bluuebunny/crossref_metadata_2025_split huggingface dataset:
Polygenic autoimmune disease risk alleles impacting B cell tolerance act in concert across shared molecular networks in mouse and in humans
Authors: Harley Isaac T. W. , Allison Kristen , Scofield R. Hal 
Published: August 2022

Most B cells produced in the bone marrow have some level of autoreactivity. Despite efforts of central tolerance to eliminate these cells, many escape to periphery, where in healthy individuals, they are rendered functionally non-responsive to restimulation through their antigen receptorviaa process termed anergy. Broad repertoire autoreactivity may reflect the chances of generating autoreactivity by stochastic use of germline immunoglobulin gene segments or active mechanisms may select autoreactive cells during egress to the naïve peripheral B cell pool. Likewise, it is unclear why in some individuals autoreactive B cell clones become activated and drive pathophysiologic changes in autoimmune diseases. Both of these remain central questions in the study of the immune system(s). In most individuals, autoimmune diseases arise from complex interplay of genetic risk factors and environmental influences. Advances in genome sequencing and increased statistical power from large autoimmune disease cohorts has led to identification of more than 200 autoimmune disease risk loci. It has been observed that autoantibodies are detectable in the serum years to decades prior to the diagnosis of autoimmune disease. Thus, current models hold that genetic defects in the pathways that control autoreactive B cell tolerance set genetic liability thresholds across multiple autoimmune diseases. Despite the fact these seminal concepts were developed in animal (especially murine) models of autoimmune disease, some perceive a disconnect between human risk alleles and those identified in murine models of autoimmune disease. Here, we synthesize the current state of the art in our understanding of human risk alleles in two prototypical autoimmune diseases – systemic lupus erythematosus (SLE) and type 1 diabetes (T1D) along with spontaneous murine disease models. We compare these risk networks to those reported in murine models of these diseases, focusing on pathways relevant to anergy and central tolerance. We highlight some differences between murine and human environmental and genetic factors that may impact autoimmune disease development and expression and may, in turn, explain some of this discrepancy. Finally, we show that there is substantial overlap between the molecular networks that define these disease states across species. Our synthesis and analysis of the current state of the field are consistent with the idea that the same molecular networks are perturbed in murine and human autoimmune disease. Based on these analyses, we anticipate that murine autoimmune disease models will continue to yield novel insights into how best to diagnose, prognose, prevent and treat human autoimmune diseases.
Eisenia arborea (Areschoung) domestication and mariculture development on the Pacific coast of Baja California, México
Authors: Zertuche-González José A. , Sandoval-Gil Jose M. , Sánchez-Barredo Mariana , Altamirano-Gómez Zarko , Guzmán-Calderón José M. , Rangel-Mendoza Laura K. , Ladah Lydia B. , Cruz-López Ricardo , Yarish Charles 
Published: August 2022

Eisenia arborea (sensu Ecklonia arborea) is the kelp with the greatest latitudinal distribution on the Northeastern Pacific Coast. It is harvested in Mexico in small amounts for abalone farm fodder and occasionally exported to Asia for human consumption. Because the high-energy environment where it naturally grows limits its sustainable harvest, we explored the domestication and cultivation of this kelp on the west coast of Baja California, Mexico. The life history of E. arborea was completed in the laboratory following traditional methods for kelp cultivation. Gametophytes became reproductive approximately 50 days after spore release and sporophytes were visible to the naked eye after 80 days. When sporophytes reached 2–3 cm, they were transplanted to two sites on long-line systems: in an open bay (Todos Santos Bay) and in a shallow coastal lagoon (San Quintín Bay). At both sites, full differentiation occurred 6 to 8 months after deployment, with fertile blades occurring within a year. Once individuals reached maximum size, blades were harvested by pruning. Monthly, regrowth of pruned blades and new blade addition were measured. Pruned individuals reached the same weight as controls in three months. On the basis of these results, a seasonal seeding program was implemented at a third site where the presence of natural Eisenia is rare due to the lack of hard substrate but was hypothesized to provide appropriate conditions for kelp cultivation (Santa María Bay). Cultures were deployed at three different depths and growth was correlated with season, depth, and temperature. Only cultures seeded in winter developed successfully at this site. This study shows that the culture of E. arborea in a variety of ocean conditions is possible; however, site selection and seasonality are important considerations. Because E. arborea is perennial, it can be harvested periodically during the year thereby increasing yield, and because it is the warmest tolerant kelp species, it is an ideal target for ocean farming and commercial cultivation, considering climate change.
Carbon cycling in the East Sea (Japan Sea): A review
Authors: Kim Minkyoung , Hwang Jeomshik , Kim Guebuem , Na Taehee , Kim Tae-Hoon , Hyun Jung-Ho 
Published: August 2022

The East Sea (also known as the Japan Sea; hereafter, EJS) is a semi-enclosed marginal sea surrounded by the Korean Peninsula, Russia, and the Japanese Islands. The EJS is connected to the Pacific through shallow straits. Thus, the EJS has its own thermohaline circulation and the characteristic biogeochemistry. The deep overturning circulation plays a critical role in carbon cycling including absorption of atmospheric CO2 and its sequestration into the interior of the sea. The turnover time of the deep EJS (&gt;1000 m) is ~ hundred years and probably varies depending on physical climate forcing. Thus, the effect of climate change on oceanic processes may be more easily detected in the EJS. In this paper, we summarize the current understanding of carbon cycling in the EJS. We focus especially on the Ulleung Basin in the southwestern EJS, from which more extensive data are available. Notable features of carbon cycling in the EJS include the following: primary productivity and the export/production ratio are higher than in the adjacent Pacific; the EJS is a net sink of atmospheric CO2 and anthropogenic CO2 content is ~1% of the dissolved inorganic carbon inventory; dissolved inorganic carbon in the sea interior is mostly supplied by organic matter decomposition rather than CaCO3 dissolution and thus, the deep waters are vulnerable to acidification; N:P molar ratio of the deep waters is ~13, lower than the Redfield ratio; concentration of dissolved organic carbon is significantly higher than in the oceans; and sediment resuspension and lateral transport is an important component of sinking particulate organic carbon (POC) flux. Another important feature is the temporal trends observed for the last few decades. For example, pH, calcium carbonate saturation status, and dissolved oxygen concentration in the sea interior have decreased, whereas dissolved inorganic carbon and likely, the inventory of anthropogenic CO2 have increased. These temporal trends have an implication on better understanding of the processes occurring more slowly in the oceans. Brief suggestions for future research that will improve our understanding of carbon cycling and its variability are provided at the end of the paper.
Superior gait performance and balance ability in Latin dancers
Authors: Liu Yen-Ting , Lin Ang-Chieh , Chen Szu-Fu , Shih Chih-Jen , Kuo Tien-Yun , Wang Fu-Cheng , Lee Pei-Hsin , Lee Adeline Peiling 
Published: August 2022

BackgroundLatin dance consists of various fast and stability-challenging movements that require constant body adjustments to maintain proper posture and balance. Although human gaits are assumed to be symmetrical, several factors can contribute to asymmetrical behavior of the lower extremities in healthy adults. These include lower limb dominance, ground reaction forces, lower limb muscle power, foot placement angle, and range of joint motion. Gait impairment can lead to a high risk of falling, diminished mobility, and even cognition impairment. We hypothesized that Latin dancers might have a more symmetric gait pattern and better balance ability than healthy non-dancer controls.MethodsWe investigated the impact of Latin dance training on gait behaviors and body balance. We recruited twenty Latin dancers and 22 normal healthy subjects to conduct walking experiments and one-leg stance tests, and we measured their kinematic data by inertial measurement units. We then defined four performance indexes to assess gait performance and body stability to quantify the potential advantages of dance training.ResultsWe found that the two gait asymmetric indexes during the walking test and the two performance indexes during the one-leg stance tests were better in Latin dancers compared with the healthy control group. The results confirmed the superiority of Latin dancers over the healthy control group in gait symmetry and balance stability. Our results suggest that Latin dancing training could effectively strengthen lower limb muscles and core muscle groups, thereby improving coordination and enhancing gait performance and balance.ConclusionLatin dance training can benefit gait performance and body balance. Further studies are needed to investigate the effect of Latin dance training on gait and balance outcomes in healthy subjects and patients with gait disorders.
A systematic review on time trend incidence of rheumatoid arthritis in outpatient rheumatology clinics
Authors: van Delft E. T. A. M. , Jamal Maha , den Braanker Hannah , Kuijper T. M. , Hazes J. M. W. , Lopes Barreto Deirisa , Weel-Koenders A. E. A. M. 
Published: August 2022

ObjectivesTo classify patients with rheumatoid arthritis (RA) in an earlier stage of the disease, the ACR/EULAR classification criteria were updated in 2010. These criteria might have led to an increased incidence of RA in the rheumatology clinic. Since a higher incidence increases the socio-economic burden of RA, it is worthwhile to evaluate whether there is a time effect.Materials and methodsA systematic review was conducted using Embase, Medline Ovid, Cochrane Central, and Web of Science from database inception to February 2021. Included were only articles that addressed incidence rates of rheumatoid arthritis from rheumatology outpatient clinics.ResultsOf the 6,289 publications only 243 publications on RA were found eligible for full-text review. Nine studies were included reporting incidence. The pooled incidence for RA was 11% (95% CI 6–16%) per year. Over time the incidence increased after the introduction of the 2010 ACR/EULAR classification criteria. Overall there was a high intragroup heterogeneity (I2 = 97.93%, p &lt; 0.001), caused by geographical area, study design and differences in case definitions.ConclusionAlthough the incidence seems to increase after the introduction of the 2010 ACR/EULAR criteria, no conclusions can be drawn on this time effect due to heterogeneity.
Characteristics of gut microbiota of term small gestational age infants within 1 week and their relationship with neurodevelopment at 6 months
Authors: Chen Xiaona , Yan Zheng , Liu Lili , Zhang Rui , Zhang Xiaojiao , Peng Cheng , Geng Yuehang , Zhou Faliang , Han Ying , Hou Xinlin 
Published: August 2022

IntroductionSmall for gestational age (SGA) infants are at a higher risk of neurodevelopmental delay than infants appropriate for gestational age (AGA). Previous studies have confirmed that gut microbiota in early life influences subsequent neurodevelopment. However, few studies have reported corresponding data in SGA populations.ObjectiveWe aimed to evaluate the characteristics of the gut microbiota of term SGA infants and the associations between the gut microbiota in SGA infants and neurodevelopmental outcomes at 6 months of age.MethodsFecal samples were collected on days 1, 3, 5, and 7 from term SGA and AGA infants born between June 2020 and June 2021 at the Peking University First Hospital. 16S ribosomal deoxyribonucleic acid amplicon sequencing was used to analyze the fecal microbiota. We followed up for 6 months and used the Ages and Stages Questionnaires-3 (ASQ-3) to evaluate the neurodevelopmental outcomes among SGA infants.ResultsA total of 162 neonates were enrolled, with 41 SGA infants (25.3%) in the study group and 121 AGA infants (74.7%) in the control group. The gut microbial diversity in the SGA group was lower than that in the AGA group on days 1, 3, 5, and 7. Non-metric multidimensional scaling and analysis of similarities showed significant differences between the two groups. The SGA group had increased relative abundances of Ralstonia (3, 5, and 7 days) and Clostridium (3 and 7 days). The dominant microorganisms of the SGA group were Ralstonia on day 1, Escherichia_Shigella on days 3 and 7, and Clostridia on day 5. We found that the gut microbial diversity of SGA infants with poor communication scores was higher than that of SGA infants with good communication scores on day 3. Fine motor scores were negatively correlated with the relative abundance of Bacteroides_fragilis on day 1. A negative correlation was observed between gross motor scores and relative abundance of Clostridium_saccharobutylicum on day 7. Bacteroidota, Bacteroidia, Bacteroides, and Bacteroides_fragilis were the dominant microorganisms in the good communication score group on day 7. Communication scores were positively correlated with the relative abundance of Bacteroidota, Bacteroides, and Bacteroides_fragilis on day 7.ConclusionThe gut microbial diversity of term SGA infants was significantly lower in the first week of life than that of term AGA infants. Certain pathogenic and conditional pathogenic bacteria, such as Escherichia_Shigella, Ralstonia and Clostridium increased or formed the dominant microbiota in SGA infants. Alpha diversity, Bacteroidota, Bacteroides, Bacteroides_fragilis, and Clostridium_saccharobutylicum found in SGA infants may be associated with neurodevelopmental outcomes at 6 months of age, indicating possible therapeutic targets for clinical intervention.
Case report: Ultrasound-guided multi-site electroacupuncture stimulation for a patient with spinal cord injury
Authors: Song Xi-Zi , Chu Xiao-Lei , Liu Tao , Cao Yu-Tong , Li Rui-Xin , Gao Ming-Wei , Li Qing-Wen , Gu Xiao-Song , Ming Dong 
Published: August 2022

IntroductionSpinal cord injury causes permanent neurological deficits, which have devastating physical, social, and vocational consequences for patients and their families. Traditional Chinese medicine uses acupuncture to treat neuropathic pain and improve nerve conduction velocity. This treatment can also reduce peripheral nerve injury joint contracture and muscle atrophy in affected patients. And it's got a remarkable restoration when electrical stimulation therapy on impaired peripheral nerves in animal models and clinical trials.Case descriptionA 48-year-old woman was hit by a heavy object that injured her lower back. The patient had a T12-L1 vertebral flexion and stretch fracture with traumatic spinal stenosis. The patient was transferred to the rehabilitation department after posterior T12-L2-segment pedicle screw system distraction and reduction, internal fixation, decompression, and bone graft fusion. Ultrasound-guided electroacupuncture was used to stimulate the sacral nerve, the spinal nerve, and the head of the patient, accompanied by spinal joint loosening training, respiratory training, lumbar comprehensive sports training, paraplegic limbs comprehensive training, and other manipulative treatment.OutcomesAfter the intervention, the patient showed significant improvements in sensory and motor scores, resulting in functional recovery according to ASIA and FIM. The patient gradually showed reasonable functional remission.DiscussionThe sacral nerve, the spinal cord, and the head were electrically stimulated by ultrasound-guided electroacupuncture in terms of intervention, and various functions of the patient were alleviated to a certain extent. The efficacy of ultrasound-guided electroacupuncture stimulation in treating neurologic symptoms should be validated in future clinical trials.
Examining virtual driving test performance and its relationship to individuals with HIV-associated neurocognitive disorders
Authors: Grethlein David , Pirrone Vanessa , Devlin Kathryn N. , Dampier Will , Szep Zsofia , Winston Flaura K. , Ontañón Santiago , Walshe Elizabeth A. , Malone Kim , Tillman Shinika , Ances Beau M. , Kandadai Venk , Kolson Dennis L. , Wigdahl Brian 
Published: August 2022

SignificanceExisting screening tools for HIV-associated neurocognitive disorders (HAND) are often clinically impractical for detecting milder forms of impairment. The formal diagnosis of HAND requires an assessment of both cognition and impairment in activities of daily living (ADL). To address the critical need for identifying patients who may have disability associated with HAND, we implemented a low-cost screening tool, the Virtual Driving Test (VDT) platform, in a vulnerable cohort of people with HIV (PWH). The VDT presents an opportunity to cost-effectively screen for milder forms of impairment while providing practical guidance for a cognitively demanding ADL.ObjectivesWe aimed to: (1) evaluate whether VDT performance variables were associated with a HAND diagnosis and if so; (2) systematically identify a manageable subset of variables for use in a future screening model for HAND. As a secondary objective, we examined the relative associations of identified variables with impairment within the individual domains used to diagnose HAND.MethodsIn a cross-sectional design, 62 PWH were recruited from an established HIV cohort and completed a comprehensive neuropsychological assessment (CNPA), followed by a self-directed VDT. Dichotomized diagnoses of HAND-specific impairment and impairment within each of the seven CNPA domains were ascertained. A systematic variable selection process was used to reduce the large amount of VDT data generated, to a smaller subset of VDT variables, estimated to be associated with HAND. In addition, we examined associations between the identified variables and impairment within each of the CNPA domains.ResultsMore than half of the participants (N = 35) had a confirmed presence of HAND. A subset of twenty VDT performance variables was isolated and then ranked by the strength of its estimated associations with HAND. In addition, several variables within the final subset had statistically significant associations with impairment in motor function, executive function, and attention and working memory, consistent with previous research.ConclusionWe identified a subset of VDT performance variables that are associated with HAND and assess relevant functional abilities among individuals with HAND. Additional research is required to develop and validate a predictive HAND screening model incorporating this subset.
Effectiveness of bimodal auditory and electrical stimulation in patients with tinnitus: A feasibility study
Authors: Spencer Shikha , Mielczarek Marzena , Olszewski Jurek , Sereda Magdalena , Joossen Iris , Vermeersch Hanne , Gilles Annick , Michiels Sarah 
Published: August 2022

BackgroundTinnitus is a common symptom, affecting about 10–15% of the adult population. When input from the somatosensory system can influence and/or elicit tinnitus, this type of subjective tinnitus is called somatosensory tinnitus. Recently, a new type of bimodal neurostimulation treatment has shown promising results for a specific subgroup within the somatosensory tinnitus population. It is, however, not clear if this bimodal stimulation is also effective in patients with other types of subjective tinnitus.AimThe aim of this study was to evaluate the feasibility and efficacy of non-invasive bimodal auditory-somatosensory stimulation in reducing tinnitus severity among a general population of people with subjective tinnitus.MethodsChronic subjective tinnitus patients were recruited from the ENT department of the Antwerp University Hospital. Somatosensory stimulation was delivered by Transcutaneous Electrical Nerve Stimulation (TENS), and it was combined with auditory stimulation via headphones. The therapy comprised six sessions of thirty minutes twice a week for a period of 3 consecutive weeks. Follow up measurements were scheduled 9–12 weeks after the last treatment session. The change of the Tinnitus Functional Index (TFI) score, a questionnaire evaluating tinnitus burden and effects on the quality of life, was the primary outcome measure.ResultsTwenty-nine patients were enrolled in the study. A linear mixed-effects model was used to analyze the efficacy of bimodal treatment. The results of this analysis showed a statistically significant decrease (by 6, 9 points) in average TFI score at the follow up visit when compared to baseline. The ability to modulate tinnitus did not have an influence on the treatment results.ConclusionOur study showed that bimodal stimulation is a feasible and safe method of tinnitus treatment. The method might be an effective treatment for some participants with tinnitus, especially those who have accompanying neck/temporomandibular problems, although, the evidence from this trial is quite weak. Additional research is needed toward establishing the optimal treatment protocol, as well as selecting the most appropriate inclusion criteria.
Validity of the peak velocity to detect physical training improvements in athymic mice
Authors: Kraemer Maurício Beitia , Silva Karen Christine , Kraemer Camila Cunha França , Pereira Juliana Silva , dos Reis Ivan Gustavo Masseli , Priolli Denise Gonçalves , Messias Leonardo Henrique Dalcheco 
Published: August 2022

This study comprises two complementary experiments with athymic Balb/c (Nu/Nu) mice. In experiment 1, the aim was to verify the reproducibility of the peak velocity (VPeak) determined from the incremental test. The second experiment aimed to assess the VPeak sensitivity to prescribe and detect modulations of the physical training in athymic nude mice. Sixteen mice were submitted to two incremental treadmill tests separated by 48-h (Experiment 1). The test consisted of an initial warm-up of 5 minutes. Subsequently, animals initiated the tests at 8 m min−1 with increments of 2 m min−1 every 3 minutes. The VPeak was determined as the highest velocity attained during the protocol. In experiment 2, these animals were randomly allocated to an exercise group (EG) or a control group (CG). The training protocol consisted of 30-min of treadmill running at 70% of the VPeak five times a week for 4 weeks. High indexes of reproducibility were obtained for VPeak (Test = 19.7 ± 3.6 m min−1; Retest = 19.2 ± 3.4 m min−1; p = 0.171; effect size = 0.142; r = 0.90). Animals from the EG had a significant increase of VPeak (Before = 18.4 ± 2.7 m min−1; After = 24.2 ± 6.0 m min−1; p = 0.023). Conversely, a significant decrease was observed for the CG (Before = 21.1 ± 3.9 m min−1; After = 15.9 ± 2.7 m min−1; p = 0.038). The VPeak is a valid parameter for exercise prescription in studies involving athymic nude mice.