designing of unequal aluminium anodization rates at different anodization voltages, and further relies on a systematic blueprint guiding pore diversification. Starting from the designable templates, we realize a series of nanostructures that inherit equal structural controllability relative to their template counterparts. Proof-of-concept applications based on such nanostructures demonstrate boosted performance. In light of the broad selectivity and high controllability, designable templates will provide a useful platform for well-defined nanostructuring.
Influence of nutrient supply on plankton microbiome biodiversity and distribution in a coastal upwelling region
Authors: James Chase C. , Barton Andrew D. , Allen Lisa Zeigler , Lampe Robert H. , Rabines Ariel , Schulberg Anne , Zheng Hong , Goericke Ralf , Goodwin Kelly D. , Allen Andrew E. 
Published: May 2022

AbstractThe ecological and oceanographic processes that drive the response of pelagic ocean microbiomes to environmental changes remain poorly understood, particularly in coastal upwelling ecosystems. Here we show that seasonal and interannual variability in coastal upwelling predicts pelagic ocean microbiome diversity and community structure in the Southern California Current region. Ribosomal RNA gene sequencing, targeting prokaryotic and eukaryotic microbes, from samples collected seasonally during 2014-2020 indicate that nitracline depth is the most robust predictor of spatial microbial community structure and biodiversity in this region. Striking ecological changes occurred due to the transition from a warm anomaly during 2014-2016, characterized by intense stratification, to cooler conditions in 2017-2018, representative of more typical upwelling conditions, with photosynthetic eukaryotes, especially diatoms, changing most strongly. The regional slope of nitracline depth exerts strong control on the relative proportion of highly diverse offshore communities and low biodiversity, but highly productive nearshore communities.
Unveiling hidden energy poverty using the energy equity gap
Authors: Cong Shuchen , Nock Destenie , Qiu Yueming Lucy , Xing Bo 
Published: May 2022

AbstractIncome-based energy poverty metrics ignore people’s behavior patterns, particularly reducing energy consumption to limit financial stress. We investigate energy-limiting behavior in low-income households using a residential electricity consumption dataset. We first determine the outdoor temperature at which households start using cooling systems, the inflection temperature. Our relative energy poverty metric, the energy equity gap, is defined as the difference in the inflection temperatures between low and high-income groups. In our study region, we estimate the energy equity gap to be between 4.7–7.5 °F (2.6–4.2 °C). Within a sample of 4577 households, we found 86 energy-poor and 214 energy-insecure households. In contrast, the income-based energy poverty metric, energy burden (10% threshold), identified 141 households as energy-insecure. Only three households overlap between our energy equity gap and the income-based measure. Thus, the energy equity gap reveals a hidden but complementary aspect of energy poverty and insecurity.
The dopamine transporter antiports potassium to increase the uptake of dopamine
Authors: Schmidt Solveig G. , Malle Mette Galsgaard , Nielsen Anne Kathrine , Bohr Søren S.-R. , Pugh Ciara F. , Nielsen Jeppe C. , Poulsen Ida H. , Rand Kasper D. , Hatzakis Nikos S. , Loland Claus J. 
Published: May 2022

AbstractThe dopamine transporter facilitates dopamine reuptake from the extracellular space to terminate neurotransmission. The transporter belongs to the neurotransmitter:sodium symporter family, which includes transporters for serotonin, norepinephrine, and GABA that utilize the Na+ gradient to drive the uptake of substrate. Decades ago, it was shown that the serotonin transporter also antiports K+, but investigations of K+-coupled transport in other neurotransmitter:sodium symporters have been inconclusive. Here, we show that ligand binding to the Drosophila- and human dopamine transporters are inhibited by K+, and the conformational dynamics of the Drosophila dopamine transporter in K+ are divergent from the apo- and Na+-states. Furthermore, we find that K+ increases dopamine uptake by the Drosophila dopamine transporter in liposomes, and visualize Na+ and K+ fluxes in single proteoliposomes using fluorescent ion indicators. Our results expand on the fundamentals of dopamine transport and prompt a reevaluation of the impact of K+ on other transporters in this pharmacologically important family.
Universal non-Hermitian skin effect in two and higher dimensions
Authors: Zhang Kai , Yang Zhesen , Fang Chen 
Published: May 2022

AbstractSkin effect, experimentally discovered in one dimension, describes the physical phenomenon that on an open chain, an extensive number of eigenstates of a non-Hermitian Hamiltonian are localized at the end(s) of the chain. Here in two and higher dimensions, we establish a theorem that the skin effect exists, if and only if periodic-boundary spectrum of the Hamiltonian covers a finite area on the complex plane. This theorem establishes the universality of the effect, because the above condition is satisfied in almost every generic non-Hermitian Hamiltonian, and, unlike in one dimension, is compatible with all point-group symmetries. We propose two new types of skin effect in two and higher dimensions: the corner-skin effect where all eigenstates are localized at corners of the system, and the geometry-dependent-skin effect where skin modes disappear for systems of a particular shape, but appear on generic polygons. An immediate corollary of our theorem is that any non-Hermitian system having exceptional points (lines) in two (three) dimensions exhibits skin effect, making this phenomenon accessible to experiments in photonic crystals, Weyl semimetals, and Kondo insulators.
Dichotomy of the BSL phosphatase signaling spatially regulates MAPK components in stomatal fate determination
Authors: Guo Xiaoyu , Ding Xue , Dong Juan 
Published: May 2022

AbstractMAPK signaling modules play crucial roles in regulating numerous biological processes in all eukaryotic cells. How MAPK signaling specificity and strength are tightly controlled remains a major challenging question. In Arabidopsis stomatal development, the MAPKK Kinase YODA (YDA) functions at the cell periphery to inhibit stomatal production by activating MAPK 3 and 6 (MPK3/6) that directly phosphorylate stomatal fate-determining transcription factors for degradation in the nucleus. Recently, we demonstrated that BSL1, one of the four BSL protein phosphatases, localizes to the cell cortex to activate YDA, elevating MPK3/6 activity to suppress stomatal formation. Here, we showed that at the plasma membrane, all four members of BSL proteins contribute to the YDA activation. However, in the nucleus, specific BSL members (BSL2, BSL3, and BSU1) directly deactivate MPK6 to counteract the linear MAPK pathway, thereby promoting stomatal formation. Thus, the pivotal MAPK signaling in stomatal fate determination is spatially modulated by a signaling dichotomy of the BSL protein phosphatases in Arabidopsis, providing a prominent example of how MAPK activities are integrated and specified by signaling compartmentalization at the subcellular level.
Electric-field driven stability control of skyrmions in an ultrathin transition-metal film
Authors: Paul Souvik , Heinze Stefan 
Published: May 2022

AbstractTo realize future spintronic applications with magnetic skyrmions—topologically nontrivial swirling spin structures—it is essential to achieve efficient writing and deleting capabilities of these quasi-particles. Electric-field assisted nucleation and annihilation is a promising route, however, the understanding of the underlying microscopic mechanisms is still limited. Here, we show how the stability of individual magnetic skyrmions in an ultrathin transition-metal film can be controlled via external electric fields. We demonstrate based on density functional theory that it is important to consider the changes of all interactions with electric field, i.e., the pair-wise exchange, the Dzyaloshinskii–Moriya interaction, the magnetocrystalline anisotropy energy, and the higher-order exchange interactions. The energy barriers for electric-field assisted skyrmion writing and deleting obtained via atomistic spin simulations vary by up to a factor of three more than the variations of the interactions calculated from first-principles. This surprising effect originates from the electric-field dependent size of metastable skyrmions at a fixed magnetic field. The large changes in lifetimes allow the possibility of electric-field assisted thermally activated writing and deleting of skyrmions.
Genetics of smoking and risk of clonal hematopoiesis
Authors: Levin Michael G. , Nakao Tetsushi , Zekavat Seyedeh M. , Koyama Satoshi , Bick Alexander G. , Niroula Abhishek , Ebert Benjamin , Damrauer Scott M. , Natarajan Pradeep 
Published: May 2022

AbstractClonal hematopoiesis of indeterminate potential (CHIP) and mosaic chromosomal alterations (mCAs) represent two forms of clonal hematopoiesis where clones bearing expanded somatic mutations have been linked to both oncologic and non-oncologic clinical outcomes including atherosclerosis and all-cause mortality. Epidemiologic studies have highlighted smoking as an important driver of somatic mutations across multiple tissues. However, establishing the causal role of smoking in clonal hematopoiesis has been limited by observational study designs, which may suffer from confounding and reverse-causality. We performed two complementary analyses to investigate the role of smoking in mCAs and CHIP. First, using an observational study design among UK Biobank participants, we confirmed strong associations between smoking and mCAs. Second, using two-sample Mendelian randomization, smoking was strongly associated with mCA but not with CHIP. Overall, these results support a causal association between smoking and mCAs and suggest smoking may variably shape the fitness of clones bearing somatic mutations.
Sparse representations of high dimensional neural data
Authors: Mody Sandeep K. , Rangarajan Govindan 
Published: May 2022

AbstractConventional Vector Autoregressive (VAR) modelling methods applied to high dimensional neural time series data result in noisy solutions that are dense or have a large number of spurious coefficients. This reduces the speed and accuracy of auxiliary computations downstream and inflates the time required to compute functional connectivity networks by a factor that is at least inversely proportional to the true network density. As these noisy solutions have distorted coefficients, thresholding them as per some criterion, statistical or otherwise, does not alleviate the problem. Thus obtaining a sparse representation of such data is important since it provides an efficient representation of the data and facilitates its further analysis. We propose a fast Sparse Vector Autoregressive Greedy Search (SVARGS) method that works well for high dimensional data, even when the number of time points is relatively low, by incorporating only statistically significant coefficients. In numerical experiments, our methods show high accuracy in recovering the true sparse model. The relative absence of spurious coefficients permits accurate, stable and fast evaluation of derived quantities such as power spectrum, coherence and Granger causality. Consequently, sparse functional connectivity networks can be computed, in a reasonable time, from data comprising tens of thousands of channels/voxels. This enables a much higher resolution analysis of functional connectivity patterns and community structures in such large networks than is possible using existing time series methods. We apply our method to EEG data where computed network measures and community structures are used to distinguish emotional states as well as to ADHD fMRI data where it is used to distinguish children with ADHD from typically developing children.
Three dimensional modeling of atrioventricular valves provides predictive guides for optimal choice of prosthesis
Authors: Sazzad Faizus , Goh Jin Hao , Ong Zhi Xian , Almsherqi Zakaria Ali Moh , Lakshminarasappa Satish R , Ramanathan Kollengode R , Kofidis Theo 
Published: May 2022

AbstractInaccuracies in intraoperative and preoperative measurements and estimations may lead to adverse outcomes such as patient-prosthesis mismatch. We aim to measure the relation between different dimensions of the atrioventricular valve complex in explanted porcine heart models. After a detailed physical morphology study, a cast of the explanted heart models was made using silicon-based materials. Digital models were obtained from three-dimensional scanning of the casts, showing the measured annulopapillary distance was 2.50 ± 0.18 cm, and 2.75 ± 0.36 cm for anterior and posterior papillary muscles of left ventricle, respectively. There was a significant linear association between the mitral annular circumference to anterior–posterior distance (p = 0.003, 95% CI 0.78–3.06), mitral annular circumference to interpapillary distance (p = 0.009, 95% CI 0.38–2.20), anterior–posterior distance to interpapillary distance (p = 0.02, 95% CI 0.10–0.78). Anterior–posterior distance appeared to be the most important predictor of mitral annular circumference compared to other measured distances. The mean length of the perpendicular distance of the tricuspid annulus, a, was 2.65 ± 0.54 cm; b was 1.77 ± 0.60 cm, and c was 3.06 ± 0.55 cm. Distance c was the most significant predictor for tricuspid annular circumference (p = 0.006, 95% CI 0.28–2.84). The anterior–posterior distance measured by three-dimensional scanning can safely be used to predict the annular circumference of the mitral valve. For the tricuspid valve, the strongest predictor for the circumference is the c-distance. Other measurements made from the positively correlated parameters may be extrapolated to their respective correlated parameters. They can aid surgeons in selecting the optimal prosthesis for the patients and improve procedural planning.
NAD(P)H fluorescence lifetime imaging of live intestinal nematodes reveals metabolic crosstalk between parasite and host
Authors: Liublin Wjatscheslaw , Rausch Sebastian , Leben Ruth , Lindquist Randall L. , Fiedler Alexander , Liebeskind Juliane , Beckers Ingeborg E. , Hauser Anja E. , Hartmann Susanne , Niesner Raluca A. 
Published: May 2022

AbstractInfections with intestinal nematodes have an equivocal impact: they represent a burden for human health and animal husbandry, but, at the same time, may ameliorate auto-immune diseases due to the immunomodulatory effect of the parasites. Thus, it is key to understand how intestinal nematodes arrive and persist in their luminal niche and interact with the host over long periods of time. One basic mechanism governing parasite and host cellular and tissue functions, metabolism, has largely been neglected in the study of intestinal nematode infections. Here we use NADH (nicotinamide adenine dinucleotide) and NADPH (nicotinamide adenine dinucleotide phosphate) fluorescence lifetime imaging of explanted murine duodenum infected with the natural nematode Heligmosomoides polygyrus and define the link between general metabolic activity and possible metabolic pathways in parasite and host tissue, during acute infection. In both healthy and infected host intestine, energy is effectively produced, mainly via metabolic pathways resembling oxidative phosphorylation/aerobic glycolysis features. In contrast, the nematodes shift their energy production from balanced fast anaerobic glycolysis-like and effective oxidative phosphorylation-like metabolic pathways, towards mainly anaerobic glycolysis-like pathways, back to oxidative phosphorylation/aerobic glycolysis-like pathways during their different life cycle phases in the submucosa versus the intestinal lumen. Additionally, we found an increased NADPH oxidase (NOX) enzymes-dependent oxidative burst in infected intestinal host tissue as compared to healthy tissue, which was mirrored by a similar defense reaction in the parasites. We expect that, the here presented application of NAD(P)H-FLIM in live tissues constitutes a unique tool to study possible shifts between metabolic pathways in host-parasite crosstalk, in various parasitic intestinal infections.