bluuebunny/crossref_metadata_2025_split huggingface dataset:
Using Innovative Machine Learning Methods to Screen and Identify Predictors of Congenital Heart Diseases
Authors: Qu Yanji , Deng Xinlei , Lin Shao , Han Fengzhen , Chang Howard H. , Ou Yanqiu , Nie Zhiqiang , Mai Jinzhuang , Wang Ximeng , Gao Xiangmin , Wu Yong , Chen Jimei , Zhuang Jian , Ryan Ian , Liu Xiaoqing 
Published: January 2022

Objective: Congenital heart diseases (CHDs) are associated with an extremely heavy global disease burden as the most common category of birth defects. Genetic and environmental factors have been identified as risk factors of CHDs previously. However, high volume clinical indicators have never been considered when predicting CHDs. This study aimed to predict the occurrence of CHDs by considering thousands of variables from self-reported questionnaires and routinely collected clinical laboratory data using machine learning algorithms.Methods: We conducted a birth cohort study at one of the largest cardiac centers in China from 2011 to 2017. All fetuses were screened for CHDs using ultrasound and cases were confirmed by at least two pediatric cardiologists using echocardiogram. A total of 1,127 potential predictors were included to predict CHDs. We used the Explainable Boosting Machine (EBM) for prediction and evaluated the model performance using area under the Receive Operating Characteristics (ROC) curves (AUC). The top predictors were selected according to their contributions and predictive values. Thresholds were calculated for the most significant predictors.Results: Overall, 5,390 mother-child pairs were recruited. Our prediction model achieved an AUC of 76% (69-83%) from out-of-sample predictions. Among the top 35 predictors of CHDs we identified, 34 were from clinical laboratory tests and only one was from the questionnaire (abortion history). Total accuracy, sensitivity, and specificity were 0.65, 0.74, and 0.65, respectively. Maternal serum uric acid (UA), glucose, and coagulation levels were the most consistent and significant predictors of CHDs. According to the thresholds of the predictors identified in our study, which did not reach the current clinical diagnosis criteria, elevated UA (&gt;4.38 mg/dl), shortened activated partial thromboplastin time (&lt;33.33 s), and elevated glucose levels were the most important predictors and were associated with ranges of 1.17-1.54 relative risks of CHDs. We have developed an online predictive tool for CHDs based on our findings that may help screening and prevention of CHDs.Conclusions: Maternal UA, glucose, and coagulation levels were the most consistent and significant predictors of CHDs. Thresholds below the current clinical definition of “abnormal” for these predictors could be used to help develop CHD screening and prevention strategies.
Development Characteristics and Finite Element Simulation of Fractures in Tight Oil Sandstone Reservoirs of Yanchang Formation in Western Ordos Basin
Authors: Wang Shilin , Li Hu , Lin Lifei , Yin Shuai 
Published: January 2022

Structural fractures have a significant control effect on the large-scale accumulation of hydrocarbons in the Yanchang Formation. Previous studies have affirmed the important role of fractures in hydrocarbon accumulations in strongly deformed zones. However, for low-amplitude structural areas, the degree of fracture development is relatively low, and their control on sweet spots of hydrocarbons has not yet formed a unified understanding. In this paper, taking the Upper Triassic Yanchang Formation in the western Ordos Basin as an example, the development characteristics, prediction method, and the distribution of fractures in tight sandstone reservoirs in low-amplitude structural areas have been systematically studied using a large number of cores, thin sections, paleomagnetism, FMI logging, acoustic emission, productivity data, and finite element method. The research results showed that the Yanchang Formation in the study area mainly develop high-angle and vertical fractures, which were formed by regional tectonic shearing. Fractures are mainly developed in the fine-grained and ultra-fine-grained sandstones of the distributary channel and estuary bar microfacies, while the fractures in the medium-grained sandstones of the distributary channel and the mudstones of the distributary bay are relatively underdeveloped. The core fractures and micro-fractures of the Yanchang Formation all have the regional distribution characteristics, and the fracture strikes are mainly between NE50° and NE 70°. Moreover, the finite element method was used to predict the fractures in the target layer, and the prediction results are consistent with the actual distribution results of the fractures. The coupling analysis of fractures and tight oil sandstone distribution showed that the existence of fractures provided conditions for the accumulation of hydrocarbons in the Yanchang Formation. The confluence and turning areas of the river channels were repeatedly scoured by river water, and the rocks were brittle and easy to form fractures. The thickness of the fractured sandstone in these areas is usually greater than 0.4 m. Moderately developed fracture zones are prone to form hydrocarbon accumulation “sweet spots,” and the fracture indexes of these areas are usually distributed between 0.8 and 1.2. However, when the fracture index exceeds 1.2, over-developed fractures are unfavorable for the accumulation of hydrocarbons.
The Combination of High Levels of Adiponectin and Insulin Resistance Are Affected by Aging in Non-Obese Old Peoples
Authors: Muratsu Jun , Kamide Kei , Fujimoto Takashi , Takeya Yasushi , Sugimoto Ken , Taniyama Yoshiaki , Morishima Atsuyuki , Sakaguchi Katsuhiko , Matsuzawa Yuji , Rakugi Hiromi 
Published: January 2022

BackgroundAdipokine dysregulation is a key feature of insulin resistance and a metabolic syndrome associated with obesity. Low adiponectin levels are associated with higher risks of cardiovascular diseases (CVD). However, high adiponectin levels have also been associated with increased all-cause and cardiovascular mortality in the elderly. This adiponectin paradox has yet to be clarified, which has hindered our understanding of the biological role of adiponectin. Adipokine dysregulation and insulin resistance are also associated with energy-deprivation conditions, such as frailty in old age. The objective of this study was to investigate the association between plasma adiponectin and insulin resistance using the homeostasis model assessment for insulin resistance (HOMA-IR) classified by age. In particular, we sought to determine the factors of the subjects associated with both high adiponectin levels and HOMA-IR (H-adiponectin/H-HOMA) and high adiponectin levels and low HOMA-IR (H-adiponectin/L-HOMA).MethodsThe eligible subjects in this cross-sectional study were 33,216 individuals who had undergone health checkups at the Physical Checkup Center of Sumitomo Hospital between April 2008 and December 2018. After excluding 26,371 individuals who were under 60 years old, 529 who had been taking medications for diabetes mellitus, and 690 with missing data, the present study included 5,673 (3,467 males, 2,206 females) subjects with no missing data. The relationship between serum adiponectin levels and HOMA-IR was assessed using logistic regression models adjusted by clinically relevant factors.ResultsIn the multivariable logistic regression analysis, age and low BMI were shown to positively correlate with the characteristics of H-adiponectin/H-HOMA. In females, systolic blood pressure was also shown to be an associated factor.ConclusionIn conclusion, this study showed that aging or a low BMI may contribute to high adiponectin levels and insulin resistance.
Assessment of Soil Health Indicators Under the Influence of Nanocompounds and Bacillus spp. in Field Condition
Authors: Chaudhary Parul , Chaudhary Anuj , Bhatt Pankaj , Kumar Govind , Khatoon Hina , Rani Alka , Kumar Saurabh , Sharma Anita 
Published: January 2022

Agricultural yield of major crops is low due to the injudicious use of chemical fertilizers that affects soil fertility and biodiversity severely and thereby affecting plant growth. Soil health is regulated by various factors such as physicochemical properties of the soil, availability of micro/macronutrients, soil health indicator enzymes and microbial diversity which are essential for agriculture productivity. Thus, it is required to draw attention towards an eco-friendly approach that protects the beneficial microbial population of soil. Application of different bioinoculants and agriusable nanocompounds has been reported to enhance soil quality with increased nutrient status and beneficial bacterial population, but additive effects of combined treatments on soil microbial population are largely unknown. The present study investigated the impact of nanozeolite and nanochitosan along with two Bacillus spp. on rhizospheric microbial flora and indicator enzymes to signify soil health under field conditions on maize. Soil health was ascertained by evaluating physicochemical analysis; total bacterial counts including N, P, and K solubilizing bacteria; and soil health indicator enzymes like fluorescein diacetate hydrolysis, alkaline phosphatase, β-glucosidase, dehydrogenase, amylase, and arylesterase. Change in copy number of 16S rRNA as a marker gene was used to quantify the bacterial population using quantitative PCR (qPCR) in different treatments. Our study revealed that nanocompounds with Bacillus spp. significantly (p &lt; 0.05) enhanced total microbial count (16.89%), NPK solubilizing bacteria (46%, 41.37%, and 57.14%), and the level of soil health indicator enzymes up to twofold over control after 20, 40, and 60 days of the experiment. qPCR analysis showed a higher copy number of the 16S rRNA gene in treated samples, which also indicates a positive impact on soil bacterial population. This study presents a valuable approach to improve soil quality in combined treatments of nanocompounds and bioinoculants which can be used as a good alternative to chemical fertilizers for sustainable agriculture.
Biochar and Compost-Based Integrated Nutrient Management: Potential for Carbon and Microbial Enrichment in Degraded Acidic and Charland Soils
Authors: Rahman M. M. , Islam Md. Rafiqul , Uddin Shihab , Rahman Mohammad Mahmudur , Gaber Ahmed , Abdelhadi Abdelhadi A. , Jahangir M. M. R. 
Published: January 2022

Soil acidification and charland formation through alluvial sand deposition are emerging threats to food security in Bangladesh in that they endanger crop production in about 35% of its territory. The integrated plant nutrient system (IPNS) is a globally accepted nutrient management approach designed to revive the damaged soils’ fertility level. Total organic carbon (TOC) in soil is a composite index of soil quality that has consequences for agricultural productivity and natural soil ecosystems. This study assesses the impacts of using biochar, compost, poultry litter, and vermicompost-based IPNS approaches on labile and TOC pools, TOC stocks, lability and management indices, and microbial populations under different cropping patterns after 2 years in acidic and charland soils. The application of IPNS treatments increased microbial biomass carbon (MBC) by 9.1–50.0% in acidic soil and 8.8–41.2% in charland soil compared to the untreated soil, with the largest increase in poultry manure biochar (PMB). Microbial biomass nitrogen (MBN) rose from 20 to 180% in charland soil compared to the control, although no effect was observed in acidic soil. Basal respiration (BR) rose by 43–429% in acidic soil and 16–189% in charland soil compared to the control, exhibiting the highest value in PMB. IPNS treatments significantly improved SOC and POC but did not affect POXc and bulk density in both soils. The PMB and organic fertilizer (OF, compost)-based IPNS wielded the greatest influence on the lability index of MBC in acidic soils and the management index of MBC in both soils. This is despite the fact that IPNS did not affect the lability and management indices of active carbon (AC). IPNS treatments increased the stocks of SOC and MBC in both the soils and POC stock in acidic soil. IPNS treatments significantly boosted the bacterial and fungal populations in both soils, despite having no effect on phosphorus-solubilizing bacteria (PSB). Thus, PMB and OF (compost)-based IPNS may be a better nutrient management practice in degraded acidic and charland soils. This is especially the case in terms of soil quality improvement, soil carbon sequestration, and microbial enrichment.
Effect of Thermal Hydrolysis Pretreatment on Anaerobic Digestion of Protein-Rich Biowaste: Process Performance and Microbial Community Structures Shift
Authors: Shi Jingyang , Zhang Guangyi , Zhang Hang , Qiao Fa , Fan Jie , Bai Dingrong , Xu Guangwen 
Published: January 2022

To reveal the effects of thermal hydrolysis (TH) pretreatment (THPT) on anaerobic digestion (AD) of protein-rich substrates, discarded tofu was chosen as the object, and its batch AD tests of tofu before and after being subjected to TH at gradually increasing organic loads were carried out and the AD process characteristics were compared; furthermore, its continuous AD tests without and with THPT were also conducted and the difference of the microbial community structures was investigated. The results showed that, during AD of protein-rich tofu with increase in the organic load, inhibition from severe acidification prior to accumulation of ammonia nitrogen (AN) occurred. THPT helped overcome the acidification inhibition present in batch AD of tofu at such a high TS content of 3.6%, to obtain the maximum methane yield rate of 589.39 ml·(gVS)−1. Continuous AD of protein-rich tofu heavily depended on ammonia-tolerant hydrogenotrophic methanogens and bacteria. The continuous AD processes acclimated by HT substrates seemed to be resistant to severe organic loads, by boosting growth of ammonia-tolerant microorganisms, above all methylotrophic methanogens such as the genera RumEnM2 and methanomassiliicoccus. The process response of continuous AD of HT tofu was hysteretic, suggesting that a sufficiently long adaptation period was required for stabilizing the AD system.
Evaluation of Association Studies and an Updated Meta-Analysis of VDR Polymorphisms in Osteoporotic Fracture Risk
Authors: Mu Yi-yang , Liu Biao , Chen Bin , Zhu Wang-fa , Ye Xiang-Hua , Li Hong-zhuo , He Xiao-feng 
Published: January 2022

Background: Several studies have examined the association between vitamin D receptor (VDR) polymorphisms and osteoporotic fracture risk; however, the results are not uniform. Furthermore, many new articles have been published, and therefore, an updated meta-analysis was performed to further explore these issues.Objectives: The aim of the study was to investigate the association between VDR, BsmI, ApaI, TaqI, FokI, and Cdx2 polymorphisms and osteoporotic fracture risk.Methods: The odds ratios (ORs) and 95% confidence intervals (CIs) were used to assess the association between VDR BsmI, ApaI, TaqI, FokI, and Cdx2 polymorphisms and the risk of osteoporotic fracture. We also used the false-positive reporting probability (FPRP) test and the Venice criteria to evaluate the credibility of the statistically significant associations.Results: Overall, this study found that the VDR ApaI and BsmI polymorphisms significantly increased the risk of osteoporotic fracture in European countries and America, respectively. However, when sensitivity analysis was performed after excluding low-quality and Hardy–Weinberg disequilibrium (HWD) studies, it was found that only individuals with the double-mutated genotype have an increased risk of osteoporotic fracture in European countries. In addition, when the credibility of the positive results was assessed, it was found that the positive results were not credible.Conclusion: This meta-analysis indicates that there may be no significant association among the polymorphisms of VDR BsmI, ApaI, TaqI, FokI, and Cdx2 and the risk of osteoporotic fracture. The increased risk of osteoporotic fracture is most likely due to false-positive results.
Chimeric Antigens Receptor T Cell Therapy Improve the Prognosis of Pediatric Acute Lymphoblastic Leukemia With Persistent/Recurrent Minimal Residual Disease in First Complete Remission
Authors: Hu Guan-hua , Cheng Yi-fei , Zuo Ying-xi , Chang Ying-jun , Suo Pan , Wu Jun , Jia Yue-ping , Lu Ai-dong , Li Ying-chun , Wang Yu , Jiao Shun-chang , Zhang Long-ji , Zhao Xiang-yu , Yan Chen-hua , Xu Lan-ping , Zhang Xiao-hui , Liu Kai-yan , Wang Yu , Zhang Le-ping , Huang Xiao-jun 
Published: January 2022

BackgroundThe presence of minimal residual disease (MRD) is an independent risk factor for poor prognosis in patients with acute lymphoblastic leukemia (ALL). Moreover, the role of chimeric antigen receptor T-cell (CAR-T) therapy in patients with MRD is currently unclear.MethodsWe conducted a prospective study to investigate the role of CAR-T therapy in patients with persistent/recurrent MRD-positive ALL in first remission.ResultsA total of 77 patients who had persistent/recurrent MRD were included. Of these patients, 43 were enrolled in the CAR-T group, 20 received chemotherapy as a bridge to allogeneic hematopoietic cell transplantation (allo-HSCT), and 14 patients received intensified chemotherapy. MRD negativity was achieved in 90.7% of the patients after CAR-T infusion. Patients who received CAR-T therapy had a higher 3-year leukemia-free survival (LFS) than patients who did not (77.8% vs. 51.1%, P = 0.033). Furthermore, patients in the CAR-T group had a higher 3-year LFS than those in the chemotherapy bridge-to-allo-HSCT group [77.8% (95% CI, 64.8–90.7%) vs. 68.7% (95% CI, 47.7–89.6%), P = 0.575] and had a significantly higher 3-year LFS than those in the intensified chemotherapy group [77.8% (95% CI, 64.8–90.7%) vs. 28.6% (95% CI, 4.9–52.3%), P = 0.001]. Among the patients who received CAR-T therapy, eight were not bridged to allo-HSCT, and six (75%) remained in remission with a median follow-up of 23.0 months after CAR-T infusion.ConclusionsOur findings show that CAR-T therapy can effectively eliminate MRD and improve survival in patients with a suboptimal MRD response.
m6A Regulators Mediated Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization In Nasopharyngeal Carcinoma
Authors: Liu Zijian , He Jinlan , Han Jiaqi , Yang Jiangping , Liao Wenjun , Chen Nianyong 
Published: January 2022

BackgroundThe role of RNA N6-methyladenosine (m6A) modification in tumor progression and metastasis has been demonstrated. Nonetheless, potential biological function of m6A modification patterns in nasopharyngeal carcinoma (NPC) remains unknown.MethodsThe m6A modification patterns were comprehensively evaluated based on 26 m6A regulators in NPC, and m6A subtype and also m6A score were identified and systematically correlated with representative tumor characteristics.ResultsTwo distinct m6A subtypes were determined and were highly consistent with immune activated and immune suppressed phenotypes, respectively. More representative m6A scores of individual tumors could predict tumor microenvironment (TME) infiltration, mRNA based stemness index (mRNAsi), EBV gene expression, genetic variation, and prognosis of NPC patients. Low m6A score, characterized by activation of immunity and suppression of mRNAsi and EBV gene, indicated an activated TME phenotype and better PFS and also lower risk of recurrence and metastasis. High m6A score, characterized by activation of Wnt and NF-κB signaling pathway and lack of effective immune infiltration, indicated an immune suppressed TME phenotype and poorer survival. Low m6A score was also correlated with increased tumor mutation burden (TMB) and better response to immunotherapy, and vice versa. A significant therapeutic advantage in patients with low m6A score was confirmed with an anti-PDL1 immunotherapy cohort.Conclusionsm6A patterns played an important role in the diversity and complexity of TME. m6A score could be used to evaluate the m6A pattern of individual tumor to enhance our understanding of TME infiltration and guide more effective immunotherapy strategies.
Complement Inhibition Alleviates Cholestatic Liver Injury Through Mediating Macrophage Infiltration and Function in Mice
Authors: Guo Zhenya , Chen Junze , Zeng Yonglian , Wang Zefeng , Yao Mei , Tomlinson Stephen , Chen Bin , Yuan Guandou , He Songqing 
Published: January 2022

Background and AimsCholestatic liver injury (CLI), which is associated with inflammatory reactions and oxidative stress, is a serious risk factor for postoperative complications. Complement system is involved in a wide range of liver disorders, including cholestasis. The present study assessed the role of complement in CLI and the therapeutic effect of the site-targeted complement inhibitor CR2-Crry in CLI.MethodsWild-type and complement gene deficient mice underwent common bile duct ligation (BDL) to induce CLI or a sham operation, followed by treatment with CR2-Crry or GdCl3. The roles of complement in CLI and the potential therapeutic effects of CR2-Crry were investigated by biochemical analysis, flow cytometry, immunohistochemistry, ELISA, and quantitative RT-PCR.ResultsC3 deficiency and CR2-Crry significantly reduced liver injuries in mice with CLI, and also markedly decreasing the numbers of neutrophils and macrophages in the liver. C3 deficiency and CR2-Crry also significantly reduced neutrophil expression of Mac-1 and liver expression of VCAM-1. More importantly, C3 deficiency and CR2-Crry significantly inhibited M1 macrophage polarization in these mice. Intravenous injection of GdCl3 inhibited macrophage infiltration and activation in the liver. However, the liver injury increased significantly. BDL significantly increased the level of lipopolysaccharide (LPS) in portal blood, but not in peripheral blood. GdCl3 significantly increased LPS in peripheral blood, suggesting that macrophages clear portal blood LPS. Oral administration of ampicillin to in GdCl3 treated mice reduced LPS levels in portal blood and alleviated liver damage. In contrast, intraperitoneal injection LPS increased portal blood LPS and reversed the protective effect of ampicillin. Interestingly, C3 deficiency did not affect the clearance of LPS.ConclusionsComplement is involved in CLI, perhaps mediating the infiltration and activation of neutrophils and macrophage M1 polarization in the liver. C3 deficiency and CR2-Crry significantly alleviated CLI. Inhibition of complement could preserve the protective function of macrophages in clearing LPS, suggesting that complement inhibition could be useful in treating CLI.
Ultra-Thin Chiral Metasurface-Based Superoscillatory Lens
Authors: Li Jinxing , Yang Guohui , Yuan Yueyi , Wu Qun , Zhang Kuang 
Published: January 2022

The metasurface-based superoscillatory lens has been demonstrated to be effective in finely tailoring the wavefront of light to generate focal spots beyond the diffraction limit in the far-field that is capable of improving the resolution of the imaging system. In this paper, an ultra-thin (0.055 λ0) metasurface-based superoscillatory lens (SOL) that can generate a sub-diffraction optical needle with a long focal depth is proposed, which is constructed by ultra-thin chiral unit cells containing two metal split-ring resonators (SRR) with a 90° twisted angle difference cladded on both sides of a 1.5 mm-thick dielectric substrate, with a high linear cross-polarized transmission coefficient around 0.9 and full phase control capability at 11 GHz. Full-wave simulation shows that SOL generates a sub-diffraction optical needle within 10.5–11.5 GHz. At the center frequency, the focal depth is 281 mm (10.3 λ0) within 105–386 mm, the full width at half maximum (FWHM) is 18.5 mm (0.68 λ0), about 0.7 times the diffraction limit, generally consistent with the theoretical result. The proposed ultra-thin chiral metasurface-based SOL holds great potential in integrating into practical imaging applications for its simple fabrication, high efficiency, and low-profile advantages.