bluuebunny/crossref_metadata_2025_split huggingface dataset:
Impact of urban structure on infectious disease spreading
Authors: Aguilar Javier , Bassolas Aleix , Ghoshal Gourab , Hazarie Surendra , Kirkley Alec , Mazzoli Mattia , Meloni Sandro , Mimar Sayat , Nicosia Vincenzo , Ramasco José J. , Sadilek Adam 
Published: March 2022

AbstractThe ongoing SARS-CoV-2 pandemic has been holding the world hostage for several years now. Mobility is key to viral spreading and its restriction is the main non-pharmaceutical interventions to fight the virus expansion. Previous works have shown a connection between the structural organization of cities and the movement patterns of their residents. This puts urban centers in the focus of epidemic surveillance and interventions. Here we show that the organization of urban flows has a tremendous impact on disease spreading and on the amenability of different mitigation strategies. By studying anonymous and aggregated intra-urban flows in a variety of cities in the United States and other countries, and a combination of empirical analysis and analytical methods, we demonstrate that the response of cities to epidemic spreading can be roughly classified in two major types according to the overall organization of those flows. Hierarchical cities, where flows are concentrated primarily between mobility hotspots, are particularly vulnerable to the rapid spread of epidemics. Nevertheless, mobility restrictions in such types of cities are very effective in mitigating the spread of a virus. Conversely, in sprawled cities which present many centers of activity, the spread of an epidemic is much slower, but the response to mobility restrictions is much weaker and less effective. Investing resources on early monitoring and prompt ad-hoc interventions in more vulnerable cities may prove helpful in containing and reducing the impact of future pandemics.
Symbiotic bacteria of the gall-inducing mite Fragariocoptes setiger (Eriophyoidea) and phylogenomic resolution of the eriophyoid position among Acari
Authors: Klimov Pavel B. , Chetverikov Philipp E. , Dodueva Irina E. , Vishnyakov Andrey E. , Bolton Samuel J. , Paponova Svetlana S. , Lutova Ljudmila A. , Tolstikov Andrey V. 
Published: March 2022

AbstractEriophyoid mites represent a hyperdiverse, phytophagous lineage with an unclear phylogenetic position. These mites have succeeded in colonizing nearly every seed plant species, and this evolutionary success was in part due to the mites' ability to induce galls in plants. A gall is a unique niche that provides the inducer of this modification with vital resources. The exact mechanism of gall formation is still not understood, even as to whether it is endogenic (mites directly cause galls) or exogenic (symbiotic microorganisms are involved). Here we (i) investigate the phylogenetic affinities of eriophyoids and (ii) use comparative metagenomics to test the hypothesis that the endosymbionts of eriophyoid mites are involved in gall formation. Our phylogenomic analysis robustly inferred eriophyoids as closely related to Nematalycidae, a group of deep-soil mites belonging to Endeostigmata. Our comparative metagenomics, fluorescence in situ hybridization, and electron microscopy experiments identified two candidate endosymbiotic bacteria shared across samples, however, it is unlikely that they are gall inducers (morphotype1: novel Wolbachia, morphotype2: possibly Agrobacterium tumefaciens). We also detected an array of plant pathogens associated with galls that may be vectored by the mites, and we determined a mite pathogenic virus (Betabaculovirus) that could be tested for using in biocontrol of agricultural pest mites.
Structural and electronic properties of Pt modified Au(100) surface
Authors: Trembułowicz Artur , Sabik Agata , Jurczyszyn Leszek 
Published: March 2022

AbstractInvestigations on electronic and geometric structures of platinum adsorbed on monocrystalline gold surfaces are important for understanding the remarkable catalytic properties of bimetallic Pt–Au systems. Herein, the morphology of quasi-hexagonal (hex) Au(100) surface after deposition of platinum for coverage up to 0.5 monolayer (ML) has been investigated by scanning tunneling microscopy (STM). For coverage range 0.2–0.4 ML the creation of elongated islands with mono-atomic height is observed. The islands consist of flat phase of disordered Pt-Au alloy which coexists with nanowire-like features with a hex atom arrangement and quantized width. Annealing the Pt/Au(100) system at 100–150 °C changes the surface morphology. The islands disappear and the topmost layer of the surface consists of flat phase of Pt–Au alloy which coexists with the hex-stripes. Small domains of ordered c(2 × 2) structure of Pt–Au alloy are found. The electronic properties of this structure have been investigated by ab-initio calculations. The obtained results allow to distinguish the Pt from Au atoms by their appearance in the STM images. The calculated electronic structures indicate a bonding creation between Pt and Au atoms and an electrond-states redistribution of Pt in comparison to the bare Pt(100)-(1 × 1) surface.
A pilot crossover trial assessing the exercise performance patients with chronic obstructive pulmonary disease
Authors: Chao Ke-Yun , Liu Wei-Lun , Nassef Yasser , Lai Pin-Zhen , Wang Jong-Shyan 
Published: March 2022

AbstractNoninvasive ventilation improves exercise performance in patients with chronic obstructive pulmonary disease (COPD). However, the effect of helmet ventilation (HV) on the short-term self-paced exercise performance of patients with COPD remains unclear. This study investigated the use of HV during a 6 min walk test (6MWT) and analyzed its short-term cardiopulmonary outcomes in patients with stable COPD. A single-site crossover trial was conducted in a pulmonary rehabilitation outpatient department. A total of 20 stable patients with COPD without disability were enrolled. The participants performed 6MWTs with and without HV on two consecutive days. The outcome measures were the distance walked in the 6MWT and the physiological and cardiopulmonary parameters. The mean difference in meters walked between the HV-aided and unaided walk tests was 15.4 ± 37.2 (95% confidence interval: − 2.03 to 32.8 m; p = .145). During the 6MWT, the peak heart rate was significantly higher when walking was aided by HV than when it was unaided (p < .001). The energy expenditure index, walking speed, oxygen saturation nadir, and hemodynamic parameters were comparable. Although carbon dioxide levels inside the helmet increased after the walk test, the participants’ transcutaneous carbon dioxide measurements remained unchanged. HV did not improve the short-term self-paced exercise performance in patients with stable mild-to-moderate COPD. Further research should focus on noninvasive ventilation delivered via helmets in exercise training to determine the setting strategy, breathing circuit configuration, and effects of regular exercise.ClinicalTrial.gov: NCT04156724; IRB number: C108032.
Effects of midsole cushioning stiffness on Achilles tendon stretch during running
Authors: Esposito Michael , Wannop John W. , Stefanyshyn Darren J. 
Published: March 2022

AbstractFootwear midsole material can have a direct influence on running performance. However, the exact mechanism of improved performance remains unknown. The purpose of this study was to determine if Achilles tendon energetics could potentially play a role in the performance improvements, by testing if changes in footwear midsole stiffness elicit changes in Achilles tendon stretch. Fourteen runners ran in two footwear conditions while kinematic, kinetic, metabolic and ultrasound data were recorded. There was a moderate positive correlation between the difference in stretch and the difference in performance, which was statistically significant (r(12) = 0.563, p = 0.036). Twelve participants had greater stretch and better performance in the same footwear condition. Based on stretch estimates, the difference between conditions in energy returned from the Achilles tendon was 3.9% of the mechanical energy required per step. Energy return of this magnitude would be relevant and could cause the improved performance observed. These results suggest that increasing energy returned from the Achilles could be a valid mechanism for improving running performance due to changes in footwear. These findings lead the way for future research to further understand internal mechanisms behind improved running performance.
Increased hospitalizations and economic burden in COPD with bronchiectasis: a nationwide representative study
Authors: Kim Youlim , Kim Kyungjoo , Rhee Chin Kook , Ra Seung Won 
Published: March 2022

AbstractWith the increasing use of computed tomography, bronchiectasis has become a common finding in patients with chronic obstructive pulmonary disease (COPD). However, the clinical aspects and medical utilization of COPD with bronchiectasis (BE) remain unclear. We aimed to investigate the BE effect on prognosis and medical utilization in patients with COPD. Among 263,747 COPD patients, we excluded patients lacking chest X-ray, CT, or pulmonary function test codes and classified 2583 GOLD-C/D patients matched according to age, sex, and medical aid as having COPD-BE (447 [17.3%]) and COPD without BE (2136 [82.7%]). Patients with COPD-BE showed a higher rate of acute exacerbation requiring antibiotics than those without BE. Moreover, multivariable analysis showed that BE co-existence was a crucial factor for moderate-to-severe exacerbation (incidence rate ratio [IRR] 1.071; 95% CI 1.012–1.134; p = 0.019). Patients with COPD-BE had a significantly higher rate of exacerbations requiring antibiotics, as well as treatment cost and duration (meant as number of days using hospitalization plus outpatient appointment), than those with COPD without BE (52.64 ± 65.29 vs. 40.19 ± 50.02 days, p < 0.001; 5984.08 ± 8316.96 vs. 4453.40 ± 7291.03 USD, p < 0.001). Compared with patients with COPD without BE, patients with COPD-BE experienced more exacerbations requiring antibiotics, more hospitalizations, and a higher medical cost.
The effect of blood feeding on insecticide resistance intensity and adult longevity in the major malaria vector Anopheles funestus (Diptera: Culicidae)
Authors: Oliver Shüné V. , Lyons Candice L. , Brooke Basil D. 
Published: March 2022

AbstractInsecticide-based vector control is key to the reduction and elimination of malaria. Although insecticide resistance is common in malaria vector populations, the operational implications are often unclear. High intensity pyrethroid resistance in the major malaria vector Anopheles funestus has been linked to control failure in Southern Africa. The aim of this study was to assess linkages between mosquito age, blood feeding and the intensity of pyrethroid resistance in two An. funestus laboratory strains that originate from southern Mozambique, namely the moderately pyrethroid resistant FUMOZ and the highly resistant FUMOZ-R. Resistance tended to decline with age. This effect was significantly mitigated by blood feeding and was most apparent in cohorts that received multiple blood meals. In the absence of insecticide exposure, blood feeding tended to increase longevity of An. funestus females and, following insecticide exposure, enhanced their levels of deltamethrin resistance, even in older age groups. These effects were more marked in FUMOZ-R compared to FUMOZ. In terms of programmatic decision-making, these data suggest that it would be useful to assess the level and intensity of resistance in older female cohorts wherever possible, notwithstanding the standard protocols for resistance testing using age-standardised samples.
Contrasting Early Ordovician assembly patterns highlight the complex initial stages of the Ordovician Radiation
Authors: Saleh Farid , Guenser Pauline , Gibert Corentin , Balseiro Diego , Serra Fernanda , Waisfeld Beatriz G. , Antcliffe Jonathan B. , Daley Allison C. , Mángano M. Gabriela , Buatois Luis A. , Ma Xiaoya , Vizcaïno Daniel , Lefebvre Bertrand 
Published: March 2022

AbstractThe Early Ordovician is a key interval for our understanding of the evolution of life on Earth as it lays at the transition between the Cambrian Explosion and the Ordovician Radiation and because the fossil record of the late Cambrian is scarce. In this study, assembly processes of Early Ordovician trilobite and echinoderm communities from the Central Anti-Atlas (Morocco), the Montagne Noire (France), and the Cordillera Oriental (Argentina) are explored. The results show that dispersal increased diachronically in trilobite communities during the Early Ordovician. Dispersal did not increase for echinoderms. Dispersal was most probably proximally triggered by the planktic revolution, the fall in seawater temperatures, changes in oceanic circulation, with an overall control by tectonic frameworks and phylogenetic constraints. The diachronous increase in dispersal within trilobite communities in the Early Ordovician highlights the complexity of ecosystem structuring during the early stages of the Ordovician Radiation. As Early Ordovician regional dispersal was followed by well-documented continental dispersal in the Middle/Late Ordovician, it is possible to consider that alongside a global increase in taxonomic richness, the Ordovician Radiation is also characterized by a gradual increase in dispersal.
Antibiofilm activity of green synthesized silver nanoparticles against biofilm associated enterococcal urinary pathogens
Authors: Swidan Nada S. , Hashem Yomna A. , Elkhatib Walid F. , Yassien Mahmoud A. 
Published: March 2022

AbstractBiofilm-formed enterococcal urinary tract clinical isolates (n = 92) were used for studying the antibiofilm activity of cinnamon, ginger, and chemical AgNPs. The average particle sizes of cinnamon, ginger, and chemical AgNPs were 8.7, 41.98, and 55.7 nm, respectively. The results of Fourier transform infrared analysis revealed that phytocompounds, such as cinnamaldehyde and gingerol, were the main compounds incorporated in the synthesis of cinnamon and ginger AgNPs, respectively. The purity and crystalline nature of the AgNPs have been confirmed by energy dispersive X-ray and X-ray Diffraction analysis. The results of antimicrobial activity showed that MIC of ginger, cinnamon, and chemical AgNPs were 37.64, 725.7, and 61.08 μg/ml, respectively. On studying the antibiofilm activity of AgNPs at sub-MIC values (1/2, 1/4, and 1/8 MIC), the results revealed that it was concentration dependent. Therefore, further studies were carried out to evaluate the antibiofilm activity of AgNPs at a concentration of 18 μg/ml. The results showed that ginger and chemical AgNPs reduced the formed biofilm to 39.14% and 65.32% and the number of adherent cells on the urinary catheter surface to 42.73% and 69.84%, respectively, as compared to that of the control, while cinnamon AgNPs showed no significant activity. Accordingly, ginger AgNPs had the most potent antibacterial and antiadherent activity against biofilm-associated enterococcal isolates.
Study on the effect of porosity of hollow fiber membrane on humidification performance
Authors: Niu Runping , Jia Xiaoting , Geng Lizhi 
Published: March 2022

AbstractHollow fiber membranes are used in industrial processes widely. Porosity is one of the important parameters affecting the humidification performance of hollow fiber membrane components. The aim of this study was to analyze the effect of porosity of hollow fiber membrane on humidification performance. In order to perform this analysis, a model based on the finite element method was used to simulate numerically the heat and mass transfer under 6 porosity conditions. Five working conditions with different air flow was considered in order to get more data. The results show that when the porosity increases from 0.35 to 0.8, the humidification performance is greatly improved. However, when it increases from 0.8 to 0.9, the humidification performance is almost unchanged. Considering the humidification performance and support strength of hollow fiber membrane, it is suggested to control the porosity of hollow fiber membrane between 0.65 and 0.8.
Observed decrease in light precipitation in part due to urbanization
Authors: Tysa Suonam Kealdrup , Ren Guoyu 
Published: March 2022

AbstractDecrease in light precipitation (LP) frequency has been reported in many regions. However, reason for the decrease remains poorly understood. Here, we quantify urbanization effect on LP (< 3.0 mm day−1) trend in China over the period 1960–2018. We show that urbanization has significantly affected the decreasing LP trend. The urbanization effect becomes more significant as the definition of LP becomes stricter, with the largest effect appearing in trace precipitation change (< 0.3 mm day−1) (LP0.3) during summer and autumn. We estimate that at least 25% of the decreases in LP0.3 days and amount are due to urbanization near the observational stations. Our analysis thus confirms that urbanization has largely contributed to the observed downward trend in LP, and the large-scale change in LP is less than previously believed.
Identification of multiple TAR DNA binding protein retropseudogene lineages during the evolution of primates
Authors: Opazo Juan C. , Zavala Kattina , Vargas-Chacoff Luis , Morera Francisco J. , Mardones Gonzalo A. 
Published: March 2022

AbstractThe TAR DNA Binding Protein (TARDBP) gene has become relevant after the discovery of its several pathogenic mutations. The lack of evolutionary history is in contrast to the amount of studies found in the literature. This study investigated the evolutionary dynamics associated with the retrotransposition of the TARDBP gene in primates. We identified novel retropseudogenes that likely originated in the ancestors of anthropoids, catarrhines, and lemuriformes, i.e. the strepsirrhine clade that inhabit Madagascar. We also found species-specific retropseudogenes in the Philippine tarsier, Bolivian squirrel monkey, capuchin monkey and vervet. The identification of a retropseudocopy of the TARDBP gene overlapping a lncRNA that is potentially expressed opens a new avenue to investigate TARDBP gene regulation, especially in the context of TARDBP associated pathologies.
Clitorin ameliorates western diet-induced hepatic steatosis by regulating lipogenesis and fatty acid oxidation in vivo and in vitro
Authors: Cominguez Divina C. , Park Yea-Jin , Kang Yun-Mi , Nugroho Agung , Kim Suhyun , An Hyo-Jin 
Published: March 2022

AbstractNonalcoholic fatty liver disease (NAFLD) is usually correlated with metabolic diseases, such as obesity, insulin resistance, and hyperglycemia. Herein, we investigated the inhibitory effects and underlying governing mechanism of clitorin in a western diet (WD)-induced hepatic steatosis mouse model, and in oleic acid-stimulated HepG2 cells. Male C57BL/6 mice were fed a normal diet, WD, WD + 10 or 20 mg/kg orlistat, and WD + 10 or 20 mg/kg clitorin. HepG2 cells were treated with 1 mM oleic acid to induce lipid accumulation with or without clitorin. Clitorin significantly alleviated body weight gain and hepatic steatosis features (NAFLD activity score, micro-, and macro-vesicular steatosis) in WD-induced hepatic steatosis mice. Additionally, clitorin significantly decreased protein expressions of sterol regulatory element-binding protein 1 (SREBP1), peroxisome proliferator-activated receptor γ (PPARγ), and CCAAT/enhancer binding protein α (C/EBPα) in WD-induced hepatic steatosis mice. Moreover, clitorin significantly diminished the mRNA levels of SREBP1, acetyl-CoA carboxylase (ACC), fatty acid synthase (FAS), and hydroxy-3-methylglutaryl coenzyme A reductase (HMGCR) and enhanced the mRNA levels of peroxisome proliferator-activated receptor α (PPARα) and carnitine palmitoyltranserase-1 (CTP-1), as well as adenosine monophosphate-activated protein kinase (AMPK) in the liver of WD-induced hepatic steatosis mice and oleic acid-stimulated HepG2 cells. Overall, our findings demonstrated that clitorin can be a potentially efficacious candidate for NAFLD management.
Evolutionary genomic relationships and coupling in MK-STYX and STYX pseudophosphatases
Authors: Qi Yi , Kuang Di , Kelley Kylan , Buchser William J. , Hinton Shantá D. 
Published: March 2022

AbstractThe dual specificity phosphatase (DUSP) family has catalytically inactive members, called pseudophosphatases. They have mutations in their catalytic motifs that render them enzymatically inactive. This study analyzes the significance of two pseudophosphatases, MK-STYX [MAPK (mitogen-activated protein kinase phosphoserine/threonine/tyrosine-binding protein]) and STYX (serine/threonine/tyrosine-interacting protein), throughout their evolution and provides measurements and comparison of their evolutionary conservation. Phylogenetic trees were constructed to show any deviation from various species evolutionary paths. Data was collected on a large set of proteins that have either one of the two domains of MK-STYX, the DUSP domain or the cdc-25 homology (CH2) /rhodanese-like domain. The distance between species pairs for MK-STYX or STYX and Ka/Ks ratio were calculated. In addition, both pseudophosphatases were ranked among a large set of related proteins, including the active homologs of MK-STYX, MKP (MAPK phosphatase)-1 and MKP-3. MK-STYX had one of the highest species-species protein distances and was under weaker purifying selection pressure than most proteins with its domains. In contrast, the protein distances of STYX were lower than 82% of the DUSP-containing proteins and was under one of the strongest purifying selection pressures. However, there was similar selection pressure on the N-terminal sequences of MK-STYX, STYX, MKP-1, and MKP-3. We next perform statistical coupling analysis, a process that reveals interconnected regions within the proteins. We find that while MKP-1,-3, and STYX all have 2 functional units (sectors), MK-STYX only has one, and that MK-STYX is similar to MKP-3 in the evolutionary coupling of the active site and KIM domain. Within those two domains, the mean coupling is also most similar for MK-STYX and MKP-3. This study reveals striking distinctions between the evolutionary patterns of MK-STYX and STYX, suggesting a very specific role for each pseudophosphatase, further highlighting the relevance of these atypical members of DUSP as signaling regulators. Therefore, our study provides computational evidence and evolutionary reasons to further explore the properties of pseudophosphatases, in particular MK-STYX and STYX.