bluuebunny/crossref_metadata_2025_split huggingface dataset:
Gender gap in deep brain stimulation for Parkinson’s disease
Authors: Jost Stefanie T. , Strobel Lena , Rizos Alexandra , Loehrer Philipp A. , Ashkan Keyoumars , Evans Julian , Rosenkranz Franz , Barbe Michael T. , Fink Gereon R. , Franklin Jeremy , Sauerbier Anna , Nimsky Christopher , Sattari Afsar , Ray Chaudhuri K. , Antonini Angelo , Timmermann Lars , Martinez-Martin Pablo , Silverdale Monty , Kalbe Elke , Visser-Vandewalle Veerle , Dafsari Haidar S. ,   EUROPAR and the International Parkinson and Movement Disorders Society Non-Motor Parkinson’s Disease Study Group
Published: April 2022

AbstractPrevious studies have shown less access to deep brain stimulation (DBS) for Parkinson’s disease (PD) in women compared to men raising concerns about a potential gender gap resulting from nonclinical factors or gender differences in clinical efficacy for postoperative quality of life (QoL), motor, and nonmotor symptoms (NMS) outcomes. This was a cross-sectional and a longitudinal, prospective, observational, controlled, quasi-experimental, international multicenter study. A total sample size of 505 consisted of 316 consecutively referred patients for DBS indication evaluation at the University Hospital Cologne (01/2015–09/2020) and 189 consecutively treated patients at DBS centers in the University Hospitals Cologne and Marburg, Salford’s Royal Hospital Manchester, and King’s College Hospital London. In the cross-sectional cohort, we examined gender proportions at referral, indication evaluations, and DBS surgery. In the longitudinal cohort, clinical assessments at preoperative baseline and 6-month follow-up after surgery included the PD Questionnaire-8, NMSScale, Scales for Outcomes in PD-motor scale, and levodopa-equivalent daily dose. Propensity score matching resulted in a pseudo-randomized sub-cohort balancing baseline demographic and clinical characteristics between women with PD and male controls. 316 patients were referred for DBS. 219 indication evaluations were positive (women n = 102, respectively n = 82). Women with PD were disproportionally underrepresented in referrals compared to the general PD population (relative risk [RR], 0.72; 95%CI, 0.56–0.91; P = 0.002), but more likely to be approved for DBS than men (RR, 1.17; 95%CI, 1.03–1.34; P = 0.029). Nonetheless, their total relative risk of undergoing DBS treatment was 0.74 (95%CI, 0.48–1.12) compared to men with PD. At baseline, women had longer disease duration and worse dyskinesia. Exploring QoL domains, women reported worse mobility and bodily discomfort. At follow-up, all main outcomes improved equally in both genders. Our study provides evidence of a gender gap in DBS for PD. Women and men with PD have distinct preoperative nonmotor and motor profiles. We advocate that more focus should be directed toward the implementation of gender equity as both genders benefit from DBS with equal clinical efficacy. This study provides Class II evidence of beneficial effects of DBS in women with PD compared to male controls.
A quantum processor based on coherent transport of entangled atom arrays
Authors: Bluvstein Dolev , Levine Harry , Semeghini Giulia , Wang Tout T. , Ebadi Sepehr , Kalinowski Marcin , Keesling Alexander , Maskara Nishad , Pichler Hannes , Greiner Markus , Vuletić Vladan , Lukin Mikhail D. 
Published: April 2022

AbstractThe ability to engineer parallel, programmable operations between desired qubits within a quantum processor is key for building scalable quantum information systems1,2. In most state-of-the-art approaches, qubits interact locally, constrained by the connectivity associated with their fixed spatial layout. Here we demonstrate a quantum processor with dynamic, non-local connectivity, in which entangled qubits are coherently transported in a highly parallel manner across two spatial dimensions, between layers of single- and two-qubit operations. Our approach makes use of neutral atom arrays trapped and transported by optical tweezers; hyperfine states are used for robust quantum information storage, and excitation into Rydberg states is used for entanglement generation3–5. We use this architecture to realize programmable generation of entangled graph states, such as cluster states and a seven-qubit Steane code state6,7. Furthermore, we shuttle entangled ancilla arrays to realize a surface code state with thirteen data and six ancillary qubits8and a toric code state on a torus with sixteen data and eight ancillary qubits9. Finally, we use this architecture to realize a hybrid analogue–digital evolution2and use it for measuring entanglement entropy in quantum simulations10–12, experimentally observing non-monotonic entanglement dynamics associated with quantum many-body scars13,14. Realizing a long-standing goal, these results provide a route towards scalable quantum processing and enable applications ranging from simulation to metrology.
Pterosaur melanosomes support signalling functions for early feathers
Authors: Cincotta Aude , Nicolaï Michaël , Campos Hebert Bruno Nascimento , McNamara Maria , D’Alba Liliana , Shawkey Matthew D. , Kischlat Edio-Ernst , Yans Johan , Carleer Robert , Escuillié François , Godefroit Pascal 
Published: April 2022

AbstractRemarkably well-preserved soft tissues in Mesozoic fossils have yielded substantial insights into the evolution of feathers1. New evidence of branched feathers in pterosaurs suggests that feathers originated in the avemetatarsalian ancestor of pterosaurs and dinosaurs in the Early Triassic2, but the homology of these pterosaur structures with feathers is controversial3,4. Reports of pterosaur feathers with homogeneous ovoid melanosome geometries2,5suggest that they exhibited limited variation in colour, supporting hypotheses that early feathers functioned primarily in thermoregulation6. Here we report the presence of diverse melanosome geometries in the skin and simple and branched feathers of a tapejarid pterosaur from the Early Cretaceous found in Brazil. The melanosomes form distinct populations in different feather types and the skin, a feature previously known only in theropod dinosaurs, including birds. These tissue-specific melanosome geometries in pterosaurs indicate that manipulation of feather colour—and thus functions of feathers in visual communication—has deep evolutionary origins. These features show that genetic regulation of melanosome chemistry and shape7–9was active early in feather evolution.
Smart pooling: AI-powered COVID-19 informative group testing
Authors: Escobar María , Jeanneret Guillaume , Bravo-Sánchez Laura , Castillo Angela , Gómez Catalina , Valderrama Diego , Roa Mafe , Martínez Julián , Madrid-Wolff Jorge , Cepeda Martha , Guevara-Suarez Marcela , Sarmiento Olga L. , Medaglia Andrés L. , Forero-Shelton Manu , Velasco Mauricio , Pedraza Juan M. , Laajaj Rachid , Restrepo Silvia , Arbelaez Pablo 
Published: April 2022

AbstractMassive molecular testing for COVID-19 has been pointed out as fundamental to moderate the spread of the pandemic. Pooling methods can enhance testing efficiency, but they are viable only at low incidences of the disease. We propose Smart Pooling, a machine learning method that uses clinical and sociodemographic data from patients to increase the efficiency of informed Dorfman testing for COVID-19 by arranging samples into all-negative pools. To do this, we ran an automated method to train numerous machine learning models on a retrospective dataset from more than 8000 patients tested for SARS-CoV-2 from April to July 2020 in Bogotá, Colombia. We estimated the efficiency gains of using the predictor to support Dorfman testing by simulating the outcome of tests. We also computed the attainable efficiency gains of non-adaptive pooling schemes mathematically. Moreover, we measured the false-negative error rates in detecting the ORF1ab and N genes of the virus in RT-qPCR dilutions. Finally, we presented the efficiency gains of using our proposed pooling scheme on proof-of-concept pooled tests. We believe Smart Pooling will be efficient for optimizing massive testing of SARS-CoV-2.
Acoustic discrimination in the grey bamboo shark Chiloscyllium griseum
Authors: Poppelier Tamar , Bonsberger Jana , Berkhout Boris Woody , Pollmanns Reneé , Schluessel Vera 
Published: April 2022

AbstractCognitive abilities of sharks are well developed and comparable to teleosts and other vertebrates. Most studies exploring elasmobranch cognitive abilities have used visual stimuli, assessing a wide range of discrimination tasks, memory retention and spatial learning abilities. Some studies using acoustic stimuli in a cognitive context have been conducted, but a basic understanding of sound induced behavioural changes and the underlying mechanisms involved are still lacking. This study explored the acoustic discrimination abilities of seven juvenile grey bamboo sharks (Chiloscyllium griseum) using a Go/No-Go method, which so far had never been tested in sharks before. After this, the smallest frequency difference leading to a change in behaviour in the sharks was studied using a series of transfer tests. Our results show that grey bamboo sharks can learn a Go/No-Go task using both visual and acoustic stimuli. Transfer tests elucidated that, when both stimulus types were presented, both were used. Within the tested range of 90–210 Hz, a frequency difference of 20–30 Hz is sufficient to discriminate the two sounds, which is comparable to results previously collected for sharks and teleosts. Currently, there is still a substantial lack of knowledge concerning the acoustic abilities and sound induced behaviours of sharks while anthropogenic noise is constantly on the rise. New insights into shark sound recognition, detection and use are therefore of the utmost importance and will aid in management and conservation efforts of sharks.
Scavenging of nitric oxide up-regulates photosynthesis under drought in Festuca arundinacea and F. glaucescens but reduces their drought tolerance
Authors: Perlikowski Dawid , Lechowicz Katarzyna , Pawłowicz Izabela , Arasimowicz-Jelonek Magdalena , Kosmala Arkadiusz 
Published: April 2022

AbstractNitric oxide (NO) has been proven to be involved in the regulation of many physiological processes in plants. Though the contribution of NO in plant response to drought has been demonstrated in numerous studies, this phenomenon remains still not fully recognized. The research presented here was performed to decipher the role of NO metabolism in drought tolerance and the ability to recover after stress cessation in two closely related species of forage grasses, important for agriculture in European temperate regions: Festuca arundinacea and F. glaucescens. In both species, two genotypes with distinct levels of drought tolerance were selected to compare their physiological reactions to simulated water deficit and further re-watering, combined with a simultaneous application of NO scavenger, 2-phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (PTIO). The results clearly indicated a strong relationship between scavenging of NO in leaves and physiological response of both analyzed grass species to water deficit and re-watering. It was revealed that NO generated under drought was mainly located in mesophyll cells. In plants with reduced NO level a higher photosynthetic capacity and delay in stomatal closure under drought, were observed. Moreover, NO scavenging resulted also in the increased membrane permeability and higher accumulation of ROS in cells of analyzed plants both under drought and re-watering. This phenomena indicate that lower NO level might reduce drought tolerance and the ability of F. arundinacea and F. glaucescens to recover after stress cessation.
Organocatalyst treatment improves variant calling and mutant detection in archival clinical samples
Authors: Wehmas Leah C. , Wood Charles E. , Guan Ping , Gosink Mark , Hester Susan D. 
Published: April 2022

AbstractFormalin fixation of biological specimens damages nucleic acids and limits their use in genomic analyses. Previously, we showed that RNA isolation with an organocatalyst (2-amino-5-methylphenyl phosphonic acid, used to speed up reversal of formalin-induced adducts) and extended heated incubation (ORGΔ) improved RNA-sequencing data from formalin-fixed paraffin-embedded (FFPE) tissue samples. The primary goal of this study was to evaluate whether ORGΔ treatment improves DNA-sequencing data from clinical FFPE samples. We isolated RNA and DNA ± ORGΔ from paired FFPE and frozen human renal and ovarian carcinoma specimens collected as part of the National Cancer Institute Biospecimen Pre-analytical Variables program. Tumor types were microscopically confirmed from adjacent tissue sections. Following extraction, DNA was fragmented and sequenced and differences were compared between frozen and FFPE sample pairs. Treatment with ORGΔ improved concurrent SNP calls in FFPE DNA compared to non-ORGΔ FFPE samples and enhanced confidence in SNP calls for all FFPE DNA samples, beyond that of matched frozen samples. In general, the concordant SNPs identified in paired frozen and FFPE DNA samples agreed for both genotype and homozygosity vs. heterozygosity of calls regardless of ORGΔ treatment. The increased confidence in ORGΔ FFPE DNA variant calls relative to the matched frozen DNA suggests a novel application of this method. With further optimization, this method may improve quality of DNA-sequencing data in FFPE as well as frozen tissue samples.
Home range size and habitat quality affect breeding success but not parental investment in barn owl males
Authors: Séchaud Robin , Schalcher Kim , Almasi Bettina , Bühler Roman , Safi Kamran , Romano Andrea , Roulin Alexandre 
Published: April 2022

AbstractLife-history theory predicts that parents should balance their limited resources to maximize lifetime fitness, limiting their investment in current reproduction when the fitness value of current progeny is lower than that gained by producing offspring in the future. Here, we examined whether male barn owls (Tyto alba) breeding in low-quality habitats increased their parental effort to successfully complete offspring rearing or limited their investment by paying a fitness cost while saving energy for the future. We equipped 128 males with GPS devices between 2016 and 2020 to collect information on home range size, habitat composition, food provisioning rate to the brood and nightly distances covered. We also recorded nestlings’ growth and survival, as well as males’ body mass variation and future reproductive success. Males living in lower-quality habitats exploited bigger home ranges compared to individuals whose nests were settled in prey-rich habitats. They fed their brood less frequently, while covering longer nightly distance, resulting in a slower growth of late-hatched nestlings and ultimately in a lower fledging success. As males did not differ in body mass variation or future reproductive success our findings suggest that males hunting in home ranges with less prey-rich structures do not jeopardize future reproduction by investing disproportionately larger resources to compensate for their current low home range quality.
Numerical mesoscale tissue model of electrochemotherapy in liver based on histological findings
Authors: Cindric Helena , Gasljevic Gorana , Edhemovic Ibrahim , Brecelj Erik , Zmuc Jan , Cemazar Maja , Seliskar Alenka , Miklavcic Damijan , Kos Bor 
Published: April 2022

AbstractElectrochemotherapy (ECT) and irreversible electroporation (IRE) are being investigated for treatment of hepatic tumours. The liver is a highly heterogeneous organ, permeated with a network of macro- and microvasculature, biliary tracts and connective tissue. The success of ECT and IRE depends on sufficient electric field established in whole target tissue; therefore, tissue heterogeneity may affect the treatment outcome. In this study, we investigate electroporation in the liver using a numerical mesoscale tissue model. We numerically reconstructed four ECT experiments in healthy porcine liver and computed the electric field distribution using our treatment planning framework. We compared the computed results with histopathological changes identified on microscopic images after treatment. The mean electric field threshold that best fitted the zone of coagulation necrosis was 1225 V/cm, while the mean threshold that best fitted the zone of partially damaged liver parenchyma attributed to IRE was 805 V/cm. We evaluated how the liver macro- and microstructures affect the electric field distribution. Our results show that the liver microstructure does not significantly affect the electric field distribution on the level needed for treatment planning. However, major hepatic vessels and portal spaces significantly affect the electric field distribution, and should be considered when planning treatments.
Amygdalin potentiates the anti-cancer effect of Sorafenib on Ehrlich ascites carcinoma and ameliorates the associated liver damage
Authors: Attia Attia Ahmed , Salama Afrah Fatthi , Eldiasty Jayda G. , Mosallam Sahar Abd El-Razik , El-Naggar Sabry Ali , El-Magd Mohammed Abu , Nasser Hebatala M. , Elmetwalli Alaa 
Published: April 2022

AbstractThe burden of cancer diseases is increasing every year, therefore, the demands to figure out novel drugs that can retain antitumor properties have been raised. This study aimed to investigate the anti-tumor properties of amygdalin (Amy) against Ehrlich ascites carcinoma (EAC) bearing mice and its protective properties against liver damage. Amy and the standard anticancer drug Sorafenib (Sor) were given alone or in combination to Swiss albino female mice that had been injected with EAC cells. Biochemical parameters of liver function (AST, ALT, GGT, total protein, albumin), tumor volume, oxidative stress [malondialdehyde, (MDA)] and antioxidative [superoxide dismutase (SOD), and reduced glutathione (GSH)] markers were measured. The hepatic expression of the antioxidant-related gene [nuclear factor erythroid-2-related factor 2 (Nrf2)], the migration-related gene [matrix metalloprotease 9 (MMP9)], and the angiogenesis-related gene [vascular endothelial growth factor (VEGF)] were evaluated by qPCR. The results revealed that EAC-bearing mice treated with Amy and/or Sor showed a decrease in the tumor burden and hepatic damage as evidenced by (1) decreased tumor volume, number of viable tumor cells; (2) increased number of dead tumor cells; (3) restored the liver function parameters; (4) reduced hepatic MDA levels; (5) enhanced hepatic GSH and SOD levels; (6) upregulated expression of Nrf2; (7) downregulated expression of MMP9 and VEGF, and (8) improved hepatic structure. Among all treatments, mice co-treated with Amy (orally) and Sor (intraperitoneally) showed the best effect. With these results, we concluded that the Amy improved the antitumor effect of Sor and had a protective role on liver damage induced by EAC in mice.
Short-term effects of COVID-19 on the risk of traumatic fractures in China cities
Authors: Lv Hongzhi , Zhang Xiaolin , Wang Juan , Hou Zhiyong , Wang Haicheng , Li Chao , Wang Wenjuan , Chen Wei , Zhang Yingze 
Published: April 2022

AbstractThis study aimed to investigate the association between COVID-19 and fracture risk and provide a targeted reference for the world through China’s experience. A nationally representative sample of COVID-19 prevalence areas selected using stratified random sampling was retrospectively analyzed. Age, sex, fracture site, mechanism of injury, and concurrent fractures of traumatic fracture patients in selected hospitals were collected from 10 January to 10 July 2020. The epidemiologic characteristics of traumatic fractures and the association between COVID-19 and fracture risk were explored using descriptive epidemiological methods and a distributed lag nonlinear model. A total of 67,249 patients (52.3% males, 49.4 ± 19.4 years old) with 68,989 fractures were included. The highest proportion of fractures were in the tibia and fibula (14.9%), followed by the femur (13.6%) and ulna and radius (12.5%). Low-energy fractures accounted for 23.3%. With the increase in newly confirmed COVID-19 cases, fracture risk decreased for children, young and middle-aged adults, elderly men, high-energy fractures, and residents in regions with < 1000 cumulative confirmed COVID-19 cases. Fracture risk decreased sharply in all residents except elderly women, for low-energy fractures, and in regions with > 1000 cumulative confirmed COVID-19 cases when newly confirmed COVID-19 cases increased in China. Primary (home) prevention measures are emphasized to prevent traumatic fractures.
Investigation of a UK biobank cohort reveals causal associations of self-reported walking pace with telomere length
Authors: Dempsey Paddy C. , Musicha Crispin , Rowlands Alex V. , Davies Melanie , Khunti Kamlesh , Razieh Cameron , Timmins Iain , Zaccardi Francesco , Codd Veryan , Nelson Christopher P. , Yates Tom , Samani Nilesh J. 
Published: April 2022

AbstractWalking pace is a simple and functional form of movement and a strong predictor of health status, but the nature of its association with leucocyte telomere length (LTL) is unclear. Here we investigate whether walking pace is associated with LTL, which is causally associated with several chronic diseases and has been proposed as a marker of biological age. Analyses were conducted in 405,981 UK Biobank participants. We show that steady/average and brisk walkers had significantly longer LTL compared with slow walkers, with accelerometer-assessed measures of physical activity further supporting this through an association between LTL and habitual activity intensity, but not with total amount of activity. Bi-directional mendelian randomisation analyses suggest a causal link between walking pace and LTL, but not the other way around. A faster walking pace may be causally associated with longer LTL, which could help explain some of the beneficial effects of brisk walking on health status. Given its simple measurement and low heritability, self-reported walking pace may be a pragmatic target for interventions.
Deletion of neural estrogen receptor alpha induces sex differential effects on reproductive behavior in mice
Authors: Trouillet Anne-Charlotte , Ducroq Suzanne , Naulé Lydie , Capela Daphné , Parmentier Caroline , Radovick Sally , Hardin-Pouzet Hélène , Mhaouty-Kodja Sakina 
Published: April 2022

AbstractEstrogen receptor (ER) α is involved in several estrogen-modulated neural and peripheral functions. To determine its role in the expression of female and male reproductive behavior, a mouse line lacking the ERα in the nervous system was generated. Mutant females did not exhibit sexual behavior despite normal olfactory preference, and had a reduced number of progesterone receptor-immunoreactive neurons in the ventromedial hypothalamus. Mutant males displayed a moderately impaired sexual behavior and unaffected fertility, despite evidences of altered organization of sexually dimorphic populations in the preoptic area. In comparison, males deleted for both neural ERα and androgen receptor (AR) displayed greater sexual deficiencies. Thus, these data highlight a predominant role for neural ERα in females and a complementary role with the AR in males in the regulation of sexual behavior, and provide a solid background for future analyses of neuronal versus glial implication of these signaling pathways in both sexes.