bluuebunny/crossref_metadata_2025_split huggingface dataset:
Impact of Tropical Cyclones on Pelagic Sargassum
Authors: Sosa‐Gutierrez Rosmery , Jouanno Julien , Berline Leo , Descloitres Jacques , Chevalier Cristèle 
Published: March 2022

AbstractThe strong proliferation of holopelagic Sargassum in the Tropical Atlantic from 2011, raises many questions on the environmental factors controlling their growth and decay at interannual, seasonal, and intraseasonal scales. In this work, we specifically investigate the response of the Sargassum aggregations to high wind events such as those found in Tropical Cyclones (TCs). The evolution of Sargassum coverage obtained from MODIS observations in the north tropical Atlantic Ocean (from 0 to 30°N and from 0 to 100°W) was analyzed under 86 historical paths of TCs and tropical storms from 2011 to 2020 that crossed Sargassum aggregations. Our results show on average a 40% drop in Sargassum coverage under TC trajectories, which can exceed 60% for the most intense TCs. We associate this drop with a sinking of Sargassum toward the deep ocean. Our estimates suggest that TCs contribute to the seasonal decay of Sargassum biomass from August to November.
Shear Wave Splitting Across Antarctica: Implications for Upper Mantle Seismic Anisotropy
Authors: Lucas Erica M. , Nyblade Andrew A. , Accardo Natalie J. , Lloyd Andrew J. , Wiens Douglas A. , Aster Richard C. , Wilson Terry J. , Dalziel Ian W. , Stuart Graham W. , O’Donnell John Paul , Winberry J. Paul , Huerta Audrey D. 
Published: March 2022

AbstractWe examine upper mantle anisotropy across the Antarctic continent using 102 new shear wave splitting measurements obtained from teleseismic SKS, SKKS, and PKS phases combined with 107 previously published results. For the new measurements, an eigenvalue technique is used to estimate the fast polarization direction and delay time for each phase arrival, and high‐quality measurements are stacked to determine the best‐fit splitting parameters at each seismic station. The ensemble of splitting measurements shows largely NE‐SW‐oriented fast polarization directions across Antarctica, with a broadly clockwise rotation in polarization directions evident moving from west to east across the continent. Although the first‐order pattern of NE‐SW‐oriented polarization directions is suggestive of a single plate‐wide source of anisotropy, we argue the observed pattern of anisotropy more likely arises from regionally variable contributions of both lithospheric and sub‐lithospheric mantle sources. Anisotropy observed in the interior of East Antarctica, a region underlain by thick lithosphere, can be attributed to relict fabrics associated with Precambrian tectonism. In contrast, anisotropy observed in coastal East Antarctica, the Transantarctic Mountains (TAM), and across much of West Antarctica likely reflects both lithospheric and sub‐lithospheric mantle fabrics. While sub‐lithospheric mantle fabrics are best associated with either plate motion‐induced asthenospheric flow or small‐scale convection, lithospheric mantle fabrics in coastal East Antarctica, the TAM, and West Antarctica generally reflect Jurassic—Cenozoic tectonic activity.
Dynamics and Near‐Field Surface Motions of Transitioned Supershear Laboratory Earthquakes in Thrust Faults
Authors: Tal Yuval , Rubino Vito , Rosakis Ares J. , Lapusta Nadia 
Published: March 2022

AbstractWe study how the asymmetric geometry of thrust faults affects the dynamics of supershear ruptures and their associated trailing Rayleigh ruptures as they interact with the free surface, and investigate the resulting near‐field ground motions. Earthquakes are mimicked by propagating laboratory ruptures along a frictional interface with a 61° dip angle. Using an experimental technique that combines ultrahigh‐speed photography with digital image correlation, we produce sequences of full‐field evolving measurements of particle displacements and velocities. Our full‐field measurement capability allows us to confirm and quantify the asymmetry between the experimental motions of the hanging and footwalls, with larger velocity magnitudes occurring at the hanging wall. Interestingly, because the motion of the hanging wall is generally near‐vertical, while that of the footwall is at dip direction shallower than the dip angle of the fault, the horizontal surface velocity components are found to be larger at the footwall than at the hanging wall. The attenuation in surface velocity with distance from the fault trace is generally larger at the hanging wall than at the footwall and it is more pronounced in the vertical component than in the horizontal one. Measurements of the rotations in surface motions confirm experimentally that the interaction of the rupture with the free surface can be interpreted through a torqueing mechanism that leads to reduction in normal stress near the free surface for thrust earthquakes. Nondimensional analysis shows that the experimental measurements are consistent with larger‐scale numerical simulations as well as field observations from thrust earthquakes.
Spatial collagen stiffening promotes collective breast cancer cell invasion by reinforcing extracellular matrix alignment
Authors: Koorman Thijs , Jansen Karin A. , Khalil Antoine , Haughton Peter D. , Visser Daan , Rätze Max A. K. , Haakma Wisse E. , Sakalauskaitè Gabrielè , van Diest Paul J. , de Rooij Johan , Derksen Patrick W. B. 
Published: March 2022

AbstractThe tumor micro-environment often contains stiff and irregular-bundled collagen fibers that are used by tumor cells to disseminate. It is still unclear how and to what extent, extracellular matrix (ECM) stiffness versus ECM bundle size and alignment dictate cancer cell invasion. Here, we have uncoupled Collagen-I bundling from stiffness by introducing inter-collagen crosslinks, combined with temperature induced aggregation of collagen bundling. Using organotypic models from mouse invasive ductal and invasive lobular breast cancers, we show that increased collagen bundling in 3D induces a generic increase in breast cancer invasion that is independent of migration mode. However, systemic collagen stiffening using advanced glycation end product (AGE) crosslinking prevents collective invasion, while leaving single cell invasion unaffected. Collective invasion into collagen matrices by ductal breast cancer cells depends on Lysyl oxidase-like 3 (Loxl3), a factor produced by tumor cells that reinforces local collagen stiffness. Finally, we present clinical evidence that collectively invading cancer cells at the invasive front of ductal breast carcinoma upregulate LOXL3. By uncoupling the mechanical, chemical, and structural cues that control invasion of breast cancer in three dimensions, our data reveal that spatial control over stiffness and bundling underlie collective dissemination of ductal-type breast cancers.
Targeted Tshz3 deletion in corticostriatal circuit components segregates core autistic behaviors
Authors: Caubit Xavier , Gubellini Paolo , Roubertoux Pierre L. , Carlier Michèle , Molitor Jordan , Chabbert Dorian , Metwaly Mehdi , Salin Pascal , Fatmi Ahmed , Belaidouni Yasmine , Brosse Lucie , Kerkerian-Le Goff Lydia , Fasano Laurent 
Published: March 2022

AbstractWe previously linkedTSHZ3haploinsufficiency to autism spectrum disorder (ASD) and showed that embryonic or postnatalTshz3deletion in mice results in behavioral traits relevant to the two core domains of ASD, namely social interaction deficits and repetitive behaviors. Here, we provide evidence that cortical projection neurons (CPNs) and striatal cholinergic interneurons (SCINs) are two main and complementary players in the TSHZ3-linked ASD syndrome. In the cerebral cortex, TSHZ3 is expressed in CPNs and in a proportion of GABAergic interneurons, but not in cholinergic interneurons or glial cells. In the striatum, TSHZ3 is expressed in all SCINs, while its expression is absent or partial in the other main brain cholinergic systems. We then characterized two new conditional knockout (cKO) models generated by crossingTshz3flox/floxwithEmx1-Cre(Emx1-cKO) orChat-Cre(Chat-cKO) mice to decipher the respective role of CPNs and SCINs.Emx1-cKOmice show altered excitatory synaptic transmission onto CPNs and impaired plasticity at corticostriatal synapses, with neither cortical neuron loss nor abnormal layer distribution. These animals present social interaction deficits but no repetitive patterns of behavior.Chat-cKOmice exhibit no loss of SCINs but changes in the electrophysiological properties of these interneurons, associated with repetitive patterns of behavior without social interaction deficits. Therefore, dysfunction in either CPNs or SCINs segregates with a distinct ASD behavioral trait. These findings provide novel insights onto the implication of the corticostriatal circuitry in ASD by revealing an unexpected neuronal dichotomy in the biological background of the two core behavioral domains of this disorder.
ARL6IP5 reduces cisplatin-resistance by suppressing DNA repair and promoting apoptosis pathways in ovarian carcinoma
Authors: Kim Ji-Ye , Bahar Entaz , Lee Jung-Yun , Chang Sunhee , Kim Se Hoon , Park Eun Young , Do Sung-Im , Yoon Hyonok , Kim Hyun-Soo 
Published: March 2022

AbstractOvarian carcinoma (OC) is the most lethal gynecological malignancy due to frequent recurrence resulting from cisplatin-resistance. ARL6IP5 is a novel gene implicated to suppress cisplatin-resistance by activating apoptosis and inhibiting DNA repair through XRCC1 and PARP1. We investigated the clinicopathological and prognostic significance of the immunohistochemical ARL6IP5 expression on 79 post-chemotherapy OC patient tissue samples; in vitro, the effect of ARL6IP5 overexpression (OE) and knockdown (KD) on cancer hallmark functions and the effect of ARL6IP5 on the expression of DNA repair and apoptosis-related proteins were observed in OC cells and their cisplatin-resistant (CisR) counterparts. ARL6IP5 expression was significantly associated with chemotherapeutic response and was an independent prognosticator of progression-free and overall survival of high-grade serous OC patients. ARL6IP5-OE decreased cellular proliferation, invasion, migration, adhesion, and increased apoptosis (p < 0.05); the opposite was observed for ARL6IP5-KD. Notably, ARL6IP5-OE reduced cisplatin-resistance of both OC and CisR OC cells, while ARL6IP5-KD increased cisplatin-resistance (p < 0.05). ARL6IP5-OE suppressed the expressions of DNA repair proteins and increased those of pro-apoptotic proteins; the opposite was observed for ARL6IP5-KD. The recombinant ARL6IP5 protein (rARL6IP5) had the greatest apoptotic effect among cisplatin and olaparib, in both OC and CisR OC cells; moreover, rARL6IP5 was the only single agent in CisR OC cells to retain higher apoptotic efficacy compared with control (p < 0.05), indicating that the apoptotic pathway influenced by rARL6IP5 remained effective in CisR OC cells compared to cisplatin and olaparib. In conclusion, we demonstrated that ARL6IP5 is an independent prognosticator of OC patients with cellular functions of a tumor-suppressor, possibly influencing the development of cisplatin-resistance and progression of OC cells through regulation of DNA repair and apoptosis. rARL6IP5 had significantly greater apoptotic efficacy compared to conventional chemotherapeutic agents in both OC and CisR OC cells, suggesting that ARL6IP5 may be a valuable novel chemotherapeutic against CisR OC.
MYC inhibition reprograms tumor immune microenvironment by recruiting T lymphocytes and activating the CD40/CD40L system in osteosarcoma
Authors: Jiang Kuo , Zhang Qianfeng , Fan Yong , Li Jia , Zhang Jitao , Wang Wentao , Fan Jinzhu , Guo Yunshan , Liu Shichang , Hao Dingjun , Wang Yongxiang , Wang Lei , Shan Lequn 
Published: March 2022

AbstractThe efficacy of immune checkpoint blockade (ICB) therapy depends on sufficient infiltration and activation of primed tumor-specific cytotoxic T lymphocytes (CTLs) in the tumor microenvironment. However, many tumor types, including osteosarcoma, mainly display immune-desert or immune-excluded phenotypes, which are characterized by a lack of tumor-infiltrating lymphocytes and a poor response to ICB monotherapy. Thus, novel therapeutic strategies are urgently needed to surmount these obstacles. In this study, we found that the expression of the c-Myc oncogene is negatively correlated with the T cell infiltration rate in osteosarcoma. Pharmacological inhibition of c-Myc with JQ-1 significantly reduced tumor burden and improved overall survival in an immunocompetent syngeneic murine model of osteosarcoma (K7M2). A mechanistic study revealed that JQ-1 administration dramatically reprogrammed the tumor immune microenvironment (TIME) within K7M2 tumors. On the one hand, JQ-1 can promote T cell trafficking into tumors by increasing the expression and secretion of T cell-recruiting chemokines. On the other hand, JQ-1 is capable of facilitating crosstalk between antigen-presenting dendritic cells and T cells through the CD40/CD40L costimulatory pathway, leading to activation of tumor-specific CTLs. Combined treatment with anti-PD-1 antibody and JQ-1 resulted in more pronounced tumor regression than either monotherapy, showing an obvious synergistic effect. These findings uncover for the first time that c-Myc inhibition can promote T cell infiltration and activation in osteosarcoma in multiple ways, delivering a one-two punch for modulating TIME. The present work also provides the basis for establishing c-Myc inhibitor and ICB coadministration as a novel therapeutic regimen for patients with osteosarcoma.
CRISPR signal conductor 2.0 for redirecting cellular information flow
Authors: Zhan Yonghao , Li Aolin , Cao Congcong , Liu Yuchen 
Published: March 2022

AbstractA key challenge in designing intelligent artificial gene circuits is generating flexible connections between arbitrary components and directly coupling them with endogenous signaling pathways. The CRISPR signal conductor based on conditionally inducible artificial transcriptional regulators can link classic cellular protein signals with targeted gene expression, but there are still problems with multiple signal processing and gene delivery. With the discovery and characterization of new Cas systems and long noncoding RNA (lncRNA) functional motifs, and because of the compatibility of guide RNA with noncoding RNA elements at multiple sites, it is increasingly possible to solve these problems. In this study, we developed CRISPR signal conductor version 2.0 by integrating various lncRNA functional motifs into different parts of the crRNA in the CRISPR-dCasΦ system. This system can directly regulate the expression of target genes by recruiting cellular endogenous transcription factors and efficiently sense a variety of protein signals that are not detected by a classical synthetic system. The new system solved the problems of background leakage and insensitive signaling responses and enabled the construction of logic gates with as many as six input signals, which can be used to specifically target cancer cells. By rewiring endogenous signaling networks, we further demonstrated the effectiveness and biosafety of this system for in vivo cancer gene therapy.
Comprehensive evaluation of deconvolution methods for human brain gene expression
Authors: Sutton Gavin J. , Poppe Daniel , Simmons Rebecca K. , Walsh Kieran , Nawaz Urwah , Lister Ryan , Gagnon-Bartsch Johann A. , Voineagu Irina 
Published: March 2022

AbstractTranscriptome deconvolution aims to estimate the cellular composition of an RNA sample from its gene expression data, which in turn can be used to correct for composition differences across samples. The human brain is unique in its transcriptomic diversity, and comprises a complex mixture of cell-types, including transcriptionally similar subtypes of neurons. Here, we carry out a comprehensive evaluation of deconvolution methods for human brain transcriptome data, and assess the tissue-specificity of our key observations by comparison with human pancreas and heart. We evaluate eight transcriptome deconvolution approaches and nine cell-type signatures, testing the accuracy of deconvolution using in silico mixtures of single-cell RNA-seq data, RNA mixtures, as well as nearly 2000 human brain samples. Our results identify the main factors that drive deconvolution accuracy for brain data, and highlight the importance of biological factors influencing cell-type signatures, such as brain region and in vitro cell culturing.
A high-performance capillary-fed electrolysis cell promises more cost-competitive renewable hydrogen
Authors: Hodges Aaron , Hoang Anh Linh , Tsekouras George , Wagner Klaudia , Lee Chong-Yong , Swiegers Gerhard F. , Wallace Gordon G. 
Published: March 2022

AbstractRenewable, or green, hydrogen will play a critical role in the decarbonisation of hard-to-abate sectors and will therefore be important in limiting global warming. However, renewable hydrogen is not cost-competitive with fossil fuels, due to the moderate energy efficiency and high capital costs of traditional water electrolysers. Here a unique concept of water electrolysis is introduced, wherein water is supplied to hydrogen- and oxygen-evolving electrodes via capillary-induced transport along a porous inter-electrode separator, leading to inherently bubble-free operation at the electrodes. An alkaline capillary-fed electrolysis cell of this type demonstrates water electrolysis performance exceeding commercial electrolysis cells, with a cell voltage at 0.5 A cm−2 and 85 °C of only 1.51 V, equating to 98% energy efficiency, with an energy consumption of 40.4 kWh/kg hydrogen (vs. ~47.5 kWh/kg in commercial electrolysis cells). High energy efficiency, combined with the promise of a simplified balance-of-plant, brings cost-competitive renewable hydrogen closer to reality.
Stereodivergent propargylic alkylation of enals via cooperative NHC and copper catalysis
Authors: Wen Yu-Hua , Zhang Zi-Jing , Li Shuai , Song Jin , Gong Liu-Zhu 
Published: March 2022

AbstractDespite that asymmetric stereodivergent synthesis has experienced great success to provide unusual processes for the creation of chirality complexity, concepts appliable to asymmetric stereodivergent catalysis are still limited. The dependence on the unusual capacity of each catalyst to precisely control the reactive site planar in the region poses unparalleled constraints on this field. Here, we first demonstrate that the chiral Cu-allenylidene species can participate in the stereodivergent propargylic alkylation of enals, in concert with chiral N-heterocyclic carbenes (NHCs). Thus, all four stereoisomers were obtained with excellent enantioselectivity and diastereoselectivity (up to >99% e.e. and >95:5 d.r.) from the same starting materials by simply altering chiral Cu-Pybox complex and NHC combinations. The rich chemistry workable in the products enables the structurally diverse synthesis of chiral functional molecules and holds great potential in alkaloid synthesis, as showcased by the preparation of the key building block to access (-)-perophoramidine.
In situ photodeposition of platinum clusters on a covalent organic framework for photocatalytic hydrogen production
Authors: Li Yimeng , Yang Li , He Huijie , Sun Lei , Wang Honglei , Fang Xu , Zhao Yanliang , Zheng Daoyuan , Qi Yu , Li Zhen , Deng Weiqiao 
Published: March 2022

AbstractPhotocatalytic hydrogen production has been considered a promising approach to obtain green hydrogen energy. Crystalline porous materials have arisen as key photocatalysts for efficient hydrogen production. Here, we report a strategy to in situ photodeposit platinum clusters as cocatalyst on a covalent organic framework, which makes it an efficient photocatalyst for light-driven hydrogen evolution. Periodically dispersed adsorption sites of platinum species are constructed by introducing adjacent hydroxyl group and imine-N in the region of the covalent organic framework structural unit where photogenerated electrons converge, leading to the in situ reduction of the adsorbed platinum species into metal clusters by photogenerated electrons. The widespread platinum clusters on the covalent organic framework expose large active surface and greatly facilitate the electron transfer, finally contributing to a high photocatalytic hydrogen evolution rate of 42432 μmol g−1 h−1 at 1 wt% platinum loading. This work provides a direction for structural design on covalent organic frameworks to precisely manipulate cocatalyst morphologies and positions at the atomic level for developing efficient photocatalysts.
Corrosion and metal release characterization of stainless steel 316L weld zones in whey protein solution
Authors: Varmaziar Sadegh , Atapour Masoud , Hedberg Yolanda S. 
Published: March 2022

AbstractStainless steel ASTM 316 L is often used in the food industry as contact material with protein-rich dairy products. It has to be welded at some locations for many of these contact materials. This study aimed at i) determining any combined effects of the presence of whey protein (WP) and welding-induced weaknesses on corrosion and metal release, and ii) determining the appropriate welding procedure and filler metal (316 L, 309 L, 312). All weld metals (WMs) showed a higher pitting corrosion susceptibility as compared to the base metal (BM). Under induced friction (stirring), WP significantly enhanced the metal release from all materials, which was accelerated between 1 and 3 days of exposure. Post-imaging indicated pits. 312-WM released significantly higher amounts of metals as compared to the BM and the other WMs. This study indicated that the presence of WP, friction, and weldment-induced corrosion susceptibilities could synergistically cause metal release and corrosion of food contact materials.
Change in the incidence of Parkinson’s disease in a large UK primary care database
Authors: Okunoye Olaitan , Marston Louise , Walters Kate , Schrag Anette 
Published: March 2022

AbstractParkinson’s disease (PD) has the fastest rising prevalence of all neurodegenerative diseases worldwide. However, it is unclear whether its incidence has increased after accounting for age and changes in diagnostic patterns in the same population. We conducted a cohort study in individuals aged ≥50 years within a large UK primary care database between January 2006 and December 2016. To account for possible changes in diagnostic patterns, we calculated the incidence of PD using four case definitions with different stringency derived from the combination of PD diagnosis, symptoms, and treatment. Using the broadest case definition, the incidence rate (IR) per 100,000 person years at risk (PYAR) was 149 (95% CI 143.3–155.4) in 2006 and 144 (95% CI 136.9–150.7) in 2016. In conclusion, the incidence of PD in the UK remained stable between 2006 and 2016, when accounting for age and diagnostic patterns, suggesting no major change in underlying risk factors for PD during this time period in the UK.
Mutant LRRK2 in lymphocytes regulates neurodegeneration via IL-6 in an inflammatory model of Parkinson’s disease
Authors: Kozina Elena , Byrne Matthew , Smeyne Richard Jay 
Published: March 2022

AbstractMutations in a number of genes contribute to development of Parkinson’s disease (PD), including several within the LRRK2 gene. However, little is known about the signals that underlie LRRK2-mediated neuronal loss. One clue resides in the finding that the neurodegenerative cascades emanate from signals arising from the peripheral immune system. Here, using two chimeric mouse models, we demonstrate that: 1) the replacement of mutant LRRK2 with wt form of the protein in T- and B-lymphocytes diminishes LPS-mediated inflammation and rescues the SNpc DA neuron loss in the mutant LRRK2 brain; 2) the presence of G2019S or R1441G LRRK2 mutation in lymphocytes alone is sufficient for LPS-induced DA neuron loss in the genotypically wt brain; and 3) neutralization of peripheral IL-6 overproduction prevents the SNpc DA neuron loss in LPS-treated mutant LRRK2 mice. These results represent a major paradigm shift in our understanding of PD pathogenesis and suggest that immune dysfunction in some forms of familial PD may have primacy over the CNS as the initiating site of the disorder.