bluuebunny/crossref_metadata_2025_split huggingface dataset:
The ProteomeXchange consortium at 10 years: 2023 update
Authors: Deutsch Eric W , Bandeira Nuno , Perez-Riverol Yasset , Sharma Vagisha , Carver Jeremy J , Mendoza Luis , Kundu Deepti J , Wang Shengbo , Bandla Chakradhar , Kamatchinathan Selvakumar , Hewapathirana Suresh , Pullman Benjamin S , Wertz Julie , Sun Zhi , Kawano Shin , Okuda Shujiro , Watanabe Yu , MacLean Brendan , MacCoss Michael J , Zhu Yunping , Ishihama Yasushi , Vizcaíno Juan Antonio 
Published: November 2022

Abstract
Mass spectrometry (MS) is by far the most used experimental approach in high-throughput proteomics. The ProteomeXchange (PX) consortium of proteomics resources (http://www.proteomexchange.org) was originally set up to standardize data submission and dissemination of public MS proteomics data. It is now 10 years since the initial data workflow was implemented. In this manuscript, we describe the main developments in PX since the previous update manuscript in Nucleic Acids Research was published in 2020. The six members of the Consortium are PRIDE, PeptideAtlas (including PASSEL), MassIVE, jPOST, iProX and Panorama Public. We report the current data submission statistics, showcasing that the number of datasets submitted to PX resources has continued to increase every year. As of June 2022, more than 34 233 datasets had been submitted to PX resources, and from those, 20 062 (58.6%) just in the last three years. We also report the development of the Universal Spectrum Identifiers and the improvements in capturing the experimental metadata annotations. In parallel, we highlight that data re-use activities of public datasets continue to increase, enabling connections between PX resources and other popular bioinformatics resources, novel research and also new data resources. Finally, we summarise the current state-of-the-art in data management practices for sensitive human (clinical) proteomics data.
CAMPR4: a database of natural and synthetic antimicrobial peptides
Authors: Gawde Ulka , Chakraborty Shuvechha , Waghu Faiza Hanif , Barai Ram Shankar , Khanderkar Ashlesha , Indraguru Rishikesh , Shirsat Tanmay , Idicula-Thomas Susan 
Published: November 2022

Abstract
There has been an exponential increase in the design of synthetic antimicrobial peptides (AMPs) for its use as novel antibiotics. Synthetic AMPs are substantially enriched in residues with physicochemical properties known to be critical for antimicrobial activity; such as positive charge, hydrophobicity, and higher alpha helical propensity. The current prediction algorithms for AMPs have been developed using AMP sequences from natural sources and hence do not perform well for synthetic peptides. In this version of CAMP database, along with updating sequence information of AMPs, we have created separate prediction algorithms for natural and synthetic AMPs. CAMPR4 holds 24243 AMP sequences, 933 structures, 2143 patents and 263 AMP family signatures. In addition to the data on sequences, source organisms, target organisms, minimum inhibitory and hemolytic concentrations, CAMPR4 provides information on N and C terminal modifications and presence of unusual amino acids, as applicable. The database is integrated with tools for AMP prediction and rational design (natural and synthetic AMPs), sequence (BLAST and clustal omega), structure (VAST) and family analysis (PRATT, ScanProsite, CAMPSign). The data along with the algorithms of CAMPR4 will aid to enhance AMP research. CAMPR4 is accessible at http://camp.bicnirrh.res.in/.
Lithosphere architecture characterized by crust–mantle decoupling controls the formation of orogenic gold deposits
Authors: Hou Zengqian , Wang Qingfei , Zhang Haijiang , Xu Bo , Yu Nian , Wang Rui , Groves David I , Zheng Yuanchuan , Han Shoucheng , Gao Lei , Yang Lin 
Published: November 2022

ABSTRACTThis study, via combined analysis of geophysical and geochemical data, reveals a lithospheric architecture characterized by crust–mantle decoupling and vertical heat-flow conduits that control orogenic gold mineralization in the Ailaoshan gold belt on the southeastern margin of Tibet. The mantle seismic tomography indicates that the crust–mantle decoupled deformation, defined from previous seismic anisotropy analysis, was formed by upwelling and lateral flow of the asthenosphere, driven by deep subduction of the Indian continent. Our magnetotelluric and seismic images show both a vertical conductor across the Moho and high Vp/Vs anomalies both in the uppermost mantle and lowest crust, suggesting that crust–mantle decoupling promotes ponding of mantle-derived basic melts at the base of the crust via a heat-flow conduit. Noble gas isotope and halogen ratios of gold-related ore minerals indicate a mantle source of ore fluid. A rapid decrease in Cl/F ratios of lamprophyres under conditions of 1.2 GPa and 1050°C suggests that the ore fluid was derived from degassing of the basic melts. Similar lithospheric architecture is recognized in other orogenic gold provinces, implying analogous formational controls.
Introduction
Authors: Dews Peter 
Published: November 2022

Abstract
Since the last decades of the twentieth century, interest in developments in German philosophy immediately after Kant has increased the English-speaking world. Hegel has rightly been the focus of much attention, but so also have figures who were previously little known to anglophone philosophers. However, what became the predominant approach to Hegel and post-Kantian Idealism, associated with figures such as Robert Pippin and Terry Pinkard, was unfavorable—even hostile—to the work of Schelling, one of the three major German Idealists, besides Hegel and Fichte. This is because the approach relied on the historically implausible claim that Idealism was concerned with a “space of reasons,” or a normative domain disconnected from all ontological issues. But the atmosphere in the English-speaking world has now changed and basic metaphysical questions are back on the table. The time is right for a less-prejudiced evaluation of Schelling’s work, for a comprehensive comparison of his late philosophy with Hegel’s thought, and for an appreciation of his achievements as a philosophical diagnostician of modernity.
Agency and Absolute Identity
Authors: Dews Peter 
Published: November 2022

Abstract
During the later 1790s Schelling stakes out an original position in the debates concerning the relation between “rational will” (Wille), power of choice (Willkür), and freedom. Criticizing both Kant and Reinhold, he argues that our power of choice is the manifestation of the rational will under finite conditions. In the System of Transcendental Idealism (1800) he then seeks to reconcile this view with history’s teleological structure, regarded as the most general expression of rational will, arguing that aesthetic experience discloses a coincidence of free choice and rational necessity which philosophy cannot grasp theoretically. However, dissatisfaction with the dualism of “transcendental idealism” and the “philosophy of nature” leads to Schelling’s adoption of a philosophy of absolute identity, where the problem of freedom eventually emerges again for his now quasi-Spinozist position. He begins to address the problem in a new manner in the 1804 text, Philosophy and Religion, with the theorem of a “fall” (Abfall) from the absolute, which results in the finite, contingent world.
Beyond the Idea
Authors: Dews Peter 
Published: November 2022

Abstract
This chapter begins with a description of the structure of Schelling’s negative philosophy. It then seeks to elucidate the transition from negative to positive philosophy, as does Schelling himself, by discussing Kant’s theory of the “Ideal of Pure Reason” and his conception of absolute necessity. Schelling’s account of the move beyond the Idea generated by negative philosophy, and why this does not violate Kant’s prohibition on the derivation of existence from pure reason, is explained. The rationale for the transition beyond the absolute Idea at the end of Hegel’s Science of Logic is then compared with Schelling’s pivot from negative to positive philosophy. The chapter ends with a critique of James Kreines’ attempt to explain how Hegel can regard pure thought both as an absolute ground and as dependent on the existence of finite entities. It argues that Schelling’s late text, “On the Source of the Eternal Truths” also seeks, like Kreines, to uncouple epistemological from metaphysical monism, but proposes a more viable solution.
Reason and Revelation
Authors: Dews Peter 
Published: November 2022

Abstract
This chapter discusses Schelling’s Philosophy of Revelation, the second major historical component of his positive philosophy. It explores Schelling’s conception of the relation between reason and revelation, against the background of the emergence of the new sub-discipline, “philosophy of religion,” in the late eighteenth century. It then discusses Schelling’s view of Christianity as the definitive liberation of human consciousness from the mythological process. This account is compared with Hegel’s conception of the coming of Christianity as a similarly pivotal moment in human history. Schelling’s philosophical Christology is then compared with Hegel’s, with regard to their respective conceptions of freedom, and of the relation between the human and the divine. Hegel’s effort to shore up Christian doctrine philosophically, and his insistence on the role of religion in grounding the state in social existence, are compared with Schelling’s view of the trajectory of modern religious consciousness, in the light of his anticipation of what he terms “philosophical religion.”
Turn On, Tune In, Drift Off
Authors: Szabo Victor 
Published: November 2022

Abstract
Turn On, Tune In, Drift Off: Ambient Music’s Psychedelic Past rethinks the history and socioaesthetics of ambient music as a popular genre with roots in the psychedelic countercultures of the late twentieth century. It narrates how anglophone audio producers and DJs between the mid-1960s and century’s end commodified drone- and loop-based records as ambient audio: slow, spare, spacious audio sold as artful personal media for creating atmosphere, fostering contemplation, transforming awareness, and stilling the body. The book takes a trip through landmark ambient audio productions and related discourses, including marketing rhetoric, artist manifestos and interviews, and music criticism, that during this time plotted the conventions of what became known as ambient music. These productions include nature sounds records, experimental avant-garde pieces, “space music” radio, psychedelic and cosmic rock albums, electronic dance music compilations, and of course, explicitly “ambient” music, all of which popularized ambient audio through vivid atmospheric concepts. In paying special attention to the sound of ambient audio; to ambient audio’s relationship with the psychedelic, New Age, and rave countercultures of the United States and United Kingdom; and to the coincident coevolution of therapeutic audio and “head music” across alternative media and independent music markets, this history resituates ambient music as a hip highbrow framing and stylization of ongoing practices in crafting audio to alter consciousness, comportment, and mood. In so doing, Turn On, Tune In, Drift Off illuminates the social and aesthetic rifts and alliances informing one of today’s most popular musical experimentalisms.
A New Grammar of Dyirbal
Authors: Dixon R. M. W. 
Published: November 2022

AbstractWhen it was published, in 1972, Professor R. M. W. Dixon’s The Dyirbal Language of North Queensland had a decisive influence in several directions. By the inclusion of culturally informative examples from texts, it helped reveal the role of language in society. Its clear organisation became a benchmark for descriptive grammars. And the analysis of ergativity opened a new theoretical window. Dixon continued fieldwork with the remaining fluent speakers almost every year through 2001, building up a considerable corpus. He refined and extended the grammatical analysis, taking full account of recent advances in typological theory (for quite a few of which he had played a significant role). A New Grammar of Dyirbal is self-contained; it does not assume any familiarity with the 1972 grammar. A special feature is that, whereas in the earlier work structural features were explained through simple sentences crafted by linguist and speakers, in this present volume almost every example comes directly from a text. In this way, the book provides insight into Dyirbal traditional culture and beliefs. A pervasive characteristic of the language is its ‘ergative syntax’—the operation of an ‘S/O pivot’—a feature which recurs in a dozen chapters. There is a split-case system; two antipassive derivations, with contrastive meanings; one derivation which can have either applicative or causative effect; two relative clause constructions with a wider functional range than in most languages. And much more.
The House Where My Soul Lives
Authors: Graham Maryemma 
Published: November 2022

Abstract
This chapter moves on to Margaret Walker’s return to New Orleans. In 1934, the New Orleans in which Walker spent her first official year of adulthood was a more refined version of the Jim Crow South, more brutal and unforgiving. Yet she found her creative and moral center in the midst of these myriad conflicts, gravitating toward them, almost as a duty to herself. On the one hand, the situation with her parents wore heavily on her; on the other, the social realities of New Orleans stared her in the face. What made all of this unique was her attempt at self-definition through these conflicts, one not bound to her mother, her father, or a Jim Crow world. It was the first time she had felt compelled to mark her independence, which she did, not by speaking her mind, but rather by keeping her silence. The distinction she made was a crucial one for our understanding of the kind of poet that Margaret Walker became. Hers was an intellectual and artistic awakening as much as it was a physical one that affirmed her identity as a young Black woman. Art was her sense of connection, a convergence of individual will and creative spirit bound together by the needs and expectations of her family, community, and her race.
A Year of New Beginnings
Authors: Graham Maryemma 
Published: November 2022

Abstract
This chapter recounts how, on the day following the Japanese attack on Pearl Harbor, in December 1941, Sigismund Walker handed his daughter a telegram from President W. J. Trent of Livingstone College in Salisbury, North Carolina. Trent had learned about Margaret Walker through a fellow clergyman and invited her to join the faculty of the small Negro liberal arts college. The semester would start in January, and Walker was to report to school soon after the start of the new year. Still dependent upon her family, Walker was not able to buy a ticket to begin her new life and swallowed her pride as she turned to her mother for help. With borrowed money and a small suitcase of clothes, most of which she had brought with her from Chicago and Iowa, Walker again boarded the Jim Crow coach of the Illinois Central, going north. She was in good spirits but, having had teaching jobs disappear no sooner than she learned about them on multiple occasions, she understood there were no guarantees. Walker was coming to the rather startling revelation that who she was and what she wanted to be might have had little meaning in the 1940s within the larger context of an average Black person’s life.
Find Somebody to Love
Authors: Graham Maryemma 
Published: November 2022

Abstract
This chapter assesses how the excitement over her success was insufficient to mask the loneliness Margaret Walker saw on the horizon. Fame was not unwanted; she was fully prepared to embrace it and would have been disappointed had she not received such public attention. At twenty-seven, ordinarily she would have expected to be married. The provisions for single women to which she was subjected—like living in a dormitory reserved for unmarried women, most of whom gossiped too much for her—she saw as an infringement on the freedom she believed her education and achievement warranted. Walker, therefore, found herself implicated in a complex posture toward the protocols of race and womanhood not only unique to Black women in mid-twentieth century but especially to someone who believed that marriage was the fulfillment of womanhood. Whatever she did and wanted to do for the remainder of her career, Walker remained a modern “race woman,” breaking barriers, a leader and a model, someone who placed a priority on what contributions she expected to make for the benefit of her race. All personal feelings aside, Walker would have been well aware of her own history as a member of that critical mass of Black women who would be identified by that term.
Turn Loose and Sink or Swim
Authors: Graham Maryemma 
Published: November 2022

Abstract
This chapter highlights how the new conditions of Margaret Walker’s relationship with her husband made her comfortable enough to engage her work at Jackson State College differently. Between 1955 and 1960, she worked diligently, looking for opportunities to exercise her vision for Black education in the South. President Reddix was eager for her to take on challenging tasks, knowing that she had a unique set of skills, thought creatively, and had a penchant for perfection. Nonetheless, her public criticisms of her Black male colleagues, who were very close to him, gave Reddix reason to distrust her loyalty. She believed and did not hesitate to say that these men were inferior and threatened by her intelligence—an intelligence that she often demonstrated. Ultimately, she was beginning to formulate views that would result in important essays published in later years. Many of her ideas were intrinsic to her own education in Black and white religious institutions, and they were initially developed in the practice and teachings of her parents, who valued highly their own advancement and that of other Negroes.
Midwife to a Movement
Authors: Graham Maryemma 
Published: November 2022

Abstract
This chapter discusses Walker’s critical role in organizing and implementing the first major conference on Black Women Writers in 1973, a landmark event that became identified with a new “movement,” the growth of women’s writing beginning in the 1970s. Walker’s own ideas about feminism and womanism were still evolving, but she was clear that that needed to be a platform for discussing the present and future of black women’s writing in publishing, teaching, and advocacy. The Phillis Wheatley Festival represented all of that as it highlighted the importance of critical debates on making black women’s culture more visible. The event marked the beginning of Walker’s desire to claim a space for herself but its importance was in creating a community of artists who would go on to become the most important artists of our time.
The Outlaw Spirit Prevails
Authors: Graham Maryemma 
Published: November 2022

Abstract
This chapter details Margaret Walker'’s completion of Richard Wright'’s biography. The Wright book was her project for the 1980s. She saw herself experimenting again, this time using a genre with which she was much less familiar, biography. Driven more by vision and a desire to create a new dialogue through her creative work, she brought to biography the same compelling need to give attention to Southern Black reality in a new way. If her transition from her familiar journal prose to biographical narrative was not smooth, if she lacked the necessary comparative perspective, then it was due to the intellectual design of the book that she had carefully outlined years before she began writing it. The Wright biography was the book that took Walker the least amount of time to write, but its subject was most complicated. Jubilee had been a book waiting for her to write. Daemonic Genius was a book that she dared to write. She believed in what she was doing, and, therefore, never saw writing that book as a problem.
Intelligence and Decision Advantage in International Politics
Authors: Sims Jennifer E. 
Published: November 2022

Abstract
This chapter defines intelligence as competitive, purposeful learning that can be distinguished from lucky advantages arising from the distribution of uncertainty preexisting any conflict. This opening condition of relevant, relative knowledge is termed the terrain of uncertainty. The purpose of intelligence practice is to shift this terrain in a competitor’s favor. This relative awareness is termed intelligence-advantage, and competitors who engineer it will tend to have decision-advantages over opponents—that is, more options, more time for choosing, and thus better chances for securing their interests against others. A theory of intelligence is possible because the factors that lead to successful intelligence are identifiable, measurable, and buildable. By identifying and tracing winning decisions (how decision-makers knew what they knew, discounted for luck) in a variety of cases, we can discern winning and pathological intelligence practices. The cases were chosen because of their intrinsic interest as stories, their rich historical documentation, and their capacity to stress-test the theory. This theory of intelligence fits neatly within the frame of political realism, helping to explain why weaker powers sometimes win, foolish wars occur, and great powers accommodate some rising states but not others. Intelligence is thus a form of power that has shaped outcomes in international politics since long before intelligence institutions existed.
Intelligence for the Chase
Authors: Sims Jennifer E. 
Published: November 2022

Abstract
International politics has never been just about war and diplomacy, but also about busting international criminal networks, interdicting foreign assassins, and hunting weapons traffickers. Intelligence has special requirements for success in these kinds of contests. Secretary of War Stanton’s management of the hunt for President Abraham Lincoln’s assassin, John Wilkes Booth, offers insight into these requirements. Three lessons are learned from the federal government’s success: First, a hunt may not be what at first it seems to be, and so success may have little to do with capture. Second, even if an assassin acts alone or with limited aims, the hunter can label it war if it gains him intelligence or operational advantages. Third, complex contingencies, whether claimed as war or not, force decisions about which kind of winning (arrest, pacification, political support) matters most. Stanton knew his authorities would be strengthened if he framed the attack as an act of war; but to increase the ability of his hunters to chase Booth south, he needed the Confederacy to surrender. His choice to chase Booth using wartime authorities raised ethical and constitutional issues for intelligence and law enforcement long after Booth was caught and killed, with lasting effects on the capabilities of both.
Gaining Diplomatic Advantages before World War I
Authors: Sims Jennifer E. 
Published: November 2022

Abstract
Four key decisions were crucial to diplomatic outcomes before WWI: Austria-Hungary’s July Council of Ministers decision to launch a war on Serbia; Germany’s decision to provide her support; Britain’s decision at that time to look the other way; and Russia’s decision not to do so. A review of these decisions sheds light on a point often missed in the histories of this period: for three weeks or so, Austria sought to manipulate the decision-making of other great powers through policies that we would today call “information operations”; yet this effort, which initially had all the markings of an intelligence success, was not one. Austrian statesmen thought they knew what Germans were thinking when they did not, expected decision-makers in Britain to know more than they did, and wanted those in Russia to know less than they did. Any informational advantages gained were serendipitous, not engineered and, therefore, were slowly recognized and quickly lost.