bluuebunny/crossref_metadata_2025_split huggingface dataset:
HOMEFOOD randomized trial—beneficial effects of 6-month nutrition therapy on body weight and physical function in older adults at risk for malnutrition after hospital discharge
Authors: Blondal B. S. , Geirsdottir O. G. , Beck A. M. , Halldorsson T. I. , Jonsson P. V. , Sveinsdottir K. , Ramel A. 
Published: August 2022

Abstract
Background/objectives
Malnutrition is common among older adults. Dietary intervention studies in older adults aiming to improve anthropometrics measures and physical function have been inconsistent. We aimed to investigate the effects of nutrition therapy in combination with home delivered meals and oral nutritional supplements (ONS) in community-dwelling older adults discharged from hospital.

Methods
A total of 106 participants (>65 years) were randomized into the intervention group (n = 53) and into the control group (n = 53). The intervention group received individual nutrition therapy (five in person visits and three phone calls) and freely delivered energy- and protein- rich foods, while the control group received standard care. Dietary intake, anthropometrics, and short physical performance battery (SPPB) were assessed at baseline and at endpoint.

Results
Energy intake at baseline was similar in both groups (~1500 kcal at the hospital) but there was a significant increase in energy intake and body weight in the intervention group (+919 kcal/day and 1.7 kg, P < 0.001 in both cases) during the study period, compared to a significant decrease in both measures among controls (−815 kcal/day and −3.5 kg, P < 0.001 in both cases). SPPB score increased significantly in the intervention group while no changes were observed among controls.

Conclusions
Most Icelandic older adults experience substantial weight loss after hospital discharge when receiving current standard care. However, a 6-month multi-component nutrition therapy, provided by a clinical nutritionist in combination with freely delivered supplemental energy- and protein-dense foods has beneficial effects on body weight, physical function, and nutritional status.

Study registration
This study was registered at ClinicalTrials.gov (NCT03995303).
Specificity of the Hox member Deformed is determined by transcription factor levels and binding site affinities
Authors: Pinto Pedro B. , Domsch Katrin , Gao Xuefan , Wölk Michaela , Carnesecchi Julie , Lohmann Ingrid 
Published: August 2022

AbstractHox proteins have similar binding specificities in vitro, yet they control different morphologies in vivo. This paradox has been partially solved with the identification of Hox low-affinity binding sites. However, anterior Hox proteins are more promiscuous than posterior Hox proteins, raising the question how anterior Hox proteins achieve specificity. We use the AP2x enhancer, which is activated in the maxillary head segment by the Hox TF Deformed (Dfd). This enhancer lacks canonical Dfd-Exd sites but contains several predicted low-affinity sites. Unexpectedly, these sites are strongly bound by Dfd-Exd complexes and their conversion into optimal Dfd-Exd sites results only in a modest increase in binding strength. These small variations in affinity change the sensitivity of the enhancer to different Dfd levels, resulting in perturbed AP-2 expression and maxillary morphogenesis. Thus, Hox-regulated morphogenesis seems to result from the co-evolution of Hox binding affinity and Hox dosage for precise target gene regulation.
AMPK deficiency in smooth muscles causes persistent pulmonary hypertension of the new-born and premature death
Authors: Moral-Sanz Javier , Lewis Sophronia A. , MacMillan Sandy , Meloni Marco , McClafferty Heather , Viollet Benoit , Foretz Marc , del-Pozo Jorge , Mark Evans A. 
Published: August 2022

AbstractAMPK has been reported to facilitate hypoxic pulmonary vasoconstriction but, paradoxically, its deficiency precipitates pulmonary hypertension. Here we show that AMPK-α1/α2 deficiency in smooth muscles promotes persistent pulmonary hypertension of the new-born. Accordingly, dual AMPK-α1/α2 deletion in smooth muscles causes premature death of mice after birth, associated with increased muscularisation and remodeling throughout the pulmonary arterial tree, reduced alveolar numbers and alveolar membrane thickening, but with no oedema. Spectral Doppler ultrasound indicates pulmonary hypertension and attenuated hypoxic pulmonary vasoconstriction. Age-dependent right ventricular pressure elevation, dilation and reduced cardiac output was also evident. KV1.5 potassium currents of pulmonary arterial myocytes were markedly smaller under normoxia, which is known to facilitate pulmonary hypertension. Mitochondrial fragmentation and reactive oxygen species accumulation was also evident. Importantly, there was no evidence of systemic vasculopathy or hypertension in these mice. Moreover, hypoxic pulmonary vasoconstriction was attenuated by AMPK-α1 or AMPK-α2 deletion without triggering pulmonary hypertension.
Tropical volcanoes synchronize eastern Canada with Northern Hemisphere millennial temperature variability
Authors: Wang Feng , Arseneault Dominique , Boucher Étienne , Gennaretti Fabio , Yu Shulong , Zhang Tongwen 
Published: August 2022

AbstractAlthough global and Northern Hemisphere temperature reconstructions are coherent with climate model simulations over the last millennium, reconstructed temperatures tend to diverge from simulations at smaller spatial scales. Yet, it remains unclear to what extent these regional peculiarities reflect region-specific internal climate variability or inadequate proxy coverage and quality. Here, we present a high-quality, millennial-long summer temperature reconstruction for northeastern North America, based on maximum latewood density, the most temperature-sensitive tree-ring proxy. Our reconstruction shows that a large majority (31 out of 44) of the coldest extremes can be attributed to explosive volcanic eruptions, with more persistent cooling following large tropical than extratropical events. These forced climate variations synchronize regional summer temperatures with hemispheric reconstructions and simulations at the multidecadal time scale. Our study highlights that tropical volcanism is the major driver of multidecadal temperature variations across spatial scales.
BRAT1 links Integrator and defective RNA processing with neurodegeneration
Authors: Cihlarova Zuzana , Kubovciak Jan , Sobol Margarita , Krejcikova Katerina , Sachova Jana , Kolar Michal , Stanek David , Barinka Cyril , Yoon Grace , Caldecott Keith W. , Hanzlikova Hana 
Published: August 2022

AbstractMutations in BRAT1, encoding BRCA1-associated ATM activator 1, have been associated with neurodevelopmental and neurodegenerative disorders characterized by heterogeneous phenotypes with varying levels of clinical severity. However, the underlying molecular mechanisms of disease pathology remain poorly understood. Here, we show that BRAT1 tightly interacts with INTS9/INTS11 subunits of the Integrator complex that processes 3’ ends of various noncoding RNAs and pre-mRNAs. We find that Integrator functions are disrupted by BRAT1 deletion. In particular, defects in BRAT1 impede proper 3’ end processing of UsnRNAs and snoRNAs, replication-dependent histone pre-mRNA processing, and alter the expression of protein-coding genes. Importantly, impairments in Integrator function are also evident in patient-derived cells from BRAT1 related neurological disease. Collectively, our data suggest that defects in BRAT1 interfere with proper Integrator functions, leading to incorrect expression of RNAs and proteins, resulting in neurodegeneration.
A ribosomally synthesised and post-translationally modified peptide containing a β-enamino acid and a macrocyclic motif
Authors: Wang Shan , Lin Sixing , Fang Qing , Gyampoh Roland , Lu Zhou , Gao Yingli , Clarke David J. , Wu Kewen , Trembleau Laurent , Yu Yi , Kyeremeh Kwaku , Milne Bruce F. , Tabudravu Jioji , Deng Hai 
Published: August 2022

AbstractRibosomally synthesized and post-translationally modified peptides (RiPPs) are structurally complex natural products with diverse bioactivities. Here we report discovery of a RiPP, kintamdin, for which the structure is determined through spectroscopy, spectrometry and genomic analysis to feature a bis-thioether macrocyclic ring and a β-enamino acid residue. Biosynthetic investigation demonstrated that its pathway relies on four dedicated proteins: phosphotransferase KinD, Lyase KinC, kinase homolog KinH and flavoprotein KinI, which share low homologues to enzymes known in other RiPP biosynthesis. During the posttranslational modifications, KinCD is responsible for the formation of the characteristic dehydroamino acid residues including the β-enamino acid residue, followed by oxidative decarboxylation on the C-terminal Cys and subsequent cyclization to provide the bis-thioether ring moiety mediated by coordinated action of KinH and KinI. Finally, conserved genomic investigation allows further identification of two kintamdin-like peptides among the kin-like BGCs, suggesting the occurrence of RiPPs from actinobacteria.
Association between BNT162b2 vaccination and reported incidence of post-COVID-19 symptoms: cross-sectional study 2020-21, Israel
Authors: Kuodi Paul , Gorelik Yanay , Zayyad Hiba , Wertheim Ofir , Wiegler Karine Beiruti , Abu Jabal Kamal , Dror Amiel A. , Nazzal Saleh , Glikman Daniel , Edelstein Michael 
Published: August 2022

AbstractThe effectiveness of Coronavirus disease 2019 (COVID-19) vaccines against the long-term COVID-19 symptoms expressed by a substantial proportion of patients is not well understood. We determined whether vaccination with the BNT162b2 mRNA vaccine was associated with incidence of reporting long-term symptoms post-SARS-CoV-2 infection. We invited individuals PCR-tested for SARS-CoV-2 infection at participating hospitals between March 2020 and November 2021 to fill an online questionnaire that included information about demographics, acute COVID-19 episode and symptoms they were currently experiencing. Using binomial regression, we compared vaccinated individuals with those unvaccinated and those uninfected, in terms of post-acute self-reported symptoms. Of the 951 infected, 637(67%) were vaccinated. In the study population, the most prevalent symptoms were: fatigue (22%), headache (20%), weakness of limbs (13%), and persistent muscle pain (10%). After adjusting for age, time from beginning of symptoms to responding to the survey, and baseline symptoms, those who received two vaccine doses were less likely than unvaccinated individuals to report any of these symptoms (fatigue, headache, weakness of limbs, persistent muscle pain) by 62%, 50%, 62%, and 66% respectively, (Risk ratios 0.38, 0.50, 0.38, 0.34,p < 0.04 in the listed sequence). Compared to the 2447 included individuals who never reported SARS-CoV-2 infection, double-vaccinated participants were no more likely to report any of the mentioned symptoms. Vaccination with 2+ doses of BNT162b2 was associated with a reduced risk of reporting most of the common post-acute COVID-19 symptoms. Our results suggest that BNT162b2 vaccination may have a protective effect against longer term COVID-19 symptoms.
Irrelevant positive emotional information facilitates response inhibition only under a high perceptual load
Authors: Pandey Shubham , Gupta Rashmi 
Published: August 2022

AbstractResponse inhibition involves suppressing those responses that are no longer needed. Previous research has separately studied the role of attentional resources and emotional information in response inhibition. Here, we simultaneously manipulate attentional resources and emotional information to investigate the interactive role of emotional information and attentional resources. Attentional resources were manipulated by changing the levels of perceptual load (low and high) of go signals. Emotional information was manipulated by changing the emotional content (irrelevant positive and negative emotional information) of the stop signals. Participants made a go response based on searching for a target letter in conditions of either low perceptual load or high perceptual load. They withheld their response on the presentation of a stop signal. The stop-signal stimulus was selected from two classes: arousal matched positive and negative IAPS images (Experiment 1) and happy, angry, and neutral faces (Experiment 2). The result showed a consistent interaction pattern of perceptual load and emotional information across the two experiments, such that irrelevant positive emotional information consistently improved inhibitory control, albeit only under high load. These results have theoretical implications for understanding the nature of emotional information and their interaction with attentional resources in cognitive control functions.
Polyp segmentation with consistency training and continuous update of pseudo-label
Authors: Park Hyun-Cheol , Poudel Sahadev , Ghimire Raman , Lee Sang-Woong 
Published: August 2022

AbstractPolyp segmentation has accomplished massive triumph over the years in the field of supervised learning. However, obtaining a vast number of labeled datasets is commonly challenging in the medical domain. To solve this problem, we employ semi-supervised methods and suitably take advantage of unlabeled data to improve the performance of polyp image segmentation. First, we propose an encoder-decoder-based method well suited for the polyp with varying shape, size, and scales. Second, we utilize the teacher-student concept of training the model, where the teacher model is the student model’s exponential average. Third, to leverage the unlabeled dataset, we enforce a consistency technique and force the teacher model to generate a similar output on the different perturbed versions of the given input. Finally, we propose a method that upgrades the traditional pseudo-label method by learning the model with continuous update of pseudo-label. We show the efficacy of our proposed method on different polyp datasets, and hence attaining better results in semi-supervised settings. Extensive experiments demonstrate that our proposed method can propagate the unlabeled dataset’s essential information to improve performance.
3D transcranial ultrasound localization microscopy for discrimination between ischemic and hemorrhagic stroke in early phase
Authors: Chavignon Arthur , Hingot Vincent , Orset Cyrille , Vivien Denis , Couture Olivier 
Published: August 2022

AbstractEarly diagnosis is a critical part of the emergency care of cerebral hemorrhages and ischemia. A rapid and accurate diagnosis of strokes reduces the delays to appropriate treatments and a better functional recovery. Currently, CTscan and MRI are the gold standards with constraints of accessibility, availability, and possibly some contraindications. The development of Ultrasound Localization Microscopy (ULM) has enabled new perspectives to conventional transcranial ultrasound imaging with increased sensitivity, penetration depth, and resolution. The possibility of volumetric imaging has increased the field-of-view and provided a more precise description of the microvascularisation. In this study, rats (n = 9) were subjected to thromboembolic ischemic stroke or intracerebral hemorrhages prior to volumetric ULM at the early phases after onsets. Although the volumetric ULM performed in the early phase of ischemic stroke revealed a large hypoperfused area in the cortical area of the occluded artery, it showed a more diffused hypoperfusion in the hemorrhagic model. Respective computations of a Microvascular Diffusion Index highlighted different patterns of perfusion loss during the first 24 h of these two strokes’ subtypes. Our study provides the first proof that this methodology should allow early discrimination between ischemic and hemorrhagic stroke with a potential toward diagnosis and monitoring in clinic.
Comparison of leg dynamic models for quadrupedal robots with compliant backbone
Authors: Parra Ricaurte E. A. , Pareja J. , Dominguez S. , Rossi C. 
Published: August 2022

AbstractMany quadrupeds are capable of power efficient gaits, especially trot and gallop, thanks to their flexible trunk. The oscillations of the system that includes the backbone, the tendons and musculature, store and release elastic energy, helping a smooth deceleration and a fast acceleration of the hindquarters and forequarters, which improves the dynamics of running and its energy efficiency. Forelegs and hindlegs play a key role in generating the bending moment in the trunk. In this paper we present our studies aimed at modeling and reproducing such phenomena for efficient quadrupedal robot locomotion. We propose a model, called mass-mass-spring model, that overcomes the limitation of existing models, and demonstrate that it allows studying how the masses of the legs generate a flexing force that helps the natural bending of the trunk during gallop. We apply our model to six animals, that adopt two different galloping patterns (called transverse androtatory), and compare their energy efficiency.
Spatiotemporal multi-scale modeling of radiopharmaceutical distributions in vascularized solid tumors
Authors: Kiani Shahvandi Mohammad , Soltani M. , Moradi Kashkooli Farshad , Saboury Babak , Rahmim Arman 
Published: August 2022

AbstractWe present comprehensive mathematical modeling of radiopharmaceutical spatiotemporal distributions within vascularized solid tumors. The novelty of the presented model is at mathematical level. From the mathematical viewpoint, we provide a general modeling framework for the process of radiopharmaceutical distribution in the tumor microenvironment to enable an analysis of the effect of various tumor-related parameters on the distribution of different radiopharmaceuticals. We argue that partial differential equations (PDEs), beyond conventional methods, including ODE-based kinetic compartment modeling, can be used to evaluate radiopharmaceutical distribution in both time and space. In addition, we consider the spatially-variable dynamic structure of tumor microvascular networks to simulate blood flow distribution. To examine the robustness of the model, the effects of microvessel density (MVD) and tumor size, as two important factors in tumor prognosis, on the radiopharmaceutical distribution within the tumor are investigated over time (in the present work, we focus on the radiopharmaceutical [18F]FDG, yet the framework is broadly applicable to radiopharmaceuticals). Results demonstrate that the maximum total uptake of [18F]FDG at all time frames occurs in the tumor area due to the high capillary permeability and lack of a functional lymphatic system. As the MVD of networks increases, the mean total uptake in the tumor is also enhanced, where the rate of diffusion from vessel to tissue has the highest contribution and the rate of convection transport has the lowest contribution. The results of this study can be used to better investigate various phenomena and bridge a gap among cancer biology, mathematical oncology, medical physics, and radiology.
N-glycosylation is crucial for trafficking and stability of SLC3A2 (CD98)
Authors: Console Lara , Scalise Mariafrancesca , Salerno Simona , Scanga Raffaella , Giudice Deborah , De Bartolo Loredana , Tonazzi Annamaria , Indiveri Cesare 
Published: August 2022

AbstractThe type II glycoprotein CD98 (SLC3A2) is a membrane protein with pleiotropic roles in cells, ranging from modulation of inflammatory processes, host–pathogen interactions to association with membrane transporters of the SLC7 family. The recent resolution of CD98 structure in complex with LAT1 showed that four Asn residues, N365, N381, N424, N506, harbour N-glycosylation moieties. Then, the role of N-glycosylation on CD98 trafficking and stability was investigated by combining bioinformatics, site-directed mutagenesis and cell biology approach. Single, double, triple and quadruple mutants of the four Asn exhibited altered electrophoretic mobility, with apparent molecular masses from 95 to 70 kDa. The quadruple mutant displayed a single band of 70 kDa corresponding to the unglycosylated protein. The presence in the membrane and the trafficking of CD98 were evaluated by a biotinylation assay and a brefeldin assay, respectively. Taken together, the results highlighted that the quadruple mutation severely impaired both the stability and the trafficking of CD98 to the plasma membrane. The decreased presence of CD98 at the plasma membrane, correlated with a lower presence of LAT1 (SLC7A5) and its transport activity. This finding opens new perspectives for human therapy. Indeed, the inhibition of CD98 trafficking would act synergistically with LAT1 inhibitors that are under clinical trial for anticancer therapy.
Automated segmentation and feature discovery of age-related macular degeneration and Stargardt disease via self-attended neural networks
Authors: Wang Ziyuan , Sadda Srinivas Reddy , Lee Aaron , Hu Zhihong Jewel 
Published: August 2022

AbstractAge-related macular degeneration (AMD) and Stargardt disease are the leading causes of blindness for the elderly and young adults respectively. Geographic atrophy (GA) of AMD and Stargardt atrophy are their end-stage outcomes. Efficient methods for segmentation and quantification of these atrophic lesions are critical for clinical research. In this study, we developed a deep convolutional neural network (CNN) with a trainable self-attended mechanism for accurate GA and Stargardt atrophy segmentation. Compared with traditional post-hoc attention mechanisms which can only visualize CNN features, our self-attended mechanism is embedded in a fully convolutional network and directly involved in training the CNN to actively attend key features for enhanced algorithm performance. We applied the self-attended CNN on the segmentation of AMD and Stargardt atrophic lesions on fundus autofluorescence (FAF) images. Compared with a preexisting regular fully convolutional network (the U-Net), our self-attended CNN achieved 10.6% higher Dice coefficient and 17% higher IoU (intersection over union) for AMD GA segmentation, and a 22% higher Dice coefficient and a 32% higher IoU for Stargardt atrophy segmentation. With longitudinal image data having over a longer time, the developed self-attended mechanism can also be applied on the visual discovery of early AMD and Stargardt features.
Regularity of colour statistics in explaining colour composition preferences in art paintings
Authors: Nakauchi Shigeki , Tamura Hideki 
Published: August 2022

AbstractThis study explores the role of colour statistics in painting preferences and tests the ‘matching-to-nature’ hypothesis which posits that the preference for the colour composition of paintings depends on the extent to which the paintings resemble the colour statistics of natural scenes. A preference judgement experiment was conducted with 31,353 participants using original and hue-rotated versions of 1,200 paintings. Multiple regression analyses were performed between the measured preferences and paintings’ colour statistics to reveal which colour statistics explained the preference data and to what extent. The colour statistics of art paintings that explained the preference data were compared to the colour statistics of natural scenes. The results identified the colour statistics that significantly contributed to explaining painting preferences, and the distributions of the paintings’ colour statistics systematically differed from those of natural scenes. These findings suggest that the human visual system encodes colour statistics to make aesthetic judgements based on the artistic merit of colour compositions, and not on their similarity to natural scenes.