bluuebunny/crossref_metadata_2025_split huggingface dataset:
Surface properties-dependent antifungal activity of silver nanoparticles
Authors: Matras Ewelina , Gorczyca Anna , Przemieniecki Sebastian Wojciech , Oćwieja Magdalena 
Published: October 2022

AbstractSilver nanoparticles (AgNPs) exhibit unusual biocidal properties thanks to which they find a wide range of applications in diverse fields of science and industry. Numerous research studies have been devoted to the bactericidal properties of AgNPs while less attention has been focused on their fungicidal activity. Our studies were therefore oriented toward determining the impact of AgNPs characterized by different physicochemical properties on Fusarium avenaceum and Fusarium equiseti. The main hypothesis assumed that the fungicidal properties of AgNPs characterized by comparable morphology can be shaped by stabilizing agent molecules adsorbed on nanoparticle surfaces. Two types of AgNPs were prepared by the reduction of silver ions with sodium borohydride (SB) in the presence of trisodium citrate (TC) or cysteamine hydrochloride (CH). Both types of AgNPs exhibited a quasi-spherical shape. Citrate-stabilized AgNPs (TCSB-AgNPs) of an average size of 15 ± 4 nm were negatively charged. Smaller (12 ± 4 nm), cysteamine-capped AgNPs (CHSB-AgNPs) were characterized by a positive surface charge and higher silver ion release profile. The phytopathogens were exposed to the AgNPs in three doses equal to 2.5, 5 and 10 mg L−1 over 24 and 240 h. Additionally, the impact of silver ions delivered in the form of silver nitrate and the stabilizing agents of AgNPs on the fungi was also investigated. The response of phytopathogens to these treatments was evaluated by determining mycelial growth, sporulation and changes in the cell morphology. The results of our studies showed that CHSB-AgNPs, especially at a concentration of 10 mg L−1, strongly limited the vegetative mycelium growth of both species for short and long treatment times. The cell imaging revealed that CHSB-AgNPs damaged the conidia membranes and penetrated into the cells, while TCSB-AgNPs were deposited on their surface. The fungistatic (lethal) effect was demonstrated only for silver ions at the highest concentration for the F. equiseti species in the 240 h treatment. The number of spores of both Fusarium species was significantly reduced independently of the type of silver compounds used. Generally, it was found that the positively charged CHSB-AgNPs were more fungicidal than negatively charged TCSB-AgNPs. Thereby, it was established that the stabilizing agents of AgNPs and surface charge play a crucial role in the shaping of their fungicidal properties.
Actual conditions of person-to-object contact and a proposal for prevention measures during the COVID-19 pandemic
Authors: Hayashi Teruaki , Hase Daisuke , Suenaga Hikaru , Ohsawa Yukio 
Published: October 2022

AbstractThis study focused on human contact behavior with objects and discussed countermeasures during the COVID-19 pandemic across 15 location types. Reducing contact with objects and disinfecting items can be implemented at a relatively low cost. We created a protocol for organizing the objects, and 1260 subjects who went outside during a day between December 3–7, 2020 in Tokyo and Kanagawa, Japan were surveyed. The participants touched 7317 objects in total; the most common objects were doors, chairs, baskets, elevator equipment, and cash. One-way analysis of variance and Scheffé’s multiple comparison test showed that supermarkets had the lowest mean and median values despite having the highest number of users, contact objects, and object types. Conversely, the values for hotels were the highest, significantly higher than that for other places, excluding amusement parks, workplaces, and schools and universities. Furthermore, the long-tailed frequency distribution of the number of objects suggests that the objects touched by many individuals are limited; thus, it is important to determine the objects to be prioritized for disinfection at each location. The data and protocol could inform infection countermeasures that properly address the contact realities as they pertain to people’s behavior and objects.
A growth-based platform for detecting domain–peptide interactions in the cytoplasm of mammalian cells
Authors: Kimura Yosuke , Kashima Daiki , Kawahara Masahiro 
Published: October 2022

AbstractDevelopment of a method for detecting protein–protein interactions (PPIs) in living cells is important for therapeutic drug screening against various diseases including infectious diseases. We have recently developed a method named SOS localization-based interaction screening (SOLIS), in which we designed membrane-anchored and SOS-fused chimeric proteins, whose PPI-dependent association triggers membrane localization of the SOS-fused chimeric protein, activates the Ras/MAPK pathway, and induces cell growth. While SOLIS was able to detect relatively strong PPIs, further sensitivity was required for detecting intracellular endogenous PPIs typically having a micromolar order of dissociation constant (Kd). Here we develop high-sensitive SOLIS (H-SOLIS) that could universally detect PPIs with lower affinities. In order to improve the sensitivity, H-SOLIS introduces a heterodimeric helper interaction, in which addition of a small-molecule helper ligand could accommodate association of the two chimeric proteins and regulate the sensitivity. Four types of domain–peptide interactions having known Kd values are employed to examine the versatility and detection limit of H-SOLIS. Consequently, the heterodimer-inducible helper ligand dramatically enhances detection sensitivity, lowering the detection limit to a ten-micromolar order of Kd. Thus, H-SOLIS could be a platform to detect disease-related domain–peptide interactions for drug discovery screening.
Sensing nitriles with THz spectroscopy of urine vapours from cancers patients subject to chemotherapy
Authors: Vaks Vladimir , Anfertev Vladimir , Chernyaeva Maria , Domracheva Elena , Yablokov Anton , Maslennikova Anna , Zhelesnyak Alla , Baranov Alexei , Schevchenko Yuliia , Pereira Mauro Fernandes 
Published: October 2022

AbstractA THz nonstationary high-resolution spectrometer based on semiconductor superlattice multipliers is applied to investigate the dynamics of urine composition for cancer patients treated with chemotherapy. The molecular urine composition of healthy volunteers and cancer patients was compared and contrasted. We have found a set of nitriles that either appeared after chemotherapy or increased in content, which are expected as a result of bio-chemical damage to the liver. While no damage can be detected at this stage by existing clinical methods, the identified nitriles are candidates for further large-scale systematic testing towards markers for nephrotoxicity of chemotherapy at an early stage of the treatment, when conventional diagnostics cannot identify substantial organ damage. Comparing the metabolite concentration dynamics with side effects during chemotherapy might then help individuate patients prone to severe complications and correct the treatment. Our devices are game-changers for THz spectroscopy of liquids: they allow spanning four different frequency ranges for a general evaluation of most substances found in the liquid and selecting a spectral interval that bypasses the strong absorption lines from substances such as water and ammonia, which may otherwise mask the detection of the target metabolites.
Pulse width and intensity effects of pulsed electric fields on cancerous and normal skin cells
Authors: Rao Xin , Chen Sophia , Alfadhl Yasir , Chen Xiaodong , Sun Lingling , Yu Liyang , Zhou Jun 
Published: October 2022

AbstractMicrosecond pulsed electric fields (PEF) have previously been used for various tumour therapies, such as gene therapy, electrochemotherapy and irreversible electroporation (IRE), due to its demonstrated ability. However, recently nanosecond pulsed electric fields (nsPEF) have also been used as a potential tumor therapy via inducing cell apoptosis or immunogenic cell death to prevent recurrence and metastasis by interacting with intracellular organelles. A large proportion of the existing in-vitro studies of nsPEF on cells also suggests cell necrosis and swelling/blebbing can be induced, but the replicability and potential for other effects on cells suggesting a complicated process which requires further investigation. Therefore, this study investigated the effects of pulse width and intensity of nsPEF on the murine melanoma cells (B16) and normal murine fibroblast cells (L929) through electromagnetic simulation and in-vitro experiments. Through examining the evolution patterns of potential difference and electric fields on the intracellular compartments, the simulation has shown a differential effect of nsPEF on normal and cancerous skin cells, which explains well the results observed in the reported experiments. In addition, the modelling has provided a clear evidence that a few hundreds of ns PEF may have caused a mixed mode of effects, i.e. a ‘cocktail effect’, including cell electroporation and IRE due to an over their threshold voltage induced on the plasma membrane, as well as cell apoptosis and other biological effects caused by its interaction with the intracellular compartments. The in-vitro experiments in the pulse range of the hundreds of nanoseconds showed a possible differential cytotoxicity threshold of electric field intensity between B16 cells and L929 cells.
Data augmentation with improved regularisation and sampling for imbalanced blood cell image classification
Authors: Rana Priyanka , Sowmya Arcot , Meijering Erik , Song Yang 
Published: October 2022

AbstractDue to progression in cell-cycle or duration of storage, classification of morphological changes in human blood cells is important for correct and effective clinical decisions. Automated classification systems help avoid subjective outcomes and are more efficient. Deep learning and more specifically Convolutional Neural Networks have achieved state-of-the-art performance on various biomedical image classification problems. However, real-world data often suffers from the data imbalance problem, owing to which the trained classifier is biased towards the majority classes and does not perform well on the minority classes. This study presents an imbalanced blood cells classification method that utilises Wasserstein divergence GAN, mixup and novel nonlinear mixup for data augmentation to achieve oversampling of the minority classes. We also present a minority class focussed sampling strategy, which allows effective representation of minority class samples produced by all three data augmentation techniques and contributes to the classification performance. The method was evaluated on two publicly available datasets of immortalised human T-lymphocyte cells and Red Blood Cells. Classification performance evaluated using F1-score shows that our proposed approach outperforms existing methods on the same datasets.
Comparison of definitions of bronchopulmonary dysplasia to reflect the long-term outcomes of extremely preterm infants
Authors: Jeon Ga Won , Oh Minkyung , Lee Juyoung , Jun Yong Hoon , Chang Yun Sil 
Published: October 2022

AbstractSurvivors of neonatal bronchopulmonary dysplasia (BPD) have persistent respiratory, neurodevelopmental, and growth impairment over the first few years of life and later childhood, which represents an emerging burden for health systems. Therefore, there is an increasing need for a new definition and grading system of BPD that predicts long-term outcomes of high-risk infants who need timely and proper intervention to improve outcomes. We compared new definitions of BPD (National Institute of Child Health and Human Development [NICHD] 2018 and Neonatal Research Network [NRN] 2019) to the original NICHD 2001 definition at 3 years of age using a nationwide cohort of extreme preterm infants. New definitions and severity grading were clearly related to respiratory, neurodevelopmental, and growth impairments at 3 years of age and at 18–24 months corrected age (CA), whereas the original NICHD 2001 definition was not. Furthermore, the negative effect of BPD on growth was ameliorated at 3 years of age compared to 18–24 months CA. However, the negative effect of BPD in neonates on the respiratory system and neurodevelopment persisted at 3 years of age. These new definitions should be adopted to identify high-risk infants and improve long-term outcomes by exact diagnosis and BPD severity classification.
Comparison between low, moderate, and high intensity aerobic training with equalized loads on biomarkers and performance in rats
Authors: de Carvalho Carlos Dellavechia , Valentim Rafael Rossi , Navegantes Luiz Carlos Carvalho , Papoti Marcelo 
Published: October 2022

AbstractThis study investigated the physiological and molecular responses of Wistar Hannover rats, submitted to three 5-week chronic training models, with similar training loads. Twenty-four Wistar Hanover rats were randomly divided into four groups: control (n = 6), low-intensity training (Z1; n = 6), moderate-intensity training (Z2; n = 6) and high-intensity training (Z3; n = 6). The three exercise groups performed a 5-week running training three times a week, with the same prescribed workload but the intensity and the volume were different between groups. An increase in maximal speed was observed after four weeks of training for the three groups that trained, with no difference between groups. Higher rest glycogen was also observed in the soleus muscle after training for the exercise groups compared to the control group. We also found that the Z2 group had a higher protein content of total and phosphorylated GSK3-β compared to the control group after five weeks of training. In conclusion, the present study shows that five weeks of treadmill training based on intensity zones 1, 2, and 3 improved performance and increased resting glycogen in the soleus muscle, therefore intensity modulation does not change the training program adaptation since the different program loads are equalized.
Common variability in oestrogen-related genes and pancreatic ductal adenocarcinoma risk in women
Authors: Peduzzi Giulia , Archibugi Livia , Katzke Verena , Gentiluomo Manuel , Capurso Gabriele , Milanetto Anna Caterina , Gazouli Maria , Goetz Mara , Brenner Hermann , Vermeulen Roel C. H. , Talar-Wojnarowska Renata , Vanella Giuseppe , Tavano Francesca , Lucchesi Maurizio , Mohelnikova-Duchonova Beatrice , Chen Xuechen , Kiudelis Vytautas , Hegyi Péter , Oliverius Martin , Stocker Hannah , Stornello Caterina , Vodickova Ludmila , Souček Pavel , Neoptolemos John P. , Testoni Sabrina Gloria Giulia , Morelli Luca , Lawlor Rita T. , Basso Daniela , Izbicki Jakob R. , Ermini Stefano , Kupcinskas Juozas , Pezzilli Raffaele , Boggi Ugo , van Laarhoven Hanneke W. M. , Szentesi Andrea , Erőss Bálint , Capretti Giovanni , Schöttker Ben , Skieceviciene Jurgita , Aoki Mateus Nóbrega , van Eijck Casper H. J. , Cavestro Giulia Martina , Canzian Federico , Campa Daniele 
Published: October 2022

AbstractThe incidence of pancreatic ductal adenocarcinoma (PDAC) is different among males and females. This disparity cannot be fully explained by the difference in terms of exposure to known risk factors; therefore, the lower incidence in women could be attributed to sex-specific hormones. A two-phase association study was conducted in 12,387 female subjects (5436 PDAC cases and 6951 controls) to assess the effect on risk of developing PDAC of single nucleotide polymorphisms (SNPs) in 208 genes involved in oestrogen and pregnenolone biosynthesis and oestrogen-mediated signalling. In the discovery phase 14 polymorphisms showed a statistically significant association (P < 0.05). In the replication none of the findings were validated. In addition, a gene-based analysis was performed on the 208 selected genes. Four genes (NR5A2, MED1, NCOA2 and RUNX1) were associated with PDAC risk, but only NR5A2 showed an association (P = 4.08 × 10−5) below the Bonferroni-corrected threshold of statistical significance. In conclusion, despite differences in incidence between males and females, our study did not identify an effect of common polymorphisms in the oestrogen and pregnenolone pathways in relation to PDAC susceptibility. However, we validated the previously reported association between NR5A2 gene variants and PDAC risk.
Aetiologies and clinical presentation of central nervous system infections in Vietnamese patients: a prospective study
Authors: Gabor Julian Justin , Anh Chu Xuan , Sy Bui Tien , Hoan Phan Quoc , Quyen Dao Thanh , The Nguyen Trong , Kuk Salih , Kremsner Peter G. , Meyer Christian G. , Song Le Huu , Velavan Thirumalaisamy P. 
Published: October 2022

AbstractKnowledge of the clinical presentation of central nervous system (CNS) infections and the causative pathogens is crucial for appropriate diagnosis and rapid initiation of appropriate treatment to prevent severe neurological sequelae. The aim of this study is to understand the aetiology of CNS infections based on the clinical presentation of Vietnamese patients. A prospective hospital-based cohort study was conducted between May 2014 and May 2017. We screened 137 patients with clinically suspected CNS infection for fungal, bacterial and viral pathogens using their cerebrospinal fluid (CSF) and blood cultures. In addition, DNA or RNA extracted from CSF samples were subjected to nucleic acid testing (NAT) with a selective panel of bacterial, viral and fungal pathogens. At least one pathogen could be detected in 41% (n = 56) of the patients. The main pathogens causing CNS infections were Streptococcus suis (n = 16; 12%) and Neisseria meningitidis (n = 9; 7%), followed by Herpes simplex virus 1/2 (n = 4; 3%) and Klebsiella pneumoniae (n = 4; 3%). Other pathogens were only identified in a few cases. Patients with bacterial CNS infections were significantly older, had a worse outcome, a lower Glasgow Coma Scale (GCS), a higher rate of speech impairment and neck stiffness than patients with viral or tuberculous CNS infections. In northern Vietnam, adults are mostly affected by bacterial CNS infections, which have a severe clinical course and worse outcomes compared to viral or tuberculous CNS infections. Clinicians should be aware of the regional occurrence of pathogens to initiate rapid and appropriate diagnosis and treatment.
Development of lipid nanoparticles and liposomes reference materials (II): cytotoxic profiles
Authors: Syama Krishnapriya , Jakubek Zygmunt J. , Chen Sam , Zaifman Josh , Tam Yuen Yi C. , Zou Shan 
Published: October 2022

AbstractLipid based nanocarriers are one of the most effective drug delivery systems that is evident from the recent COVID-19 mRNA vaccines. The main objective of this study was to evaluate toxicity of six lipid based formulations with three surface charges—anionic, neutral or cationic, to establish certified reference materials (CRMs) for liposomes and siRNA loaded lipid nanoparticles (LNP-siRNA). Cytotoxicity was assessed by a proliferation assay in adherent and non-adherent cell lines. High concentration of three LNP-siRNAs did not affect viability of suspension cells and LNP-siRNAs were non-toxic to adherent cells at conventionally used concentration. Systematic evaluation using multiple vials and repeated test runs of three liposomes and three LNP-siRNA formulations showed no toxicity in HL60 and A549 cells up to 128 and 16 µg/mL, respectively. Extended treatment and low concentration of LNPs did not affect the viability of suspension cells and adherent cells at 96 h. Interestingly, 80% of A549 and HL60 cells in 3D conditions were viable when treated with cationic LNP-siRNA for 48 h. Taken together, anionic, cationic and neutral lipid formulations were non-toxic to cells and may be explored further in order to develop them as drug carriers.
Positive-electrode properties and crystal structures of Mg-rich transition metal oxides for magnesium rechargeable batteries
Authors: Kitamura Naoto , Konishi Yoichiro , Ma Wenli , Ishida Naoya , Mandai Toshihiko , Ishibashi Chiaki , Idemoto Yasushi 
Published: October 2022

AbstractIn this work, we focus on Mg–Fe–O and Mg–Ni–O with Mg-rich compositions as positive-electrode materials for magnesium rechargeable batteries, and prepare them by a thermal decomposition of precipitates obtained by a solution method. It is indicated from X-ray diffraction patterns that the Mg–Fe–O and Mg–Ni–O samples have the spinel and rocksalt structures, respectively. X-ray absorption near edge structures indicate that Fe and Ni are trivalent and divalent, respectively, in the Mg-rich oxides. From charge/discharge cycle test, it is demonstrated that the Mg–Fe–O shows higher discharge capacity than the other and then has good cycle performance while keeping a discharge capacity over 100 mA h g–1. To gain deeper understanding on a relationship between the electrode properties and the crystal structure of the Mg–Fe–O, the crystal structure is investigated by a Rietveld refinement using a synchrotron X-ray diffraction profile and an analysis on total correlation functions. It is indicated from these studies that a vacant octahedral site in the spinel structure is partially occupied by the excess Mg in the synthesized sample. This structural feature might result in a stable charge/discharge cycle performance of the Mg-rich Mg–Fe–O.
Subclinical diagnosis of cisplatin-induced ototoxicity with biomarkers
Authors: Generotti Charles , Cox Brandon C. , Singh Jarnail , Hamilton Deborah , McKenzie Erica , O’Malley Bert W. , Li Daqing 
Published: October 2022

AbstractA mouse model with cisplatin-induced ototoxicity was used in addition to human samples from the ITMAT Biobank at the University of Pennsylvania. Mouse auditory brainstem responses (ABR), inner ear histology, perilymph cisplatin sampling, and measurement of serum prestin via ELISA were performed. Human serum prestin level was measured via ELISA in patients with otological issues after cisplatin treatment and compared to matched controls. Serum prestin was significantly elevated before ABR threshold shifts in mice exposed to cisplatin compared to control mice. Prestin concentration also correlated with the severity of hearing threshold shifts in mice. After an extended rest post-cisplatin treatment, prestin returned to baseline levels in mice and humans. Prestin was significantly elevated in the serum before the onset of objective hearing loss and correlated with the severity of hearing damage indicating that prestin may function as an effective biomarker of cisplatin-induced ototoxicity. Human serum prestin levels responded similarly to mice > 3 weeks from ototoxic exposure with decreased levels of prestin in the serum.