bluuebunny/crossref_metadata_2025_split huggingface dataset:
Novel 3D video action recognition deep learning approach for near real time epileptic seizure classification
Authors: Karácsony Tamás , Loesch-Biffar Anna Mira , Vollmar Christian , Rémi Jan , Noachtar Soheyl , Cunha João Paulo Silva 
Published: November 2022

AbstractSeizure semiology is a well-established method to classify epileptic seizure types, but requires a significant amount of resources as long-term Video-EEG monitoring needs to be visually analyzed. Therefore, computer vision based diagnosis support tools are a promising approach. In this article, we utilize infrared (IR) and depth (3D) videos to show the feasibility of a 24/7 novel object and action recognition based deep learning (DL) monitoring system to differentiate between epileptic seizures in frontal lobe epilepsy (FLE), temporal lobe epilepsy (TLE) and non-epileptic events. Based on the largest 3Dvideo-EEG database in the world (115 seizures/+680,000 video-frames/427GB), we achieved a promising cross-subject validation f1-score of 0.833±0.061 for the 2 class (FLE vs. TLE) and 0.763 ± 0.083 for the 3 class (FLE vs. TLE vs. non-epileptic) case, from 2 s samples, with an automated semi-specialized depth (Acc.95.65%) and Mask R-CNN (Acc.96.52%) based cropping pipeline to pre-process the videos, enabling a near-real-time seizure type detection and classification tool. Our results demonstrate the feasibility of our novel DL approach to support 24/7 epilepsy monitoring, outperforming all previously published methods.
Lentinan improves intestinal inflammation and gut dysbiosis in antibiotics-induced mice
Authors: Ji Xiuyu , Su Le , Zhang Ping , Yue Qiulin , Zhao Chen , Sun Xin , Li Kunlun , Liu Xinli , Zhang Song , Zhao Lin 
Published: November 2022

AbstractGut microbiota dysbiosis is already a global problem after antibiotic overuse. This study was to investigate the therapeutic effect of lentinan and the mechanism of recovery of intestinal inflammation on broad-spectrum antibiotic-driven gut microbial dysbiosis in mice. Gut microbiota was elucidated by the Illumina MiSeq platform. Gas chromatography/mass spectrometry was used to investigate short-chain fatty acid content. Colon histology, expression of tight-junction associated proteins and pro-inflammatory cytokines levels were evaluated. The results showed that the gut microbiota of diversity and richness were reduced and various taxonomic levels of the gut microbiota were perturbed after antibiotics gavage. The abundance of Firmicutes and Bacteroidetes shifted to Proteobacteria and increased the relative abundance of harmful microbiota (Parabacteroides and Klebsiella) post-antibiotics, whereas lentinan administration reversed the dysbiosis and increased beneficial microbiota, including S24-7, Lactobacillus, Oscillospira, Ruminococcus and Allobaculum. The concentrations of propionic acid and butyric acid were significantly increased by treatment with lentinan. And lentinan improved colon tissue morphology and reduced pro-inflammatory cytokines via altering NF-κB signaling pathway in antibiotic-driven gut microbial dysbiosis mice. Taken together, the results proved that lentinan can be used as a prebiotic and the result provided a theoretical basis for improving the clinical treatment of broad-spectrum antibiotics side effects.
Independent effects of acute normobaric hypoxia and hypobaric hypoxia on human physiology
Authors: Rosales Alejandro M. , Shute Robert J. , Hailes Walter S. , Collins Christopher W. , Ruby Brent C. , Slivka Dustin R. 
Published: November 2022

AbstractThe purpose of this study was to examine the effects of acute normobaric (NH, decreased FiO2) and hypobaric (HH, 4200 m ascent) hypoxia exposures compared to sea level (normobaric normoxia, NN). Tissue oxygenation, cardiovascular, and body fluid variables measured during rest and a 3-min step-test following 90-min exposures (NH, HH, NN). Muscle oxygenated hemoglobin (O2Hb) decreased, and muscle deoxygenated hemoglobin (HHb) increased environmentally independent from rest to exercise (p < 0.001). During exercise, brain O2Hb was lower at HH compared to NN (p = 0.007), trending similarly with NH (p = 0.066), but no difference between NN and NH (p = 0.158). During exercise, HR at NH (141 ± 4 beats·min−1) and HH (141 ± 3 beats·min−1) were higher than NN (127 ± 44 beats·min−1, p = 0.002), but not each other (p = 0.208). During exercise, stroke volume at HH (109.6 ± 4.1 mL·beat−1) was higher than NH (97.8 ± 3.3 mL·beat−1) and NN (99.8 ± 3.9 mL·beat−1, p ≤ 0.010) with no difference between NH and NN (p = 0.481). During exercise, cardiac output at NH (13.8 ± 0.6 L) and HH (15.5 ± 0.7 L) were higher than NN (12.6 ± 0.5 L, p ≤ 0.006) with HH also higher than NH (p = 0.001). During acute hypoxic stimuli, skeletal muscle maintains oxygenation whereas the brain does not. These differences may be mediated by environmentally specific cardiovascular compensation. Thus, caution is advised when equating NH and HH.
The intrafollicular concentration of leptin as a potential biomarker to predict oocyte maturity in in-vitro fertilization
Authors: Hong Kun-Jing , Lin Jun-Jie , Lin Liang-Hua , Lai Tsung-Hsuan 
Published: November 2022

AbstractOocyte maturity is critical to the development potential of the embryo and pregnancy outcomes in natural and in-vitro fertilization (IVF). In IVF, oocyte maturity is typically evaluated using morphological criteria, although such assessment remains highly subjective. To identify reliable biomarkers of oocyte maturity, this study investigates the relationship between follicular cytokine concentrations and oocyte maturity in IVF patients with different ovarian reserves. In this prospective study, follicular fluid was collected during oocyte retrieval and the concentrations of cytokines involved in ovarian folliculogenesis were determined. Follicular fluid cytokine concentrations were compared between participants in three groups according to serum anti-Mullerian hormone (AMH) concentration, as follows: low AMH, < 2 ng/mL; normal AMH, 2–5 ng/mL; and high AMH, > 5 ng/mL. Pearson's correlation coefficient analysis showed that the number of mature oocytes correlated positively and strongly with serum AMH level (r = 0.719; p < 0.01). The leptin concentration in follicular fluid was significantly higher in women with normal AMH level than in those with low or high levels. ROC curve analysis showed that the follicular fluid levels of leptin (area under ROC curve, 0.829; 95% confidence interval, 0.659–0.998; p < 0.01) and SCF (area under ROC curve, 0.706; 95% confidence interval, 0.491–0.921; p = 0.087) were the best predictors of oocyte maturity. At an optimal cut-off value of 16 ng/mL, leptin had positive predictive value (sensitivity) up to 70% and negative predictive value (specificity) of 91% for indicating oocyte maturity. The concentration of leptin in follicular fluid is closely related to ovarian reserve and may serve as a biomarker to predict oocyte maturity.
Novel methods for wind speeds prediction across multiple locations
Authors: Gaidai Oleg , Xu Jingxiang , Yan Ping , Xing Yihan , Wu Yu , Zhang Fuxi 
Published: November 2022

AbstractThis article provides two unique methodologies that may be coupled to study the dependability of multidimensional nonlinear dynamic systems. First, the structural reliability approach is well suited for multidimensional environmental and structural reactions and is either measured or numerically simulated over sufficient time, yielding lengthy ergodic time series. Second, a unique approach to predicting extreme values has technical and environmental implications. In the event of measurable environmental loads, it is also feasible to calculate the probability of system failure, as shown in this research. In addition, traditional probability approaches for time series cannot cope effectively with the system's high dimensionality and cross-correlation across dimensions. It is common knowledge that wind speeds represent a complex, nonlinear, multidimensional, and cross-correlated dynamic environmental system that is always difficult to analyze. Additionally, global warming is a significant element influencing ocean waves throughout time. This section aims to demonstrate the efficacy of the previously mentioned technique by applying a novel method to the Norwegian offshore data set for the greatest daily wind cast speeds in the vicinity of the Landvik wind station. This study aims to evaluate the state-of-the-art approach for extracting essential information about the extreme reaction from observed time histories. The approach provided in this research enables the simple and efficient prediction of failure probability for the whole nonlinear multidimensional dynamic system.
Elucidating the genetic architecture of DNA methylation to identify promising molecular mechanisms of disease
Authors: Ma Jiantao , Joehanes Roby , Liu Chunyu , Keshawarz Amena , Hwang Shih-Jen , Bui Helena , Tejada Brandon , Sooda Meera , Munson Peter J. , Demirkale Cumhur Y. , Courchesne Paul , Heard-Costa Nancy L. , Pitsillides Achilleas N. , Feolo Mike , Sharopova Nataliya , Vasan Ramachandran S. , Huan Tianxiao , Levy Daniel 
Published: November 2022

AbstractDNA methylation commonly occurs at cytosine-phosphate-guanine sites (CpGs) that can serve as biomarkers for many diseases. We analyzed whole genome sequencing data to identify DNA methylation quantitative trait loci (mQTLs) in 4126 Framingham Heart Study participants. Our mQTL mapping identified 94,362,817 cis-mQTLvariant-CpG pairs (for 210,156 unique autosomal CpGs) at P < 1e−7 and 33,572,145 trans-mQTL variant-CpG pairs (for 213,606 unique autosomal CpGs) at P < 1e−14. Using cis-mQTL variants for 1258 CpGs associated with seven cardiovascular disease (CVD) risk factors, we found 104 unique CpGs that colocalized with at least one CVD trait. For example, cg11554650 (PPP1R18) colocalized with type 2 diabetes, and was driven by a single nucleotide polymorphism (rs2516396). We performed Mendelian randomization (MR) analysis and demonstrated 58 putatively causal relations of CVD risk factor-associated CpGs to one or more risk factors (e.g., cg05337441 [APOB] with LDL; MR P = 1.2e−99, and 17 causal associations with coronary artery disease (e.g. cg08129017 [SREBF1] with coronary artery disease; MR P = 5e−13). We also showed that three CpGs, e.g., cg14893161 (PM20D1), are putatively causally associated with COVID-19 severity. To assist in future analyses of the role of DNA methylation in disease pathogenesis, we have posted a comprehensive summary data set in the National Heart, Lung, and Blood Institute’s BioData Catalyst.
Estimation of electrical transformer parameters with reference to saturation behavior using artificial hummingbird optimizer
Authors: Kotb Mohamed F. , El-Fergany Attia A. , Gouda Eid A. 
Published: November 2022

AbstractThis paper offers an efficient tool to define the unknown parameters of electrical transformers. The proposed methodology is developed based on artificial hummingbird optimizer (AHO) to generate the best values of the transformer’s unknown parameters. At initial stage, the parameters’ extraction of the transformer electrical equivalent is adapted as an optimization function along with the associated operating inequality constraints. In which, the sum of absolute errors (SAEs) among many variables from nameplate data of transformers is decided to be minimized. Two test cases of 4 kVA and 15 kVA transformers ratings are demonstrated to indicate the ability of the AHO compared to other recent challenging optimizers. The proposed AHO achieves the lowest SAE’s value than other competing algorithms. At advanced stage of this effort, the capture of percentage of loading to achieve maximum efficiency is ascertained. At later stage, the performance of transformers utilizing the extracted parameters cropped by the AHO to investigate the principal behavior at energization of these transformer units is made. At the end, it can be confirmed that the AHO produces best values of transformer parameters which help much in achieving accurate simulations for steady-state and inrush behaviors.
Facial asymmetry in dogs with fear and aggressive behaviors towards humans
Authors: Siniscalchi Marcello , d’Ingeo Serenella , Minunno Michele , Quaranta Angelo 
Published: November 2022

AbstractThere is now scientific evidence that, in dogs, distinctive facial actions are produced in response to different emotionally-arousing stimuli suggesting a relationship between lateralized facial expressions and emotional states. Although in humans, relationships between facial asymmetry and both emotional and physiological distress have been reported, there are currently no data on the laterality of dogs’ facial expressions in response to social stimuli with respect to canine behavioral disorders. The aim of the present work was to investigate the facial asymmetries of dogs with fear and aggressive behavior towards humans during two different emotional situations: (1) while the dogs were alone in the presence of their owners and (2) during the approach of an unfamiliar human being. Overall, our results demonstrated high levels of asymmetries in facial expressions of dogs displaying fear and aggressive behaviors towards humans indicating that measuring facial asymmetries in dogs could prove to be a useful non-invasive tool for investigating physiology-based behavioral disorders.
Chaotic systems with variable indexs for image encryption application
Authors: Yan Minxiu , Jie Jingfeng , Zhang Ping 
Published: November 2022

AbstractA new chaotic system is obtained by changing the number of unknown parameters. The dynamical behavior of the chaotic system is investigated by the exponential change of the single unknown parameter and the state variable in the nonlinear term of the system. The structure of the newly constructed chaotic system is explored. When the number of the same state variables in the nonlinear term of the chaotic system varies, the system’s dynamic behavior undergoes complex changes. Moreover, with the exponential change of a single-state variable in a three-dimensional system, the system maintains the chaotic attractor while the state of the attractor changes. On this basis, the Lyapunov exponent, bifurcation diagram, complexity, and 0–1 test are used to compare and analyze this phenomenon. Through circuit simulations, the chaotic characteristics of the system under different conditions are further verified; this provides a theoretical basis for the hardware implementation of the new system. Finally, the new chaotic system is applied to an image encryption system with the same encryption and decryption processes. The comparison shows improved encryption and decryption characteristics of image encryption systems.
Characterization of alternative mRNA splicing in cultured cell populations representing progressive stages of human fetal kidney development
Authors: Wineberg Yishay , Kanter Itamar , Ben-Haim Nissim , Pode-Shakked Naomi , Bucris Efrat , Bar-Lev Tali Hana , Oriel Sarit , Reinus Harel , Yehuda Yishai , Gershon Rotem , Shukrun Rachel , Bar-Lev Dekel Dov , Urbach Achia , Dekel Benjamin , Kalisky Tomer 
Published: November 2022

AbstractNephrons are the functional units of the kidney. During kidney development, cells from the cap mesenchyme—a transient kidney-specific progenitor state—undergo a mesenchymal to epithelial transition (MET) and subsequently differentiate into the various epithelial cell types that create the tubular structures of the nephron. Faults in this transition can lead to a pediatric malignancy of the kidney called Wilms’ tumor that mimics normal kidney development. While human kidney development has been characterized at the gene expression level, a comprehensive characterization of alternative splicing is lacking. Therefore, in this study, we performed RNA sequencing on cell populations representing early, intermediate, and late developmental stages of the human fetal kidney, as well as three blastemal-predominant Wilms’ tumor patient-derived xenografts. Using this newly generated RNAseq data, we identified a set of transcripts that are alternatively spliced between the different developmental stages. Moreover, we found that cells from the earliest developmental stage have a mesenchymal splice-isoform profile that is similar to that of blastemal-predominant Wilms’ tumor xenografts. RNA binding motif enrichment analysis suggests that the mRNA binding proteins ESRP1, ESRP2, RBFOX2, and QKI regulate alternative mRNA splicing during human kidney development. These findings illuminate new molecular mechanisms involved in human kidney development and pediatric kidney cancer.
Ursodeoxycholic acid use in lactating female patients is associated with clinically negligible concentrations of this bile acid in breast milk
Authors: Šimják Patrik , Petr Tomáš , Kaslová Barbora , Fejfar Tomáš , Hůlek Petr , Pařízek Antonín , Vítek Libor 
Published: November 2022

AbstractIn the literature on the safety of ursodeoxycholic acid (UDCA) during breastfeeding, insufficient data has been reported to date. Thus, the aim of our study was to analyze bile acid (BA) concentrations in breast milk in a cohort of patients, treated with UDCA, and with various cholestatic liver diseases. The study was carried out on a cohort of 20 patients with various cholestatic diseases. All the patients were treated with UDCA (500–1500 mg daily). Concentrations of BA, sampled on day 3 after delivery were analyzed using the GS-MS technique, and then compared to untreated women. Total BA concentrations in the breast milk of the UDCA-treated patients were equal to those of the untreated women controls (3.2 ± 1 vs. 3.2 ± 0.2 µmol/L, respectively). The UDCA concentrations in breast milk remained negligible in UDCA-treated patients (0.69 µmol/L), and in any event did not contribute to the newborn BA pool. No apparent side-effects of the maternal UDCA treatment were observed in any newborn infant, and no deterioration in postnatal development was observed during the routine 1-year follow-ups. Therapeutic administration of UDCA during lactation is safe for breastfed babies since UDCA only gets into breast milk in negligible amounts. UDCA treatment should be allowed and included into the guidelines for the therapy of cholestatic diseases in breastfeeding mothers.
Effect of sodium-glucose cotransporter-2 inhibitors on aldosterone and renin levels in diabetes mellitus type 2 patients: a systematic review and meta-analysis
Authors: Manosroi Worapaka , Danpanichkul Pojsakorn , Atthakomol Pichitchai 
Published: November 2022

AbstractThe effect of sodium-glucose cotransporter-2 inhibitors (SGLT2i) on plasma aldosterone concentration (PAC) and plasma renin activity (PRA) levels are still inconclusive. This meta-analysis aimed to demonstrate the changes in PAC and PRA levels after the use of SGLT2i in type 2 diabetes patients. A search for relevant publications was performed using PubMed/Medline, Scopus, Cochrane, and Embase databases from their inception through May 2022. Inclusion criteria were studies that contained data on crude PAC and PRA levels before and after the use of SGLT2i in adult type 2 diabetes patients. Standardized mean difference (SMD) with a 95% confidence interval (95% CI) was calculated. Data was separately analyzed by study design: randomized controlled study (RCT) and non-randomized controlled study (non-RCT). Ten studies involving 380 patients were included with two RCT and eight non-RCT. Serum PAC levels showed no significant change after the use of SGLT2i in both RCT and non-RCT. Significantly higher PRA levels were observed after the use of SGLT2i in both RCT and non-RCT with SMD of 0.40 ng/mL/hr; 95% CI (0.06, 0.74) and SMD of 0.36 ng/mL/hr; 95%CI (0.17, 0.55), respectively. Subgroup analysis found significantly higher PRA levels after the use of SGLT2i (SMD 0.45 ng/mL/hr; 95% CI (0.18, 0.71)) only in subgroups that used for three months or less. The use of SGLT2i in diabetes mellitus type 2 patients can affect PRA levels, especially during short-term use. PRA levels should be interpreted with caution in this population.
Clinical prospects of WRN inhibition as a treatment for MSI tumours
Authors: Morales-Juarez David A. , Jackson Stephen P. 
Published: November 2022

AbstractThe discovery of synthetic lethal interactions with genetic deficiencies in cancers has highlighted several candidate targets for drug development, with variable clinical success. Recent work has unveiled a promising synthetic lethal interaction between inactivation/inhibition of the WRN DNA helicase and tumours with microsatellite instability, a phenotype that arises from DNA mismatch repair deficiency. While these and further studies have highlighted the therapeutic potential of WRN inhibitors, compounds with properties suitable for clinical exploitation remain to be described. Furthermore, the complexities of MSI development and its relationship to cancer evolution pose challenges for clinical prospects. Here, we discuss possible paths of MSI tumour development, the viability of WRN inhibition as a strategy in different scenarios, and the necessary conditions to create a roadmap towards successful implementation of WRN inhibitors in the clinic.
Electrochemically exfoliated phosphorene nanosheet thin films for wafer-scale near-infrared phototransistor array
Authors: Jeon Youngseo , Rhee Dongjoon , Wu Bing , Mazanek Vlastimil , Kim In Soo , Son Donghee , Sofer Zdeněk , Kang Joohoon 
Published: November 2022

AbstractTwo-dimensional (2D) black phosphorus (BP), or phosphorene, has recently emerged as a promising 2D semiconductor because of its p-type charge transport behavior and near-infrared photoresponsivity. However, the application of BP in practical electronic and optoelectronic devices is hindered by challenges in producing high-quality BP films over large areas. In this manuscript, we present a facile solution-based process to create wafer-scale BP films for fabrication of p-channel field-effect transistors that are responsive to near infrared light. Few-layer BP nanosheets are first exfoliated from the bulk crystal via electrochemical intercalation of cationic molecules and then vacuum-filtered through an anodic aluminum oxide membrane. The resulting BP film can be transferred onto an SiO2-coated silicon substrate, thereby allowing for realization of field-effect transistors after electrode deposition and thermal annealing. The transistor array exhibits spatial uniformity in electrical performance with an average hole mobility of ~0.002 cm2 V−1 s−1 and on/off ratio of 130. Furthermore, gate-induced modulation of the BP channel allows for enhancement in the photoresponsivity for 1550-nm light illumination up to 24 mA W−1, which benefits the application of the phototransistor array for near infrared imaging.