bluuebunny/crossref_metadata_2025_split huggingface dataset:
Network analysis reveals that the tumor suppressor lncRNA GAS5 acts as a double-edged sword in response to DNA damage in gastric cancer
Authors: Gupta Shantanu , Panda Pritam Kumar , Luo Wei , Hashimoto Ronaldo F. , Ahuja Rajeev 
Published: October 2022

AbstractThe lncRNA GAS5 acts as a tumor suppressor and is downregulated in gastric cancer (GC). In contrast, E2F1, an important transcription factor and tumor promoter, directly inhibits miR-34c expression in GC cell lines. Furthermore, in the corresponding GC cell lines, lncRNA GAS5 directly targets E2F1. However, lncRNA GAS5 and miR-34c remain to be studied in conjunction with GC. Here, we present a dynamic Boolean network to classify gene regulation between these two non-coding RNAs (ncRNAs) in GC. This is the first study to show that lncRNA GAS5 can positively regulate miR-34c in GC through a previously unknown molecular pathway coupling lncRNA/miRNA. We compared our network to several in-vivo/in-vitro experiments and obtained an excellent agreement. We revealed that lncRNA GAS5 regulates miR-34c by targeting E2F1. Additionally, we found that lncRNA GAS5, independently of p53, inhibits GC proliferation through the ATM/p38 MAPK signaling pathway. Accordingly, our results support that E2F1 is an engaging target of drug development in tumor growth and aggressive proliferation of GC, and favorable results can be achieved through tumor suppressor lncRNA GAS5/miR-34c axis in GC. Thus, our findings unlock a new avenue for GC treatment in response to DNA damage by these ncRNAs.
Osteopenia is associated with inferior survival in patients undergoing partial hepatectomy for hepatocellular carcinoma
Authors: Meister Franziska Alexandra , Verhoeven Suekran , Mantas Anna , Liu Wen-Jia , Jiang Decan , Heij Lara , Heise Daniel , Bruners Philipp , Lang Sven Arke , Ulmer Tom Florian , Neumann Ulf Peter , Bednarsch Jan , Czigany Zoltan 
Published: October 2022

AbstractOsteopenia is known to be associated with clinical frailty which is linked to inferior outcomes in various clinical scenarios. However, the exact prognostic value of osteopenia in patients undergoing curative intent-surgery for hepatocellular carcinoma (HCC) is not completely understood. This retrospective study was conducted in a cohort of 151 patients who underwent partial hepatectomy for HCC in curative intent at a German university medical center (05/2008–12/2019). Preoperative computed tomography-based segmentation was used to assess osteopenia, and the prognostic impact of pathological changes in bone mineral density (BMD) on perioperative morbidity, mortality, and long-term oncological outcome was analyzed. Five-year overall survival of osteopenic patients was significantly worse compared to those with normal BMD (29% vs. 65%, p = 0.014). In line with this, the probability of disease-free survival at 5 years was significantly worse for patients with osteopenia (21% vs. 64%, p = 0.005). In our multivariable model, osteopenia was confirmed as an independent risk-factor for inferior overall survival (Hazard-ratio 7.743, p = 0.002). Concerning perioperative complications, osteopenic patients performed slightly worse, even though no statistical difference was detected (Clavien-Dindo ≥ 3b; 21% vs. 9%, p = 0.139). The present study confirms osteopenia as an independent risk-factor for inferior survival in patients undergoing partial hepatectomy for HCC in a European cohort. Further studies are warranted to validate these findings.
Point cloud registration of arrester based on scale-invariant points feature histogram
Authors: Zhu Wen , Chen Lingchao , Hou Beiping , Li Weihan , Chen Tianliang , Liang Shixiong 
Published: October 2022

AbstractArrester is an important lightning protection device in the electrical field. The parameters of arrester such as creepage distance, umbrella distance and diameter are important for product quality, but they are difficult to measure because the shape of arrester is irregular. However, the three-dimensional (3D) reconstruction technique is efficient in measuring arrester parameters. The uniform distributed structure of umbrella skirt on the arrester surface restrict the registration of point cloud. In this paper, a scale-invariant points features histogram (SIPFH) descriptor is proposed; the descriptor combines the characteristics of Scale-invariant Feature Transform (SIFT) and fast point feature histogram (FPFH). Moreover, the improved Levenberg-Marquardt (LM) algorithm is presented, the maximum distance of corresponding points in the iterative process is adjusted to realize the local optimization. The point cloud registration method consists of two parts: primary registration method based on SIPFH, and secondary registration method based on improved LM algorithm. Point clouds of different arresters are collected to establish datasets, some of which have interference. Experimental results indicate that the root mean square error of the method is less than 0.02 m; the average running time is 2.7 s, which is$$41.4\%$$41.4%of the conventional method based on FPFH.
Persistent muscle hyperalgesia after adolescent stress is exacerbated by a mild-nociceptive input in adulthood and is associated with microglia activation
Authors: Singaravelu Sathish Kumar , Goitom Alexander Dawit , Graf Akseli Petteri , Moerz Handan , Schilder Andreas , Hoheisel Ulrich , Spanagel Rainer , Treede Rolf-Detlef 
Published: October 2022

AbstractNon-specific low back pain (LBP) is a major global disease burden and childhood adversity predisposes to its development. The mechanisms are largely unknown. Here, we investigated if adversity in young rats augments mechanical hyperalgesia and how spinal cord microglia contribute to this. Adolescent rats underwent restraint stress, control animals were handled. In adulthood, all rats received two intramuscular injections of NGF/saline or both into the lumbar multifidus muscle. Stress induced in rats at adolescence lowered low back pressure pain threshold (PPT; p = 0.0001) and paw withdrawal threshold (PWT; p = 0.0007). The lowered muscle PPT persisted throughout adulthood (p = 0.012). A subsequent NGF in adulthood lowered only PPT (d = 0.87). Immunohistochemistry revealed changes in microglia morphology: stress followed by NGF induced a significant increase in ameboid state (p < 0.05). Repeated NGF injections without stress showed significantly increased cell size in surveilling and bushy states (p < 0.05). Thus, stress in adolescence induced persistent muscle hyperalgesia that can be enhanced by a mild-nociceptive input. The accompanying morphological changes in microglia differ between priming by adolescent stress and by nociceptive inputs. This novel rodent model shows that adolescent stress is a risk factor for the development of LBP in adulthood and that morphological changes in microglia are signs of spinal mechanisms involved.
Sleep pattern, healthy lifestyle and colorectal cancer incidence
Authors: Chen Jie , Chen Nanqian , Huang Tao , Huang Ninghao , Zhuang Zhenhuang , Liang Hailun 
Published: October 2022

AbstractResearchers have identified an association between lifestyle factors and colorectal cancer (CRC) risk. This study examined the relationship between sleep patterns and CRC events. 392,252 individuals were sampled from the UK Biobank. Chronotype, sleep duration, insomnia, snoring, and excessive daytime sleepiness were combined to measure a healthy sleep score. A number of healthy sleep factors were defined, along with factors for healthy lifestyle scores. Using Cox proportional hazards regression, computed hazard ratios (HRs) were used to examine the associations between sleep patterns, healthy lifestyles, and the incidence of CRC. Healthy sleep scores were inversely associated with CRC events. The HRs for CRC were 0.90 (95% CI, 0.88–0.92) and 0.95 (95% CI, 0.92–0.98) for a 1-point healthy sleep score increase among males and females. When analyzing sleep components, sleeping 7–8 h/day, no frequent insomnia, no snoring, and no frequent daytime sleepiness were independently associated with a 9%, 14%, 8%, and 14% lower risk of CRC, respectively, whilst healthy lifestyle scores were inversely associated with CRC incidence across all models. Sleep pattern and lifestyle are significantly correlated with CRC risk. The healthier the subject’s lifestyle and sleep pattern, the lower their CRC risk.
Non-invasive brain stimulation modulates GABAergic activity in neurofibromatosis 1
Authors: Garg Shruti , Williams Steve , Jung JeYoung , Pobric Gorana , Nandi Tulika , Lim Ben , Vassallo Grace , Green Jonathan , Evans D. Gareth , Stagg Charlotte J. , Parkes Laura M. , Stivaros Stavros 
Published: October 2022

AbstractNeurofibromatosis 1 (NF1) is a single-gene disorder associated with cognitive phenotypes common to neurodevelopmental conditions such as autism. GABAergic dysregulation underlies working memory impairments seen in NF1. This mechanistic experimental study investigates whether application of anodal transcranial direct current stimulation (atDCS) can modulate GABA and working memory in NF1. Thirty-one NF1 adolescents 11–18 years, were recruited to this single-blind sham-controlled cross-over randomized trial. AtDCS or sham stimulation was applied to the left Dorsolateral Prefrontal Cortex (DLPFC) and MR Spectroscopy was collected before and after intervention in the left DLPFC and occipital cortex. Task-related functional MRI was collected before, during, and after stimulation. Higher baseline GABA+ in the left DLPFC was associated with faster response times on baseline working memory measures. AtDCS was seen to significantly reduced GABA+ and increase brain activation in the left DLPFC as compared to sham stimulation. Task performance was worse in the aTDCS group during stimulation but no group differences in behavioural outcomes were observed at the end of stimulation. Although our study suggests aTDCS modulates inhibitory activity in the DLPFC, further work is needed to determine whether repeated sessions of atDCS and strategies such as alternating current stimulation offer a better therapeutic approach.
Comparative analysis of the immune response to RFA and cryoablation in a colon cancer mouse model
Authors: Mauda-Havakuk Michal , Hawken Natalie M. , Owen Joshua W. , Mikhail Andrew S. , Saxena Ankit , Karim Baktiar , Wakim Paul G. , Pritchard William F. , Karanian John W. , Wood Bradford J. 
Published: October 2022

AbstractThe immune response to radiofrequency ablation (RFA) and cryoablation (CRA) was characterized and compared in a colon cancer mouse model. All studies were conducted under a research protocol approved by the National Institutes of Health, Clinical Center, Animal Care and Use Committee. BALB/cJ mice were inoculated with CT26 cells, and randomized to RFA, CRA, or sham treatment. Mice were sacrificed 3 days post-treatment, and tumor, spleen, and serum were harvested. Cell death was determined by Caspase-3 immunohistochemical and TUNEL stains. Immune response was analyzed using flow cytometry, serum cytokine assay and immunohistochemistry. Cell death, necrosis, and apoptosis induced by ablation were comparable in RFA and CRA. Decreased frequency of systemic T-regulatory cells was found in the CRA group. Both RFA and CRA reduced frequencies of several myeloid-derived suppressor cell (MDSC) subpopulations. RFA induced pro-inflammatory cytokine secretion including TNF-α and IL-12 as well as anti-inflammatory cytokines IL-5, and IL-10. CRA augmented secretion of a wider array of cytokines compared to RFA with both pro- and anti-inflammatory properties including IL-1β, IL-5, IL-6, IL-10, and KC GRO. In the tumor microenvironment, RFA reduced the number of T-regulatory cells, a finding not observed with CRA. Reduction of immune suppression via decreases in T-regulatory cells and MDSC was found to be induced by RFA or CRA. CRA augmented a wider range of cytokines than RFA, which were mainly pro-inflammatory, but also anti-inflammatory. In the tumor microenvironment, RFA demonstrated more pronounced anti-tumoral immunity. Further delineation of specific immunomodulation induced by ablation could inform drug-device development and may play a role in future hypothesis-driven immunomodulatory paradigms that combine immunotherapy drugs with tumor destruction for the treatment of metastatic colon cancer.
Corneal Langerhans cells in children with celiac disease
Authors: Gad Hoda , Mohammed Ibrahim , Saraswathi Saras , Al-Jarrah Bara , Ferdousi Maryam , Petropoulos Ioannis N. , Ponirakis Georgios , Khan Adnan , Singh Parul , Al Khodor Souhaila , Elawad Mamoun , Almasri Wesam , Abdelrahman Hatim , Hussain Khalid , Hendaus Mohamed A. , Al-Mudahka Fatma , Abouhazima Khaled , Akobeng Anthony K. , Malik Rayaz A. 
Published: October 2022

AbstractCeliac disease (CeD) is a common small bowel enteropathy characterized by an altered adaptive immune system and increased mucosal antigen presenting cells. This study aims to establish if quantification of corneal Langerhans cells (LCs) using corneal confocal microscopy (CCM) could act as a surrogate marker for antigen presenting cell status and hence disease activity in children with CeD. Twenty children with stable CeD and 20 age-matched controls underwent CCM and quantification of central corneal total, mature and immature LC density. There was no difference in age (11.78 ± 1.7 vs. 12.83 ± 1.91; P = 0.077) or height (1.38 ± 0.14 vs. 1.44 ± 0.13; P = 0.125). BMI (18.81 ± 3.90 vs. 22.26 ± 5.47; P = 0.031) and 25 OHD levels (43.50 ± 13.36 vs. 59.77 ± 22.45; P = 0.014) were significantly lower in children with CeD compared to controls. The total (33.33(16.67–59.37) vs. 51.56(30.21–85.42); P = 0.343), immature (33.33(16.67–52.08) vs. 44.79(29.17–82.29); P = 0.752) and mature (1.56(0–5) vs. 1.56(1.04–8.33); P = 0.752) LC density did not differ between the CeD and control groups. However, immature (r = 0.535, P = 0.015), mature (r = 0.464, P = 0.039), and total (r = 0.548, P = 0.012) LC density correlated with age. Immature (r = 0.602, P = 0.038) and total (r = 0.637, P = 0.026) LC density also correlated with tissue transglutaminase antibody (Anti-TtG) levels assessed in 12/20 subjects with CeD. There was no difference in corneal LC density between children with CeD and controls. However, the correlation between corneal LC density and anti-TtG levels suggests a relationship with disease activity in CeD and requires further study.
Intermediate snowpack melt-out dates guarantee the highest seasonal grasslands greening in the Pyrenees
Authors: Revuelto J. , Gómez D. , Alonso-González E. , Vidaller I. , Rojas-Heredia F. , Deschamps-Berger C. , García-Jiménez J. , Rodríguez-López G. , Sobrino J. , Montorio R. , Perez-Cabello F. , López-Moreno J. I. 
Published: October 2022

AbstractIn mountain areas, the phenology and productivity of grassland are closely related to snow dynamics. However, the influence that snow melt timing has on grassland growing still needs further attention for a full understanding, particularly at high spatial resolution. Aiming to reduce this knowledge gap, this work exploits 1 m resolution snow depth and Normalized Difference Vegetation Index observations acquired with an Unmanned Aerial Vehicle at a sub-alpine site in the Pyrenees. During two snow seasons (2019–2020 and 2020–2021), 14 NDVI and 17 snow depth distributions were acquired over 48 ha. Despite the snow dynamics being different in the two seasons, the response of grasslands greening to snow melt-out exhibited a very similar pattern in both. The NDVI temporal evolution in areas with distinct melt-out dates reveals that sectors where the melt-out date occurs in late April or early May (optimum melt-out) reach the maximum vegetation productivity. Zones with an earlier or a later melt-out rarely reach peak NDVI values. The results obtained in this study area, suggest that knowledge about snow depth distribution is not needed to understand NDVI grassland dynamics. The analysis did not reveal a clear link between the spatial variability in snow duration and the diversity and richness of grassland communities within the study area.
Quantification of pathological gait parameter thresholds of idiopathic normal pressure hydrocephalus patients in clinical gait analysis
Authors: Möhwald Ken , Wuehr Max , Decker Julian , Asch Eric-Manuel , Schenkel Fabian , Illigens Ben , Schniepp Roman 
Published: October 2022

AbstractThe aim of the study was to distinguish the hypokinetic gait disorder in idiopathic normal pressure hydrocephalus (NPH) patients from the gait decline in the elderly population by quantifying pathological gait parameter thresholds utilizing a multiple condition gait assessment. 55 NPH patients and 55 age-matched healthy subjects underwent a standardized gait assessment with eight gait conditions. Spatiotemporal gait parameters were assessed through a pressure-sensitive carpet. Statistical analysis consisted of a binary logistic regression (BLR) model, logistic curve-fit evaluated by a Chi-square goodness-of-fit-test, receiver operating characteristic models with area under the curves (AUC), and inverse BLR. Most discriminative gait parameter thresholds were observed in pace, gait cycle, and support gait domains. The most distinct gait conditions were preferred walking speed and semantic dual task. During preferred walking speed, the most significant gait parameter thresholds were stride length ≤ 1.02 m (sensitivity 0.93/specificity 0.91/AUC 0.96), gait velocity ≤ 0.83 m/s (0.80/0.91/0.93), double support phase ≥ 27.0% (0.96/0.76/0.91), and stride length coefficient of variation ≥ 3.4% (0.93/0.72/0.90). In conclusion, the hypokinetic gait disorder in NPH can be quantitatively differentiated from gait patterns of the elderly population. In future studies, this approach may be useful to differentiate clinical entities with similar gait disorders utilizing instrumented gait analysis procedures.
Automated detection of patterned single-cells within hydrogel using deep learning
Authors: Debnath Tanmay , Hattori Ren , Okamoto Shunya , Shibata Takayuki , Santra Tuhin Subhra , Nagai Moeto 
Published: October 2022

AbstractSingle-cell analysis has been widely used in various biomedical engineering applications, ranging from cancer diagnostics, and immune response monitoring to drug screening. Single-cell isolation is fundamental for observing single-cell activities and an automatic finding method of accurate and reliable cell detection with few possible human errors is also essential. This paper reports trapping single cells into photo patternable hydrogel microwell arrays and isolating them. Additionally, we present an object detection-based DL algorithm that detects single cells in microwell arrays and predicts the presence of cells in resource-limited environments at the highest possible mAP (mean average precision) of 0.989 with an average inference time of 0.06 s. This algorithm leads to the enhancement of the high-throughput single-cell analysis, establishing high detection precision and reduced experimentation time.
Identification of repurposed drugs targeting significant long non-coding RNAs in the cross-talk between diabetes mellitus and Alzheimer’s disease
Authors: Ghiam Shokoofeh , Eslahchi Changiz , Shahpasand Koorosh , Habibi-Rezaei Mehran , Gharaghani Sajjad 
Published: October 2022

AbstractThe relationship between diabetes mellitus (DM) and Alzheimer’s disease (AD) is so strong that scientists called it “brain diabetes”. According to several studies, the critical factor in this relationship is brain insulin resistance. Due to the rapid global spread of both diseases, overcoming this cross-talk has a significant impact on societies. Long non-coding RNAs (lncRNAs), on the other hand, have a substantial impact on complex diseases due to their ability to influence gene expression via a variety of mechanisms. Consequently, the regulation of lncRNA expression in chronic diseases permits the development of innovative therapeutic techniques. However, developing a new drug requires considerable time and money. Recently repurposing existing drugs has gained popularity due to the use of low-risk compounds, which may result in cost and time savings. in this study, we identified drug repurposing candidates capable of controlling the expression of common lncRNAs in the cross-talk between DM and AD. We also utilized drugs that interfered with this cross-talk. To do this, high degree common lncRNAs were extracted from microRNA-lncRNA bipartite network. The drugs that interact with the specified lncRNAs were then collected from multiple data sources. These drugs, referred to as set D, were classified in to positive (D+) and negative (D−) groups based on their effects on the expression of the interacting lncRNAs. A feature selection algorithm was used to select six important features for D. Using a random forest classifier, these features were capable of classifying D+ and D− with an accuracy of 82.5%. Finally, the same six features were extracted for the most recently Food and Drug Administration (FDA) approved drugs in order to identify those with the highest likelihood of belonging to D+ or D−. The most significant FDA-approved positive drugs, chromium nicotinate and tapentadol, were presented as repurposing candidates, while cefepime and dihydro-alpha-ergocryptine were recommended as significant adverse drugs. Moreover, two natural compounds, curcumin and quercetin, were recommended to prevent this cross-talk. According to the previous studies, less attention has been paid to the role of lncRNAs in this cross-talk. Our research not only did identify important lncRNAs, but it also suggested potential repurposed drugs to control them.
Spatial variations in vegetation fires and emissions in South and Southeast Asia during COVID-19 and pre-pandemic
Authors: Vadrevu Krishna , Eaturu Aditya , Casadaban Emily , Lasko Kristofer , Schroeder Wilfrid , Biswas Sumalika , Giglio Louis , Justice Chris 
Published: October 2022

AbstractVegetation fires are common in South/Southeast Asian (SA/SEA) countries. However, very few studies focused on vegetation fires and the changes during the COVID as compared to pre-pandemic. This study fills an information gap and reports total fire incidences, total burnt area, type of vegetation burnt, and total particulate matter emission variations in SA/SEA during COVID-2020 and pre-pandemic (2012–2019). Results from the short-term 2020-COVID versus 2019-non-COVID year showed a decline in fire counts varying from − 2.88 to 79.43% in S/SEA. The exceptions in South Asia include Afghanistan and Sri Lanka, with a 152% and 4.9% increase, and Cambodia and Myanmar in Southeast Asia, with an 11.1% and 8.5% increase in fire counts in the 2020-COVID year. The burnt area decline for 2020 compared to 2019 varied from − 0.8% to 92% for South/Southeast Asian countries, with most burning in agricultural landscapes than forests. Several patches in S/SEA showed a decrease in fires for the 2020 pandemic year compared to long term 2012–2020 pre-pandemic record, with Z scores greater or less than two denoting statistical significance. However, on a country scale, the results were not statistically significant in both S/SEA, with Z scores ranging from − 0.24 to − 1, although most countries experienced a decrease in fire counts. The associated mean TPM emissions declined from ~ 2.31 Tg (0.73stdev) during 2012–2019 to 2.0 (0.65stdev)Tg in 2020 in South Asia and 6.83 (0.70stdev)Tg during 2012–2019 to 5.71 (0.69 stdev)Tg in 2020 for South East Asian countries. The study highlights variations in fires and emissions useful for fire management and mitigation.