bluuebunny/crossref_metadata_2025_split huggingface dataset:
The Combined Impact of Canopy Stability and Soil NOx Exchange on Ozone Removal in a Temperate Deciduous Forest
Authors: Visser Auke J. , Ganzeveld Laurens N. , Finco Angelo , Krol Maarten C. , Marzuoli Riccardo , Boersma K. Folkert 
Published: September 2022

AbstractDry deposition is an important ozone sink that impacts ecosystem carbon and water cycling. Ozone dry deposition in forests is regulated by vertical transport, stomatal uptake, and non‐stomatal processes including chemical removal. However, accurate descriptions of these processes in deposition parameterizations are hindered by sparse observational constraints on individual sink terms. Here we quantify the contribution of canopy‐atmosphere turbulent exchange and chemical ozone removal by soil‐emitted nitric oxide (NO) to ozone deposition in a North‐Italian broadleaf deciduous forest. We apply a multi‐layer canopy exchange model to interpret campaign observations of nitrogen oxides (NOx = NO + NO2) and ozone exchange above and inside the forest canopy. Two state‐of‐science parameterizations of in‐canopy vertical diffusivity, based on above‐canopy wind speed or stability, do not reproduce the observed exchange suppressed by canopy‐top radiative heating, resulting in overestimated dry deposition velocities of 10%–19% during daytime. Applying observation‐derived vertical diffusivities in our simulations largely resolves this overestimation. Soil emissions are an important NOx source despite the observed high background NOx levels. Soil NOx emissions decrease the gradient between canopy and surface layer NOx mixing ratios, which suppresses simulated NOx deposition by 80% compared to a sensitivity simulation without soil emissions. However, a sensitivity analysis shows that the enhanced chemical ozone sink by reaction with soil‐emitted NO is offset by increased vertical ozone transport from aloft and suppressed dry deposition. Our results highlight the need for targeted observations of non‐stomatal ozone removal and turbulence‐resolving deposition simulations to improve quantification and model representation of forest ozone deposition.
Apportionment of the Pre‐Industrial to Present‐Day Climate Forcing by Methane Using UKESM1: The Role of the Cloud Radiative Effect
Authors: O’Connor Fiona M. , Johnson Ben T. , Jamil Omar , Andrews Timothy , Mulcahy Jane P. , Manners James 
Published: September 2022

AbstractThe Year 1850 to 2014 increase in methane from 808 to 1831 ppb leads to an effective radiative forcing (ERF) of 0.97 ± 0.04 W m−2 in the United Kingdom's Earth System Model, UKESM1. The direct methane contribution is 0.54 ± 0.04 W m−2. It is better represented in UKESM1 than in its predecessor model HadGEM2 due to shortwave and longwave absorption improvements and the absence of an anomalous dust response in the UKESM1 simulations. An indirect ozone ERF of 0.13–0.20 W m−2 is due to the tropospheric ozone increase outweighing that of the stratospheric decrease. The indirect water vapor ERF of 0.02–0.07 W m−2 is consistent with previous estimates. The methane increase also leads to a cloud radiative effect of 0.12 ± 0.02 W m−2 from thermodynamic adjustments and aerosol‐cloud interactions (aci). Shortwave and longwave contributions of 0.23 and −0.35 W m−2 to the cloud forcing arise from radiative heating and stabilization of the upper troposphere, reducing convection and global cloud cover. The aerosol‐mediated contribution (0.28–0.30 W m−2) is due to changes in oxidants reducing new particle formation (−8%), shifting the aerosol size distribution toward fewer but larger particles. Cloud droplet number concentration decreases and cloud droplet effective radius increases. This reduction in the Twomey effect switches the cloud forcing sign (−0.14 to 0.12 W m−2) and is due to chemistry‐aerosol‐cloud coupling in UKESM1. Despite uncertainties in rapid adjustments and process representation in models, these results highlight the potential importance of chemistry‐aerosol‐cloud interactions and dynamical adjustments in climate forcing.
The International Reference Ionosphere Model: A Review and Description of an Ionospheric Benchmark
Authors: Bilitza Dieter , Pezzopane Michael , Truhlik Vladimir , Altadill David , Reinisch Bodo W. , Pignalberi Alessio 
Published: September 2022

AbstractThis paper is a review of the International Reference Ionosphere (IRI) project and model. IRI is recognized as the official standard for the Earth's ionosphere by the International Standardization Organization, the International Union of Radio Science, the Committee on Space Research, and the European Cooperation for Space Standardization. As requested by these organizations, IRI is an empirical (data‐based) model representing the primary ionospheric parameters based on the long data record that exists from ground and space observations of the ionosphere. The core model describes monthly averages of the electron density, electron temperature, ion temperature, and ion composition globally in the altitude range from 60 to 2,000 km. Over time additional parameters were added in response to requests from the user community, this includes the equatorial ion drift, the occurrence probability of spread‐F and of an F1 layer, auroral boundaries and the electron content from the bottom of the ionosphere to user‐specified altitude. IRI has undergone extensive validations and is used for a wide range of applications in science, engineering, and education. This review is the result of many requests we have received for a comprehensive description of the model. It is also meant as a guide for users who are interested in a deeper understanding of the model architecture and its mathematical formalism.
Integrated optical-readout of a high-Q mechanical out-of-plane mode
Authors: Guo Jingkun , Gröblacher Simon 
Published: September 2022

AbstractThe rapid development of high-QM macroscopic mechanical resonators has enabled great advances in optomechanics. Further improvements could allow for quantum-limited or quantum-enhanced applications at ambient temperature. Some of the remaining challenges include the integration of high-QM structures on a chip, while simultaneously achieving large coupling strengths through an optical read-out. Here, we present a versatile fabrication method, which allows us to build fully integrated optomechanical structures. We place a photonic crystal cavity directly above a mechanical resonator with high-QM fundamental out-of-plane mode, separated by a small gap. The highly confined optical field has a large overlap with the mechanical mode, enabling strong optomechanical interaction strengths. Furthermore, we implement a novel photonic crystal design, which allows for a very large cavity photon number, a highly important feature for optomechanical experiments and sensor applications. Our versatile approach is not limited to our particular design but allows for integrating an out-of-plane optical read-out into almost any device layout. Additionally, it can be scaled to large arrays and paves the way to realizing quantum experiments and applications with mechanical resonators based on high-QM out-of-plane modes alike.
A critical evaluation of dynamical systems models of bipolar disorder
Authors: Nunes Abraham , Singh Selena , Allman Jared , Becker Suzanna , Ortiz Abigail , Trappenberg Thomas , Alda Martin 
Published: September 2022

AbstractBipolar disorder (BD) is a mood disorder involving recurring (hypo)manic and depressive episodes. The inherently temporal nature of BD has inspired its conceptualization using dynamical systems theory, which is a mathematical framework for understanding systems that evolve over time. In this paper, we provide a critical review of the dynamical systems models of BD. Owing to the heterogeneity of methodological and experimental designs in computational modeling, we designed a structured approach that parallels the appraisal of animal models by their face, predictive, and construct validity. This tool, the validity appraisal guide for computational models (VAG-CM), is not an absolute measure of validity, but rather a guide for a more objective appraisal of models in this review. We identified 26 studies published before November 18, 2021 that proposed generative dynamical systems models of time-varying signals in BD. Two raters independently applied the VAG-CM to the included studies, obtaining a mean Cohen’s κ of 0.55 (95% CI [0.45, 0.64]) prior to establishing consensus ratings. Consensus VAG-CM ratings revealed three model/study clusters: data-driven models with face validity, theory-driven models with predictive validity, and theory-driven models lacking all forms of validity. We conclude that future modeling studies should employ a hybrid approach that first operationalizes BD features of interest using empirical data to achieve face validity, followed by explanations of those features using generative models with components that are homologous to physiological or psychological systems involved in BD, to achieve construct validity. Such models would be best developed alongside long-term prospective cohort studies involving a collection of multimodal time-series data. We also encourage future studies to extend, modify, and evaluate the VAG-CM approach for a wider breadth of computational modeling studies and psychiatric disorders.
The alternative splicing of intersectin 1 regulated by PTBP1 promotes human glioma progression
Authors: Lan Chungen , Zhang Huikun , Wang Kezhen , Liu Xiaoli , Zhao Yawen , Guo Zhifang , Zhang Ning , Zhou Yongxia , Gao Manzhi , Gu Feng , Ma Yongjie 
Published: September 2022

AbstractIntersectin 1 (ITSN1) contains two isoforms: ITSN1-S and ITSN1-L, which are highly regulated by alternative splicing. Our previous results showed that the two isoforms of ITSN1 displayed opposite functions: ITSN1-S promoted glioma development, while ITSN1-L exerted an inhibitory role in glioma progression. In this study, our transcriptome analysis using a large glioma cohort indicated that the ratio of ITSN1-S/ITSN1-L was positively correlated with glioma grading and poor prognosis. We identified the RNA-binding protein polypyrimidine tract-binding protein 1 (PTBP1) as an ITSN1 pre-mRNA interaction protein through RNA pull-down assay and RNA immunoprecipitation assay. Knockdown of PTBP1 decreased the ratio of ITSN1-S/ITSN1-L. Minigene reporter assay and mutation analyses further confirmed PTBP1 targeted polypyrimidine sequences on ITSN1 exon 30 (TTGCACTTCAGTATTTT) and promoted the inclusion of ITSN1 exon 30. Subsequently, silencing PTBP1 inhibited glioma cell proliferation, migration, and invasion by down-regulating the ratio of ITSN1-S/ITSN1-L. Taken together, our study provides a novel mechanism that PTBP1 modulates the alternative splicing of ITSN1 and promotes glioma proliferation and motility by up-regulating the ratio of ITSN1-S/ITSN1-L, thereby highlighting that PTBP1 may be an attractive therapeutic target for gliomas.
Two valid and reliable tests for monitoring age-related memory performance and neophobia differences in dogs
Authors: Piotti Patrizia , Piseddu Andrea , Aguzzoli Enrica , Sommese Andrea , Kubinyi Eniko 
Published: September 2022

AbstractThe prolonged lifespan of companion dogs has resulted in increased behavioural and physical challenges linked to old age. The development of behavioural tests to identify and monitor age-related differences has begun. However, standardised testing requires validation. The present study aimed to assess external validity, interobserver reliability, and test–retest reliability of an indoor test battery for the rapid assessment of age-related behavioural differences in dogs. Two experimenters tested young dogs (N = 20, mean age ± SD = 2.7 ± 0.4 years) and old dogs (N = 18, mean age ± SD = 11.8 ± 1.3 years) in the test battery once and then again after two weeks. Our results found external validity for two subtests out of six. On both test occasions, old dogs committed more errors than young dogs in a memory subtest and showed more object avoidance when encountering a novel object. Interobserver reliability and test–retest reliability was high. We conclude that the Memory and Novel object subtests are valid and reliable for monitoring age-related memory performance and object neophobic differences in dogs.
Paradoxically lowered oxygen isotopes of hydrothermally altered minerals by an evolved magmatic water
Authors: Wei Chun-Sheng , Zhao Zi-Fu 
Published: September 2022

AbstractIt has been well known that the influxing meteoric water can hydrothermally lower oxygen and hydrogen isotopes of rocks and/or minerals during continental magmatic or metamorphic processes in certain appropriate cases. Its opposite, however, is not implicitly true and needs independent testing. In terms of a novel procedure recently proposed for dealing with thermodynamic re-equilibration of oxygen isotopes between constituent minerals and water from fossil hydrothermal systems, the initial oxygen isotopes of water ($${\updelta }^{18}{\text{O}}_{\text{W}}^{\text{i}}$$

δ

18

O

W

i

) are theoretically inverted from the early Cretaceous post-collisional granitoids and Triassic gneissic country rock across the Dabie orogen in central-eastern China. Despite ancient meteoric waters with low $${\updelta }^{18}{\text{O}}_{\text{W}}^{\text{i}}$$

δ

18

O

W

i

value down to − 11.01 ± 0.43‰ (one standard deviation, 1SD), oxygen isotopes of hydrothermally altered rock-forming minerals from a granitoid were unexpectedly but concurrently lowered by an evolved magmatic water with mildly high $${\updelta }^{18}{\text{O}}_{\text{W}}^{\text{i}}$$

δ

18

O

W

i

value of 2.81 ± 0.05‰ at 375 °C with a water/rock (W/R)c ratio of 1.78 ± 0.20 for the closed system. The lifetime of fossil hydrothermal systems studied herein is kinetically constrained to no more than 1.2 million years (Myr) via surface-reaction oxygen exchange in the late-stage of continental magmatism or metamorphism. Thereby, caution should be paid when lowered oxygen isotopes of hydrothermally altered rocks and/or minerals were intuitively and/or empirically inferred from the external infiltration of the purely meteoric water with a low $${\updelta }^{18}{\text{O}}_{\text{W}}^{\text{i}}$$

δ

18

O

W

i

value alone.
Research on the matching characteristics of the theoretical digging force of a backhoe hydraulic excavator
Authors: Ren Zhigui , Li Jiahao , Pang Xiaoping , Liu Jurong , Li Tianyu , Yu Songsong 
Published: September 2022

AbstractThe theoretical digging force is the maximum digging resistance that an excavator can overcome, which is an important measure of its digging capacity. To study the matching of the digging capacity with the actual demand and the matching of the working device mechanism, a 36.5 t backhoe hydraulic excavator is used as an example to analyse the distributions of the digging resistance under two different normal digging area working conditions and the maximum digging resistance characteristics of the tool. An appropriate digging postures are selected, based on limit digging force and compound digging force models, the theoretical digging forces under the two working conditions are obtained and matched with the measured digging resistance force values and the limiting factors affecting the digging force. The results show that the average percentage of theoretical digging forces greater than the measured digging resistance under both calculation models is 84.06% rather than 100%. The results of different digging methods all indicate that small chamber locking of the boom cylinder is too often the limiting factor for the digging force, resulting in poor matching of the working device. This study provides guidance for the improvement of the theoretical digging force model and the evaluation of the matching characteristics of the working device.
A novel method for estimating subresolution porosity from CT images and its application to homogeneity evaluation of porous media
Authors: Zhuang Li , Shin Hyu-Soung , Yeom Sun , Pham Chuyen Ngoc , Kim Young-Jae 
Published: September 2022

AbstractWe propose a new method, i.e., the statistical phase fraction (SPF) method, to estimate the total porosity and spatial distribution of local porosities from subresolution pore-dominated X-ray microtomography images of porous materials. The SPF method assumes that a voxel in a CT image is composed of either a single or a maximum of three pure phases of matter (solid, liquid and air). Gaussian function (GF) fitting is conducted on the basis that the summation of the area of each GF curve is equal to the total area covered by the CT histogram. The volume fraction of each phase corresponding to each GF is calculated based on the mean value of the GF, the area of the GF, and the CT numbers for pure phases. The SPF method is verified on three different types of components containing only air and solid phases, i.e., alumina ceramic and two sintered lunar regolith simulants with relatively homogenous and inhomogeneous microstructures. The estimated porosities of a total of 15 specimens (the total porosity ranges from 0 to 51%) via the SPF method show an average error of 3.11% compared with the ground truth. Spatial distribution of local porosities in the defined representative element volume is investigated for homogeneity evaluation. Results show that the local porosity inhomogeneity in the sintered FJS-1 specimens is more prominent than that in the sintered KLS-1 specimens.
The evolutionary footprint of influenza A subtype H3N2 strains in Bangladesh: implication of vaccine strain selection
Authors: Rahman Sezanur , Hasan Mehedi , Alam Md Shaheen , Uddin K. M. Main , Moni Sayra , Rahman Mustafizur 
Published: September 2022

AbstractIn February each year, World Health Organization (WHO) recommends candidate vaccine viruses for the forthcoming northern hemisphere (NH) season; however, the influenza season in the temperate zone of NH begins in October. During egg- or cell culture-propagation, the vaccine viruses become too old to confer the highest match with the latest strains, impacting vaccine effectiveness. Therefore, an alternative strategy like mRNA-based vaccine using the most recent strains should be considered. We analyzed influenza A subtype H3N2 strains circulating in NH during the last 10 years (2009–2020). Phylogenetic analysis revealed multiple clades of influenza strains circulating every season, which had substantial mismatches with WHO-recommended vaccine strains. The clustering pattern suggests that influenza A subtype H3N2 strains are not fixed to the specific geographical region but circulate globally in the same season. By analyzing 39 seasons from eight NH countries with the highest vaccine coverage, we also provide evidence that the influenza A, subtype H3N2 strains from South and Southeast Asia, including Bangladesh, had the highest genetic proximity to the NH strains. Furthermore, insilico analysis showed minimal effect on the Bangladeshi HA protein structure, indicating the stability of Bangladeshi strains. Therefore, we propose that Bangladeshi influenza strains represent genetic makeup that may better fit and serve as the most suitable candidate vaccine viruses for the forthcoming NH season.
Differential transcriptomic responses to heat stress in surface and subterranean diving beetles
Authors: Beasley-Hall Perry G. , Bertozzi Terry , Bradford Tessa M. , Foster Charles S. P. , Jones Karl , Tierney Simon M. , Humphreys William F. , Austin Andrew D. , Cooper Steven J. B. 
Published: September 2022

AbstractSubterranean habitats are generally very stable environments, and as such evolutionary transitions of organisms from surface to subterranean lifestyles may cause considerable shifts in physiology, particularly with respect to thermal tolerance. In this study we compared responses to heat shock at the molecular level in a geographically widespread, surface-dwelling water beetle to a congeneric subterranean species restricted to a single aquifer (Dytiscidae: Hydroporinae). The obligate subterranean beetle Paroster macrosturtensis is known to have a lower thermal tolerance compared to surface lineages (CTmax 38 °C cf. 42–46 °C), but the genetic basis of this physiological difference has not been characterized. We experimentally manipulated the thermal environment of 24 individuals to demonstrate that both species can mount a heat shock response at high temperatures (35 °C), as determined by comparative transcriptomics. However, genes involved in these responses differ between species and a far greater number were differentially expressed in the surface taxon, suggesting it can mount a more robust heat shock response; these data may underpin its higher thermal tolerance compared to subterranean relatives. In contrast, the subterranean species examined not only differentially expressed fewer genes in response to increasing temperatures, but also in the presence of the experimental setup employed here alone. Our results suggest P. macrosturtensis may be comparatively poorly equipped to respond to both thermally induced stress and environmental disturbances more broadly. The molecular findings presented here have conservation implications for P. macrosturtensis and contribute to a growing narrative concerning weakened thermal tolerances in obligate subterranean organisms at the molecular level.
Experimental evidence on improving COVID-19 vaccine outreach among migrant communities on social media
Authors: Tjaden Jasper , Haarmann Esther , Savaskan Nicolai 
Published: September 2022

AbstractStudies from several countries suggest that COVID-19 vaccination rates are lower among migrants compared to the general population. Urgent calls have been made to improve vaccine outreach to migrants, however, there is limited evidence on effective approaches, especially using social media. We assessed a targeted, low-cost, Facebook campaign disseminating COVID-19 vaccine information among Arabic, Turkish and Russian speakers in Germany (N = 888,994). As part of the campaign, we conducted two randomized, online experiments to assess the impact of the advertisement (1) language and (2) depicted messenger (government authority, religious leader, doctor or family). Key outcomes included reach, click-through rates, conversion rates and cost-effectiveness. Within 29 days, the campaign reached 890 thousand Facebook users. On average, 2.3 individuals accessed the advertised COVID-19 vaccination appointment tool for every euro spent on the campaign. Migrants were 2.4 (Arabic), 1.8 (Russian) and 1.2 (Turkish) times more likely to click on advertisements translated to their native language compared to German-language advertisements. Furthermore, findings showed that government representatives can be more successful in engaging migrants online compared to other messengers, despite common claims of lower trust in government institutions among migrants. This study highlights the potential of tailored, and translated, vaccination campaigns on social media for reaching migrants who may be left out by traditional media campaigns.