bluuebunny/crossref_metadata_2025_split huggingface dataset:
A pathway to peptides in space through the condensation of atomic carbon
Authors: Krasnokutski S. A. , Chuang K.-J. , Jäger C. , Ueberschaar N. , Henning Th. 
Published: February 2022

AbstractOrganic molecules are widely present in the dense interstellar medium, and many have been synthesized in the laboratory on Earth under the conditions typical for an interstellar environment. Until now, however, only relatively small molecules of biological interest have been demonstrated to form experimentally under typical space conditions. Here we prove experimentally that the condensation of carbon atoms on the surface of cold solid particles (cosmic dust) leads to the formation of isomeric polyglycine monomers (aminoketene molecules). Following encounters between aminoketene molecules, they polymerize to produce peptides of different lengths. The chemistry involves three of the most abundant species (CO, C and NH3) present in star-forming molecular clouds, and proceeds via a novel pathway that skips the stage of amino acid formation in protein synthesis. The process is efficient, even at low temperatures, without irradiation or the presence of water. The delivery of biopolymers formed by this chemistry to rocky planets in the habitable zone might be an important element in the origins of life.
Widespread extinction debts and colonization credits in United States breeding bird communities
Authors: Haddou Yacob , Mancy Rebecca , Matthiopoulos Jason , Spatharis Sofie , Dominoni Davide M. 
Published: February 2022

AbstractSpecies extinctions and colonizations in response to land cover change often occur with time lags rather than instantaneously, leading to extinction debts and colonization credits. These debts and credits can lead to erroneous predictions of future biodiversity. Recent attempts to measure debts and credits have been limited to small geographical areas and have not considered multiple land cover types, or the directionality of land cover change. Here we quantify the relative contribution of past and current landscapes on the current effective number of species of 2,880 US bird communities, explicitly measuring the response of biodiversity to increases and decreases in five land cover types. We find that the current effective number of species is still largely explained by the past landscape composition (legacy effect), depending on the type, magnitude and directionality of recent land cover change. This legacy effect leads to widespread extinction debts and colonization credits. Specifically, we reveal debts across 52% of the United States, particularly in recently urbanized areas, and colonization credits in the remaining 48%, which are primarily associated with grassland decrease. We conclude that biodiversity policy targets risk becoming rapidly obsolete unless past landscapes are considered and debts and credits accounted for.
Initial analysis of viral dynamics and circulating viral variants during the mRNA-1273 Phase 3 COVE trial
Authors: Pajon Rolando , Paila Yamuna D. , Girard Bethany , Dixon Groves , Kacena Katherine , Baden Lindsey R. , El Sahly Hana M. , Essink Brandon , Mullane Kathleen M. , Frank Ian , Denhan Douglas , Kerwin Edward , Zhao Xiaoping , Ding Baoyu , Deng Weiping , Tomassini Joanne E. , Zhou Honghong , Leav Brett , Schödel Florian ,   the COVE Trial Consortium
Published: February 2022

AbstractThe mRNA-1273 vaccine for coronavirus disease 2019 (COVID-19) demonstrated 93.2% efficacy in reduction of symptomatic severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections in the blinded portion of the Phase 3 Coronavirus Efficacy (COVE) trial. While mRNA-1273 demonstrated high efficacy in prevention of COVID-19, including severe disease, its effect on the viral dynamics of SARS-CoV-2 infections is not understood. Here, in exploratory analyses, we assessed the impact of mRNA-1273 vaccination in the ongoing COVE trial (number NCT04470427) on SARS-CoV-2 copy number and shedding, burden of disease and infection, and viral variants. Viral variants were sequenced in all COVID-19 and adjudicated COVID-19 cases (n = 832), from July 2020 in the blinded part A of the study to May 2021 of the open-label part B of the study, in which participants in the placebo arm started to receive the mRNA-1273 vaccine after US Food and Drug Administration emergency use authorization of mRNA-1273 in December 2020. mRNA-1273 vaccination significantly reduced SARS-CoV-2 viral copy number (95% confidence interval) by 100-fold on the day of diagnosis compared with placebo (4.1 (3.4–4.8) versus 6.2 (6.0–6.4) log10 copies per ml). Median times to undetectable viral copies were 4 days for mRNA-1273 and 7 days for placebo. Vaccination also substantially reduced the burden of disease and infection scores. Vaccine efficacies (95% confidence interval) against SARS-CoV-2 variants circulating in the United States during the trial assessed in this post hoc analysis were 82.4% (40.4–94.8%) for variants Epsilon and Gamma and 81.2% (36.1–94.5%) for Epsilon. The detection of other, non-SARS-CoV-2, respiratory viruses during the trial was similar between groups. While additional study is needed, these data show that in SARS-CoV-2-infected individuals, vaccination reduced both the viral copy number and duration of detectable viral RNA, which may be markers for the risk of virus transmission.
Effective treatment of aquaculture wastewater with mussel/microalgae/bacteria complex ecosystem: a pilot study
Authors: Geng Bing , Li Yongchao , Liu Xue , Ye Jing , Guo Weifeng 
Published: February 2022

AbstractThe discharge of aquaculture wastewater increased significantly in China. Especially, high content of nitrogen and phosphorus in wastewater could destroy the receiving water environment. To reduce the pollution of aquaculture wastewater, farmed triangle sail mussel (Hyriopsis cumingii) was proposed to be cultivated in the river. This was the first time that bacteria (Bacillus subtilis and Bacillus licheniformis) and microalgae (Chlorella vulgaris) were also used and complemented ecosystem functions. The pollutants in wastewater were assimilated by Chlorella vulgaris biomass, which was then removed through continuous filter-feeding of Hyriopsis cumingii. While, Bacillus subtilis and Bacillus licheniformis enhanced the digestive enzyme activities of mussel. It demonstrated that approximately 4 mussels/m3 was the optimal breeding density. Under such condition, orthogonal experiment indicated that the dose of Bacillus subtilis, Bacillus licheniformis, and Chlorella vulgaris should be 0.5, 1, and 2 mL respectively. Compared with mussel, mussel/microalgae, mussel/bacteria system, treatment ability of the mussel/microalgae/bacteria system in batch experiment was better, and 94.67% of NH3-N, 92.89% of TP and 77.78% of COD were reduced after reaction for 6 days. Finally, 90 thousand mussels per hectare of water were cultivated in Kulv river in China, and the field experiment showed that water quality was significantly improved. After about 35 days of operation, NH3-N, TN, TP and COD concentration were maintained around 0.3, 0.8, 0.3, and 30 mg/L respectively. Therefore, the mussel/microalgae /bacteria system in this study showed a sustainable and efficient characteristic of aquaculture wastewater bioremediation.
Effect of pressure controlled volume guaranteed ventilation during pulmonary resection in children
Authors: Zhu Change , Zhang Rufang , Yu Shenghua , Zhang Yuting , Wei Rong 
Published: February 2022

AbstractThe purpose of the study was to evaluate the effect of pressure controlled volume guaranteed ventilation in children requiring one lung ventilation during pulmonary resection. Patients were randomly assigned to the lung protective ventilation combined with pressure controlled volume guaranteed group (PCV-VG group) or the lung protective ventilation combined with volume controlled ventilation group (VCV group). Both groups received tidal-volume ventilation of 8 ml kg−1 body weight during two lung ventilation and 6 ml kg−1 during OLV, with sustained 5 cmH2O positive end-expiratory pressure. Data collections were mainly performed at 10 min after induction of anaesthesia during TLV (T1), 5 min after OLV initiation (T2) and 5 min after complete CO2 insufflations (T3). In total, 63 patients were randomly assigned to the VCV (n = 31) and PCV-VG (n = 32) groups. The PCV-VG group exhibited lower PIP than the VCV group at T1 (16.8 ± 2.3 vs. 18.7 ± 2.7 cmH2O, P = 0.001), T2 (20.2 ± 2.7 vs. 22.4 ± 3.3 cmH2O, P = 0.001), and T3 (23.8 ± 3.2 vs. 26.36 ± 3.7 cmH2O, P = 0.01). Static compliance was higher in the PCV-VG group at T1, T2, and T3 (P = 0.01). After anaesthesia induction, lung aeration deteriorated, but with no immediate postoperative difference in both groups. Postoperative lung aeration improved and returned to normal from 2.5 h postextubation in both groups. PH was lower and PaCO2 was higher in VCV group than PCV-VG group during one lung ventilation. No differences were observed in PaO2-FiO2-ratio at T2 and T3, the incidence of postoperative pulmonary complications, intraoperative desaturation and the length of hospital stay. In paediatric patients, who underwent pulmonary resection requiring one lung ventilation, PCV-VG was superior to VCV in its ability to provide lower PIP, higher static compliance and lower PaCO2 at one lung ventilation during pneumothorax. However, its beneficial effects on different pathological situations in pediatric patients need more investigation.
The first occurrence of an avian-style respiratory infection in a non-avian dinosaur
Authors: Woodruff D. Cary , Wolff Ewan D. S. , Wedel Mathew J. , Dennison Sophie , Witmer Lawrence M. 
Published: February 2022

AbstractOther than repaired fractures, osteoarthritis, and periosteal reaction, the vertebrate fossil record has limited evidence of non-osseous diseases. This difficulty in paleontological diagnoses stems from (1) the inability to conduct medical testing, (2) soft-tissue pathologic structures are less likely to be preserved, and (3) many osseous lesions are not diagnostically specific. However, here reported for the first time is an avian-style respiratory disorder in a non-avian dinosaur. This sauropod presents irregular bony pathologic structures stemming from the pneumatic features in the cervical vertebrae. As sauropods show well-understood osteological correlates indicating that respiratory tissues were incorporated into the post-cranial skeleton, and thus likely had an ‘avian-style’ form of respiration, it is most parsimonious to identify these pathologic structures as stemming from a respiratory infection. Although several extant avian infections produce comparable symptoms, the most parsimonious is airsacculitis with associated osteomyelitis. From actinobacterial to fungal in origin, airsacculitis is an extremely prevalent respiratory disorder in birds today. While we cannot pinpoint the specific infectious agent that caused the airsacculitis, this diagnosis establishes the first fossil record of this disease. Additionally, it allows us increased insight into the medical disorders of dinosaurs from a phylogenetic perspective and understanding what maladies plagued the “fearfully great lizards”.
Rapid development of an integrated remote programming platform for neuromodulation systems through the biodesign process
Authors: Silburn Peter , DeBates Scott , Tomlinson Tucker , Schwark Jeremy , Creek Gregory , Patel Hiren , Punnoose Asish , Cheeran Binith , Ross Erika , Lautner Douglas , Pathak Yagna J. 
Published: February 2022

AbstractTreating chronic symptoms for pain and movement disorders with neuromodulation therapies involves fine-tuning of programming parameters over several visits to achieve and maintain symptom relief. This, together with challenges in access to trained specialists, has led to a growing need for an integrated wireless remote care platform for neuromodulation devices. In March of 2021, we launched the first neuromodulation device with an integrated remote programming platform. Here, we summarize the biodesign steps taken to identify the unmet patient need, invent, implement, and test the new technology, and finally gain market approval for the remote care platform. Specifically, we illustrate how agile development aligned with the evolving regulatory requirements can enable patient-centric digital health technology in neuromodulation, such as the remote care platform. The three steps of the biodesign process applied for remote care platform development are: (1) Identify, (2) Invent, and (3) Implement. First, we identified the unmet patient needs through market research and voice-of-customer (VOC) process. Next, during the concept generation phase of the invention step, we integrated the results from the VOC into defining requirements for prototype development. Subsequently, in the concept screening phase, ten subjects with PD participated in a clinical pilot study aimed at characterizing the safety of the remote care prototype. Lastly, during the implementation step, lessons learned from the pilot experience were integrated into final product development as new features. Following final product development, we completed usability testing to validate the full remote care system and collected preliminary data from the limited market release experience. The VOC data, during prototype development, helped us identify thresholds for video quality and needs priorities for clinicians and patients. During the pilot study, one subject reported anticipated remote–care-related adverse events that were resolved without sequelae. For usability analysis following final product development, the failure rates for task completion for both user groups were about 1%. Lastly, during the initial 4 weeks of the limited market release experience, a total of 858 remote care sessions were conducted with a 93% success rate. Overall, we developed a remote care platform by adopting a user-centric approach. Although the system intended to address pre-COVID19 challenges associated with disease management, the unforeseen overlap of the study with the pandemic elevated the importance of such a system and an innovative development process enabled us to advance a patient-centric platform to gain regulatory approval and successfully launch the remote care platform to market.
Leg length discrepancy after in situ fixation with screw for slipped capital femoral epiphysis
Authors: Kim Sungmin , Park Kun-Bo , Kim Hyun Woo , Kim Jong Eun , Park Hoon 
Published: February 2022

AbstractAlthough leg length discrepancy (LLD) commonly occurs following in situ fixation with screws for slipped capital femoral epiphysis (SCFE), the literature regarding this issue is scarce. The purpose of this study was to evaluate the degree of LLD in patients who had been treated with in situ fixation with screws and to identify the risk factors for the development of LLD. We retrospectively reviewed 44 patients (mild slip 24, moderate slip, 20) who were treated with in situ fixation with screws for SCFE. The mean age at surgery was 12.2 years and the mean follow-up period was 6.9 years. We investigated the relationship between the final LLD, articulotrochanteric distance difference (ATDD) at skeletal maturity, and various clinical and radiographic parameters using linear regression analysis. The mean values of LLD and ATDD were 13.1 and 11.1 mm, respectively. The LLD and ATDD was significantly higher in patients with moderate slips than in those with mild slips. The degree of slip angle was associated with the degree of LLD only. While there was no significant factor affecting the LLD in moderate slips, younger age and a larger degree of slip angle were associated with the degree of LLD. The degree of slip was the only factor that affected LLD in patients with mild or moderate SCFE who underwent threaded screw fixation. Age at surgery was not associated with LLD, and there were no factors related to the degree of LLD in mild slip. Monitoring for LLD may only be necessary for patients with moderate slip who are treated with in situ screw fixation.
Co-benefits of forest carbon projects in Southeast Asia
Authors: Sarira Tasya Vadya , Zeng Yiwen , Neugarten Rachel , Chaplin-Kramer Rebecca , Koh Lian Pin 
Published: February 2022

AbstractForest carbon projects can deliver multiple benefits to society. Within Southeast Asia, 58% of forests threatened by loss could be protected as financially viable carbon projects, which would avoid 835 MtCO2e of emissions per year from deforestation, support dietary needs for an equivalent of 323,739 people annually from pollinator-dependent agriculture, retain 78% of the volume of nitrogen pollutants in watersheds yearly and safeguard 25 Mha of Key Biodiversity Areas.
The C-terminal tail of α-synuclein protects against aggregate replication but is critical for oligomerization
Authors: Farzadfard Azad , Pedersen Jannik Nedergaard , Meisl Georg , Somavarapu Arun Kumar , Alam Parvez , Goksøyr Louise , Nielsen Morten Agertoug , Sander Adam Frederik , Knowles Tuomas P. J. , Pedersen Jan Skov , Otzen Daniel Erik 
Published: February 2022

AbstractAggregation of the 140-residue protein α-synuclein (αSN) is a key factor in the etiology of Parkinson’s disease. Although the intensely anionic C-terminal domain (CTD) of αSN does not form part of the amyloid core region or affect membrane binding ability, truncation or reduction of charges in the CTD promotes fibrillation through as yet unknown mechanisms. Here, we study stepwise truncated CTDs and identify a threshold region around residue 121; constructs shorter than this dramatically increase their fibrillation tendency. Remarkably, these effects persist even when as little as 10% of the truncated variant is mixed with the full-length protein. Increased fibrillation can be explained by a substantial increase in self-replication, most likely via fragmentation. Paradoxically, truncation also suppresses toxic oligomer formation, and oligomers that can be formed by chemical modification show reduced membrane affinity and cytotoxicity. These remarkable changes correlate to the loss of negative electrostatic potential in the CTD and highlight a double-edged electrostatic safety guard.
High-resolution stalagmite stratigraphy supports the Late Holocene tephrochronology of southernmost Patagonia
Authors: Klaes Björn , Wörner Gerhard , Kremer Katrina , Simon Klaus , Kronz Andreas , Scholz Denis , Mueller Carsten W. , Höschen Carmen , Struck Julian , Arz Helge Wolfgang , Thiele-Bruhn Sören , Schimpf Daniel , Kilian Rolf 
Published: February 2022

AbstractVolcanic ash layers are important markers for the chronostratigraphy of paleoclimate and paleoenvironmental archives at the southern tip of South America. However, this requires that tephras are well-dated. We report geochemical data from stalagmite MA1 formed in a non-karst cave near Mt. Burney volcano in southernmost Patagonia (~53°S). High-resolution LA-ICP-MS analyses, SEM imagery, EPMA data, and NanoSIMS enable to identify volcanogenic signals during the last 4.5 kyrs from sub-annual trace element variations and tephra particles in distinct laminae. Our new 230Th/U-chronology of MA1 provides precise dating of tephra from Mt. Burney (MB) and, probably, Aguilera (A) at 4,216 +93/−193 yrs BP (MB2), 2,291 ± 33 yrs BP (MB3), 853 +41/−60 yrs BP (MB4) and 2,978 +91/−104 yrs BP (A1). This unique high-resolution record holds potential to date further eruptions from Southern Andean volcanoes for the tephrochronology in this critical region, and potentially also large-volume explosive volcanism off South America.
Modelling the impact of vaccine hesitancy in prolonging the need for Non-Pharmaceutical Interventions to control the COVID-19 pandemic
Authors: Olivera Mesa Daniela , Hogan Alexandra B. , Watson Oliver J. , Charles Giovanni D. , Hauck Katharina , Ghani Azra C. , Winskill Peter 
Published: February 2022

Abstract
Background
Vaccine hesitancy – a delay in acceptance or refusal of vaccines despite availability – has the potential to threaten the successful roll-out of SARS-CoV-2 vaccines globally. In this study, we aim to understand the likely impact of vaccine hesitancy on the control of the COVID-19 pandemic.

Methods
We modelled the potential impact of vaccine hesitancy on the control of the pandemic and the relaxation of non-pharmaceutical interventions (NPIs) by combining an epidemiological model of SARS-CoV-2 transmission with data on vaccine hesitancy from population surveys.

Results
Our simulations suggest that the mortality over a 2-year period could be up to 7.6 times higher in countries with high vaccine hesitancy compared to an ideal vaccination uptake if NPIs are relaxed. Alternatively, high vaccine hesitancy could prolong the need for NPIs to remain in place.

Conclusions
While vaccination is an individual choice, vaccine-hesitant individuals have a substantial impact on the pandemic trajectory, which may challenge current efforts to control COVID-19. In order to prevent such outcomes, addressing vaccine hesitancy with behavioural interventions is an important priority in the control of the COVID-19 pandemic.
Foudroyant cerebral venous (sinus) thrombosis triggered through CLEC-2 and GPIIb/IIIa dependent platelet activation
Authors: Stegner David , Göb Vanessa , Krenzlin Viola , Beck Sarah , Hemmen Katherina , Schuhmann Michael K. , Schörg Barbara F. , Hackenbroch Christian , May Frauke , Burkard Philipp , Pinnecker Jürgen , Zernecke Alma , Rosenberger Peter , Greinacher Andreas , Pichler Bernd J. , Heinze Katrin G. , Stoll Guido , Nieswandt Bernhard 
Published: February 2022

AbstractCerebral venous (sinus) thrombosis (CVT) is an unusual manifestation of venous thrombosis causing severe neurological impairment and seizures1,2. Molecular mechanisms underlying CVT, potentially involving pathological platelet activation, are unknown. Here we show that antibody-(INU1-fab)-induced cooperative signaling of two platelet receptors, C-type lectin-like receptor-2 (CLEC-2) and GPIIb/IIIa, triggers within minutes a CVT-like thrombotic syndrome in mice, characterized by tonic–myoclonic seizures, platelet consumption and death. Brain autopsy showed thrombi mainly in the cortical venules, but no intracranial hemorrhages or edema formation. Transcranial intravital microscopy revealed rapidly progressing thrombosis in the superior sagittal sinus, a main site of CVT in humans. Interfering with CLEC-2 signaling or inhibition of GPIIb/IIIa completely blocked platelet activation and CVT. Blocking GPIIb/IIIa after onset of neurological symptoms protected mice from platelet consumption, CVT and death, which was not seen after treatment with heparin. These results point to aberrant platelet activation as a major trigger of CVT and potential target for treatment.
Digital light processing (DLP) 3D-fabricated antimicrobial hydrogel with a sustainable resin of methacrylated woody polysaccharides and hybrid silver-lignin nanospheres
Authors: Wang Luyao , Wang Qingbo , Slita Anna , Backman Oskar , Gounani Zahra , Rosqvist Emil , Peltonen Jouko , Willför Stefan , Xu Chunlin , Rosenholm Jessica M. , Wang Xiaoju 
Published: February 2022

Efficient antimicrobial hydrogels are fabricated by digital light processing (DLP) printing out of a sustainable resin, which is formulated with methacrylated O-acetyl-galactoglucomannan and lignin nanospheres decorated with silver nanoparticles.