bluuebunny/crossref_metadata_2025_split huggingface dataset:
ACE2 expression in adipose tissue is associated with cardio-metabolic risk factors and cell type composition—implications for COVID-19
Authors: El-Sayed Moustafa Julia S. , Jackson Anne U. , Brotman Sarah M. , Guan Li , Villicaña Sergio , Roberts Amy L. , Zito Antonino , Bonnycastle Lori , Erdos Michael R. , Narisu Narisu , Stringham Heather M. , Welch Ryan , Yan Tingfen , Lakka Timo , Parker Stephen , Tuomilehto Jaakko , Seow Jeffrey , Graham Carl , Huettner Isabella , Acors Sam , Kouphou Neophytos , Wadge Samuel , Duncan Emma L. , Steves Claire J. , Doores Katie J. , Malim Michael H. , Collins Francis S. , Pajukanta Päivi , Boehnke Michael , Koistinen Heikki A. , Laakso Markku , Falchi Mario , Bell Jordana T. , Scott Laura J. , Mohlke Karen L. , Small Kerrin S. 
Published: May 2022

Abstract
Background
COVID-19 severity varies widely. Although some demographic and cardio-metabolic factors, including age and obesity, are associated with increasing risk of severe illness, the underlying mechanism(s) are uncertain.

Subjects/methods
In a meta-analysis of three independent studies of 1471 participants in total, we investigated phenotypic and genetic factors associated with subcutaneous adipose tissue expression of Angiotensin I Converting Enzyme 2 (ACE2), measured by RNA-Seq, which acts as a receptor for SARS-CoV-2 cellular entry.

Results
Lower adipose tissue ACE2 expression was associated with multiple adverse cardio-metabolic health indices, including type 2 diabetes (T2D) (P = 9.14 × 10−6), obesity status (P = 4.81 × 10−5), higher serum fasting insulin (P = 5.32 × 10−4), BMI (P = 3.94 × 10−4), and lower serum HDL levels (P = 1.92 × 10−7). ACE2 expression was also associated with estimated proportions of cell types in adipose tissue: lower expression was associated with a lower proportion of microvascular endothelial cells (P = 4.25 × 10−4) and higher proportion of macrophages (P = 2.74 × 10−5). Despite an estimated heritability of 32%, we did not identify any proximal or distal expression quantitative trait loci (eQTLs) associated with adipose tissue ACE2 expression.

Conclusions
Our results demonstrate that individuals with cardio-metabolic features known to increase risk of severe COVID-19 have lower background ACE2 levels in this highly relevant tissue. Reduced adipose tissue ACE2 expression may contribute to the pathophysiology of cardio-metabolic diseases, as well as the associated increased risk of severe COVID-19.
GLI1 activates pro-fibrotic pathways in myelofibrosis fibrocytes
Authors: Manshouri Taghi , Veletic Ivo , Li Ping , Yin C. Cameron , Post Sean M. , Verstovsek Srdan , Estrov Zeev 
Published: May 2022

AbstractBone marrow (BM) fibrosis was thought to be induced exclusively by mesenchymal stromal cells (MSCs). However, we and others found that neoplastic fibrocytes induce BM fibrosis in myelofibrosis (MF). Because glioma-associated oncogene-1 (GLI1), an effector of the Hedgehog pathway, plays a role in the induction of BM fibrosis, we wondered whether GLI1 affects fibrocyte-induced BM fibrosis in MF. Multiplexed fluorescence immunohistochemistry analysis of MF patients’ BM detected high levels of GLI1 in MF fibrocytes compared to MSCs or normal fibrocytes. Immunostaining, RNA in situ hybridization, gene expression analysis, and western immunoblotting detected high levels of GLI1 and GLI1-induced matrix metalloproteases (MMP) 2 and 9 in MF patients BM-derived cultured fibrocytes. Similarly, MF patients’ BM-derived GLI1+ fibrocytes were found in BMs and spleens of MF xenograft mice. GLI1 silencing reduced the levels of MMP2/9, phosphorylated SMAD2/3, and procollagen-I, and knockdown or inhibition of GLI1 decreased fibrocyte formation and induced apoptosis of both fibrocytes and fibrocyte progenitors. Because Janus kinase (JAK)2-induced STAT3 is constitutively activated in MF and because STAT3 induces GLI1 expression, we sought to determine whether STAT3 activates GLI1 in MF fibrocytes. Imaging analysis detected phosphotyrosine STAT3 in MF patients’ BM fibrocytes, and transfection of fibrocytes with STAT3-siRNA or treatment with a JAK1/2 inhibitor ruxolitinib reduced GLI1 and MMP2/9 levels. Chromatin immunoprecipitation and a luciferase assay revealed that STAT3 induced the expression of the GLI1 gene in both MF BM fibrocytes and fibrocyte progenitors. Together, our data suggest that STAT3-activated GLI1 contributes to the induction of BM fibrosis in MF.
Oncogenic circTICRR suppresses autophagy via binding to HuR protein and stabilizing GLUD1 mRNA in cervical cancer
Authors: Zhu Tingjia , Cen Yixuan , Chen Zhuoye , Zhang Yanan , Zhao Lu , Wang Jiaying , Lu Weiguo , Xie Xing , Wang Xinyu 
Published: May 2022

AbstractCircular RNAs (circRNAs) are critical regulators in the occurrence and development of numerous cancers, in which abnormal autophagy plays a key role. However, the potential involvement of circRNAs in autophagy is largely unknown. Here, we identified the overexpression of circTICRR, a circular RNA, in cervical cancer. In vitro experiments showed that knockdown of circTICRR activated autophagy, and consequently promoted apoptosis and inhibited proliferation in cervical cancer cells, and vice versa. CircTICRR interacted with HuR protein via binding to F287/F289 in the RRM3 domain of HuR, stabilizing GLUD1 mRNA and elevating the level of GLUD1 protein. In vivo experiments revealed that knockdown of circTICRR suppressed the growth of transplanted tumors. An inhibitory peptide specific to the binding site between circTICRR and HuR protein promoted autophagy, induced apoptosis, suppressed proliferation in cervical cancer cells, and inhibited the growth of xenografts. Our findings suggest that circTICRR acts as an oncogene in cervical cancer and the interaction between circTICRR and HuR protein may be a potential target in cervical cancer therapeutics.
Role of magnetostriction on power losses in nanocrystalline soft magnets
Authors: Tsukahara Hiroshi , Imamura Hiroshi , Mitsumata Chiharu , Suzuki Kiyonori , Ono Kanta 
Published: May 2022

AbstractSoft magnetic materials are key materials for the magnetic cores used in motors and generators. To improve the energy efficiency of magnetic cores, it is important to understand the mechanism of energy loss under oscillating magnetic fields. Here, we clarify the mechanism of energy loss in nanocrystalline soft magnetic materials (NSMMs), which are candidates for energy-efficient magnetic cores. To investigate the energy loss of an NSMM, it is necessary to consider the interaction between the magnetization and the crystal lattice, i.e., magnetostriction. However, the random distributions of crystalline axes in nanocrystals hinder magnetostriction calculation. We developed a micromagnetic simulation program by formulating the effective fields due to magnetostriction in randomly oriented nanocrystallites. We performed micromagnetic simulations of NSMMs under an oscillating magnetic field and found that the magnetic energy of the moving domain wall dissipates into the elastic energy of the crystal lattice through magnetostriction. These results can enable the design of highly energy-efficient NSMMs.
Triplet-radical spin entanglement: potential of molecular materials for high-temperature quantum information processing
Authors: Ma Lin , Chang Jiawei , Chen Qiuyuan , Zou Taoyu , Wu Wei , Wang Hai 
Published: May 2022

AbstractRecently, spin-bearing molecules have been experimentally demonstrated to have great potential as building blocks for quantum information processing due to their substantial advantages including tunability, portability, and scalability. Here, we propose a theoretical model based on the theory of open quantum systems for spin dynamics in a molecule containing one radical, which can interact with the triplet state arising from another part of the molecule owing to optical excitation and intersystem crossing. With the initial state being a classical mixture of a radical $$\frac{1}{2}$$

1

2

-spin, the exchange interaction between the radical and the triplet produces a spin coherent state, which could potentially be used for a qubit-qutrit quantum entangling gate. Our calculations for the time-resolved electron paramagnetic resonance spectra showed good qualitative agreement with the related experimental results for radical-bearing molecules at high temperature (~77 K, the boiling point of liquid nitrogen). This work therefore lays a solid theoretical cornerstone for optically driven quantum gate operations in radical-bearing molecular materials, aiming toward high-temperature quantum information processing.
Holocene melting of the West Antarctic Ice Sheet driven by tropical Pacific warming
Authors: Sproson Adam D. , Yokoyama Yusuke , Miyairi Yosuke , Aze Takahiro , Totten Rebecca L. 
Published: May 2022

AbstractThe primary Antarctic contribution to modern sea-level rise is glacial discharge from the Amundsen Sea sector of the West Antarctic Ice Sheet. The main processes responsible for ice mass loss include: (1) ocean-driven melting of ice shelves by upwelling of warm water onto the continental shelf; and (2) atmospheric-driven surface melting of glaciers along the Antarctic coast. Understanding the relative influence of these processes on glacial stability is imperative to predicting sea-level rise. Employing a beryllium isotope-based reconstruction of ice-shelf history, we demonstrate that glaciers flowing into the Amundsen Sea Embayment underwent melting and retreat between 9 and 6 thousand years ago. Despite warm ocean water influence, this melting event was mainly forced by atmospheric circulation changes over continental West Antarctica, linked via a Rossby wave train to tropical Pacific Ocean warming. This millennial-scale glacial history may be used to validate contemporary ice-sheet models and improve sea-level projections.
Entropy and crystal-facet modulation of P2-type layered cathodes for long-lasting sodium-based batteries
Authors: Fu Fang , Liu Xiang , Fu Xiaoguang , Chen Hongwei , Huang Ling , Fan Jingjing , Le Jiabo , Wang Qiuxiang , Yang Weihua , Ren Yang , Amine Khalil , Sun Shi-Gang , Xu Gui-Liang 
Published: May 2022

AbstractP2-type sodium manganese-rich layered oxides are promising cathode candidates for sodium-based batteries because of their appealing cost-effective and capacity features. However, the structural distortion and cationic rearrangement induced by irreversible phase transition and anionic redox reaction at high cell voltage (i.e., >4.0 V) cause sluggish Na-ion kinetics and severe capacity decay. To circumvent these issues, here, we report a strategy to develop P2-type layered cathodes via configurational entropy and ion-diffusion structural tuning. In situ synchrotron X-ray diffraction combined with electrochemical kinetic tests and microstructural characterizations reveal that the entropy-tuned Na0.62Mn0.67Ni0.23Cu0.05Mg0.07Ti0.01O2 (CuMgTi-571) cathode possesses more {010} active facet, improved structural and thermal stability and faster anionic redox kinetics compared to Na0.62Mn0.67Ni0.37O2. When tested in combination with a Na metal anode and a non-aqueous NaClO4-based electrolyte solution in coin cell configuration, the CuMgTi-571-based positive electrode enables an 87% capacity retention after 500 cycles at 120 mA g−1 and about 75% capacity retention after 2000 cycles at 1.2 A g−1.
Free charge photogeneration in a single component high photovoltaic efficiency organic semiconductor
Authors: Price Michael B. , Hume Paul A. , Ilina Aleksandra , Wagner Isabella , Tamming Ronnie R. , Thorn Karen E. , Jiao Wanting , Goldingay Alison , Conaghan Patrick J. , Lakhwani Girish , Davis Nathaniel J. L. K. , Wang Yifan , Xue Peiyao , Lu Heng , Chen Kai , Zhan Xiaowei , Hodgkiss Justin M. 
Published: May 2022

AbstractOrganic photovoltaics (OPVs) promise cheap and flexible solar energy. Whereas light generates free charges in silicon photovoltaics, excitons are normally formed in organic semiconductors due to their low dielectric constants, and require molecular heterojunctions to split into charges. Recent record efficiency OPVs utilise the small molecule, Y6, and its analogues, which – unlike previous organic semiconductors – have low band-gaps and high dielectric constants. We show that, in Y6 films, these factors lead to intrinsic free charge generation without a heterojunction. Intensity-dependent spectroscopy reveals that 60–90% of excitons form free charges at AM1.5 light intensity. Bimolecular recombination, and hole traps constrain single component Y6 photovoltaics to low efficiencies, but recombination is reduced by small quantities of donor. Quantum-chemical calculations reveal strong coupling between exciton and CT states, and an intermolecular polarisation pattern that drives exciton dissociation. Our results challenge how current OPVs operate, and renew the possibility of efficient single-component OPVs.
Parts–per–million of ruthenium catalyze the selective chain–walking reaction of terminal alkenes
Authors: Sanz-Navarro Sergio , Mon Marta , Doménech-Carbó Antonio , Greco Rossella , Sánchez-Quesada Jorge , Espinós-Ferri Estela , Leyva-Pérez Antonio 
Published: May 2022

AbstractThe chain–walking of terminal alkenes (also called migration or isomerization reaction) is currently carried out in industry with unselective and relatively costly processes, to give mixtures of alkenes with significant amounts of oligomerized, branched and reduced by–products. Here, it is shown that part–per–million amounts of a variety of commercially available and in–house made ruthenium compounds, supported or not, transform into an extremely active catalyst for the regioselective migration of terminal alkenes to internal positions, with yields and selectivity up to >99% and without any solvent, ligand, additive or protecting atmosphere required, but only heating at temperatures >150 °C. The resulting internal alkene can be prepared in kilogram quantities, ready to be used in nine different organic reactions without any further treatment.
Codon-specific Ramachandran plots show amino acid backbone conformation depends on identity of the translated codon
Authors: Rosenberg Aviv A. , Marx Ailie , Bronstein Alex M. 
Published: May 2022

AbstractSynonymous codons translate into chemically identical amino acids. Once considered inconsequential to the formation of the protein product, there is evidence to suggest that codon usage affects co-translational protein folding and the final structure of the expressed protein. Here we develop a method for computing and comparing codon-specific Ramachandran plots and demonstrate that the backbone dihedral angle distributions of some synonymous codons are distinguishable with statistical significance for some secondary structures. This shows that there exists a dependence between codon identity and backbone torsion of the translated amino acid. Although these findings cannot pinpoint the causal direction of this dependence, we discuss the vast biological implications should coding be shown to directly shape protein conformation and demonstrate the usefulness of this method as a tool for probing associations between codon usage and protein structure. Finally, we urge for the inclusion of exact genetic information into structural databases.
Engineered Cas12i2 is a versatile high-efficiency platform for therapeutic genome editing
Authors: McGaw Colin , Garrity Anthony J. , Munoz Gabrielle Z. , Haswell Jeffrey R. , Sengupta Sejuti , Keston-Smith Elise , Hunnewell Pratyusha , Ornstein Alexa , Bose Mishti , Wessells Quinton , Jakimo Noah , Yan Paul , Zhang Huaibin , Alfonse Lauren E. , Ziblat Roy , Carte Jason M. , Lu Wei-Cheng , Cerchione Derek , Hilbert Brendan , Sothiselvam Shanmugapriya , Yan Winston X. , Cheng David R. , Scott David A. , DiTommaso Tia , Chong Shaorong 
Published: May 2022

AbstractThe CRISPR-Cas type V-I is a family of Cas12i-containing programmable nuclease systems guided by a short crRNA without requirement for a tracrRNA. Here we present an engineered Type V-I CRISPR system (Cas12i), ABR-001, which utilizes a tracr-less guide RNA. The compact Cas12i effector is capable of self-processing pre-crRNA and cleaving dsDNA targets, which facilitates versatile delivery options and multiplexing, respectively. We apply an unbiased mutational scanning approach to enhance initially low editing activity of Cas12i2. The engineered variant, ABR-001, exhibits broad genome editing capability in human cell lines, primary T cells, and CD34+ hematopoietic stem and progenitor cells, with both robust efficiency and high specificity. In addition, ABR-001 achieves a high level of genome editing when delivered via AAV vector to HEK293T cells. This work establishes ABR-001 as a versatile, specific, and high-performance platform for ex vivo and in vivo gene therapy.
Inflated pyroclasts in proximal fallout deposits reveal abrupt transitions in eruption behaviour
Authors: Jones Thomas J. , Le Moigne Yannick , Russell James K. , Williams-Jones Glyn , Giordano Daniele , Dingwell Donald B. 
Published: May 2022

AbstractDuring explosive eruption of low viscosity magmas, pyroclasts are cooled predominantly by forced convection. Depending on the cooling efficiency relative to other timescales, a spectrum of deposits can be formed. Deposition of hot clasts, above their glass transition temperature, can form spatter mounds, ramparts and clastogenic lava flows. Clasts may also be deposited cold, producing tephra cones and blankets. Thus, the deposit and pyroclast type can provide information about eruption dynamics and magma properties. Here we examine pyroclasts from Tseax volcano, British Columbia, Canada. These newly identified inflated pyroclasts, are fluidal in form, have undergone post-depositional expansion, and are found juxtaposed with scoria. Detailed field, chemical and textural observations, coupled with high temperature rheometry and thermal modelling, reveal that abrupt transitions in eruptive behaviour — from lava fountaining to low-energy bubble bursts — created these pyroclastic deposits. These findings should help identify transitions in eruptive behaviour at other mafic volcanoes worldwide.
Predicting the failure of two-dimensional silica glasses
Authors: Font-Clos Francesc , Zanchi Marco , Hiemer Stefan , Bonfanti Silvia , Guerra Roberto , Zaiser Michael , Zapperi Stefano 
Published: May 2022

AbstractBeing able to predict the failure of materials based on structural information is a fundamental issue with enormous practical and industrial relevance for the monitoring of devices and components. Thanks to recent advances in deep learning, accurate failure predictions are becoming possible even for strongly disordered solids, but the sheer number of parameters used in the process renders a physical interpretation of the results impossible. Here we address this issue and use machine learning methods to predict the failure of simulated two dimensional silica glasses from their initial undeformed structure. We then exploit Gradient-weighted Class Activation Mapping (Grad-CAM) to build attention maps associated with the predictions, and we demonstrate that these maps are amenable to physical interpretation in terms of topological defects and local potential energies. We show that our predictions can be transferred to samples with different shape or size than those used in training, as well as to experimental images. Our strategy illustrates how artificial neural networks trained with numerical simulation results can provide interpretable predictions of the behavior of experimentally measured structures.
Gene flow in a pioneer plant metapopulation (Myricaria germanica) at the catchment scale in a fragmented alpine river system
Authors: Fink Sabine , Hoppler-Wiedmer Andrea , Zengerer Veronika , Egger Gregory , Schletterer Martin , Scheidegger Christoph 
Published: May 2022

AbstractRiver alterations for natural hazard mitigation and land reclamation result in habitat decline and fragmentation for riparian plant species. Extreme events such as floods are responsible for additional local species loss or population decline. Tributaries might provide refugia and subsequent source populations for the colonization of downstream sites in connected riverine networks with metapopulations of plant species. In this study, we analyzed the metapopulation structure of the endangered riparian shrub speciesMyricaria germanicaalong the river Isel, Austria, which is part of the Natura 2000 network, and its tributaries. The use of 22 microsatellite markers allowed us to assess the role of tributaries and single populations as well as gene flow up- and downstream. The analysis of 1307 individuals from 45 sites shows the influence of tributaries to the genetic diversity at Isel and no overall isolation by distance pattern. Ongoing bidirectional gene flow is revealed by the detection of first-generation migrants in populations of all tributaries as well as the river Isel, supporting upstream dispersal by wind (seeds) or animals (seeds and pollen). However, some populations display significant population declines and high inbreeding, and recent migration rates are non-significant or low. The genetic pattern at the mouth of river Schwarzach into Isel and shortly thereafter river Kalserbach supports the finding that geographically close populations remain connected and that tributaries can form important refugia forM. germanicain the dynamic riverine network. Conservation and mitigation measures should therefore focus on providing sufficient habitat along tributaries of various size allowing pioneer plants to cope with extreme events in the main channel, especially as they are expected to be more frequent under changing climate.
The impact of endoscopic activity on musculoskeletal disorders of high-volume endoscopists in Germany
Authors: Sturm N. , Leukert J. , Perkhofer L. , Hann A. , Wagner M. , Mayer B. , Seufferlein T. , Mayerle J. , Schulz C. , Meining A. , Kraft E. , Walter Benjamin M. 
Published: May 2022

AbstractPhysical stress is common in GI endoscopists, leading to musculoskeletal disorders. Considering the increasing complexity of interventional GI endoscopy with prolonged examination time, work-related musculoskeletal disorders have come into focus. However, data on work-related health stress in German endoscopists are elusive. The aim of this study was therefore to investigate the prevalence and consequences of work-related musculoskeletal disorders in German endoscopists. A 24-item questionnaire on endoscopy-associated musculoskeletal disorders and standardized pain assessment was developed by an interdisciplinary team of endoscopists and sports medics. The survey was distributed online by the leading German societies for gastroenterology and endoscopy. Overall, 151 German practicing endoscopists took part in the study. Regarding the average number of endoscopic procedures per week, the study collective consisted mainly of high-volume endoscopists. The survey showed that most participants suffered from general musculoskeletal disorders (82.8%) and from work-related musculoskeletal disorders (76.8%). The most affected body parts were the neck, low back, thumb, and shoulder. Temporary absence from work due to symptoms was reported by 9.9% of the respondents. Over 30% of participating endoscopists stated the need for analgesics or physiotherapy due to musculoskeletal disorders. Age, professional experience and work time were identified as relevant risk factors for musculoskeletal health issues. A high number of German endoscopists are affected by musculoskeletal disorders due to specific working postures and repetitive movements with a large impact on personal health. Further interventional studies are mandatory to improve the risk prevention of endoscopic activity.