bluuebunny/crossref_metadata_2025_split huggingface dataset:
Cell-controlled dynamic surfaces for skeletal stem cell growth and differentiation
Authors: Anderson Hilary J. , Sahoo Jugal Kishore , Wells Julia , van Nuffel Sebastiaan , Dhowre Hala S. , Oreffo Richard O. C. , Zelzer Mischa , Ulijn Rein V. , Dalby Matthew J. 
Published: May 2022

AbstractSkeletal stem cells (SSCs, or mesenchymal stromal cells typically referred to as mesenchymal stem cells from the bone marrow) are a dynamic progenitor population that can enter quiescence, self-renew or differentiate depending on regenerative demand and cues from their niche environment. However, ex vivo, in culture, they are grown typically on hard polystyrene surfaces, and this leads to rapid loss of the SSC phenotype. While materials are being developed that can control SSC growth and differentiation, very few examples of dynamic interfaces that reflect the plastic nature of the stem cells have, to date, been developed. Achieving such interfaces is challenging because of competing needs: growing SSCs require lower cell adhesion and intracellular tension while differentiation to, for example, bone-forming osteoblasts requires increased adhesion and intracellular tension. We previously reported a dynamic interface where the cell adhesion tripeptide arginine-glycine-aspartic acid (RGD) was presented to the cells upon activation by user-added elastase that cleaved a bulky blocking group hiding RGD from the cells. This allowed for a growth phase while the blocking group was in place and the cells could only form smaller adhesions, followed by an osteoblast differentiation phase that was induced after elastase was added which triggered exposure of RGD and subsequent cell adhesion and contraction. Here, we aimed to develop an autonomous system where the surface is activated according to the need of the cell by using matrix metalloprotease (MMP) cleavable peptide sequences to remove the blocking group with the hypothesis that the SSCs would produce higher levels of MMP as the cells reached confluence. The current studies demonstrate that SSCs produce active MMP-2 that can cleave functional groups on a surface. We also demonstrate that SSCs can grow on the uncleaved surface and, with time, produce osteogenic marker proteins on the MMP-responsive surface. These studies demonstrate the concept for cell-controlled surfaces that can modulate adhesion and phenotype with significant implications for stem cell phenotype modulation.
Response-related sensorimotor rhythms under scopolamine and MK-801 exposures in the touchscreen visual discrimination test in rats
Authors: Kostyalik Diána , Kelemen Kristóf , Lendvai Balázs , Hernádi István , Román Viktor , Lévay György 
Published: May 2022

AbstractThe human mu rhythm has been suggested to represent an important function in information processing. Rodent homologue rhythms have been assumed though no study has investigated them from the cognitive aspect yet. As voluntary goal-directed movements induce the desynchronization of mu rhythm, we aimed at exploring whether the response-related brain activity during the touchscreen visual discrimination (VD) task is suitable to detect sensorimotor rhythms and their change under cognitive impairment. Different doses of scopolamine or MK-801 were injected subcutaneously to rats, and epidural electroencephalogram (EEG) was recorded during task performance. Arciform ~ 10 Hz oscillations appeared during visual processing, then two characteristic alpha/beta desynchronization-resynchronization patterns emerged mainly above the sensorimotor areas, serving presumably different motor functions. Beyond causing cognitive impairment, both drugs supressed the touch-related upper alpha (10–15 Hz) reactivity for desynchronization. Reaction time predominantly correlated positively with movement-related alpha and beta power both in normal and impaired conditions. These results support the existence of a mu homologue rodent rhythm whose upper alpha component appeared to be modulated by cholinergic and glutamatergic mechanisms and its power change might indicate a potential EEG correlate of processing speed. The VD task can be utilized for the investigation of sensorimotor rhythms in rats.
CNN-based flow control device modelling on aerodynamic airfoils
Authors: Portal-Porras Koldo , Fernandez-Gamiz Unai , Zulueta Ekaitz , Ballesteros-Coll Alejandro , Zulueta Asier 
Published: May 2022

AbstractWind energy has become an important source of electricity generation, with the aim of achieving a cleaner and more sustainable energy model. However, wind turbine performance improvement is required to compete with conventional energy resources. To achieve this improvement, flow control devices are implemented on airfoils. Computational fluid dynamics (CFD) simulations are the most popular method for analyzing this kind of devices, but in recent years, with the growth of Artificial Intelligence, predicting flow characteristics using neural networks is becoming increasingly popular. In this work, 158 different CFD simulations of a DU91W(2)250 airfoil are conducted, with two different flow control devices, rotating microtabs and Gurney flaps, added on its Trailing Edge (TE). These flow control devices are implemented by using the cell-set meshing technique. These simulations are used to train and test a Convolutional Neural Network (CNN) for velocity and pressure field prediction and another CNN for aerodynamic coefficient prediction. The results show that the proposed CNN for field prediction is able to accurately predict the main characteristics of the flow around the flow control device, showing very slight errors. Regarding the aerodynamic coefficients, the proposed CNN is also capable to predict them reliably, being able to properly predict both the trend and the values. In comparison with CFD simulations, the use of the CNNs reduces the computational time in four orders of magnitude.
Formaldehyde exposure induces differentiation of regulatory T cells via the NFAT-mediated T cell receptor signalling pathway in Yucatan minipigs
Authors: Park Jeongsik , Kang Goo-Hwa , Kim Youngkyu , Lee Ju Young , Song Jeong Ah , Hwang Jeong Ho 
Published: May 2022

AbstractThe use of minipigs (Sus scrofa) as a platform for toxicological and pharmacological research is well established. In the present study, we investigated the effect of formaldehyde (FA) exposure on helper T cell-mediated splenic immune responses in Yucatan minipigs. The minipigs were exposed to different inhaled concentrations of FA (0, 2.16, 4.62, or 10.48 mg/m3) for a period of 2 weeks. Immune responses elicited by exposure to FA were determined by assessing physiological parameters, mRNA expression, and cytokine production. Additionally, the distribution of helper T cells and regulatory T (Treg) cells and expression of NFAT families, which are well-known T cell receptor signalling proteins associated with regulatory T cell development, were evaluated. Exposure to FA suppressed the expression of genes associated with Th1 and Th2 cells in minipigs in a concentration-dependent manner. The subsequent production of cytokines also declined post-FA exposure. Furthermore, exposure to FA induced the differentiation of CD4+ Foxp3+ Treg cells with divergent expression levels of NFAT1 and NFAT2. These results indicated that exposure to FA increased the Treg cell population via the NFAT-mediated T cell receptor signalling pathway, leading to suppression of effector T cell activity with a decline in T cell-related cytokine production.
Reconstructing SNP allele and genotype frequencies from GWAS summary statistics
Authors: Yang Zhiyu , Paschou Peristera , Drineas Petros 
Published: May 2022

AbstractThe emergence of genome-wide association studies (GWAS) has led to the creation of large repositories of human genetic variation, creating enormous opportunities for genetic research and worldwide collaboration. Methods that are based on GWAS summary statistics seek to leverage such records, overcoming barriers that often exist in individual-level data access while also offering significant computational savings. Such summary-statistics-based applications include GWAS meta-analysis, with and without sample overlap, and case-case GWAS. We compare performance of leading methods for summary-statistics-based genomic analysis and also introduce a novel framework that can unify usual summary-statistics-based implementations via the reconstruction of allelic and genotypic frequencies and counts (ReACt). First, we evaluate ASSET, METAL, and ReACt using both synthetic and real data for GWAS meta-analysis (with and without sample overlap) and find that, while all three methods are comparable in terms of power and error control, ReACt and METAL are faster than ASSET by a factor of at least hundred. We then proceed to evaluate performance of ReACt vs an existing method for case-case GWAS and show comparable performance, with ReACt requiring minimal underlying assumptions and being more user-friendly. Finally, ReACt allows us to evaluate, for the first time, an implementation for calculating polygenic risk score (PRS) for groups of cases and controls based on summary statistics. Our work demonstrates the power of GWAS summary-statistics-based methodologies and the proposed novel method provides a unifying framework and allows further extension of possibilities for researchers seeking to understand the genetics of complex disease.
Heat shock protein Grp78/BiP/HspA5 binds directly to TDP-43 and mitigates toxicity associated with disease pathology
Authors: François-Moutal Liberty , Scott David Donald , Ambrose Andrew J. , Zerio Christopher J. , Rodriguez-Sanchez Marina , Dissanayake Kumara , May Danielle G. , Carlson Jacob M. , Barbieri Edward , Moutal Aubin , Roux Kyle J. , Shorter James , Khanna Rajesh , Barmada Sami J. , McGurk Leeanne , Khanna May 
Published: May 2022

AbstractAmyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with no cure or effective treatment in which TAR DNA Binding Protein of 43 kDa (TDP-43) abnormally accumulates into misfolded protein aggregates in affected neurons. It is widely accepted that protein misfolding and aggregation promotes proteotoxic stress. The molecular chaperones are a primary line of defense against proteotoxic stress, and there has been long-standing interest in understanding the relationship between chaperones and aggregated protein in ALS. Of particular interest are the heat shock protein of 70 kDa (Hsp70) family of chaperones. However, defining which of the 13 human Hsp70 isoforms is critical for ALS has presented many challenges. To gain insight into the specific Hsp70 that modulates TDP-43, we investigated the relationship between TDP-43 and the Hsp70s using proximity-dependent biotin identification (BioID) and discovered several Hsp70 isoforms associated with TDP-43 in the nucleus, raising the possibility of an interaction with native TDP-43. We further found that HspA5 bound specifically to the RNA-binding domain of TDP-43 using recombinantly expressed proteins. Moreover, in a Drosophila strain that mimics ALS upon TDP-43 expression, the mRNA levels of the HspA5 homologue (Hsc70.3) were significantly increased. Similarly we observed upregulation of HspA5 in prefrontal cortex neurons from human ALS patients. Finally, overexpression of HspA5 in Drosophila rescued TDP-43-induced toxicity, suggesting that upregulation of HspA5 may have a compensatory role in ALS pathobiology.
Cytotoxic and antimicrobial activities of two new sesquiterpenoids from red sea brittle star Ophiocoma dentata
Authors: El Feky Shaymaa E. , Abd El Hafez Mohamed S. M. , Abd El Moneim Nadia A. , Ibrahim Hassan A. H. , Okbah Mohamed A. , Ata Athar , El Sedfy Amel S. , Hussein Ahmed 
Published: May 2022

AbstractBioactive compounds were extracted from a locally available brittle star; Ophiocoma dentata, collected from the Red Sea, Egypt. Two new sesquiterpenoids; 8, 11-epoxy-9(15)-himachaladiene-4-ol (O8-ophiocomane) and, 11-epoxy-9(15)-himachaladiene-4-ol (O7-ophiocomane) were isolated and characterized using appropriate techniques. Structure elucidation was estimated via 1D NMR, 2D NMR, FT-IR and mass spectroscopy analyses. The isolated compounds were tested for cytotoxic, antibacterial and antifungal activities. Pure compounds showed a dose dependent reduction in MCF-7 cells viability with LC50 of 103.5 and 59.5 μg/ml for compounds 1 and 2 respectively compared to the chemotherapeutic drug cisplatin (47.4 µg/ml). In vivo experiments showed that O. dentate extract significantly reduced tumor progression and improved hematological parameters and liver functions of tumor-bearing mice when administered either before or after tumor cells’ injection. The most remarkable antimicrobial effects of O. dentate crude extract were against Staphylococcus aureus, Vibrio damsela and Pseudomonasaeruginosa while the pure compounds showed activity against P. aeruginosa alone. Neither the crude extract nor the pure compounds have shown activity against Aeromonas hydrophila. These results indicates that O. dentata extract and newly isolated compounds have shown a promising cytotoxic, antiproliferative and antimicrobial activities that might be useful for pharmaceutical applications.
Preclinical trial of noncontact anthropometric measurement using IR-UWB radar
Authors: Kim Jinsup , Lee Won Hyuk , Kim Seung Hyun , Na Jae Yoon , Lim Young-Hyo , Cho Seok Hyun , Cho Sung Ho , Park Hyun-Kyung 
Published: May 2022

AbstractAnthropometric profiles are important indices for assessing medical conditions, including malnutrition, obesity, and growth disorders. Noncontact methods for estimating those parameters could have considerable value in many practical situations, such as the assessment of young, uncooperative infants or children and the prevention of infectious disease transmission. The purpose of this study was to investigate the feasibility of obtaining noncontact anthropometric measurements using the impulse-radio ultrawideband (IR-UWB) radar sensor technique. A total of 45 healthy adults were enrolled, and a convolutional neural network (CNN) algorithm was implemented to analyze data extracted from IR-UWB radar. The differences (root-mean-square error, RMSE) between values from the radar and bioelectrical impedance analysis (BIA) as a reference in the measurement of height, weight, and body mass index (BMI) were 2.78, 5.31, and 2.25, respectively; predicted data from the radar highly agreed with those from the BIA. The intraclass correlation coefficients (ICCs) were 0.93, 0.94, and 0.83. In conclusion, IR-UWB radar can provide accurate estimates of anthropometric parameters in a noncontact manner; this study is the first to support the radar sensor as an applicable method in clinical situations.
Efficient world-line-based quantum Monte Carlo method without Hubbard–Stratonovich transformation
Authors: Wang J. , Pan W. , Sun D. Y. 
Published: May 2022

AbstractBy precisely writing down the matrix element of the local Boltzmann operator ($${\mathrm{e}}^{-\tau h}$$

e

-
τ
h

, where $$h$$
h
is the Hermitian conjugate pairs of off-diagonal operators), we have proposed a new path integral formulation for quantum field theory and developed a corresponding Monte Carlo algorithm. With the current formula, the Hubbard–Stratonovich transformation is not necessary, accordingly the determinant calculation is not needed, which can improve the computational efficiency. The results show that, the simulation time has the square-law scaling with system sizes, which is comparable with the usual first-principles calculations. The current formula also improves the accuracy of the Suzuki–Trotter decomposition. As an example, we have studied the one-dimensional half-filled Hubbard model at finite temperature. The obtained results are in excellent agreement with the known solutions. The new formula and Monte Carlo algorithm could be applied to various studies in future.
Nanoporous and nano thickness film-forming bioactive composition for biomedical applications
Authors: Chevala Naga Thirumalesh , Kumar Lalit , Veetilvalappil Vimal , Mathew Aranjani Jesil , Paonam Bemma , Mohan Ganesh , Shastry Shamee , Balasubramanian Krishnan , Rao C. Mallikarjuna 
Published: May 2022

AbstractUnmanageable bleeding is one of the significant causes of mortality. Attaining rapid hemostasis ensures subject survivability as a first aid during combats, road accidents, surgeries that reduce mortality. Nanoporous fibers reinforced composite scaffold (NFRCS) developed by a simple hemostatic film-forming composition (HFFC) (as a continuous phase) can trigger and intensify hemostasis. NFRCS developed was based on the dragonfly wing structure's structural design. Dragonfly wing structure consists of cross-veins and longitudinal wing veins inter-connected with wing membrane to maintain the microstructural integrity. The HFFC uniformly surface coats the fibers with nano thickness film and interconnects the randomly distributed cotton gauge (Ct) (dispersed phase), resulting in the formation of a nanoporous structure. Integrating continuous and dispersed phases reduce the product cost by ten times that of marketed products. The modified NFRCS (tampon or wrist band) can be used for various biomedical applications. The in vivo studies conclude that the developed Cp NFRCS triggers and intensifies the coagulation process at the application site. The NFRCS could regulate the microenvironment and act at the cellular level due to its nanoporous structure, which resulted in better wound healing in the excision wound model.
Study on dynamic safety distance of multi-storey buildings on the top of loess slope
Authors: Wang Lili , Li Ning , Wang Ping 
Published: May 2022

AbstractIn view of the frequent occurrence of strong earthquakes and the actual characteristics of buildings built on the top of slopes in the loess region of Western China, the dynamic response and stability law of loess slope under the building load on the top of the slope are discussed by using the three-dimensional finite element numerical calculation method. Taking the slope safety factor, acceleration amplification coefficient, building permanent displacement and slope sliding range as evaluation indexes, the dynamic safety of buildings on the top of the slope under earthquake is analyzed, and the recommended value of dynamic safety distance between top building and slope shoulder is put forward. The results show that: firstly, affected by the amplification effect of slope elevation, the dynamic response of buildings on the top of slope is stronger than that of buildings under slope. At the same time, affected by the amplification effect of the free surface of the slope, the dynamic response amplitude of the building is negatively correlated with the distance from the slope shoulder. Secondly, the horizontal acceleration ratio between the top building and the under building is the largest at the height of 3–6 m, indicating that the multi-storey building with pile raft foundation is most prone to damage at this height. Thirdly, the dynamic safety distance of multi-storey buildings with pile raft foundation located on the top of loess slope with slope height H ≤ 30 m and slope gradient 25° ≤ α ≤ 70° can be 24 m.
Chasing genetic correlation breakers to stimulate population resilience to climate change
Authors: Klápště Jaroslav , Telfer Emily J , Dungey Heidi S , Graham Natalie J 
Published: May 2022

AbstractGlobal climate change introduces new combinations of environmental conditions, which is expected to increase stress on plants. This could affect many traits in multiple ways that are as yet unknown but will likely require the modification of existing genetic relationships among functional traits potentially involved in local adaptation. Theoretical evolutionary studies have determined that it is an advantage to have an excess of recombination events under heterogeneous environmental conditions. Our study, conducted on a population of radiata pine (Pinus radiata D. Don), was able to identify individuals that show high genetic recombination at genomic regions, which potentially include pleiotropic or collocating QTLs responsible for the studied traits, reaching a prediction accuracy of 0.80 in random cross-validation and 0.72 when whole family was removed from the training population and predicted. To identify these highly recombined individuals, a training population was constructed from correlation breakers, created through tandem selection of parents in the previous generation and their consequent mating. Although the correlation breakers showed lower observed heterogeneity possibly due to direct selection in both studied traits, the genomic regions with statistically significant differences in the linkage disequilibrium pattern showed higher level of heretozygosity, which has the effect of decomposing unfavourable genetic correlation. We propose undertaking selection of correlation breakers under current environmental conditions and using genomic predictions to increase the frequency of these ’recombined’ individuals in future plantations, ensuring the resilience of planted forests to changing climates. The increased frequency of such individuals will decrease the strength of the population-level genetic correlations among traits, increasing the opportunity for new trait combinations to be developed in the future.
Need for cognition does not account for individual differences in metacontrol of decision making
Authors: Bolenz Florian , Profitt Maxine F. , Stechbarth Fabian , Eppinger Ben , Strobel Alexander 
Published: May 2022

AbstractHumans show metacontrol of decision making, that is they adapt their reliance on decision-making strategies toward situational differences such as differences in reward magnitude. Specifically, when higher rewards are at stake, individuals increase reliance on a more accurate but cognitively effortful strategy. We investigated whether the personality trait Need for Cognition (NFC) explains individual differences in metacontrol. Based on findings of cognitive effort expenditure in executive functions, we expected more metacontrol in individuals low in NFC. In two independent studies, metacontrol was assessed by means of a decision-making task that dissociates different reinforcement-learning strategies and in which reward magnitude was manipulated across trials. In contrast to our expectations, NFC did not account for individual differences in metacontrol of decision making. In fact, a Bayesian analysis provided moderate to strong evidence against a relationship between NFC and metacontrol. Beyond this, there was no consistent evidence for relationship between NFC and overall model-based decision making. These findings show that the effect of rewards on the engagement of effortful decision-making strategies is largely independent of the intrinsic motivation for engaging in cognitively effortful tasks and suggest a differential role of NFC for the regulation of cognitive effort in decision making and executive functions.