bluuebunny/crossref_metadata_2025_split huggingface dataset:
Topological surface currents accessed through reversible hydrogenation of the three-dimensional bulk
Authors: Deng Haiming , Zhao Lukas , Park Kyungwha , Yan Jiaqiang , Sobczak Kamil , Lakra Ayesha , Buzi Entela , Krusin-Elbaum Lia 
Published: April 2022

AbstractHydrogen, the smallest and most abundant element in nature, can be efficiently incorporated within a solid and drastically modify its electronic and structural state. In most semiconductors interstitial hydrogen binds to defects and is known to be amphoteric, namely it can act either as a donor (H+) or an acceptor (H−) of charge, nearly always counteracting the prevailing conductivity type. Here we demonstrate that hydrogenation resolves an outstanding challenge in chalcogenide classes of three-dimensional (3D) topological insulators and magnets — the control of intrinsic bulk conduction that denies access to quantum surface transport, imposing severe thickness limits on the bulk. With electrons donated by a reversible binding of H+ ions to Te(Se) chalcogens, carrier densities are reduced by over 1020cm−3, allowing tuning the Fermi level into the bulk bandgap to enter surface/edge current channels without altering carrier mobility or the bandstructure. The hydrogen-tuned topological nanostructures are stable at room temperature and tunable disregarding bulk size, opening a breadth of device platforms for harnessing emergent topological states.
Remote and precise control over morphology and motion of organic crystals by using magnetic field
Authors: Yang Xuesong , Lan Linfeng , Li Liang , Liu Xiaokong , Naumov Panče , Zhang Hongyu 
Published: April 2022

AbstractElastic organic crystals are the materials foundation of future lightweight flexible electronic, optical and sensing devices, yet precise control over their deformation has not been accomplished. Here, we report a general non-destructive approach to remote bending of organic crystals. Flexible organic crystals are coupled to magnetic nanoparticles to prepare hybrid actuating elements whose shape can be arbitrarily and precisely controlled simply by using magnetic field. The crystals are mechanically and chemically robust, and can be flexed precisely to a predetermined curvature with complete retention of their macroscopic integrity at least several thousand times in contactless mode, in air or in a liquid medium. These crystals are used as optical waveguides whose light output can be precisely and remotely controlled by using a permanent magnet. This approach expands the range of applications of flexible organic crystals beyond the known limitations with other methods for control of their shape, and opens prospects for their direct implementation in flexible devices such as sensors, emitters, and other (opto)electronics.
Periodic formation of epithelial somites from human pluripotent stem cells
Authors: Sanaki-Matsumiya Marina , Matsuda Mitsuhiro , Gritti Nicola , Nakaki Fumio , Sharpe James , Trivedi Vikas , Ebisuya Miki 
Published: April 2022

AbstractDuring embryonic development, epithelial cell blocks called somites are periodically formed according to the segmentation clock, becoming the foundation for the segmental pattern of the vertebral column. The process of somitogenesis has recently been recapitulated with murine and human pluripotent stem cells. However, an in vitro model for human somitogenesis coupled with the segmentation clock and epithelialization is still missing. Here, we report the generation of human somitoids, organoids that periodically form pairs of epithelial somite-like structures. Somitoids display clear oscillations of the segmentation clock that coincide with the segmentation of the presomitic mesoderm. The resulting somites show anterior-posterior and apical-basal polarities. Matrigel is essential for epithelialization but dispensable for the differentiation into somite cells. The size of somites is rather constant, irrespective of the initial cell number. The amount of WNT signaling instructs the proportion of mesodermal lineages in somitoids. Somitoids provide a novel platform to study human somitogenesis.
A sustainable ultra-high strength Fe18Mn3Ti maraging steel through controlled solute segregation and α-Mn nanoprecipitation
Authors: Kwiatkowski da Silva A. , Souza Filho I. R. , Lu W. , Zilnyk K. D. , Hupalo M. F. , Alves L. M. , Ponge D. , Gault B. , Raabe D. 
Published: April 2022

AbstractThe enormous magnitude of 2 billion tons of alloys produced per year demands a change in design philosophy to make materials environmentally, economically, and socially more sustainable. This disqualifies the use of critical elements that are rare or have questionable origin. Amongst the major alloy strengthening mechanisms, a high-dispersion of second-phase precipitates with sizes in the nanometre range is particularly effective for achieving ultra-high strength. Here, we propose an alternative segregation-based strategy for sustainable steels, free of critical elements, which are rendered ultrastrong by second-phase nano-precipitation. We increase the Mn-content in a supersaturated, metastable Fe-Mn solid solution to trigger compositional fluctuations and nano-segregation in the bulk. These fluctuations act as precursors for the nucleation of an unexpected α-Mn phase, which impedes dislocation motion, thus enabling precipitation strengthening. Our steel outperforms most common commercial alloys, yet it is free of critical elements, making it a new platform for sustainable alloy design.
Enabling high energy lithium metal batteries via single-crystal Ni-rich cathode material co-doping strategy
Authors: Ou Xing , Liu Tongchao , Zhong Wentao , Fan Xinming , Guo Xueyi , Huang Xiaojing , Cao Liang , Hu Junhua , Zhang Bao , Chu Yong S. , Hu Guorong , Lin Zhang , Dahbi Mouad , Alami Jones , Amine Khalil , Yang Chenghao , Lu Jun 
Published: April 2022

AbstractHigh-capacity Ni-rich layered oxides are promising cathode materials for secondary lithium-based battery systems. However, their structural instability detrimentally affects the battery performance during cell cycling. Here, we report an Al/Zr co-doped single-crystalline LiNi0.88Co0.09Mn0.03O2(SNCM) cathode material to circumvent the instability issue. We found that soluble Al ions are adequately incorporated in the SNCM lattice while the less soluble Zr ions are prone to aggregate in the outer SNCM surface layer. The synergistic effect of Al/Zr co-doping in SNCM lattice improve the Li-ion mobility, relief the internal strain, and suppress the Li/Ni cation mixing upon cycling at high cut-off voltage. These features improve the cathode rate capability and structural stabilization during prolonged cell cycling. In particular, the Zr-rich surface enables the formation of stable cathode-electrolyte interphase, which prevent SNCM from unwanted reactions with the non-aqueous fluorinated liquid electrolyte solution and avoid Ni dissolution. To prove the practical application of the Al/Zr co-doped SNCM, we assembled a 10.8 Ah pouch cell (using a 100 μm thick Li metal anode) capable of delivering initial specific energy of 504.5 Wh kg−1at 0.1 C and 25 °C.
Printable logic circuits comprising self-assembled protein complexes
Authors: Qiu Xinkai , Chiechi Ryan C. 
Published: April 2022

AbstractThis paper describes the fabrication of digital logic circuits comprising resistors and diodes made from protein complexes and wired together using printed liquid metal electrodes. These resistors and diodes exhibit temperature-independent charge-transport over a distance of approximately 10 nm and require no encapsulation or special handling. The function of the protein complexes is determined entirely by self-assembly. When induced to self-assembly into anisotropic monolayers, the collective action of the aligned dipole moments increases the electrical conductivity of the ensemble in one direction and decreases it in the other. When induced to self-assemble into isotropic monolayers, the dipole moments are randomized and the electrical conductivity is approximately equal in both directions. We demonstrate the robustness and utility of these all-protein logic circuits by constructing pulse modulators based on AND and OR logic gates that function nearly identically to simulated circuits. These results show that digital circuits with useful functionality can be derived from readily obtainable biomolecules using simple, straightforward fabrication techniques that exploit molecular self-assembly, realizing one of the primary goals of molecular electronics.
Determining the depth of surface charging layer of single Prussian blue nanoparticles with pseudocapacitive behaviors
Authors: Niu Ben , Jiang Wenxuan , Jiang Bo , Lv Mengqi , Wang Sa , Wang Wei 
Published: April 2022

AbstractUnderstanding the hybrid charge-storage mechanisms of pseudocapacitive nanomaterials holds promising keys to further improve the performance of energy storage devices. Based on the dependence of the light scattering intensity of single Prussian blue nanoparticles (PBNPs) on their oxidation state during sinusoidal potential modulation at varying frequencies, we present an electro-optical microscopic imaging approach to optically acquire the Faradaic electrochemical impedance spectroscopy (oEIS) of single PBNPs. Here we reveal typical pseudocapacitive behavior with hybrid charge-storage mechanisms depending on the modulation frequency. In the low-frequency range, the optical amplitude is inversely proportional to the square root of the frequency (∆I ∝ f−0.5; diffusion-limited process), while in the high-frequency range, it is inversely proportional to the frequency (∆I ∝ f−1; surface charging process). Because the geometry of single cuboid-shaped PBNPs can be precisely determined by scanning electron microscopy and atomic force microscopy, oEIS of single PBNPs allows the determination of the depth of the surface charging layer, revealing it to be ~2 unit cells regardless of the nanoparticle size.
The effect of alterations of schizophrenia-associated genes on gamma band oscillations
Authors: Metzner Christoph , Mäki-Marttunen Tuomo , Karni Gili , McMahon-Cole Hana , Steuber Volker 
Published: April 2022

AbstractAbnormalities in the synchronized oscillatory activity of neurons in general and, specifically in the gamma band, might play a crucial role in the pathophysiology of schizophrenia. While these changes in oscillatory activity have traditionally been linked to alterations at the synaptic level, we demonstrate here, using computational modeling, that common genetic variants of ion channels can contribute strongly to this effect. Our model of primary auditory cortex highlights multiple schizophrenia-associated genetic variants that reduce gamma power in an auditory steady-state response task. Furthermore, we show that combinations of several of these schizophrenia-associated variants can produce similar effects as the more traditionally considered synaptic changes. Overall, our study provides a mechanistic link between schizophrenia-associated common genetic variants, as identified by genome-wide association studies, and one of the most robust neurophysiological endophenotypes of schizophrenia.
NANOG prion-like assembly mediates DNA bridging to facilitate chromatin reorganization and activation of pluripotency
Authors: Choi Kyoung-Jae , Quan My Diem , Qi Chuangye , Lee Joo-Hyung , Tsoi Phoebe S. , Zahabiyon Mahla , Bajic Aleksandar , Hu Liya , Prasad B. V. Venkataram , Liao Shih-Chu Jeff , Li Wenbo , Ferreon Allan Chris M. , Ferreon Josephine C. 
Published: April 2022

AbstractHuman NANOG expression resets stem cells to ground-state pluripotency. Here we identify the unique features of human NANOG that relate to its dose-sensitive function as a master transcription factor. NANOG is largely disordered, with a C-terminal prion-like domain that phase-transitions to gel-like condensates. Full-length NANOG readily forms higher-order oligomers at low nanomolar concentrations, orders of magnitude lower than typical amyloids. Using single-molecule Förster resonance energy transfer and fluorescence cross-correlation techniques, we show that NANOG oligomerization is essential for bridging DNA elements in vitro. Using chromatin immunoprecipitation sequencing and Hi-C 3.0 in cells, we validate that NANOG prion-like domain assembly is essential for specific DNA recognition and distant chromatin interactions. Our results provide a physical basis for the indispensable role of NANOG in shaping the pluripotent genome. NANOG’s unique ability to form prion-like assemblies could provide a cooperative and concerted DNA bridging mechanism that is essential for chromatin reorganization and dose-sensitive activation of ground-state pluripotency.
Trace removal of benzene vapour using double-walled metal–dipyrazolate frameworks
Authors: He Tao , Kong Xiang-Jing , Bian Zhen-Xing , Zhang Yong-Zheng , Si Guang-Rui , Xie Lin-Hua , Wu Xue-Qian , Huang Hongliang , Chang Ze , Bu Xian-He , Zaworotko Michael J. , Nie Zuo-Ren , Li Jian-Rong 
Published: April 2022

AbstractIn principle, porous physisorbents are attractive candidates for the removal of volatile organic compounds such as benzene by virtue of their low energy for the capture and release of this pollutant. Unfortunately, many physisorbents exhibit weak sorbate–sorbent interactions, resulting in poor selectivity and low uptake when volatile organic compounds are present at trace concentrations. Herein, we report that a family of double-walled metal–dipyrazolate frameworks, BUT-53 to BUT-58, exhibit benzene uptakes at 298 K of 2.47–3.28 mmol g−1 at <10 Pa. Breakthrough experiments revealed that BUT-55, a supramolecular isomer of the metal–organic framework Co(BDP) (H2BDP = 1,4-di(1H-pyrazol-4-yl)benzene), captures trace levels of benzene, producing an air stream with benzene content below acceptable limits. Furthermore, BUT-55 can be regenerated with mild heating. Insight into the performance of BUT-55 comes from the crystal structure of the benzene-loaded phase (C6H6@BUT-55) and density functional theory calculations, which reveal that C–H···X interactions drive the tight binding of benzene. Our results demonstrate that BUT-55 is a recyclable physisorbent that exhibits high affinity and adsorption capacity towards benzene, making it a candidate for environmental remediation of benzene-contaminated gas mixtures.
Thermodynamically coupled biosensors for detecting neutralizing antibodies against SARS-CoV-2 variants
Authors: Zhang Jason Z. , Yeh Hsien-Wei , Walls Alexandra C. , Wicky Basile I. M. , Sprouse Kaitlin R. , VanBlargan Laura A. , Treger Rebecca , Quijano-Rubio Alfredo , Pham Minh N. , Kraft John C. , Haydon Ian C. , Yang Wei , DeWitt Michelle , Bowen John E. , Chow Cameron M. , Carter Lauren , Ravichandran Rashmi , Wener Mark H. , Stewart Lance , Veesler David , Diamond Michael S. , Greninger Alexander L. , Koelle David M. , Baker David 
Published: April 2022

AbstractWe designed a protein biosensor that uses thermodynamic coupling for sensitive and rapid detection of neutralizing antibodies against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants in serum. The biosensor is a switchable, caged luciferase–receptor-binding domain (RBD) construct that detects serum-antibody interference with the binding of virus RBD to angiotensin-converting enzyme 2 (ACE-2) as a proxy for neutralization. Our coupling approach does not require target modification and can better distinguish sample-to-sample differences in analyte binding affinity and abundance than traditional competition-based assays.
Immunogenicity and therapeutic targeting of a public neoantigen derived from mutated PIK3CA
Authors: Chandran Smita S. , Ma Jiaqi , Klatt Martin G. , Dündar Friederike , Bandlamudi Chaitanya , Razavi Pedram , Wen Hannah Y. , Weigelt Britta , Zumbo Paul , Fu Si Ning , Banks Lauren B. , Yi Fei , Vercher Enric , Etxeberria Inaki , Bestman Watchain D. , Da Cruz Paula Arnaud , Aricescu Ilinca S. , Drilon Alexander , Betel Doron , Scheinberg David A. , Baker Brian M. , Klebanoff Christopher A. 
Published: April 2022

AbstractPublic neoantigens (NeoAgs) represent an elite class of shared cancer-specific epitopes derived from recurrently mutated driver genes. Here we describe a high-throughput platform combining single-cell transcriptomic and T cell receptor (TCR) sequencing to establish whether mutant PIK3CA, among the most frequently genomically altered driver oncogenes, generates an immunogenic public NeoAg. Using this strategy, we developed a panel of TCRs that recognize an endogenously processed neopeptide encompassing a common PIK3CA hotspot mutation restricted by the prevalent human leukocyte antigen (HLA)-A*03:01 allele. Mechanistically, immunogenicity to this public NeoAg arises from enhanced neopeptide/HLA complex stability caused by a preferred HLA anchor substitution. Structural studies indicated that the HLA-bound neopeptide presents a comparatively ‘featureless’ surface dominated by the peptide’s backbone. To bind this epitope with high specificity and affinity, we discovered that a lead TCR clinical candidate engages the neopeptide through an extended interface facilitated by an unusually long CDR3β loop. In patients with diverse malignancies, we observed NeoAg clonal conservation and spontaneous immunogenicity to the neoepitope. Finally, adoptive transfer of TCR-engineered T cells led to tumor regression in vivo in mice bearing PIK3CA-mutant tumors but not wild-type PIK3CA tumors. Together, these findings establish the immunogenicity and therapeutic potential of a mutant PIK3CA-derived public NeoAg.
Feline herpesvirus infection and pathology in captive snow leopard
Authors: Wu Qiaoxing , Wu Hongchao , He Shunfu , Liu Yuxiu , Chen Yalei , Qi Xinzhang , Gu Xiangyang , Wen Yifan , Jin Xuelin , Jin Yipeng , Tian Kegong 
Published: April 2022

AbstractFeline herpesvirus type 1 (FHV-1) is a common causative agent of domestic cats’ rhinotracheitis in domestic cats, and it increasingly threatens wild felids worldwide. The endangered snow leopard (Panthera uncia) belongs to the family Felidae, and it is the top predator on the Tibetan Plateau. Here we report the identification and isolation of FHV-1 from three dead captive snow leopards that presented with sneezing and rhinorrhea. To explore the relationship between FHV-1 and their deaths, organs and nasal swabs were collected for histopathology, viral isolation and sequence analysis. The results revealed that all three snow leopards were infected with FHV-1. The first animal died primarily of cerebral infarction and secondary non-suppurative meningoencephalitis that was probably caused by FHV-1. The second animal died mainly of renal failure accompanied by interstitial pneumonia caused by FHV-1. The cause of death for the third animal was likely related to the concurrent reactivation of a latent FHV-1 infection. The gD and gE gene sequence alignment of the isolated FHV-1 isolate strain revealed that the virus likely originated from a domestic cat. It was found that FHV-1 infection can cause different lesions in snow leopards than in domestic cats and is associated with high risk of disease in wild felids. This suggests that there should be increased focus on protecting wild felids against FHV-1 infections originating from domestic cats.
Altered abundances of human immunoglobulin M and immunoglobulin G subclasses in Alzheimer’s disease frontal cortex
Authors: Lekhraj Rukmani , Lalezari Shirin , Aguilan Jennifer T. , Qin Jiyue , Sidoli Simone , Mowrey Wenzhu , Gollamudi Seema , Lalezari Parviz 
Published: April 2022

AbstractThe immune system has been described to play a role in the development of Alzheimer’s disease (AD), but the distribution of immunoglobulins and their subclasses in brain tissue has not been explored. In this study, examination of pathologically diagnosed frontal cortex gray matter revealed significantly higher levels of IgM and IgG in late-stage AD (Braak and Braak stages V and VI) compared to age-matched controls. While levels of IgG2 and IgG4 constant region fragments were higher in late-stage AD, concentration of native–state IgG4 with free Fc regions was increased in AD III and VI. RNA analysis did not support parenchymal B-cell production of IgG4 in AD III and V, indicating possible peripheral or meningeal B-cell involvement. Changes in the profile of IgM, IgG and IgG subclasses in AD frontal cortex may provide insight into understanding disease pathogenesis and progression.
Topological quantum criticality in non-Hermitian extended Kitaev chain
Authors: Rahul S , Sarkar Sujit 
Published: April 2022

AbstractAn attempt is made to study the quantum criticality in non-Hermitian system with topological characterization. We use the zero mode solutions to characterize the topological phases and, criticality and also to construct the phase diagram. The Hermitian counterpart of the model Hamiltonian possess quite a few interesting features such as Majorana zero modes (MZMs) at criticality, unique topological phase transition on the critical line and hence these unique features are of an interest to study in the non-Hermitian case also. We observe a unique behavior of critical lines in presence of non-Hermiticity. We study the topological phase transitions in the non-Hermitian case using parametric curves which also reveal the gap closing point through exceptional points. We study bulk and edge properties of the system where at the edge, the stability dependence behavior of MZMs at criticality is studied and at the bulk we study the effect of non-Hermiticity on the topological phases by investigating the behavior of the critical lines. The study of non-Hermiticity on the critical lines revels the rate of receding of the topological phases with respect to the increase in the value of non-Hermiticity. This work gives a new perspective on topological quantum criticality in non-Hermitian quantum system.
Network pharmacology analysis and experimental validation to explore the mechanism of Bushao Tiaozhi capsule (BSTZC) on hyperlipidemia
Authors: Xiao Guanlin , Zeng Zhihao , Jiang Jieyi , Xu Aili , Li Sumei , Li Yangxue , Chen Zhao , Chen Weitao , Zhang Jingnian , Bi Xiaoli 
Published: April 2022

AbstractBushao Tiaozhi Capsule (BSTZC) is a novel drug in China that is used in clinical practice and has significant therapeutic effects on hyperlipidemia (HLP). In our previous study, BSTZC has a good regulatory effect on lipid metabolism of HLP rats. However, its bioactive compounds, potential targets, and underlying mechanism remain largely unclear. We extracted the active ingredients and targets in BSTZC from the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP) and literature mining. Subsequently, core ingredients, potential targets, and signaling pathways were determined through bioinformatics analysis, including constructed Drug-Ingredient-Gene symbols-Disease (D-I-G-D), protein–protein interaction (PPI), the Gene Ontology (GO), and the Kyoto Encyclopedia of Genes and Genomes (KEGG). Finally, the reliability of the core targets was evaluated using in vivo studies. A total of 36 bioactive ingredients and 209 gene targets were identified in BSTZC. The network analysis revealed that quercetin, kaempferol, wogonin, isorhamnetin, baicalein and luteolin may be the core ingredients. The 26 core targets of BSTZC, including IL-6, TNF, VEGFA, and CASP3, were considered potential therapeutic targets. Furthermore, GO and KEGG analyses indicated that the treatment of HLP by BSTZC might be related to lipopolysaccharide, oxidative stress, inflammatory response and cell proliferation, differentiation and apoptosis. The pathway analysis showed enrichment for different pathways like MAPK signaling pathway, AGE-RAGE signaling pathway in diabetic, IL-17 signaling pathway and TNF signaling pathway. In this study, network pharmacology analysis, and experiment verification were combined, and revealed that BSTZC may regulate key inflammatory markers and apoptosis for ameliorating HLP.