bluuebunny/crossref_metadata_2025_split huggingface dataset:
Transformation, stability and biodiversity of phytocenosis depending on their initial conditions
Authors: Mishin I N , Mishina E N 
Published: February 2022

Abstract
The paper presents the results of long-term observations of the agricultural land transformation into natural phytocenoses. The comparative analysis of sustainability and biodiversity of two closely located Plots No. 1 and No. 2 showed that the initial state of the land mainly determines these indicators. The transformation of well-cultivated fallows of Plot No. 1 was with a sufficiently high rate of succession. It led to the disturbance of the ecosystem, the degradation of the phytocenosis and a low level of biodiversity and productivity. A decrease in the number of almost all entomophilous plants, including Fabaceae, Asteraceae, from 25.6% to 3.4% was on the plot in the period from the 6th year. Moreover, there were shrubs of the test plot with birch the appearance of dominant species, by nettle and willow-herb. The transformation of seeded herbage with a Legume component of Plot No. 2 by the year 8 led to the displacement of sown grasses, the emergence of synusia with a high density and biomass of plants based on hybrid clover and Poaceae. They occupied a large area of Plot No. 2 and determined a steady state of the biocenosis with high biodiversity and productivity, with the retention of a high number of Fabaceae in the herbage from 9 to 16% for a long time. The paper indicates that the management by the initial state of phytocenoses, in particular, haymaking and a clover-cereal mixture sowing, makes it possible to change the direction of transformation of biocenoses and carry out long-term planning and restoration of their stability and biodiversity.
Vitality of Rubus arcticus L. in medium and southern taiga
Authors: Gudovskikh Yu V 
Published: February 2022

Abstract
Vitality strategies for 11 coenopopulations of arctic bramble (Rubus arcticus L.) were defined in conditions of medium and southern taiga on the edge of the species range. In studied conditions optimal habitats for R. arcticus growth, while maintaining high vitality index, are open meadows and coniferous-small-leaved forests with high level of soil moisture: Epilobium-gramineous wet meadow formed on a runway and surrounded by spruce-birch forest with pine and aspen-birch herbaceous forest with spruce. The study showed that the pedicel length, width of the central lobe of the 3rd leaf from the metamere base, and number of living leaves are the most sensitive features which react to the state of environment. R. arcticus shows 3 ontogenetic tactics near the border of its range: divergent, convergent and stabilizing tactic. Most of morphological features studied prove divergent character of ontogenetic tactic, which determines the increase in features’ variability in close-to-stress conditions. Near its southern border arctic bramble uses defensive strategies for survival allowing its successful vegetative reproduction. According to the results of the study and species’ ecological peculiarities and in order to achieve effective monitoring and prognosis of the species’ state, it is important that we apply complex estimation of variability of physiological-biological and morphological parameters of R. arcticus.
Creation the map of the road and path network in the specially protected natural area for territory digression research
Authors: Novikov A V , Sumarukova O V , Shiryaeva M A , Lagutina N V , Barsukova M V 
Published: February 2022

Abstract
The research is devoted to the study of the road and path network in the park Central Park of Culture and Leisure named after Y. A. Gagarin which located in Chelyabinsk. This research is important to solve the issues on the study of the development of digression. The park is located close to a residential area, a large shopping complex and a university with a campus -these factors affect the anthropogenic load on the territory. In the course of the research, field work, mathematical calculations were carried out and map was created to visualize the results obtained. A schematic map of the road and path network of a section of the investigated territory was created. The southern part of the park is less prone to trampling and this area is closed to stages 3-4 of digression. While the part of the park near the railway is the least prone to trampling and degree of digression is closed to stage 2-3. Based on the results obtained, it is necessary to develop a road and path network throughout the park in order to reduce the anthropogenic impact on nature in certain parts of the park.
Monitoring work on the study of the biodiversity of the flora of the reserves
Authors: Petrisheva Tatyana Yu , Usacheva Irina N , Kravchenko Antonina L , Polteva Anastasia V , Masina Tatyana A 
Published: February 2022

Abstract
Monitoring assessment of the state of conservation area is a relevant and important direction in ecology. However, not all parameters of the ecological balance are checked by state services. The wide scale of specially protected areas also makes it difficult to analyze them in detail by all indicators. Therefore, it is significant to conduct a comprehensive study of such sites locally, taking into account the diversity of environmental sustainability indicators. The paper analyzes the biological diversity of flora within one of the reserves of the Belgorod region, with an emphasis on the state of tree species. The morphological assessment of the discovered species and their ecological characteristics are given. The influence of the industrial zone of the adjacent territories on the vegetation of the reserve and the microbial equilibrium of the soil cover was evaluated. In general, the ecological state of the flora is assessed as good; the microbial composition corresponds to the typical for chernozem soils. At the same time, recommendations are given for further monitoring of biodiversity indicators in this area, in order to maintain the ecological balance, preserve the species composition of vegetation and the diversity of the soil microbial community.
Towards low carbon development strategies from forestry sector in West Papua
Authors: Hendri  , Raharjo Syarifudin , Suarga Egi , Faruk Rosyaridho M. , Kalmirah Julia 
Published: February 2022

Abstract
The forestry sector plays an important role in mitigating and adapting to climate change. In the NDC Indonesia Report (2021), forestry and other land use (FOLU) sectors contribute emission based on BAU projected 2030 of 714 Mt CO2e and emission reduction for both unconditional (Counter Measure, CM1) of 17.2% and conditional (CM2) of 24.5%. FOLU emissions correlated with changes in the primary forest to secondary (degradation) and primary/secondary forest to other uses for agriculture, transmigration, plantations and others (deforestation). Due to climate change, the conditions of degradation and deforestation can bring disaster, especially triggered by hydrometeorological hazards that have catastrophic impacts such as floods, flash floods, droughts, erosion, and abrasion due to changes in land cover. Therefore, low carbon development strategies from the forestry sector are needed to reduce climate-related disasters in West Papua.
Assessment of the Coastal Vulnerability Index (CVI) for disaster mitigation strategies in some coastal tourism areas in Gunungkidul, Yogyakarta-Indonesia
Authors: Widura Elsa , Mardiatno Djati 
Published: February 2022

Abstract
South coastal area of Gunungkidul, Yogyakarta-Indonesia has a high tourism development due to the unique physical conditions of coastal typology. However, during the last few years, extreme wave height associated with cyclones damaged many tourist facilities there. Coastal management for ecosystem sustainability requires disaster mitigation, which one considering the aspect of vulnerability. This study aims to assess the level of coastal vulnerability according to coastal typology of Baron-Pok Tunggal section and to determine the coastal management model based on the level of vulnerability. The Coastal Vulnerability Index (CVI) is used in vulnerability assessment. The variable formulation of CVI is divided into hydrodynamic factors (mean significant wave heights, mean tide range, and mean sea level rise) and morphodynamics factors, i.e. geomorphology, coastal slope, and average width of emerged beach. The morphodynamics data were obtained through observation, direct measurements in the field by systematic sampling, extraction from aerial photographs and digital surface model (DSM). The results of modeling and predictions by several agencies are derived to obtain the hydrodynamics data. The result of this study revealed that marine deposition coast typology have a high and moderate vulnerability (twelve and eleven coastal units, respectively). Meanwhile, a low vulnerability can be found in the cliff coast or wave erosion coast typology (24 units). The convex or concave beaches tend to be more vulnerable than beaches with the straight form. The beaches of Buluk, Drini, Kosakora, Sarangan and all beaches from Krakal to Indrayanti have a high vulnerability. Geomorphological variables, significant wave height, and sea level rise have the strongest influence on vulnerability. Coastal management in the marine deposition coast typology can be carried out either in a protective manner or by accommodative approach, such as by observing changes in natural conditions due to sea level rise.
The analysis of coastline changes of maruni beach in Manokwari during 1995-2021 period
Authors: Tapilatu Maryrose E. , Siburian Rima H. S. , Tapilatu Ricardo F. 
Published: February 2022

Abstract
The coastal area of Maruni at Manokwari Regency is known for its potential as a fish-producing area, industry, settlements, ports, and others. However, some parts of Maruni coastal areas have been damaged due to the development. The coastal area experienced changes caused by both natural processes and human activities. The presence of natural and artificial processes in coastal areas results in accretion and abrasion. The dynamics of oceanographic pressures such as sea tidal, sea waves, ocean currents, and tides occurring in the Maruni Beach area cause changes in the movement of sediments affecting the coastal area. Continuous changes can be a threat to Maruni coastal line as the Trans Papua Barat Road passed this route. This research was conducted with the aim to quantify the rate of coastline changes and oceanographic dynamics of Maruni coastal line at the south part of Manokwari Regency, Papua Barat Province from 1995 to 2021. The utilization of remote sensing interpretation method from Landsat 5 TM, Landsat 8 OLI, and oceanographic data providers (BIG, ECMWF) accommodated data source. The analysis result concluded that changes in the coastline at Maruni Coastal line during the 1995-2021 period predominantly encountered abrasion. The magnitude rate of change experienced a very small accretion, but was replaced by a very high abrasion event that occurred during two observation periods between 1995-2021.
Protection of the elderly in disaster situations in Indonesia
Authors: Tukino  
Published: February 2022

Abstract
The territory of Indonesia is an area that is prone to disasters, both natural, non-natural and social disasters. Thus, the elderly in Indonesia live in a situation of threat of disaster. This study uses a secondary data research method with locus is focused on areas of Indonesia where disasters have occurred in the last five years from 2016 to 2020, namely; earthquake in Pidie Jaya, earthquake and tsunami in Lombok, earthquake and tsunami in Palu, social disaster in Mempawah-West Kalimantan, flash floods in Garut, and the Covid-19 disaster. The data collected was then analyzed using document analysis techniques.
Our analysis result concluded that the absence of caregiver who specifically provide programmed assistance, makes the elderly feel lonely, stressed and traumatized. Social workers contribute to the handling of the elderly in disaster locations focused on psychosocial support, and advocacy of legislative policies.
Identification of Land Use and Land Change due to its impact on Groundwater Level in Surakarta city
Authors: Koesuma Sorja , Sunaryo  , Handono Ramelan Ari , Sutarno Doddy 
Published: February 2022

Abstract
Surakarta City is the center of economic activity in the great Solo area. As a result, land use changes occur very quickly. This study aims to identify land use and land changes due to their effects on groundwater levels in Surakarta City. The method used in this research is a descriptive-quantitative method. The analysis technique used is time series, by comparing image data for 2003, 2008, and 2019. The image is obtained from Google Earth and then visually interpreted in a GIS application to get the land use area. Land use in Surakarta City includes buildings, agriculture, vacant land, tourist land, waters, settlements, green open spaces, rice fields, shrubs, and dryland agriculture. The results of image processing show that there is a change in land use in Surakarta City. The results show that there is a relationship between land use/change with an increase in population and ground water use. The areas most affected by the decline in groundwater are in the central part of the city of Surakarta, especially in the villages of Sangkrah and Semanggi.
Proposed scenario of low carbon development from waste sector in West Papua
Authors: Raharjo Syafrudin , Prabawardani Saraswati , Hendri  , Suarga Egi , Faruk Rosyaridho M , Ida Suriany , Kalmirah Julia 
Published: February 2022

Abstract
The increasing of population and economic growth, urbanization, development progress and living standard has accelerated the rate and amount of waste generation. Waste is a serious problem of a worldwide concern because of its impact on environmental pollution, health and flood disasters in some drainages and rivers. Proper waste management is needed to reduce or prevent its negative impacts. For this reason, it is necessary to identify the types of waste and their potential to produce greenhouse gas emissions in order to obtain an accurate picture in an effort to formulate policies and strategies for reducing GHG emissions. The method used was thinking system and dynamic system by looking at the BAU scenario, 29%, 41% and 44% emission reduction. Based on the model of the dynamics system, a new scenario is needed through the intervention of waste processing by 3R at TPS and TPA, applying aerobic composting, methane capture and incineration.
Coral Reef Damage Caused by The Indinurmatalia07 Grounding in Cross-over Reef, Lemon Island of Manokwari Papua Barat Province
Authors: Sitanala Alex R. , Krey Hance , Rumfabe Marthen , Rumbekwan Nelman , Sanyar Melkias , Hein Biloro Rimer , Mofu Muda , Krey Vecky , Alzair Nur , Tapilatu Ricardo F. 
Published: February 2022

AbstractThe cargo ship, Indi Nurmatalia07, ran aground on 07 August, 2021 at 23.00 at ‘Cross Over’ reef in the Dorery Bay – Manokwari. The interim report revealed that the ship’s officer was not able to control the ship when it left Manokwari port due to bad weather condition when the ship left at 19.00. However, report on the cause of bad weather was doubtful because the distance between the port of Manokwari and the incident site is only about 500m. The vessel was later freed from the reef on 10 August 2021 at 19.00 after disembarking shipload. An initial quantitative assessment of damages was conducted by a local team within the grounding site. Four line transect surveys were conducted, each 25m in length and 2m in width, positioned in the left and right of the damaged and undamaged area. Our initial results demonstrated that a total area of 717,02m2has been damaged by the cargo ship. The type of coral reef formation is patch reef with medium diversity of coral species (mainly genusAcropora,Pocillopora,Coeloseris,Millepora, andGoniopora) and coral cover. Cross over reef has a shallow reef top (between 3-10m depth), slopes down to at least 25m. The reef is subject to high velocity current that might be unsuitable for coral planula to settle permanently. Coral structures were partly crushed and fractured at the edge of the damaged area but totally damaged in central part. The central damaged site has lost remarkable bottom coral structure and diversity from at least 5 different coral genera. By using a comparison study conducted on ship groundings, the Provincial government would sue the cargo ship and insurance company to pay environmental losses due to environmental based on a calculation which considered damage in relation to the ecosystem, economy, society and ecosystem rehabilitation referring to PerMen LH No. 7/2014.
Subnanosecond widely-tunable in the visible spectrum range LBO based optical parametric amplifier
Authors: Stanionytė G , Vėjalytė E , Tamulienė V , Jarutis V , Vengelis J 
Published: February 2022

Abstract
We report realization of a widely-tunable subnanosecond optical parametric amplifier system in LBO crystal pumped by third harmonic of a passively Q-switched Nd:YAG microlaser system. It yields continuous signal wavelength tunability in the visible spectrum range from 460 to 680 nm and idler wavelength — from 740 to 1500 nm. We present experimental data and numerical simulations of our optical parametric amplifier and discuss future improvement directions for greater pump to signal conversion efficiency.
Prompt acceleration of a μ
+ beam in a toroidal wakefield driven by a shaped steep-rising-front Laguerre–Gaussian laser pulse
Authors: Wang Xiaonan , LAN Xiaofei , HUANG Yongsheng , JIANG Youge , ZHANG Chunlei , ZHANG Hao , YU Tongpu 
Published: February 2022

Abstract
Recent experimental data for anomalous magnetic moments strongly indicates the existence of new physics beyond the Standard Model. Energetic μ
+ bunches are relevant to μ
+ rare decay, spin rotation, resonance and relaxation (μSR) technology, future muon colliders, and neutrino factories. In this paper, we propose prompt μ
+ acceleration in a nonlinear toroidal wakefield driven by a shaped steep-rising-front Laguerre–Gaussian (LG) laser pulse. An analytical model is described, which shows that a μ
+ beam can be focused by an electron cylinder at the centerline of a toroidal bubble and accelerated by the front part of the longitudinal wakefield. A shaped LG laser with a short rise time can push plasma electrons, generating a higher-density electron sheath at the front of the bubble, which can enhance the acceleration field. The acceleration field driven by the shaped steep-rising-front LG laser pulse is about four times greater than that driven by a normal LG laser pulse. Our simulation results show that a 300 MeV μ
+ bunch can be accelerated to 2 GeV and its transverse size is focused from an initial value of w
0 = 5 μm to w = 2 μm in the toroidal bubble driven by the shaped steep-rising-front LG laser pulse with a normalized amplitude of a = 22.
Acute elevation of liver function test values following concomitant administration of dabigatran and primidone
Authors: Caviness Lisa A , Wassell Katelyn M , Howard-Thompson Amanda 
Published: February 2022

Abstract

Purpose
We report a unique case of transiently elevated liver function test (LFT) values associated with concurrent use of dabigatran and primidone, which has not previously been described in the scientific literature.

Summary
Management of drug-drug interactions requires a fundamental understanding of pharmacodynamic and pharmacokinetic parameters. Despite the use of available best predictive models, idiosyncratic drug reactions may still occur when a newly approved medication begins to be used in the general population. We report a case of a possible interaction (Naranjo adverse drug reaction probability score of 3, Roussel Uclaf causality assessment method score of 3) between dabigatran and primidone in a 70-year-old Caucasian male resulting in a transient elevation of LFT values. The patient was transitioned from warfarin to dabigatran in the setting of persistently subtherapeutic international normalized ratio values. During a routine outpatient follow-up appointment approximately 1 month after dabigatran initiation, the patient was discovered to have LFT values greater than 5 times the upper limit of normal. Dabigatran was thus discontinued; the patient was returned to warfarin therapy and their LFT values returned to baseline.

Conclusion
Studies have indicated a potential for reduced dabigatran efficacy with concurrent use of primidone due to P-glycoprotein induction, thereby potentiating the risk for thrombosis. To date, reports of this interaction resulting in hepatic injury are lacking. The present case suggests that this interaction may be clinically significant with regard to selection of antithrombotic medication therapy in patients on primidone therapy.
Evaluation of machine learning models on protein level inference from prioritized RNA features
Authors: Xu Wenjian , He Haochen , Guo Zhengguang , Li Wei 
Published: February 2022

Abstract
The parallel measurement of transcriptome and proteome revealed unmatched profiles. Since proteomic analysis is more expensive and challenging than transcriptomic analysis, the question of how to use messenger RNA (mRNA) expression data to predict protein level is extremely important. Here, we comprehensively evaluated 13 machine learning models on inferring protein expression levels using RNA expression profile. A total of 20 proteogenomic datasets from three mainstream proteomic platforms with &gt;2500 samples of 13 human tissues were collected for model evaluation. Our results highlighted that the appropriate feature selection methods combined with classical machine learning models could achieve excellent predictive performance. The voting ensemble model outperformed other candidate models across datasets. Adding the mRNA proxy model to the regression model further improved the prediction performance. The dataset and gene characteristics could affect the prediction performance. Finally, we applied the model to the brain transcriptome of cerebral cortex regions to infer the protein profile for better understanding the functional characteristics of the brain regions. This benchmarking work not only provides useful hints on the inherent correlation between transcriptome and proteome, but also has practical value of the transcriptome-based prediction of protein expression levels.
A statistical framework for recovering pseudo-dynamic networks from static data
Authors: Chen Chixiang , Shen Biyi , Ma Tianzhou , Wang Ming , Wu Rongling 
Published: February 2022

AbstractMotivationThe collection of temporal or perturbed data is often a prerequisite for reconstructing dynamic networks in most cases. However, these types of data are seldom available for genomic studies in medicine, thus significantly limiting the use of dynamic networks to characterize the biological principles underlying human health and diseases.ResultsWe proposed a statistical framework to recover disease risk-associated pseudo-dynamic networks (DRDNet) from steady-state data. We incorporated a varying coefficient model with multiple ordinary differential equations to learn a series of networks. We analyzed the publicly available Genotype-Tissue Expression data to construct networks associated with hypertension risk, and biological findings showed that key genes constituting these networks had pivotal and biologically relevant roles associated with the vascular system. We also provided the selection consistency of the proposed learning procedure and evaluated its utility through extensive simulations.Availability and implementationDRDNet is implemented in the R language, and the source codes are available at https://github.com/chencxxy28/DRDnet/.Supplementary informationSupplementary data are available at Bioinformatics online.