bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ultraviolet optical horn antennas for label-free detection of single proteins
Authors: Barulin Aleksandr , Roy Prithu , Claude Jean-Benoît , Wenger Jérôme 
Published: April 2022

AbstractSingle-molecule fluorescence techniques have revolutionized our ability to study proteins. However, the presence of a fluorescent label can alter the protein structure and/or modify its reaction with other species. To avoid the need for a fluorescent label, the intrinsic autofluorescence of proteins in the ultraviolet offers the benefits of fluorescence techniques without introducing the labelling drawbacks. Unfortunately, the low autofluorescence brightness of proteins has greatly challenged single molecule detection so far. Here we introduce optical horn antennas, a dedicated nanophotonic platform enabling the label-free detection of single proteins in the UV. This design combines fluorescence plasmonic enhancement, efficient collection up to 85° angle and background screening. We detect the UV autofluorescence from immobilized and diffusing single proteins, and monitor protein unfolding and dissociation upon denaturation. Optical horn antennas open up a unique and promising form of fluorescence spectroscopy to investigate single proteins in their native states in real time.
Symmetry of magnetic correlations in spin-triplet superconductor UTe2
Authors: Butch Nicholas P. , Ran Sheng , Saha Shanta R. , Neves Paul M. , Zic Mark P. , Paglione Johnpierre , Gladchenko Sergiy , Ye Qiang , Rodriguez-Rivera Jose A. 
Published: April 2022

AbstractThe temperature dependence of the low-energy magnetic excitations in the spin-triplet superconductor UTe2 was measured via inelastic neutron scattering in the normal and superconducting states. These excitations have a peak instensity at 4 meV, follow the Brillouin zone edges near the crystallographic b-axis, obey the paramagnetic structural symmetry, and track the temperature evolution of the heavy fermion bulk magnetic susceptibility. Thus, the imaginary part of the dynamic susceptibility follows the behavior of interband correlations in a hybridized Kondo lattice with an appropriate characteristic energy. These excitations are a lower-dimensional analog of phenomena observed in other Kondo lattice materials, such that their presence is not necessarily due to dominance of ferromagnetic or antiferromagnetic correlations. The onset of superconductivity alters the magnetic excitations noticeably on the same energy scales, suggesting that these changes originate from additional electronic structure modification.
CAR T cells expressing a bacterial virulence factor trigger potent bystander antitumour responses in solid cancers
Authors: Jin Chuan , Ma Jing , Ramachandran Mohanraj , Yu Di , Essand Magnus 
Published: April 2022

AbstractChimeric antigen receptor T cells (CAR T cells) are effective against haematologic malignancies. However, in solid tumours, their potency is hampered by local immunosuppression and by the heterogeneous expression of the antigen that the CAR targets. Here we show that CAR T cells expressing a pluripotent pro-inflammatory neutrophil-activating protein (NAP) from Helicobacter pylori trigger endogenous bystander T-cell responses against solid cancers. In mice with subcutaneous murine pancreatic ductal adenocarcinomas, neuroblastomas or colon carcinomas, CAR(NAP) T cells led to slower tumour growth and higher survival rates than conventional mouse CAR T cells, regardless of target antigen, tumour type and host haplotype. In tumours with heterogeneous antigen expression, NAP secretion induced the formation of an immunologically ‘hot’ microenvironment that supported dendritic cell maturation and bystander responses, as indicated by epitope spreading and infiltration of cytotoxic CD8+ T cells targeting tumour-associated antigens other than the CAR-targeted antigen. CAR T cells armed with NAP neither increased off-tumour toxicity nor hampered the efficacy of CAR T cells, and hence may have advantageous translational potential.
CRISPR-free base editors with enhanced activity and expanded targeting scope in mitochondrial and nuclear DNA
Authors: Mok Beverly Y. , Kotrys Anna V. , Raguram Aditya , Huang Tony P. , Mootha Vamsi K. , Liu David R. 
Published: April 2022

AbstractThe all-protein cytosine base editor DdCBE uses TALE proteins and a double-stranded DNA-specific cytidine deaminase (DddA) to mediate targeted C•G-to-T•A editing. To improve editing efficiency and overcome the strict TC sequence-context constraint of DddA, we used phage-assisted non-continuous and continuous evolution to evolve DddA variants with improved activity and expanded targeting scope. Compared to canonical DdCBEs, base editors with evolved DddA6 improved mitochondrial DNA (mtDNA) editing efficiencies at TC by 3.3-fold on average. DdCBEs containing evolved DddA11 offered a broadened HC (H = A, C or T) sequence compatibility for both mitochondrial and nuclear base editing, increasing average editing efficiencies at AC and CC targets from less than 10% for canonical DdCBE to 15–30% and up to 50% in cell populations sorted to express both halves of DdCBE. We used these evolved DdCBEs to efficiently install disease-associated mtDNA mutations in human cells at non-TC target sites. DddA6 and DddA11 substantially increase the effectiveness and applicability of all-protein base editing.
Proteome metabolome and transcriptome data for three Symbiodiniaceae under ambient and heat stress conditions
Authors: Camp Emma F. , Kahlke Tim , Signal Brandon , Oakley Clinton A. , Lutz Adrian , Davy Simon K. , Suggett David J. , Leggat William P. 
Published: April 2022

AbstractThe Symbiodiniaceae are a taxonomically and functionally diverse family of marine dinoflagellates. Their symbiotic relationship with invertebrates such as scleractinian corals has made them the focus of decades of research to resolve the underlying biology regulating their sensitivity to stressors, particularly thermal stress. Research to-date suggests that Symbiodiniaceae stress sensitivity is governed by a complex interplay between phylogenetic dependent and independent traits (diversity of characteristics of a species). Consequently, there is a need for datasets that simultaneously broadly resolve molecular and physiological processes under stressed and non-stressed conditions. Therefore, we provide a dataset simultaneously generating transcriptome, metabolome, and proteome data for three ecologically important Symbiodiniaceae isolates under nutrient replete growth conditions and two temperature treatments (ca. 26 °C and 32 °C). Elevated sea surface temperature is primarily responsible for coral bleaching events that occur when the coral-Symbiodiniaceae relationship has been disrupted. Symbiodiniaceae can strongly influence their host’s response to thermal stress and consequently it is necessary to resolve drivers of Symbiodiniaceae heat stress tolerance. We anticipate these datasets to expand our understanding on the key genotypic and functional properties that influence the sensitivities of Symbiodiniaceae to thermal stress.
Capturing water vapors from atmospheric air using superporous gels
Authors: Mittal Hemant , Al Alili Ali , Alhassan Saeed M. 
Published: April 2022

AbstractDehumidification performance of most polymer desiccant materials is unsatisfactory because of the complex adsorption mechanism on polymer surface and non-porous structure. A viable alternative of solid desiccants, especially existing polymer desiccants, for capturing water vapors from moist air is the super-porous gels (SPGs). The presence of interconnected channels of pores in its structure facilitates the transfer of water molecules to the internal structure of SPGs. Therefore, in this research work, we are proposingN-isopropylacrylamide (NIPAM) and acrylamide (AM) based thermoresponsive SPGs as a potential alternative to the existing conventional solid desiccants. To ensure the formation of interconnected capillary channels, the SPGs were synthesized via gas blowing and foaming technique. Surface morphology of the SPGs was studied using scanning electron microscopy (SEM) and the other physio-chemical characteristics were studied using different techniques like fourier Transform Infrared Spectroscopy (FTIR), X-ray diffraction (XRD) and thermo-gravimetric analysis (TGA). Water vapors adsorption properties of the SPGs were explored via adsorption isotherm and kinetics. The adsorption isotherm was found to be of type-III isotherm with a maximum adsorption capacity of 0.75 gw/gadsat 25 °C and 90% relative humidity. Experimental isotherm data correlated well with BET, FHH and GAB isotherm models. Adsorption kinetics suggested that the water vapors diffusion followed intraparticle diffusion and liquid field driving mechanisms collectively. SPGs exhibited very good regeneration and reusability for ten continuous adsorption/desorption cycles. Therefore, the dehumidification efficiency of synthesized SPGs shows that they have potential to replace most of the conventional solid desiccant materials in use.
Characterisation and natural progression of SARS-CoV-2 infection in ferrets
Authors: Au Gough G. , Marsh Glenn A. , McAuley Alexander J. , Lowther Suzanne , Trinidad Lee , Edwards Sarah , Todd Shawn , Barr Jennifer , Bruce Matthew P. , Poole Timothy B. , Brown Sheree , Layton Rachel , Riddell Sarah , Rowe Brenton , Soldani Elisha , Suen Willy W. , Bergfeld Jemma , Bingham John , Payne Jean , Durr Peter A. , Drew Trevor W. , Vasan Seshadri S. 
Published: April 2022

AbstractSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is responsible for the infectious disease COVID-19, which has rapidly become an international pandemic with significant impact on healthcare systems and the global economy. To assist antiviral therapy and vaccine development efforts, we performed a natural history/time course study of SARS-CoV-2 infection in ferrets to characterise and assess the suitability of this animal model. Ten ferrets of each sex were challenged intranasally with 4.64 × 104 TCID50 of SARS-CoV-2 isolate Australia/VIC01/2020 and monitored for clinical disease signs, viral shedding, and tissues collected post-mortem for histopathological and virological assessment at set intervals. We found that SARS-CoV-2 replicated in the upper respiratory tract of ferrets with consistent viral shedding in nasal wash samples and oral swab samples up until day 9. Infectious SARS-CoV-2 was recovered from nasal washes, oral swabs, nasal turbinates, pharynx, and olfactory bulb samples within 3–7 days post-challenge; however, only viral RNA was detected by qRT-PCR in samples collected from the trachea, lung, and parts of the gastrointestinal tract. Viral antigen was seen exclusively in nasal epithelium and associated sloughed cells and draining lymph nodes upon immunohistochemical staining. Due to the absence of clinical signs after viral challenge, our ferret model is appropriate for studying asymptomatic SARS-CoV-2 infections and most suitable for use in vaccine efficacy studies.
Applicability of the linearized Poisson–Boltzmann theory to contact angle problems and application to the carbon dioxide–brine–solid systems
Authors: Amadu Mumuni , Miadonye Adango 
Published: April 2022

AbstractIn colloidal science and bioelectrostatics, the linear Poisson Boltzmann equation (LPBE) has been used extensively for the calculation of potential and surface charge density. Its fundamental assumption rests on the premises of low surface potential. In the geological sequestration of carbon dioxide in saline aquifers, very low pH conditions coupled with adsorption induced reduction of surface charge density result in low pH conditions that fit into the LPB theory. In this work, the Gouy–Chapman model of the electrical double layer has been employed in addition to the LPBE theory to develop a contact angle model that is a second-degree polynomial in pH. Our model contains the point of zero charge pH of solid surface. To render the model applicable to heterogeneous surfaces, we have further developed a model for the effective value of the point of zero charge pH. The point of zero charge pH model when integrated into our model enabled us to determine the point of zero charge pH of sandstone, quartz and mica using literature based experimental data. In this regard, a literature based thermodynamic model was used to calculate carbon dioxide solubility and pH of aqueous solution. Values of point of zero charge pH determined in this paper agree with reported ones. The novelty of our work stems from the fact that we have used the LPB theory in the context of interfacial science completely different from the classical approach, where the focus is on interparticle electrostatics involving colloidal stabilization.
Impact of weather changes on hospital admissions for hypertension
Authors: Bauer Frederic , Lindtke Janine , Seibert Felix , Rohn Benjamin , Doevelaar Adrian , Babel Nina , Schlattmann Peter , Bertram Sebastian , Zgoura Panagiota , Westhoff Timm H. 
Published: April 2022

AbstractBlood pressure (BP) shows a seasonal variation with higher levels at lower temperatures. Many hypertensives, however, report on BP disturbances rather in association with acutely changing weather conditions than with absolute temperatures. To date, the impact of changing meteorological parameters on hypertensive episodes remains elusive. We performed a retrospective time series regression analysis on 203,703 patients in three hospitals in Germany between 2010 and 2018, of whom 7362 patients were admitted for hypertensive disease. Numbers of daily admissions for hypertension were associated with metereological data obtained from three nearby weather stations. Data comprised temperature (mean, maximal, minimal and range within 24 h), athmospheric pressure, and precipitation. Changes of these parameters were calculated over a two and three day period. There was an inverse correlation between maximal daily temperature and the number of admissions for hypertensive disease, which remained significant both after adjustment for seasonality and week day in a spline model and in a constrained distributed lag model. A decrease of maximal temperature by 5 °C was associated with a 3% increase of risk for admission for hypertension and vice versa. There were no significant effects of precipitation and athmospheric pressure on the number of admissions. With regard to all observed metereological parameters, neither the change within two, nor within three days was consistently associated with the number of daily admissions. High temperatures are associated with lower numbers of hypertensive episodes requiring hospital admission. In contrast to the subjective perception of many hypertensive patients, however, acutely changing weather conditions are not associated with a higher risk of hypertensive emergency.
Symptoms of depression change with olfactory function
Authors: Sabiniewicz Agnieszka , Hoffmann Leonie , Haehner Antje , Hummel Thomas 
Published: April 2022

AbstractOlfactory loss is associated with symptoms of depression. The present study, conducted on a large cohort of mostly dysosmic patients, aimed to investigate whether improvement in olfactory performance would correspond with a decrease in depression severity. In 171 participants (157 dysosmic), we assessed olfactory function and severity of depression before and after an average interval of 11 months, with many patients showing improvement in olfactory function. Separate analyses were conducted for (a) the whole group of patients and (b) the group of dysosmic patients using both classic and Bayesian approaches. For odor identification, Student t test demonstrated that the whole sample improved consistently, especially within the group of dysosmic patients. The dysosmic group also improved in odor threshold and overall olfactory function. Pearson correlation showed that an increase in olfactory function was associated with a decrease in depression severity, particularly in dysosmic patients. To conclude, the present results indicate that symptoms of depression change with olfactory function in general and odor identification in particular.
National trends in ideal cardiovascular health among adults in Bhutan from three cross-sectional surveys in 2007, 2014, and 2019
Authors: Pengpid Supa , Peltzer Karl 
Published: April 2022

AbstractThe study aimed to estimate the prevalence, distribution, and correlates of ideal cardiovascular health (CVH) among individuals (20–69 years) across three cross-sectional surveys in 2007, 2014 and 2019 in Bhutan. Cross-sectional data were analysed from 9712 individuals (20–69 years, mean age = 37.6 years) who participated in the 2007, 2014 or 2019 Bhutan STEPS surveys, had complete measurement of CVH metrics, and had no history of a cardiovascular disease in 2014 and 2019. Ideal CVH measures included non-smoking, healthy diet, physical activity, body mass index (< 23 kg/m2), blood pressure < 120/ < 80 mmHg, total cholesterol < 200 mg/dL, and fasting blood glucose < 100 mg/dL). The prevalence of five to seven ideal CVH metrics increased from 11.6% in 2007 to 37.9% in 2019. Trend analyses showed that ideal physical activity, ideal total cholesterol, ideal blood pressure, and ideal fasting glucose increased from 2007 to 2019, while ideal fruit and vegetable intake, ideal smoking, and ideal body mass index decreased from 2007 to 2019. Five to seven ideal CVH metrics, 0–7 ideal CVH metrics, and 0–14 poor, intermediate, and ideal CVH metrics increased from 2007 to 2019. In the adjusted logistic regression analysis, older age decreased the odds of having 5–7 ideal CVH metrics in all three study years. Male sex increased the odds, and employment decreased the odds of 5–7 ideal CVH metrics in 2007, and urban residence increased the odds of 5–7 ideal CVH metrics in 2014 and decreased the odds in 2019. The proportion of meeting 5–7 ideal CVH metrics increased in Bhutan. Primary and secondary prevention programmes must be strengthened to improve CVH in Bhutan, considering identified associated factors.
Adsorptive colorimetric determination of chromium(VI) ions at ultratrace levels using amine functionalized mesoporous silica
Authors: Ghosh Rajesh , Gopalakrishnan Saranya , Renganathan T. , Pushpavanam S. 
Published: April 2022

AbstractThere is an urgent need for a rapid, affordable and sensitive analytical method for periodic monitoring of heavy metals in water bodies. Herein, we report for the first time a versatile method for ultratrace level metal detection based on colorimetric sensing. The method integrates preconcentration using a nanomaterial with a colorimetric assay performed directly on the metal-enriched nanomaterial surface. This method circumvents the need for tedious sample pre-processing steps and the complex development of colorimetric probes, thereby reducing the complexity of the analytical procedure. The efficacy of the proposed method was demonstrated for chromium(VI) ions detection in water samples. Amine functionalized mesoporous silica (AMS) obtained from a one-pot synthesis was utilized as a pre-concentration material. The structural and chemical analysis of AMS was conducted to confirm its physico-chemical properties. The pre-concentration conditions were optimized to maximise the colorimetric signal. AMS exhibited a discernible colour change from white to purple (visible to the naked eye) for trace Cr(VI) ions concentration as low as 0.5 μg L−1. This method shows high selectivity for Cr(VI) ions with no colorimetric signal from other metal ions. We believe our method of analysis has a high scope for de-centralized monitoring of organic/inorganic pollutants in resource-constrained settings.
Intestinal bacteria flora changes in patients with Mycoplasma pneumoniae pneumonia with or without wheezing
Authors: Jiang Yonghong , Bao Chunxiu , Zhao Xiaoyang , Chen Yiliu , Song Yao , Xiao Zhen 
Published: April 2022

AbstractMycoplasma pneumoniae (MP) infection is a common cause of community-acquired pneumonia in children. Furthermore, many children with Mycoplasma pneumoniae pneumonia (MPP) have recurrent wheezing and reduced small airway function after their clinical symptoms have resolved, eventually leading to asthma. MPP can trigger immune disorders and systemic inflammatory responses. Hence, the intestine is the largest immune organ of the body. Therefore, we sought to investigate whether the alteration of intestinal flora is correlated with the development of wheezing in children with MPP. We collected 30 healthy children as group A, 50 children with nonwheezing MPP as group B, and 50 children with wheezing MPP as group C. We found that the percentage of eosinophil cells (EC) was significantly higher in group C than that in group B for routine blood tests and serum inflammatory factors. The serum cytokines, including IL-4, IL-17, TNF-α, and TGF-β, were significantly higher in group C than in group B. In addition, the level of IL-10 was significantly lower in group C than in group B. The distribution characteristics of intestinal flora strains in children with MPP were detected by sequencing of 16S rRNA gene amplicon sequencing. There were differences in the abundance of intestinal flora between children with MPP and healthy children, with lower abundance of Ruminococcus flavefaciens, Clostridium butyricum, Lactobacillus, and Bifidobacterium in the intestine of children with MPP compared to healthy children. The abundance of Ruminococcus flavefaciens and Clostridium butyricum was significantly lower in the intestine of children with wheezing MPP compared to children without wheezing MPP. In the correlation analysis between children with MPP and inflammatory factors, Ruminococcus flavefaciens was found to be negatively correlated with IL-17. Clostridium butyricum was negatively correlated with L-4, IL-17, TNF-α, and TGF-β; however, it positively correlated with IL-10. Thus, it was concluded that alterations in intestinal flora play a crucial role in the immune response to MPP, where a significant decline in intestinal Ruminococcus flavefaciens and Clostridium butyricum leads to an exacerbation of the inflammatory responses, which may promote the development of children with wheezing MPP.
Impact of the biopsy forceps size on histological analysis and performances of the histological scoring systems
Authors: Bianchi Elettra , Najm Aurélie , Vanbelle Sophie , Le Goff Benoit , Mutijima Eugène , Kaiser Marie-Joëlle , Malaise Michel , Hauzeur Jean-Philippe 
Published: April 2022

AbstractTo improve the reliability of the quantitative scorings of the synovial biopsies, we evaluate whether diameter of arthroscopic forceps influences histological quality of synovial tissue and/or histological scores and we compare the intra- and inter-observer performances of the main histological scoring systems. Synovial biopsies were retrieved in the same part of the joint using 1, 2 and 4 mm diameters grasping forceps. After standard staining and immunohistochemistry with anti-CD68 antibody, slides were scored blindly by 2 independent experienced operators for tissue quality and with Krenn score, de Bois-Tak score and CD68 semi-quantitative score. Four samples did not pass quality control. No difference other than a higher number of vessels in the 4 mm versus 2 mm forceps (p = 0.01) was found among the 3 groups. CD68 score was significantly higher in the 2 versus 4 mm forceps (p = 0.009). So we concluded that only vessels quantification and CD68 semi-quantitative score seemed affected by the forceps size. The intra-reader agreement was variable across observers and features: 0.78 (0.66–0.87) for the Krenn scoring system, 0.89 (0.78–0.97) for the de Bois-Tak score and 0.93 (0.81–1.00) for the CD68 score. Interobserver reliabilities of Krenn score, de Bois-Tak score and CD68 scores were satisfactory: 0.95 (0.92–0.99) for Krenn, 0.98 (0.96–0.99) for de Bois-Tak and 0.80 (0.71–0.89) for CD68.