bluuebunny/crossref_metadata_2025_split huggingface dataset:
Bound states in the continuum in anisotropic photonic crystal slabs
Authors: Chern Ruey-Lin , Chang Jui-Chien , Yang Hsueh-Chi 
Published: August 2023

AbstractWe investigate the bound states in the continuum (BICs) in photonic crystal slabs composed of alternating anisotropic and isotropic dielectric materials. According to the orientation of optical axis plane, three different configurations are proposed for analyzing various types of BICs, associated with extremely large quality factors and vanishing spectral linewidths. In particular, symmetry-protected (SP) BICs exist at the Brillouin zone center for zero rotation angle of the optical axis, which exhibit antisymmetric field patterns that are decoupled from the symmetric radiating fields. Accidental BICs and Friedrich-Wintgen (FW) BICs also occur at the Brillouin zone center for particular rotation angles of the optical axis. The former emerge on isolated bands with quasi-symmetric or quasi-antisymmetric field patterns, while the latter appear near the avoided crossing between two dispersion bands. At off the Brillouin zone center, SP BICs do not exist while accidental BICs and FW BICs appear at particular optical axis rotation angles, with similar features but somewhat more asymmetric field patterns than those at the Brillouin zone center.
Peptide nucleic acid-zirconium coordination nanoparticles
Authors: Öztürk Özgür , Lessl Anna-Lina , Höhn Miriam , Wuttke Stefan , Nielsen Peter E. , Wagner Ernst , Lächelt Ulrich 
Published: August 2023

AbstractIdeal drug carriers feature a high loading capacity to minimize the exposure of patients with excessive, inactive carrier materials. The highest imaginable loading capacity could be achieved by nanocarriers, which are assembled from the therapeutic cargo molecules themselves. Here, we describe peptide nucleic acid (PNA)-based zirconium (Zr) coordination nanoparticles which exhibit very high PNA loading of $$>\,94\%$$

>

94
%

w/w. This metal-organic hybrid nanomaterial class extends the enormous compound space of coordination polymers towards bioactive oligonucleotide linkers. The architecture of single- or double-stranded PNAs was systematically varied to identify design criteria for the coordination driven self-assembly with Zr(IV) nodes at room temperature. Aromatic carboxylic acid functions, serving as Lewis bases, and a two-step synthesis process with preformation of $$Zr_{6} O_{4} (OH)_{4}$$

Z

r
6

O
4

(
O
H
)

4

turned out to be decisive for successful nanoparticle assembly. Confocal laser scanning microscopy confirmed that the PNA-Zr nanoparticles are readily internalized by cells. PNA-Zr nanoparticles, coated with a cationic lipopeptide, successfully delivered an antisense PNA sequence for splicing correction of the $$\beta$$
β
-globin intron mutation IVS2-705 into a functional reporter cell line and mediated splice-switching via interaction with the endogenous mRNA splicing machinery. The presented PNA-Zr nanoparticles represent a bioactive platform with high design flexibility and extraordinary PNA loading capacity, where the nucleic acid constitutes an integral part of the material, instead of being loaded into passive delivery systems.
Green “turn-off” luminescent nanosensors for the sensitive determination of desperately fluorescent antibacterial antiviral agent and its metabolite in various matrices
Authors: Elbardisy Hadil M. , Elnaggar Mai M. , Belal Tarek S. , Ragab Mahmoud A. , El-Yazbi Amira F. 
Published: August 2023

AbstractNitazoxanide (NTX) is an antimicrobial drug that was used for the treatment of various protozoa. However, during the coronavirus pandemic, NTX has been redirected for the treatment of such virus that primarily infect the respiratory tract system. NTX is now used as a broad-spectrum antiviral agent. In this study, a highly sensitive and green spectrofluorometric method was developed to detect NTX in various dosage forms and its metabolite, tizoxanide (TX), in human plasma samples using nitrogen and sulfur co-doped carbon quantum dots nanosensors (C-dots). A simple and eco-friendly hydrothermal method was used to synthetize water soluble C-dots from citric acid and l-cysteine. After excitation at 345 nm, the luminescence intensity was measured at 416 nm. Quenching of C-dots luminescence occurred upon the addition of NTX and was proportional to NTX concentration. Assessment of the quenching mechanism was performed to prove that inner filter effect is the underlying molecular mechanism of NTX quenching accomplished. After optimizing all experimental parameters, the analytical procedure was evaluated and validated using the ICH guidelines. The method linearity, detection and quantification limits of NTX were 15 × 10–3–15.00 µg/mL, 56.00 × 10–4 and 15 × 10–3 µg/mL, respectively. The proposed method was applied for the determination of NTX in its commercial pharmaceutical products; Nanazoxid® oral suspension and tablets. The obtained % recovery, relative standard deviation and % relative error were satisfactory. Comparison with other reported spectrofluorimetric methods revealed the superior sensitivity of the proposed method. Such high sensitivity permitted the selective determination of TX, the main metabolite of NTX, in human plasma samples making this study the first spectrofluorimetric method in literature that determine TX in human plasma samples. Moreover, the method greenness was assessed using both Eco-Scale and AGREE approaches to prove the superiority of the proposed method greenness over other previously published spectrofluorimetric methods for the analysis of NTX and its metabolite, TX, in various dosage forms and in human plasma samples.
Evidence of natural selection in the mitochondrial-derived peptides humanin and SHLP6
Authors: Gruschus James M. , Morris Daniel L. , Tjandra Nico 
Published: August 2023

AbstractMitochondrial-derived peptides are encoded by mitochondrial DNA but have biological activity outside mitochondria. Eight of these are encoded by sequences within the mitochondrial 12S and 16S ribosomal genes: humanin, MOTS-c, and the six SHLP peptides, SHLP1-SHLP6. These peptides have various effects in cell culture and animal models, affecting neuroprotection, insulin sensitivity, and apoptosis, and some are secreted, potentially having extracellular signaling roles. However, except for humanin, their importance in normal cell function is unknown. To gauge their importance, their coding sequences in vertebrates have been analyzed for synonymous codon bias. Because they lie in RNA genes, such bias should only occur if their amino acids have been conserved to maintain biological function. Humanin and SHLP6 show strong synonymous codon bias and sequence conservation. In contrast, SHLP1, SHLP2, SHLP3, and SHLP5 show no significant bias and are poorly conserved. MOTS-c and SHLP4 also lack significant bias, but contain highly conserved N-terminal regions, and their biological importance cannot be ruled out. An additional potential mitochondrial-derived peptide sequence was discovered preceding SHLP2, named SHLP2b, which also contains a highly conserved N-terminal region with synonymous codon bias.
Clinical and imaging characteristics, outcomes and prognostic factors of intraocular foreign bodies extracted by vitrectomy
Authors: Liu Xin , Bai Qinzhu , Song Xiande 
Published: August 2023

AbstractTo investigate the clinical and computer tomography (CT) features and visual prognostic factors of pars plana vitrectomy (PPV) for management of retained posterior segment intraocular foreign body (IOFB). Medical records of 96 patients with IOFB removed by PPV between July 2017 and June 2021 were retrieved. The medical records, including demographic data, initial and final best corrected visual acuity (BCVA) using standard Snellen chart, characteristics of IOFB, CT findings, and surgical details, were reviewed. Outcome was evaluated according to the final BCVA and prognostic factors were obtained. The mean age was 42.31 ± 12.05 years (range 13–71 years) with 94 males (97.9%) and two females (2.1%). CT was sensitive of IOFB in 93.75% (90 eyes) and the locations were consistent with that found during PPV: 20 foreign bodies were located in vitreous, 6 near ciliary body, and 70 on or in retina. Mean diameter of IOFB removed by PPV is 3.52 mm ± 3.01 mm (range 1–22; median 3), and mean area is 6.29 ± 6.48 mm2 (range 0.5–40; median 3), which was statistically associated with the initial VA < 0.1 and endophthalmitis. Endophthalmitis was found in 24 (25.0%) eyes and large wound together with scleral entry site might be related to the endophthalmitis. Visual outcome < 0.1 was associated with relative afferent pupillary defect, initial VA < 0.1, and presence of endophthalmitis. Initial VA ≥ 0.1 was independent predictive factor for a better final BCVA. Relative afferent pupillary defect, initial BCVA < 0.1, and presence of endophthalmitis are poor visual prognostic factors.
Identification of donor Bacteroides vulgatus genes encoding proteins that correlate with early colonization following fecal transplant of patients with recurrent Clostridium difficile
Authors: Koo Hyunmin , Morrow Casey D. 
Published: August 2023

AbstractDue to suppressive antibiotics, patients with recurrent Clostridium difficile have gut microbial communities that are devoid of most commensal microbes. Studies have shown that most of the failures using fecal microbe transplantation (FMT) for recurrent C. difficile occur during the first 4 weeks following transplantation. To identify features of donor Bacteroides vulgatus that lead to early colonization, we used two data sets that collected fecal samples from recipients at early times points post FMT. The first analysis used the shotgun metagenomic DNA sequencing data set from Aggarwala et al. consisting of 7 FMT donors and 13 patients with recurrent C. difficile with fecal samples taken as early as 24 h post FMT. We identified 2 FMT donors in which colonization of recipients by donor B. vulgatus was detected as early as 24 h post FMT. We examined a second data set from Hourigan et al. that collected fecal samples from C. difficile infected children and identified 1 of 3 FMT that also had early colonization of the donor B. vulgatus. We found 19 genes out of 4911 encoding proteins were unique to the 3 donors that had early colonization. A gene encoding a putative chitobiase was identified that was in a gene complex that had been previously identified to enhance colonization in mice. A gene encoding a unique fimbrillin (i.e., pili) family protein and 17 genes encoding hypothetical proteins were also specific for early colonizing donors. Most of the genes encoding hypothetical proteins had neighboring genes that encoded proteins involved in mobilization or transposition. Finally, analysis of 42 paired fecal samples from the human microbiome project (HMP) found no individuals had all 19 genes while 2 individuals had none of the 19 genes. Based on the results from our study, consideration should be given to the screening of FMT donors for these B. vulgatus genes found to enhance early colonization that would be of benefit to promote colonization following FMT.
Constant false alarm rate detection of pipeline leakage based on acoustic sensors
Authors: An Guorui , Huang Zuheng , Li Yanbing 
Published: August 2023

AbstractDuring the transportation of oil and gas pipelines, there are many potential factors that can lead to pipeline leakage with serious consequences, making automatic and real-time pipeline leakage detection urgent. In response to the inconvenience of manual detection, constant false alarm rate (CFAR) detection technique in radar target detection theory is introduced for pipeline leakage detection based on acoustic signals. In this paper, an automatic pipeline leakage detection algorithm based on an improved CFAR detector is proposed. The improved CFAR detection is executed after pre-processing the acoustic signals so as to adaptively set the detection threshold to achieve the purpose of automatic detection of pipeline leakage incidents. A simulated leakage test of a real pipeline is used for validation, and the proposed method achieves detection accuracies of 84.6%, 97.7%, and 98% for different leakage diameter settings, i.e., 5 mm, 7 mm, and 10 mm leak hole diameters, respectively, with an overall accuracy of 94.1%, while the false alarm rates are 3.3%, 0.7%, and 0, respectively, as well as an overall of 1.2%. The results of experimental data based on real scenarios demonstrate the effectiveness of the proposed method.
Diverse effects of prostacyclin on angiogenesis-related processes in the porcine endometrium
Authors: Szymanska Magdalena , Blitek Agnieszka 
Published: August 2023

AbstractAngiogenesis is important for endometrial remodeling in mature females. The endometrium synthesizes high amounts of prostacyclin (PGI2) but the role of PGI2 in angiogenesis-related events in this tissue was not fully described. In the present study, porcine endometrial endothelial (pEETH) cells and/or a swine umbilical vein endothelial cell line (G1410 cells) were used to determine the regulation of PGI2 synthesis and PGI2 receptor (PTGIR) expression by cytokines and to evaluate the effect of PGI2 on pro-angiogenic gene expression, intracellular signaling activation, cell proliferation and migration, cell cycle distribution, and capillary-like structure formation. We found that IL1β, IFNγ, and/or TNFα increased PGI2 secretion and PTGIR expression in pEETH cells. Iloprost (a PGI2 analogue) acting through PTGIR enhanced the transcript abundance of KDR, FGFR2, and ANGPT2 and increased proliferation of pEETH cells. This latter was mediated by PI3K and mTOR activation. In support, transfection of G1410 cells with siRNA targeting PGI2 synthase decreased pro-angiogenic gene expression and cell proliferation. Furthermore, iloprost accelerated the gap closure and promoted cell cycle progression. Intriguingly, the formation of capillary-like structures was inhibited but not completely blocked by iloprost. These findings point to a complex pleiotropic role of PGI2 in angiogenesis-related events in the porcine uterus.
Importance of residue 248 in Escherichia coli RNase P RNA mediated cleavage
Authors: Mao Guanzhong , Srivastava Abhishek S. , Wu Shiying , Kosek David , Kirsebom Leif A. 
Published: August 2023

AbstracttRNA genes are transcribed as precursors and RNase P generates the matured 5' end of tRNAs. It has been suggested that residue − 1 (the residue immediately 5ʹ of the scissile bond) in the pre-tRNA interacts with the well-conserved bacterial RNase P RNA (RPR) residue A248 (Escherichia coli numbering). The way A248 interacts with residue − 1 is not clear. To gain insight into the role of A248, we analyzed cleavage as a function of A248 substitutions and N−1 nucleobase identity by using pre-tRNA and three model substrates. Our findings are consistent with a model where the structural topology of the active site varies and depends on the identity of the nucleobases at, and in proximity to, the cleavage site and their potential to interact. This leads to positioning of Mg2+ that activates the water that acts as the nucleophile resulting in efficient and correct cleavage. We propose that in addition to be involved in anchoring the substrate the role of A248 is to exclude bulk water from access to the amino acid acceptor stem, thereby preventing non-specific hydrolysis of the pre-tRNA. Finally, base stacking is discussed as a way to protect functionally important base-pairing interactions from non-specific hydrolysis, thereby ensuring high fidelity during RNA processing and the decoding of mRNA.
Early transcriptomic host response signatures in the serum of dengue patients provides insights into clinical pathogenesis and disease severity
Authors: Yadav Aanchal , Shamim Uzma , Ravi Varsha , Devi Priti , Kumari Pallawi , Maurya Ranjeet , Das Poonam , Somani Madhuri , Budhiraja Sandeep , Tarai Bansidhar , Pandey Rajesh 
Published: August 2023

AbstractDengue virus (DENV), known to cause viral infection, belongs to the family Flaviviridae, having four serotypes (DENV1-4) that spreads by the bite of the Aedes aegypti mosquito. India has been suffering from dengue outbreaks annually with widespread epidemics by prevalence of all the four DENV serotypes. The diverse spectrum of clinical manifestations in dengue infection, mild to severe forms, makes the need of timely diagnosis and prompt treatment an essence. The identification of a dengue host response signature in serum can increase the understanding of dengue pathogenesis since most dengue NS1 Ag tests have been developed and evaluated in serum samples. Here, to understand the same, we undertook a dual RNA-sequencing (RNA-Seq) based approach from the serum samples of dengue-infected patients. The results thus yield the early transcriptional signatures that discriminated the high viral reads patients from patients who had low dengue viral reads. We identified a significant upregulation of two sets of genes, key antiviral (IFIT3, RSAD2, SAT1) and vascular dysfunction (TNFS10, CXCL8) related genes in the high viral reads group. Deeper delving of this gene profile revealed a unique two-way response, where the antiviral genes can mediate the disease course to mild, contrarily the increased expression of the other gene set might act as pointers of severe disease course. Further, we explored the hematologic parameters from the complete blood count (CBC), which suggests that lymphocytes (low) and neutrophils (high) might serve as an early predictor of prognosis in dengue infection. Collectively, our findings give insights into the foundation for further investigation of the early host response using the RNA isolated from dengue patients’ serum samples and opens the door for careful monitoring of the early clinical and transcriptome profiles for management of the dengue patients.
Compact high-efficiency energy harvesting positive and negative DC supplies voltage for battery-less CMOS receiver
Authors: Mansour Marwa , Mansour Islam 
Published: August 2023

AbstractIn this paper, novel compact high-efficiency multi-band rectifiers that supply positive and negative output voltages are demonstrated for energy harvesting applications. The proposed voltage doubler circuits are used as real DC voltage supplies of radio frequency mm-wave CMOS receivers. Operating multi-band rectifiers have a complicated structure that required more resonance networks to force the rectifier to work in multi-band. Novel series and parallel resonance networks are implemented to force the rectifier to operate in dual-band at frequencies of 850 and 1400 MHz. The proposed resonance network eliminates the Schottky diode impedance variation as the input power or frequency changes and supports the impedance matching and minimizes the insertion loss. A novel high-quality sine-shape micro-strip inductor that obtains a quality factor above 65 over the frequency band from 200 to 1400 MHz and inductance equal to 14 ± 2 nH is designed to improve efficiency and enhance performance at low power levels. The first suggested RF voltage doubler rectifier with series resonance feedback between the input and cathode of the diode and parallel resonance operates at two frequency bands of 850 and 1400 MHz and obtains a peak conversion efficiency of 59%, a saturated output DC voltage is 2.5 V, and the conversion efficiency is 40% at RF-input-power of − 10 dBm. This voltage doubler achieves the required DC supply parameter (1.1 V and 450 uA) for biasing the mm-wave receiver at an RF input power of 0 dBm. Otherwise, the second suggested negative voltage rectifier has a maximum simulated conversion efficiency of 65%, saturated negative DC-voltage is − 3.5 V, and the conversion efficiency is 45% at an RF input power of − 10 dBm. The negative voltage rectifier obtains DC supply parameters (− 0.5 V and no current condition used for a gate bias) at − 10 dBm input power.
Visualization of nanoscale magnetic domain states in the asteroid Ryugu
Authors: Kimura Yuki , Kato Takeharu , Tanigaki Toshiaki , Akashi Tetsuya , Kasai Hiroto , Anada Satoshi , Yoshida Ryuji , Yamamoto Kazuo , Nakamura Tomoki , Sato Masahiko , Amano Kana , Kikuiri Mizuha , Morita Tomoyo , Kagawa Eiichi , Yada Toru , Nishimura Masahiro , Nakato Aiko , Miyazaki Akiko , Yogata Kasumi , Abe Masanao , Okada Tatsuaki , Usui Tomohiro , Yoshikawa Makoto , Saiki Takanao , Tanaka Satoshi , Terui Fuyuto , Nakazawa Satoru , Yurimoto Hisayoshi , Noguchi Takaaki , Okazaki Ryuji , Yabuta Hikaru , Naraoka Hiroshi , Sakamoto Kanako , Watanabe Sei-ichiro , Tsuda Yuichi , Tachibana Shogo 
Published: August 2023

AbstractIn the samples collected from the asteroid Ryugu, magnetite displays natural remanent magnetization due to nebular magnetic field, whereas contemporaneously grown iron sulfide does not display stable remanent magnetization. To clarify this counterintuitive feature, we observed their nanoscale magnetic domain structures using electron holography and found that framboidal magnetites have an external magnetic field of 300 A m−1, similar to the bulk value, and its magnetic stability was enhanced by interactions with neighboring magnetites, permitting a disk magnetic field to be recorded. Micrometer-sized pyrrhotite showed a multidomain magnetic structure that was unable to retain natural remanent magnetization over a long time due to short relaxation time of magnetic-domain-wall movement, whereas submicron-sized sulfides formed a nonmagnetic phase. These results show that both magnetite and sulfide could have formed simultaneously during the aqueous alteration in the parent body of the asteroid Ryugu.
Layered MoS2: effective and environment-friendly nanomaterial for photocatalytic degradation of methylene blue
Authors: Kisała Joanna , Wojnarowska-Nowak Renata , Bobitski Yaroslav 
Published: August 2023

AbstractPhotocatalytic degradation is a promising method for removing persistent organic pollutants from water because of its low cost (see solar-driven photocatalysis), high mineralisation of pollutants, and low environmental impact. Photocatalysts based on transition metal dichalcogenides (TMDs) have recently attracting high scientific interest due to their unique electrical, mechanical, and optical properties. A MoS2 photocatalyst of the layered structure was managed to photodegrade methylene blue (MB) under visible light irradiation. The catalyst was thoroughly characterised using SEM, AFM, powder XRD, UV–Vis, Raman, and XPS measurements. The photocatalytic degradation of the MB solution was conducted under the following conditions: (i) reductive and (ii) oxidative. The impact of optical and electronic properties, and the MoS2-MB interaction on photocatalytic activity, was discussed. The apparent rate constants (kapp) of degradation were 3.7 × 10–3; 7.7 × 10–3; 81.7 × 10–3 min−1 for photolysis, oxidative photocatalysis, and reductive photocatalysis. Comparison of the degradation efficiency of MB in reductive and oxidative processes indicates the important role of the reaction with the surface electron. In the oxidation process, oxygen reacts with an electron to form a superoxide anion radical involved in further transformations of the dye, whereas, in the reduction process, the addition of an electron destabilises the chromophore ring and leads to its rupture.