bluuebunny/crossref_metadata_2025_split huggingface dataset:
Environmentally azithromycin pharmaceutical wastewater management and synergetic biocompatible approaches of loaded azithromycin@hematite nanoparticles
Authors: Al-Hakkani Mostafa F. , Gouda Gamal A. , Hassan Sedky H. A. , Mohamed Mahmoud M. A. , Nagiub Adham M. 
Published: June 2022

AbstractPharmaceutical wastewater contamination via azithromycin antibiotic and the continuous emergence of some strains of bacteria, cancer, and the Covid-19 virus. Azithromycin wastewater treatment using the biosynthesized Hematite nanoparticles (α-HNPs) and the biocompatible activities of the resulted nanosystem were reported. Biofabrication of α-HNPs using Echinaceapurpurea liquid extract as a previously reported approach was implemented. An evaluation of the adsorption technique via the biofabricated α-HNPs for the removal of the Azr drug contaminant from the pharmaceutical wastewater was conducted. Adsorption isotherm, kinetics, and thermodynamic parameters of the Azr on the α-HNPs surface have been investigated as a batch mode of equilibrium experiments. Antibacterial, anticancer, and antiviral activities were conducted as Azr@α-HNPs. The optimum conditions for the adsorption study were conducted as solution pH = 10, 150 mg dose of α-HNPs, and Azr concentration 400 mg/L at 293 K. The most fitted isothermal model was described according to the Langmuir model at adsorption capacity 114.05 mg/g in a pseudo-second-order kinetic mechanistic at R2 0.9999. Thermodynamic study manifested that the adsorption behavior is a spontaneous endothermic chemisorption process. Subsequently, studying the biocompatible applications of the Azr@α-HNPs. Azr@α-HNPs antibacterial activity revealed a synergistic effect in the case of Gram-positive more than Gram-negative bacteria. IC50 of Azr@α-HNPs cytotoxicity against MCF7, HepG2, and HCT116 cell lines was investigated and it was found to be 78.1, 81.7, and 93.4 µg/mL respectively. As the first investigation of the antiviral use of Azr@α-HNPs against SARS-CoV-2, it was achieved a safety therapeutic index equal to 25.4 revealing a promising antiviral activity. An admirable impact of the use of the biosynthesized α-HNPs and its removal nanosystem product Azr@α-HNPs was manifested and it may be used soon as a platform of the drug delivery nanosystem for the biomedical applications.
Decomposing biophotovoltaic current density profiles using the Hilbert–Huang transform reveals influences of circadian clock on cyanobacteria exoelectrogenesis
Authors: Okedi Tonny , Yunus Kamran , Fisher Adrian 
Published: June 2022

AbstractElectrons from cyanobacteria photosynthetic and respiratory systems are implicated in current generated in biophotovoltaic (BPV) devices. However, the pathway that electrons follow to electrodes remains largely unknown, limiting progress of applied research. Here we use Hilbert–Huang Transforms to decompose Synechococcus elongatus sp. PCC7942 BPV current density profiles into physically meaningful oscillatory components, and compute their instantaneous frequencies. We develop hypotheses for the genesis of the oscillations via repeat experiments with iron-depleted and 20% CO$${_2}$$

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enriched biofilms. The oscillations exhibit rhythms that are consistent with the state of the art cyanobacteria circadian model, and putative exoelectrogenic pathways. In particular, we observe oscillations consistent with: rhythmic D1:1 (photosystem II core) expression; circadian-controlled glycogen accumulation; circadian phase shifts under modified intracellular %ATP; and circadian period shortening in the absence of the iron-sulphur protein LdpA. We suggest that the extracted oscillations may be used to reverse-identify proteins and/or metabolites responsible for cyanobacteria exoelectrogenesis.
A hybrid explicit implicit staggered grid finite-difference scheme for the first-order acoustic wave equation modeling
Authors: Liang Wenquan , Wang Yanfei , Cao Jingjie , Iturrarán-Viveros Ursula 
Published: June 2022

AbstractImplicit staggered-grid finite-difference (SGFD) methods are widely used for the first-order acoustic wave-equation modeling. The identical implicit SGFD operator is commonly used for all of the first-order spatial derivatives in the first-order acoustic wave-equation. In this paper, we propose a hybrid explicit implicit SGFD (HEI-SGFD) scheme which could simultaneously preserve the wave-equation simulation accuracy and increase the wave-equation simulation speed. We use a second-order explicit SGFD operator for half of the first-order spatial derivatives in the first-order acoustic wave-equation. At the same time, we use the implicit SGFD operator with added points in the diagonal direction for the other first-order spatial derivatives in the first-order acoustic wave-equation. The proposed HEI-SGFD scheme nearly doubles the wave-equation simulation speed compared to the implicit SGFD schemes. In essence, the proposed HEI-SGFD scheme is equivalent to the second-order FD scheme with ordinary grid format. We then determine the HEI-SGFD coefficients in the time–space domain by minimizing the phase velocity error using the least-squares method. Finally, the effectiveness of the proposed method is demonstrated by dispersion analysis and numerical simulations.
Niche partitioning between planktivorous fish in the pelagic Baltic Sea assessed by DNA metabarcoding, qPCR and microscopy
Authors: Novotny Andreas , Jan Kinlan Mehdi Goulwen , Dierking Jan , Winder Monika 
Published: June 2022

AbstractMarine communities undergo rapid changes related to human-induced ecosystem pressures. The Baltic Sea pelagic food web has experienced several regime shifts during the past century, resulting in a system where competition between the dominant planktivorous mesopredatory clupeid fish species herring (Clupea harengus) and sprat (Sprattus sprattus) and the rapidly increasing stickleback (Gasterosteus aculeatus) population is assumed to be high. Here, we investigate diet overlap between these three planktivorous fishes in the Baltic Sea, utilizing DNA metabarcoding on the 18S rRNA gene and the COI gene, targeted qPCR, and microscopy. Our results show niche differentiation between clupeids and stickleback, and highlight that rotifers play an important role in this pattern, as a resource that is not being used by the clupeids nor by other zooplankton in spring. We further show that all the diet assessment methods used in this study are consistent, but also that DNA metabarcoding describes the plankton-fish link at the highest taxonomic resolution. This study suggests that rotifers and other understudied soft-bodied prey may have an important function in the pelagic food web and that the growing population of pelagic stickleback may be supported by the open feeding niche offered by the rotifers.
Vaccination against connective tissue growth factor attenuates the development of renal fibrosis
Authors: Nakayama Takashin , Azegami Tatsuhiko , Hayashi Kaori , Hishikawa Akihito , Yoshimoto Norifumi , Nakamichi Ran , Sugita Erina , Itoh Hiroshi 
Published: June 2022

AbstractThere is a critical need for efficient treatment of chronic kidney disease (CKD). Renal fibrosis is a final common pathway to end-stage renal disease independent of the underlying etiology, and connective tissue growth factor (CTGF) is a well-recognized profibrotic factor in fibrosis of various organ systems. Here, we developed a novel peptide vaccine against CTGF to attenuate the development of renal fibrosis. Three inoculations with this CTGF vaccine at 2-week intervals elicited antibodies specifically binding to human full-length CTGF, and the antigen-specific serum IgG antibody titers were maintained for > 30 weeks. The efficacy of the CTGF vaccine on renal fibrosis was evaluated in adenine-induced CKD and unilateral ureteral obstruction (UUO) murine models. In adenine-induced CKD model, immunization with the CTGF vaccine attenuated renal interstitial fibrosis. Vaccinated mice showed low levels of serum creatinine and urea nitrogen and low urine albumin–creatinine ratio compared with vehicle-treated mice. In UUO model, the CTGF vaccination also suppressed the onset of renal fibrosis. In an in vitro study, CTGF vaccine-elicited IgG antibodies efficiently suppressed CTGF-induced- and transforming growth factor-β-induced α-smooth muscle actin expression in kidney fibroblasts. These results demonstrate that the CTGF vaccine is a promising strategy to attenuate the development of renal fibrosis.
TCFL5 deficiency impairs the pachytene to diplotene transition during spermatogenesis in the mouse
Authors: Galán-Martínez Javier , Berenguer Inés , del Carmen Maza Mª , Stamatakis Konstantinos , Gironès Núria , Fresno Manuel 
Published: June 2022

AbstractSpermatogenesis is a complex, multistep process during which spermatogonia give rise to spermatozoa. Transcription Factor Like 5 (TCFL5) is a transcription factor that has been described expressed during spermatogenesis. In order to decipher the role of TCFL5 during in vivo spermatogenesis, we generated two mouse models. Ubiquitous removal of TCFL5 generated by breeding TCFL5fl/flwith SOX2-Cre mice resulted in sterile males being unable to produce spermatozoa due to a dramatic alteration of the testis architecture presenting meiosis arrest and lack of spermatids. SYCP3, SYCP1 and H1T expression analysis showed that TCFL5 deficiency causes alterations during pachytene/diplotene transition resulting in a meiotic arrest in a diplotene-like stage. Even more, TCFL5 deficient pachytene showed alterations in the number of MLH1 foci and the condensation of the sexual body. In addition, tamoxifen-inducible TCFL5 knockout mice showed, besides meiosis phenotype, alterations in the spermatids elongation process resulting in aberrant spermatids. Furthermore, TCFL5 deficiency increased spermatogonia maintenance genes (Dalz, Sox2, and Dmrt1) but also increased meiosis genes (Syce1, Stag3, and Morc2a) suggesting that the synaptonemal complex forms well, but cannot separate and meiosis does not proceed. TCFL5 is able to bind to the promoter ofSyce1, Stag3, Dmrt1, andSyce1suggesting a direct control of their expression. In conclusion, TCFL5 plays an essential role in spermatogenesis progression being indispensable for meiosis resolution and spermatids maturation.
Development of a UPLC-MRM-based targeted proteomic method to profile subcellular organelle marker proteins from human liver tissues
Authors: Qiu Xiazi , Doyle Laura M. , Wang Michael Zhuo 
Published: June 2022

AbstractSubcellular organelles have long been an interest in biochemical research and drug development as the isolation of those organelles can help to probe protein functions and elucidate drug disposition within the cell. Usually, the purity of isolated subcellular organelle fractions was determined using immunoblot analysis of subcellular organelle marker proteins, which can be labor-intensive and lack reproducibility due to antibody batch-to-batch variability. As such, a higher throughput and more robust method is needed. Here, a UPLC-MRM-based targeted proteomic method was developed for a panel of human organelle marker proteins and used to profile a series of sucrose fractions isolated from the protein extract of human liver tissues. The method was validated by comparing to the traditional immunoblot and determining subcellular localization of three case study proteins (CYP3A4, FcRn, and β2M) pertaining to the disposition of small molecule and biologic drugs. All three case study proteins were co-enriched with their corresponding subcellular protein marker, and complete recoveries were achieved from isolated fractions. This newly developed MRM method for the panel of human organelle marker proteins can potentially accelerate future intracellular drug disposition analysis and facilitate subcellular organelle quality assessment.
The importance of self-efficacy and negative affect for neurofeedback success for central neuropathic pain after a spinal cord injury
Authors: Anil Krithika , Demain Sara , Burridge Jane , Simpson David , Taylor Julian , Cotter Imogen , Vuckovic Aleksandra 
Published: June 2022

AbstractEEG-based neurofeedback uses mental behaviours (MB) to enable voluntary self-modulation of brain activity, and has potential to relieve central neuropathic pain (CNP) after a spinal cord injury (SCI). This study aimed to understand neurofeedback learning and the relationship between MB and neurofeedback success. Twenty-five non-CNP participants and ten CNP participants received neurofeedback training (reinforcing 9–12 Hz; suppressing 4–8 Hz and 20–30 Hz) on four visits. Participants were interviewed about the MB they used after each visit. Questionnaires examined the following factors: self-efficacy, locus of control, motivation, and workload of neurofeedback. MB were grouped into mental strategies (a goal-directed mental action) and affect (emotional experience during neurofeedback). Successful non-CNP participants significantly used more imagination-related MS and reported more negative affect compared to successful CNP participants. However, no mental strategy was clearly associated with neurofeedback success. There was some association between the lack of success and negative affect. Self-efficacy was moderately correlated with neurofeedback success (r = < 0.587, p = < 0.020), whereas locus of control, motivation, and workload had low, non-significant correlations (r < 0.300, p > 0.05). Affect may be more important than mental strategies for a successful neurofeedback performance. Self-efficacy was associated with neurofeedback success, suggesting that increasing confidence in one’s neurofeedback abilities may improve neurofeedback performance.
Analysis of the physiological load on lumbar vertebrae in patients with osteoporosis: a finite-element study
Authors: Kang Sungwook , Park Chan-Hee , Jung Hyunwoo , Lee Subum , Min Yu-Sun , Kim Chul-Hyun , Cho Mingoo , Jung Gu-Hee , Kim Dong-Hee , Kim Kyoung-Tae , Hwang Jong-Moon 
Published: June 2022

AbstractThis study aims to investigate the difference in physiological loading on the spine in three different motions (flexion–extension, lateral bending, and axial rotation) between osteoporotic and normal spines, using finite element modelling. A three-dimensional finite element (FE) model centered on the lumbar spine was constructed. We applied two different material properties of osteoporotic and normal spines. For the FE analysis, three loading conditions (flexion–extension, lateral bending, and axial rotation) were applied. The von Mises stress was higher on the nucleus pulposus at all vertebral levels in all movements, in the osteoporosis group than in the normal group. On the annulus fibrosus, the von Mises stress increased at the level of L3–L4, L4–L5, and L5–S in the flexion–extension group and at L4–L5 and L5–S levels in the lateral bending group. The values of two motions, flexion–extension and lateral bending, increased in the L4 and L5 cortical bones. In axial rotation, the von Mises stress increased at the level of L5 of cortical bone. Additionally, the von Mises stress increased in the lower endplate of L5–S and L4–L5 in all movements, especially lateral bending. Even in the group with no increase, there was a part that received increased von Mises stress locally for each element in the three-dimensional reconstructed view of the pressure distribution in color. The von Mises stress on the lumbar region in the three loading conditions, was greater in most components of osteoporotic vertebrae than in normal vertebrae and the value was highest in the nucleus pulposus. Considering the increase in the measured von Mises stress and the local increase in the pressure distribution, we believe that these results can contribute to explaining discogenic pain and degeneration.
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients
Authors: Zhang Harrison G. , Dagliati Arianna , Shakeri Hossein Abad Zahra , Xiong Xin , Bonzel Clara-Lea , Xia Zongqi , Tan Bryce W. Q. , Avillach Paul , Brat Gabriel A. , Hong Chuan , Morris Michele , Visweswaran Shyam , Patel Lav P. , Gutiérrez-Sacristán Alba , Hanauer David A. , Holmes John H. , Samayamuthu Malarkodi Jebathilagam , Bourgeois Florence T. , L’Yi Sehi , Maidlow Sarah E. , Moal Bertrand , Murphy Shawn N. , Strasser Zachary H. , Neuraz Antoine , Ngiam Kee Yuan , Loh Ne Hooi Will , Omenn Gilbert S. , Prunotto Andrea , Dalvin Lauren A. , Klann Jeffrey G. , Schubert Petra , Vidorreta Fernando J. Sanz , Benoit Vincent , Verdy Guillaume , Kavuluru Ramakanth , Estiri Hossein , Luo Yuan , Malovini Alberto , Tibollo Valentina , Bellazzi Riccardo , Cho Kelly , Ho Yuk-Lam , Tan Amelia L. M. , Tan Byorn W. L. , Gehlenborg Nils , Lozano-Zahonero Sara , Jouhet Vianney , Chiovato Luca , Aronow Bruce J. , Toh Emma M. S. , Wong Wei Gen Scott , Pizzimenti Sara , Wagholikar Kavishwar B. , Bucalo Mauro ,   The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Cai Tianxi , South Andrew M. , Kohane Isaac S. , Weber Griffin M. 
Published: June 2022

AbstractThe risk profiles of post-acute sequelae of COVID-19 (PASC) have not been well characterized in multi-national settings with appropriate controls. We leveraged electronic health record (EHR) data from 277 international hospitals representing 414,602 patients with COVID-19, 2.3 million control patients without COVID-19 in the inpatient and outpatient settings, and over 221 million diagnosis codes to systematically identify new-onset conditions enriched among patients with COVID-19 during the post-acute period. Compared to inpatient controls, inpatient COVID-19 cases were at significant risk for angina pectoris (RR 1.30, 95% CI 1.09–1.55), heart failure (RR 1.22, 95% CI 1.10–1.35), cognitive dysfunctions (RR 1.18, 95% CI 1.07–1.31), and fatigue (RR 1.18, 95% CI 1.07–1.30). Relative to outpatient controls, outpatient COVID-19 cases were at risk for pulmonary embolism (RR 2.10, 95% CI 1.58–2.76), venous embolism (RR 1.34, 95% CI 1.17–1.54), atrial fibrillation (RR 1.30, 95% CI 1.13–1.50), type 2 diabetes (RR 1.26, 95% CI 1.16–1.36) and vitamin D deficiency (RR 1.19, 95% CI 1.09–1.30). Outpatient COVID-19 cases were also at risk for loss of smell and taste (RR 2.42, 95% CI 1.90–3.06), inflammatory neuropathy (RR 1.66, 95% CI 1.21–2.27), and cognitive dysfunction (RR 1.18, 95% CI 1.04–1.33). The incidence of post-acute cardiovascular and pulmonary conditions decreased across time among inpatient cases while the incidence of cardiovascular, digestive, and metabolic conditions increased among outpatient cases. Our study, based on a federated international network, systematically identified robust conditions associated with PASC compared to control groups, underscoring the multifaceted cardiovascular and neurological phenotype profiles of PASC.
Engineering bioactive nanoparticles to rejuvenate vascular progenitor cells
Authors: Bui Loan , Edwards Shanique , Hall Eva , Alderfer Laura , Round Kellen , Owen Madeline , Sainaghi Pietro , Zhang Siyuan , Nallathamby Prakash D. , Haneline Laura S. , Hanjaya-Putra Donny 
Published: June 2022

AbstractFetal exposure to gestational diabetes mellitus (GDM) predisposes children to future health complications including type-2 diabetes mellitus, hypertension, and cardiovascular disease. A key mechanism by which these complications occur is through stress-induced dysfunction of endothelial progenitor cells (EPCs), including endothelial colony-forming cells (ECFCs). Although several approaches have been previously explored to restore endothelial function, their widespread adoption remains tampered by systemic side effects of adjuvant drugs and unintended immune response of gene therapies. Here, we report a strategy to rejuvenate circulating vascular progenitor cells by conjugation of drug-loaded liposomal nanoparticles directly to the surface of GDM-exposed ECFCs (GDM-ECFCs). Bioactive nanoparticles can be robustly conjugated to the surface of ECFCs without altering cell viability and key progenitor phenotypes. Moreover, controlled delivery of therapeutic drugs to GDM-ECFCs is able to normalize transgelin (TAGLN) expression and improve cell migration, which is a critical key step in establishing functional vascular networks. More importantly, sustained pseudo-autocrine stimulation with bioactive nanoparticles is able to improve in vitro and in vivo vasculogenesis of GDM-ECFCs. Collectively, these findings highlight a simple, yet promising strategy to rejuvenate GDM-ECFCs and improve their therapeutic potential. Promising results from this study warrant future investigations on the prospect of the proposed strategy to improve dysfunctional vascular progenitor cells in the context of other chronic diseases, which has broad implications for addressing various cardiovascular complications, as well as advancing tissue repair and regenerative medicine.
Edwardsiella tarda TraT is an anti-complement factor and a cellular infection promoter
Authors: Li Mofei , Wu Meng , Sun Yuanyuan , Sun Li 
Published: June 2022

AbstractEdwardsiella tardais a well-known bacterial pathogen with a broad range of host, including fish, amphibians, and mammals. One eminent virulence feature ofE. tardais its strong ability to resist the killing of host serum complement, but the involving mechanism is unclear. In this report, we identifiedE. tardaTraT as a key player in both complement resistance and cellular invasion. TraT, a surface-localized protein, bound and recruited complement factor H ontoE. tarda, whereby inhibiting complement activation via the alternative pathway. TraT also interacted with host CD46 in a specific complement control protein domain-dependent manner, whereby facilitating the cellular infection and tissue dissemination ofE. tarda. Thus, by acting as an anti-complement factor and a cellular infection promoter, TraT makes an important contribution to the complement evasion and systemic infection ofE. tarda. These results add insights into the pathogen-host interaction mechanism duringE. tardainfection.
Activated-memory T cells influence naïve T cell fate: a noncytotoxic function of human CD8 T cells
Authors: Sasaki Kazuki , Moussawy Mouhamad Al , Abou-Daya Khodor I. , Macedo Camila , Hosni-Ahmed Amira , Liu Silvia , Juya Mariam , Zahorchak Alan F. , Metes Diana M. , Thomson Angus W. , Lakkis Fadi G. , Abdelsamed Hossam A. 
Published: June 2022

AbstractT cells are endowed with the capacity to sense their environment including other T cells around them. They do so to set their numbers and activation thresholds. This form of regulation has been well-studied within a given T cell population – i.e., within the naïve or memory pool; however, less is known about the cross-talk between T cell subsets. Here, we tested whether memory T cells interact with and influence surrounding naïve T cells. We report that human naïve CD8 T cells (TN) undergo phenotypic and transcriptional changes in the presence of autologous activated-memory CD8 T cells (TMem). Following in vitro co-culture with activated central memory cells (TCM), ~3% of the TN acquired activation/memory canonical markers (CD45RO and CD95) in an MHC-I dependent-fashion. Using scRNA-seq, we also observed that ~3% of the TN acquired an activated/memory signature, while ~84% developed a unique activated transcriptional profile hybrid between naïve and activated memory. Pseudotime trajectory analysis provided further evidence that TN with an activated/memory or hybrid phenotype were derived from TN. Our data reveal a non-cytotoxic function of TMem with potential to activate autologous TN into the activated/memory pool. These findings may have implications for host-protection and autoimmunity that arises after vaccination, infection or transplantation.