bluuebunny/crossref_metadata_2025_split huggingface dataset:
Different hotspot p53 mutants exert distinct phenotypes and predict outcome of colorectal cancer patients
Authors: Hassin Ori , Nataraj Nishanth Belugali , Shreberk-Shaked Michal , Aylon Yael , Yaeger Rona , Fontemaggi Giulia , Mukherjee Saptaparna , Maddalena Martino , Avioz Adi , Iancu Ortal , Mallel Giuseppe , Gershoni Anat , Grosheva Inna , Feldmesser Ester , Ben-Dor Shifra , Golani Ofra , Hendel Ayal , Blandino Giovanni , Kelsen David , Yarden Yosef , Oren Moshe 
Published: May 2022

AbstractThe TP53 gene is mutated in approximately 60% of all colorectal cancer (CRC) cases. Over 20% of all TP53-mutated CRC tumors carry missense mutations at position R175 or R273. Here we report that CRC tumors harboring R273 mutations are more prone to progress to metastatic disease, with decreased survival, than those with R175 mutations. We identify a distinct transcriptional signature orchestrated by p53R273H, implicating activation of oncogenic signaling pathways and predicting worse outcome. These features are shared also with the hotspot mutants p53R248Q and p53R248W. p53R273H selectively promotes rapid CRC cell spreading, migration, invasion and metastasis. The transcriptional output of p53R273H is associated with preferential binding to regulatory elements of R273 signature genes. Thus, different TP53 missense mutations contribute differently to cancer progression. Elucidation of the differential impact of distinct TP53 mutations on disease features may make TP53 mutational information more actionable, holding potential for better precision-based medicine.
Lipid droplet degradation by autophagy connects mitochondria metabolism to Prox1-driven expression of lymphatic genes and lymphangiogenesis
Authors: Meçe Odeta , Houbaert Diede , Sassano Maria-Livia , Durré Tania , Maes Hannelore , Schaaf Marco , More Sanket , Ganne Maarten , García-Caballero Melissa , Borri Mila , Verhoeven Jelle , Agrawal Madhur , Jacobs Kathryn , Bergers Gabriele , Blacher Silvia , Ghesquière Bart , Dewerchin Mieke , Swinnen Johan V. , Vinckier Stefan , Soengas María S. , Carmeliet Peter , Noël Agnès , Agostinis Patrizia 
Published: May 2022

AbstractAutophagy has vasculoprotective roles, but whether and how it regulates lymphatic endothelial cells (LEC) homeostasis and lymphangiogenesis is unknown. Here, we show that genetic deficiency of autophagy in LEC impairs responses to VEGF-C and injury-driven corneal lymphangiogenesis. Autophagy loss in LEC compromises the expression of main effectors of LEC identity, like VEGFR3, affects mitochondrial dynamics and causes an accumulation of lipid droplets (LDs) in vitro and in vivo. When lipophagy is impaired, mitochondrial ATP production, fatty acid oxidation, acetyl-CoA/CoA ratio and expression of lymphangiogenic PROX1 target genes are dwindled. Enforcing mitochondria fusion by silencing dynamin-related-protein 1 (DRP1) in autophagy-deficient LEC fails to restore LDs turnover and lymphatic gene expression, whereas supplementing the fatty acid precursor acetate rescues VEGFR3 levels and signaling, and lymphangiogenesis in LEC-Atg5−/− mice. Our findings reveal that lipophagy in LEC by supporting FAO, preserves a mitochondrial-PROX1 gene expression circuit that safeguards LEC responsiveness to lymphangiogenic mediators and lymphangiogenesis.
Citizen-science reveals changes in the oral microbiome in Spain through age and lifestyle factors
Authors: Willis Jesse R. , Saus Ester , Iraola-Guzmán Susana , Ksiezopolska Ewa , Cozzuto Luca , Bejarano Luis A. , Andreu-Somavilla Nuria , Alloza-Trabado Miriam , Blanco Andrea , Puig-Sola Anna , Broglio Elisabetta , Carolis Carlo , Ponomarenko Julia , Hecht Jochen , Gabaldón Toni 
Published: May 2022

AbstractThe relevance of the human oral microbiome to our understanding of human health has grown in recent years as microbiome studies continue to develop. Given the links of the oral cavity with the digestive, respiratory and circulatory systems, the composition of the oral microbiome is relevant beyond just oral health, impacting systemic processes across the body. However, we still have a very limited understanding about intrinsic and extrinsic factors that shape the composition of the healthy oral microbiome. Here, we followed a citizen-science approach to assess the relative impact on the oral microbiome of selected biological, social, and lifestyle factors in 1648 Spanish individuals. We found that the oral microbiome changes across age, with middle ages showing a more homogeneous composition, and older ages showing more diverse microbiomes with increased representation of typically low abundance taxa. By measuring differences within and between groups of individuals sharing a given parameter, we were able to assess the relative impact of different factors in driving specific microbial compositions. Chronic health disorders present in the analyzed population were the most impactful factors, followed by smoking and the presence of yeasts in the oral cavity. Finally, we corroborate findings in the literature that relatives tend to have more similar oral microbiomes, and show for the first time a similar effect for classmates. Multiple intrinsic and extrinsic factors jointly shape the oral microbiome. Comparative analysis of metabarcoding data from a large sample set allows us to disentangle the individual effects.
Reversible hydrogenation of carbon dioxide to formic acid using a Mn-pincer complex in the presence of lysine
Authors: Wei Duo , Sang Rui , Sponholz Peter , Junge Henrik , Beller Matthias 
Published: May 2022

AbstractEfficient hydrogen storage and release are essential for effective use of hydrogen as an energy carrier. In principle, formic acid could be used as a convenient hydrogen storage medium via reversible CO2 hydrogenation. However, noble metal-based catalysts are currently needed to facilitate the (de)hydrogenation, and the CO2 produced during hydrogen release is generally released, resulting in undesirable emissions. Here we report an α-amino acid-promoted system for reversible CO2 hydrogenation to formic acid using a Mn-pincer complex as a homogeneous catalyst. We observe good stability and reusability of the catalyst and lysine as the amino acid at high productivities (CO2 hydrogenation: total turnover number of 2,000,000; formic acid dehydrogenation: total turnover number of 600,000). Employing potassium lysinate, we achieve >80% H2 evolution efficiency and >99.9% CO2 retention in ten charge–discharge cycles, avoiding CO2 re-loading steps between each cycle. This process was scaled up by a factor of 18 without obvious drop of the productivity.
Label-free complete absorption microscopy using second generation photoacoustic remote sensing
Authors: Ecclestone Benjamin R. , Bell Kevan , Sparkes Sarah , Dinakaran Deepak , Mackey John R. , Haji Reza Parsin 
Published: May 2022

AbstractIn the past decades, absorption modalities have emerged as powerful tools for label-free functional and structural imaging of cells and tissues. Many biomolecules present unique absorption spectra providing chromophore-specific information on properties such as chemical bonding, and sample composition. As chromophores absorb photons the absorbed energy is emitted as photons (radiative relaxation) or converted to heat and under specific conditions pressure (non-radiative relaxation). Modalities like fluorescence microscopy may capture radiative relaxation to provide contrast, while modalities like photoacoustic microscopy may leverage non-radiative heat and pressures. Here we show an all-optical non-contact total-absorption photoacoustic remote sensing (TA-PARS) microscope, which can capture both radiative and non-radiative absorption effects in a single acquisition. The TA-PARS yields an absorption metric proposed as the quantum efficiency ratio (QER), which visualizes a biomolecule’s proportional radiative and non-radiative absorption response. The TA-PARS provides label-free visualization of a range of biomolecules enabling convincing analogues to traditional histochemical staining of tissues, effectively providing label-free Hematoxylin and Eosin (H&E)-like visualizations. These findings establish an effective all-optical non-contact total-absorption microscope for label-free inspection of biological materials.
Effects of different dual task training on dual task walking and responding brain activation in older adults with mild cognitive impairment
Authors: Kuo Hsiang-Tsen , Yeh Nai-Chen , Yang Yea-Ru , Hsu Wen-Chi , Liao Ying-Yi , Wang Ray-Yau 
Published: May 2022

AbstractThe concurrent additional tasking impacts the walking performance, and such impact is even greater in individuals with mild cognitive impairment (MCI) than in healthy elders. However, effective training program to improve dual task walking ability for the people with MCI is not immediately provided. Therefore, this study aimed to determine the effects of cognitive and motor dual task walking training on dual task walking performance and the responding brain changes in older people with MCI. Thirty older adults with MCI were randomly allocated to receive 24 sessions of 45-min cognitive dual task training (CDTT, n = 9), motor dual task training (MDTT, n = 11), or conventional physical therapy (CPT, n = 10). Gait performance and brain activation during single and dual task walking, and cognitive function assessed by trail-making test (TMT-A, B) and digit span test were measured at pre-, post-test, and 1-month follow-up. Both CDTT and MDTT improved dual task walking with responding activation changes in specific brain areas. The improvements in motor dual task walking performance after both dual task trainings were significantly better than after CPT in the older adults with MCI. Both cognitive and motor dual task training were feasible and beneficial to improve dual task walking ability in older adults with MCI.Trial Registration: The trial was registered to Thai Clinical Trial Registry and the registration number is TCTR20180510002 (first registration date: 10/05/2018).
Alien suns reversing in exoplanet skies
Authors: Xie Xinchen , Bae Hwan , Lindner John F. 
Published: May 2022

AbstractEarth’s rapid spin, modest tilt, and nearly circular orbit ensure that the sun always appears to move forward, rising in the east and setting in the west. However, for some exoplanets, solar motion can reverse causing alien suns to apparently move backward. Indeed, this dramatic motion marginally occurs for Mercury in our own solar system. For exoplanetary observers, we study the scope of solar motion as a function of eccentricity, spin–orbit ratio, obliquity, and nodal longitude, and we visualize the motion in spatial and spacetime plots. For zero obliquity, reversals occur when a planet’s spin angular speed is between its maximum and minimum orbital angular speeds, and we derive exact nonlinear equations for eccentricity and spin–orbit to bound reversing and non-reversing motion. We generalize the notion of solar day to gracefully handle the most common reversals.
C-reactive protein to albumin ratio predicts survival in patients with unresectable hepatocellular carcinoma treated with lenvatinib
Authors: Tada Toshifumi , Kumada Takashi , Hiraoka Atsushi , Hirooka Masashi , Kariyama Kazuya , Tani Joji , Atsukawa Masanori , Takaguchi Koichi , Itobayashi Ei , Fukunishi Shinya , Tsuji Kunihiko , Ishikawa Toru , Tajiri Kazuto , Ochi Hironori , Yasuda Satoshi , Toyoda Hidenori , Hatanaka Takeshi , Kakizaki Satoru , Shimada Noritomo , Kawata Kazuhito , Tanaka Takaaki , Ohama Hideko , Nouso Kazuhiro , Morishita Asahiro , Tsutsui Akemi , Nagano Takuya , Itokawa Norio , Okubo Tomomi , Arai Taeang , Imai Michitaka , Naganuma Atsushi , Aoki Tomoko , Koizumi Yohei , Nakamura Shinichiro , Joko Kouji , Hiasa Yoichi , Kudo Masatoshi 
Published: May 2022

AbstractWe investigated the impact of C-reactive protein to albumin ratio (CAR) on predicting outcomes in 522 patients with unresectable hepatocellular carcinoma (HCC) treated with lenvatinib. We determined the optimal CAR cutoff value with time-dependent receiver operating characteristic curve analysis. Additionally, we clarified the relationship between CAR and liver function or HCC progression. Median overall survival was 20.0 (95% confidence interval (CI), 17.2–22.6) months. The optimal CAR cutoff value was determined to be 0.108. Multivariate analysis showed that high CAR (≥ 0.108) (hazard ratio (HR), 1.915; 95% CI, 1.495–2.452), Eastern Cooperative Oncology Group performance status ≥ 1 (HR, 1.429), and α-fetoprotein ≥ 400 ng/mL (HR, 1.604) were independently associated with overall survival. Cumulative overall survival differed significantly between patients with low versus high CAR (p < 0.001). Median progression-free survival was 7.5 (95% CI, 6.7–8.1) months. Multivariate analysis showed that age, CAR ≥ 0.108 (HR, 1.644; 95% CI, 1.324–2.043), and non-hepatitis B, non-hepatitis C etiology (HR, 0.726) were independently associated with progression-free survival. Cumulative progression-free survival differed significantly between patients with low versus high CAR (p < 0.001). CAR values were significantly higher as Japan Integrated Staging score increased (p < 0.001). In conclusion, CAR can predict outcomes in patients with unresectable HCC treated with lenvatinib.
Conformational spread drives the evolution of the calcium–calmodulin protein kinase II
Authors: Khan Shahid 
Published: May 2022

AbstractThe calcium calmodulin (Ca2+/CaM) dependent protein kinase II (CaMKII) decodes Ca2+ frequency oscillations. The CaMKIIα isoform is predominantly expressed in the brain and has a central role in learning. I matched residue and organismal evolution with collective motions deduced from the atomic structure of the human CaMKIIα holoenzyme to learn how its ring architecture abets function. Protein dynamic simulations showed its peripheral kinase domains (KDs) are conformationally coupled via lateral spread along the central hub. The underlying β-sheet motions in the hub or association domain (AD) were deconvolved into dynamic couplings based on mutual information. They mapped onto a coevolved residue network to partition the AD into two distinct sectors. A second, energetically stressed sector was added to ancient bacterial enzyme dimers for assembly of the ringed hub. The continued evolution of the holoenzyme after AD–KD fusion targeted the sector’s ring contacts coupled to the KD. Among isoforms, the α isoform emerged last and, it alone, mutated rapidly after the poikilotherm–homeotherm jump to match the evolution of memory. The correlation between dynamics and evolution of the CaMKII AD argues single residue substitutions fine-tune hub conformational spread. The fine-tuning could increase CaMKIIα Ca2+ frequency response range for complex learning functions.
Polarization insensitive dual band metamaterial with absorptance for 5G sub-6 GHz applications
Authors: Hasan Md. Mhedi , Islam Mohammad Tariqul , M. M. Salaheldeen , Almalki Sami H. A. , Alharbi Abdullah G. , Alsaif Haitham , Islam Md. Shabiul , Samsuzzaman Md. 
Published: May 2022

AbstractA couple ring enclosed circular geometric resonator (CRECGR) based dual-band polarization insensitive metamaterial (MM) with high effective medium ratio (EMR), and excellent absorptance is proposed in this study, which can be utilized as a sensor and absorber in the 5G sub-6 GHz frequency range. A circular geometry-based unique patch has been introduced in the proposed unit cell to achieve high polarization insensitive properties with excellent absorption for the 5G sub-6 GHz spectrum. The distinctive feature of this proposed CRECGR unit cell is its simple and unique structure with a high EMR of 11.13, polarization insensitive up to 180°, and epsilon negative (ENG) properties, including a negative refractive index and near-zero permeability for 5G sub-6 GHz applications. Furthermore, this designed unit cell yields excellent absorption properties with high quality factor. The designed MM unit cell is fabricated on low loss Rogers RT5880 printed media with an electrical dimension of 0.089λ × 0.089λ × 0.017λ. The performance of the designed CRECGR metamaterial is determined using Computer Simulation Technology (CST), Advanced Design Software (ADS), and measurements. The CRECGR unit cell offers dual resonances at 3.37 GHz and 5.8 GHz, covering the 5G sub-6 GHz band with ENG, near-zero permeability and negative index. The polarization insensitive properties of the unit cell were also investigated for maximum angle of incidence, which confirmed the identical response. The simulated outcome is verified by experiment with excellent accordance. Moreover, the unit cell performance with a complete backplane is explored, noting a maximum absorption of 99.9% for all normal and oblique incidence waves, suitable for sensing and antenna systems. In addition, the suggested unit cell sensing performance is evaluated using the permittivity-based sensing model. The proposed MM outperforms recent related studies in terms of polarization insensitivity up to 180°, high insensitive absorptivity, high EMR, and sensing applications. These features prove that the proposed CRECGR metamaterial is perfect for 5G Applications.
In vitro preliminary study on different anti-PD-1 antibody concentrations on T cells activation
Authors: Wieleba Irena , Wojas-Krawczyk Kamila , Chmielewska Izabela , Wójcik-Superczyńska Magdalena , Krawczyk Paweł , Milanowski Janusz 
Published: May 2022

AbstractLung adenocarcinoma predominates among diagnosed nonsmall cell lung cancer subtypes in nonsmokers. The introduction of immune checkpoint inhibitors into clinical practice offered patients prolonged progression-free survival and overall survival times. However, the results demonstrate that the benefits do not apply to all patients. Nivolumab is a monoclonal antibody against the PD-1 protein expressed mainly on T lymphocytes and is widely used in cancer therapy in different settings. Tumor cells often express the PD-L1 molecule and can effectively block the action of PD-1-positive lymphocytes. A body of knowledge regarding the high expression of PD-L1 on tumor cells highlights that it does not always correlate with the effectiveness of anti-PD-1 therapy. The side effects of the therapy also constitute a significant issue. These side effects can occur at any time during anti-PD-1 treatment and lead to discontinuation and even the death of the patient. In these situations, it is possible to delay the dosage. Nevertheless, unfortunately, it is not possible to reduce the dose of anti-PD-1 antibody, which would undoubtedly minimize side effects, leaving the patient's immune system active. In our preliminary study, we analyzed the effect of different concentrations of nivolumab on the functioning of T lymphocytes. Activation and proliferation markers were investigated on T cells after being cultured with antigen-stimulated autologous dendritic cells. This process may indicate an appropriate concentration of nivolumab, which shows clinical activity with minimal side effects.
Torsional wave elastography to assess the mechanical properties of the cornea
Authors: Torres Jorge , H. Faris Inas , Callejas Antonio , Reyes-Ortega Felisa , Melchor Juan , Gonzalez-Andrades Miguel , Rus Guillermo 
Published: May 2022

AbstractCorneal mechanical changes are believed to occur before any visible structural alterations observed during routine clinical evaluation. This study proposed developing an elastography technique based on torsional waves (TWE) adapted to the specificities of the cornea. By measuring the displacements in the propagation plane perpendicular to the axis of the emitter, the effect of guided waves in plate-like media was proven negligible. Ex vivo experiments were carried out on porcine corneal samples considering a group of control and one group of alkali burn treatment ($$\hbox {NH}_\text {4}$$

NH
4

OH) that modified the mechanical properties. Phase speed was recovered as a function of intraocular pressure (IOP), and a Kelvin-Voigt rheological model was fitted to the dispersion curves to estimate viscoelastic parameters. A comparison with uniaxial tensile testing with thin-walled assumptions was also performed. Both shear elasticity and viscosity correlated positively with IOP, being the elasticity lower and the viscosity higher for the treated group. The viscoelastic parameters ranged from 21.33 to 63.17 kPa, and from 2.82 to 5.30 Pa s, for shear elasticity and viscosity, respectively. As far as the authors know, no other investigations have studied this mechanical plane under low strain ratios, typical of dynamic elastography in corneal tissue. TWE reflected mechanical properties changes after treatment, showing a high potential for clinical diagnosis due to its rapid performance time and paving the way for future in vivo studies.
Synthesis and robocasting of YAG xerogel: one-step conversion of ceramics
Authors: Flores-Martinez Nancy , Ouamara Lila , Remondiere Fabien , Jouin Jenny , Fiore Giuseppe , Oriol Stephane , Rossignol Sylvie 
Published: May 2022

AbstractAn optimized sol–gel protocol was carried out to produce an yttrium aluminum garnet (YAG) xerogel from aluminum alkoxide and an yttrium salt on a semi-pilot scale. This xerogel was successfully used without prior pyrolysis as a solid load with the aid of additives in the preparation of pastes. Thermal treatment of the green bodies, obtained by robocasting of the paste, led to cohesive single-phase YAG ceramics. Manufacturing ceramic pieces by additive methods will allow shaping complex forms, while the single step conversion/consolidation would simplify the technological process, reducing global energy costs. Since YAG possesses high strength and good creep behavior at high temperatures, these refractory pieces could replace the metal alloys used in turbine blades for deep space exploration. Structural, thermal and chemical characterizations were performed on xerogel powders, pastes, and YAG ceramics.
Diversity, distribution and ecology of fungal communities present in Antarctic lake sediments uncovered by DNA metabarcoding
Authors: de Souza Láuren Machado Drumond , Lirio Juan Manuel , Coria Silvia Herminda , Lopes Fabyano Alvares Cardoso , Convey Peter , Carvalho-Silva Micheline , de Oliveira Fábio Soares , Rosa Carlos Augusto , Câmara Paulo Eduardo Aguiar Saraiva , Rosa Luiz Henrique 
Published: May 2022

AbstractWe assessed fungal diversity in sediments obtained from four lakes in the South Shetland Islands and James Ross Island, Antarctica, using DNA metabarcoding. We detected 218 amplicon sequence variants (ASVs) dominated by the phyla Ascomycota, Basidiomycota, Mortierellomycota, Mucoromycota and Chytridiomycota. In addition, the rare phyla Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Monoblepharomycota, Rozellomycota and Zoopagomycota as well as fungal-like Straminopila belonging to the phyla Bacillariophyta and Oomycota were detected. The fungal assemblages were dominated by unknown fungal taxa (Fungal sp. 1 and Fungal sp. 2), followed by Talaromyces rubicundus and Dactylonectria anthuriicola. In general, they displayed high diversity, richness and moderate dominance. Sequences representing saprophytic, pathogenic and symbiotic fungi were detected, including the phytopathogenic fungus D. anthuriicola that was abundant, in the relatively young Soto Lake on Deception Island. The lake sediments studied contained the DNA of rich, diverse and complex fungal communities, including both fungi commonly reported in Antarctica and other taxa considered to be rare. However, as the study was based on the use of environmental DNA, which does not unequivocally confirm the presence of active or viable organisms, further studies using other approaches such as shotgun sequencing are required to elucidate the ecology of fungi in these Antarctic lake sediments.