bluuebunny/crossref_metadata_2025_split huggingface dataset:
Effectiveness of community based-collaborative on forest management of the forest programme III in Central Sulawesi
Authors: Golar G , Muis H , Herman A , Simorangkir W S 
Published: December 2022

Abstract
Indonesia is moving quickly to ratify the Paris Agreement as stipulated in Constitution Number 16/2016 as a total commitment and contribution to reducing global carbon emissions. For this action, Indonesia received a cooperation grant, one of which was the Forest Programme (FP) III Sulawesi. FP III aims to contribute to implementing forest conservation and rehabilitation strategies, as a form of adaptation and mitigation of climate change, through support for improving the livelihoods of the rural poor. This program was conducted with multi-stakeholder management in the Lore Lindu landscape. This study attempted to examine the effectiveness of the project on collaborative community-based forest management with an explanatory approach. The results showed that interconnectivity between programs in each PIU had not gone optimally. Although the village facilitators have carried out their job, the indicator results have not followed the community’s needs. In addition, the role of FMUs as the holder of the regional authority at the site level has not been directly involved. It has strategic value for the national interest, ensuring that the forest and land rehabilitation program’s implementation will be in the right location on the target because FMUs have detailed data and information at the field level.
Upland rice growth on giving of biochar and organic fertilizer
Authors: Rahayu M , Nurmalasari AI , Aprilya K 
Published: December 2022

Abstract
Upland rice is a food crop commodity that can be cultivated on dry land. Increasing soil fertility on dry land can be through the addition of organic materials in the form of biochar and organic fertilizers. The aim of this research was to examine the growth of upland rice on the application of several types of biochar and organic fertilizers. The research was conducted in Sukosari Jumantono Village, Karanganyar in March-June 2022. The research used completely randomized block design. The first factor was type of biochar (without biochar, coconut shell biochar, rice husk biochar, strobilanthes biochar) and the second factor was type of organic fertilizer (without organic fertilizer, chicken manure, goat manure, cow manure) with three replications. Data analysis using Analysis of Variance and Duncan’s Multiple Range Test. The results showed that the application of biochar and organic fertilizers was not able to increase plant height, fresh weight of biomass, dry weight of biomass and leaf area of upland rice. The application of biochar can increase the leaves number and tiller number of upland rice at 4-6 weeks after planting (WAP). Coconut shell biochar produced the highest leaves number and tillers numbers than rice husk biochar and strobilanthes biochar.
Genetic variability, correlation and path coefficient among agronomic characters of soybeans [Glycine max (L.) Merr.] lines
Authors: Kuswantoro Heru , Santoso Juli , Suryanto Agus 
Published: December 2022

Abstract
Genetic variability and relationship among characters plays important roles in development of plants varieties. The aim of the research was to study genetic variability and relationship among characters. Fifty soybean lines were grown in randomized complete block design with three replicates. The number of branches and seed yield that had broad genetic variability. The maturity, branches, and 100-seed weight had high heritability. Seed weight per plant and seed yield showed significant genotypic correlations. The phenotypic correlation among characters was found between seed yield with number of filled pods, 100 seeds weight and seed weight per plant, branches with productive node and filled pods, and productive nodes with filled pods. Phenotypic path coefficient revealed that flowering, branches, 100-seed weight, and seed weight per plant contributed directly to seed yield per plot. Despite having high heritability and broad genetic variability, branches per plant showed negative indirect effect through number of nodes and seed weight per plant, while seed weight per plant showed positive indirect effect through number of branches per plant. Direct selection should be based on seed yield, while indirect selection should be based on seed weight per plant.
Diversity of agarwood-inducing fungi from Gyrinops versteegii tree
Authors: Roswanjaya Y P , Rosdayanti H , Nawfetrias W 
Published: December 2022

Abstract

Gyrinops versteegii is a tropical tree of the Thymelaeaceae family. Under special conditions, G. versteegii tree can produce agarwood (Gaharu), a high economic commodity in the world yielding aromatic resin. Agarwood can be used for incense, perfume, addition to herbal medicine, food ingredients, and ornamental functions. It also contains phenolic compounds and feruly glycerides, which exhibit anti-cancer activity. It is apparently an induced resinous product due to subsequent infection by facultative fungal pathogens. In this study, we aim to investigate the diversity of agarwood-inducing fungi by isolating fungi from the infected trunk of G. versteegii. The pure fungi isolates were identified microscopically and then reconfirmed by molecular techniques. The identification method included genomic DNA isolation, DNA amplification of Internal Transcribed Spacer (ITS) genes by a specific primer, direct ITS gene sequencing and molecular analysis of fungi species. The investigated fungi that resulted from this research are Fusarium sp. Gv1, Aspergillus sp. Gv2 and Fusarium sp. Gv3. Three different fungi found in the same infection site show that the diversity of agarwood-inducing fungi from the G. versteegii tree is relatively high.
Effect of moringa leaf extract and cow-manure on soya bean growth and yield
Authors: Haryuni H , Atmaja I Y , Supriyadi T , Priyadi S , Rumaningsih M 
Published: December 2022

Abstract

Glycine max. L. Merril. is one of Indonesia’s strategic commodities, whose productivity can be increased by using moringa leaf extract (Simplicia extract) and cow manure. This research aims to determine the effect of the dose of Simplicia extract and cow manure on the growth and yield of soya beans. The research was carried out from October to December 2020. The soil type was regosol in Jagalan Village, Karangnongko District, Klaten Regency, Central Java. The research design used the factorial method with a completely randomized design (CRD) which consisted of 2 factors; the first factor was dose variations of Simplicia extract (M) were 0, 10, 20, 30, 40, and 50 ml./L (M0, M1, M2, M3, M4, and M5), the second factor is cow manure (C) which is 30 and 60 g/polybag (P1 and P2). The results showed that the combination treatment of M5P2 at a dose of 50 ml/L of Simplicia extract and 60g/polybag of cow manure had the highest growth and yield compared to other treatments. This research provides information on appropriate doses of Simplicia extract and cow manure on soya bean yield and growth.
Analysis of bacterial community from the rhizosphere of shallots (Allium ascalonicum L.) in Brebes, Central Java, using Next Generation Sequencing (NGS) approach
Authors: Rosariastuti R , Sutami  , Sumani  , Hartati S 
Published: December 2022

Abstract
Brebes is the largest shallot center in Indonesia. This area contributes 18.5 % of national or 57 % of production in Central Java. Farmers regularly spray about 63-93% of pesticides every 3-7 days in their maintenance. It is necessary to improve technology and the use of bacteria in it. This study aimed to determine the diversity of soil bacteria in two types of land use as initial information to optimize its role in overcoming pesticide pollution and increasing the productivity of shallots in the future. Sampling using the purposive sampling method. The bacteria community in the shallot field (KB2) and secondary forest (KB4) using the Next Generation Sequencing technique. Identification using FLASH (V1.2.7) and QIIME (V1.7.0) analysis. The results showed that the soil bacterial community in KB4 was higher than in KB2. The soil bacterial communities in KB2 were seven phyla, while in KB4 were eight phyla. In order of largest to the smallest relative abundance in KB2, including Proteobacteria (0.970%), Actinobacteria (0.015%), Firmicutes (0.014%), Fusobacteriota (0.001%), Desulfobacterota (0.0003%), Bacteroidota (0.0001%), and others (0.011%). In KB4, there are 8 phyla, namely Elusimicrobiota (6.385%), Cyanobacteria (3.192%), Proteobacteria (0.9861%), Actinobacteria (0.0041%), Firmicutes (0.0089%), Desulfobacterota (0.0001%), Bacteroidota (0.0002%), and others (0.0003%).
The Effect of Empty Fruit Bunch (EFB) Compost and Trichoderma Biofertilizer on Growth and Yield Performance of Chili (Capsicum annuum L. Var. Kulai)
Authors: Tangga C K , Mohidin H , Abdullah S 
Published: December 2022

Abstract
Chili Kulai (Capsicum annuum L) is a typical and popular chili that utilized by Malaysians as a spice in their daily food, emphasize its economic value. The objectives of this study were to evaluate the effect of empty fruit bunch (EFB) compost and Trichoderma biofertilizer on the growth and yield performance of chili production, as well as to determine physicochemical properties of soil and to evaluate N, P, K content of chili plant tissue. The experimental design used was Randomized Completely Block Design (RCBD) with four treatments replicated four (4) times with four plants giving a total of 64 experimental units. The treatments involved were: T1 (Control), T2 (100% EFB compost), T3 (100% Trichoderma biofertilizer) and T4 (50% EFB compost + 50% Trichoderma biofertilizer). The results revealed, there was a significant difference (p<0.05) for growth and yield performance of chili production. As for the nutrient content (%) in both soil and plant, T4 showed the highest NPK content with N (1.98%), P (0.76%) and K (0.69%). In conclusion, this study proved that the use of organic based EFB compost enriched with Trichoderma biofertilizer has increased the yield of chili plant, thus reducing the use of chemical fertilizer.
The Growth Response and Nutritional Status of Eggplant (Solanum melongena L.) Planted in Soil Incorporated with Oyster Mushroom Waste
Authors: Bisop W , Hashim M M , Mohidin H 
Published: December 2022

Abstract
Waste disposal has become primary concern in mushroom industry as it can lead to various environmental issues without proper waste management. Most of the mushroom grower are unaware of the utilization of organic waste as soil amendment which have been proven to improve the soil properties, growth performances and yield of various crops if conducted properly. This study intended to determine the growth response and nutritional status of eggplant by utilizing the oyster mushroom waste (OMW) as part of the growing medium. The experiment design used was Randomized Complete Block Design (RCBD) and the treatments involved were: T1 (100% Topsoil), T2 (90% Topsoil + 10% OMW), T3 (70% Topsoil + 30% OMW) and T4 (50% Topsoil + 50% OMW). The study showed that there was a significant difference on soil properties which is determined by the soil moisture content and soil pH value between treatment where p<0.0.5. The utilization of OMW in treatment showed to had a higher nutrient content (%) in both soil and plant and recorded to had better yield performances in eggplant cultivation, as it increases the eggplant yield by 30%-50%. Thus, mushroom waste can potentially be reutilized to avoid environmental problems while improving the growth and yield of eggplant.
Factors influencing biological asset disclosures in agricultural companies in Indonesia
Authors: Ika S R , Susetyo R , Pribadi A , Dwiwinarno T , Widagdo A K 
Published: December 2022

Abstract
This study examines to what extent biological asset reporting is corresponding to the Indonesian Statement of Financial Accounting Standard 69 (PSAK 69) among Indonesia Stock Exchange-listed agricultural firms. In their annual report, such companies should report how they recognize and measure the fair value of the living plants or animals’ assets. This study also examines factors that might impact the extent of disclosure of biological assets. The examined factors are biological asset intensity, concentrated ownership, audit committee effectiveness, profitability, and size. Biological asset disclosures were measured by a checklist derived from PSAK 69 and International Accounting Standard (IAS) 41 on Agriculture. This study uses 53 firm-year observations of the listed agriculture companies from 2017 to 2020. Multiple regression analysis findings indicate that biological asset intensity and firm size affect favorably the amount of biological asset disclosures. The results indicate that the greater the living plants or animals owned by a company and the larger the firm, the greater the commitment of a company to disclose its biological assets in its annual report. The study sheds light on the capital market authority agency’s current policy to strengthen factors that may impact agricultural companies’ disclosure of their biological assets.
The role of local leader on food security campaign toward sustainable goals of agriculture in Simeulue Island
Authors: Abus A F , Lubis T , Abus A A , Saputra N , Abus N A A 
Published: December 2022

Abstract
This study describes the relationship between food security and the role of the local leader in motivating his community to maintain their typical plants as the sources of their main food. This qualitative study used ethnography to describe humans’ role in making their life and environment harmonious, especially food security. From the recording and the interview result, it is known that the role of the chief as the informal leader has more opportunity and power to listen. It is known that in the past, the role of the local chief succeeded in influencing and convincing his community to consume rice as the main food and affected the community to grow rice even though their environment was not supported enough. The ‘rice standardization’ as a welfare area is not appropriate to be settled in all places in Indonesia. Formerly, Simeuluenese already knew and consumed other main food except for rice, namely sago and taeb, as their main food. However, the policy changed their mind to consuming rice as their main food instead of sago. Consequently, the local chief’s role is essential to campaign again to convince his community of food security toward sustainable goals based on local wisdom.
Organic materials and fish emulsion on shoot multiplication of Cavendish banana (Musa paradisiaca ‘Cavendish’)
Authors: Charantika J W , Samanhudi  , Sakya A T 
Published: December 2022

Abstract
This study aims to investigate the effect of combining organic matter and fish emulsion on the multiplication of Cavendish banana shoots. This study employed one factor of a complete randomized design, with 13 levels of treatment: MS (Murashige and Skoog) + purple sweet potato extract, MS + purple sweet potato extract + fish emulsion 2 ppm, MS + purple sweet potato extract + fish emulsion 4 ppm, MS + purple sweet potato extract + fish emulsion 6 ppm, MS + banana peel extract, MS + banana peel extract + fish emulsion 2 ppm, MS + banana peel extract + fish emulsion 4 ppm, MS + banana peel extract + fish emulsion 6 ppm, MS + bean sprouts extract, MS + Bean sprouts extract + fish emulsion 2 ppm, MS + bean sprouts extract + fish emulsion 4 ppm, MS + bean sprouts extract + fish emulsion 6 ppm, and MS + BAP (benzyl amino purine) as controls. The results show that the combination of synthetic materials (BAP) still has significantly different results compared to organic matter and fish emulsion treatment.
Comparison of out-of-field normal tissue dose estimates for pencil beam scanning proton therapy: MCNP6, PHITS, and TOPAS
Authors: Griffin Keith T , Yeom Yeon Soo , Mille Matthew M , Lee Choonik , Jung Jae Won , Hertel Nolan E , Lee Choonsik 
Published: December 2022

Abstract
Monte Carlo (MC) methods are considered the gold-standard approach to dose estimation for normal tissues outside the treatment field (out-of-field) in proton therapy. However, the physics of secondary particle production from high-energy protons are uncertain, particularly for secondary neutrons, due to challenges in performing accurate measurements. Instead, various physics models have been developed over the years to reenact these high-energy interactions based on theory. It should thus be acknowledged that MC users must currently accept some unknown uncertainties in out-of-field dose estimates. In the present study, we compared three MC codes (MCNP6, PHITS, and TOPAS) and their available physics models to investigate the variation in out-of-field normal tissue dosimetry for pencil beam scanning proton therapy patients. Total yield and double-differential (energy and angle) production of two major secondary particles, neutrons and gammas, were determined through irradiation of a water phantom at six proton energies (80, 90, 100, 110, 150, and 200 MeV). Out-of-field normal tissue doses were estimated for intracranial irradiations of 1-, 5-, and 15-year-old patients using whole-body computational phantoms. Notably, the total dose estimates for each out-of-field organ varied by approximately 25% across the three codes, independent of its distance from the treatment volume. Dose discrepancies amongst the codes were linked to the utilized physics model, which impacts the characteristics of the secondary radiation field. Using developer-recommended physics, TOPAS produced both the highest neutron and gamma doses to all out-of-field organs from all examined conditions; this was linked to its highest yields of secondary particles and second hardest energy spectra. Subsequent results when using other physics models found reduced yields and energies, resulting in lower dose estimates. Neutron dose estimates were the most impacted by physics model choice, and thus the variation in out-of-field dose estimates may be even larger than 25% when considering biological effectiveness.
Review of pMUTs for medical imaging: towards high frequency arrays
Authors: S Atheeth , Krishnan Kajoli , Arora Manish 
Published: December 2022

Abstract
pMUT (piezoelectric Micromachined Ultrasound Transducer) devices are an alternative that can overcome the limitations associated with conventional ultrasound transducers. pMUT’s are reported for many applications such as range-finding, biometrics, and ultrasound imaging. However, pulse-echo measurements from fabricated pMUT devices/arrays are not commonly reported in literature, a reason being lack of desirable performance either in transmit or receive mode of operation. There is also limited information about the design, fabrication and characterization of 2D-pMUT-arrays operating at high frequencies (>15 MHz) in water medium. In this paper we review ‘state-of-the-art’ for pMUT-array based medical ultrasound imaging, with a focus on their pulse-echo imaging capability. Over the next 3–5 years, we expect further improvement in piezoelectric thin film deposition techniques, on-chip integration of pre-amplification circuits and further miniaturization of pMUT devices, thus paving the way for development of pMUT-array based high frequency medical imaging systems.
Codetta: predicting the genetic code from nucleotide sequence
Authors: Shulgina Yekaterina , Eddy Sean R 
Published: December 2022

Abstract

Summary
Codetta is a Python program for predicting the genetic code table of an organism from nucleotide sequences. Codetta can analyze an arbitrary nucleotide sequence and needs no sequence annotation or taxonomic placement. The most likely amino acid decoding for each of the 64 codons is inferred from alignments of profile hidden Markov models of conserved proteins to the input sequence.

Availability and implementation
Codetta 2.0 is implemented as a Python 3 program for MacOS and Linux and is available from http://eddylab.org/software/codetta/codetta2.tar.gz and at http://github.com/kshulgina/codetta.

Supplementary information
Supplementary data are available at Bioinformatics online.
Non-Lactobacillus-Dominant and Polymicrobial Vaginal Microbiomes Are More Common in Younger South African Women and Predictive of Increased Risk of Human Immunodeficiency Virus Acquisition
Authors: Wang Yiran , Noël-Romas Laura , Perner Michelle , Knodel Samantha , Molatlhegi Refilwe , Hoger Sarah , Birse Kenzie , Zuend Christina Farr , McKinnon Lyle R , Burgener Adam D 
Published: December 2022

AbstractBackgroundAdolescent girls and young women aged 15‒24 years in sub-Saharan Africa are at disproportionate risk of human immunodeficiency virus (HIV) infection. Given the known association between vaginal microbial dysbiosis and HIV susceptibility, we performed an age-stratified analysis of the vaginal microbiome in South African women and compared this to their risk of HIV acquisition.MethodsVaginal microbiome data were generated by mass spectrometry–based proteomic analysis of cervicovaginal lavages collected from participants (n = 688) in the Centre for the AIDS Programme of Research in South Africa (CAPRISA) 004 trial. Participants were grouped by age (18–19 years, n = 93; 20–24 years, n = 326; 25–41 years, n = 269).ResultsFour microbiome types were identified based on predominant taxa, including Lactobacillus crispatus (CST-LC, 12.2%), Lactobacillus iners (CST-LI, 43.6%), Gardnerella vaginalis (CST-GV, 26.6%), or polymicrobial (CST-PM, 15.1%). Women aged 18–19 and 20–24 years had increased CST-PM and a non-Lactobacillus-dominant microbiome compared to those 25–41 years (odds ratio [OR], 3.14 [95% confidence interval {CI}, 1.12–7.87], P = .017; OR, 2.81 [95% CI, 1.07–7.09], P = .038, respectively; and OR, 1.65 [95% CI, 1.02–2.65], P = .028; OR, 1.40 [95% CI, 1.01–1.95], P = .030, respectively). The HIV incidence rate of women with CST-PM microbiome was 7.19-fold higher compared to women with CST-LC (hazard ratio [HR], 7.19 [95% CI, 2.11–24.5], P = .00162), which was also consistent in women aged 20–24 years (HR, 4.90 [95% CI, 1.10–21.9], P = .0375).ConclusionsYounger women were more likely to have a higher-risk polymicrobial microbiome suggesting that vaginal microbiota are contributing to increased HIV-1 susceptibility in this group.Clinical Trials RegistrationNCT00441298.