bluuebunny/crossref_metadata_2025_split huggingface dataset:
GPX4-independent ferroptosis—a new strategy in disease’s therapy
Authors: Ma Tianyu , Du Jingtong , Zhang Yufeng , Wang Yuyao , Wang Bingxuan , Zhang Tianhong 
Published: October 2022

AbstractFerroptosis is a form of programmed cell death characterized by intracellular iron accumulation and lipid peroxidation, and earlier studies identified glutathione peroxidase 4 (GPX4) as an essential regulator of this process. Ferroptosis plays an essential role in tumors, degenerative diseases, and ischemia-reperfusion injury. However, researchers have found that inhibition of GPX4 does not entirely suppress ferroptosis in certain diseases, or cells express resistance to ferroptosis agonists that inhibit GPX4. As research progresses, it has been discovered that there are multiple regulatory pathways for ferroptosis that are independent of GPX4. The study of GPX4-independent ferroptosis pathways can better target ferroptosis to prevent and treat various diseases. Here, the currently inhibited pulmonary GPX4-dependent ferroptosis pathways will be reviewed.
Sexually dimorphic estrogen sensing in skeletal stem cells controls skeletal regeneration
Authors: Andrew Tom W. , Koepke Lauren S. , Wang Yuting , Lopez Michael , Steininger Holly , Struck Danielle , Boyko Tatiana , Ambrosi Thomas H. , Tong Xinming , Sun Yuxi , Gulati Gunsagar S. , Murphy Matthew P. , Marecic Owen , Tevlin Ruth , Schallmoser Katharina , Strunk Dirk , Seita Jun , Goodman Stuart B. , Yang Fan , Longaker Michael T. , Yang George P. , Chan Charles K. F. 
Published: October 2022

AbstractSexually dimorphic tissues are formed by cells that are regulated by sex hormones. While a number of systemic hormones and transcription factors are known to regulate proliferation and differentiation of osteoblasts and osteoclasts, the mechanisms that determine sexually dimorphic differences in bone regeneration are unclear. To explore how sex hormones regulate bone regeneration, we compared bone fracture repair between adult male and female mice. We found that skeletal stem cell (SSC) mediated regeneration in female mice is dependent on estrogen signaling but SSCs from male mice do not exhibit similar estrogen responsiveness. Mechanistically, we found that estrogen acts directly on the SSC lineage in mice and humans by up-regulating multiple skeletogenic pathways and is necessary for the stem cell’s ability to self- renew and differentiate. Our results also suggest a clinically applicable strategy to accelerate bone healing using localized estrogen hormone therapy.
Sensitivity and spectral control of network lasers
Authors: Saxena Dhruv , Arnaudon Alexis , Cipolato Oscar , Gaio Michele , Quentel Alain , Yaliraki Sophia , Pisignano Dario , Camposeo Andrea , Barahona Mauricio , Sapienza Riccardo 
Published: October 2022

AbstractRecently, random lasing in complex networks has shown efficient lasing over more than 50 localised modes, promoted by multiple scattering over the underlying graph. If controlled, these network lasers can lead to fast-switching multifunctional light sources with synthesised spectrum. Here, we observe both in experiment and theory high sensitivity of the network laser spectrum to the spatial shape of the pump profile, with some modes for example increasing in intensity by 280% when switching off 7% of the pump beam. We solve the nonlinear equations within the steady state ab-initio laser theory (SALT) approximation over a graph and we show selective lasing of around 90% of the strongest intensity modes, effectively programming the spectrum of the lasing networks. In our experiments with polymer networks, this high sensitivity enables control of the lasing spectrum through non-uniform pump patterns. We propose the underlying complexity of the network modes as the key element behind efficient spectral control opening the way for the development of optical devices with wide impact for on-chip photonics for communication, sensing, and computation.
The occurrence of ansamers in the synthesis of cyclic peptides
Authors: Yao Guiyang , Kosol Simone , Wenz Marius T. , Irran Elisabeth , Keller Bettina G. , Trapp Oliver , Süssmuth Roderich D. 
Published: October 2022

Abstractα-Amanitin is a bicyclic octapeptide composed of a macrolactam with a tryptathionine cross-link forming a handle. Previously, the occurrence of isomers of amanitin, termed atropisomers has been postulated. Although the total synthesis of α-amanitin has been accomplished this aspect still remains unsolved. We perform the synthesis of amanitin analogs, accompanied by in-depth spectroscopic, crystallographic and molecular dynamics studies. The data unambiguously confirms the synthesis of two amatoxin-type isomers, for which we propose the term ansamers. The natural structure of the P-ansamer can be ansa-selectively synthesized using an optimized synthetic strategy. We believe that the here described terminology does also have implications for many other peptide structures, e.g. norbornapeptides, lasso peptides, tryptorubins and others, and helps to unambiguously describe conformational isomerism of cyclic peptides.
Higher harmonics in planar Hall effect induced by cluster magnetic multipoles
Authors: Song Jeongkeun , Oh Taekoo , Ko Eun Kyo , Lee Ji Hye , Kim Woo Jin , Zhu Yangyu , Yang Bohm-Jung , Li Yangyang , Noh Tae Won 
Published: October 2022

AbstractAntiferromagnetic (AFM) materials are attracting tremendous attention due to their spintronic applications and associated novel topological phenomena. However, detecting and identifying the spin configurations in AFM materials are quite challenging due to the absence of net magnetization. Herein, we report the practicality of utilizing the planar Hall effect (PHE) to detect and distinguish “cluster magnetic multipoles” in AFM Nd2Ir2O7 (NIO-227) fully strained films. By imposing compressive strain on the spin structure of NIO-227, we artificially induced cluster magnetic multipoles, namely dipoles and A2- and T1-octupoles. Importantly, under magnetic field rotation, each magnetic multipole exhibits distinctive harmonics of the PHE oscillation. Moreover, the planar Hall conductivity has a nonlinear magnetic field dependence, which can be attributed to the magnetic response of the cluster magnetic octupoles. Our work provides a strategy for identifying cluster magnetic multipoles in AFM systems and would promote octupole-based AFM spintronics.
The extent to which soil hydraulics can explain ecohydrological separation
Authors: Finkenbiner Catherine E. , Good Stephen P. , Renée Brooks J. , Allen Scott T. , Sasidharan Salini 
Published: October 2022

AbstractField measurements of hydrologic tracers indicate varying magnitudes of geochemical separation between subsurface pore waters. The potential for conventional soil physics alone to explain isotopic differences between preferential flow and tightly-bound water remains unclear. Here, we explore physical drivers of isotopic separations using 650 different model configurations of soil, climate, and mobile/immobile soil-water domain characteristics, without confounding fractionation or plant uptake effects. We find simulations with coarser soils and less precipitation led to reduced separation between pore spaces and drainage. Amplified separations are found with larger immobile domains and, to a lesser extent, higher mobile-immobile transfer rates. Nonetheless, isotopic separations remained small (<4‰ for δ2H) across simulations, indicating that contrasting transport dynamics generate limited geochemical differences. Therefore, conventional soil physics alone are unlikely to explain large ecohydrological separations observed elsewhere, and further efforts aimed at reducing methodological artifacts, refining understanding of fractionation processes, and investigating new physiochemical mechanisms are needed.
De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution
Authors: Liao Jie , Qian Jingyang , Fang Yin , Chen Zhuo , Zhuang Xiang , Zhang Ningyu , Shao Xin , Hu Yining , Yang Penghui , Cheng Junyun , Hu Yang , Yu Lingqi , Yang Haihong , Zhang Jinlu , Lu Xiaoyan , Shao Li , Wu Dan , Gao Yue , Chen Huajun , Fan Xiaohui 
Published: October 2022

AbstractUncovering the tissue molecular architecture at single-cell resolution could help better understand organisms’ biological and pathological processes. However, bulk RNA-seq can only measure gene expression in cell mixtures, without revealing the transcriptional heterogeneity and spatial patterns of single cells. Herein, we introduce Bulk2Space (https://github.com/ZJUFanLab/bulk2space), a deep learning framework-based spatial deconvolution algorithm that can simultaneously disclose the spatial and cellular heterogeneity of bulk RNA-seq data using existing single-cell and spatial transcriptomics references. The use of bulk transcriptomics to validate Bulk2Space unveils, in particular, the spatial variance of immune cells in different tumor regions, the molecular and spatial heterogeneity of tissues during inflammation-induced tumorigenesis, and spatial patterns of novel genes in different cell types. Moreover, Bulk2Space is utilized to perform spatial deconvolution analysis on bulk transcriptome data from two different mouse brain regions derived from our in-house developed sequencing approach termed Spatial-seq. We have not only reconstructed the hierarchical structure of the mouse isocortex but also further annotated cell types that were not identified by original methods in the mouse hypothalamus.
Photodimerization induced hierarchical and asymmetric iontronic micropatterns
Authors: Wang Zehong , Li Tiantian , Chen Yixiang , Li Jin , Ma Xiaodong , Yin Jie , Jiang Xuesong 
Published: October 2022

AbstractMicropatterning various ion-based modality materials offers compelling advantages for functionality enhancement in iontronic pressure sensing, piezoionic mechanoreception, and skin-interfaced electrode adhesion. However, most existing patterning techniques for iontronic materials suffer from low flexibility and limited modulation capability. Herein, we propose a facile and robust method to fabricate hierarchical and asymmetrical iontronic micropatterns (denoted as HAIMs) through programmed regulation of the internal stress distribution and the local ionic migration among an iontronic host. The resultant HAIMs with arbitrarily regulated morphologies and region-dependent ionic electrical performance can be readily made via localized photodimerization of an anthracene-functionalized ionic liquid copolymer (denoted as An-PIL) and subsequent vapor oxidative polymerization of 3,4-ethylenedioxythiophene (EDOT). Based on the piezoionic effect within the resultant distinct doped PEDOT, HAIMs can serve as a scalable iontronic potential generator. Successful syntheses of these fascinating micropatterns may accelerate the development of patterned iontronic materials in a flexible, programmable, and functionally adaptive form.
Development of long lifespan high-energy aqueous organic||iodine rechargeable batteries
Authors: Zhang Zishuai , Zhu Yilong , Yu Miao , Jiao Yan , Huang Yan 
Published: October 2022

AbstractRechargeable aqueous metal||I2electrochemical energy storage systems are a cost-effective alternative to conventional transition-metal-based batteries for grid energy storage. However, the growth of unfavorable metallic deposition and the irreversible formation of electrochemically inactive by-products at the negative electrode during cycling hinder their development. To circumvent these drawbacks, herein we propose 3,4,9,10-perylenetetracarboxylic diimide (PTCDI) as negative electrode active material and a saturated mixed KCl/I2aqueous electrolyte solution. The use of these components allows for exploiting two sequential reversible electrochemical reactions in a single cell. Indeed, when they are tested in combination with an active carbon-enveloped I2electrode in a glass cell configuration, we report an initial specific discharge capacity of 900 mAh g−1(electrode mass of iodine only) and an average cell discharge voltage of 1.25 V at 40 A g−1and 25$$\pm$$±1 °C. Finally, we also report the assembly and testing of a PTCDI|KCl-I2|carbon paper multilayer pouch cell prototype with a discharge capacity retention of about 70% after 900 cycles at 80 mA and 25$$\pm$$±1 °C.
Topological polarization singular lasing with highly efficient radiation channel
Authors: Sang Yun-Gang , Lu Jing-Yu , Ouyang Yun-Hao , Luan Hong-Yi , Wu Jia-Hao , Li Jia-Yong , Ma Ren-Min 
Published: October 2022

AbstractBound states in the continuum (BICs) in photonic crystals describe the originally leaky Bloch modes that can become bounded when their radiation fields carry topological polarization singularities. However, topological polarization singularities do not carry energy to far field, which limits radiation efficiencies of BICs for light emitting applications. Here, we demonstrate a topological polarization singular laser which has a topological polarization singular channel in the second Brillouin zone and a paired linearly polarized radiation channel in the first Brillouin zone. The presence of the singular channel enables the lasing mode with a higher quality factor than other modes for single mode lasing. In the meanwhile, the presence of the radiation channel secures the lasing mode with high radiation efficiency. The demonstrated topological polarization singular laser operates at room temperature with an external quantum efficiency exceeding 24%. Our work presents a new paradigm in eigenmode engineering for mode selection, exotic field manipulation and lasing.
Recent progress in solution-processed flexible organic photovoltaics
Authors: Sun Lulu , Fukuda Kenjiro , Someya Takao 
Published: October 2022

AbstractThe certified power conversion efficiency (PCE) of organic photovoltaics (OPV) fabricated in laboratories has improved dramatically to over 19% owing to the rapid development of narrow-bandgap small-molecule acceptors and wide bandgap polymer donor materials. The next pivotal question is how to translate small-area laboratory devices into large-scale commercial applications. This requires the OPV to be solution-processed and flexible to satisfy the requirements of high-throughput and large-scale production such as roll-to-roll printing. This review summarizes and analyzes recent progress in solution-processed flexible OPV. After a detailed discussion from the perspective of the behavior of the narrow bandgap small-molecule acceptor and wide bandgap polymer donor active layer in solution-processed flexible devices, the existing challenges and future directions are discussed.
A comparison study of crevice corrosion on typical stainless steels under biofouling and artificial configurations
Authors: Zhang Zhan , Li Zongxin , Wu Fei , Xia Jiuyang , Huang Kang , Zhang Bowei , Wu Junsheng 
Published: October 2022

AbstractIn this work, the crevice corrosion behavior and biofouling coverage of 316L stainless steel (316L SS), 2205 duplex stainless steel (2205 DSS), and 2507 super duplex stainless steel (2507 SDSS) in natural seawater were investigated through long-term field exposure tests. The results revealed that both artificial crevice corrosion and biofouling-induced crevice corrosion occurred on the surface of three stainless steels. The corrosion rate was ranked as 316L SS » 2205 DSS＞2507 SDSS. The deepest area of the artificial corrosion pit was at the edge of the crevice, which was related to the IR drop and acidification of the localized solution. The highest biofouling coverage and the most severe biofouling-induced corrosion occurred on the surface of 316L SS. The attachment of large organisms to the metal surface formed a fouling barrier layer, further blocking the flow of material over the crevices, and the artificial crevice corrosion was accelerated. The initiation of barnacle-induced corrosion was due to the formation of a crevice between the barnacle and the substrate, resulting in the entry of seawater. The acidification of the solution caused by catalytic-occluded cells was responsible for the continuous development of barnacle-induced corrosion, which was similar to the propagation of the artificial crevice corrosion.
Sustainable and green polylactic acid-based membrane embedded with self-assembled positively charged f-MWCNTs/GO nanohybrids for the removal of nutrients from wastewater
Authors: Nassar Lobna , Wadi Vijay S. , Hegab Hanaa M. , Khalil Hiyam , Banat Fawzi , Naddeo Vincenzo , Hasan Shadi W. 
Published: October 2022

AbstractIn this study, the synthesis, and chemical-physical characterization of self-assembled positively charged multi-walled carbon nanotubes/graphene oxide (f-MWCNTs)/(GO)-nanohybrids into adsorptive PLA-based membranes were investigated. The application of the innovative PLA/f-MWCNTs/GO membrane was investigated for the removal of nutrients such as nitrogen (N) and phosphorus (P) from both synthetic and real wastewater by performing various characterization and performance tests. The positively charged nanohybrid was prepared by electrostatic self-assembly of positively charged f-MWCNTs and negatively charged GO. The amount of nanohybrid loading in the nanocomposite membranes varied from 0 to 6 wt%, and its effects on nutrient removal and water flux were investigated. It is demonstrated that with the addition of only 1.5 wt% f-MWCNT/GO nanohybrid into the PLA matrix, the water flux increased by 74% when compared to the unmodified membrane. Also, up to 90.1 ± 3.4% and 71.3 ± 3.1% removal rates of ammonium-nitrogen (NH4+-N) and phosphate (PO43−-P) ions were achieved using raw wastewater, respectively. The obtained results confirm the practical usability of the proposed innovative material for membrane fabrication in real wastewater treatment applications and can open doors to efficient and sustainable methods for nutrient removal.
Multiscale imaging on Saxifraga paniculata provides new insights into yttrium uptake by plants
Authors: Fehlauer Till , Collin Blanche , Angeletti Bernard , Negahi Mohammad Mustafa , Dentant Cédric , Chaurand Perrine , Lallemand Claire , Levard Clement , Rose Jérôme 
Published: October 2022

AbstractYttrium (Y) has gained importance in high tech applications and, together with the other rare earth elements (REEs), is also considered to be an emerging environmental pollutant. The alpine plant Saxifraga paniculata was previously shown to display high metal tolerance and an intriguing REE accumulation potential. In this study, we analysed soil grown commercial and wild specimens of Saxifraga paniculata to assess Y accumulation and shed light on the uptake pathway. Laser ablation inductively coupled plasma mass spectrometry and synchrotron-based micro X-ray fluorescence spectroscopy was used to localise Y within the plant tissues and identify colocalized elements. Y was distributed similarly in commercial and wild specimens. Within the roots, Y was mostly located in the epidermis region. Translocation was low, but wild individuals accumulated significantly more Y than commercial ones. In plants of both origins, we observed consistent colocalization of Al, Fe, Y and Ce in all plant parts except for the hydathodes. This indicates a shared pathway during translocation and could explained by the formation of a stable organic complex with citrate, for example. Our study provides important insights into the uptake pathway of Y in S. paniculata, which can be generalised to other plants.
Structure of the human heterodimeric transporter 4F2hc-LAT2 in complex with Anticalin, an alternative binding protein for applications in single-particle cryo-EM
Authors: Jeckelmann Jean-Marc , Lemmin Thomas , Schlapschy Martin , Skerra Arne , Fotiadis Dimitrios 
Published: October 2022

AbstractCryo-EM structure determination of relatively small and flexible membrane proteins at high resolution is challenging. Increasing the size and structural features by binding of high affinity proteins to the biomolecular target allows for better particle alignment and may result in structural models of higher resolution and quality. Anticalins are alternative binding proteins to antibodies, which are based on the lipocalin scaffold and show potential for theranostic applications. The human heterodimeric amino acid transporter 4F2hc-LAT2 is a membrane protein complex that mediates transport of certain amino acids and derivatives thereof across the plasma membrane. Here, we present and discuss the cryo-EM structure of human 4F2hc-LAT2 in complex with the anticalin D11vs at 3.2 Å resolution. Relative high local map resolution (2.8–3.0 Å) in the LAT2 substrate binding site together with molecular dynamics simulations indicated the presence of fixed water molecules potentially involved in shaping and stabilizing this region. Finally, the presented work expands the application portfolio of anticalins and widens the toolset of binding proteins to promote high-resolution structure solution by single-particle cryo-EM.
Origin, structure and functional transition of sex pheromone components in a false widow spider
Authors: Fischer Andreas , Gries Regine , Alamsetti Santosh K. , Hung Emmanuel , Roman Torres Andrea C. , Fernando Yasasi , Meraj Sanam , Ren Weiwu , Britton Robert , Gries Gerhard 
Published: October 2022

AbstractFemale web-building spiders disseminate pheromone from their webs that attracts mate-seeking males and deposit contact pheromone on their webs that induces courtship by males upon arrival. The source of contact and mate attractant pheromone components, and the potential ability of females to adjust their web’s attractiveness, have remained elusive. Here, we report three new contact pheromone components produced by female false black widow spiders, Steatoda grossa: N-4-methylvaleroyl-O-butyroyl-L-serine, N-4-methylvaleroyl-O-isobutyroyl-L-serine and N-4-methylvaleroyl-O-hexanoyl-L-serine. The compounds originate from the posterior aggregate silk gland, induce courtship by males, and web pH-dependently hydrolyse at the carboxylic-ester bond, giving rise to three corresponding carboxylic acids that attract males. A carboxyl ester hydrolase (CEH) is present on webs and likely mediates the functional transition of contact sex pheromone components to the carboxylic acid mate attractant pheromone components. As CEH activity is pH-dependent, and female spiders can manipulate their silk’s pH, they might also actively adjust their webs’ attractiveness.
Tracking matricellular protein SPARC in extracellular vesicles as a non-destructive method to evaluate lipid-based antifibrotic treatments
Authors: Zivko Cristina , Fuhrmann Kathrin , Fuhrmann Gregor , Luciani Paola 
Published: October 2022

AbstractUncovering the complex cellular mechanisms underlying hepatic fibrogenesis could expedite the development of effective treatments and noninvasive diagnosis for liver fibrosis. The biochemical complexity of extracellular vesicles (EVs) and their role in intercellular communication make them an attractive tool to look for biomarkers as potential alternative to liver biopsies. We developed a solid set of methods to isolate and characterize EVs from differently treated human hepatic stellate cell (HSC) line LX-2, and we investigated their biological effect onto naïve LX-2, proving that EVs do play an active role in fibrogenesis. We mined our proteomic data for EV-associated proteins whose expression correlated with HSC treatment, choosing the matricellular protein SPARC as proof-of-concept for the feasibility of fluorescence nanoparticle-tracking analysis to determine an EV-based HSCs’ fibrogenic phenotype. We thus used EVs to directly evaluate the efficacy of treatment with S80, a polyenylphosphatidylcholines-rich lipid, finding that S80 reduces the relative presence of SPARC-positive EVs. Here we correlated the cellular response to lipid-based antifibrotic treatment to the relative presence of a candidate protein marker associated with the released EVs. Along with providing insights into polyenylphosphatidylcholines treatments, our findings pave the way for precise and less invasive diagnostic analyses of hepatic fibrogenesis.