bluuebunny/crossref_metadata_2025_split huggingface dataset:
A non-reflecting wave equation through directional wave-field suppression and its finite difference implementation
Authors: Schaeken Teun , Hoogerbrugge Leo , Verschuur Eric 
Published: January 2022

AbstractThe acoustic wave equation describes wave propagation directly from basic physical laws, even in heterogeneous acoustic media. When numerically simulating waves with the wave equation, contrasts in the medium parameters automatically generate all scattering effects. For some applications - such as propagation analysis or certain wave-equation based imaging techniques - it is desirable to suppress these reflections, as we are only interested in the transmitted wave-field. To achieve this, a modification to the constitutive relations is proposed, yielding an extra term that suppresses waves with reference to a preferred direction. The scale-factor $$\alpha$$
α
of this extra term can either be interpreted as a penetration depth or as a typical decay time. This modified theory is implemented using a staggered-grid, time-domain finite difference scheme, where the acoustic Poynting-vector is used to estimate the local propagation direction of the wave-field. The method was successfully used to suppress reflections in media with bone tissue (medical ultrasound) and geophysical subsurface structures, while introducing only minor perturbations to the transmitted wave-field and a small increase in computation time.
Developing a prediction model to estimate the true burden of respiratory syncytial virus (RSV) in hospitalised children in Western Australia
Authors: Gebremedhin Amanuel Tesfay , Hogan Alexandra B. , Blyth Christopher C. , Glass Kathryn , Moore Hannah C. 
Published: January 2022

AbstractRespiratory syncytial virus (RSV) is a leading cause of childhood morbidity, however there is no systematic testing in children hospitalised with respiratory symptoms. Therefore, current RSV incidence likely underestimates the true burden. We used probabilistically linked perinatal, hospital, and laboratory records of 321,825 children born in Western Australia (WA), 2000–2012. We generated a predictive model for RSV positivity in hospitalised children aged < 5 years. We applied the model to all hospitalisations in our population-based cohort to determine the true RSV incidence, and under-ascertainment fraction. The model’s predictive performance was determined using cross-validated area under the receiver operating characteristic (AUROC) curve. From 321,825 hospitalisations, 37,784 were tested for RSV (22.8% positive). Predictors of RSV positivity included younger admission age, male sex, non-Aboriginal ethnicity, a diagnosis of bronchiolitis and longer hospital stay. Our model showed good predictive accuracy (AUROC: 0.87). The respective sensitivity, specificity, positive predictive value and negative predictive values were 58.4%, 92.2%, 68.6% and 88.3%. The predicted incidence rates of hospitalised RSV for children aged < 3 months was 43.7/1000 child-years (95% CI 42.1–45.4) compared with 31.7/1000 child-years (95% CI 30.3–33.1) from laboratory-confirmed RSV admissions. Findings from our study suggest that the true burden of RSV may be 30–57% higher than current estimates.
Fractional model of MHD blood flow in a cylindrical tube containing magnetic particles
Authors: Majeed Samina , Ali Farhad , Imtiaz Anees , Khan Ilyas , Andualem Mulugeta 
Published: January 2022

AbstractIn recent years, the use of magnetic particles for biomedicine and clinical therapies has gained considerable attention. Unique features of magnetic particles have made it possible to apply them in medical techniques. These techniques not only provide minimal invasive diagnostic tools but also transport medicine within the cell. In recent years, MRI, drug supply to infected tissue, Hyperthermia are more enhanced by the use of magnetic particles. The present study aims to observe heat and mass transport through blood flow containing magnetic particles in a cylindrical tube. Furthermore, the magnetic field is applied vertically to blood flow direction. The Caputo time fractional derivative is used to model the problem. The obtained partial fractional derivatives are solved using Laplace transform and finite Hankel transform. Furthermore, the effect of various physical parameters of our interest has also been observed through various graphs. It has been noticed that the motion of blood and magnetic particles is decelerated when the particle mass parameter and the magnetic parameter are increased. These findings are important for medicine delivery and blood pressure regulation.
Analysis of the cells isolated from epithelial cell rests of Malassez through single-cell limiting dilution
Authors: Islam Syed Taufiqul , Kurashige Yoshihito , Minowa Erika , Yoshida Koki , Paudel Durga , Uehara Osamu , Okada Yunosuke , Bolortsetseg Dembereldorj , Sakakibara Sayaka , Abiko Yoshihiro , Saitoh Masato 
Published: January 2022

AbstractThe epithelial cell rests of Malassez (ERM) are essential in preventing ankylosis between the alveolar bone and the tooth (dentoalveolar ankylosis). Despite extensive research, the mechanism by which ERM cells suppress ankylosis remains uncertain; perhaps its varied population is to reason. Therefore, in this study, eighteen unique clones of ERM (CRUDE) were isolated using the single-cell limiting dilution and designated as ERM 1–18. qRT-PCR, ELISA, and western blot analyses revealed that ERM-2 and -3 had the highest and lowest amelogenin expression, respectively. Mineralization of human periodontal ligament fibroblasts (HPDLF) was reduced in vitro co-culture with CRUDE ERM, ERM-2, and -3 cells, but recovered when an anti-amelogenin antibody was introduced. Transplanted rat molars grown in ERM-2 cell supernatants produced substantially less bone than those cultured in other cell supernatants; inhibition was rescued when an anti-amelogenin antibody was added to the supernatants. Anti-Osterix antibody staining was used to confirm the development of new bones. In addition, next-generation sequencing (NGS) data were analysed to discover genes related to the distinct roles of CRUDE ERM, ERM-2, and ERM-3. According to this study, amelogenin produced by ERM cells helps to prevent dentoalveolar ankylosis and maintain periodontal ligament (PDL) space, depending on their clonal diversity.
Effects of isometric leg training on ambulatory blood pressure and morning blood pressure surge in young normotensive men and women
Authors: Baross Anthony W. , Brook Robert D. , Kay Anthony D. , Howden Reuben , Gaillard Ebony C. , Gordon Ben D. H. , Milne Kevin J. , McGowan Cheri L. M. , Swaine Ian L. 
Published: January 2022

AbstractDespite the reported association between diurnal variations in ambulatory blood pressure (BP) and elevated cardiovascular disease risk, little is known regarding the effects of isometric resistance training (IRT), a practical BP-lowering intervention, on ambulatory BP and morning BP surge (MBPS). Thus, we investigated whether (i) IRT causes reductions in ambulatory BP and MBPS, in young normotensives, and (ii) if there are any sex differences in these changes. Twenty normotensive individuals (mean 24-h SBP = 121 ± 7, DBP = 67 ± 6 mmHg) undertook 10-weeks of bilateral-leg IRT (4 × 2-min/2-min rest, at 20% maximum voluntary contraction (MVC) 3 days/week). Ambulatory BP and MBPS (mean systolic BP (SBP) 2 h after waking minus the lowest sleeping 1 h mean SBP) was measures pre- and post-training. There were significant reductions in 24-h ambulatory SBP in men (− 4 ± 2 mmHg,P = 0.0001) and women (− 4 ± 2 mmHg,P = 0.0001) following IRT. Significant reductions were also observed in MBPS (− 6 ± 8 mmHg,p = 0.044; − 6 ± 7 mmHg,P = 0.019), yet there were no significant differences between men and women in these changes, and 24-h ambulatory diastolic BP remained unchanged. Furthermore, a significant correlation was identified between the magnitude of the change in MBPS and the magnitude of changes in the mean 2-h SBP after waking for both men and women (men, r = 0.89,P = 0.001; women, r = 0.74,P = 0.014). These findings add further support to the idea that IRT, as practical lifestyle intervention, is effective in significantly lowering ambulatory SBP and MBPS and might reduce the incidence of adverse cardiovascular events that often occur in the morning.
GFAP splice variants fine-tune glioma cell invasion and tumour dynamics by modulating migration persistence
Authors: Uceda-Castro Rebeca , van Asperen Jessy V. , Vennin Claire , Sluijs Jacqueline A. , van Bodegraven Emma J. , Margarido Andreia S. , Robe Pierre A. J. , van Rheenen Jacco , Hol Elly M. 
Published: January 2022

AbstractGlioma is the most common form of malignant primary brain tumours in adults. Their highly invasive nature makes the disease incurable to date, emphasizing the importance of better understanding the mechanisms driving glioma invasion. Glial fibrillary acidic protein (GFAP) is an intermediate filament protein that is characteristic for astrocyte- and neural stem cell-derived gliomas. Glioma malignancy is associated with changes in GFAP alternative splicing, as the canonical isoform GFAPα is downregulated in higher-grade tumours, leading to increased dominance of the GFAPδ isoform in the network. In this study, we used intravital imaging and an ex vivo brain slice invasion model. We show that the GFAPδ and GFAPα isoforms differentially regulate the tumour dynamics of glioma cells. Depletion of either isoform increases the migratory capacity of glioma cells. Remarkably, GFAPδ-depleted cells migrate randomly through the brain tissue, whereas GFAPα-depleted cells show a directionally persistent invasion into the brain parenchyma. This study shows that distinct compositions of the GFAPnetwork lead to specific migratory dynamics and behaviours of gliomas.
Training associated alterations in equine respiratory immunity using a multiomics comparative approach
Authors: Karagianni Anna E. , Kurian Dominic , Cillán-Garcia Eugenio , Eaton Samantha L. , Wishart Thomas M. , Pirie R. Scott 
Published: January 2022

AbstractNeutrophilic airway inflammation is highly prevalent in racehorses in training, with the term mild to moderate equine asthma (MMEA) being applied to the majority of such cases. Our proposed study is largely derived from the strong association between MMEA in racehorses and their entry into a race training program. The objectives of this study are to characterise the effect of training on the local pulmonary immune system by defining the gene and protein expression of tracheal wash (TW) derived samples from Thoroughbred racehorses prior to and following commencement of race training. Multiomics analysis detected 2138 differentially expressed genes and 260 proteins during the training period. Gene and protein sets were enriched for biological processes related to acute phase response, oxidative stress, haemopoietic processes, as well as to immune response and inflammation. This study demonstrated TW samples to represent a rich source of airway cells, protein and RNA to study airway immunity in the horse and highlighted the benefits of a multiomics methodological approach to studying the dynamics of equine airway immunity. Findings likely reflect the known associations between race-training and both airway inflammation and bleeding, offering further insight into the potential mechanisms which underpin training associated airway inflammation.
A new method for birch tar making with materials available in the Stone Age
Authors: Koch Tabea J. , Schmidt Patrick 
Published: January 2022

AbstractThe use of birch tar can be traced back to the European Middle Palaeolithic and is relevant for our understanding of the technical skills and cognitive abilities of Neanderthals. Due to the lack of archaeological evidence, it remains unknown what techniques were used for birch tar making. Efficiency was recently used as a proxy to determine the method most likely used in the Middle Palaeolithic. Todtenhaupt et al. have proposed a technique employing a groove-like structure that is comparable with the recently presented condensation method. The groove method resulted in higher tar yields compared to other experimental aceramic production processes. However, the implications for Palaeolithic tar making remain unclear because some of the materials used in the experiment were not available then (polished granite slabs). To approach this problem, we replicated the groove with river cobbles and, in a second experiment with flint fragments, to evaluate whether similar results can be obtained. We were successful in producing birch tar in multiple runs with the cobble- and flint-grooves, which, in addition, proved to be more efficient than the condensation method in terms of tar yield per bark input. Our experimental study provides an additional possibility to make prehistoric birch tar.
Accuracy of mutational signature software on correlated signatures
Authors: Wu Yang , Chua Ellora Hui Zhen , Ng Alvin Wei Tian , Boot Arnoud , Rozen Steven G. 
Published: January 2022

AbstractMutational signatures are characteristic patterns of mutations generated by exogenous mutagens or by endogenous mutational processes. Mutational signatures are important for research into DNA damage and repair, aging, cancer biology, genetic toxicology, and epidemiology. Unsupervised learning can infer mutational signatures from the somatic mutations in large numbers of tumors, and separating correlated signatures is a notable challenge for this task. To investigate which methods can best meet this challenge, we assessed 18 computational methods for inferring mutational signatures on 20 synthetic data sets that incorporated varying degrees of correlated activity of two common mutational signatures. Performance varied widely, and four methods noticeably outperformed the others: hdp (based on hierarchical Dirichlet processes), SigProExtractor (based on multiple non-negative matrix factorizations over resampled data), TCSM (based on an approach used in document topic analysis), and mutSpec.NMF (also based on non-negative matrix factorization). The results underscored the complexities of mutational signature extraction, including the importance and difficulty of determining the correct number of signatures and the importance of hyperparameters. Our findings indicate directions for improvement of the software and show a need for care when interpreting results from any of these methods, including the need for assessing sensitivity of the results to input parameters.
Region-specific complexity of the intracranial EEG in the sleeping human brain
Authors: Olejarczyk Elzbieta , Gotman Jean , Frauscher Birgit 
Published: January 2022

AbstractAs the brain is a complex system with occurrence of self-similarity at different levels, a dedicated analysis of the complexity of brain signals is of interest to elucidate the functional role of various brain regions across the various stages of vigilance. We exploited intracranial electroencephalogram data from 38 cortical regions using the Higuchi fractal dimension (HFD) as measure to assess brain complexity, on a dataset of 1772 electrode locations. HFD values depended on sleep stage and topography. HFD increased with higher levels of vigilance, being highest during wakefulness in the frontal lobe. HFD did not change from wake to stage N2 in temporo-occipital regions. The transverse temporal gyrus was the only area in which the HFD did not differ between any two vigilance stages. Interestingly, HFD of wakefulness and stage R were different mainly in the precentral gyrus, possibly reflecting motor inhibition in stage R. The fusiform and parahippocampal gyri were the only areas showing no difference between wakefulness and N2. Stages R and N2 were similar only for the postcentral gyrus. Topographical analysis of brain complexity revealed that sleep stages are clearly differentiated in fronto-central brain regions, but that temporo-occipital regions sleep differently.
Dryland irrigation increases accumulation rates of pedogenic carbonate and releases soil abiotic CO2
Authors: Ortiz Anna C. , Jin Lixin , Ogrinc Nives , Kaye Jason , Krajnc Bor , Ma Lin 
Published: January 2022

AbstractAgricultural fields in drylands are challenged globally by limited freshwater resources for irrigation and also by elevated soil salinity and sodicity. It is well known that pedogenic carbonate is less soluble than evaporate salts and commonly forms in natural drylands. However, few studies have evaluated how irrigation loads dissolved calcium and bicarbonate to agricultural fields, accelerating formation rates of secondary calcite and simultaneously releasing abiotic CO2 to the atmosphere. This study reports one of the first geochemical and isotopic studies of such “anthropogenic” pedogenic carbonates and CO2 from irrigated drylands of southwestern United States. A pecan orchard and an alfalfa field, where flood-irrigation using the Rio Grande river is a common practice, were compared to a nearby natural dryland site. Strontium and carbon isotope ratios show that bulk pedogenic carbonates in irrigated soils at the pecan orchard primarily formed due to flood-irrigation, and that approximately 20–50% of soil CO2 in these irrigated soils is calcite-derived abiotic CO2 instead of soil-respired or atmospheric origins. Multiple variables that control the salt buildup in this region are identified and impact the crop production and soil sustainability regionally and globally. Irrigation intensity and water chemistry (irrigation water quantity and quality) dictate salt loading, and soil texture governs water infiltration and salt leaching. In the study area, agricultural soils have accumulated up to 10 wt% of calcite after just about 100 years of cultivation. These rates will likely increase in the future due to the combined effects of climate variability (reduced rainfall and more intense evaporation), use of more brackish groundwater for irrigation, and reduced porosity in soils. The enhanced accumulation rates of pedogenic carbonate are accompanied by release of large amounts of abiotic CO2 from irrigated drylands to atmosphere. Extensive field studies and modelling approaches are needed to further quantify these effluxes at local, regional and global scales.
Intense ocean freshening from melting glacier around the Antarctica during early twenty-first century
Authors: Pan Xianliang L. , Li Bofeng F. , Watanabe Yutaka W. 
Published: January 2022

AbstractWith the accelerating mass loss of Antarctic ice sheets, the freshening of the Southern Ocean coastal oceans (SOc, seas around Antarctica) is gradually intensifying, which will reduce the formation of bottom water and weaken the meridional overturning circulation, thus having a significant negative impact on the ocean’s role in regulating global climate. Due to the extreme environment of the Southern Ocean and the limitations of observational techniques, our understanding of the glacier-derived freshening of SOc is still vague. We developed a method that first provided us with an expansive understanding of glacier-derived freshening progress over the SOc. Applying this method to the observational data in the SOc from 1926 to 2016, revealed that the rate of glacier-derived freshwater input reached a maximum of 268 ± 134 Gt year−1 during the early twenty-first century. Our results indicate that during the same period, glacier melting accounted for 63%, 28%, and 92% of the total freshening occurred in the Atlantic, Indian, and Pacific sectors of the SOc, respectively. This suggests that the ice shelf basal melt in West Antarctica and the Antarctic Peninsula plays a dominant role in the freshening of the surrounding seas.
Polarization insensitive symmetrical structured double negative (DNG) metamaterial absorber for Ku-band sensing applications
Authors: Hakim Mohammad Lutful , Alam Touhidul , Soliman Mohamed S. , Sahar Norsuzlin Mohd , Baharuddin Mohd Hafiz , Almalki Sami H. A. , Islam Mohammad Tariqul 
Published: January 2022

AbstractMetamaterial absorber (MMA) is now attracting significant interest due to its attractive applications, such as thermal detection, sound absorption, detection for explosive, military radar, wavelength detector, underwater sound absorption, and various sensor applications that are the vital part of the internet of things. This article proposes a modified square split ring resonator MMA for Ku-band sensing application, where the metamaterial structure is designed on FR-4 substrate material with a dielectric constant of 4.3 and loss tangent of 0.025. Perfect absorption is realized at 14.62 GHz and 16.30 GHz frequency bands, where peak absorption is about 99.99% for both frequency bands. The proposed structure shows 70% of the average absorption bandwidth of 420 MHz (14.42–14.84 GHz) and 480 MHz (16.06–16.54 GHz). The metamaterial property of the proposed structure is investigated for transverse electromagnetic mode (TEM) and achieved negative permittivity, permeability, and refractive index property for each absorption frequency band at 0°, 45°, and 90° polarization angles. Interference theory is also investigated to verify the absorption properties. Moreover, the permittivity sensor application is investigated to verify the sensor performance of the proposed structure. Finally, a comparison with recent works is performed, which shows that the proposed MMA can be a good candidate for Ku-band perfect absorber and sensing applications.
Therapeutic outcome of active management in male patients with detrusor underactivity based on clinical diagnosis and videourodynamic classification
Authors: Lee Cheng-Ling , Jhang Jia-Fong , Ho Han-Chen , Jiang Yuan-Hong , Hsu Yuan-Hsiang , Kuo Hann-Chorng 
Published: January 2022

AbstractDetrusor underactivity (DU) could be resulted from many different etiologies. Patients with DU might have reduced bladder sensation, low detrusor contractility, and large post-void residual volume. This study analyzed therapeutic outcome of active management for male DU patients, based on clinical and urodynamic characteristics. Male DU patients aged > 18 years old were retrospectively reviewed from the videourodynamic study (VUDS) records in recent 10 years. The patients’ demographics, VUDS results, treatment modalities, and treatment outcome were analyzed. The treatment outcomes were compared among patients with different DU subgroups, clinical diagnosis and treatment modalities. Patients with voiding efficiency of > 66.7% were considered having a successful treatment outcome. For comparison, 30 men with normal VUDS finding served as the control arm. Most of the DU patients had reduced bladder sensation. The reduced bladder sensation is closely associated with low detrusor contractility. After active treatment, a successful outcome was achieved in 68.4% of patients after bladder outlet surgery, 59.1% after urethral botulinum toxin A injection, and 57.6% after medical treatment, but only 18.2% after conservative treatment. A successful treatment outcome was achieved in patients with an intact detrusor contractility, either low (69.2%) or normal voiding pressure (81.8%), and in patients with a normal or increased bladder sensation (78.1%). However, patients with detrusor acontractile (41.3%) or absent bladder sensation (17.9%) had less favorable treatment outcome after any kind of urological management. This study revealed that active management can effectively improve voiding efficiency in patients with DU. The normal bladder sensation, presence of adequate detrusor contractility, and bladder outlet narrowing during VUDS provide effective treatment strategy for DU patients. Among all management, BOO surgery provides the best treatment outcome.