bluuebunny/crossref_metadata_2025_split huggingface dataset:
Cardiac xenotransplantation: from concept to clinic
Authors: Reichart Bruno , Cooper David K C , Längin Matthias , Tönjes Ralf R , Pierson Richard N , Wolf Eckhard 
Published: December 2022

AbstractFor many patients with terminal/advanced cardiac failure, heart transplantation is the most effective, durable treatment option, and offers the best prospects for a high quality of life. The number of potentially life-saving donated human organs is far fewer than the population who could benefit from a new heart, resulting in increasing numbers of patients awaiting replacement of their failing heart, high waitlist mortality, and frequent reliance on interim mechanical support for many of those deemed among the best candidates but who are deteriorating as they wait. Currently, mechanical assist devices supporting left ventricular or biventricular heart function are the only alternative to heart transplant that is in clinical use. Unfortunately, the complication rate with mechanical assistance remains high despite advances in device design and patient selection and management, and the quality of life of the patients even with good outcomes is only moderately improved. Cardiac xenotransplantation from genetically multi-modified (GM) organ-source pigs is an emerging new option as demonstrated by the consistent long-term success of heterotopic (non-life-supporting) abdominal and life-supporting orthotopic porcine heart transplantation in baboons, and by a recent ‘compassionate use’ transplant of the heart from a GM pig with 10 modifications into a terminally ill patient who survived for 2 months. In this review, we discuss pig heart xenotransplantation as a concept, including pathobiological aspects related to immune rejection, coagulation dysregulation, and detrimental overgrowth of the heart, as well as GM strategies in pigs to prevent or minimize these problems. Additional topics discussed include relevant results of heterotopic and orthotopic heart transplantation experiments in the pig-to-baboon model, microbiological and virologic safety concepts, and efficacy requirements for initiating formal clinical trials. An adequate regulatory and ethical framework as well as stringent criteria for the selection of patients will be critical for the safe clinical development of cardiac xenotransplantation, which we expect will be clinically tested during the next few years.
High association strengths are linked to phenotypic similarity, including plumage color and patterns, of participants in mixed-species bird flocks of southwestern China
Authors: Zhou Liping , Mammides Christos , Chen Youfang , Zhou Wenyi , Dai Wenzhang , Braun Edward L , Kimball Rebecca T , Liu Yang , Robinson Scott K , Goodale Eben 
Published: December 2022

Abstract
Participants in mixed-species bird flocks (MSFs) have been shown to associate with species that are similar in body size, diet, and evolutionary history, suggesting that facilitation structures these assemblages. In addition, several studies have suggested that species in MSFs resemble each other in their plumage, but this question has not been systematically investigated for any MSF system. During the nonbreeding season of 2020 and 2021, we sampled 585 MSFs on 14 transects in 2 habitats of Tongbiguang Nature Reserve in western Yunnan Province, China. We performed social network analysis and the Multiple Regression Quadratic Assignment Procedure to evaluate the effect of 4 species traits (body size, overall plumage color, distinctive plumage patterns, and diet) and evolutionary history on species association strength at the whole-MSF and within-MSF levels. All 41 significant relationships showed that species with stronger associations were more similar in their various traits. Body size had the strongest effect on association strength, followed by phylogeny, plumage patterns, and plumage color; diet had the weakest effect. Our results are consistent with the hypotheses that the benefits of associating with phenotypically similar species outweigh the potential costs of interspecific competition, and that trait matching can occur in plumage characteristics, albeit more weakly than in other traits. Several explanations exist as to why similarities in plumage may occur in MSFs, including that they could reduce predators’ ability to target phenotypically “odd” individuals. Whether trait matching in plumage occurs through assortative processes in ecological time or is influenced by co-evolution requires further study.
Implementation of minimally invasive Ivor Lewis esophagectomy: learning curve of a single high-volume center
Authors: Stuart Sanne K , Kuypers Toon J L , Martijnse Ingrid S , Heisterkamp Joos , Matthijsen Robert A 
Published: December 2022

Summary
Open esophagectomy is considered to be the main surgical procedure in the world for esophageal cancer treatment. Implementing a new surgical technique is associated with learning curve morbidity. The objective of this study is to determine the learning curve based on anastomotic leakage (AL) after implementing minimally invasive Ivor Lewis esophagectomy (MI-ILE) in January 2015. All 257 patients who underwent MI-ILE in a single high-volume center between January 2015 and December 2020 were retrospectively included in this study. The learning curve was evaluated using the standard CUSUM analysis with an expected AL rate of 11%. Secondary outcome parameters were postoperative complications, textbook outcome, and lymph node yield divided by the year of operation. Hierarchical binary logistic regression analysis was used to check for potential confounding variables. The CUSUM analysis showed a learning curve of 179 cases. The mean AL rate decreased from 33.3% in 2015 to 9.5% in 2020 (P = 0.007). There was an increase in the mean lymph node yield from 21 in 2018 to 28 in 2019 (P &lt; 0.001) and textbook outcome from 37.3% in 2015 to 66.7% in 2020 (P = 0.005). A newly implemented MI-ILE has a learning curve of 179 patients based on a reference AL rate of 11% using the CUSUM method. Whether future generation surgeons will show similar learning curve numbers, implicating continuous development of different introduction programs of new techniques, will have to be the focus of future research.
A Hepatocyte Nuclear FactorBtabHNF4Mediates Desiccation Tolerance and Fecundity in Whitefly (Bemisia tabaci)
Authors: Wang Kui , Yang Zhifang , Li Xiang , Liu Shunxiao , Wang Liuhao , Zhang Hongwei , Yu Hao 
Published: December 2022

AbstractHepatocyte nuclear factor 4 (HNF4) is essential for glucose homeostasis and lipid metabolism in insects. However, little is known about the role of HNF4 in whiteflies. In the present study, we identified a hepatocyte nuclear factor protein from Bemsia tabaci (Diptera: Drosophilidae) and named it BtabHNF4. The full-length of BtabHNF4 was 3,006 bp, encoding a sequence of 434 amino acids that contains a conserved zinc-finger DNA-binding domain (DBD) and a well-conserved ligand-binding domain (LBD). The temporal and spatial expression showed that BtabHNF4 was highly expressed in the female adult stage and abdominal tissues of B. tabaci. A leaf-mediated RNA interference method was used to explore the function of BtabHNF4 in whiteflies. Our results showed that the knockdown of BtabHNF4 influences the desiccation tolerance, egg production, and egg hatching rate of whiteflies. Additionally, BtabHNF4 silencing significantly inhibited the expression level of vitellogenin. These results expand the function of HNF4 and pave the way for understanding the molecular mechanisms of HNF4 in regulating multiple physiological processes.
Polygenic risk scores for the prediction of cardiometabolic disease
Authors: O’Sullivan Jack W , Ashley Euan A , Elliott Perry M 
Published: December 2022

Abstract
Cardiometabolic diseases contribute more to global morbidity and mortality than any other group of disorders. Polygenic risk scores (PRSs), the weighted summation of individually small-effect genetic variants, represent an advance in our ability to predict the development and complications of cardiometabolic diseases. This article reviews the evidence supporting the use of PRS in seven common cardiometabolic diseases: coronary artery disease (CAD), stroke, hypertension, heart failure and cardiomyopathies, obesity, atrial fibrillation (AF), and type 2 diabetes mellitus (T2DM). Data suggest that PRS for CAD, AF, and T2DM consistently improves prediction when incorporated into existing clinical risk tools. In other areas such as ischaemic stroke and hypertension, clinical application appears premature but emerging evidence suggests that the study of larger and more diverse populations coupled with more granular phenotyping will propel the translation of PRS into practical clinical prediction tools.
Prevention of cardiorenal damage: importance of albuminuria
Authors: Ruilope Luis M , Ortiz Alberto , Lucia Alejandro , Miranda Blanca , Alvarez-Llamas Gloria , Barderas Maria G , Volpe Massimo , Ruiz-Hurtado Gema , Pitt Bertram 
Published: December 2022

AbstractChronic kidney disease (CKD) is projected to become a leading global cause of death by 2040, and its early detection is critical for effective and timely management. The current definition of CKD identifies only advanced stages, when kidney injury has already destroyed &gt;50% of functioning kidney mass as reflected by an estimated glomerular filtration rate &lt;60 mL/min/1.73 m2 or a urinary albumin/creatinine ratio &gt;six-fold higher than physiological levels (i.e. &gt; 30 mg/g). An elevated urinary albumin-excretion rate is a known early predictor of future cardiovascular events. There is thus a ‘blind spot’ in the detection of CKD, when kidney injury is present but is undetectable by current diagnostic criteria, and no intervention is made before renal and cardiovascular damage occurs. The present review discusses the CKD ‘blind spot’ concept and how it may facilitate a holistic approach to CKD and cardiovascular disease prevention and implement the call for albuminuria screening implicit in current guidelines. Cardiorenal risk associated with albuminuria in the high-normal range, novel genetic and biochemical markers of elevated cardiorenal risk, and the role of heart and kidney protective drugs evaluated in recent clinical trials are also discussed. As albuminuria is a major risk factor for cardiovascular and renal disease, starting from levels not yet considered in the definition of CKD, the implementation of opportunistic or systematic albuminuria screening and therapy, possibly complemented with novel early biomarkers, has the potential to improve cardiorenal outcomes and mitigate the dismal 2040 projections for CKD and related cardiovascular burden.
Fluorescencein situhybridization and polymerase chain reaction to detect infections of cardiac implantable electronic devices
Authors: Just Isabell Anna , Barthel Frank , Moter Annette , Kikhney Judith , Friedrich Aljona , Wloch Alexa , Falk Volkmar , Starck Christoph , Schoenrath Felix 
Published: December 2022

AbstractAimsIn patients with infections of cardiac implantable electronic devices (CIEDs), the identification of causative pathogens is complicated by biofilm formations and previous antibiotic therapy. In this work, the impact of an additional fluorescence in situ hybridization (FISH), in combination with polymerase chain reaction and sequencing (FISHseq) was investigated.Methods and resultsIn 36 patients with CIED infections, FISHseq of explanted devices was performed and compared with standard microbiological cultivation of preoperative and intraoperative samples. The mean age was 61.9 (±16.2) years; 25 (69.4%) were males. Most patients (62.9%) had heart failure with reduced ejection fraction. Infections occurred as endoplastits (n = 26), isolated local generator pocket infection (n = 8), or both (n = 2); CIED included cardiac resynchronization therapy defibrillator (n = 17), implantable cardioverter defibrillator (n = 11), and pacemaker (n = 8) devices. The overall positive FISHseq detection rate was 97%. Intraoperatively, pathogens were isolated in 42 vs. 53% in standard cultivation vs. FISHseq, respectively. In 16 of 17 FISHseq-negative patients, the nucleic acid strain DAPI (4′,6-diamidino-2-phenylindole) indicated inactive microorganisms, which were partially organized in biofilms (n = 4) or microcolonies (n = 2). In 13 patients in whom no pathogen was identified preoperatively, standard cultivation and FISHseq identified pathogens in 3 (23%) vs. 8 (62%), respectively. For the confirmation of preoperatively known bacteria, a combined approach was most efficient.ConclusionFluorescence in situ hybridization sequencing is a valuable tool to detect causative microorganisms in CIED infections. The combination of FISHseq with preoperative cultivation showed the highest efficacy in detecting pathogens. Additional cultivation of intraoperative tissue samples or swabs yielded more confirmation of pathogens known from preoperative culture.
Active packaging of poly(lactic acid) nanofibers and essential oils with antifungal action on table grapes
Authors: Brandão Rafaela Magalhães , Batista Luís Roberto , de Oliveira Juliano Elvis , Ferreira Vanuzia Rodrigues Fernandes , Lunguinho Allan da Silva , Nelson David Lee , Cardoso Maria das Graças 
Published: December 2022

Abstract
The table grape is a non-climateric fruit that is very susceptible to fungal contamination, in addition to suffering an accelerated loss of quality during storage. The in vitro and in grape antifungal and antiocratoxigenic effects of the essential oils from Alpinia speciosa and Cymbopogon flexuosus against Aspergillus carbonarius and Aspergillus niger were studied. The oils were encapsulated in poly(lactic acid) (PLA) nanofibers as a potential active packaging to be applied to control the degradation of grapes stored during the post-harvest period. Fungal proliferation and ochratoxin A synthesis in A. carbonarius and A. niger decreased in the presence of the active packaging. However, the nanofiber containing the essential oil from C. flexuosus was more efficient in providing a fungicidal effect against A. carbonarius (10% and 20%) and A. niger (20%). In addition, weight loss and color changes were controlled and the parameters of acidity, °Brix, softening and the texture of the grape were maintained. A very small mass loss of the essential oils encapsulated in nanofibers was observed by thermogravimetric analysis, showing that the nanofiber was efficient in enabling the controlled release. The quality and safety of table grapes were maintained for longer periods of storage in the presence of active packaging, so the incorporation of these oils in nanofibers can be a promising way to increase the shelf life of grapes.
A New Hope: A Hermaphroditic Nematode Enables Analysis of a Recent Whole Genome Duplication Event
Authors: Wighard Sara S , Athanasouli Marina , Witte Hanh , Rödelsperger Christian , Sommer Ralf J 
Published: December 2022

Abstract
Whole genome duplication (WGD) is often considered a major driver of evolution that leads to phenotypic novelties. However, the importance of WGD for evolution is still controversial because most documented WGD events occurred anciently and few experimental systems amenable to genetic analysis are available. Here, we report a recent WGD event in the hermaphroditic nematode Allodiplogaster sudhausi and present a comparison with a gonochoristic (male/female) sister species that did not undergo WGD. Self-fertilizing reproduction of A. sudhausi makes it amenable to functional analysis and an ideal system to study WGD events. We document WGD in A. sudhausi through karyotype analysis and whole genome sequencing, the latter of which allowed us to 1) identify functional bias in retention of protein domains and metabolic pathways, 2) show most duplicate genes are under evolutionary constraint, 3) show a link between sequence and expression divergence, and 4) characterize differentially expressed duplicates. We additionally show WGD is associated with increased body size and an abundance of repeat elements (36% of the genome), including a recent expansion of the DNA-hAT/Ac transposon family. Finally, we demonstrate the use of CRISPR/Cas9 to generate mutant knockouts, whereby two WGD-derived duplicate genes display functional redundancy in that they both need to be knocked out to generate a phenotype. Together, we present a novel experimental system that is convenient for examining and characterizing WGD-derived genes both computationally and functionally.
Gender Differences in Depressive Symptoms Following Child Death in Later Life
Authors: Mellencamp Kagan A 
Published: December 2022

Abstract

Objectives
This study examined short- and long-term psychological adjustment to parental bereavement in later life for mothers and fathers.

Methods
Using 9 waves of data from the United States (1998–2014 Health and Retirement Study), I estimated trajectories of mothers’ and fathers’ depressive symptoms surrounding child death in later life, highlighting gender differences in adjustment. Moderation analyses were performed to uncover heterogeneous trajectories across parental characteristics.

Results
Mothers were more likely to experience child death and reported higher depressive symptoms prior to parental bereavement than fathers. Mothers and fathers who lost a child reported an increase in depressive symptoms that diminished over time. The short-term elevation in depressive symptoms was marginally greater for mothers than fathers, but depressive symptoms declined at a faster rate for mothers than fathers in the years following the death. These counterbalancing changes resulted in mothers and fathers returning to their respective prebereavement levels of depressive symptoms between 2 and 4 years postbereavement. Parental age moderated trajectories distinctly by gender, and the presence of surviving children buffered the impact of child death on depressive symptoms for mothers but not fathers.

Discussion
Mothers more often experience child death in later life and their adjustment process differs from that of fathers, underscoring the salience of gender in shaping how older parents respond to the death of a child. Older parents and mothers without surviving children are vulnerable to prolonged elevations in depressive symptoms following the death of a child in later life.
Isolation or Replenishment? The Case of Partner Network Exclusivity and Partner Loss in Later Life
Authors: Sun Haosen , Schafer Markus H 
Published: December 2022

Abstract

Objectives
People’s partners and spouses often provide a wide range of essential emotional and practical support. As crucial as they may be, a nontrivial segment of the older population appears to limit close discussions to their partner alone, a phenomenon we term “partner network exclusivity.” This network structure could leave people vulnerable to partner losses and subsequent social isolation. The present research has 3 aims: (a) examine the prevalence of partner-exclusive networks among European older adults; (b) consider who is most likely to inhabit such networks; and (c) investigate whether and how individuals in such precarious networks rebalance them in case of partner losses.

Methods
The analysis uses Wave 4 (2011) and Wave 6 (2015) of the Survey of Health, Ageing and Retirement in Europe (SHARE) to perform logistic regression on one’s possession of partner-exclusive networks and the addition of core ties.

Results
More than a quarter of partnered respondents (28.1%) are in partner-exclusive core networks. Men, childless individuals, and those with financial difficulties are most likely to occupy such networks. Individuals in partner exclusivity are especially likely to enlist additional ties upon partner loss. Nevertheless, men and individuals at early old age are relatively unlikely to rebalance their core networks in case of partner death.

Discussion
This study provides new evidence that network replenishment following relationship disruptions is plausible even for those from precarious network settings. Nevertheless, widowhood produces patterns of vulnerability for a subset of older adults in partner-exclusive core networks.
Geodynamic predictions of seismic structure and discontinuity topography of the mantle transition zone
Authors: Papanagnou Isabel , Schuberth Bernhard S A , Thomas Christine 
Published: December 2022

SUMMARYThe mantle transition zone (TZ) is expected to influence vertical mass flow between upper and lower mantle as it hosts a complex set of mineral phase transitions and an increase in viscosity with depth. Still, neither its seismic structure nor its dynamic effects have conclusively been constrained. The seismic discontinuities at around 410 and 660 km depth (‘410’ and ‘660’) are classically associated with phase transitions between olivine polymorphs, the pressure of which is modulated by lateral temperature variations. Resulting discontinuity topography is seismically visible and can thus potentially provide insight on temperature and phase composition at depth. Besides the olivine phase changes, the disassociation of garnet may additionally impact the 660 at higher temperatures. However, the volume of material affected by this garnet transition and its dynamic implications have not yet been quantified. This study presents hypothetical realizations of TZ seismic structure and major discontinuities based on the temperature field of a published 3-D mantle circulation model for a range of relevant mineralogies, including pyrolite and mechanical mixtures (MM). Systematic analysis of these models provides a framework for dynamically informed interpretations of seismic observations and gives insights into the potential dynamic behaviour of the TZ. Using our geodynamic-mineralogical approach we can identify which phase transitions induce specific topographic features of 410 and 660 and quantify their relative impact. Areal proportions of the garnet transition at the 660 are ∼3 and ∼1 per cent for pyrolite and MM, respectively. This proportion could be significantly higher (up to ∼39 per cent) in a hotter mantle for pyrolite, but remains low (&lt;2 per cent) for MM. In pyrolite, both slabs and plumes are found to depress the 660—with average deflections of 14 and 6 km, respectively—due to the influence of garnet at high temperatures indicating its complex dynamic effects on mantle upwellings. Pronounced differences in model characteristics for pyrolite and MM, particularly their relative garnet proportions and associated topography features, could serve to discriminate between the two scenarios in Earth.