bluuebunny/crossref_metadata_2025_split huggingface dataset:
Cumulative and undiagnosed SARS-CoV-2 infection among the staff of a medical research centre in Tokyo after the emergence of variants
Authors: Mizoue Tetsuya , Yamamoto Shohei , Oshiro Yusuke , Inamura Natsumi , Nemoto Takashi , Horii Kumi , Okudera Kaori , Konishi Maki , Ozeki Mitsuru , Sugiyama Haruhito , Aoyanagi Nobuyoshi , Sugiura Wataru , Ohmagari Norio 
Published: March 2023

Abstract
To describe the trend of cumulative incidence of coronavirus disease 19 (COVID-19) and undiagnosed cases over the pandemic through the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants among healthcare workers in Tokyo, we analysed data of repeated serological surveys and in-house COVID-19 registry among the staff of National Center for Global Health and Medicine. Participants were asked to donate venous blood and complete a survey questionnaire about COVID-19 diagnosis and vaccine. Positive serology was defined as being positive on Roche or Abbott assay against SARS-CoV-2 nucleocapsid protein, and cumulative infection was defined as either being seropositive or having a history of COVID-19. Cumulative infection has increased from 2.0% in June 2021 (pre-Delta) to 5.3% in December 2021 (post-Delta). After the emergence of the Omicron, it has increased substantially during 2022 (16.9% in June and 39.0% in December). As of December 2022, 30% of those who were infected in the past were not aware of their infection. Results indicate that SARS-CoV-2 infection has rapidly expanded during the Omicron-variant epidemic among healthcare workers in Tokyo and that a sizable number of infections were undiagnosed.
Can the use of knowledge-based planning systems improve stereotactic radiotherapy planning? A systematic review
Authors: Robinson Andrew , Gleeson Ian , Ajithkuma Thankamma 
Published: March 2023

AbstractIntroduction:This study aimed to systematically review the literature to synthesise and summarise whether using knowledge-based planning (KBP) can improve the planning of stereotactic radiotherapy treatments.Methods:A systematic literature search was carried out using Medline, Scopus and Cochrane databases to evaluate the use of KBP planning in stereotactic radiotherapy. Three hundred twenty-five potential studies were identified and screened to find 25 relevant studies.Results:Twenty-five studies met the inclusion criteria. Where a commercial KBP was used, 72.7% of studies reported a quality improvement, and 45.5% reported a reduction in planning time. There is evidence that when used as a quality control tool, KBP can highlight stereotactic plans that need revision. In studies that use KBP as the starting point for radiotherapy planning optimisation, the radiotherapy plans generated are typically equal to or superior to those planned manually.Conclusions:There is evidence that KBP has the potential to improve the quality and speed of stereotactic radiotherapy planning. Further research is required to accurately quantify such systems’ quality improvements and time savings. Notably, there has been little research into their use for prostate, spinal or liver stereotactic radiotherapy, and research in these areas would be desirable. It is recommended that future studies use the ICRU 91 level 2 reporting format and that blinded physician review could add a qualitative assessment of KBP system performance.
Assessment of molecular diversity in doubled haploid lines of camelina (Camelina sativa(L.) Crantz), as a new emerging oil crop
Authors: Sadeghikian Mozafar , Najaphy Abdollah , Kahrizi Danial , Rostami Amadvandi Hossein 
Published: March 2023

AbstractCamelina (Camelina sativa(L.) Crantz), an oilseed crop, belongs to the Brassicaceae family. Two unique features of camelina in comparison with the main oil crops are an adaptation to different environments and also its unique oil composition. The development of doubled haploid plants is one of the essential methods for crop improvement. The study of genetic diversity is an important step in planning crop breeding programmes. This research was conducted to evaluate the genetic variation of 81 camelina doubled haploid lines obtained from 15 crosses by inter simple sequence repeat (ISSR) markers. The total number of amplified bands was 243, of which 239 bands (98.3%) showed polymorphism. The percentage of polymorphic bands varied between 93.75 and 100. The size of the bands ranged from 50 to 1700 base pairs. The informative ISSRs were identified by estimating marker features: polymorphism information content, effective multiplex ratio, marker index and resolving power. Three markers had higher resolving power values (9.88, 8.5 and 7.46) and were the most informative markers to identify the lines. Cluster analysis based on the complete algorithm divided the lines into five groups, indicating relatively clear configuration from the geographic distribution patterns of the parents of the doubled haploid lines. Principal coordinate analysis classified the 81 camelina doubled haploid lines into six groups. The ISSR markers detected high polymorphism to reveal the genetic variation of camelina lines. The findings of this research, along with the characterization of biochemical traits of the lines, can improve breeding programmes achieve high-yielding camelina varieties with higher and better oil content.
Tonian Low‐Latitude Marine Ecosystems Were Cold Before Snowball Earth
Authors: Trower Elizabeth J. , Gutoski James R. , Wala Virginia T. , Mackey Tyler J. , Simpson Carl 
Published: March 2023

AbstractPrecambrian marine carbonate strata are commonly assumed to have formed in warm‐water carbonate factories due to the temperature dependence of non‐skeletal carbonate precipitation rates. However, some climate models and geological observations suggest that global climate was cool for tens of millions of years prior to the onset of Snowball Earth glaciation at ∼717 Ma, in conflict with common interpretations of pre‐glacial carbonates as warm‐water carbonate factories. We report the occurrence of guttulatic microfabric—a petrographic fingerprint of ikaite, a carbonate mineral that only forms in cold sedimentary environments—in the Beck Spring Dolomite, a carbonate succession deposited in a low‐latitude shallow marine environment between ∼780 and 730 Ma. This interpretation of pre‐glacial carbonate factories aligns cold conditions with vase‐shaped microfossils, possible algal fossils, and molecular clock dates for crown‐group metazoans. Our observations indicate that these marine ecosystems were able to thrive in cold low‐latitude environments millions of years before the Snowball glaciations.
Very Low Frequency Earthquakes Modulate Regular Fast Earthquakes at the Central Range in Taiwan
Authors: Chaudhuri K. , Ghosh A. 
Published: March 2023

AbstractSlow earthquakes in the form of tremors and low frequency earthquakes (low‐frequency earthquakes) occur along the south‐central range of Taiwan (Aguiar et al., 2017, https://doi.org/10.1002/2016gl072148; Chao et al., 2012, https://doi.org/10.1111/j.1365-246x.2011.05261.x; Tang et al., 2010, https://doi.org/10.1029/2010gl043918). This study detects discrete very low frequency earthquakes (VLFEs) using a grid‐search moment tensor inversion algorithm (Ghosh et al., 2015, https://doi.org/10.1002/2015gl063286; Hutchison & Ghosh, 2019, https://doi.org/10.1029/2018jb016138). By applying a matched filtered technique, we have created a robust VLFE catalog for 3 years. The two VLFEs closer to the tremor‐producing region show a temporal relationship, but the western VLFE is the most active among the three. Our VLFE catalog of high temporal resolution allows us to identify a significant increase in VLFE activities preceding earthquake swarms. An empirical comparison of the VLFE catalog with regional and local cataloged fast earthquakes reveals two such instances. We show that fluid migration from deeper to shallower crust explains this modulation of regular fast earthquakes by VLFEs.
Impact of COVID‐19‐Related Air Traffic Reductions on the Coverage and Radiative Effects of Linear Persistent Contrails Over Conterminous United States and Surrounding Oceanic Routes
Authors: Duda David P. , Smith William L. , Bedka Sarah , Spangenberg Douglas , Chee Thad , Minnis Patrick 
Published: March 2023

AbstractThe radiative effects of the large‐scale air traffic slowdown during April and May 2020 due to the international response to the COVID‐19 pandemic are estimated by comparing the coverage (CC), optical properties, and radiative forcing of persistent linear contrails over the conterminous United States and two surrounding oceanic air corridors during the slowdown period and a similar baseline period during 2018 and 2019 when air traffic was unrestricted. The detected CC during the slowdown period decreased by an area‐averaged mean of 41% for the three analysis boxes. The retrieved contrail optical properties were mostly similar for both periods. Total shortwave contrail radiative forcings (CRFs) during the slowdown were 34% and 42% smaller for Terra and Aqua, respectively. The corresponding differences for longwave CRF were 33% for Terra and 40% for Aqua. To account for the impact of any changes in the atmospheric environment between baseline and slowdown periods on detected CC amounts, the contrail formation potential (CFP) was computed from reanalysis data. In addition, a filtered CFP (fCFP) was also developed to account for factors that may affect contrail formation and visibility of persistent contrails in satellite imagery. The CFP and fCFP were combined with air traffic data to create empirical models that estimated CC during the baseline and slowdown periods and were compared to the detected CC. The models confirm that decreases in CC and radiative forcing during the slowdown period were mostly due to the reduction in air traffic, and partly due to environmental changes.
Controlled on-chip fabrication of large-scale perovskite single crystal arrays for high-performance laser and photodetector integration
Authors: Xu Zhangsheng , Han Xun , Wu Wenqiang , Li Fangtao , Wang Ru , Lu Hui , Lu Qiuchun , Ge Binghui , Cheng Ningyan , Li Xiaoyi , Yao Guangjie , Hong Hao , Liu Kaihui , Pan Caofeng 
Published: March 2023

AbstractMetal halide perovskites possess intriguing optoelectronic properties, however, the lack of precise control of on-chip fabrication of the large-scale perovskite single crystal arrays restricts its application in integrated devices. Here, we report a space confinement and antisolvent-assisted crystallization method for the homogeneous perovskite single crystal arrays spanning 100 square centimeter areas. This method enables precise control over the crystal arrays, including different array shapes and resolutions with less than 10%-pixel position variation, tunable pixel dimensions from 2 to 8 μm as well as the in-plane rotation of each pixel. The crystal pixel could serve as a high-quality whispering gallery mode (WGM) microcavity with a quality factor of 2915 and a threshold of 4.14 μJ cm−2. Through directly on-chip fabrication on the patterned electrodes, a vertical structured photodetector array is demonstrated with stable photoswitching behavior and the capability to image the input patterns, indicating the potential application in the integrated systems of this method.
WFDC12-overexpressing contributes to the development of atopic dermatitis via accelerating ALOX12/15 metabolism and PAF accumulation
Authors: Li Guolin , Gu Linna , Zhao Fulei , Hu Yawen , Wang Xiaoyan , Zeng Fanlian , Yu Jiadong , Yue Chengcheng , Zhou Pei , Li Ya , Feng Yuting , Hu Jing , Huang Nongyu , Wu Wenling , Cui Kaijun , Li Wei , Li Jiong 
Published: March 2023

AbstractAtopic dermatitis (AD) is a chronic inflammatory skin disease characterized by eczema-like skin lesions, dry skin, severe itching, and recurrent recurrence. The whey acidic protein four-disulfide core domain gene WFDC12 is highly expressed in skin tissue and up-regulated in the skin lesions of AD patients, but its role and relevant mechanism in AD pathogenesis have not been studied yet. In this study, we found that the expression of WFDC12 was closely related to clinical symptoms of AD and the severity of AD-like lesions induced by DNFB in transgenic mice. WFDC12-overexpressing in the epidermis might promote the migration of skin-presenting cells to lymph nodes and increase Th cell infiltration. Meanwhile, the number and ratio of immune cells and mRNA levels of cytokines were significantly upregulated in transgenic mice. In addition, we found that ALOX12/15 gene expression was upregulated in the arachidonic acid metabolism pathway, and the corresponding metabolite accumulation was increased. The activity of epidermal serine hydrolase decreased and the accumulation of platelet-activating factor (PAF) increased in the epidermis of transgenic mice. Collectively, our data demonstrate that WFDC12 may contribute to the exacerbation of AD-like symptoms in DNFB-induced mouse model by enhancing arachidonic acid metabolism and PAF accumulation and that WFDC12 may be a potential therapeutic target for human atopic dermatitis.
Hemodynamic profiles of arterial hypertension with ambulatory blood pressure monitoring
Authors: Aristizábal-Ocampo Dagnovar , Álvarez-Montoya Diego , Madrid-Muñoz Camilo , Fallon-Giraldo Simon , Gallo-Villegas Jaime 
Published: March 2023

AbstractBlood pressure (BP) measurements obtained during a twenty-four-hour ambulatory blood pressure monitoring (24 h ABPM) have not been reliably applied to extract arterial hemodynamics. We aimed to describe the hemodynamic profiles of different hypertension (HT) subtypes derived from a new method for total arterial compliance (Ct) estimation in a large group of individuals undergoing 24 h ABPM. A cross-sectional study was conducted, which included patients with suspected HT. Cardiac output, Ct, and total peripheral resistance (TPR) were derived through a two-element Windkessel model without having a pressure waveform. Arterial hemodynamics were analyzed according to HT subtypes in 7434 individuals (5523 untreated HT and 1950 normotensive controls [N]). The individuals mean age was 46.2 ± 13.0 years; 54.8% were male, and 22.1% were obese. In isolated diastolic hypertension (IDH), the cardiac index (CI) was greater than that in normotensive (N) controls (CI: IDH vs. N mean difference 0.10 L/m/m2; CI 95% 0.08 to 0.12; p value <0.001), with no significant clinical difference in Ct. Isolated systolic hypertension (ISH) and divergent systolic-diastolic hypertension (D-SDH) had lower Ct values than nondivergent HT subtype (Ct: divergent vs. nondivergent mean difference −0.20 mL/mmHg; CI 95% −0.21 to −0.19 mL/mmHg; p value <0.001). Additionally, D-SDH displayed the highest TPR (TPR: D-SDH vs. N mean difference 169.8 dyn*s/cm−5; CI 95% 149.3 to 190.3 dyn*s/cm−5; p value <0.001). A new method is provided for the simultaneous assessment of arterial hemodynamics with 24 h ABPM as a single diagnostic tool, which allows a comprehensive assessment of arterial function for hypertension subtypes.
Does the place of residence influence your risk of being hypertensive? A study-based on Nepal Demographic and Health Survey
Authors: Sharma Ishor , Karen Campbell M. , Choi Yun-Hee , Luginaah Isaac , Were Jason Mulimba , Vargas- Gonzalea Juan-Camilo , Stranges Saverio 
Published: March 2023

AbstractEven though several studies have examined various risk factors for hypertension, residential influence is poorly explored especially in the low-income countries. We aim to investigate the association between residential characteristics and hypertension in resource limited and transitional settings like Nepal. A total of 14,652 individuals aged 15 and above were selected from 2016-Nepal Demographic and Health Survey. Individuals with blood pressure ≥140/90 mmHg or a history of hypertension (as identified by physicians/health professionals) or under antihypertensive medication were defined as hypertensive. Residential characteristics were represented by area level deprivation index, with a higher score representing higher level of deprivation. Association was explored using a two-level logistic regression. We also assessed if residential area modifies the association between individual socio-economic status and hypertension. Area deprivation had a significant inverse association with the risk of hypertension. Individuals from the least deprived areas had higher odds of hypertension compared to highly deprived areas 1.59 (95% CI 1.30, 1.89). Additionally, the association between literacy a proxy of socio-economic status and hypertension varied with a place of residence. Literate individuals from highly deprived areas were likely to have a higher odds of hypertension compared to those with no formal education. In contrast, literate from the least deprived areas had lower odds of hypertension. These results identify counterintuitive patterns of associations between residential characteristics and hypertension in Nepal, as compared with most of the epidemiological data from high-income countries. Differential stages of demographic and nutritional transitions between and within the countries might explain these associations.
CTCF controls three-dimensional enhancer network underlying the inflammatory response of bone marrow-derived dendritic cells
Authors: Yang Bobae , Kim Sueun , Jung Woong-Jae , Kim Kyungwoo , Kim Sugyung , Kim Yong-Jin , Kim Tae-Gyun , Lee Eun-Chong , Joo Jung-Sik , Park Chae Gyu , Oh Sumin , Yoo Kyung Hyun , Kim Hyoung-Pyo 
Published: March 2023

AbstractDendritic cells are antigen-presenting cells orchestrating innate and adaptive immunity. The crucial role of transcription factors and histone modifications in the transcriptional regulation of dendritic cells has been extensively studied. However, it is not been well understood whether and how three-dimensional chromatin folding controls gene expression in dendritic cells. Here we demonstrate that activation of bone marrow-derived dendritic cells induces extensive reprogramming of chromatin looping as well as enhancer activity, both of which are implicated in the dynamic changes in gene expression. Interestingly, depletion of CTCF attenuates GM-CSF-mediated JAK2/STAT5 signaling, resulting in defective NF-κB activation. Moreover, CTCF is necessary for establishing NF-κB-dependent chromatin interactions and maximal expression of pro-inflammatory cytokines, which prime Th1 and Th17 cell differentiation. Collectively, our study provides mechanistic insights into how three-dimensional enhancer networks control gene expression during bone marrow-derived dendritic cells activation, and offers an integrative view of the complex activities of CTCF in the inflammatory response of bone marrow-derived dendritic cells.
A case study of impacts of an extreme weather system on the Mediterranean Sea circulation features: Medicane Apollo (2021)
Authors: Menna Milena , Martellucci Riccardo , Reale Marco , Cossarini Gianpiero , Salon Stefano , Notarstefano Giulio , Mauri Elena , Poulain Pierre-Marie , Gallo Antonella , Solidoro Cosimo 
Published: March 2023

AbstractThe attention of the scientific community, policymakers, and public opinion on the Medicanes has recently grown because of their increase in intensity and harmful potential. Although Medicanes may be influenced by pre-existing upper-ocean conditions, uncertainties remain about how such weather extremes influence ocean circulation. This work examines a condition that has been never described before in the Mediterranean, which involves the interplay between an atmospheric cyclone (Medicane Apollo—October 2021) and a cyclonic gyre located in the western Ionian Sea. During the event, the temperature in the core of the cold gyre dropped dramatically, due to a local maximum in the wind-stress curl, Ekman pumping, and relative vorticity. Cooling and vertical mixing of the surface layer combined with upwelling in the subsurface layer caused a shoaling of the Mixed Layer Depth, halocline, and nutricline. The resulting biogeochemical impacts included an increase in oxygen solubility, chlorophyll concentration, productivity at the surface, and decreases in the subsurface layer. The presence of a cold gyre along Apollo's trajectory leads to a different ocean response from that observed with previous Medicanes, endorsing the efficiency of a multi-platform observation system integrated into an operational model for future mitigation of weather-related damages.
A mitochondrial function-related LncRNA signature predicts prognosis and immune microenvironment for breast cancer
Authors: Wang Yuan , Gao Shun , Xu Yingkun , Tang Zhenrong , Liu Shengchun 
Published: March 2023

AbstractMitochondrial function, as the core of the cell's energy metabolism, is firmly connected to cancer metabolism and growth. However, the involvement of long noncoding RNAs (lncRNAs) related to mitochondrial function in breast cancer (BRCA) has not been thoroughly investigated. As a result, the objective of this research was to dissect the prognostic implication of mitochondrial function-related lncRNAs and their link to the immunological microenvironment in BRCA. The Cancer Genome Atlas (TCGA) database was used to acquire clinicopathological and transcriptome information for BRCA samples. Mitochondrial function-related lncRNAs were recognized by coexpression analysis of 944 mitochondrial function-related mRNAs obtained from the MitoMiner 4.0 database. A novel prognostic signature was built in the training cohort using integrated analysis of mitochondrial function-related lncRNA and the corresponding clinical information through univariate analysis, lasso regression, and stepwise multivariate Cox regression analysis. The prognostic worth was judged in the training cohort and validated in the test cohort. In addition, functional enrichment and immune microenvironment analyses were performed to explore the risk score on the basis of the prognostic signature. An 8-mitochondrial function-related lncRNA signature was generated by integrated analysis. Individuals within the higher-risk category had a worse overall survival rate (OS) (training cohort: P < 0.001; validation cohort: P < 0.001; whole cohort: P < 0.001). The risk score was identified as an independent risk factor by multivariate Cox regression analysis (training cohort: HR 1.441, 95% CI 1.229–1.689, P < 0.001; validation cohort: HR 1.343, 95% CI 1.166–1.548, P < 0.001; whole cohort: HR 1.241, 95% CI 1.156–1.333, P < 0.001). Following that, the predictive accuracy of the model was confirmed by the ROC curves. In addition, nomograms were generated, and the calibration curves revealed that the model had excellent prediction accuracy for 3- and 5-year OS. Besides, the higher-risk BRCA individuals have relatively decreased amounts of infiltration of tumor-killing immune cells, lower levels of immune checkpoint molecules, and immune function. We constructed and verified a novel mitochondrial function-related lncRNA signature that might accurately predict the outcome of BRCA, play an essential role in immunotherapy, and might be exploited as a therapeutic target for precise BRCA therapy.
A hybrid classical-quantum approach to speed-up Q-learning
Authors: Sannia A. , Giordano A. , Gullo N. Lo , Mastroianni C. , Plastina F. 
Published: March 2023

AbstractWe introduce a classical-quantum hybrid approach to computation, allowing for a quadratic performance improvement in the decision process of a learning agent. Using the paradigm of quantum accelerators, we introduce a routine that runs on a quantum computer, which allows for the encoding of probability distributions. This quantum routine is then employed, in a reinforcement learning set-up, to encode the distributions that drive action choices. Our routine is well-suited in the case of a large, although finite, number of actions and can be employed in any scenario where a probability distribution with a large support is needed. We describe the routine and assess its performance in terms of computational complexity, needed quantum resource, and accuracy. Finally, we design an algorithm showing how to exploit it in the context of Q-learning.