bluuebunny/crossref_metadata_2025_split huggingface dataset:
Characterization of the biosynthesized intracellular and extracellular plasmonic silver nanoparticles using Bacillus cereus and their catalytic reduction of methylene blue
Authors: Alfryyan Nada , Kordy Mohamed G. M. , Abdel-Gabbar Mohammed , Soliman Hanan A. , Shaban Mohamed 
Published: July 2022

AbstractThe biosynthesis of silver nanoparticles (Ag NPs) has been studied in detail using two different approaches. For the first time, Bacillus cereus is used for one-pot biosynthesis of capsulated Ag NPs, using both intracellular and extracellular approaches. To discriminate between the produced nanostructures by these two approaches, their structures, nanomorphologies, optical properties, hydrodynamic sizes and zeta potentials are studied using different techniques. Fourier-transform infrared spectroscopy was used to identify the bioactive components responsible for the reduction of Ag+ ions into Ag and the growth of stable Ag NPs. Scanning and transmission electron microscopy images displayed spherical and polygon nanomorphology for the intracellular and extracellular biosynthesized Ag NPs. For intracellular and extracellular biosynthesized Ag NPs, a face-centred cubic structure was observed, with average crystallite sizes of 45.4 and 90.8 nm, respectively. In comparison to the noncatalytic reduction test, the catalytic activities of intracellular and extracellular biosynthesized Ag NPs were explored for the reduction of highly concentrated MB dye solution. Extracellular Ag NPs achieved 100% MB reduction efficacy after around 80 min, compared to 50.6% and 24.1% in the presence and absence of intracellular Ag NPs, respectively. The rate of MB reduction was boosted by 22 times with the extracellular catalyst, and by 3 times with the intracellular catalyst. Therefore, the extracellular production process of Ag NPs utilizing Bacillus cereus bacteria might be applied in the industry as a cost-effective way for eliminating the toxic MB dye.
Shift of dietary carbohydrate source from milk to various solid feeds reshapes the rumen and fecal microbiome in calves
Authors: Hartinger Thomas , Pacífico Cátia , Poier Gregor , Terler Georg , Klevenhusen Fenja , Zebeli Qendrim 
Published: July 2022

AbstractThe transition from milk to solid diets drastically impacts the gut microbiome of calves. We explored the microbial communities of ruminal fluid and feces of Holstein calves when fed milk on d 7 of life, and when fed solid feeds based on either medium- or high-quality hay with or without concentrate inclusion (70% in fresh matter) on d 91. Ruminal fluid and feces had distinct microbial compositions already on d 7, showing that niche specialization in early-life gut is rather diet-independent. Changes between d 7 and d 91 were accompanied by a general increase in microbial diversity. Solid diets differed largely in their carbohydrate composition, being reflected in major changes on d 91, whereby concentrate inclusion was the main driver for differences among groups and strongly decreased microbial diversity in both matrices. Fecal enterotyping revealed two clusters: concentrate-supplemented animals had an enterotype prevalent in Prevotella, Succinivibrio and Anaerovibrio, whereas the enterotype of animals without concentrate was dominated by fibrolytic Ruminococcaceae. Hay quality also affected microbial composition and, compared to medium-quality, high-quality hay reduced alpha-diversity metrics. Concluding, our study revealed that concentrate inclusion, more than hay quality, dictates the establishment of niche-specific, microbial communities in the rumen and feces of calves.
Almost complete solution for the NP-hard separability problem of Bell diagonal qutrits
Authors: Popp Christopher , Hiesmayr Beatrix C. 
Published: July 2022

AbstractWith a probability of success of 95% we solve the separability problem for Bell diagonal qutrit states with positive partial transposition (PPT). The separability problem, i.e. distinguishing separable and entangled states, generally lacks an efficient solution due to the existence of bound entangled states. In contrast to free entangled states that can be used for entanglement distillation via local operations and classical communication, these states cannot be detected by the Peres–Horodecki criterion or PPT criterion. We analyze a large family of bipartite qutrit states that can be separable, free entangled or bound entangled. Leveraging a geometrical representation of these states in Euclidean space, novel methods are presented that allow the classification of separable and bound entangled Bell diagonal states in an efficient way. Moreover, the classification allows the precise determination of relative volumes of the classes of separable, free and bound entangled states. In detail, out of all Bell diagonal PPT states $$81.0\% \pm 0.1\%$$

81.0
%
±
0.1
%

are determined to be separable while $$13.9 \pm 0.1\%$$

13.9
±
0.1
%

are bound entangled and only $$5.1 \pm 0.1\%$$

5.1
±
0.1
%

remain unclassified. Moreover, our applied criteria are compared for their effectiveness and relation as detectors of bound entanglement, which reveals that not a single criterion is capable to detect all bound entangled states.
Hidden loss to follow-up among tuberculosis patients managed by public–private mix institutions in South Korea
Authors: Kim Hyung Woo , Park Sohee , Min Jinsoo , Sun Jiyu , Shin Ah Young , Ha Jick Hwan , Park Jae Seuk , Lee Sung-Soon , Lipman Marc , Abubakar Ibrahim , Stagg Helen R. , Kim Ju Sang 
Published: July 2022

AbstractIn South Korea, public–private mix (PPM) was launched in 2011. This retrospective cohort study sought to determine the rate of loss to follow-up (LTFU) among drug-susceptible tuberculosis (DS-TB) patients in all nationwide PPM institutions, and the risk factors for LTFU. National notification data for DS-TB patients diagnosed between August 2011 and July 2014 in PPM institutions were analysed. Determination of LTFU included detection of instances where patients were transferred out, but when they did not attend at other TB centres in the following two months. Univariable and multivariable competing risk models were used to determine risk factors for LTFU. 73,046 patients with 78,485 records were enrolled. Nominally, 3426 (4.4%) of records were LTFU. However, after linking the multiple records in each patient, the percentage of LTFU was 12.3% (9004/73,046). Risk factors for LTFU were: being foreign-born (3.13 (95% CI 2.77–3.53)), prior LTFU (2.31 (2.06–2.59)) and greater distance between the patient’s home and the TB centre (4.27 (4.03–4.53)). ‘Transfer-out’ was a risk factor in patients managed by treatment centres close to home (1.65 (1.49–1.83)), but protective for those attending centres further (0.77 (0.66–0.89)) or far-away (0.52 (0.46–0.59)) from home. By considering the complete picture of a patient’s interactions with healthcare, we identified a much higher level of LTFU than previously documented. This has implications for how outcomes of treatment are reported and argues for a joined-up national approach for the management and surveillance of TB patients, in nations with similar healthcare systems.
Epigenomic insight of lingonberry and health-promoting traits during micropropagation
Authors: Sikdar Arindam , Sharma Umanath , Barua Rajesh , Igamberdiev Abir U. , Debnath Samir C. 
Published: July 2022

AbstractEpigenetic variation plays a role in developmental gene regulation and responses to the environment. An efficient interaction of zeatin-induced cytosine methylation and secondary compounds has been displayed for the first time in tissue-culture shoots/plants of lingonberry (Vaccinium vitis-idaea L.) cultivar Erntedank in vitro (NC1, in a liquid medium; NC2, on a semi-solid medium), ex vitro (NC3, node culture-derived plants; LC1, leaf culture-derived plants) and its cutting-propagated (ED) plants. Through methylation-sensitive amplification polymorphism (MSAP) assay, we observed highest methylated sites in leaf regenerants (LC1) from all primer combinations (108 bands), along with the highest secondary metabolites. The four types of tissue culture-derived shoots/plants (NC1, NC2, NC3, LC1) showed higher methylation bands than cutting propagated donor plants (ED) that exhibited 79 bands of methylation, which is comparatively low. Our study showed more methylation in micropropagated shoots/plants than those derived from ED plants. On the contrary, we observed higher secondary metabolites in ED plants but comparatively less in micropropagated shoots (NC1, NC2) and plants (NC3, LC1).
Spammer detection using multi-classifier information fusion based on evidential reasoning rule
Authors: Liu Shuaitong , Li Xiaojun , Hu Changhua , Yao Junping , Han Xiaoxia , Wang Jie 
Published: July 2022

AbstractSpammer detection is essentially a process of judging the authenticity of users, and thus can be regarded as a classification problem. In order to improve the classification performance, multi-classifier information fusion is usually used to realize the automatic detection of spammers by utilizing the information from multiple classifiers. However, the existing fusion strategies do not reasonably take the uncertainty from the results of different classifiers (views) into account, and the relative importance and reliability of each classifier are not strictly distinguished. Therefore, in order to detect spammers effectively, this paper develops a novel multi-classifier information fusion model based on the evidential reasoning (ER) rule. Firstly, according to the user's characterization strategy, the base classifiers are constructed through the profile-based, content-based and behavior-based. Then, the idea of multi-classifier fusion is combined with the ER rule, and the results of base classifiers are aggregated by considering their weights and reliabilities. Extensive experimental results on the real-world dataset verify the effectiveness of the proposed model.
Assessment of Eurasian lynx reintroduction success and mortality risk in north-west Poland
Authors: Skorupski Jakub , Tracz Magdalena , Tracz Maciej , Śmietana Przemysław 
Published: July 2022

AbstractDespite recent local reintroductions of the Eurasian lynxLynx lynxin central and north-eastern Poland, the increase in its population was not followed by its westward expansion. To address this problem and restore the lynx population in north-western Poland, 61 captive-born individuals of Baltic population origin were released in the province of Western Pomerania in 2019–2021. Prior to their release, all the animals underwent an adaptation training phase. They were then set free according to a hard-release protocol and subsequently monitored by means of GPS telemetry. In order to assess the short-term reintroduction success, the survival and causes of death of the released individuals were studied as a function of sex, age, training time, and release time and place. The overall survival rate was 71.15%, the median survival time 202 days. Most mortality, due to environmental factors, i.e. scabies (> 200 days) or traffic collisions (< 200 days), was recorded during the first 300 days following release. Age, year of release and training time were significantly related to survival, indicating that the older the lynx was when released, the better its survival changes. In contrast, the longer the training time, the poorer were the chances of survival. There was no evidence of any effect of sex, month of release or place of release. Based on these results, recommendations were made for the planning of further releases and measures to manage the restored population.
The effect of metformin on the survival of colorectal cancer patients with type 2 diabetes mellitus
Authors: Tarhini Zeinab , Manceur Kamelia , Magne Julien , Mathonnet Muriel , Jost Jeremy , Christou Niki 
Published: July 2022

AbstractEvidence from previous studies suggests a protective effect of metformin in patients with colorectal cancer (CRC). The aim of this study was to examine the associations between metformin use and overall survival (OS) and disease-free survival (DFS) in CRC patients with type 2 diabetes mellitus (DM). We retrospectively included patients who underwent surgery for CRC at Limoges’ University Hospital between 2005 and 2019 and diagnosed with type 2 DM. Data on the characteristics of patients, CRC, comorbidities and drug exposure were collected from the electronic medical records. The exposure was the use of metformin and the outcomes were OS and DFS. We identified 290 CRC patients with type 2 DM. A total of 144 (49.7%) of them were treated with metformin. Metformin users were significantly younger, with higher body mass index and less diabetes-related complications compared to non-users. The 2-year OS was significantly higher in metformin users than in non-users (86.9 ± 2.9% vs. 71.0 ± 4.0%, p = 0.001). In multivariate analysis, metformin use was associated with better OS (adjusted hazard ratios [aHR] = 0.45 95% confidence interval [95% CI]: 0.21–0.96) and better DFS (aHR = 0.31; 95% CI: 0.18–0.54). In conclusion, the use of metformin may improve OS and DFS in CRC patients with type 2 DM.
Demonstration of a new entity of non-perforated appendicitis through studying cluster of appendicitis
Authors: Guo Yitian , Ye Deqiang , Yang Guifang , Liu Guozhen , Cui Xiaochen , Tan Shiyun , Guo Yi 
Published: July 2022

AbstractDifferential diagnosis and management for perforated appendicitis and non-perforated appendicitis are current hot topics. The aim of this study is to demonstrate a new entity of non-perforated appendicitis, “acute hemorrhagic appendicitis” through studying cluster of acute appendicitis among Tibetan students at a high school in central China. Over the 11-year period, there were 120 patients with more female patients (102 of 499, 20.4%) than male patients (18 of 474, 3.8%) among 973 Tibetan students. 117 patients’ clinical data were available. Clinical manifestations were identical to classic appendicitis. However, axilla temperature, white blood cell counts and neutrophil level were elevated mildly in 12 (10.3%), 19 (16.2%) and 12 (10.3%) patients respectively. Pathologically, the resected appendices exhibited focal or diffuse hemorrhages in mucosa and/or submucosa, and infiltration by eosinophil and by lymphocytes. No patients had perforated appendicitis. The median time from the onset to surgery was 3 days (IQR, 2–4). All patients were discharged with full recovery. In conclusion, “acute hemorrhagic appendicitis” represented a new entity of non-perforated appendicitis with unique cause and pathogenesis, which might be treated with antibiotics alone or self-limited. Studying the cluster is a reliable method to find new entity of appendicitis.
Propensity score matching analysis comparing radical prostatectomy and radiotherapy with androgen deprivation therapy in locally advanced prostate cancer
Authors: Lu Yu-Cheng , Huang Chao-Yuan , Cheng Chia-Hsien , Huang Kuo-How , Lu Yu-Chuan , Chow Po-Ming , Chang Yi-Kai , Pu Yeong-Shiau , Chen Chung-Hsin , Lu Shao-Lun , Lan Keng-Hsueh , Jaw Fu-Shan , Chen Pei-Ling , Hong Jian-Hua 
Published: July 2022

AbstractTo compare clinical outcomes between the use of robotic-assisted laparoscopic radical prostatectomy (RP) and radiotherapy (RT) with long-term androgen deprivation therapy (ADT) in locally advanced prostate cancer (PC), 315 patients with locally advanced PC (clinical T-stage 3/4) were considered for analysis retrospectively. Propensity score-matching at a 1:1 ratio was performed. The median follow-up period was 59.2 months (IQR 39.8–87.4). There were 117 (37.1%) patients in the RP group and 198 (62.9%) patients in the RT group. RT patients were older and had higher PSA at diagnosis, higher Gleason score grade group and more advanced T-stage (all p < 0.001). After propensity score-matching, there were 68 patients in each group. Among locally advanced PC patients, treatment with RP had a higher risk of biochemical recurrence compared to the RT group. In multivariate Cox regression analysis, treatment with RT plus ADT significantly decreased the risk of biochemical failure (HR 0.162, p < 0.001), but there was no significant difference in local recurrence, distant metastasis and overall survival (p = 0.470, p = 0.268 and p = 0.509, respectively). This information supported a clinical benefit in BCR control for patients undergoing RT plus long-term ADT compared to RP.
Aqueous dispersions of oxygen nanobubbles for potential application in inhalation therapy
Authors: Odziomek Marcin , Ulatowski Karol , Dobrowolska Katarzyna , Górniak Izabela , Sobieszuk Paweł , Sosnowski Tomasz R. 
Published: July 2022

AbstractInhalation is a non-invasive method of local drug delivery to the respiratory system. This study analyzed the potential use of aqueous dispersion of oxygen nanobubbles (ADON) as a drug carrier with the additional function of oxygen supplementation to diseased lungs. The suitability of the membrane-based method of ADON preparation and, next, the stability of ADON properties during storage and after aerosolization in nebulizers of various designs (jet, ultrasonic, and two vibrating mesh devices) was investigated. The increased oxygen content in the aerosol generated in two mesh nebulizers suggests that the proposed concept may be helpful in the oxygen supplementation during drug delivery by aerosol inhalation without using an additional oxygen source. This application can increase the overall effectiveness of lung disease treatment and pulmonary rehabilitation.
A preliminary investigation of a two-step, non-invasive process to determine chronological deposition order of fingerprints and printed ink on paper
Authors: King Roberto S. P. , McMurchie Beth , Wilson Richard , Kelly Paul F. 
Published: July 2022

AbstractWhile traditional techniques have long allowed forensic investigators to positively identify fingermarks on documents of interest, understanding the chronological sequence of events that led to their deposition is still seen as a ‘holy grail’ for forensic examinations. By way of example, the question of whether a mark is above or below printed text is crucial. The work herein reveals that a novel application of a recently established fingermark development technique readily allows such differentiation. The process in question allies forensic gelatin lifters with RECOVER, a development system that hinges on the polymerisation of disulfur dinitride. While the latter was specifically developed in its current form for the retrieval of prints from metal surfaces exposed to extreme conditions or washing, its ability to target surface effects allows for visualisation of surface interactions on forensic gelatin lifts. Crucially, in doing so the order in which the lifted material was originally deposited is also revealed. This, therefore, permits clear elucidation of the order of deposition of printed text and fingermarks—and does so both rapidly and in a non-invasive way. This long sought-after capability has the potential to revolutionise forensic document examinations.
Super-resolved fluorescence imaging of peripheral nerve
Authors: Hernández Iván Coto , Mohan Suresh , Minderler Steven , Jowett Nate 
Published: July 2022

AbstractTraditional histopathologic evaluation of peripheral nerve employs brightfield microscopy with diffraction limited resolution of ~ 250 nm. Though electron microscopy yields nanoscale resolution of the nervous system, sample preparation is costly and the technique is incompatible with living samples. Super-resolution microscopy (SRM) comprises a set of imaging techniques that permit nanoscale resolution of fluorescent objects using visible light. The advent of SRM has transformed biomedical science in establishing non-toxic means for investigation of nanoscale cellular structures. Herein, sciatic nerve sections from GFP-variant expressing mice, and regenerating human nerve from cross-facial autografts labelled with a myelin-specific fluorescent dye were imaged by super-resolution radial fluctuation microscopy, stimulated emission depletion microscopy, and structured illumination microscopy. Super-resolution imaging of axial cryosections of murine sciatic nerves yielded robust visualization myelinated and unmyelinated axons. Super-resolution imaging of axial cryosections of human cross-facial nerve grafts demonstrated enhanced resolution of small-caliber thinly-myelinated regenerating motor axons. Resolution and contrast enhancement afforded by super-resolution imaging techniques enables visualization of unmyelinated axons, regenerating axons, cytoskeleton ultrastructure, and neuronal appendages of mammalian peripheral nerves using light microscopes.
The NMDA receptor antagonist ketamine impairs and delays context-dependent decision making in the parietal cortex
Authors: Suda Yuki , Uka Takanori 
Published: July 2022

AbstractFlexible decision making is an indispensable ability for humans. A subanesthetic dose of ketamine, an N-methyl-D-aspartate receptor antagonist, impairs this flexibility in a manner that is similar to patients with schizophrenia; however how it affects neural processes related to decision making remains unclear. Here, we report that ketamine administration impairs neural processing related to context-dependent decision making, and delays the onset of decision making. We recorded single unit activity in the lateral intraparietal area (LIP) while monkeys switched between a direction-discrimination task and a depth-discrimination task. Ketamine impaired choice accuracy for incongruent stimuli that required different decisions depending on the task, for the direction-discrimination task. Neural sensitivity to irrelevant depth information increased with ketamine during direction discrimination in LIP, indicating impaired processing of irrelevant information. Furthermore, the onset of decision-related neural activity was delayed in conjunction with an increased reaction time irrespective of task and stimulus congruency. Neural sensitivity and response onset of the middle temporal area (MT) were not modulated by ketamine, indicating that ketamine worked on neural decision processes downstream of MT. These results suggest that ketamine administration may impair what information to process and when to process it for the purpose of achieving flexible decision making.
Bounding‐box deep calibration for high performance face detection
Authors: Luo Shi , Li Xiongfei , Zhang Xiaoli 
Published: July 2022

AbstractModern convolutional neural networks (CNNs)‐based face detectors have achieved tremendous strides due to large annotated datasets. However, misaligned results with high detection confidence but low localization accuracy restrict the further improvement of detection performance. In this paper, the authors first predict high confidence detection results on the training set itself. Surprisingly, a considerable part of them exist in the same misalignment problem. Then, the authors carefully examine these cases and point out that annotation misalignment is the main reason. Later, a comprehensive discussion is given for the replacement rationality between predicted and annotated bounding‐boxes. Finally, the authors propose a novel Bounding‐Box Deep Calibration (BDC) method to reasonably replace misaligned annotations with model predicted bounding‐boxes and offer calibrated annotations for the training set. Extensive experiments on multiple detectors and two popular benchmark datasets show the effectiveness of BDC on improving models' precision and recall rate, without adding extra inference time and memory consumption. Our simple and effective method provides a general strategy for improving face detection, especially for light‐weight detectors in real‐time situations.