bluuebunny/crossref_metadata_2025_split huggingface dataset:
Micromechanical Contrast of Ordos Basin Sandstone‐Mudstone Interbedded Layered Rocks
Authors: Yang Ruiyue , Cong Richao , Gong Yanjin , Pang Zhaoyu , Huang Zhongwei , Li Gensheng 
Published: September 2023

AbstractLayered rocks are heterogeneous media composed of multiscale minerals with contrasting geomechanical properties. It remains unclear how the mechanical responses of constituent minerals among different adjacent layers vary in a microscale. Based on the grid nanoindentation tests assisted by high‐resolution scanning electron microscopy and energy‐dispersive spectroscopy techniques, we quantified the mechanical responses of various minerals in an interbedded sandstone‐mudstone core sample and provided visual mineralogies and indentation patterns of different adjacent layers. Results show that the Young's modulus, hardness, and elasticity index of quartz and dolomite decrease, whereas their fracture toughness and plastic work ratio increase from the sandstone layer to the mudstone layer. Quartz displays elastic‐dominated deformations in the sandstone layer whereas transforms into medium‐plastic deformations in the mudstone layer. The mean values of Young's modulus, hardness, and elasticity index of quartz in the sandstone layer are 1.28, 2.00, and 1.56 times higher than that in the mudstone layer, respectively. Dolomite and phyllosilicate minerals show prominently plastic‐dominated deformations in each layer. When an indenter encounters multiple minerals simultaneously, the mechanical responses are determined by the softer phases and irregular indent impressions are generated. Shear and radical cracks are prone to occur in the elastic‐dominated minerals, while chipping damage is induced in the plastic‐dominated minerals. This work provides new insights and fundamental understandings in geomechanical properties contrasts in multilayered rocks, and can facilitate the geomechanical modeling and upscaling schemes in multilayered formations.
SE‐Dome II Ice Core Dating With Half‐Year Precision: Increasing Melting Events From 1799 to 2020 in Southeastern Greenland
Authors: Kawakami Kaoru , Iizuka Yoshinori , Sasage Mahiro , Matsumoto Mai , Saito Takeshi , Hori Akira , Ishino Sakiko , Fujita Shuji , Fujita Koji , Takasugi Keita , Hatakeyama Takumi , Hamamoto Saaya , Watari Akihisa , Esashi Nao , Otsuka Miu , Uemura Ryu , Horiuchi Kazuho , Minowa Masahiro , Hattori Shohei , Aoki Teruo , Hirabayashi Motohiro , Kawamura Kenji , Matoba Sumito 
Published: September 2023

AbstractArctic warming has accelerated surface melting even in the highland areas of the Greenland ice sheet (GrIS). Understanding the relationship between climate and surface melting is essential for improving the estimates of ice‐sheet mass loss due to warming. Here we analyze a 250 m‐long ice core from the southeastern dome of GrIS (SE‐Dome site; 67°19′17″ N, 36°47′03″ W, 3,161 m a.s.l.), where the annual mean temperature is −20.9°C and the accumulation rate is high and there is a large discrepancy among climate models regarding snow accumulation estimates. A time scale was established for 1799–2020 with a half‐year uncertainty using annual counting of H2O2 concentration and five time horizons determined by electrical conductivity, melt events, and tritium concentration. The annual accumulation rate from the ice core shows no significant trend over 221 years and has an average of 1.04 ± 0.20 m w.e. year−1. In contrast, the frequency and thickness of refrozen melt layer (ML) have increased over 221 years, and are synchronized with temperature changes in the Arctic. The thickness of MLs correlates positively with the time‐integrated summer temperature anomaly using a reanalysis of air temperature. The in‐situ accumulation records in the southeastern GrIS provide an important basis for correcting reanalysis data such as ERA5, which in turn are valuable for improving regional climate models.
Combined FOLFOX4 with all-trans retinoic acid versus FOLFOX4 with placebo in treatment of advanced hepatocellular carcinoma with extrahepatic metastasis: a randomized, double-blind comparative study
Authors: Sun Juxian , Mao Feifei , Liu Chang , Zhang Fan , Jiang Dafeng , Guo Weixing , Huo Lei , Zhou Liping , Lau Wan Yee , Shi Jie , Cheng Shuqun 
Published: September 2023

AbstractThe majority of hepatocellular carcinoma (HCC) cases are diagnosed at an advanced stage. Currently, there are only a few therapeutic methods available for patients with advanced HCC and extrahepatic metastasis (EHM). Systemic chemotherapy, such as FOLFOX4 (infusions of fluorouracil, leucovorin, and oxaliplatin), has been reported for treating advanced HCC with EHM, but its effectiveness is very poor. In this randomized, double-blind, placebo-controlled study, we aimed to assess the efficacy and safety of FOLFOX4 with all-trans-retinoic acid (ATRA) as a palliative treatment for HCC patients with EHM, compared to FOLFOX4 with a placebo. The primary endpoint was overall survival (OS), and subsequently, an exploratory model was developed based on bioinformatics to predict the efficacy of FOLFOX4-ATRA treatment. A total of 108 patients were randomly assigned in a 1:1 ratio to receive either FOLFOX4-ATRA or FOLFOX4-placebo. The intention-to-treat (ITT) population showed a median OS of 16.2 months for the FOLFOX4-ATRA group, compared with 10.7 months for the FOLFOX4-placebo group (HR 0.56, 95% CI 0.33–0.93; p = 0.025). The median progression-free survival (PFS) was 7.1 months for the FOLFOX4-ATRA group and 4.2 months for the FOLFOX4-placebo group (HR 0.62, 95% CI 0.41–0.94; p = 0.024). A panel of proteins with unique upregulation during complete response (CR) (SOD3, TTR, SSC5D, GP5, IGKV1D-33) and partial response (PR) (TGFB1, GSS, IGHV5-10-1) effectively predicted CR and PR in patients treated with FOLFOX4-ATRA, as compared to FOLFOX4-placebo. The results suggest that FOLFOX4-ATRA is a safe and effective treatment for patients with advanced HCC and EHM in eastern China.
Development and validation of a multivariable model for prediction of malignant transformation and recurrence of oral epithelial dysplasia
Authors: Mahmood Hanya , Shephard Adam , Hankinson Paul , Bradburn Mike , Araujo Anna Luiza Damaceno , Santos-Silva Alan Roger , Lopes Marcio Ajudarte , Vargas Pablo Agustin , McCombe Kris D. , Craig Stephanie G. , James Jacqueline , Brooks Jill , Nankivell Paul , Mehanna Hisham , Rajpoot Nasir , Khurram Syed Ali 
Published: September 2023

Abstract
Background
Oral epithelial dysplasia (OED) is the precursor to oral squamous cell carcinoma which is amongst the top ten cancers worldwide. Prognostic significance of conventional histological features in OED is not well established. Many additional histological abnormalities are seen in OED, but are insufficiently investigated, and have not been correlated to clinical outcomes.

Methods
A digital quantitative analysis of epithelial cellularity, nuclear geometry, cytoplasm staining intensity and epithelial architecture/thickness is conducted on 75 OED whole-slide images (252 regions of interest) with feature-specific comparisons between grades and against non-dysplastic/control cases. Multivariable models were developed to evaluate prediction of OED recurrence and malignant transformation. The best performing models were externally validated on unseen cases pooled from four different centres (n = 121), of which 32% progressed to cancer, with an average transformation time of 45 months.

Results
Grade-based differences were seen for cytoplasmic eosin, nuclear eccentricity, and circularity in basal epithelial cells of OED (p < 0.05). Nucleus circularity was associated with OED recurrence (p = 0.018) and epithelial perimeter associated with malignant transformation (p = 0.03). The developed model demonstrated superior predictive potential for malignant transformation (AUROC 0.77) and OED recurrence (AUROC 0.74) as compared with conventional WHO grading (AUROC 0.68 and 0.71, respectively). External validation supported the prognostic strength of this model.

Conclusions
This study supports a novel prognostic model which outperforms existing grading systems. Further studies are warranted to evaluate its significance for OED prognostication.
Circulating biomarkers at diagnosis correlate with distant metastases of early luminal-like breast cancer
Authors: Lambrechts Yentl , Garg Abhishek D. , Floris Giuseppe , Punie Kevin , Neven Patrick , Nevelsteen Ines , Govaerts Jannes , Richard François , Laenen Annouschka , Desmedt Christine , Wildiers Hans , Hatse Sigrid 
Published: September 2023

AbstractThere is an urgent need for new and better biomarker modalities to estimate the risk of recurrence within the luminal-like breast cancer (BC) population. Molecular diagnostic tests used in the clinic lack accuracy in identifying patients with early luminal BC who are likely to develop metastases. This study provides proof of concept that various liquid biopsy read-outs could serve as valuable candidates to build a multi-modal biomarker model distinguishing, already at diagnosis, between early metastasizing and non-metastasizing patients. All these blood biomarkers (chemokines, microRNAs, leukemia inhibitory factor, osteopontin, and serum-induced functional myeloid signaling responses) can be measured in baseline plasma/serum samples and could be added to the existing prognostic factors to improve risk stratification and more patient-tailored treatment in early luminal BC.
Resonant X-ray excitation of the nuclear clock isomer 45Sc
Authors: Shvyd’ko Yuri , Röhlsberger Ralf , Kocharovskaya Olga , Evers Jörg , Geloni Gianluca Aldo , Liu Peifan , Shu Deming , Miceli Antonino , Stone Brandon , Hippler Willi , Marx-Glowna Berit , Uschmann Ingo , Loetzsch Robert , Leupold Olaf , Wille Hans-Christian , Sergeev Ilya , Gerharz Miriam , Zhang Xiwen , Grech Christian , Guetg Marc , Kocharyan Vitali , Kujala Naresh , Liu Shan , Qin Weilun , Zozulya Alexey , Hallmann Jörg , Boesenberg Ulrike , Jo Wonhyuk , Möller Johannes , Rodriguez-Fernandez Angel , Youssef Mohamed , Madsen Anders , Kolodziej Tomasz 
Published: September 2023

AbstractResonant oscillators with stable frequencies and large quality factors help us to keep track of time with high precision. Examples range from quartz crystal oscillators in wristwatches to atomic oscillators in atomic clocks, which are, at present, our most precise time measurement devices1. The search for more stable and convenient reference oscillators is continuing2–6. Nuclear oscillators are better than atomic oscillators because of their naturally higher quality factors and higher resilience against external perturbations7–9. One of the most promising cases is an ultra-narrow nuclear resonance transition in 45Sc between the ground state and the 12.4-keV isomeric state with a long lifetime of 0.47 s (ref. 10). The scientific potential of 45Sc was realized long ago, but applications require 45Sc resonant excitation, which in turn requires accelerator-driven, high-brightness X-ray sources11 that have become available only recently. Here we report on resonant X-ray excitation of the 45Sc isomeric state by irradiation of Sc-metal foil with 12.4-keV photon pulses from a state-of-the-art X-ray free-electron laser and subsequent detection of nuclear decay products. Simultaneously, the transition energy was determined as $${\mathrm{12,389.59}}_{+0.12\left({\rm{syst}}\right)}^{\pm 0.15\left({\rm{stat}}\right)}\,{\rm{eV}}$$

12,389.59

+
0.12

syst

±
0.15

stat

eV

with an uncertainty that is two orders of magnitude smaller than the previously known values. These advancements enable the application of this isomer in extreme metrology, nuclear clock technology, ultra-high-precision spectroscopy and similar applications.
The geography of climate and the global patterns of species diversity
Authors: Coelho Marco Túlio P. , Barreto Elisa , Rangel Thiago F. , Diniz-Filho José Alexandre F. , Wüest Rafael O. , Bach Wilhelmine , Skeels Alexander , McFadden Ian R. , Roberts David W. , Pellissier Loïc , Zimmermann Niklaus E. , Graham Catherine H. 
Published: September 2023

AbstractClimate’s effect on global biodiversity is typically viewed through the lens of temperature, humidity and resulting ecosystem productivity1–6. However, it is not known whether biodiversity depends solely on these climate conditions, or whether the size and fragmentation of these climates are also crucial. Here we shift the common perspective in global biodiversity studies, transitioning from geographic space to a climate-defined multidimensional space. Our findings suggest that larger and more isolated climate conditions tend to harbour higher diversity and species turnover among terrestrial tetrapods, encompassing more than 30,000 species. By considering both the characteristics of climate itself and its geographic attributes, we can explain almost 90% of the variation in global species richness. Half of the explanatory power (45%) may be attributed either to climate itself or to the geography of climate, suggesting a nuanced interplay between them. Our work evolves the conventional idea that larger climate regions, such as the tropics, host more species primarily because of their size7,8. Instead, we underscore the integral roles of both the geographic extent and degree of isolation of climates. This refined understanding presents a more intricate picture of biodiversity distribution, which can guide our approach to biodiversity conservation in an ever-changing world.
Inactivation of the Kv2.1 channel through electromechanical coupling
Authors: Fernández-Mariño Ana I. , Tan Xiao-Feng , Bae Chanhyung , Huffer Kate , Jiang Jiansen , Swartz Kenton J. 
Published: September 2023

AbstractThe Kv2.1 voltage-activated potassium (Kv) channel is a prominent delayed-rectifier Kv channel in the mammalian central nervous system, where its mechanisms of activation and inactivation are critical for regulating intrinsic neuronal excitability1,2. Here we present structures of the Kv2.1 channel in a lipid environment using cryo-electron microscopy to provide a framework for exploring its functional mechanisms and how mutations causing epileptic encephalopathies3–7 alter channel activity. By studying a series of disease-causing mutations, we identified one that illuminates a hydrophobic coupling nexus near the internal end of the pore that is critical for inactivation. Both functional and structural studies reveal that inactivation in Kv2.1 results from dynamic alterations in electromechanical coupling to reposition pore-lining S6 helices and close the internal pore. Consideration of these findings along with available structures for other Kv channels, as well as voltage-activated sodium and calcium channels, suggests that related mechanisms of inactivation are conserved in voltage-activated cation channels and likely to be engaged by widely used therapeutics to achieve state-dependent regulation of channel activity.
piRNA processing by a trimeric Schlafen-domain nuclease
Authors: Podvalnaya Nadezda , Bronkhorst Alfred W. , Lichtenberger Raffael , Hellmann Svenja , Nischwitz Emily , Falk Torben , Karaulanov Emil , Butter Falk , Falk Sebastian , Ketting René F. 
Published: September 2023

AbstractTransposable elements are genomic parasites that expand within and spread between genomes1. PIWI proteins control transposon activity, notably in the germline2,3. These proteins recognize their targets through small RNA co-factors named PIWI-interacting RNAs (piRNAs), making piRNA biogenesis a key specificity-determining step in this crucial genome immunity system. Although the processing of piRNA precursors is an essential step in this process, many of the molecular details remain unclear. Here, we identify an endoribonuclease, precursor of 21U RNA 5′-end cleavage holoenzyme (PUCH), that initiates piRNA processing in the nematode Caenorhabditis elegans. Genetic and biochemical studies show that PUCH, a trimer of Schlafen-like-domain proteins (SLFL proteins), executes 5′-end piRNA precursor cleavage. PUCH-mediated processing strictly requires a 7-methyl-G cap (m7G-cap) and a uracil at position three. We also demonstrate how PUCH interacts with PETISCO, a complex that binds to piRNA precursors4, and that this interaction enhances piRNA production in vivo. The identification of PUCH concludes the search for the 5′-end piRNA biogenesis factor in C. elegans and uncovers a type of RNA endonuclease formed by three SLFL proteins. Mammalian Schlafen (SLFN) genes have been associated with immunity5, exposing a molecular link between immune responses in mammals and deeply conserved RNA-based mechanisms that control transposable elements.
Proteome census upon nutrient stress reveals Golgiphagy membrane receptors
Authors: Hickey Kelsey L. , Swarup Sharan , Smith Ian R. , Paoli Julia C. , Miguel Whelan Enya , Paulo Joao A. , Harper J. Wade 
Published: September 2023

AbstractDuring nutrient stress, macroautophagy degrades cellular macromolecules, thereby providing biosynthetic building blocks while simultaneously remodelling the proteome1,2. Although the machinery responsible for initiation of macroautophagy has been well characterized3,4, our understanding of the extent to which individual proteins, protein complexes and organelles are selected for autophagic degradation, and the underlying targeting mechanisms, is limited. Here we use orthogonal proteomic strategies to provide a spatial proteome census of autophagic cargo during nutrient stress in mammalian cells. We find that macroautophagy has selectivity for recycling membrane-bound organelles (principally Golgi and endoplasmic reticulum). Through autophagic cargo prioritization, we identify a complex of membrane-embedded proteins, YIPF3 and YIPF4, as receptors for Golgiphagy. During nutrient stress, YIPF3 and YIPF4 interact with ATG8 proteins through LIR motifs and are mobilized into autophagosomes that traffic to lysosomes in a process that requires the canonical autophagic machinery. Cells lacking YIPF3 or YIPF4 are selectively defective in elimination of a specific cohort of Golgi membrane proteins during nutrient stress. Moreover, YIPF3 and YIPF4 play an analogous role in Golgi remodelling during programmed conversion of stem cells to the neuronal lineage in vitro. Collectively, the findings of this study reveal prioritization of membrane protein cargo during nutrient-stress-dependent proteome remodelling and identify a Golgi remodelling pathway that requires membrane-embedded receptors.
Disulfidptosis-associated lncRNAs predict breast cancer subtypes
Authors: Xia Qing , Yan Qibin , Wang Zehua , Huang Qinyuan , Zheng Xinying , Shen Jinze , Du Lihua , Li Hanbing , Duan Shiwei 
Published: September 2023

AbstractDisulfidptosis is a newly discovered mode of cell death. However, its relationship with breast cancer subtypes remains unclear. In this study, we aimed to construct a disulfidptosis-associated breast cancer subtype prediction model. We obtained 19 disulfidptosis-related genes from published articles and performed correlation analysis with lncRNAs differentially expressed in breast cancer. We then used the random forest algorithm to select important lncRNAs and establish a breast cancer subtype prediction model. We identified 132 lncRNAs significantly associated with disulfidptosis (FDR < 0.01, |R|> 0.15) and selected the first four important lncRNAs to build a prediction model (training set AUC = 0.992). The model accurately predicted breast cancer subtypes (test set AUC = 0.842). Among the key lncRNAs, LINC02188 had the highest expression in the Basal subtype, while LINC01488 and GATA3-AS1 had the lowest expression in Basal. In the Her2 subtype, LINC00511 had the highest expression level compared to other key lncRNAs. GATA3-AS1 had the highest expression in LumA and LumB subtypes, while LINC00511 had the lowest expression in these subtypes. In the Normal subtype, GATA3-AS1 had the highest expression level compared to other key lncRNAs. Our study also found that key lncRNAs were closely related to RNA methylation modification and angiogenesis (FDR < 0.05, |R|> 0.1), as well as immune infiltrating cells (P.adj < 0.01, |R|> 0.1). Our random forest model based on disulfidptosis-related lncRNAs can accurately predict breast cancer subtypes and provide a new direction for research on clinical therapeutic targets for breast cancer.
The influence mechanism of industrial policies on Chinese companies' cross-border M&A decision-making
Authors: Shen Yalan , Yang Mengqi , An Hongyu , Li Kailun 
Published: September 2023

AbstractThis study explored the potential links between Chinese industrial policy and cross-border mergers and acquisitions by Chinese firms from 2009 to 2019. Based on describing China's industrial strategy and evaluating the then-current situation of Chinese enterprises' cross-border mergers and acquisitions, this empirical study constructed a two-way fixed-effect panel model and an intermediate effect model to assess the mechanism of industrial policy's influence on Chinese enterprises' cross-border mergers and acquisitions decisions. The findings were as follows: (1) Industrial policy could promote the implementation of cross-border mergers and acquisitions of Chinese enterprises; (2) By easing financial restrictions, industrial policy could improve firms' access to capital and encourage cross-border mergers and acquisitions. (3) Industrial policies could promote the high political relevance of state-owned enterprises, thus promoting the success of transnational mergers and acquisitions of enterprises. Therefore, it was significant to promote the transformation of industrial policy from subsidy-oriented to performance-oriented and rationally evaluate the risks and benefits of M&A for enterprises to complete cross-border M&A.
Semi-natural housing rescues social behavior and reduces repetitive exploratory behavior of BTBR autistic-like mice
Authors: Binder Matthew S. , Bordey Angelique 
Published: September 2023

AbstractEnvironmental enrichment confers numerous benefits when implemented in murine models and can reduce behavioral symptomatology in models of disease, such as autism spectrum disorder (ASD). However, previous work did not examine the impact of early-life environmental enrichment on each core feature of ASD. We thus implemented a social and physical enrichment at birth, modeling a semi-natural housing, and examined its impact on communicative, social, sensory, and repetitive behaviors using BTBR (autistic-like) and C57BL/6 J (B6, wildtype) mice, comparing them to standard housing conditions. We found that environmental enrichment alleviated the social deficit of juvenile BTBR mice and reduced their repetitive exploratory behavior but did not affect their rough versus smooth texture preference nor the number of maternal isolation-induced pup calls. Environmental enrichment only affected the call characteristics of B6 mice. One interpretation of these data is that early-life environmental enrichment has significant therapeutic potential to treat selective core features of ASD. Another interpretation is that reducing environmental complexity causes selective behavioral deficits in ASD-prone mice suggesting that current standard housing may be suboptimal. Overall, our data illustrate the extent to which the environment influences behavior and highlights the importance of considering housing conditions when designing experiments and interpreting behavioral results.