bluuebunny/crossref_metadata_2025_split huggingface dataset:
Topological triple phase transition in non-Hermitian Floquet quasicrystals
Authors: Weidemann Sebastian , Kremer Mark , Longhi Stefano , Szameit Alexander 
Published: January 2022

AbstractPhase transitions connect different states of matter and are often concomitant with the spontaneous breaking of symmetries. An important category of phase transitions is mobility transitions, among which is the well known Anderson localization1, where increasing the randomness induces a metal–insulator transition. The introduction of topology in condensed-matter physics2–4 lead to the discovery of topological phase transitions and materials as topological insulators5. Phase transitions in the symmetry of non-Hermitian systems describe the transition to on-average conserved energy6 and new topological phases7–9. Bulk conductivity, topology and non-Hermitian symmetry breaking seemingly emerge from different physics and, thus, may appear as separable phenomena. However, in non-Hermitian quasicrystals, such transitions can be mutually interlinked by forming a triple phase transition10. Here we report the experimental observation of a triple phase transition, where changing a single parameter simultaneously gives rise to a localization (metal–insulator), a topological and parity–time symmetry-breaking (energy) phase transition. The physics is manifested in a temporally driven (Floquet) dissipative quasicrystal. We implement our ideas via photonic quantum walks in coupled optical fibre loops11. Our study highlights the intertwinement of topology, symmetry breaking and mobility phase transitions in non-Hermitian quasicrystalline synthetic matter. Our results may be applied in phase-change devices, in which the bulk and edge transport and the energy or particle exchange with the environment can be predicted and controlled.
Novel flight style and light wings boost flight performance of tiny beetles
Authors: Farisenkov Sergey E. , Kolomenskiy Dmitry , Petrov Pyotr N. , Engels Thomas , Lapina Nadezhda A. , Lehmann Fritz-Olaf , Onishi Ryo , Liu Hao , Polilov Alexey A. 
Published: January 2022

AbstractFlight speed is positively correlated with body size in animals1. However, miniature featherwing beetles can fly at speeds and accelerations of insects three times their size2. Here we show that this performance results from a reduced wing mass and a previously unknown type of wing-motion cycle. Our experiment combines three-dimensional reconstructions of morphology and kinematics in one of the smallest insects, the beetle Paratuposa placentis (body length 395 μm). The flapping bristled wings follow a pronounced figure-of-eight loop that consists of subperpendicular up and down strokes followed by claps at stroke reversals above and below the body. The elytra act as inertial brakes that prevent excessive body oscillation. Computational analyses suggest functional decomposition of the wingbeat cycle into two power half strokes, which produce a large upward force, and two down-dragging recovery half strokes. In contrast to heavier membranous wings, the motion of bristled wings of the same size requires little inertial power. Muscle mechanical power requirements thus remain positive throughout the wingbeat cycle, making elastic energy storage obsolete. These adaptations help to explain how extremely small insects have preserved good aerial performance during miniaturization, one of the factors of their evolutionary success.
The cGAS–STING pathway drives type I IFN immunopathology in COVID-19
Authors: Domizio Jeremy Di , Gulen Muhammet F. , Saidoune Fanny , Thacker Vivek V. , Yatim Ahmad , Sharma Kunal , Nass Théo , Guenova Emmanuella , Schaller Martin , Conrad Curdin , Goepfert Christine , de Leval Laurence , Garnier Christophe von , Berezowska Sabina , Dubois Anaëlle , Gilliet Michel , Ablasser Andrea 
Published: January 2022

AbstractCOVID-19, which is caused by infection with SARS-CoV-2, is characterized by lung pathology and extrapulmonary complications1,2. Type I interferons (IFNs) have an essential role in the pathogenesis of COVID-19 (refs 3–5). Although rapid induction of type I IFNs limits virus propagation, a sustained increase in the levels of type I IFNs in the late phase of the infection is associated with aberrant inflammation and poor clinical outcome5–17. Here we show that the cyclic GMP-AMP synthase (cGAS)–stimulator of interferon genes (STING) pathway, which controls immunity to cytosolic DNA, is a critical driver of aberrant type I IFN responses in COVID-19 (ref. 18). Profiling COVID-19 skin manifestations, we uncover a STING-dependent type I IFN signature that is primarily mediated by macrophages adjacent to areas of endothelial cell damage. Moreover, cGAS–STING activity was detected in lung samples from patients with COVID-19 with prominent tissue destruction, and was associated with type I IFN responses. A lung-on-chip model revealed that, in addition to macrophages, infection with SARS-CoV-2 activates cGAS–STING signalling in endothelial cells through mitochondrial DNA release, which leads to cell death and type I IFN production. In mice, pharmacological inhibition of STING reduces severe lung inflammation induced by SARS-CoV-2 and improves disease outcome. Collectively, our study establishes a mechanistic basis of pathological type I IFN responses in COVID-19 and reveals a principle for the development of host-directed therapeutics.
Race and ethnic minority, local pollution, and COVID-19 deaths in Texas
Authors: Xu Annie , Loch-Temzelides Ted , Adiole Chima , Botton Nathan , Dee Sylvia G. , Masiello Caroline A. , Osborn Mitchell , Torres Mark A. , Cohan Daniel S. 
Published: January 2022

AbstractThe costs of COVID-19 are extensive, and, like the fallout of most health and environmental crises in the US, there is growing evidence that these costs weigh disproportionately on communities of color. We investigated whether county-level racial composition and fine particulate pollution (PM2.5) are indicators for COVID-19 incidence and death rates in the state of Texas. Using county-level data, we ran linear regressions of percent minority as well as historic 2000–2016 PM2.5 levels against COVID-19 cases and deaths per capita. We found that a county's percent minority racial composition, defined as the percentage of population that identifies as Black or Hispanic, highly correlates with COVID-19 case and death rates. Using Value-of-Statistical-Life calculations, we found that economic costs from COVID-19 deaths fall more heavily on Black and Hispanic residents in Harris County, the most populous county in Texas. We found no consistent evidence or significant correlations between historic county-average PM2.5 concentration and COVID-19 incidence or death. Our findings suggest that public health and economic aid policy should consider the racially-segregated burden of disease to better mitigate costs and support equity for the duration and aftermath of health crises.
Insect visual sensitivity to long wavelengths enhances colour contrast of insects against vegetation
Authors: Wang Lu-Yi , Stuart-Fox Devi , Walker Geoff , Roberts Nicholas W. , Franklin Amanda M. 
Published: January 2022

AbstractThe sensitivity of animal photoreceptors to different wavelengths of light strongly influence the perceived visual contrast of objects in the environment. Outside of the human visual wavelength range, ultraviolet sensitivity in many species provides important and behaviourally relevant visual contrast between objects. However, at the opposite end of the spectrum, the potential advantage of red sensitivity remains unclear. We investigated the potential benefit of long wavelength sensitivity by modelling the visual contrast of a wide range of jewel beetle colours against flowers and leaves of their host plants to hypothetical insect visual systems. We find that the presence of a long wavelength sensitive photoreceptor increases estimated colour contrast, particularly of beetles against leaves. Moreover, under our model parameters, a trichromatic visual system with ultraviolet (λmax = 355 nm), short (λmax = 445 nm) and long (λmax = 600 nm) wavelength photoreceptors performed as well as a tetrachromatic visual system, which had an additional medium wavelength photoreceptor (λmax = 530 nm). When we varied λmaxfor the long wavelength sensitive receptor in a tetrachromatic system, contrast values between beetles, flowers and leaves were all enhanced with increasing λmaxfrom 580 nm to at least 640 nm. These results suggest a potential advantage of red sensitivity in visual discrimination of insect colours against vegetation and highlight the potential adaptive value of long wavelength sensitivity in insects.
A transcytotic transport mechanism across the tympanic membrane
Authors: Kurabi Arwa , Pak Kwang , Chavez Eduardo , Doan Jennifer , Ryan Allen F. 
Published: January 2022

AbstractDrug treatments for middle ear diseases are currently delivered systemically, or locally after opening the impermeable tympanic membrane (TM). We previously used bacteriophage display to discover novel peptides that are actively transported across the intact TM, with a variety of transport rates. Peptide structures were analyzed for evidence regarding the mechanism for this unexpected transport, which was then tested by the application of chemical inhibitors. Primary sequences indicated that trans-TM peptides share one of two amino acid motifs. Secondary structures revealed that linear configurations associate with higher transport rates than coiled structures. Tertiary analysis indicated that the shared sequence motifs are prominently displayed at the free ends of rapidly transported peptide phage. The shared motifs were evaluated for similarity to known motifs. The highest probability matches were for protein motifs involved in transmembrane transport and exosomes. Overall, structural findings suggest that the shared motifs represent binding sequences. They also implicate transcytosis, a polarized cell transport mechanism consisting of endocytosis, transcellular transport, and exocytosis. Inhibitor studies indicated that macropinocytosis, retrograde transport through Golgi and exocytosis participate in transport across the TM, consistent with transcytosis. This process can be harnessed to noninvasively deliver therapeutics to the middle ear.
A new detection model of microaneurysms based on improved FC-DenseNet
Authors: Wang Zhenhua , Li Xiaokai , Yao Mudi , Li Jing , Jiang Qing , Yan Biao 
Published: January 2022

AbstractDiabetic retinopathy (DR) is a frequent vascular complication of diabetes mellitus and remains a leading cause of vision loss worldwide. Microaneurysm (MA) is usually the first symptom of DR that leads to blood leakage in the retina. Periodic detection of MAs will facilitate early detection of DR and reduction of vision injury. In this study, we proposed a novel model for the detection of MAs in fluorescein fundus angiography (FFA) images based on the improved FC-DenseNet, MAs-FC-DenseNet. FFA images were pre-processed by the Histogram Stretching and Gaussian Filtering algorithm to improve the quality of FFA images. Then, MA regions were detected by the improved FC-DenseNet. MAs-FC-DenseNet was compared against other FC-DenseNet models (FC-DenseNet56 and FC-DenseNet67) or the end-to-end models (DeeplabV3+ and PSPNet) to evaluate the detection performance of MAs. The result suggested that MAs-FC-DenseNet had higher values of evaluation metrics than other models, including pixel accuracy (PA), mean pixel accuracy (MPA), precision (Pre), recall (Re), F1-score (F1), and mean intersection over union (MIoU). Moreover, MA detection performance for MAs-FC-DenseNet was very close to the ground truth. Taken together, MAs-FC-DenseNet is a reliable model for rapid and accurate detection of MAs, which would be used for mass screening of DR patients.
New insights into the role of chrysanthemum calcineurin B–like interacting protein kinase CmCIPK23 in nitrate signaling in Arabidopsis roots
Authors: Liu Bowen , Fan Hongmei , Sun Cuihui , Yuan Mingyue , Geng Xi , Ding Xiao , Ma Rui , Yan Na , Sun Xia , Zheng Chengshu 
Published: January 2022

AbstractNitrate is an important source of nitrogen and also acts as a signaling molecule to trigger numerous physiological, growth, and developmental processes throughout the life of the plant. Many nitrate transporters, transcription factors, and protein kinases participate in the regulation of nitrate signaling. Here, we identified a gene encoding the chrysanthemum calcineurin B-like interacting protein kinase CmCIPK23, which participates in nitrate signaling pathways. In Arabidopsis, overexpression of CmCIPK23 significantly decreased lateral root number and length and primary root length compared to the WT when grown on modified Murashige and Skoog medium with KNO3 as the sole nitrogen source (modified MS). The expression of nitrate-responsive genes differed significantly between CmCIPK23-overexpressing Arabidopsis (CmCIPK23-OE) and the WT after nitrate treatment. Nitrate content was significantly lower in CmCIPK23-OE roots, which may have resulted from reduced nitrate uptake at high external nitrate concentrations (≥ 1 mM). Nitrate reductase activity and the expression of nitrate reductase and glutamine synthase genes were lower in CmCIPK23-OE roots. We also found that CmCIPK23 interacted with the transcription factor CmTGA1, whose Arabidopsis homolog regulates the nitrate response. We inferred that CmCIPK23 overexpression influences root development on modified MS medium, as well as root nitrate uptake and assimilation at high external nitrate supply. These findings offer new perspectives on the mechanisms by which the chrysanthemum CBL interacting protein kinase CmCIPK23 influences nitrate signaling.
Genetic and correlative light and electron microscopy evidence for the unique differentiation pathway of erythrophores in brown trout skin
Authors: Sušnik Bajec Simona , Djurdjevič Ida , Linares Andújar Carmen , Kreft Mateja Erdani 
Published: January 2022

AbstractBased on their cell ultrastructure, two types of erythrophores in the spotted skin regions of brown trout (Salmo trutta) were previously described. To test the hypothesis regarding the origin of a new cell type following genome duplication, we analysed the gene and paralogue gene expression patterns of erythrophores in brown trout skin. In addition, the ultrastructure of both erythrophore types was precisely examined using transmission electron microscopy (TEM) and correlative light microscopy and electron microscopy (CLEM). Ultrastructural differences between the sizes of erythrophore inclusions were confirmed; however, the overlapping inclusion sizes blur the distinction between erythrophore types, which we have instead defined as cell subtypes. Nevertheless, the red spots of brown trout skin with subtype 2 erythrophores, exhibited unique gene expression patterns. Many of the upregulated genes are involved in melanogenesis or xanthophore differentiation. In addition, sox10, related to progenitor cells, was also upregulated in the red spots. The expressions of paralogues derived from two genome duplication events were also analysed. Multiple paralogues were overexpressed in the red spots compared with other skin regions, suggesting that the duplicated gene copies adopted new functions and contributed to the origin of a new cell subtype that is characteristic for red spot. Possible mechanisms regarding erythrophore origin are proposed and discussed. To the best of our knowledge, this is the first study to evaluate pigment cell types in the black and red spots of brown trout skin using the advanced CLEM approach together with gene expression profiling.
Development of polyester filters with polymer nanocomposite active layer for effective dye filtration
Authors: Pasichnyk Mariia , Gaálová Jana , Minarik Peter , Václavíková Miroslava , Melnyk Inna 
Published: January 2022

AbstractOrganic dyes such as methyl orange (MO) and methylene blue (MB) are widely used in different industries and have become one of the leading emerging water contaminants. The purpose of the current research is to develop new polymer nanocomposite filters for the effective elimination of the dyes, which are non-biodegradable and not efficiently removed by traditional treatment methods. New padded and covered filters were produced applying polystyrene-acrylic/ZnO nanocomposite on the polyester surface by blade coating and one-bath pad methods. Principal results determined by SEM analysis confirm that functionalised layer can create unprecedented function of filter textile material depending on the way of treatment. Due to the modification, the surface area increased from 5.9 for untreated polyester to 85.2 (padded), 44.6 (covered) m2/g. The measured pore size of produced filters is around 3.4 nm, which corresponds to the mesoporous structure. Our study reported effective filters with the rate of MB and MO removal efficiencies up to 60%. Moreover, a colourless reduced form of MB—leuco-methylene blue (LMB) could be created. The functionalised layer of the developed filters through hydrogen bonding between the –OH groups of styrene-acrylic molecules and the –N(CH3)2 groups on LMB can stabilise LMB.
Wnt/β-catenin signaling promotes neurogenesis in the diencephalospinal dopaminergic system of embryonic zebrafish
Authors: Westphal Markus , Panza Paolo , Kastenhuber Edda , Wehrle Johanna , Driever Wolfgang 
Published: January 2022

AbstractWnt/β-catenin signaling contributes to patterning, proliferation, and differentiation throughout vertebrate neural development. Wnt/β-catenin signaling is important for mammalian midbrain dopaminergic neurogenesis, while little is known about its role in ventral forebrain dopaminergic development. Here, we focus on the A11-like, Otp-dependent diencephalospinal dopaminergic system in zebrafish. We show that Wnt ligands, receptors and extracellular antagonist genes are expressed in the vicinity of developing Otp-dependent dopaminergic neurons. Using transgenic Wnt/β-catenin-reporters, we found that Wnt/β-catenin signaling activity is absent from these dopaminergic neurons, but detected Wnt/β-catenin activity in cells adjacent to the caudal DC5/6 clusters of Otp-dependent dopaminergic neurons. Pharmacological manipulations of Wnt/β-catenin signaling activity, as well as heat-shock driven overexpression of Wnt agonists and antagonists, interfere with the development of DC5/6 dopaminergic neurons, such that Wnt/β-catenin activity positively correlates with their number. Wnt/β-catenin activity promoted dopaminergic development specifically at stages when DC5/6 dopaminergic progenitors are in a proliferative state. Our data suggest that Wnt/β-catenin signaling acts in a spatially and temporally restricted manner on proliferative dopaminergic progenitors in the hypothalamus to positively regulate the size of the dopaminergic neuron groups DC5 and DC6.
Query-based-learning mortality-related decoders for the developed island economy
Authors: Yeh Chien-Hung , Wang Yining , Yeh Fu-Chun 
Published: January 2022

AbstractSearch volumes from Google Trends over clear-defined temporal and spatial scales were reported beneficial in predicting influenza or disease outbreak. Recent studies showed Wiener Model shares merits of interpretability, implementation, and adaptation to nonlinear fluctuation in terms of real-time decoding. Previous work reported Google Trends effectively predicts death-related trends for the continent economy, yet whether it applies to the island economy is unclear. To this end, a framework of the mortality-related model for a developed island economy Taiwan was built based on potential death causes from Google Trends, aiming to provide new insights into death-related online search behavior at a population level. Our results showed estimated trends based on the Wiener model significantly correlated to actual trends, outperformed those with multiple linear regression and seasonal autoregressive integrated moving average. Meanwhile, apart from that involved all possible features, two other sets of feature selecting strategies were proposed to optimize pre-trained models, either by weights or waveform periodicity of features, resulting in estimated death-related dynamics along with spectrums of risk factors. In general, high-weight features were beneficial to both “die” and “death”, whereas features that possessed clear periodic patterns contributed more to “death”. Of note, normalization before modeling improved decoding performances.
Storage conditions determine the characteristics of red blood cell derived extracellular vesicles
Authors: Bebesi Tímea , Kitka Diána , Gaál Anikó , Szigyártó Imola Csilla , Deák Róbert , Beke-Somfai Tamás , Koprivanacz Kitti , Juhász Tünde , Bóta Attila , Varga Zoltán , Mihály Judith 
Published: January 2022

AbstractExtracellular vesicles (EVs) are released during the storage of red blood cell (RBC) concentrates and might play adverse or beneficial roles throughout the utilization of blood products (transfusion). Knowledge of EV release associated factors and mechanism amends blood product management. In the present work the impact of storage time and medium (blood preserving additive vs isotonic phosphate buffer) on the composition, size, and concentration of EVs was studied using attenuated total reflection infrared (ATR-IR) spectroscopy, microfluidic resistive pulse sensing (MRPS) and freeze-fraction combined transmission electron micrography (FF-TEM). The spectroscopic protein-to-lipid ratio based on amide and the C–H stretching band intensity ratio indicated the formation of various vesicle subpopulations depending on storage conditions. After short storage, nanoparticles with high relative protein content were detected. Spectral analysis also suggested differences in lipid and protein composition, too. The fingerprint region (from 1300 to 1000 cm−1) of the IR spectra furnishes additional information about the biomolecular composition of RBC-derived EVs (REVs) such as adenosine triphosphate (ATP), lactose, glucose, and oxidized hemoglobin. The difference between the vesicle subpopulations reveals the complexity of the REV formation mechanism. IR spectroscopy, as a quick, cost-effective, and label-free technique provides valuable novel biochemical insight and might be used complementary to traditional omics approaches on EVs.
Differential remodelling of mitochondrial subpopulations and mitochondrial dysfunction are a feature of early stage diabetes
Authors: Rajab Bodour S. , Kassab Sarah , Stonall Connor D. , Daghistani Hussam , Gibbons Stephen , Mamas Mamas , Smith David , Mironov Aleksandr , AlBalawi Zainab , Zhang Yin Hua , Baudoin Florence , Zi Min , Prehar Sukhpal , Cartwright Elizabeth J. , Kitmitto Ashraf 
Published: January 2022

AbstractMitochondrial dysfunction is a feature of type I and type II diabetes, but there is a lack of consistency between reports and links to disease development. We aimed to investigate if mitochondrial structure–function remodelling occurs in the early stages of diabetes by employing a mouse model (GENA348) of Maturity Onset Diabetes in the Young, exhibiting hyperglycemia, but not hyperinsulinemia, with mild left ventricular dysfunction. Employing 3-D electron microscopy (SBF-SEM) we determined that compared to wild-type, WT, the GENA348 subsarcolemma mitochondria (SSM) are ~ 2-fold larger, consistent with up-regulation of fusion proteins Mfn1, Mfn2 and Opa1. Further, in comparison, GENA348 mitochondria are more irregular in shape, have more tubular projections with SSM projections being longer and wider. Mitochondrial density is also increased in the GENA348 myocardium consistent with up-regulation of PGC1-α and stalled mitophagy (down-regulation of PINK1, Parkin and Miro1). GENA348 mitochondria have more irregular cristae arrangements but cristae dimensions and density are similar to WT. GENA348 Complex activity (I, II, IV, V) activity is decreased but the OCR is increased, potentially linked to a shift towards fatty acid oxidation due to impaired glycolysis. These novel data reveal that dysregulated mitochondrial morphology, dynamics and function develop in the early stages of diabetes.