bluuebunny/crossref_metadata_2025_split huggingface dataset:
Intersections between COVID-19 and socio-economic mental health stressors in the lives of South African adolescent girls and young women
Authors: Duby Zoe , Bunce Brittany , Fowler Chantal , Bergh Kate , Jonas Kim , Dietrich Janan Janine , Govindasamy Darshini , Kuo Caroline , Mathews Catherine 
Published: March 2022

Abstract
Background
In contexts where poverty and mental health stressors already interact to negatively impact the most vulnerable populations, COVID-19 is likely to have worsened these impacts. Before the COVID-19 pandemic, adolescent girls and young women (AGYW) in South Africa already faced intersecting mental health stressors and vulnerabilities. It is critical to understand how additional challenges brought on by COVID-19 have intersected with existing vulnerabilities and mental health risks AGYW faced, particularly given the intersections between psychological distress and increased risk behaviours that impact sexual and reproductive health. We aimed to examine socio-economic and mental health impacts of COVID-19 on South African AGYW in order to understand how additional challenges brought on by COVID-19 have intersected with existing challenges, compounding AGYW vulnerabilities.

Methods
Using qualitative and quantitative methods, framed by the syndemic theory, we examined the intersections between mental health and the COVID-19 epidemic amongst AGYW in six districts of South Africa characterised by high rates of HIV, teenage pregnancy and socio-economic hardship. Between November 2020 and March 2021 we conducted a cross-sectional telephone survey with 515 AGYW, and in-depth interviews with 50 AGYW, aged 15 to 24 years.

Results
Our findings reveal how COVID-19 restrictions led to increased experiences of stress and anxiety. Poor mental health was compounded by strained family relationships, increased fear of domestic violence, household unemployment, economic stress and food insecurity. Respondents described feelings of boredom, frustration, isolation, loneliness, fear and hopelessness. However, despite the multitude of challenges, some AGYW articulated emotional resilience, describing ways in which they coped and retained hope.

Conclusion
Various psycho-social risk factors already disproportionally affect the mental health of AGYW in these communities; the COVID-19 pandemic intersects with these pre-existing social and environmental factors. Understanding strategies AGYW have used to positively cope with the uncertainty of COVID-19 amongst an array of pre-existing mental health stressors, is key in informing efforts to respond to their needs. Multisectoral interventions are needed to address the drivers of poor mental health among AGYW, and bolster healthy coping mechanisms; interventions seeking to mitigate the mental health impacts on this vulnerable population need to be responsive to the unpredictable pandemic environment.
Direct interaction of TrkA/CD44v3 is essential for NGF-promoted aggressiveness of breast cancer cells
Authors: Trouvilliez Sarah , Cicero Julien , Lévêque Romain , Aubert Léo , Corbet Cyril , Van Outryve Alexandre , Streule Karolin , Angrand Pierre-Olivier , Völkel Pamela , Magnez Romain , Brysbaert Guillaume , Mysiorek Caroline , Gosselet Fabien , Bourette Roland , Adriaenssens Eric , Thuru Xavier , Lagadec Chann , de Ruyck Jérôme , Orian-Rousseau Véronique , Le Bourhis Xuefen , Toillon Robert-Alain 
Published: March 2022

Abstract
Background
CD44 is a multifunctional membrane glycoprotein. Through its heparan sulfate chain, CD44 presents growth factors to their receptors. We have shown that CD44 and Tropomyosin kinase A (TrkA) form a complex following nerve growth factor (NGF) induction. Our study aimed to understand how CD44 and TrkA interact and the consequences of inhibiting this interaction regarding the pro-tumoral effect of NGF in breast cancer.

Methods
After determining which CD44 isoforms (variants) are involved in forming the TrkA/CD44 complex using proximity ligation assays, we investigated the molecular determinants of this interaction. By molecular modeling, we isolated the amino acids involved and confirmed their involvement using mutations. A CD44v3 mimetic peptide was then synthesized to block the TrkA/CD44v3 interaction. The effects of this peptide on the growth, migration and invasion of xenografted triple-negative breast cancer cells were assessed. Finally, we investigated the correlations between the expression of the TrkA/CD44v3 complex in tumors and histo-pronostic parameters.

Results
We demonstrated that isoform v3 (CD44v3), but not v6, binds to TrkA in response to NGF stimulation. The final 10 amino acids of exon v3 and the TrkA H112 residue are necessary for the association of CD44v3 with TrkA. Functionally, the CD44v3 mimetic peptide impairs not only NGF-induced RhoA activation, clonogenicity, and migration/invasion of breast cancer cells in vitro but also tumor growth and metastasis in a xenograft mouse model. We also detected TrkA/CD44v3 only in cancerous cells, not in normal adjacent tissues.

Conclusion
Collectively, our results suggest that blocking the CD44v3/TrkA interaction can be a new therapeutic option for triple-negative breast cancers.
Commentary: Demystifying Doppler – revisiting a vital diagnostic tool
Authors: Tehan Peta , Sommerset Jill , Rounsley Richard , Fox Martin 
Published: March 2022

AbstractDoppler is the most commonly utilised vascular assessment tool by podiatrists in Australia and the United Kingdom. Doppler is a key component of many international guidelines for vascular assessment. Used alongside pressure measurements such as ankle and toe‐brachial indices, Doppler assists podiatrists to diagnose, triage and subsequently manage patients with peripheral arterial disease. This commentary aims to clarify the importance, technique, and interpretation of continuous wave handheld Doppler in podiatry practice. This commentary presents discussion on the equipment and optimal test conditions for use of Doppler, and guidance on the technique required in podiatry clinical practice. Furthermore, there is a focus on interpretation of the output from Doppler including both audio and visual output. There is in depth discussion about identifying pathology and integration into the clinical management plan.
SHOOT: phylogenetic gene search and ortholog inference
Authors: Emms David Mark , Kelly Steven 
Published: March 2022

AbstractDetermining the evolutionary relationships between genes is fundamental to comparative biological research. Here, we present SHOOT. SHOOT searches a user query sequence against a database of phylogenetic trees and returns a tree with the query sequence correctly placed within it. We show that SHOOT performs this analysis with comparable speed to a BLAST search. We demonstrate that SHOOT phylogenetic placements are as accurate as conventional tree inference, and it can identify orthologs with high accuracy. In summary, SHOOT is a fast and accurate tool for phylogenetic analyses of novel query sequences. It is available online at www.shoot.bio.
Effect of high-flow nasal therapy on patient-centred outcomes in patients at high risk of postoperative pulmonary complications after cardiac surgery: a study protocol for a multicentre adaptive randomised controlled trial
Authors: Earwaker Melissa , Villar Sofia , Fox-Rushby Julia , Duckworth Melissa , Dawson Sarah , Steele Jo , Chiu Yi-da , Litton Edward , Kunst Gudrun , Murphy Gavin , Martinez Guillermo , Zochios Vasileios , Brown Val , Brown Geoff , Klein Andrew 
Published: March 2022

Abstract
Background
High-flow nasal therapy is a non-invasive form of respiratory support that delivers low-level, flow dependent positive airway pressure. The device can be better tolerated by patients than alternatives such as continuous positive airway pressure. The primary objective is to determine if prophylactic high-flow nasal therapy after tracheal extubation can result in an increase in the number of days alive and at home within the first 90 days after surgery, when compared with standard oxygen therapy. The co-primary objective is to estimate the incremental cost-effectiveness and cost-utility of high-flow nasal therapy vs standard oxygen therapy at 90 days, from the view-point of the public sector, the health service and patients.

Methods
This is an adaptive, multicentre, international parallel-group, randomised controlled trial with embedded cost-effectiveness analysis comparing the use of high-flow nasal therapy with control in patients at high risk of respiratory complications following cardiac surgery. Participants will be randomised before tracheal extubation and allocated either high-flow nasal therapy or standard oxygen therapy for a minimum of 16 h immediately post extubation. Participants will be followed up until 90 days after surgery. The total sample size needed to detect a 2-day increase in DAH90 with 90% power with an intention to treat analysis is 850 patients. The adaptive design includes an interim sample size re-estimation which will provide protection against deviations from the original sample size assumptions made from the single-centre pilot study and will allow for a maximum sample size increase to 1152 patients.

Discussion
Evidence to support routine use of high-flow nasal therapy will inform the development of effective enhanced recovery care bundles. Reducing complications should reduce length of stay and re-admission to hospital and provide an important focus for cost reduction. However; high-quality studies evaluating the clinical and cost effectiveness of high-flow nasal therapy after cardiothoracic surgery are lacking.

Trial registration
The study has been registered with ISRCTN (ISRCTN14092678, 13/05/2020)
Clinicaltrials.gov Registration Pending
Synthesis of metal anthranilate complexes: catalytic and antipathogenic studies
Authors: Nawaz Muhammad , Abbasi Muhammad Waseem , Tariq Marium , Graham John Patrick , Al-Hagri Abdul-Rahman Saleh , Elkarim Ahmed Awad , Mohamed Muayad Elsiddig , Nissapatorn Veeranoot , Taha Muhammad , Hisaindee Soleiman 
Published: March 2022

Abstract
Background
Anthranilic acid is an active compound with diverse biological activities such as anti-inflammatory, antineoplastic, anti-malarial and α-glucosidase inhibitory properties. It can also chelate transition metals to form complexes with applications as antipathogens, photoluminescent materials, corrosion inhibitors, and catalysts.

Results
Anthranilic acid complexes (1–10) of Zn(II), Bi(III), Ag(I), Fe(II), Co(II), Cu(II), Mn(II), Al, Ni(II), and Cr(III) were synthesized and characterized using thermogravimetric (TGA), elemental analysis, FT-IR, UV–vis spectrometry, mass spectrometry and magnetic susceptibility. The morphology and size of metal complex (1–10) particles were determined by scanning electron microscope (SEM) and the surface area was determined by BET analysis. TGA and CHN analysis data indicated that the stoichiometries of complexes were 1:2 metal/ligand except for Ag(I), Al and Bi. Furthermore, DFT study was performed to optimize the structure of selected complexes. The complexes (1–10) were evaluated for their catalytic activity in the reduction of 4-nitrophenol (4-NP), antibacterial activity against S. aureus, P. aeroginosa and E. coli as well as their antifungal activity against F. solani and A. niger. The complexes were also tested against the second-stage juveniles (J2) root-knot nematodes.

Conclusion
Co(II) complex 5 and Cu(II) complex 6 showed high catalytic activity for the reduction of 4-NP to 4-aminophenol (4-AP). Ag(I) complex 3 showed the best activity against the pathogens that were tested namely clinically important bacteria S. aureus, P. aeroginosa and E. coli, commercially important fungi F. solani and A. niger and J2 root-knot nematodes M. javanica.
A pilot study: the relationship between salivary MCP-1 and IgA, and exercise performance in long-distance runners and sprinters
Authors: Uchida Masataka , Suga Tadashi , Terada Masafumi , Isaka Tadao 
Published: March 2022

Abstract
Objective
It remains unclear that the relationship between sprint and/or endurance performance and salivary immunological factors and stress hormones in athletes. The aim of this study was to investigate if salivary immunological factors and stress hormones are related to sprint and endurance performance in sprinters and long-distance runners. Fourteen male sprinters provided 100-m record and 22 male long-distance runners provided 5000-m record. Salivary IgA, MCP-1, interleukin-8, and cortisol levels in sprinters and long-distance runners were measured by ELISA assay.

Results
No significant differences were found in all salivary parameters between sprinters and long-distance runners. In long-distance runners, the salivary IgA and MCP-1 concentrations and secretory rate significantly correlated with their personal best 5000-m times (r = 0.534, P = 0.011; r = 0.567, P = 0.006; r = 0.452, P = 0.035, respectively). In sprinters, the salivary IgA concentration, MCP-1 concentration, and MCP-1 secretory rate did not correlate with personal best 100-m sprint times (r = − 0.260, P = 0.369; r = 0.128, P = 0.663; r = 0.122, P = 0.677, respectively). Therefore, the present study is the first to determine that immunological factors such as IgA and MCP1 may be related to endurance performance in long-distance runners.
Integrative analysis of DNA methylation and gene expression reveals key molecular signatures in acute myocardial infarction
Authors: Luo Xiaoli , Hu Yi , Shen Junwei , Liu Xinwen , Wang Tao , Li Li , Li Jue 
Published: March 2022

Abstract
Backgrounds
Acute myocardial infarction (AMI) has been one of the most fatal diseases among all types of heart diseases due to its rapid onset and high rates of fatality. Understanding accurately how multi-omics molecular features change at the early stage of AMI is crucial for its treatment. Currently, the changes involved in DNA methylation modification and gene expression of multiple genes have remained unexplored.

Results
We used the RNA-seq and MeDIP-seq on heart tissues from AMI mouse models at series of time points (Sham, AMI 10-min, 1-h, 6-h, 24-h and 72-h), to comprehensively describe the transcriptome and genome-wide DNA methylation changes at above time points. We identified 18814, 18614, 23587, 26018 and 33788 differential methylation positions (DMPs) and 123, 135, 731, 1419 and 2779 differentially expressed genes (DEGs) at 10-min, 1-h, 6-h, 24-h and 72-h AMI, respectively, compared with the sham group. Remarkably, the 6-h AMI with the drastic changes of DEGs and a large number of enriched functional pathways in KEGG may be the most critical stage of AMI process. The 4, 9, 40, 26, and 183 genes were further identified at each time point, based on the negative correlation (P < 0.05) between the differential mRNA expression and the differential DNA methylation. The mRNA and the promoter methylation expressions of five genes (Ptpn6, Csf1r, Col6a1, Cyba, and Map3k14) were validated by qRT-PCR and BSP methods, and the mRNA expressions were further confirmed to be regulated by DNA methylation in cardiomyocytes in vitro.

Conclusions
Our findings profiled the molecular variations from the perspective of DNA methylation in the early stage of AMI and provided promising epigenetic-based biomarkers for the early clinical diagnosis and therapeutic targets of AMI.
Epithelioid hemangioendothelioma of the spine: an analysis of imaging findings
Authors: Chen Yongye , Xing Xiaoying , Zhang Enlong , Zhang Jiahui , Yuan Huishu , Lang Ning 
Published: March 2022

Abstract
Background
Epithelioid hemangioendothelioma (EHE) is a low-grade malignant vascular neoplasm with the potential to metastasize. Primary EHE of the spine is very rare and an accurate diagnosis is crucial to treatment planning. We aim to investigate the imaging and clinical data of spinal EHE to improve the understanding of the disease.

Methods
We retrospectively analyzed the imaging manifestations and clinical data of 12 cases with pathologically confirmed spinal EHE. The imaging features analyzed included number, locations, size, border, density, signal, majority of the lesions, expansile osteolysis, residual bone trabeculae, sclerotic rim, vertebral compression, enhancement.

Results
Patients included 5 female and 7 male patients (mean age: 43.0 ± 19.6 years; range 15–73 years). Multiple lesions were noted in 1 case and single lesion was noted in 11 cases. The lesions were located in the thoracic, cervical, lumbar, and sacral vertebrae in 7, 3, 1, and 1 cases, respectively. They were centered in the vertebral body and posterior elements in 9 and 3 cases, respectively. Residual bone trabeculae, no sclerotic margin, and surrounding soft-tissue mass were noted in 11 cases, each, and mild expansile osteolysis and vertebral compression were noted in 10 and 6 cases, respectively. MRI was performed for 11 patients, all of whom showed isointensity on T1WI, hyperintensity or slight hyperintensity on T2WI, and hyperintensity on fat-suppressed T2WI. A marked enhancement pattern was noted in 10 cases.

Conclusion
Spinal EHE tend to develop in the thoracic vertebrae. EHE should be considered when residual bone trabeculae can be seen in the bone destruction area, accompanied by pathological compression fracture, no sclerotic rim, and high signal intensity for a vascular tumor on T2WI.
On some Volterra–Fredholm and Hermite–Hadamard-type fractional integral inequalities
Authors: Doubbi Bounoua Mohamed , Tang Jianhua 
Published: March 2022

AbstractThe main aim of this paper is establishing some new Volterra–Fredholm and Hermite–Hadamard-type fractional integral inequalities, which can be used as auxiliary tools in the study of solutions to fractional differential equations and fractional integral equations. Applications are also given to explicate the availability of our results.
Vaccination as an alternative to non-drug interventions to prevent local resurgence of COVID-19
Authors: Pan Jinhua , Zhu Wenlong , Tian Jie , Liu Zhixi , Xu Ao , Yao Ye , Wang Weibing 
Published: March 2022

Abstract
Background
While a COVID-19 vaccine protects people from serious illness and death, it remains a concern when and how to lift the high-cost and strict non-pharmaceutical interventions (NPIs). This study examined the joint effect of vaccine coverage and NPIs on the control of local and sporadic resurgence of COVID-19 cases.

Methods
Between July 2021 and January 2022, we collected the large-scale testing information and case number of imported COVID-19 patients from the website of the National Health Commission of China. A compartment model was developed to identify the level of vaccine coverage that would allow safe relaxation of NPIs, and vaccination strategies that can best achieve this level of coverage. We applied Monte Carlo simulation 50 000 times to remove random fluctuation effects and obtain fitted/predicted epidemic curve based on various parameters with 95% confidence interval at each time point.

Results
We found that a vaccination coverage of 50.4% was needed for the safe relaxation of NPIs, if the vaccine effectiveness was 79.3%. The total number of incidence cases under the key groups firstly strategy was 103 times higher than that of accelerated vaccination strategy. It needed 35 months to fully relax NPIs if the key groups firstly strategy was implemented, and 27 months were needed with the accelerated vaccination strategy. If combined the two strategies, only 8 months are needed to achieve the vaccine coverage threshold for the fully relaxation of NPIs. Sensitivity analyses results shown that the higher the transmission rate of the virus and the lower annual vaccine supply, the more difficult the epidemic could be under control. When the transmission rate increased 25% or the vaccination effectiveness rate decreased 20%, 33 months were needed to reduce the number of total incidence cases below 1000.

Conclusions
As vaccine coverage improves, the NPIs can be gradually relaxed. Until that threshold is reached, however, strict NPIs are still needed to control the epidemic. The more transmissible SARS-CoV-2 variant led to higher resurgence probability, which indicates the importance of accelerated vaccination and achieving the vaccine coverage earlier.

Graphical Abstract
Technological disruption and democracy in the twenty-first century
Authors: Arocena Felipe , Sansone Sebastián , Alvarez Nicolás 
Published: March 2022

SummaryIn 2019, sociologist Manuel Castells categorically stated that liberal democracy has exhausted its historical trajectory and, quoting some verses by Octavio Paz, expressed: “Not what it could have been:/it is what it was./And what it was is dead.” In this paper, we will reflect on this diagnosis based on five interrelated questions. To what extent is liberal democracy being affected by the current informational technological acceleration? Is there really a democratic crisis? What lessons can be learned from the Cambridge Analytica event? Will it be possible to manipulate feelings: hacking humans? What are the paths available for the future?
IDC: quantitative evaluation benchmark of interpretation methods for deep text classification models
Authors: Khaleel Mohammed , Qi Lei , Tavanapong Wallapak , Wong Johnny , Sukul Adisak , Peterson David A. M. 
Published: March 2022

AbstractRecent advances in deep neural networks have achieved outstanding success in natural language processing tasks. Interpretation methods that provide insight into the decision-making process of these models have received an influx of research attention because of the success and the black-box nature of the deep text classification models. Evaluation of these methods has been based on changes in classification accuracy or prediction confidence when removing important words identified by these methods. There are no measurements of the actual difference between the predicted important words and humans’ interpretation of ground truth because of the lack of interpretation ground truth. A large publicly available interpretation ground truth has the potential to advance the development of interpretation methods. Manual labeling important words for each document to create a large interpretation ground truth is very time-consuming. This paper presents (1) IDC, a new benchmark for quantitative evaluation of interpretation methods for deep text classification models, and (2) evaluation of six interpretation methods using the benchmark. The IDC benchmark consists of: (1) Three methods that generate three pseudo-interpretation ground truth datasets. (2) Three performance metrics: interpretation recall, interpretation precision, and Cohen’s kappa inter-agreement. Findings: IDC-generated interpretation ground truth agrees with human annotators on sampled movie reviews. IDC identifies Layer-wise Relevance Propagation and the gradient-by-input methods as the winning interpretation methods in this study.