bluuebunny/crossref_metadata_2025_split huggingface dataset:
Anti-PD-1 therapy achieves favorable outcomes in HBV-positive non-liver cancer
Authors: Zhou Jie , Chen Guanming , Wang Jiuling , Zhou Bo , Sun Xuemin , Wang Jinsong , Tang Shu , Xing Xiangju , Hu Xiaofei , Zhao Yang , Peng Yu , Shi Wenjiong , Zhao Tingting , Wu Yuzhang , Zhong Hanbing , Hong Ni , Ruan Zhihua , Zhang Yi , Jin Wenfei 
Published: April 2023

AbstractAnti-PD-1 therapy has shown promising outcomes in the treatment of different types of cancer. It is of fundamental interest to analyze the efficacy of anti-PD-1 therapy in cancer patients infected with hepatitis B virus (HBV) since the comorbidity of HBV and cancer is widely documented. We designed a multicenter retrospective study to evaluate the efficacy of anti-PD-1 therapy on non-liver cancer patients infected with HBV. We found anti-PD-1 therapy achieved much better outcomes in HBV+ non-liver cancer patients than their HBV– counterparts. We performed single-cell RNA sequencing (scRNA-seq) on peripheral blood mononuclear cells (PBMCs) from esophageal squamous cell carcinoma (ESCC) patients. We found both cytotoxicity score of T cells and MHC score of B cells significantly increased after anti-PD-1 therapy in HBV+ ESCC patients. We also identified CX3CR1high TEFF, a subset of CD8+ TEFF, associated with better clinical outcome in HBV+ ESCC patients. Lastly, we found CD8+ TEFF from HBV+ ESCC patients showing higher fraction of Exhaustionhi T than their HBV– counterpart. In summary, anti-PD-1 therapy on HBV+ non-liver cancer patients is safe and achieves better outcomes than that on HBV– non-liver cancer patients, potentially because HBV+ patients had higher fraction of Exhaustionhi T, which made them more efficiently respond to anti-PD-1 therapy.
Correlation-driven organic 3D topological insulator with relativistic fermions
Authors: Nomoto Tetsuya , Imajo Shusaku , Akutsu Hiroki , Nakazawa Yasuhiro , Kohama Yoshimitsu 
Published: April 2023

AbstractExploring new topological phenomena and functionalities induced by strong electron correlation has been a central issue in modern condensed-matter physics. One example is a topological insulator (TI) state and its functionality driven by the Coulomb repulsion rather than a spin-orbit coupling. Here, we report a ‘correlation-driven’ TI state realized in an organic zero-gap system α-(BETS)2I3. The topological surface state and chiral anomaly are observed in temperature and field dependences of resistance, indicating a three-dimensional TI state at low temperatures. Moreover, we observe a topological phase switching between the TI state and non-equilibrium Dirac semimetal state by a dc current, which is a unique functionality of a correlation-driven TI state. Our findings demonstrate that correlation-driven TIs are promising candidates not only for practical electronic devices but also as a field for discovering new topological phenomena and phases.
Growth dynamics and amorphous-to-crystalline phase transformation in natural nacre
Authors: Otter L. M. , Eder K. , Kilburn M. R. , Yang L. , O’Reilly P. , Nowak D. B. , Cairney J. M. , Jacob D. E. 
Published: April 2023

AbstractBiominerals, such as nacreous bivalve shells, are important archives of environmental information. Most marine calcifiers form their shells from amorphous calcium carbonate, hypothesised to occur via particle attachment and stepwise crystallisation of metastable precursor phases. However, the mechanism of this transformation, including the incorporation of trace elements used for environmental reconstructions, are poorly constrained. Here, using shells of the Mediterranean mussel, we explore the formation of nacre from the meso- to the atomic scale. We use a combination of strontium pulse-chase labelling experiments in aquaculture and correlated micro- to sub-nanoscale analysis to show that nacre grows in a dynamic two-step process with extensional and space-filling growth components. Furthermore, we show that nacre crystallizes via localised dissolution and reprecipitation within nanogranules. Our findings elucidate how stepwise crystallization pathways affect trace element incorporation in natural biominerals, while preserving their intricate hierarchical ultrastructure.
Parkinson’s disease-associated ATP13A2/PARK9 functions as a lysosomal H+,K+-ATPase
Authors: Fujii Takuto , Nagamori Shushi , Wiriyasermkul Pattama , Zheng Shizhou , Yago Asaka , Shimizu Takahiro , Tabuchi Yoshiaki , Okumura Tomoyuki , Fujii Tsutomu , Takeshima Hiroshi , Sakai Hideki 
Published: April 2023

AbstractMutations in the human ATP13A2 (PARK9), a lysosomal ATPase, cause Kufor-Rakeb Syndrome, an early-onset form of Parkinson’s disease (PD). Here, we demonstrate that ATP13A2 functions as a lysosomal H+,K+-ATPase. The K+-dependent ATPase activity and the lysosomal K+-transport activity of ATP13A2 are inhibited by an inhibitor of sarco/endoplasmic reticulum Ca2+-ATPase, thapsigargin, and K+-competitive inhibitors of gastric H+,K+-ATPase, such as vonoprazan and SCH28080. Interestingly, these H+,K+-ATPase inhibitors cause lysosomal alkalinization and α-synuclein accumulation, which are pathological hallmarks of PD. Furthermore, PD-associated mutants of ATP13A2 show abnormal expression and function. Our results suggest that the H+/K+-transporting function of ATP13A2 contributes to acidification and α-synuclein degradation in lysosomes.
Glucocorticoid activation of anti-inflammatory macrophages protects against insulin resistance
Authors: Caratti Giorgio , Stifel Ulrich , Caratti Bozhena , Jamil Ali J. M. , Chung Kyoung-Jin , Kiehntopf Michael , Gräler Markus H. , Blüher Matthias , Rauch Alexander , Tuckermann Jan P. 
Published: April 2023

AbstractInsulin resistance (IR) during obesity is linked to adipose tissue macrophage (ATM)-driven inflammation of adipose tissue. Whether anti-inflammatory glucocorticoids (GCs) at physiological levels modulate IR is unclear. Here, we report that deletion of the GC receptor (GR) in myeloid cells, including macrophages in mice, aggravates obesity-related IR by enhancing adipose tissue inflammation due to decreased anti-inflammatory ATM leading to exaggerated adipose tissue lipolysis and severe hepatic steatosis. In contrast, GR deletion in Kupffer cells alone does not alter IR. Co-culture experiments show that the absence of GR in macrophages directly causes reduced phospho-AKT and glucose uptake in adipocytes, suggesting an important function of GR in ATM. GR-deficient macrophages are refractory to alternative ATM-inducing IL-4 signaling, due to reduced STAT6 chromatin loading and diminished anti-inflammatory enhancer activation. We demonstrate that GR has an important function in macrophages during obesity by limiting adipose tissue inflammation and lipolysis to promote insulin sensitivity.
Pressure-induced transition from a Mott insulator to a ferromagnetic Weyl metal in La2O3Fe2Se2
Authors: Yang Ye , Yu Fanghang , Wen Xikai , Gui Zhigang , Zhang Yuqing , Zhan Fangyang , Wang Rui , Ying Jianjun , Chen Xianhui 
Published: April 2023

AbstractThe insulator-metal transition in Mott insulators, known as the Mott transition, is usually accompanied with various novel quantum phenomena, such as unconventional superconductivity, non-Fermi liquid behavior and colossal magnetoresistance. Here, based on high-pressure electrical transport and XRD measurements, and first-principles calculations, we find that a unique pressure-induced Mott transition from an antiferromagnetic Mott insulator to a ferromagnetic Weyl metal in the iron oxychalcogenide La2O3Fe2Se2 occurs around 37 GPa without structural phase transition. Our theoretical calculations reveal that such an insulator-metal transition is mainly due to the enlarged bandwidth and diminishing of electron correlation at high pressure, fitting well with the experimental data. Moreover, the high-pressure ferromagnetic Weyl metallic phase possesses attractive electronic band structures with six pairs of Weyl points close to the Fermi level, and its topological property can be easily manipulated by the magnetic field. The emergence of Weyl fermions in La2O3Fe2Se2 at high pressure may bridge the gap between nontrivial band topology and Mott insulating states. Our findings not only realize ferromagnetic Weyl fermions associated with the Mott transition, but also suggest pressure as an effective controlling parameter to tune the emergent phenomena in correlated electron systems.
Identification of three bacterial species associated with increased appendicular lean mass: the HUNT study
Authors: Grahnemo Louise , Nethander Maria , Coward Eivind , Gabrielsen Maiken Elvestad , Sree Satya , Billod Jean-Marc , Sjögren Klara , Engstrand Lars , Dekkers Koen F. , Fall Tove , Langhammer Arnulf , Hveem Kristian , Ohlsson Claes 
Published: April 2023

AbstractAppendicular lean mass (ALM) associates with mobility and bone mineral density (BMD). While associations between gut microbiota composition and ALM have been reported, previous studies rely on relatively small sample sizes. Here, we determine the associations between prevalent gut microbes and ALM in large discovery and replication cohorts with information on relevant confounders within the population-based Norwegian HUNT cohort (n = 5196, including women and men). We show that the presence of three bacterial species – Coprococcus comes, Dorea longicatena, and Eubacterium ventriosum – are reproducibly associated with higher ALM. When combined into an anabolic species count, participants with all three anabolic species have 0.80 kg higher ALM than those without any. In an exploratory analysis, the anabolic species count is positively associated with femoral neck and total hip BMD. We conclude that the anabolic species count may be used as a marker of ALM and BMD. The therapeutic potential of these anabolic species to prevent sarcopenia and osteoporosis needs to be determined.
Strong ferromagnetism of g-C3N4 achieved by atomic manipulation
Authors: Du Lina , Gao Bo , Xu Song , Xu Qun 
Published: April 2023

AbstractTwo-dimensional (2D) metal-free ferromagnetic materials are ideal candidates to fabricate next-generation memory and logic devices, but optimization of their ferromagnetism at atomic-scale remains challenging. Theoretically, optimization of ferromagnetism could be achieved by inducing long-range magnetic sequence, which requires short-range exchange interactions. In this work, we propose a strategy to enhance the ferromagnetism of 2D graphite carbon nitride (g-C3N4), which is facilitating the short-range exchange interaction by introducing in-planar boron bridges. As expected, the ferromagnetism of g-C3N4 was significantly enhanced after the introduction of boron bridges, consistent with theoretical calculations. Overall, boosting ferromagnetism of 2D materials by introducing bridging groups is emphasized, which could be applied to manipulate the magnetism of other materials.
Design of C1-symmetric tridentate ligands for enantioselective dearomative [3 + 2] annulation of indoles with aminocyclopropanes
Authors: Wang Hai-Xia , Yang Chun , Xue Bai-Yu , Xie Ming-Sheng , Tian Yin , Peng Cheng , Guo Hai-Ming 
Published: April 2023

AbstractChiral polycyclic indolines are widely present in natural products and have become the focus of extensive synthetic efforts. Here, we show the catalytic asymmetric dearomative [3 + 2] annulation of indoles with donor-acceptor aminocyclopropanes to construct tricyclic indolines. Key to the success of the reaction is the rational design of C1-symmetric bifunctional tridentate imidazoline-pyrroloimidazolone pyridine ligand. Under 5 mol% of Ni(OTf)2-ligand complex, diverse tricyclic indolines containing cyclopentamine moieties are obtained in good chemoselectivities, high diastereoselectivities, and excellent enantioselectivities. An unusual cis-configuration ligand is superior to the trans-configuration ligand and the corresponding C2-symmetric tridentate nitrogen ligands in the annulation reaction. Mechanistic studies by control experiments and density functional theory calculations reveal a dual activation manner, where Ni(II) complex activates the aminocyclopropane via coordination with the geminal diester, and imidazolidine NH forms a H-bond with the succinimide moiety.
Slow integrin-dependent migration organizes networks of tissue-resident mast cells
Authors: Kaltenbach Lukas , Martzloff Paloma , Bambach Sarah K. , Aizarani Nadim , Mihlan Michael , Gavrilov Alina , Glaser Katharina M. , Stecher Manuel , Thünauer Roland , Thiriot Aude , Heger Klaus , Kierdorf Katrin , Wienert Stephan , von Andrian Ulrich H. , Schmidt-Supprian Marc , Nerlov Claus , Klauschen Frederick , Roers Axel , Bajénoff Marc , Grün Dominic , Lämmermann Tim 
Published: April 2023

AbstractImmune cell locomotion is associated with amoeboid migration, a flexible mode of movement, which depends on rapid cycles of actin polymerization and actomyosin contraction1. Many immune cells do not necessarily require integrins, the major family of adhesion receptors in mammals, to move productively through three-dimensional tissue spaces2,3. Instead, they can use alternative strategies to transmit their actin-driven forces to the substrate, explaining their migratory adaptation to changing external environments4–6. However, whether these generalized concepts apply to all immune cells is unclear. Here, we show that the movement of mast cells (immune cells with important roles during allergy and anaphylaxis) differs fundamentally from the widely applied paradigm of interstitial immune cell migration. We identify a crucial role for integrin-dependent adhesion in controlling mast cell movement and localization to anatomical niches rich in KIT ligand, the major mast cell growth and survival factor. Our findings show that substrate-dependent haptokinesis is an important mechanism for the tissue organization of resident immune cells.
A simulation-based comparative effectiveness analysis of policies to improve global maternal health outcomes
Authors: Ward Zachary J. , Atun Rifat , King Gary , Sequeira Dmello Brenda , Goldie Sue J. 
Published: April 2023

AbstractThe Sustainable Development Goals include a target to reduce the global maternal mortality ratio (MMR) to less than 70 maternal deaths per 100,000 live births by 2030, with no individual country exceeding 140. However, on current trends the goals are unlikely to be met. We used the empirically calibrated Global Maternal Health microsimulation model, which simulates individual women in 200 countries and territories to evaluate the impact of different interventions and strategies from 2022 to 2030. Although individual interventions yielded fairly small reductions in maternal mortality, integrated strategies were more effective. A strategy to simultaneously increase facility births, improve the availability of clinical services and quality of care at facilities, and improve linkages to care would yield a projected global MMR of 72 (95% uncertainty interval (UI) = 58–87) in 2030. A comprehensive strategy adding family planning and community-based interventions would have an even larger impact, with a projected MMR of 58 (95% UI = 46–70). Although integrated strategies consisting of multiple interventions will probably be needed to achieve substantial reductions in maternal mortality, the relative priority of different interventions varies by setting. Our regional and country-level estimates can help guide priority setting in specific contexts to accelerate improvements in maternal health.
Engineering of NEMO as calcium indicators with large dynamics and high sensitivity
Authors: Li Jia , Shang Ziwei , Chen Jia-Hui , Gu Wenjia , Yao Li , Yang Xin , Sun Xiaowen , Wang Liuqing , Wang Tianlu , Liu Siyao , Li Jiajing , Hou Tingting , Xing Dajun , Gill Donald L. , Li Jiejie , Wang Shi-Qiang , Hou Lijuan , Zhou Yubin , Tang Ai-Hui , Zhang Xiaohui , Wang Youjun 
Published: April 2023

AbstractGenetically encoded calcium indicators (GECIs) are indispensable tools for real-time monitoring of intracellular calcium signals and cellular activities in living organisms. Current GECIs face the challenge of suboptimal peak signal-to-baseline ratio (SBR) with limited resolution for reporting subtle calcium transients. We report herein the development of a suite of calcium sensors, designated NEMO, with fast kinetics and wide dynamic ranges (>100-fold). NEMO indicators report Ca2+ transients with peak SBRs around 20-fold larger than the top-of-the-range GCaMP6 series. NEMO sensors further enable the quantification of absolution calcium concentration with ratiometric or photochromic imaging. Compared with GCaMP6s, NEMOs could detect single action potentials in neurons with a peak SBR two times higher and a median peak SBR four times larger in vivo, thereby outperforming most existing state-of-the-art GECIs. Given their high sensitivity and resolution to report intracellular Ca2+ signals, NEMO sensors may find broad applications in monitoring neuronal activities and other Ca2+-modulated physiological processes in both mammals and plants.
Gapless genome assembly of Fusarium verticillioides, a filamentous fungus threatening plant and human health
Authors: Yao Gang , Chen Weikai , Sun Jie , Wang Xiangfeng , Wang Huan , Meng Tan , Zhang Lili , Guo Li 
Published: April 2023

AbstractFusarium verticillioides is a filamentous fungus that causes plant diseases and harms human health through cancer-inducing mycotoxin and life-threatening Fusariosis. Given its threat to agriculture and public health, genome assembly of this fungus is critical to our understanding of its pathobiology and developing antifungal drugs. Here, we report a gap-free genome assembly of F. verticillioides using PacBio HiFi data and high-throughput chromosome capture (Hi-C) sequencing data. The assembled 42.0 Mb sequence contains eleven gapless chromosomes capturing all centromeres and 19 of all 22 telomeres. This assembly represents a significant improvement over previous version on contiguity (contig N50: 4.3 Mb), completeness (BUSCO score: 99.0%) and correctness (QV: 88.8). A total of 15,230 protein-coding genes were predicted, 6.2% of which are newly annotated genes. In addition, we identified three-dimension chromatin structures such as TADs-like structures and chromatin loops based on Hi-C data of ultra-high coverage. This gap-free genome of F. verticillioides is an excellent resource for further panoramic understanding mechanisms of fungal genome evolution, mycotoxin production and pathogenesis on plant and human host.
Evaluation of the registry DIALYREG for the assessment of continuous renal replacement techniques in the critically ill patient
Authors: González-Fernández M. , Quílez-Trasobares N. , Barea-Mendoza J. A. , Molina-Collado Z. , Arias-Verdú D. , Barrueco-Francioni J. , Seller-Pérez G. , Herrera-Gutiérrez M. E. , Sánchez-Izquierdo Riera J. A. 
Published: April 2023

AbstractContinuous renal replacement techniques (CRRT) can induce complications and monitoring is crucial to ensure patient safety. We designed a prospective multicenter observational and descriptive study using the DIALYREG registry, an online database located on a REDCap web-based platform that allows real-time data analysis. Our main objective was to identify CRRT-related complications in our intensive care units (ICUs) and implement security measures accordingly. From January 2019 to December 2020, we included 323 patients with admission diagnoses of medical illness (54%), sepsis (24%), postoperative care (20%), and trauma (2%). CRRT indications were homeostasis (42%), oliguria (26%), fluid overload (15%), and hemodynamic optimization (13%). The median initial therapy dose was 30 ml/kg/h (IQR 25–40), and dynamic adjustment was performed in 61% of the treatments. Sets were anticoagulated with heparin (40%), citrate (38%) or no anticoagulation (22%). Citrate anticoagulation had several advantages: more frequent dynamic CRRT dose adjustment (77% vs. 58% with heparin and 56% without anticoagulation, p < 0.05), longer duration of set (median of 55 h, IQR 24–72 vs. 23 h, IQR 12–48 with heparin and 12 h, IQR 12–31 without anticoagulation, p < 0.05), less clotting of the set (26% vs. 46.7% with heparin, p < 0.05), and lower incidence of hypophosphatemia (1% citrate vs. 6% with heparin and 5% without anticoagulation). It was also safe and effective in subgroup analysis of patients with liver disease or sepsis. The main global complications were hypothermia (16%), hypophosphatemia (13%) and metabolic acidosis (10%). Weaning of the therapy was achieved through early discontinuation (56%), nocturnal therapy transition (26%) and progressive SLED (18%). 52% of the patients were discharged from the hospital, while 43% died in the ICU and 5% died during hospitalization. We can conclude that the DIALYREG registry is a feasible tool for real-time control of CRRT in our ICU.
Decision heuristics in contexts integrating action selection and execution
Authors: Dundon Neil M. , Colas Jaron T. , Garrett Neil , Babenko Viktoriya , Rizor Elizabeth , Yang Dengxian , MacNamara Máirtín , Petzold Linda , Grafton Scott T. 
Published: April 2023

AbstractHeuristics can inform human decision making in complex environments through a reduction of computational requirements (accuracy-resource trade-off) and a robustness to overparameterisation (less-is-more). However, tasks capturing the efficiency of heuristics typically ignore action proficiency in determining rewards. The requisite movement parameterisation in sensorimotor control questions whether heuristics preserve efficiency when actions are nontrivial. We developed a novel action selection-execution task requiring joint optimisation of action selection and spatio-temporal skillful execution. State-appropriate choices could be determined by a simple spatial heuristic, or by more complex planning. Computational models of action selection parsimoniously distinguished human participants who adopted the heuristic from those using a more complex planning strategy. Broader comparative analyses then revealed that participants using the heuristic showed combined decisional (selection) and skill (execution) advantages, consistent with a less-is-more framework. In addition, the skill advantage of the heuristic group was predominantly in the core spatial features that also shaped their decision policy, evidence that the dimensions of information guiding action selection might be yoked to salient features in skill learning.
Influence of reinforcement method on the crack characteristic parameters of expansive soil experimental study
Authors: Shu Liu , Yonggang Huang , Guiyao Wang 
Published: April 2023

AbstractThe expansive soil slope is mainly characterized by the decline of slope integrity caused by shallow expansive soil cracking and the destruction of internal soil structure, which seriously affects the overall stability of expansive soil slope. To study the effect of the combination of geogrid reinforcement and slope vegetation on inhibiting the development of expansive soil cracks, six groups of test models were made. The natural dry–wet cycle was simulated, and the crack image was binarized by using image processing technology. The crack characteristic parameters such as crack ratio, crack width, and crack length were extracted, and the effect of various reinforcement methods on inhibiting the development of cracks was comprehensively evaluated. The basic situation of the development of crack indexes in each group with the development of multiple dry–wet cycles was obtained, and the fluctuation changes of crack indexes in different stages were different under different reinforcement methods and dry–wet cycles. At the same time, the influence of different reinforcement methods on the crack development of expansive soil is obtained. It is considered that planting vetiver grass + geogrid backpacking has a good effect on inhibiting the crack development of expansive soil.