bluuebunny/crossref_metadata_2025_split huggingface dataset:
Fundamental Science and Engineering Questions in Planetary Cave Exploration
Authors: Wynne J. Judson , Titus Timothy N. , Agha‐Mohammadi Ali‐akbar , Azua‐Bustos Armando , Boston Penelope J. , de León Pablo , Demirel‐Floyd Cansu , De Waele Jo , Jones Heather , Malaska Michael J. , Miller Ana Z. , Sapers Haley M. , Sauro Francesco , Sonderegger Derek L. , Uckert Kyle , Wong Uland Y. , Alexander E. Calvin , Chiao Leroy , Cushing Glen E. , DeDecker John , Fairén Alberto G. , Frumkin Amos , Harris Gary L. , Kearney Michelle L. , Kerber Laura , Léveillé Richard J. , Manyapu Kavya , Massironi Matteo , Mylroie John E. , Onac Bogdan P. , Parazynski Scott E. , Phillips‐Lander Charity M. , Prettyman Thomas H. , Schulze‐Makuch Dirk , Wagner Robert V. , Whittaker William L. , Williams Kaj E. 
Published: May 2022

AbstractNearly half a century ago, two papers postulated the likelihood of lunar lava tube caves using mathematical models. Today, armed with an array of orbiting and fly‐by satellites and survey instrumentation, we have now acquired cave data across our solar system—including the identification of potential cave entrances on the Moon, Mars, and at least nine other planetary bodies. These discoveries gave rise to the study of planetary caves. To help advance this field, we leveraged the expertise of an interdisciplinary group to identify a strategy to explore caves beyond Earth. Focusing primarily on astrobiology, the cave environment, geology, robotics, instrumentation, and human exploration, our goal was to produce a framework to guide this subdiscipline through at least the next decade. To do this, we first assembled a list of 198 science and engineering questions. Then, through a series of social surveys, 114 scientists and engineers winnowed down the list to the top 53 highest priority questions. This exercise resulted in identifying emerging and crucial research areas that require robust development to ultimately support a robotic mission to a planetary cave—principally the Moon and/or Mars. With the necessary financial investment and institutional support, the research and technological development required to achieve these necessary advancements over the next decade are attainable. Subsequently, we will be positioned to robotically examine lunar caves and search for evidence of life within Martian caves; in turn, this will set the stage for human exploration and potential habitation of both the lunar and Martian subsurface.
Reappraising the Production and Transfer of Hydrogen Atoms From the Middle to the Upper Atmosphere of Mars at Times of Elevated Water Vapor
Authors: Montmessin F. , Belyaev D. A. , Lefèvre F. , Alday J. , Vals M. , Fedorova A. A. , Korablev O. I. , Trokhimovskiy A. V. , Chaffin M. S. , Schneider N. M. 
Published: May 2022

AbstractWater escape on Mars has recently undergone a paradigm shift with the discovery of unexpected seasonal variations in the population of hydrogen atoms in the exosphere where thermal escape occurs and results in water lost to space. This discovery led to the hypothesis that, contradicting the accepted pathway, atomic hydrogen in the exosphere was not only produced by molecular hydrogen but mostly by high altitude water vapor. Enhanced presence of water at high altitude during southern spring and summer, due to atmospheric warming and intensified transport, favors production of H through photon‐induced ion chemistry of water molecules and thus appears to be the main cause of the observed seasonal variability in escaping hydrogen. This hypothesis is supported by the observation of large concentrations of water vapor between 50 and 150 km during the southern summer solstice and global dust events. Using a simplified yet representative air parcel transport model, we show that in addition to the formation of atomic hydrogen from water photolysis above 80 km, a major fraction of the exospheric hydrogen is formed at altitudes as low as 60 km and is then directly advected to the upper atmosphere. Comparing the injection modes of a variety of events (global dust storm, perihelion periods, and regional storm), we conclude that southern spring/summer controls H production and further ascent into the upper atmosphere on the long term with direct implication for water escape.
Color-preserving passive radiative cooling for an actively temperature-regulated enclosure
Authors: Zhu Yining , Luo Hao , Yang Chenying , Qin Bing , Ghosh Pintu , Kaur Sandeep , Shen Weidong , Qiu Min , Belov Pavel , Li Qiang 
Published: May 2022

AbstractActive temperature control devices are widely used for the thermal management of enclosures, including vehicles and buildings. Passive radiative cooling has been extensively studied; however, its integration with existing actively temperature regulated and decorative enclosures has slipped out of the research at status quo. Here, we present a photonic-engineered dual-side thermal management strategy for reducing the active power consumption of the existing temperature-regulated enclosure without sacrificing its aesthetics. By coating the exterior and interior of the enclosure roof with two visible-transparent films with distinctive wavelength-selectivity, simultaneous control over the energy exchange among the enclosure with the hot sun, the cold outer space, the atmosphere, and the active cooler can be implemented. A power-saving of up to 63% for active coolers of the enclosure is experimentally demonstrated by measuring the heat flux compared to the ordinary enclosure when the set temperature is around 26°C. This photonic-engineered dual-side thermal management strategy offers facile integration with the existing enclosures and represents a new paradigm toward carbon neutrality.
The effects of probiotics plus dietary fiber on antipsychotic-induced weight gain: a randomized clinical trial
Authors: Huang Jing , Liu Chenchen , Yang Ye , Kang Dongyu , Xiao Jingmei , Long Yujun , Lang Bing , Peng Xingjie , Wang Weiyan , Wang Xiaoyi , Liu Fangkun , Zhao Jingping , Shi Zhe , Yuan Ti-Fei , Wu Renrong 
Published: May 2022

AbstractProbiotics plus dietary fiber has demonstrated efficacy in improving metabolic abnormalities. However, the efficacy of probiotics and dietary fiber as well as their association with microbiota in attenuating antipsychotic-induced weight gain and metabolic disturbance remains poorly understood. Here we analyzed results from the double-blind, randomized, placebo-controlled study to compare and evaluate the effects of probiotics, dietary fiber, and their combination for antipsychotic-induced weight gain in patients with a severe mental disorder. We found that probiotics plus dietary fiber was significantly superior to probiotics alone, dietary fiber only, and the placebo for weight, BMI, and total cholesterol reduction; insulin resistance was worse in the placebo group, with significant increases during the 12-week treatment; probiotics plus dietary fiber significantly reduced weight and prevented further deterioration of metabolic disturbances; and probiotics or dietary fiber alone can prevent further weight gain. We further performed 16 S ribosomal RNA sequencing revealed an increased abundance of microbiota after probiotics plus dietary fiber treatment. Moreover, logistic regression analyses revealed that the higher richness of microbiota was associated with favorable weight loss. These findings suggested that probiotics and dietary fiber co-administration were safe and effective interventions to reduce weight gain in patients treated with antipsychotic medications.
Nonlinear mechanics of human mitotic chromosomes
Authors: Meijering Anna E. C. , Sarlós Kata , Nielsen Christian F. , Witt Hannes , Harju Janni , Kerklingh Emma , Haasnoot Guus H. , Bizard Anna H. , Heller Iddo , Broedersz Chase P. , Liu Ying , Peterman Erwin J. G. , Hickson Ian D. , Wuite Gijs J. L. 
Published: May 2022

AbstractIn preparation for mitotic cell division, the nuclear DNA of human cells is compacted into individualized, X-shaped chromosomes1. This metamorphosis is driven mainly by the combined action of condensins and topoisomerase IIα (TOP2A)2,3, and has been observed using microscopy for over a century. Nevertheless, very little is known about the structural organization of a mitotic chromosome. Here we introduce a workflow to interrogate the organization of human chromosomes based on optical trapping and manipulation. This allows high-resolution force measurements and fluorescence visualization of native metaphase chromosomes to be conducted under tightly controlled experimental conditions. We have used this method to extensively characterize chromosome mechanics and structure. Notably, we find that under increasing mechanical load, chromosomes exhibit nonlinear stiffening behaviour, distinct from that predicted by classical polymer models4. To explain this anomalous stiffening, we introduce a hierarchical worm-like chain model that describes the chromosome as a heterogeneous assembly of nonlinear worm-like chains. Moreover, through inducible degradation of TOP2A5specifically in mitosis, we provide evidence that TOP2A has a role in the preservation of chromosome compaction. The methods described here open the door to a wide array of investigations into the structure and dynamics of both normal and disease-associated chromosomes.
3D Reconstruction of cellular images from microfabricated imagers using fully-adaptive deep neural networks
Authors: Najafiaghdam Hossein , Rabbani Rozhan , Gharia Asmaysinh , Papageorgiou Efthymios P. , Anwar Mekhail 
Published: May 2022

AbstractMillimeter-scale multi-cellular level imagers enable various applications, ranging from intraoperative surgical navigation to implantable sensors. However, the tradeoffs for miniaturization compromise resolution, making extracting 3D cell locations challenging—critical for tumor margin assessment and therapy monitoring. This work presents three machine-learning-based modules that extract spatial information from single image acquisitions using custom-made millimeter-scale imagers. The neural networks were trained on synthetically-generated (using Perlin noise) cell images. The first network is a convolutional neural network estimating the depth of a single layer of cells, the second is a deblurring module correcting for the point spread function (PSF). The final module extracts spatial information from a single image acquisition of a 3D specimen and reconstructs cross-sections, by providing a layered “map” of cell locations. The maximum depth error of the first module is 100 µm, with 87% test accuracy. The second module’s PSF correction achieves a least-square-error of only 4%. The third module generates a binary “cell” or “no cell” per-pixel labeling with an accuracy ranging from 89% to 85%. This work demonstrates the synergy between ultra-small silicon-based imagers that enable in vivo imaging but face a trade-off in spatial resolution, and the processing power of neural networks to achieve enhancements beyond conventional linear optimization techniques.
Diagnostic performance of a 5-plex malaria immunoassay in regions co-endemic for Plasmodium falciparum, P. vivax, P. knowlesi, P. malariae and P. ovale
Authors: Kho Steven , Anstey Nicholas M. , Barber Bridget E. , Piera Kim , William Timothy , Kenangalem Enny , McCarthy James S. , Jang Ihn Kyung , Domingo Gonzalo J. , Britton Sumudu , Grigg Matthew J. 
Published: May 2022

AbstractCommercial point-of-care tests remain insufficient for accurately detecting and differentiating low-level malaria infections in regions co-endemic with multiple non-falciparum species, including zoonotic Plasmodium knowlesi (Pk). A 5-plex chemiluminescent assay simultaneously measures pan-Plasmodium lactate dehydrogenase (pLDH), P. falciparum (Pf)-LDH, P. vivax (Pv)-LDH, Pf-histidine-rich protein-2 (HRP2), and C-reactive protein. We assessed its diagnostic performance on whole blood (WB) samples from 102 healthy controls and 306 PCR-confirmed clinical cases of Pf, Pv, Pk, P. malariae (Pm) and P. ovale (Po) mono-infections from Southeast-Asia. We confirm its excellent HRP2-based detection of Pf. Cross-reactivity of Pf-LDH with all non-falciparum species tested was observed (specificity 57.3%). Pv-LDH performance was suboptimal for Pv (93.9% sensitivity and 73.9% specificity). Poor specificity was driven by strong Pk cross-reactivity, with Pv-LDH detecting 93.9% of Pk infections. The pan-LDH-to-Pf-LDH ratio was capable of discerning Pv from Pk, and robustly differentiated Pf from Pm or Po infection, useful in regions with hrp2/3 deletions. We tested the platform’s performance in plasma for the first time, with WB outperforming plasma for all analytes except Pv-LDH for Pk. The platform is a promising tool for WB malaria diagnosis, although further development is warranted to improve its utility in regions co-endemic for multiple non-falciparum species.
Autistic-like behavioral effects of prenatal stress in juvenile Fmr1 mice: the relevance of sex differences and gene–environment interactions
Authors: Petroni Valeria , Subashi Enejda , Premoli Marika , Wöhr Markus , Crusio Wim E. , Lemaire Valerie , Pietropaolo Susanna 
Published: May 2022

AbstractFragile X Syndrome (FXS) is the most common heritable form of mental retardation and monogenic cause of autism spectrum disorder (ASD). FXS is due to a mutation in the X-linked FMR1 gene and is characterized by motor, cognitive and social alterations, mostly overlapping with ASD behavioral phenotypes. The severity of these symptoms and their timing may be exacerbated and/or advanced by environmental adversity interacting with the genetic mutation. We therefore tested the effects of the prenatal exposure to unpredictable chronic stress on the behavioral phenotype of juveniles of both sexes in the Fmr1 knock-out (KO) mouse model of FXS. Mice underwent behavioral tests at 7–8 weeks of age, that is, when most of the relevant behavioral alterations are absent or mild in Fmr1-KOs. Stress induced the early appearance of deficits in spontaneous alternation in KO male mice, without exacerbating the behavioral phenotype of mutant females. In males stress also altered social interaction and communication, but mostly in WT mice, while in females it induced effects on locomotion and communication in mice of both genotypes. Our data therefore highlight the sex-dependent relevance of early environmental stressors to interact with genetic factors to influence the appearance of selected FXS- and ASD-like phenotypes.
Effects of phosphorus-modified biochar as a soil amendment on the growth and quality of Pseudostellaria heterophylla
Authors: Ng Charles Wang Wai , Wang Yu Chen , Ni Jun Jun , So Pui San 
Published: May 2022

AbstractPhosphorus (P) deficiency in agricultural soil is a worldwide concern. P modification of biochar, a common soil conditioner produced by pyrolysis of wastes and residues, can increase P availability and improve soil quality. This study aims to investigate the effects of P-modified biochar as a soil amendment on the growth and quality of a medicinal plant (Pseudostellaria heterophylla). P. heterophylla were grown for 4 months in lateritic soil amended with P-modified and unmodified biochar (peanut shell) at dosages of 0, 3% and 5% (by mass). Compared with unmodified biochar, P-modified biochar reduced available heavy metal Cd in soil by up to 73.0% and osmotic suction in the root zone by up to 49.3%. P-modified biochar application at 3% and 5% promoted the tuber yield of P. heterophylla significantly by 68.6% and 136.0% respectively. This was different from that in unmodified biochar treatment, where tuber yield was stimulated at 3% dosage but inhibited at 5% dosage. The concentrations of active ingredients (i.e., polysaccharides, saponins) in tuber were increased by 2.9–78.8% under P-modified biochar amendment compared with control, indicating the better tuber quality. This study recommended the application of 5% P-modified biochar for promoting the yield and quality of P. heterophylla.
Cordyceps inhibits ceramide biosynthesis and improves insulin resistance and hepatic steatosis
Authors: Li Ying , Talbot Chad Lamar , Chandravanshi Bhawna , Ksiazek Alec , Sood Ayushi , Chowdhury Kamrul Hasan , Maschek J. Alan , Cox James , Babu Adhini Kuppuswamy Satheesh , Paz Henry A. , Babu Pon Velayutham Anandh , Meyerholz David K. , Wankhade Umesh D. , Holland William , Shyong Tai E. , Summers Scott A. , Chaurasia Bhagirath 
Published: May 2022

AbstractEctopic ceramide accumulation in insulin-responsive tissues contributes to the development of obesity and impairs insulin sensitivity. Moreover, pharmacological inhibition of serine palmitoyl transferase (SPT), the first enzyme essential for ceramide biosynthesis using myriocin in rodents reduces body weight and improves insulin sensitivity and associated metabolic indices. Myriocin was originally extracted from fruiting bodies of the fungus Isaria sinclairii and has been found abundant in a number of closely related fungal species such as the Cordyceps. Myriocin is not approved for human use but extracts from Cordyceps are routinely consumed as part of traditional Chinese medication for the treatment of numerous diseases including diabetes. Herein, we screened commercially available extracts of Cordyceps currently being consumed by humans, to identify Cordyceps containing myriocin and test the efficacy of Cordyceps extract containing myriocin in obese mice to improve energy and glucose homeostasis. We demonstrate that commercially available Cordyceps contain variable amounts of myriocin and treatment of mice with a human equivalent dose of Cordyceps extract containing myriocin, reduces ceramide accrual, increases energy expenditure, prevents diet-induced obesity, improves glucose homeostasis and resolves hepatic steatosis. Mechanistically, these beneficial effects were due to increased adipose tissue browning/beiging, improved brown adipose tissue function and hepatic insulin sensitivity as well as alterations in the abundance of gut microbes such as Clostridium and Bilophila. Collectively, our data provide proof-of-principle that myriocin containing Cordyceps extract inhibit ceramide biosynthesis and attenuate metabolic impairments associated with obesity. Moreover, these studies identify commercially available Cordyceps as a readily available supplement to treat obesity and associated metabolic diseases.
Metformin combined with local irradiation provokes abscopal effects in a murine rectal cancer model
Authors: Tojo Mineyuki , Miyato Hideyo , Koinuma Koji , Horie Hisanaga , Tsukui Hidenori , Kimura Yuki , Kaneko Yuki , Ohzawa Hideyuki , Yamaguchi Hironori , Yoshimura Kotaro , Lefor Alan Kawarai , Sata Naohiro , Kitayama Joji 
Published: May 2022

AbstractAlthough preoperative chemoradiation therapy can down-stage locally advanced rectal cancer (LARC), it has little effect on distant metastases. Metformin exerts an anti-cancer effect partly through the activation of host immunity. LuM1, a highly lung metastatic subclone of colon 26, was injected subcutaneously (sc) in BALB/c mice and treated with metformin and/or local radiation (RT). Lung metastases and the primary tumors were evaluated and the phenotypes of immune cells in the spleen and lung metastases were examined with flow cytometry and immunohistochemistry. Local RT, but not metformin, partially delayed the growth of sc tumor which was augmented with metformin. Lung metastases were unchanged in metformin or RT alone, but significantly reduced in the combined therapy. The ratios of splenic T cells tended to be low in the RT group, which were increased by the addition of metformin. IFN-γ production of the splenic CD4(+) and CD8(+) T cells was enhanced and CD49b (+) CD335(+) activated NK cells was increased after combined treatment group. Density of NK cells infiltrating in lung metastases was increased after combination treatment. Metformin effectively enhances local and abscopal effects of RT though the activation of cell-mediated immunity and might be clinically useful for LARC.
Concurrent outcomes from multiple approaches of epistasis analysis for human body mass index associated loci provide insights into obesity biology
Authors: D’Silva Sheldon , Chakraborty Shreya , Kahali Bratati 
Published: May 2022

AbstractGenome wide association studies (GWAS) have focused on elucidating the genetic architecture of complex traits by assessing single variant effects in additive genetic models, albeit explaining a fraction of the trait heritability. Epistasis has recently emerged as one of the intrinsic mechanisms that could explain part of this missing heritability. We conducted epistasis analysis for genome-wide body mass index (BMI) associated SNPs in Alzheimer’s Disease Neuroimaging Initiative (ADNI) and followed up top significant interacting SNPs for replication in the UK Biobank imputed genotype dataset. We report two pairwise epistatic interactions, between rs2177596 (RHBDD1) and rs17759796 (MAPK1), rs1121980 (FTO) and rs6567160 (MC4R), obtained from a consensus of nine different epistatic approaches. Gene interaction maps and tissue expression profiles constructed for these interacting loci highlights co-expression, co-localisation, physical interaction, genetic interaction, and shared pathways emphasising the neuronal influence in obesity and implicating concerted expression of associated genes in liver, pancreas, and adipose tissues insinuating to metabolic abnormalities characterized by obesity. Detecting epistasis could thus be a promising approach to understand the effect of simultaneously interacting multiple genetic loci in disease aetiology, beyond single locus effects.
A catalogue with semantic annotations makes multilabel datasets FAIR
Authors: Kostovska Ana , Bogatinovski Jasmin , Džeroski Sašo , Kocev Dragi , Panov Panče 
Published: May 2022

AbstractMultilabel classification (MLC) is a machine learning task where the goal is to learn to label an example with multiple labels simultaneously. It receives increasing interest from the machine learning community, as evidenced by the increasing number of papers and methods that appear in the literature. Hence, ensuring proper, correct, robust, and trustworthy benchmarking is of utmost importance for the further development of the field. We believe that this can be achieved by adhering to the recently emerged data management standards, such as the FAIR (Findable, Accessible, Interoperable, and Reusable) and TRUST (Transparency, Responsibility, User focus, Sustainability, and Technology) principles. We introduce an ontology-based online catalogue of MLC datasets originating from various application domains following these principles. The catalogue extensively describes many MLC datasets with comprehensible meta-features, MLC-specific semantic descriptions, and different data provenance information. The MLC data catalogue is available at: http://semantichub.ijs.si/MLCdatasets.