bluuebunny/crossref_metadata_2025_split huggingface dataset:
Metaheuristic algorithm integrated neural networks for well-test analyses of petroleum reservoirs
Authors: Kumar Pandey Rakesh , Aggarwal Shrey , Nath Griesha , Kumar Anil , Vaferi Behzad 
Published: October 2022

AbstractIn recent years, well-test research has witnessed several works to automate reservoir model identification and characterization using computer-assisted models. Since the reservoir model identification is a classification problem, while its characterization is a regression-based task, their simultaneous accomplishment is always challenging. This work combines genetic algorithm optimization and artificial neural networks to identify and characterize homogeneous reservoir systems from well-testing data automatically. A total of eight prediction models, including two classifiers and six regressors, have been trained. The simulated well-test pressure derivatives with varying noise percentages comprise the training samples. The feature selection and hyperparameter tuning have been performed carefully using the genetic algorithm to enhance the prediction accuracy. The models were validated using nine simulated and one real-field test case. The optimized classifier identifies all the reservoir models with a classification accuracy higher than 79%. In addition, the statistical analysis approves that the optimized regressors accurately perform the reservoir characterization with mean relative errors of lower than 4.5%. The minimized manual interference reduces human bias, and the models have significant noise tolerance for practical applications.
Serum level of IFNβ distinguishes early from late relapses after biologics withdrawal in rheumatoid arthritis
Authors: Sakashita Eiji , Nagatani Katsuya , Endo Hitoshi , Minota Seiji 
Published: October 2022

AbstractSince the advent of biological disease modifying anti-rheumatic drugs (bDMARDs) in the treatment of rheumatoid arthritis (RA), most RA patients receiving such drugs have achieved remission at the expense of cost and infection risk. After bDMARDs are withdrawn, a substantial proportion of patients would have relapses even if they were in complete remission. In our previous report, relapse prediction could be made at the time of bDMARD withdrawal by measuring the serum levels of five cytokines. We report herein that, among 73 cytokines examined, serum levels of only interferon β (IFNβ) at the time of bDMARD withdrawal could predict early relapse (within 5 months) in patients who were categorized to relapse by the five cytokines in our previous report, with a cut-off value of 3.38 in log2 and AUC of 0.833. High serum levels of IFNβ in the early-relapse group remained high until actual relapse occurred. Therefore, patients who relapse early might be biochemically different from those who relapse late or do not relapse at all. We recommend that patients who are predicted to relapse early continue bDMARDs even if they are in complete remission. This finding contributes to shared decision-making regarding how and when bDMARDs should be discontinued.
Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes
Authors: Mach Núria , Midoux Cédric , Leclercq Sébastien , Pennarun Samuel , Le Moyec Laurence , Rué Olivier , Robert Céline , Sallé Guillaume , Barrey Eric 
Published: October 2022

AbstractEmerging evidence indicates that the gut microbiome contributes to endurance exercise performance. Still, the extent of its functional and metabolic potential remains unknown. Using elite endurance horses as a model system for exercise responsiveness, we built an integrated horse gut gene catalog comprising ~25 million unique genes and 372 metagenome-assembled genomes. This catalog represents 4179 genera spanning 95 phyla and functional capacities primed to exploit energy from dietary, microbial, and host resources. The holo-omics approach shows that gut microbiomes enriched inLachnospiraceaetaxa are negatively associated with cardiovascular capacity. Conversely, more complex and functionally diverse microbiomes are associated with higher glucose concentrations and reduced accumulation of long-chain acylcarnitines and non-esterified fatty acids in plasma, suggesting increased ß-oxidation capacity in the mitochondria. In line with this hypothesis, more fit athletes show upregulation of mitochondrial-related genes involved in energy metabolism, biogenesis, and Ca2+cytosolic transport, all of which are necessary to improve aerobic work power, spare glycogen usage, and enhance cardiovascular capacity. The results identify an associative link between endurance performance and gut microbiome composition and gene function, laying the basis for nutritional interventions that could benefit horse athletes.
Cryo-EM structure-based selection of computed ligand poses enables design of MTA-synergic PRMT5 inhibitors of better potency
Authors: Zhou Wei , Yadav Gaya P. , Yang Xiaozhi , Qin Feng , Li Chenglong , Jiang Qiu-Xing 
Published: October 2022

AbstractProjected potential of 2.5–4.0 Å cryo-EM structures for structure-based drug design is not well realized yet. Here we show that a 3.1 Å structure of PRMT5 is suitable for selecting computed poses of a chemical inhibitor and its analogs for enhanced potency. PRMT5, an oncogenic target for various cancer types, has many inhibitors manifesting little cooperativity with MTA, a co-factor analog accumulated in MTAP−/− cells. To achieve MTA-synergic inhibition, a pharmacophore from virtual screen leads to a specific inhibitor (11-2 F). Cryo-EM structures of 11-2 F / MTA-bound human PRMT5/MEP50 complex and itsapoform resolved at 3.1 and 3.2 Å respectively show that 11-2 F in the catalytic pocket shifts the cofactor-binding pocket away by ~2.0 Å, contributing to positive cooperativity. Computational analysis predicts subtype specificity of 11-2 F among PRMTs. Structural analysis of ligands in the binding pockets is performed to compare poses of 11-2 F and its redesigned analogs and identifies three new analogs predicted to have significantly better potency. One of them, after synthesis, is ~4 fold more efficient in inhibiting PRMT5 catalysis than 11-2 F, with strong MTA-synergy. These data suggest the feasibility of employing near-atomic resolution cryo-EM structures and computational analysis of ligand poses for small molecule therapeutics.
Interpretable machine learning prediction of all-cause mortality
Authors: Qiu Wei , Chen Hugh , Dincer Ayse Berceste , Lundberg Scott , Kaeberlein Matt , Lee Su-In 
Published: October 2022

Abstract
Background
Unlike linear models which are traditionally used to study all-cause mortality, complex machine learning models can capture non-linear interrelations and provide opportunities to identify unexplored risk factors. Explainable artificial intelligence can improve prediction accuracy over linear models and reveal great insights into outcomes like mortality. This paper comprehensively analyzes all-cause mortality by explaining complex machine learning models.

Methods
We propose the IMPACT framework that uses XAI technique to explain a state-of-the-art tree ensemble mortality prediction model. We apply IMPACT to understand all-cause mortality for 1-, 3-, 5-, and 10-year follow-up times within the NHANES dataset, which contains 47,261 samples and 151 features.

Results
We show that IMPACT models achieve higher accuracy than linear models and neural networks. Using IMPACT, we identify several overlooked risk factors and interaction effects. Furthermore, we identify relationships between laboratory features and mortality that may suggest adjusting established reference intervals. Finally, we develop highly accurate, efficient and interpretable mortality risk scores that can be used by medical professionals and individuals without medical expertise. We ensure generalizability by performing temporal validation of the mortality risk scores and external validation of important findings with the UK Biobank dataset.

Conclusions
IMPACT’s unique strength is the explainable prediction, which provides insights into the complex, non-linear relationships between mortality and features, while maintaining high accuracy. Our explainable risk scores could help individuals improve self-awareness of their health status and help clinicians identify patients with high risk. IMPACT takes a consequential step towards bringing contemporary developments in XAI to epidemiology.
Post-Laminectomy Non-Osseous Intraspinal Extradural Tuberculous Granulation Tissue: An Undescribed Entity
Authors: Pachiyappan Jeyaselva Senthilkumar Thotlampatti , Chinnamuthu Sekar 
Published: October 2022

AbstractSpinal tuberculosis (TB) is well studied and described in the literature. It is known to occur anywhere along the transverse plane of the spine. Vertebral TB accounts for less than 1% of all TB infections in the body and more than 50% of musculoskeletal infections. It is considered the most serious type of skeletal TB, with possible neurological symptoms due to compression of neural structures. It may also lead to deformity and significant vertebral structure destruction and instability. Though non-osseous intraspinal extradural tuberculous granulation tissue is reported in several instances, to the best of our knowledge and thorough literature search, the post-laminectomy occurrence of extradural tuberculous granuloma is not reported in the literature so far. Whether it is the reactivation of previously dormant tuberculous infection or naive infection is elusive. Surgical excision and anti-tuberculous therapy is the mainstay of treatment.
Fracturas de la base del quinto metatarsiano: ¿Es útil mi tornillo de esponjosa con rosca parcial? Experiencia de 10 años
Authors: Vera Ramiro , Lagos Leonardo , Vargas Fernando , Henríquez Hugo , Fernández Sergio , Bastías Christian 
Published: October 2022

Resumen
Objetivo Evaluar el resultado quirúrgico de fracturas de las zonas 2 y 3 de la base del quinto metatarsiano usando tornillos de esponjosa de diámetro de 4,0 mm con rosca parcial.
Materiales y métodos Evaluación retrospectiva de pacientes operados entre 2010 a 2019. Incluimos todos los casos sintetizados con este dispositivo con seguimiento mínimo de tres meses, y excluimos casos operados con otros dispositivos y seguimiento menor a tres meses. Evaluamos la consolidación y la presencia de complicaciones. Determinamos el largo del tornillo, el diámetro del canal endomedular, la distancia entre el borde proximal de la tuberosidad y la fractura, y la distancia de paso de la rosca sobre el rasgo de la fractura en radiografías anteroposterior (AP) y oblicua del pie.
Resultados Evaluamos 39 casos, y la muestra tenía una edad promedio de 27 años, y predominio del sexo masculino. El largo de tornillo más usado fue el de 45 mm, y los diámetros promedios del canal endomedular medidos en las radiografías AP y oblicua fueron de 4,6 mm y 3,96 mm, respectivamente. La distancia del borde de la tuberosidad hasta la fractura fue de 25,8 mm, y la distancia de paso de la rosca sobre el rasgo de la fractura fue en promedio de 24 mm. Hubo 100% de consolidación, en un promedio de 9,4 semanas, y 3 casos de retardo de consolidación, 2 de retroceso de tornillo, 1 de rosca intrafoco, y 1 de fractura cortical superior. No hubo retiros de tornillos a la fecha.
Discusión No existe consenso respecto al tornillo ideal. La literatura internacional recomienda dispositivos intramedulares de diámetro de al menos 4,5 mm. Existen pocos reportes del uso de tornillos de diámetro de 4,0 mm.
Conclusiones El tornillo de esponjosa de diámetro de 4,0 mm con rosca parcial es una alternativa eficaz, segura y con baja tasa de complicaciones para el manejo de estas fracturas en nuestra población.
Diagnóstico de roturas del manguito rotador por ecografía y resonancia magnética: ¿La morfología acromial influye en los resultados?
Authors: Meleán Patricio , Rojas Walter , Agloni Mauricio , Droppelmann Guillermo 
Published: October 2022

Resumen
Introducción Actualmente no existen estudios que evalúen la concordancia entre la ecografía (ECO) y la resonancia magnética (RM) observando parámetros como el índice acromial (IA) y el ángulo crítico (AC) para roturas del manguito rotador (MR). Se considera que la mayor cobertura de la huella por un IA o AC incrementados podría afectar la adecuada visualización del MR en estudios de ECO al interponerse entre el complejo tendíneo y el transductor ecográfico.
Objetivo Estimar la concordancia de la ECO y la RM en el diagnóstico de pacientes con roturas del MR confirmadas por artroscopia con IA y AC mayores al promedio normal (0.7 y 35°, respectivamente). Secundariamente, determinar si la concordancia diagnóstica es comparable entre tipos de rotura (espesor completo o parciales).
Materiales y Métodos Estudio retrospectivo de una serie consecutiva de 100 pacientes con roturas totales o parciales del MR confirmadas por artroscopia.
Resultados La edad media del grupo de estudio fue de 55,7 ± 10,5 años. La media del IA fue de 0,77 ± 0,08, y la del AC, de 37,42° ± 5,88°. La concordancia entre la ECO y la RM y el IA fue > 0,7 de 56,7% (K = 0,27; p = 0,01); y < 0,7 de 35,7% (K = 0,01; p = 0,46), respectivamente. Y la concordancia entre la ECO y la RM y el AC fue > 35° de 61,5% (K = 0,32; p = 0,001); y < 35° de 33,3% (K = -0,00; p = 0,52), respectivamente.
Conclusión La concordancia diagnóstica de la ECO comparada con la de la RM, en pacientes con roturas del MR confirmada por artroscopia y con IA y AC mayores al promedio normal, fue justa. La concordancia diagnóstica de la ECO comparada con la RM, en pacientes con IA y AC menores al promedio normal, fue pobre. La capacidad diagnóstica fue similar entre la ECO y la RM para roturas parciales y totales.
Infecciones periprotésicas en artroplastia total de rodilla: ¿Cuál es nuestra realidad?
Authors: Vaisman Alex , Casas-Cordero Juan Pablo , Bianchi Sebastián , Edwards Diego 
Published: October 2022

Resumen
Introducción La infección periprotésica (IPP) es una de las complicaciones más serias en una artroplastia total de rodilla (ATR). Pese a esto, existe poca literatura chilena respecto de esta patología.
Objetivos Determinar la incidencia, las comorbilidades, los microorganismos aislados y su susceptibilidad antibiótica, y la morbimortalidad en pacientes con IPP.
Materiales y Métodos Estudio descriptivo y retrospectivo en pacientes operados entre 2001 y 2020 por gonartrosis, con una ATR primaria, en un mismo centro de salud, con al menos 1 año de seguimiento. Se excluyeron pacientes operados en otros centros o con registros clínicos incompletos. Se registraron las comorbilidades, los microorganismos aislados, la susceptibilidad antibiótica, y la sobrevida por medio de una búsqueda sistemática de las fichas clínicas de los pacientes con IPP. Se utilizó estadística descriptiva para presentar los datos.
Resultados Se incluyeron 544 ATRs, de las cuales 8 (1,47%) presentaron IPP, y los pacientes tenían una edad promedio de presentación de 66 (±5,7) años, e índice de masa corporal (IMC) promedio de 30,3 (±4,5) kg/m2. La mediana de tiempo de presentación de la IPP fue de 411 (±1.034) días. Las principales comorbilidades registradas fueron hipertensión arterial en 5 (62,5%), tabaquismo en 4 (50%) casos, y dislipidemia in 4 (50%) casos. En total, 5 (62,5%) pacientes presentaron etiología polimicrobiana, y en 3 (37,5%) se aisló un solo microorganismo. Los principales agentes aislados fueron Staphylococcus aureus y Staphylococcus coagulasa negativo, ambos multirresistentes, en 6 (75%) y 3 (37,5%) pacientes respectivamente. Todos los pacientes recibieron tres dosis de cefazolina como profilaxis quirúrgica. Se describe una sensibilidad del 100% frente a vancomicina y rifampicina (12/12 cultivos), y una resistencia del 83,4% al ciprofloxacino (4/9 cultivos). Un total de 2 (25%) pacientes fallecieron después de 3 años de la ATR por causas no relacionadas con la IPP. No hubo casos de recidiva infecciosa tras la revisión.
Conclusión Se encontró una incidencia de 1,47% (8 casos) de IPP. Todos los pacientes con IPP presentaron alguna comorbilidad prequirúrgica. Los principales agentes microbiológicos identificados fueron multirresistentes y susceptibles a vancomicina y rifampicina.
Espondilodiscitis por Haemophilus parainfluenzae: Un reporte de caso
Authors: Yurac Ratko , Santorcuato Macarena , Quinteros Guisela , Zamorano Juan J. , Marré Bartolomé 
Published: October 2022

Resumen
Introducción Haemophilus parainfluenzae (HP) es un cocobacilo gram negativo y un patógeno oportunista. Rara vez se asocia a infecciones vertebrales o musculoesqueléticas, y está muy poco reportado en la literatura.
Presentación del caso Una mujer de 45 años, sana, que presentaba un historial de dos semanas de lumbalgia progresiva, fiebre, coriza y congestión nasal, y que tenía discitis intervertebral causada por HP, confirmada por dos hemocultivos positivos y hallazgos progresivos de resonancia magnética (RM) de columna lumbar. Los hallazgos de la RM fueron atípicos, y consistían en un absceso del psoas y pequeñas colecciones de líquido epidural e intraespinal anterior asociadas con espondilodiscitis. El diagnóstico inicial se retrasó debido a que la RM inicial no reveló hallazgos que sugirieran un proceso infeccioso. El tratamiento consistió en un ciclo prolongado de administración intravenosa seguida de antibióticos orales, lo que finalmente produjo una buena respuesta clínica.
Discusión y conclusión El HP es un patógeno muy raro en la espondilodiscitis. No obstante, debe tenerse en cuenta, especialmente en pacientes que presentan lumbalgia y fiebre y/o bacteriemia por microorganismos gram negativos. El estudio inicial debe incluir una RM de la columna con contraste. Aunque es poco común, la espondilodiscitis y un absceso del psoas pueden presentarse concomitantemente. Los antibióticos prolongados son el pilar del tratamiento.
Fratura da cabeça femoral de tipo II de Pipkin: Avaliação biomecânica pelo método de elementos finitos
Authors: Freitas Anderson , Demeneghi Nathallie Campos , Barin Fabrício Reichert , Battaglion Leonardo Rigobello , Pires Robinson Esteves , Giordano Vincenzo 
Published: October 2022

Resumo
Objetivo Avaliar a capacidade biomecânica de duas formas de fixação de fraturas tipo II de Pipkin descrevendo o desvio da fratura no sentido vertical, as tensões máxima e mínima principais, e a tensão equivalente de Von Mises nas sínteses utilizadas.
Materiais e Métodos Dois fixadores internos foram desenvolvidos para tratar a fratura tipo II de Pipkin por meio de elementos finitos: parafuso cortical de 3,5 mm e parafuso de Herbert. Sob as mesmas condições, foram avaliados o desvio da fratura no sentido vertical, as tensões máxima e mínima principais, e a tensão equivalente de Von Mises nas sínteses utilizadas.
Resultados Os deslocamentos verticais avaliados foram de 1,5 mm e 0,5 mm. Os valores de tensão máxima obtidos na região superior do colo femoral foram de 9,7 KPa e 1,3 KPa, e os valores de tensão mínima obtidos na região inferior do colo femoral foram de -8,7KPa e -9,3 KPa. Por fim, os valores de pico da tensão equivalente de Von Mises foram de 7,2 GPa e 2,0 GPa para os modelos de fixação com o uso do parafuso cortical de 3,5 mm e do parafuso de Herbert, respectivamente.
Conclusão O sistema de fixação com parafuso de Herbert gerou os melhores resultados em termos de redução do deslocamento vertical, distribuição da tensão máxima e do pico da tensão equivalente de Von Mises, o que demonstra sua superioridade mecânica comparada à do parafuso cortical de 3,5 mm no tratamento da fratura tipo II de Pipkin.
Ag nanoparticle-modified porous nickel foam nanotemplate: An efficient surface-enhanced Raman scattering platform for the rapid detection of artemisinin
Authors: Yuan Wenzhi , Zhang Zhibin , Wu Yanjun , Shi Guochao , Xu Shiqi 
Published: October 2022

Because of the advantages of rapid sampling and real-time detection, the surface-enhanced Raman scattering (SERS) technique provides greater potential for ultrasensitive detection of active components in traditional Chinese medicine. In this paper, an ultrasensitive SERS detection system was successfully designed using controllable magnetron sputtering technology for the rapid and quantitative detection of artemisinin, a traditional Chinese medicine. Using nickel foam (NF) with a three-dimensional porous mesh structure as a template, Ag nanoparticle layers were sputtered on the NF surface by the magnetron sputtering technique to prepare Ag-NF-20 (the magnetron sputtering time was 20 min) SERS substrates with high SERS performance. According to the SERS signal response of the R6G molecule on the Ag-NF-20 substrate, this efficient SERS platform showed excellent Raman signals and enhanced performance and time-stability. The results suggested that owing to the abundant electromagnetic enhancement “hot spots” distributed on Ag-NF-20 nanostructures, an experimental enhancement factor value of 6.57 × 105 was obtained. The time-stability for 30 days in an atmospheric environment was also determined, which revealed that a minimum decrease of 2.6% in Raman signal intensity was recorded, indicating the excellent time-stability of the Ag-NF-20 substrate. Furthermore, when applying this in the detection of artemisinin, the limit of detection value for artemisinin was 1 × 10−4 ng/ml. Therefore, the Ag-NF-20 SERS substrate has great potential for trace detection of other active ingredients in traditional Chinese medicine and is expected to expand the detection of pharmacodynamic substances in clinical drugs.
Optimization design of 4H–SiC-based betavoltaic battery using 3H source
Authors: Zhang Xue , Zheng Renzhou , Wang Yu , Lu Jingbin , Zhang Yuehui , Chen Ziyi , Liu Yumin , Xu Xu 
Published: October 2022

This paper describes the theoretical calculation and optimization design of the PN junction betavoltaic batteries with 4H–SiC-based energy converter and titanium tritide source. The self-absorption of radioactive isotope sources and the energy deposition distribution in the semiconductor converter are simulated using the Monte Carlo method. The relationship between doping concentrations and basic factors such as minority carrier diffusion lengths and the width of the depletion region are analyzed via the calculation formulas. Then the maximum output power density and energy conversion efficiency are calculated. The optimal thickness of the titanium tritide film is about 0.7 μm, the doping concentrations are 2.5 × 1016 cm−3, and the junction depth of PN junction is 0.1 μm. The surface recombination velocities of electron and hole are 1 × 106 cm/s, respectively. The maximum output power density and energy conversion efficiency are 0.22 μW/cm2 and 2.37%, respectively.
Applications of the Document Towers method of representing document structures
Authors: Atanasiu Vlad 
Published: October 2022

AbstractThis article argues in favor of representing the spatial distribution of information within and between documents, by surveying a broad variety of potential applications, including the entire document lifecycle, multiple sensory modalities, and a large spectrum of tasks and users. The theoretical explanations of this richness are a further facet of the article, and can be summarized as follows: (1) insights emerge from focusing on information structure, rather than information meaning; (2) spatializing information creates new information; (3) simplification increases the polyvalence of representation models; (4) introducing mystery in communication channels motivates discovery and diversifies insights; (5) approaching information design as aGesamtkunstwerkmultiplies the applications; (6) information is a manifestation of a link between structures and the actions these enable, while information design is the art and science of creating such links. The argument is developed around the concrete example of a document structure visualization, the Document Towers, which uses the metaphor of architectural models to represent documents.