bluuebunny/crossref_metadata_2025_split huggingface dataset:
A stromal Integrated Stress Response activates perivascular cancer-associated fibroblasts to drive angiogenesis and tumour progression
Authors: Verginadis Ioannis I. , Avgousti Harris , Monslow James , Skoufos Giorgos , Chinga Frank , Kim Kyle , Leli Nektaria Maria , Karagounis Ilias V. , Bell Brett I. , Velalopoulou Anastasia , Salinas Carlo Salas , Wu Victoria S. , Li Yang , Ye Jiangbin , Scott David A. , Osterman Andrei L. , Sengupta Arjun , Weljie Aalim , Huang Menggui , Zhang Duo , Fan Yi , Radaelli Enrico , Tobias John W. , Rambow Florian , Karras Panagiotis , Marine Jean-Christophe , Xu Xiaowei , Hatzigeorgiou Artemis G. , Ryeom Sandra , Diehl J. Alan , Fuchs Serge Y. , Puré Ellen , Koumenis Constantinos 
Published: June 2022

AbstractBidirectional signalling between the tumour and stroma shapes tumour aggressiveness and metastasis. ATF4 is a major effector of the Integrated Stress Response, a homeostatic mechanism that couples cell growth and survival to bioenergetic demands. Using conditional knockout ATF4 mice, we show that global, or fibroblast-specific loss of host ATF4, results in deficient vascularization and a pronounced growth delay of syngeneic melanoma and pancreatic tumours. Single-cell transcriptomics of tumours grown in Atf4Δ/Δ mice uncovered a reduction in activation markers in perivascular cancer-associated fibroblasts (CAFs). Atf4Δ/Δ fibroblasts displayed significant defects in collagen biosynthesis and deposition and a reduced ability to support angiogenesis. Mechanistically, ATF4 regulates the expression of the Col1a1 gene and levels of glycine and proline, the major amino acids of collagen. Analyses of human melanoma and pancreatic tumours revealed a strong correlation between ATF4 and collagen levels. Our findings establish stromal ATF4 as a key driver of CAF functionality, malignant progression and metastasis.
Faulty autolysosome acidification in Alzheimer’s disease mouse models induces autophagic build-up of Aβ in neurons, yielding senile plaques
Authors: Lee Ju-Hyun , Yang Dun-Sheng , Goulbourne Chris N. , Im Eunju , Stavrides Philip , Pensalfini Anna , Chan Han , Bouchet-Marquis Cedric , Bleiwas Cynthia , Berg Martin J. , Huo Chunfeng , Peddy James , Pawlik Monika , Levy Efrat , Rao Mala , Staufenbiel Mathias , Nixon Ralph A. 
Published: June 2022

AbstractAutophagy is markedly impaired in Alzheimer’s disease (AD). Here we reveal unique autophagy dysregulation within neurons in five AD mouse models in vivo and identify its basis using a neuron-specific transgenic mRFP-eGFP-LC3 probe of autophagy and pH, multiplex confocal imaging and correlative light electron microscopy. Autolysosome acidification declines in neurons well before extracellular amyloid deposition, associated with markedly lowered vATPase activity and build-up of Aβ/APP-βCTF selectively within enlarged de-acidified autolysosomes. In more compromised yet still intact neurons, profuse Aβ-positive autophagic vacuoles (AVs) pack into large membrane blebs forming flower-like perikaryal rosettes. This unique pattern, termed PANTHOS (poisonous anthos (flower)), is also present in AD brains. Additional AVs coalesce into peri-nuclear networks of membrane tubules where fibrillar β-amyloid accumulates intraluminally. Lysosomal membrane permeabilization, cathepsin release and lysosomal cell death ensue, accompanied by microglial invasion. Quantitative analyses confirm that individual neurons exhibiting PANTHOS are the principal source of senile plaques in amyloid precursor protein AD models.
Two successive bidirectional leaders propagated in triggered lightning channel
Authors: Wang Junlin , Li Quanxin , Wang Jianguo , Cai Li , Su Rui , Zhou Mi , Fan Yadong 
Published: June 2022

AbstractA stepped leader propagated along the previous return-stroke channel in triggered lightning. After the stepped leader decayed, the first bidirectional leader went through the process of initiation, propagation and dissipation. Then the second bidirectional leader initiated at the termination of the decayed first bidirectional leader and propagated toward the ground, generating the fourth return-stroke. The observations were synchronously performed through a high-speed camera and electromagnetic field measurements. The first bidirectional leader was characterized by similar average upward and downward velocities of 0.76 × 106 m/s and 0.67 × 106 m/s. The velocity of the upward positive leader of the first bidirectional leader was noticeably fluctuated, ranging 0.39 × 106–1.78 × 106 m/s. The second bidirectional leader was characterized by a sustainable propagating upward end with an average velocity of 1.82 × 106 m/s. The velocity fluctuation trend of the upward end depends on the neutralization amount of the residual negative charge and the positive charge in UPL.
Post-vaccination outcomes in association with four COVID-19 vaccines in the Kingdom of Bahrain
Authors: AlQahtani Manaf , Du Xing , Bhattacharyya Sujoy , Alawadi Abdulla , Al Mahmeed Hamad , Al Sayed Jaleela , Justman Jessica , El-Sadr Wafaa M. , Hidary Jack , Mukherjee Siddhartha 
Published: June 2022

AbstractWith the emergence of new SARS-Cov2 variants, critical questions have arisen about: (1) the effectiveness of the available COVID-19 vaccines developed to protect against the original Wuhan (wild type) variant and (2) the magnitude and clinical consequences of post-vaccination infections in the context of the Delta variant of SARS-Cov2. While some “real world” experiences with various vaccines have been reported, to our knowledge, few have examined comparative outcomes of various vaccines in one country as new SARS-CoV-2 variants have emerged. Here we present an analysis of COVID-19 related outcomes from a national database in Bahrain, a country with a total population of 1.51 million, where four vaccines were deployed (total vaccinated = 1,003,960 adults): AstraZeneca (AZ/Covishield), Pfizer/BioNtech, Sinopharm and Sputnik V. We compare the four vaccines, based on the following post-vaccination outcomes: SARS-CoV-2 infections, hospitalisations, ICU admissions and deaths, compared to unvaccinated individuals. We conclude that the four vaccines used in Bahrain were effective in significantly reducing all four COVID-19 related outcomes compared to unvaccinated individuals, prior to, and during the period when the Delta variant predominated in the country. However, compared to the three other vaccines, individuals vaccinated with Sinopharm vaccine had a higher risk of post-vaccination infections, hospitalisations and ICU admissions (e.g., 6.94%, 2.24%, 1.99% and 1.52% of COVID-19 cases of Sinopharm, Sputnik V, Pfizer and Covishield recipients, respectively, required hospitalisation versus 13.66% of COVID-19 cases among unvaccinated individuals); however, given the confounding factors, this needs to be confirmed by further studies. We find no evidence of biased selection for any vaccine, but note waning protection of the Pfizer/BioNtech vaccine during the January to June 2021 period in the age > 60 y cohort; however, this cannot be distinguished from the overall fall in hospitalisations overall. Our findings support the value of vaccination in preventing COVID-19 related outcomes, provide real world estimates on the outcomes and frequencies of post-vaccination infections for the four vaccines, which may inform vaccine selection in the context of the Delta variant across the globe.
Finite element analysis for ternary hybrid nanoparticles on thermal enhancement in pseudo-plastic liquid through porous stretching sheet
Authors: Sohail Muhammad , El-Zahar Essam R. , Mousa Abd Allah A. , Nazir Umar , Althobaiti Saad , Althobaiti Ali , Shah Nehad Ali , Chung Jae Dong 
Published: June 2022

AbstractThermal performance can be enhanced due to the mixing of nanoparticles in base fluid. This research discusses the involvement of ternary hybrid nanoparticles in the mixture of pseudo-plastic fluid model past over a two dimensional porous stretching sheet. Modelling of energy equation is carried out in the presence of external heat source or sink and viscous dissipation. The flow presenting equations and derived in Cartesian coordinate system under usual boundary layer theory in the form of complex coupled partial differential equations (PDEs). The derived PDEs have been converted into corresponding ordinary differential equations (ODEs) with the engagement of suitable transformation. The engineers, scientists and mathematicians have great interest in the solution of differential equations because to understand the real physics of the problem. Here, finite element scheme has been used to approximate the solution of the converted problem. The contribution of several emerging parameters on solution have been displayed through graphs and discussed. It is recommended that the finite element method can be engaged to approximate the solution of nonlinear problems arising in modelling the problem in mathematical physics.
Serum bicarbonate levels and gait abnormalities in older adults: a cross-sectional study
Authors: Ho Jim Q. , Verghese Joe , Abramowitz Matthew K. 
Published: June 2022

AbstractMetabolic acidosis is associated with impaired physical function in patients with chronic kidney disease (CKD) and older adults. However, whether acidosis is associated with gait abnormalities has received little attention. In a cohort of 323 community-dwelling adults ≥ 65 years old who underwent quantitative gait analysis, we examined associations of serum bicarbonate with eight individual gait variables. After multivariable adjustment, participants in the lowest bicarbonate tertile (< 25 mEq/L) had 8.6 cm/s slower speed (95% confidence interval [CI] 3.2–13.9), 7.9 cm shorter stride length (95% CI 3.5–12.2), and 0.03 s longer double support time (95% CI 0.002–0.1) compared with those in the middle tertile (25–27 mEq/L). Furthermore, lower bicarbonate levels were associated with more severe gait abnormalities in a graded manner. After further adjustment for possible mediating factors, associations were attenuated but remained significant. Among participants with CKD, associations were of similar or greater magnitude compared with those without CKD. Factor analysis was performed to synthesize the individual gait variables into unifying domains: among the pace, rhythm, and variability domains, lower serum bicarbonate was associated with worse performance in pace. In sum, lower serum bicarbonate was independently associated with worse performance on several quantitative measures of gait among older adults.
Protogynous functional hermaphroditism in the North American annual killifish, Millerichthys robustus
Authors: Domínguez-Castanedo Omar , Valdez-Carbajal Sharon , Muñoz-Campos Tessy M. , Huber Jean H. , Reichard Martin 
Published: June 2022

AbstractSex change (sequential hermaphroditism) has evolved repeatedly in teleost fishes when demographic conditions mediate fundamentally different sex-specific returns for individuals of particular age and size. We investigated the conditions for potential sex change in an annual killifish (Millerichthys robustus) from temporary pools in Mexico. In natural populations, we detected adults with intersex colouration and gonads. Therefore, we experimentally tested whether this apparent sex change can be generated by manipulation of ecological and social conditions, rather than being caused by environmental disturbance. We demonstrated functional protogynous (female-to-male) sex change in 60% replicates, when groups of five females interacted and had a visual and olfactory cue of a male. Only one female changed sex in any given replicate. The sex change never occurred in isolated females. Protandrous (male-to-female) hermaphroditism was not recorded. We characterized gradual changes in behaviour, colouration and gonad structure during the sex change process. The first behavioural signs of sex change were observed after 23 days. Secondary males spawned successfully after 75 days. We discuss the adaptive potential of sex change in short-lived annual fishes through the seasonal decline of males, and during colonization of new habitats. This is the first observation of functional hermaphroditism in an annual killifish.
Financial concern reduces child directed speech in a socioeconomically diverse sample
Authors: Roby Erin , Scott Rose M. 
Published: June 2022

AbstractSocioeconomic status predicts the quantity and nature of child-directed speech that parents produce. However, the mechanisms underlying this relationship remain unclear. This study investigated whether the cognitive load imposed by resource scarcity suppresses parent talk by examining time-dependent variation in child-directed speech in a socioeconomically diverse sample. We predicted that child-directed speech would be lowest at the end of the month when Americans report the greatest financial strain. 166 parents and their 2.5 to 3-year-old children (80 female) participated in a picture-book activity; the number of utterances, word tokens, and word types used by parents were calculated. All three parent language measures were negatively correlated with the date of the month the activity took place, and this relationship did not vary with parental education. These findings suggest that above and beyond individual properties of parents, contextual factors such as financial concerns exert influence on how parents interact with their children.
The structure, function and expression analysis of the nodulin 26-like intrinsic protein subfamily of plant aquaporins in tomato
Authors: Zhang Yuxiang , Fei Shihong , Xu Yunmin , He Yong , Zhu Zhujun , Liu Yuanyuan 
Published: June 2022

AbstractThe nodulin 26-like intrinsic protein (NIP) family belonging to a group of aquaporin proteins is unique to plants. NIPs have a wide of transport activities and are involved in developmental processes and stress tolerance. The well reported Lsi1 and Lsi6 belonging to NIP III were characterized as Si transporters. However, except Lsi1 and Lsi6, most NIPs remain unknown. Here, we identified 43 putative aquaporins in tomato. We found there are 12 NIPs, including 8 NIP I proteins, 3 NIP II proteins, and 1 NIP III protein among the 43 aquaporins. Also, there are two Si efflux transporters SlLsi2-1 and SlLsi2-2 identified by using Lsi2 proteins from other species. By analysing the phylogenetic relationships, conserved residues and expression patterns, we propose that three NIP I members (SlNIP-2, SlNIP-3 and SlNIP-11) may transport water, ammonia, urea, and boric acid, and contribute to pollen development. Three NIP II proteins (SlNIP-7, SlNIP-9 and SlNIP-12) may be boric acid facilitators, and affect plant growth and anther development. Overall, the study provides valuable candidates of Si transporters and other NIP proteins to further explore their roles in uptake and transport for silicon, boron, and other substrates in tomato.
Methanol fixed feeder layers altered the pluripotency and metabolism of bovine pluripotent stem cells
Authors: Xu Wenqiang , Hao Ruifeng , Wang Jing , Gao Lingna , Han Xuejie , Li Chen , Fang Shu , Zhang Hui , Li Xueling 
Published: June 2022

AbstractThe pluripotency maintenance of pluripotent stem cells (PSCs) requires the suitable microenvironment, which commonly provided by feeder layers. However, the preparation of feeder layers is time consuming and labor exhaustive, and the feeder cells treated with mitomycin C or γ-ray irradiation bring heterologous contamination. In this study, mouse embryonic fibroblasts (MEFs) were treated by methanol to generate chemical fixed feeder cells, and bovine embryonic stem cells F7 (bESC-F7) cultured on this feeder layer. Then the pluripotency and metabolism of bESC-F7 cultured on methanol-fixed MEFs (MT-MEFs) named MT-F7 was compared with mitomycin C treated MEFs (MC-MEFs). The results showed that bESC-F7 formed alkaline phosphatase positive colonies on MT-MEFs, the relative expression of pluripotent markers of these cells was different from the bESCs cultured on the MC-MEFs (MC-F7). The long-term cultured MT-F7 formed embryoid bodies, showed the ability to differentiate into three germ layers similar to MC-F7. The analyses of RNA-seq data showed that MT-MEFs lead bESCs to novel steady expression patterns of genes regulating pluripotency and metabolism. Furthermore, the bovine expanded pluripotent stem cells (bEPSCs) cultured on MT-MEFs formed classical colonies, maintained pluripotency, and elevated metabolism. In conclusion, MT-MEFs were efficient feeder layer that maintain the distinctive pluripotency and metabolism of PSCs.
Effects of mesoscale eddies on intraseasonal variability of intermediate water east of Taiwan
Authors: Ren Qiang , Yu Fei , Nan Feng , Li Yuanlong , Wang Jianfeng , Liu Yansong , Chen Zifei 
Published: June 2022

AbstractThe intraseasonal variability of the intermediate water (IW) and its characteristics east of Taiwan are studied utilizing 17 months of long-term, continuous and synchronous measurements of temperature, salinity and current from mooring sites deployed at 122° E/23° N from January 2016 to May 2017. Direct measurements revealed water masses east of Taiwan alternately show complete South China Sea Intermediate Water or North Pacific Intermediate Water (NPIW) characteristics, mostly in a mixed state, with NPIW dominating 70% of the time. For the first time, it is demonstrated that the variation of IW with periods of ~ 80 days is mainly related to mesoscale eddies. Anticyclonic (cyclonic) eddies corresponding to an increase (decrease) in temperature and salinity in the intermediate layer. Further mechanism analysis indicates the vertical motion of the water mass inside the eddies is one of the reasons for the thermohaline change in the intermedaiter layer. In addition, the anticyclonic eddies may increase the salinity concentration gradient across the Luzon Strait, and the enhanced advection is favorable to the outflow of water masses in the South China Sea. When the cyclonic eddies acts on the eastern part of Taiwan, the influence of the northward advection is weakened and the southward flow on its left side is more favorable to the transport of NPIW.
Quantum coherence on selectivity and transport of ion channels
Authors: Seifi Mina , Soltanmanesh Ali , Shafiee Afshin 
Published: June 2022

AbstractRecently, it has been suggested that ion channel selectivity filter may exhibit quantum coherence, which may be appropriate to explain ion selection and conduction processes. Potassium channels play a vital role in many physiological processes. One of their main physiological functions is the efficient and highly selective transfer of K+ ions through the membranes into the cells. To do this, ion channels must be highly selective, allowing only certain ions to pass through the membrane, while preventing the others. The present research is an attempt to investigate the relationship between hopping rate and maintaining coherence in ion channels. Using the Lindblad equation to describe a three-level system, the results in different quantum regimes are examined. We studied the distillable coherence and the second order coherence function of the system. The oscillation of distillable coherence from zero, after the decoherence time, and also the behavior of the coherence function clearly show the point that the system is coherent in ion channels with high throughput rates.
Reduction of environmental chemicals, toxicity and particulate matter in wet scrubber device to achieve zero emissions
Authors: Ramaswamy Krishnaraj , Jule Leta Tesfaye , N Nagaprasad , Subramanian Kumaran , R Shanmugam , L Priyanka Dwarampudi , Seenivasan Venkatesh 
Published: June 2022

AbstractThe fine particles generated by the foundry industry are present in the atmosphere; they have an impact on the climate because of their influence on atmospheric radioactive phenomena. As a result of this scenario, there is a rising amount of legislation restricting the emission of pollutants from foundry industries and related businesses. In response to this situation, many researchers have concentrated on end-of-pipe technologies, one of which is the wet scrubber, which is a device that is primarily used in foundries to control pollution and is one of the devices that has been incorporated. The disadvantage of using this wet scrubber, on the other hand, is that it contributes to secondary pollution when it is used. In order to combat secondary pollution, a model of an enhanced wet scrubber system that incorporates a multi-sand filtering technology was developed. The performance of this redesigned wet scrubber system was evaluated with the use of computational fluid dynamics (CFD) software. In CFD, the Reynolds stress model was applied for simulation. The pressure magnitudes and velocity magnitudes are obtained by this simulation. The volume fraction of the dust was evaluated through the DPM approach. Because of the introduction of the filtration tank's computation, it was discovered that successful filtration was accomplished using sand filters, meaning that environmental chemicals and particles were totally filtered from 0.17 kg at the entrance to zero kg of particles at the outflow.
The impact of the suppression of highly connected protein interactions on the corona virus infection
Authors: Torres Felipe , Kiwi Miguel , Schuller Ivan K. 
Published: June 2022

AbstractSeveral highly effective Covid-19 vaccines are in emergency use, although more-infectious coronavirus strains, could delay the end of the pandemic even further. Because of this, it is highly desirable to develop fast antiviral drug treatments to accelerate the lasting immunity against the virus. From a theoretical perspective, computational approaches are useful tools for antiviral drug development based on the data analysis of gene expression, chemical structure, molecular pathway, and protein interaction mapping. This work studies the structural stability of virus–host interactome networks based on the graphical representation of virus–host protein interactions as vertices or nodes connected by commonly shared proteins. These graphical network visualization methods are analogous to those use in the design of artificial neural networks in neuromorphic computing. In standard protein-node-based network representation, virus–host interaction merges with virus–protein and host–protein networks, introducing redundant links associated with the internal virus and host networks. On the contrary, our approach provides a direct geometrical representation of viral infection structure and allows the effective and fast detection of the structural robustness of the virus–host network through proteins removal. This method was validated by applying it to H1N1 and HIV viruses, in which we were able to pinpoint the changes in the Interactome Network produced by known vaccines. The application of this method to the SARS-CoV-2 virus–host protein interactome implies that nonstructural proteins nsp4, nsp12, nsp16, the nuclear pore membrane glycoprotein NUP210, and ubiquitin specific peptidase USP54 play a crucial role in the viral infection, and their removal may provide an efficient therapy. This method may be extended to any new mutations or other viruses for which the Interactome Network is experimentally determined. Since time is of the essence, because of the impact of more-infectious strains on controlling the spread of the virus, this method may be a useful tool for novel antiviral therapies.