bluuebunny/crossref_metadata_2025_split huggingface dataset:
The sodium–glucose cotransporter 2 inhibitor ipragliflozin improves liver function and insulin resistance in Japanese patients with type 2 diabetes
Authors: Okura Tsuyoshi , Fujioka Yohei , Nakamura Risa , Kitao Sonoko , Ito Yuichi , Anno Mari , Matsumoto Kazuhisa , Shoji Kyoko , Matsuzawa Kazuhiko , Izawa Shoichiro , Okura Hiroko , Ueta Etsuko , Kato Masahiko , Imamura Takeshi , Taniguchi Shin-ichi , Yamamoto Kazuhiro 
Published: February 2022

AbstractSodium–glucose cotransporter 2 inhibitor (SGLT2i) treatment is a therapeutic approach for type 2 diabetes mellitus (T2DM). Some reports have shown that SGLT2i treatment improves insulin resistance; however, few studies have evaluated insulin resistance by the glucose clamp method. Hepatic insulin clearance (HIC) is a new pathophysiological mechanism of T2DM. The effect of SGLT2i treatment on hepatic insulin clearance and insulin resistance is not well known. We investigated the effect of SGLT2i treatment on insulin resistance, insulin secretion, incretin levels, body composition, and hepatic insulin clearance. We conducted a meal tolerance test (MTT) and a hyperinsulinemic-euglycemic clamp test in 9 T2DM patients. Ipragliflozin (50 mg/day) was administered, and the MTT and clamp test were performed after 4 months. We calculated HIC as the postprandial C-peptide AUC-to-insulin AUC ratio. We also measured GLP-1, GIP, and glucagon levels during the MTT. Body weight and HbA1c were decreased, although not significantly, after 4 months of treatment. Postprandial glucose, fasting insulin and postprandial insulin were significantly decreased. Insulin resistance with the glucose clamp was not changed, but the HOMA-IR and insulin sensitivity indices were significantly improved. Incretin and glucagon levels were not changed. Hepatic insulin clearance was significantly increased, but whole-body insulin clearance was not changed. The FIB-4 index and fatty liver index were significantly reduced. The HOMA-beta and insulinogenic indices were not changed, but the C-peptide index was significantly increased. Although the number of patients was small, these results suggested that SGLT2i treatment improved liver function, decreased hepatic insulin resistance, and increased hepatic insulin clearance, despite the small weight reduction.
Wave attenuation through forests under extreme conditions
Authors: van Wesenbeeck Bregje K. , Wolters Guido , Antolínez José A. A. , Kalloe Sudarshini A. , Hofland Bas , de Boer Wiebe P. , Çete Ceylan , Bouma Tjeerd J. 
Published: February 2022

AbstractWorldwide, communities are facing increasing flood risk, due to more frequent and intense hazards and rising exposure through more people living along coastlines and in flood plains. Nature-based Solutions (NbS), such as mangroves, and riparian forests, offer huge potential for adaptation and risk reduction. The capacity of trees and forests to attenuate waves and mitigate storm damages receives massive attention, especially after extreme storm events. However, application of forests in flood mitigation strategies remains limited to date, due to lack of real-scale measurements on the performance under extreme conditions. Experiments executed in a large-scale flume with a willow forest to dissipate waves show that trees are hardly damaged and strongly reduce wave and run-up heights, even when maximum wave heights are up to 2.5 m. It was observed for the first time that the surface area of the tree canopy is most relevant for wave attenuation and that the very flexible leaves limitedly add to effectiveness. Overall, the study shows that forests can play a significant role in reducing wave heights and run-up under extreme conditions. Currently, this potential is hardly used but may offer future benefits in achieving more adaptive levee designs.
Comparison of clinical outcomes between carbon ion radiotherapy and X-ray radiotherapy for reirradiation in locoregional recurrence of rectal cancer
Authors: Chung Seung Yeun , Takiyama Hirotoshi , Kang Jae Hyun , Chang Jee Suk , Min Byung Soh , Tsuji Hiroshi , Yamada Shigeru , Koom Woong Sub 
Published: February 2022

AbstractCarbon ion radiotherapy (CIRT) has garnered interest for the treatment of locoregional rectal cancer recurrence. No study has compared CIRT and X-ray radiotherapy (XRT) for reirradiation (reRT) in such cases. We analyzed and compared the clinical outcomes such as local control, overall survival, and late toxicity rate between CIRT and XRT, for treating locoregional rectal cancer recurrence. Patients with rectal cancer who received reRT to the pelvis by CIRT or XRT from March 2005 to July 2019 were included. The CIRT treatment schedule was 70.4 Gy (relative biological effectiveness) in 16 fractions. For the XRT group, the median reRT dose was 50 Gy (range 25–62.5 Gy) with a median of 25 fractions (range 3–33). Thirty-five and 31 patients received CIRT and XRT, respectively. Tumour and treatment characteristics such as recurrence location and chemotherapy treatment differed between the two groups. CIRT showed better control of local recurrence (adjusted hazard ratio [HR] 0.17; p = 0.002), better overall survival (HR 0.30; p = 0.004), and lower severe late toxicity rate (HR 0.15; p = 0.015) than XRT. CIRT was effective for treating locoregional rectal cancer recurrence, with high rates of local control and survival, and a low late severe toxicity rate.
Integrated physiological, proteomic, and metabolomic analyses of pecan cultivar ‘Pawnee’ adaptation to salt stress
Authors: Jiao Yun , Zhang Jianhong , Pan Cunde 
Published: February 2022

AbstractThe pecan is a salt-alkali-tolerant plant, and its fruit and wood have high economic value. This study aimed to explore the molecular mechanisms responsible for salt stress tolerance in the pecan grown under hydroponic conditions to simulate salt stress. The results showed that the photosynthetic rate (Pn) was reduced in response to salt stress, while the intercellular carbon dioxide concentrations (Ci) increased. The response of the pecan to salt stress was measured using iTRAQ (isobaric tags for relative or absolute quantitation) and LC/MS (liquid chromatography and mass spectrometry) non-targeted metabolomics technology. A total of 198 differentially expressed proteins (65 down-regulated and 133 up-regulated) and 538 differentially expressed metabolites (283 down-regulated and 255 up-regulated) were identified after exposure to salt stress for 48 h. These genes were associated with 21 core pathways, shown by Kyoto Encyclopedia of Genes and Genomes annotation and enrichment, including the metabolic pathways involved in nucleotide sugar and amino sugar metabolism, amino acid biosynthesis, starch and sucrose metabolism, and phenylpropane biosynthesis. In addition, analysis of interactions between the differentially expressed proteins and metabolites showed that two key nodes of the salt stress regulatory network, L-fucose and succinate, were up-regulated and down-regulated, respectively, suggesting that these metabolites may be significant for adaptations to salt stress. Finally, several key proteins were further verified by parallel reaction monitoring. In conclusion, this study used physiological, proteomic, and metabolomic methods to provide an important preliminary foundation for improving the salt tolerance of pecans.
Insights and genetic features of extended-spectrum beta-lactamase producing Escherichia coli isolates from two hospitals in Ghana
Authors: Mahazu Samiratu , Sato Wakana , Ayibieke Alafate , Prah Isaac , Hayashi Takaya , Suzuki Toshihiko , Iwanaga Shiroh , Ablordey Anthony , Saito Ryoichi 
Published: February 2022

AbstractRecently, the emergence and rapid dissemination of extended-spectrum beta-lactamase (ESBL)-producing bacteria, particularly of the family Enterobacteriaceae, has posed serious healthcare challenges. Here, we determined the antimicrobial susceptibility and genetic characteristics of 164 Escherichia coli strains isolated from infected patients in two hospitals in Ghana. In total, 102 cefotaxime-resistant isolates (62.2%) were identified as ESBL-producers. Multilocus sequence typing of the ESBL-producers identified 20 different sequence types (STs) with ST131 (n = 25, 24.5%) as the dominant group. Other detected STs included ST410 (n = 21, 20.6%) and ST617 (n = 19, 18.6%). All identified ESBL-producers harbored blaCTX-M-14, blaCTX-M-15, or blaCTX-M-27, with blaCTX-M-15 (n = 96, 94.1%) being the most predominant ESBL allele. Further analysis showed that the immediate genetic environment around blaCTX-M-15 is conserved within blaCTX-M-15 containing strains. Five of the 25 ST131 isolates were clustered with clade A, one with sub-clade C1, and 19 with the dominant sub-clade C2. The results show that fluoroquinolone-resistant, blaCTX-M-14- and blaCTX- M-15-producing ESBL E. coli ST131 strains belonging to clade A and sub-clades C1 and C2 are disseminating in Ghanaian hospitals. To the best of our knowledge, this is the first report of the ST131 phylogeny in Ghana.
Deep learning based diagnosis for cysts and tumors of jaw with massive healthy samples
Authors: Yu Dan , Hu Jiacong , Feng Zunlei , Song Mingli , Zhu Huiyong 
Published: February 2022

AbstractWe aimed to develop an explainable and reliable method to diagnose cysts and tumors of the jaw with massive panoramic radiographs of healthy peoples based on deep learning, since collecting and labeling massive lesion samples are time-consuming, and existing deep learning-based methods lack explainability. Based on the collected 872 lesion samples and 10,000 healthy samples, a two-branch network was proposed for classifying the cysts and tumors of the jaw. The two-branch network is firstly pretrained on massive panoramic radiographs of healthy peoples, then is trained for classifying the sample categories and segmenting the lesion area. Totally, 200 healthy samples and 87 lesion samples were included in the testing stage. The average accuracy, precision, sensitivity, specificity, and F1 score of classification are 88.72%, 65.81%, 66.56%, 92.66%, and 66.14%, respectively. The average accuracy, precision, sensitivity, specificity, and F1 score of classification will reach 90.66%, 85.23%, 84.27%, 93.50%, and 84.74%, if only classifying the lesion samples and healthy samples. The proposed method showed encouraging performance in the diagnosis of cysts and tumors of the jaw. The classified categories and segmented lesion areas serve as the diagnostic basis for further diagnosis, which provides a reliable tool for diagnosing jaw tumors and cysts.
Identification and selection of healthy spermatozoa in heterozygous carriers of the Phe508del-variant of the CFTR-gene in assisted reproduction
Authors: De Geyter Julie , Gallati-Kraemer Sabina , Zhang Hong , De Geyter Christian 
Published: February 2022

AbstractThe pathogenic variant Phe508del of the CFTR-gene is the most frequent cause of cystic fibrosis (CF). Whereas male CF-patients are infertile due to bilateral agenesis of the efferent ducts, the fertility status of male heterozygous carriers is uncertain. We aimed at demonstrating the involvement of the CFTR-ion channel during sperm capacitation and to potentially select variant-free spermatozoa in heterozygous carriers of the CFTR-variant using flow cytometry (FC). Using FC and sorting, single cell polymerase chain reaction, immuno-fluorescent staining an experimental study was performed on nine fertile semen donors and three heterozygous infertile men carrying the Phe508del gene variant. Chemical inhibition of CFTR interfered with sperm capacitation. Most viable spermatozoa of heterozygous carriers of the Phe508del variant of the CFTR-gene show immune-fluorescent CFTR. Sperm capacitation in Phe508del carriers was similar to that in healthy semen donors. Distribution of the Phe508del allele in trio data of CF-affected families corresponded to the expected recessive inheritance pattern. Infertility in Phe508del heterozygous men is unlikely to be caused by the pathogenic variant although some contribution cannot be excluded. Normal sperm capacitation in carriers of pathogenic variants of the Phe508del-gene may in part explain the high prevalence of a potentially lethal recessive disorder.
Climate drives long-term change in Antarctic Silverfish along the western Antarctic Peninsula
Authors: Corso Andrew D. , Steinberg Deborah K. , Stammerjohn Sharon E. , Hilton Eric J. 
Published: February 2022

AbstractOver the last half of the 20th century, the western Antarctic Peninsula has been one of the most rapidly warming regions on Earth, leading to substantial reductions in regional sea ice coverage. These changes are modulated by atmospheric forcing, including the Amundsen Sea Low (ASL) pressure system. We utilized a novel 25-year (1993–2017) time series to model the effects of environmental variability on larvae of a keystone species, the Antarctic Silverfish (Pleuragramma antarctica). Antarctic Silverfish use sea ice as spawning habitat and are important prey for penguins and other predators. We show that warmer sea surface temperature and decreased sea ice are associated with reduced larval abundance. Variability in the ASL modulates both sea surface temperature and sea ice; a strong ASL is associated with reduced larvae. These findings support a narrow sea ice and temperature tolerance for adult and larval fish. Further regional warming predicted to occur during the 21st century could displace populations of Antarctic Silverfish, altering this pelagic ecosystem.
Cortical neural dynamics unveil the rhythm of natural visual behavior in marmosets
Authors: Kaneko Takaaki , Komatsu Misako , Yamamori Tetsuo , Ichinohe Noritaka , Okano Hideyuki 
Published: February 2022

AbstractNumerous studies have shown that the visual system consists of functionally distinct ventral and dorsal streams; however, its exact spatial-temporal dynamics during natural visual behavior remain to be investigated. Here, we report cerebral neural dynamics during active visual exploration recorded by an electrocorticographic array covering the entire lateral surface of the marmoset cortex. We found that the dorsal stream was activated before the primary visual cortex with saccades and followed by the alteration of suppression and activation signals along the ventral stream. Similarly, the signal that propagated from the dorsal to ventral visual areas was accompanied by a travelling wave of low frequency oscillations. Such signal dynamics occurred at an average of 220 ms after saccades, which corresponded to the timing when whole-brain activation returned to background levels. We also demonstrated that saccades could occur at any point of signal flow, indicating the parallel computation of motor commands. Overall, this study reveals the neural dynamics of active vision, which are efficiently linked to the natural rhythms of visual exploration.
Physiology can predict animal activity, exploration, and dispersal
Authors: Wu Nicholas C. , Seebacher Frank 
Published: February 2022

AbstractPhysiology can underlie movement, including short-term activity, exploration of unfamiliar environments, and larger scale dispersal, and thereby influence species distributions in an environmentally sensitive manner. We conducted meta-analyses of the literature to establish, firstly, whether physiological traits underlie activity, exploration, and dispersal by individuals (88 studies), and secondly whether physiological characteristics differed between range core and edges of distributions (43 studies). We show that locomotor performance and metabolism influenced individual movement with varying levels of confidence. Range edges differed from cores in traits that may be associated with dispersal success, including metabolism, locomotor performance, corticosterone levels, and immunity, and differences increased with increasing time since separation. Physiological effects were particularly pronounced in birds and amphibians, but taxon-specific differences may reflect biased sampling in the literature, which also focussed primarily on North America, Europe, and Australia. Hence, physiology can influence movement, but undersampling and bias currently limits general conclusions.
Macrophage migration inhibitory factor is overproduced through EGR1 in TET2low resting monocytes
Authors: Pronier Elodie , Imanci Aygun , Selimoglu-Buet Dorothée , Badaoui Bouchra , Itzykson Raphael , Roger Thierry , Jego Chloé , Naimo Audrey , Francillette Maëla , Breckler Marie , Wagner-Ballon Orianne , Figueroa Maria E. , Aglave Marine , Gautheret Daniel , Porteu Françoise , Bernard Olivier A. , Vainchenker William , Delhommeau François , Solary Eric , Droin Nathalie M. 
Published: February 2022

AbstractSomatic mutation in TET2 gene is one of the most common clonal genetic events detected in age-related clonal hematopoiesis as well as in chronic myelomonocytic leukemia (CMML). In addition to being a pre-malignant state, TET2 mutated clones are associated with an increased risk of death from cardiovascular disease, which could involve cytokine/chemokine overproduction by monocytic cells. Here, we show in mice and in human cells that, in the absence of any inflammatory challenge, TET2 downregulation promotes the production of MIF (macrophage migration inhibitory factor), a pivotal mediator of atherosclerotic lesion formation. In healthy monocytes, TET2 is recruited to MIF promoter and interacts with the transcription factor EGR1 and histone deacetylases. Disruption of these interactions as a consequence of TET2-decreased expression favors EGR1-driven transcription of MIF gene and its secretion. MIF favors monocytic differentiation of myeloid progenitors. These results designate MIF as a chronically overproduced chemokine and a potential therapeutic target in patients with clonal TET2 downregulation in myeloid cells.
Synthesis of α,β-unsaturated ketones through nickel-catalysed aldehyde-free hydroacylation of alkynes
Authors: Rhlee Joon Ho , Maiti Saikat , Lee Jeong Woo , Lee Ho Seung , Bakhtiyorzoda Ismoili Ahror , Lee Soochan , Park Jaehyun , Kang Seok Ju , Kim Yung Sam , Seo Jeong Kon , Myung Kyungjae , Choe Wonyoung , Hong Sung You 
Published: February 2022

Abstractα,β-Unsaturated ketones are common feedstocks for the synthesis of fine chemicals, pharmaceuticals, and natural products. Transition metal-catalysed hydroacylation reactions of alkynes using aldehydes have been recognised as an atom-economical route to access α,β-unsaturated ketones through chemoselective aldehydic C–H activation. However, the previously reported hydroacylation reactions using rhodium, cobalt, or ruthenium catalysts require chelating moiety-bearing aldehydes to prevent decarbonylation of acyl-metal-hydride complexes. Herein, we report a nickel-catalysed anti-Markovnikov selective coupling process to afford non-tethered E-enones from terminal alkynes and S-2-pyridyl thioesters in the presence of zinc metal as a reducing agent. Utilization of a readily available thioester as an acylating agent and water as a proton donor enables the mechanistically distinctive and aldehyde-free hydroacylation of terminal alkynes. This non-chelation-controlled approach features mild reaction conditions, high step economy, and excellent regio- and stereoselectivity.
Integrated quantum polariton interferometry
Authors: Nigro Davide , D’Ambrosio Vincenzo , Sanvitto Daniele , Gerace Dario 
Published: February 2022

AbstractExciton-polaritons are hybrid radiation-matter elementary excitations that, thanks to their strong nonlinearities, enable a plethora of physical phenomena ranging from room temperature condensation to superfluidity. While polaritons are usually exploited in a high-density regime, evidence for quantum correlations at the level of few excitations has been recently reported, thus suggesting the possibility of using these systems for quantum information purposes. Here we show that integrated circuits of propagating single polaritons can be arranged to build deterministic quantum logic gates in which the two-particle interaction energy plays a crucial role. Besides showing their prospective potential for photonic quantum computation, we also show that these systems can be exploited for metrology purposes, as for instance to precisely measure the magnitude of the polariton-polariton interaction at the two-body level. Our results will motivate the development of practical quantum polaritonic devices in prospective quantum technologies.
Environmental structure impacts microbial composition and secondary metabolism
Authors: Junkins Emily N , McWhirter Joseph B , McCall Laura-Isobel , Stevenson Bradley S 
Published: February 2022

Abstract
Determining the drivers of microbial community assembly is a central theme of microbial ecology, and chemical ecologists seek to characterize how secondary metabolites mediate these assembly patterns. Environmental structure affects how communities assemble and what metabolic pathways aid in that assembly. Here, we bridged these two perspectives by addressing the chemical drivers of community assembly within a spatially structured landscape with varying oxygen availability. We hypothesized that structured environments would favor higher microbial diversity and metabolite diversity. We anticipated that the production of a compound would be more advantageous in a structured environment (less mixing) compared to an unstructured environment (more mixing), where the molecule would have a diminished local effect. We observed this to be partially true in our experiments: structured environments had similar microbial diversity compared to unstructured environments but differed significantly in the metabolites produced. We also found that structured environments selected for communities with higher evenness, rather than communities with higher richness. This supports the idea that when characterizing the drivers of community assembly, it matters less about who is there and more about what they are doing. Overall, these data contribute to a growing effort to approach microbial community assembly with interdisciplinary tools and perspectives.
Genomic analysis of focal nodular hyperplasia with associated hepatocellular carcinoma unveils its malignant potential: a case report
Authors: Ercan Caner , Coto-Llerena Mairene , Gallon John , Fourie Lana , Marinucci Mattia , Hess Gabriel F. , Vosbeck Jürg , Taha-Mehlitz Stephanie , Boldanova Tuyana , Meier Marie-Anne , Tzankov Alexandar , Matter Matthias S. , Hoffmann Martin H. K. , Di Tommaso Luca , von Flüe Markus , Ng Charlotte K. Y. , Heim Markus H. , Soysal Savas D. , Terracciano Luigi M. , Kollmar Otto , Piscuoglio Salvatore 
Published: February 2022

Abstract
Background
Focal nodular hyperplasia (FNH) is typically considered a benign tumor of the liver without malignant potential. The co-occurrence of FNH and hepatocellular carcinoma (HCC) has been reported in rare cases. In this study we sought to investigate the clonal relationship between these lesions in a patient with FNH-HCC co-occurrence.

Methods
A 74-year-old female patient underwent liver tumor resection. The resected nodule was subjected to histologic analyses using hematoxylin and eosin stain and immunohistochemistry. DNA extracted from microdissected FNH and HCC regions was subjected to whole exome sequencing. Clonality analysis were performed using PyClone.

Results
Histologic analysis reveals that the nodule consists of an FNH and two adjoining HCC components with distinct histopathological features. Immunophenotypic characterization and genomic analyses suggest that the FNH is clonally related to the HCC components, and is composed of multiple clones at diagnosis, that are likely to have progressed to HCC through clonal selection and/or the acquisition of additional genetic events.

Conclusion
To the best of our knowledge, our work is the first study showing a clonal relationship between FNH and HCC. We show that FNH may possess the capability to undergo malignant transformation and to progress to HCC in very rare cases.