bluuebunny/crossref_metadata_2025_split huggingface dataset:
Rapid measurement of thoracolumbar kyphosis with the integrated inclinometer of a smartphone: a validity and reliability study
Authors: Huang Tianji , Zhao Zenghui , Wang Lin , Zhang Chao , Zhao Runhan , Xiong Chuang , Zhong Weiyang , Luo Xiaoji 
Published: May 2022

AbstractThe objective of this study was to evaluate the accuracy, reliability, and time requirements of two methods for measuring thoracolumbar kyphosis: a conventional method using a picture archiving and communication system (PACS) and this new method using the integrated inclinometer of a smartphone. The thoracolumbar kyphotic angles of one hundred consecutive patients were measured by a PACS and this novel smartphone method. The measured angles were analysed by multiple statistical methods, and the two measurement tools were compared in terms of accuracy, reliability, and time requirements. The mean result of thoracolumbar kyphosis measured by the PACS was 21.43 ± 12.96°, and the mean value measured by the smartphone was 21.03 ± 13.01°. A Bland–Altman plot for these two methods showed a mean difference of 0.4°, with the limits of agreement being -2.4° and 3.2°. One-way ANOVA showed no significant difference (F = 0.080, P = 0.999) among measurements by different observers and different methods. The intraclass correlation coefficients (ICCs) of the mean values of four repeated measurements of thoracolumbar kyphosis between these two methods were 0.997 (0.995–0.998), revealing that the two methods were highly correlated. The ICC results showed that the concordance between these two methods was very good for all measurements of thoracolumbar kyphosis, and the inter- and intra-observer reliability of the novel smartphone method were very good. The PACS method (36.95 ± 0.98 s) took significantly longer than the smartphone method (17.68 ± 0.97 s) when compared by an independent-samples t test (P = 0.000). This new method using the integrated inclinometer of a smartphone has satisfactory validity and reliability compared to the PACS method. Additionally, the new method took significantly less time than the PACS method. Measuring with a smartphone is more convenient than using a PACS, which is always rooted in a full-sized computer. In summary, this new method using the integrated inclinometer of a smartphone is rapid, convenient, accurate and reliable when measuring thoracolumbar kyphosis in osteoporotic vertebral compression fracture (OVCF) patients.
Clinical measures, radiomics, and genomics offer synergistic value in AI-based prediction of overall survival in patients with glioblastoma
Authors: Fathi Kazerooni Anahita , Saxena Sanjay , Toorens Erik , Tu Danni , Bashyam Vishnu , Akbari Hamed , Mamourian Elizabeth , Sako Chiharu , Koumenis Costas , Verginadis Ioannis , Verma Ragini , Shinohara Russell T. , Desai Arati S. , Lustig Robert A. , Brem Steven , Mohan Suyash , Bagley Stephen J. , Ganguly Tapan , O’Rourke Donald M. , Bakas Spyridon , Nasrallah MacLean P. , Davatzikos Christos 
Published: May 2022

AbstractMulti-omic data, i.e., clinical measures, radiomic, and genetic data, capture multi-faceted tumor characteristics, contributing to a comprehensive patient risk assessment. Here, we investigate the additive value and independent reproducibility of integrated diagnostics in prediction of overall survival (OS) in isocitrate dehydrogenase (IDH)-wildtype GBM patients, by combining conventional and deep learning methods. Conventional radiomics and deep learning features were extracted from pre-operative multi-parametric MRI of 516 GBM patients. Support vector machine (SVM) classifiers were trained on the radiomic features in the discovery cohort (n = 404) to categorize patient groups of high-risk (OS < 6 months) vs all, and low-risk (OS ≥ 18 months) vs all. The trained radiomic model was independently tested in the replication cohort (n = 112) and a patient-wise survival prediction index was produced. Multivariate Cox-PH models were generated for the replication cohort, first based on clinical measures solely, and then by layering on radiomics and molecular information. Evaluation of the high-risk and low-risk classifiers in the discovery/replication cohorts revealed area under the ROC curves (AUCs) of 0.78 (95% CI 0.70–0.85)/0.75 (95% CI 0.64–0.79) and 0.75 (95% CI 0.65–0.84)/0.63 (95% CI 0.52–0.71), respectively. Cox-PH modeling showed a concordance index of 0.65 (95% CI 0.6–0.7) for clinical data improving to 0.75 (95% CI 0.72–0.79) for the combination of all omics. This study signifies the value of integrated diagnostics for improved prediction of OS in GBM.
The normal and fibrotic mouse lung classified by spatial proteomic analysis
Authors: Ciccimarra Roberta , Bolognesi Maddalena M. , Zoboli Matteo , Cattoretti Giorgio , Stellari Franco F. , Ravanetti Francesca 
Published: May 2022

AbstractSingle cell classification is elucidating homeostasis and pathology in tissues and whole organs. We applied in situ spatial proteomics by multiplex antibody staining to routinely processed mouse lung, healthy and during a fibrosis model. With a limited validated antibody panel (24) we classify the normal constituents (alveolar type I and II, bronchial epithelia, endothelial, muscular, stromal and hematopoietic cells) and by quantitative measurements, we show the progress of lung fibrosis over a 4 weeks course, the changing landscape and the cell-specific quantitative variation of a multidrug transporter. An early decline in AT2 alveolar cells and a progressive increase in stromal cells seems at the core of the fibrotic process.
No association between intravenous fluid volume and endothelial glycocalyx shedding in patients undergoing resuscitation for sepsis in the emergency department
Authors: Macdonald Stephen , Bosio Erika , Shapiro Nathan I. , Balmer Lois , Burrows Sally , Hibbs Moira , Jowitt Thomas , Smart Lisa , Arendts Glenn , Fatovich Daniel 
Published: May 2022

AbstractEndothelial glycocalyx (EG) shedding is associated with septic shock and described following intravenous (IV) fluid administration. To investigate the possible impact of IV fluids on the pathobiology of septic shock we investigated associations between biomarkers of EG shedding and endothelial cell activation, and relationships with IV fluid volume. Serum samples were obtained on admission (T0) and at 24 h (T24) in patients undergoing haemodynamic resuscitation for suspected septic shock in the emergency department. Biomarkers of EG shedding—Syndecan-1 (Syn-1), Syndecan-4 (Syn-4), Hyaluronan, endothelial activation—Endothelin-1 (ET-1), Angiopoeitin-2 (Ang-2), Vascular Endothelial Growth Factor Receptor-1(VEGF-1) and leucocyte activation/inflammation—Resistin, Neutrophil Gelatinase Associated Lipocalin (NGAL) and a marker of cardiac stretch—Pro-Atrial Natriuretic Peptide (Pro-ANP) were compared to the total IV fluid volume administered using Tobit regression. Data on 86 patients (52 male) with a mean age of 60 (SD 18) years were included. The mean fluid volume administered to T24 was 4038 ml (SD 2507 ml). No significant association between fluid volume and Pro-ANP or any of the biomarkers were observed. Syn-1 and Syn-4 were significantly correlated with each other (Spearman Rho 0.43, p < 0.001) but not with Hyaluronan. Syn-1 and Syn-4 both correlated with VEGFR-1 (Rho 0.56 and 0.57 respectively, p < 0.001) whereas Hyaluronan correlated with ET-1 (Rho 0.43, p < 0.001) and Ang-2 (Rho 0.43, p < 0.001). There was no correlation between Pro-ANP and any of the EG biomarkers. Distinct patterns of association between biomarkers of EG shedding and endothelial cell activation were observed among patients undergoing resuscitation for sepsis. No relationship between IV fluid volume and Pro-ANP or any of the other biomarkers was observed.
Effect of rock loading rate based on crack extension and propagation
Authors: Yang Mengze , Huang Houxu , Yang Yu 
Published: May 2022

AbstractWhen subjected to constant static load, after a period of damage accumulation and crack development, the rock will fail under a load lower than its compressive strength. The transform of loading rate may have a certain influence on the mechanical properties of rock. In order to investigate the effect of loading rate on mechanical properties of red sandstone, the propagation form of internal cracks in the subcritical propagation stage in rock under static loading is defined as tensile. Based on Maxwell model, the expression of effective tensile stress for crack extension in rock is deduced, which explains the phenomenon of rock tensile failure. Based on the uniaxial compression test of red sandstone under different loading rates, and the surface deformation field of specimens is analysed with the method of digital image correlation, and the corresponding relationship between the loading rate effect and the change of mechanical properties as well as the energy accumulation and release characteristics is analysed, the phenomenon of rock tensile failure is further verified. This research can be effectively applied to geotechnical engineering disaster warning.
Prognosis of patients with acute respiratory failure due to the SARS-CoV-2 501Y.V2 variant: a multicenter retrospective matched cohort study
Authors: Puech Bérénice , Legrand Antoine , Simon Olivier , Combe Chloé , Jaffar-Bandjee Marie-Christine , Caron Margot , Vidal Charles , Mavingui Patrick , Blonde Renaud , Boue Yvonnick , Berguigua Hamza , Allyn Jérôme , Bruneau Léa , Ferdynus Cyril , Allou Nicolas 
Published: May 2022

AbstractThe aim of this study was to compare the prognosis of patients with acute respiratory failure (ARF) due to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant 501Y.V2 to that of patients with ARF due to the original strain. This retrospective matched cohort study included all consecutive patients who were hospitalized for ARF due to SARS-CoV-2 in Reunion Island University Hospital between March 2020 and March 2021. Twenty-eight in hospital mortality was evaluated before and after matching. A total of 218 patients with ARF due to SARS-CoV-2 were enrolled in the study. Of these, 83 (38.1%) were infected with the 501Y.V2 variant. During intensive care unit stay, 104 (47.7%) patients received invasive mechanical ventilation and 20 (9.2%) patients were supported by venovenous extracorporeal membrane oxygenation. Patients infected with the 501Y.V2 variant were younger (58 [51–68] vs. 67 [56–74] years old, P = 0.003), had less hypertension (54.2% vs 68.1%, P = 0.04), and had less chronic kidney disease (13.3% vs. 31.9%, P = 0.002) than patients infected with the original strain. After controlling for confounding variables (62 matched patients in each group), 28-day mortality was higher in the group of patients infected with the 501Y.V2 variant (30.6%) than in the group of patients infected with the original strain (19.4%, P = 0.04). In Reunion Island, where SARS-CoV-2 incidence remained low until February 2021 and the health care system was never saturated, mortality was higher in patients with ARF infected with the 501Y.V2 variant than in patients infected with the original strain.
Identification of gene signatures for COAD using feature selection and Bayesian network approaches
Authors: Wang Yangyang , Gao Xiaoguang , Ru Xinxin , Sun Pengzhan , Wang Jihan 
Published: May 2022

AbstractThe combination of TCGA and GTEx databases will provide more comprehensive information for characterizing the human genome in health and disease, especially for underlying the cancer genetic alterations. Here we analyzed the gene expression profile of COAD in both tumor samples from TCGA and normal colon tissues from GTEx. Using the SNR-PPFS feature selection algorithms, we discovered a 38 gene signatures that performed well in distinguishing COAD tumors from normal samples. Bayesian network of the 38 genes revealed that DEGs with similar expression patterns or functions interacted more closely. We identified 14 up-DEGs that were significantly correlated with tumor stages. Cox regression analysis demonstrated that tumor stage, STMN4 and FAM135B dysregulation were independent prognostic factors for COAD survival outcomes. Overall, this study indicates that using feature selection approaches to select key gene signatures from high-dimensional datasets can be an effective way for studying cancer genomic characteristics.
In vivo multi spectral colonoscopy in mice
Authors: Hohmann Martin , Ganzleben Ingo , Grünberg Alexander , Gonzales-Menezes Jean , Klämpfl Florian , Lengenfelder Benjamin , Liebing Eva , Heichler Christina , Neufert Clemens , Becker Christoph , Neurath Markus F. , Waldner Maximilian J. , Schmidt Michael 
Published: May 2022

AbstractMulti- and hyperspectral endoscopy are possibilities to improve the endoscopic detection of neoplastic lesions in the colon and rectum during colonoscopy. However, most studies in this context are performed on histological samples/biopsies or ex vivo. This leads to the question if previous results can be transferred to an in vivo setting. Therefore, the current study evaluated the usefulness of multispectral endoscopy in identifying neoplastic lesions in the colon. The data set consists of 25 mice with colonic neoplastic lesions and the data analysis is performed by machine learning. Another question addressed was whether adding additional spatial features based on Gauss–Laguerre polynomials leads to an improved detection rate. As a result, detection of neoplastic lesions was achieved with an MCC of 0.47. Therefore, the classification accuracy of multispectral colonoscopy is comparable with hyperspectral colonoscopy in the same spectral range when additional spatial features are used. Moreover, this paper strongly supports the current path towards the application of multi/hyperspectral endoscopy in clinical settings and shows that the challenges from transferring results from ex vivo to in vivo endoscopy can be solved.
Comprehensive analysis of 65 patients with Castleman disease in a single center in China
Authors: Wang Xi-Qian , Zhong Nian-Nian , Sun Qi , Yan Si-Chen , Xu Guang-Cai , Wang Yong-Gong , Peng Li-Wei , Liu Bing , Bu Lin-Lin 
Published: May 2022

AbstractThis study aimed to investigate the epidemiologic, clinical, pathological characteristics, and treatment of patients with Castleman disease (CD) in a single center in China. We retrospectively analyzed the data of 65 Chinese CD patients, divided into unicentric CD (UCD) and multicentric CD (MCD) groups, and also microscopic subtypes as hypervascular (HV), plasmacytic (PC) and Mixed. Based on whether HHV-8 infection existed, MCD was subdivided into HHV-8-associated MCD and idiopathic Castleman disease (iMCD). Detailed epidemiologic, clinicopathological, and treatment data were analyzed and discussed. Of total 65 patients (UCD 33, MCD 32), HV (81.8%) accounted for the most of UCD and total. More females in UCD (60.6%) and more males in MCD (65.6%) were observed. CD occurred in all age groups, most commonly in 40–49 years. The mean age of onset of total was 38.5 years with PC higher than HV (45.5 vs. 35.1 years, P = 0.0413). The median diagnosis delay of MCD was longer than that of UCD (3.00 vs. 1.25 months, P = 0.0436). Abdomen (39.4%) and neck (30.3%) were the most-seen locations of lymphadenopathy in UCD, with neck (65.6%) being predominant in MCD. Mean major diameter of specimens of UCD was greater than MCD (6.4 vs. 3.1 cm, P < 0.0001). These results provided the featured and detailed profile of Castleman disease in Henan province in China with a considerable number of cases, which presented distinct evidence with other studies.
Kinetics and stoichiometry of gallic acid and methyl gallate in scavenging DPPH radical as affected by the reaction solvent
Authors: Shojaee Marzieh Sadat , Moeenfard Marzieh , Farhoosh Reza 
Published: May 2022

AbstractThe activity and capacity of gallic acid (GA) and methyl gallate (MG) in scavenging DPPH· were determined in different solvents. Based on the bimolecular rate constants k2, both antioxidants showed highest activities in EtOH, followed by in MeOH, t-BuOH, MeCN, 2-PrOH, acetone, THF, ethyl acetate, and 1,4-dioxane. GA indicated better activities (k2 value, M−1 s−1) than MG in the alcoholic solvents (51–1939 vs. 25–1530) and in MeCN (203 vs. 187) whereas MG was of higher activities in the polar aprotic solvents (1.7–41 vs. 1.6–13). The highest stoichiometries for GA vs. MG were in 2-PrOH (6.67 vs. 5.37), followed by EtOH (5.84 vs. 4.57), MeOH (5.34 vs. 3.8) ~ acetone (5.02 vs. 4.44), MeCN (3.68 vs. 3.05) ~ t-BuOH (3.14 vs. 2.99), THF (2.34 vs. 2.2), ethyl acetate (1.2 vs. 0.93), and 1,4-dioxane (0.34 vs. 0.35).
Antibody response and seroprevalence in healthcare workers after the BNT162b2 vaccination in a University Hospital at Tokyo
Authors: Igawa Gene , Ai Tomohiko , Yamamoto Takamasa , Ito Kanami , Nojiri Shuko , Saito Kaori , Wakita Mitsuru , Fukuda Hiroshi , Hori Satoshi , Misawa Shigeki , Miida Takashi , Seyama Kuniaki , Takahashi Kazuhisa , Tabe Yoko , Naito Toshio 
Published: May 2022

AbstractIn 2020, we reported a low seroprevalence of N-specific antibodies in 4147 health care workers (HCWs) at a frontline hospital in Tokyo, Japan. In Japan, a vaccine campaign was launched in early 2021. We re-evaluated seroprevalences of N- and S-specific antibodies in 2202 HCWs who took two doses of the BNT162b2 vaccine. In 2021, N-specific seroprevalence remains as low as 1.59%. The seroprevalences were comparable among all HCWs regardless of exposure levels. Almost all of the HCWs elicited S-specific antibodies after vaccination. However, the HCWs who had COVID-19 elicited higher S-specific antibody titers than those who did not have COVID-19. In the HCWs without a history of COVID-19, 1.1% (23 out of 2185) were seropositive with N-specific antibodies, indicating the existence of asymptomatic infections. Also, S-specific antibody titers were higher in females and younger HCWs, and in those who had severe side effects. However, S-specific antibody titers were lower depending on the number of days after the second dose of vaccination specifically in elderly individuals. In conclusion, this study indicates N-specific seroprevalence remains low in HCWs at a frontline hospital in Tokyo. The mRNA vaccine elicited S-specific antibody in HCWs, however, the titers decreased as the days proceeded.
Acinetobacter baumannii response to cefiderocol challenge in human urine
Authors: Nishimura Brent , Escalante Jenny , Tuttobene Marisel R. , Subils Tomás , Mezcord Vyanka , Pimentel Camila , Georgeos Nardin , Pasteran Fernando , Rodriguez Cecilia , Sieira Rodrigo , Actis Luis A. , Tolmasky Marcelo E. , Bonomo Robert A. , Ramirez María Soledad 
Published: May 2022

AbstractCefiderocol (CFDC) is a novel chlorocatechol-substituted siderophore antibiotic approved to treat complicated urinary tract infections (cUTI) and hospital-acquired and ventilator-acquired pneumonia (HAP/VAP). Previous work determined that albumin-rich human fluids increase the minimum inhibitory concentration (MICs) of Acinetobacter baumannii against CFDC and reduce the expression of genes related to iron uptake systems. This latter effect may contribute to the need for higher concentrations of CFDC to inhibit growth. The presence of human urine (HU), which contains low albumin concentrations, did not modify MIC values of two carbapenem-resistant A. baumannii. Levels of resistance to CFDC were not modified by HU in strain AMA40 but were reduced in strain AB5075. Expanding the studies to other carbapenem-resistant A. baumannii isolates showed that the presence of HU resulted in unmodified or reduced MIC of CDFC values. The expression of piuA, pirA, bauA, and bfnH determined by qRT-PCR was enhanced in A. baumannii AMA40 and AB5075 by the presence of HU in the culture medium. All four tested genes code for functions related to recognition and transport of ferric-siderophore complexes. The effect of HU on expression of pbp1, pbp3, blaOXA-51-like, blaADC, and blaNDM-1, genes associated with resistance to β-lactams, as well as genes coding for efflux pumps and porins was variable, showing dependence with the strain analyzed. We conclude that the lack of significant concentrations of albumin and free iron in HU makes this fluid behave differently from others we tested. Unlike other albumin rich fluids, the presence of HU does not impact the antibacterial activity of CFDC when tested against A. baumannii.
Advances in physicochemical characterization of lead-free hybrid perovskite [NH3(CH2)3NH3]CuBr4 crystals
Authors: Lim Ae Ran , Kwac Lee Ku 
Published: May 2022

AbstractTo support the development of eco-friendly hybrid perovskite solar cells, structural, thermal, and physical properties of the lead-free hybrid perovskite [NH3(CH2)3NH3]CuBr4 were investigated using X-ray diffraction (XRD), differential scanning calorimetry, thermogravimetric analysis, and nuclear magnetic resonance spectroscopy. The crystal structure confirmed by XRD was monoclinic, and thermodynamic stability was observed at approximately 500 K without any phase transition. The large changes in the 1H chemical shifts of NH3 and those in C2 close to N are affected by N–H∙∙∙Br hydrogen bonds because the structural geometry of CuBr4 changed significantly. The 1H and 13C spin–lattice relaxation times (T1ρ) showed very similar molecular motions according to the Bloembergen–Purcell–Pound theory at low temperatures; however, the 1H T1ρ values representing energy transfer were about 10 times lesser than those of 13C T1ρ. Finally, the 1H and 13C T1ρ values of [NH3(CH2)3NH3]MeBr4 (Me = Cu, Zn, and Cd) were compared with those reported previously. 1H T1ρ was affected by the paramagnetic ion of the anion, while 13C T1ρ was affected by the MeBr4 structure of the anion; 13C T1ρ values in Me = Cu and Cd with the octahedral MeBr6 structure had longer values than those in Me = Zn with the tetrahedral MeBr4 structure. We believe that these detailed insights on the physical properties will play a crucial role in the development of eco-friendly hybrid perovskite solar cells.
Paleoclimate-induced stress on polar forested ecosystems prior to the Permian–Triassic mass extinction
Authors: Gulbranson Erik L. , Mellum Morgan M. , Corti Valentina , Dahlseid Aidan , Atkinson Brian A. , Ryberg Patricia E. , Cornamusini Gianluca 
Published: May 2022

AbstractThe end-Permian extinction (EPE) has been considered to be contemporaneous on land and in the oceans. However, re-examined floristic records and new radiometric ages from Gondwana indicate a nuanced terrestrial ecosystem response to EPE global change. Paleosol geochemistry and climate simulations indicate paleoclimate change likely caused the demise of the widespread glossopterid ecosystems in Gondwana. Here, we evaluate the climate response of plants to the EPE via dendrochronology snapshots to produce annual-resolution records of tree-ring growth for a succession of late Permian and early Middle Triassic fossil forests from Antarctica. Paleosol geochemistry indicates a shift in paleoclimate towards more humid conditions in the Early and early Middle Triassic relative to the late Permian. Paleosol morphology, however, supports inferences of a lack of forested ecosystems in the Early Triassic. The plant responses to this paleoclimate change were accompanied by enhanced stress during the latest Permian as determined by high-resolution paleoclimate analysis of wood growth intervals. These results suggest that paleoclimate change during the late Permian exerted significant stress on high-latitude forests, consistent with the hypothesis that climate change was likely the primary driver of the extinction of the glossopterid ecosystems.