bluuebunny/crossref_metadata_2025_split huggingface dataset:
The generation of the first chromosome-level de novo genome assembly and the development and validation of a 50K SNP array for the St. John River aquaculture strain of North American Atlantic salmon
Authors: Gao Guangtu , Waldbieser Geoffrey C , Youngblood Ramey C , Zhao Dongyan , Pietrak Michael R , Allen Melissa S , Stannard Jason A , Buchanan John T , Long Roseanna L , Milligan Melissa , Burr Gary , Mejía-Guerra Katherine , Sheehan Moira J , Scheffler Brian E , Rexroad Caird E , Peterson Brian C , Palti Yniv 
Published: June 2023

Abstract
Atlantic salmon (Salmo salar) in Northeastern US and Eastern Canada has high economic value for the sport fishing and aquaculture industries. Large differences exist between the genomes of Atlantic salmon of European origin and North American (N.A.) origin. Given the genetic and genomic differences between the 2 lineages, it is crucial to develop unique genomic resources for N.A. Atlantic salmon. Here, we describe the resources that we recently developed for genomic and genetic research in N.A. Atlantic salmon aquaculture. Firstly, a new single nucleotide polymorphism (SNP) database for N.A. Atlantic salmon consisting of 3.1 million putative SNPs was generated using data from whole-genome resequencing of 80 N.A. Atlantic salmon individuals. Secondly, a high-density 50K SNP array enriched for the genic regions of the genome and containing 3 sex determination and 61 putative continent of origin markers was developed and validated. Thirdly, a genetic map composed of 27 linkage groups with 36K SNP markers was generated from 2,512 individuals in 141 full-sib families. Finally, a chromosome-level de novo genome assembly from a male N.A. Atlantic salmon from the St. John River aquaculture strain was generated using PacBio long reads. Information from Hi-C proximity ligation sequences and Bionano optical mapping was used to concatenate the contigs into scaffolds. The assembly contains 1,755 scaffolds and only 1,253 gaps, with a total length of 2.83 Gb and N50 of 17.2 Mb. A BUSCO analysis detected 96.2% of the conserved Actinopterygii genes in the assembly, and the genetic linkage information was used to guide the formation of 27 chromosome sequences. Comparative analysis with the reference genome assembly of the European Atlantic salmon confirmed that the karyotype differences between the 2 lineages are caused by a fission in chromosome Ssa01 and 3 chromosome fusions including the p arm of chromosome Ssa01 with Ssa23, Ssa08 with Ssa29, and Ssa26 with Ssa28. The genomic resources we have generated for Atlantic salmon provide a crucial boost for genetic research and for management of farmed and wild populations in this highly valued species.
The organizational and technological origins of the U.S. shale gas revolution, 1947 to 2012
Authors: Kapoor Rahul , Murmann Johann Peter 
Published: June 2023

Abstract
We explore the origins and the development of hydraulic fracking technology that made possible United States’ unexpected rise as a top producer of oil and gas. As hydraulic fracking was first used extensively to produce shale gas and only later to produce shale oil, we focus on analyzing what is often referred to as the “shale gas revolution.” We trace how the shale gas ecosystem evolved, what role different actors played in the unexpected shale gas revolution, and how the strategies and knowledge bases of the different actors differed and evolved over time.
Analysis of thermoelectric effect of wet spun graphene fiber composites
Authors: Dlimi Said , Elmourabit Fahd , Ouissaaden Fatima Id , Khoukh Abdelaziz , Limouny Lhoussine , Baghaz Elhadi , El kaaouachi Abdelhamid 
Published: June 2023

Abstract
In this manuscript, we have theoretically reanalyzed data prepared and already published by Foroughi et al. (RSC Adv 2016;6:46427–32). These data concern the thermal energy dependence of the electrical conductivity of the samples: graphene fiber, graphene/poly(3,4-ethylenedioxythiophene) (graphene/PEDOT), graphene/carbon nanotube (graphene/CNT) and graphene/carbon nonotube/poly(3,4-ethylenedioxythiophene) (graphene/CNT/PEDOT) composite fibers. We investigate the behavior of the thermal conductivity for these four samples. These samples are considered as thermoelectric materials or green energy conversion materials using the Seebeck effect to transform heat into electrical energy and vice versa. In this context, the optimization of the merit factor ZT remains a challenge for the scientific community. The objective of this investigation is to evaluate and characterize the thermoelectric efficiency of the above-mentioned samples. We confront the experimental data with the existing theoretical models. The thermoelectric efficiency is generally characterized by the merit factor ZT. The maximum ZT of about 1,2 is obtained in the graphene fiber and between 0,1 and 0,2 in the others samples. The performance of the material depends on ZT; indeed a high ZT ($\mathrm{ZT}\ge 1$) corresponds to a better optimization of the composite.
Effect of increasing dietary fermentable fiber on diet nutrient digestibility and estimation of endogenous phosphorus losses in growing pigs
Authors: Heyer Charlotte M E , Wang Li Fang , Beltranena Eduardo , Rodehutscord Markus , Zijlstra Ruurd T 
Published: June 2023

AbstractFermentable fiber may increase endogenous losses of phosphorus (EPL) and amino acids (AA), thereby reducing apparent nutrient digestibility. Acacia gum with medium-to-high fermentability and low viscosity was increasingly included in diets to investigate its effect on apparent ileal digestibility (AID) and apparent total tract digestibility (ATTD) of nutrients, gross energy (GE), and standardized total tract digestibility (STTD) of P in growing pigs. A control diet (49% cornstarch; 18% bovine plasma protein) was formulated to measure basal EPL. Three additional diets were formulated to include 2.5%, 5.0%, or 7.5% acacia gum at the expense of cornstarch. Diets contained 16.1% to 17.4% CP and 0.31% to 0.33% total P (DM-basis). The four diets were fed to eight ileal-cannulated barrows (initial BW, 54.6 kg) for four 9 d periods in a double 4 × 4 Latin square. Apparent hindgut fermentation (AHF) was calculated as ATTD minus AID. Feeding increasing acacia gum quadratically affected (P &lt; 0.05) AID of DM, GE, linearly decreased (P &lt; 0.05) ATTD of DM, crude protein (CP), GE, digestible (DE) and predicted net energy (NE) value of diets, and linearly increased (P &lt; 0.001) AHF of DM and GE. Increasing acacia gum did not affect AID and standardized ileal digestibility (SID) of CP and AA. Basal EPL was 377 mg/kg DM intake (DMI) and increasing acacia gum linearly increased (P &lt; 0.05) total tract EPL. Increasing acacia gum linearly decreased (P &lt; 0.05) diet ATTD of P, and STTD of P based on either the calculated EPL or NRC (2012) recommended value (190 mg P/kg DMI). Increasing acacia gum did not affect AID and ATTD of Ca of diets. In conclusion, feeding increasing dietary fermentable, low-viscous acacia gum decreased diet AID and ATTD of DM and GE, but did not affect AID or SID of CP and AA. Increasing acacia gum decreased ATTD of P, which might have been due to increased specific endogenous losses of P in the total tract of growing pigs.
Perifascial Areolar Tissue Transplantation for Covering Exposed Proximal Interphalangeal Joint After Electric Burn
Authors: Oshima Junya , Sasaki Masahiro , Sasaki Kaoru , Sekido Mitsuru 
Published: June 2023

Abstract
Soft tissue damage in electric burn injuries is often deep and may expose tendons, bones, or joints in the hand. Here, we present the case of a 76-year-old man treated using perifascial areolar tissue (PAT) transplantation for covering the proximal interphalangeal joint of the middle finger, which had been exposed because of an electric burn. Following ointment therapy, surgery was performed on day 34 postinjury when a deep ulcer with opening of the proximal interphalangeal joint was observed on the dorsum of the right middle finger. After resecting the cartilage of the proximal interphalangeal articular surface, two Kirschner wires were inserted, and arthrodesis was performed. PAT was harvested from the left inguinal region and applied to the joint exposed wound of the middle finger. Full-thickness skin graft was applied over it. Three months after surgery, the preserved middle finger could be used as a functional finger. PAT transplantation does not require microsurgery techniques, is simple and minimally invasive, and has a short treatment period, so it may be an effective option for treating wounds in which exposed ischemic tissue is present. Soft tissue damage in electric burn injuries is often deep and may expose tendons, bones, and joints in the hand, which is the most common affected site. Here, we report a case treated using perifascial areolar tissue (PAT) transplantation for covering the proximal interphalangeal joint of the middle finger, which had been exposed because of an electric burn.
Barriers and facilitators to implementation of healthy food and drink policies in public sector workplaces: a systematic literature review
Authors: Rosin Magda , Mackay Sally , Gerritsen Sarah , Te Morenga Lisa , Terry Gareth , Ni Mhurchu Cliona 
Published: June 2023

Abstract

Context
Many countries and institutions have adopted policies to promote healthier food and drink availability in various settings, including public sector workplaces.

Objective
The objective of this review was to systematically synthesize evidence on barriers and facilitators to implementation of and compliance with healthy food and drink policies aimed at the general adult population in public sector workplaces.

Data Sources
Nine scientific databases, 9 grey literature sources, and government websites in key English-speaking countries along with reference lists.

Data Extraction
All identified records (N = 8559) were assessed for eligibility. Studies reporting on barriers and facilitators were included irrespective of study design and methods used but were excluded if they were published before 2000 or in a non-English language.

Data Analysis
Forty-one studies were eligible for inclusion, mainly from Australia, the United States, and Canada. The most common workplace settings were healthcare facilities, sports and recreation centers, and government agencies. Interviews and surveys were the predominant methods of data collection. Methodological aspects were assessed with the Critical Appraisal Skills Program Qualitative Studies Checklist. Generally, there was poor reporting of data collection and analysis methods. Thematic synthesis identified 4 themes: (1) a ratified policy as the foundation of a successful implementation plan; (2) food providers’ acceptance of implementation is rooted in positive stakeholder relationships, recognizing opportunities, and taking ownership; (3) creating customer demand for healthier options may relieve tension between policy objectives and business goals; and (4) food supply may limit the ability of food providers to implement the policy.

Conclusions
Findings suggest that although vendors encounter challenges, there are also factors that support healthy food and drink policy implementation in public sector workplaces. Understanding barriers and facilitators to successful policy implementation will significantly benefit stakeholders interested or engaging in healthy food and drink policy development and implementation.

Systematic Review Registration
PROSPERO registration no. CRD42021246340.
Local Social Vulnerability as a Predictor for Cancer-Related Mortality Among US Counties
Authors: Chen Krista Y , Blackford Amanda L , Sedhom Ramy , Gupta Arjun , Hussaini S M Qasim 
Published: June 2023

Abstract
Substantial gaps in national healthcare spending and disparities in cancer mortality rates are noted across counties in the US. In this cross-sectional analysis, we investigated whether differences in local county-level social vulnerability impacts cancer-related mortality. We linked county-level age-adjusted mortality rates (AAMR) from the Centers for Disease Control and Prevention (CDC) Wide-ranging Online Data for Epidemiologic Research database, to county-level Social Vulnerability Index (SVI) from the CDC Agency for Toxic Substances and Disease Registry. SVI is a metric comprising 15 social factors including socioeconomic status, household composition and disability, minority status and language, and housing type and transportation. AAMRs were compared between least and most vulnerable counties using robust linear regression models. There were 4 107 273 deaths with an overall AAMR of 173 per 100 000 individuals. Highest AAMRs were noted in older adults, men, non-Hispanic Black individuals, and rural and Southern counties. Highest mortality risk increases between least and most vulnerable counties were noted in Southern and rural counties, individuals aged 45-65, and lung and colorectal cancers, suggesting that these groups may face highest risk for health inequity. These findings inform ongoing deliberations in public health policy at the state and federal level and encourage increased investment into socially disadvantaged counties.
Plant-specific BLISTER interacts with kinase BIN2 and BRASSINAZOLE RESISTANT1 during skotomorphogenesis
Authors: Yang Ruizhen , Liu Pan , Zhang Tianren , Dong Huixue , Jing Yexing , Yang Ziyi , Tang Sha , Zhang Yu , Lv Mingjie , Liu Jun , Zhang Yunwei , Qiao Weihua , Liu Jie , Sun Jiaqiang 
Published: June 2023

Abstract
Brassinosteroids play an essential role in promoting skotomorphogenesis, yet the underlying mechanisms remain unknown. Here we report that a plant-specific BLISTER (BLI) protein functions as a positive regulator of both BR signaling and skotomorphogenesis in Arabidopsis (Arabidopsis thaliana). We found that the glycogen synthase kinase 3 (GSK3)-like kinase BRASSINOSTEROID INSENSITIVE2 interacts with and phosphorylates BLI at 4 phosphorylation sites (Ser70, Ser146, Thr256, and Ser267) for degradation; in turn, BR inhibits degradation of BLI. Specifically, BLI cooperates with the BRASSINAZOLE RESISTANT1 (BZR1) transcription factor to facilitate the transcriptional activation of BR-responsive genes. Genetic analyses indicated that BLI is essentially required for BZR1-mediated hypocotyl elongation in the dark. Intriguingly, we reveal that BLI and BZR1 orchestrate the transcriptional expression of gibberellin (GA) biosynthetic genes to promote the production of bioactive GAs. Our results demonstrate that BLI acts as an essential regulator of Arabidopsis skotomorphogenesis by promoting BR signaling and GA biosynthesis.
Brazilian Air Force acquisition policies: observing absorptive capacity and contingent factors in aeronautical beneficiary companies
Authors: Caliari Thiago , Bovo Mayara , Urbina Lígia Maria Soto , Scarpel Rodrigo Arnaldo 
Published: June 2023

AbstractThe offset agreement (OA) of the Brazilian Air Force (FAB) is a demand-side policy aiming to improve innovative capacities. However, it may be constrained by companies’ absorptive capacities, relationship features, and sectoral specificities. This study examines these issues in a small but representative sample of domestic beneficiary firms from the FAB’s OA. The model in the study by Zahra and George, along with contingent factors such as power relationship and social integration mechanisms, inspired the design of the research tools. The results point to similar and high firms’ absorptive capacities, regardless of the origins of capital. However, results show distinct benefit perceptions given by contingent factors, companies’ strategies, and sectoral specificities, which may denote distinct possibilities on cumulativeness and appropriability from technology transfer. We expect that these findings may improve the planning, monitoring, evaluation, and adjustments of this demand-side policy, attracting attention to new studies on the theme.
Standards of Care in Social Work: Ethical and Risk Management Implications
Authors: Reamer Frederic G 
Published: June 2023

Abstract
Social workers are sometimes named as defendants in malpractice lawsuits. These lawsuits allege negligence, specifically that social work defendants owed a duty to the plaintiff, breached this duty, and the defendant’s actions caused harm. Plaintiffs in litigation cases typically allege that social workers violated or failed to meet prevailing standards of care in the profession. It is essential that social workers understand the legal concept of standard of care and its implications for professional practice. This article reviews the concept of standard of care; discusses the ways in which social work ethics standards, federal and state laws, national practice standards, expert witness testimony, and professional literature determine the standard of care; and presents practical steps social workers can take to comply with prevailing standards of care, protect clients, and protect themselves. The author focuses especially on complex cases where social workers may not agree on relevant standards of care.
Pediatric Complex Regional Pain Syndrome With and Without a History of Prior Physical Trauma at Onset
Authors: Sherry David D. , Mondal Antara , McGill Mackenzie , Gmuca Sabrina 
Published: June 2023

Objective:
To determine if differences exist between children with complex regional pain syndrome (CRPS) who identify an inciting physical traumatic event (Group T) versus those without such history (Group NT).

Methods:
We performed a single center, retrospective study of children diagnosed with CRPS ≤18 years old presenting between April 2008 and March 2021 and enrolled in a patient registry. Abstracted data included clinical characteristics, pain symptoms, functional disability inventory, psychological history, pain catastrophizing scale for children (PCS-C). Charts were reviewed for outcome data.

Results:
We identified 301 children with CRPS, 95 (64%) reported a prior physical trauma. There was no difference between the groups regarding age, sex, duration, pain level, function, psychological symptoms, and scores on the PCS-C. However, those in group T were more likely to have had a cast (43% vs. 23%, P<0.001). Those in group T were less likely to experience complete resolution of symptoms (64% vs. 76%, P=0.036). There were no other outcome differences between the groups.

Discussion:
We found minimal differences in children with CRPS who report a prior history of physical trauma to those who do not. Physical trauma may not play as significant a role as does immobility, such as casting. The groups mostly had similar psychological backgrounds and outcomes.
Cuticular Poroma: A Rare Poroma Variant Simulating a Malignant Neoplasm That Often Harbors YAP1::NUTM1 Fusions Similar to Their Conventional Counterparts
Authors: Kolm Isabel , Konstantinova Anastasia M. , Kutzner Heinz , Barghorn Andre , Vanecek Tomas , Mangana Joanna , Kazakov Dmitry V. 
Published: June 2023

Abstract:
Cuticular poroma is a rare variant of poroma composed of exclusively or predominantly cuticular cells, namely of large cells with ample eosinophilic cytoplasm. We report 7 cases of this rare tumor identified among 426 neoplasms diagnosed as poroma or porocarcinoma. The patients were 4 males and 3 females, ranging in age from 18 to 88 years. All presented with a solitary asymptomatic nodule. The location included knee (2 cases), shoulder, thigh, shin, lower arm, and neck (each 1). All lesions were surgically removed. No evidence of disease was observed in 5 patients with available follow-up (range 12–124 months).
Microscopically, all neoplasms were composed of variably sized, focally closed packed, or interconnecting nodules constituted mostly of cuticular cells. Small poroid cells were a focal feature in 5 tumors, whereas in the remaining 2 cases, poroid cells with conspicuous but still in minority. Five neoplasms were somewhat asymmetric, with irregular outlines. Ductal differentiation and intracytoplasmic vacuoles were seen in 6 tumors. Other features variably encountered were conspicuous intranuclear pseudoinclusions, cystic change, occasional multinucleated cells, increased mitoses, and stromal desmoplasia. Four of the 5 tumors analyzed with next-generation sequencing yielded YAP1::NUTM1 fusions. In addition, various mutations, mostly of unknown significance were identified in one neoplasm.
Application of finite element analysis in maxillofacial surgery biomechanics
Authors: Zhou Weihao , Guo Ziwei , El Akkawi Mariya Mohamad , Qi Xiangdong 
Published: June 2023

ABSTRACT
Finite element analysis method is one of the important tools in biomechanics research, which has the characteristics of high efficiency, convenience, accuracy, low resource consumption, individuation, and repeatability. At present, it is widely used in maxillofacial surgery, such as the biomechanics of normal jaw, the mechanical research of temporomandibular joint disease, and the surgical effect of jaw fracture and of orthognathic surgery. In this paper, the application of finite element analysis in maxillofacial surgery is summarized by combining the principle of finite element analysis, and the shortcomings of finite element analysis in clinical application are explained to provide suggestions for future research.
A cone-beam computed tomography study of supernumerary teeth
Authors: Guo Jing , Jumatai Sakendeke , Dai Yonggang , Sun Jingwen , Gong Zhongcheng 
Published: June 2023

ABSTRACT

Objectives:
The objective was to study the position and morphological characteristics of supernumerary teeth (ST) based on the cone beam computed tomography (CBCT) data to provide a reference for clinical diagnosis and treatment.

Materials and Methods:
CBCT imaging data and patient characteristics of 113 patients visiting our institution between January 2020 and January 2021 were collected and analyzed. The Chi square test was used to compare enumeration data between different groups, while the Student's t-test was used for measurement data.

Results:
Overall, 156 ST were found in 113 patients (82 men and 31 women). Among them, 73 patients had 1 ST, 37 had 2, and 3 had 3. The supernumeraries were maxillary and mandibular in 103 and 10 patients, respectively. A total of 136 teeth were found in the anterior area, of which 30 were in the midline region. Three teeth were in the premolar and molar regions. The teeth were mainly conical (118 teeth), followed by supplementary (24 teeth), tuberculate (10 teeth), and odontomatous (4 teeth), including 2 compound odontomas and 2 complex odontomas; 66 teeth were normally oriented, 62 were inverted, and 28 were transverse. There was a statistically significant relationship in ST between shape and arch, location and shape, and morphology and sagittal position and orientations (P < 0.05).

Conclusion:
CBCT is an essential tool for diagnosis, and it provides valuable information about the position and morphology of teeth, especially the relationship of teeth to adjacent structures objectively, stereoscopically, and comprehensively.