bluuebunny/crossref_metadata_2025_split huggingface dataset:
The effects of cloth face masks on cardiorespiratory responses and VO2 during maximal incremental running protocol among apparently healthy men
Authors: Ogawa Takeshi , Koike Jun , Hirano Yuka 
Published: December 2022

AbstractWe aimed to determine the effects of wearing a cloth face mask on cardiorespiratory response, peak oxygen uptake (Vo2), respiratory muscle effort, and exercise tolerance during incremental exercise. The study had a randomized crossover design: 11 apparently healthy young men performed the Bruce protocol treadmill test in two conditions, wearing a cloth face mask (CFM) and without CFM (CON), in random order. Minute ventilation and oxygen uptake were measured using a mass spectrometry metabolic analyzer; cardiac output (CO) was measured using an impedance CO monitor; and mouth pressure (Pm) was measured and calculated as an integral Pm to assess respiratory muscle effort. Maximal minute ventilation was 13.4 ± 10.7% lower in the CFM condition than in the CON condition (P < 0.001). The peak Vo2 (52.4 ± 5.6 and 55.0 ± 5.1 mL/kg/min in CFM and CON, respectively) and CO were not significantly different between the two conditions. However, the integral value of Pm was significantly higher (P = 0.02), and the running time to exhaustion was 2.6 ± 3.2% lower (P = 0.02) in the CFM condition than in the CON condition. Our results suggest that wearing a cloth face mask increased respiratory muscle effort and decreased ventilatory volume in healthy young men; however, Vo2 remained unchanged. Exercise tolerance also decreased slightly.
An exosome-related long non-coding RNAs risk model could predict survival outcomes in patients with breast cancer
Authors: Qiu Pengjun , Guo Qiaonan , Lin Jianqing , Pan Kelun , Chen Jianpeng , Ding Mingji 
Published: December 2022

AbstractBreast cancer (BC) is one of the most frequent malignancies among women worldwide. Accumulating evidence indicates that long non-coding RNA (lncRNA) may affect BC progression. Exosomes, a class of small membrane vesicles, have been reported to promote tumor progression through transporting proteins, mRNAs, lncRNAs and some other small molecules. However, the interaction between exosome-related lncRNAs and the microenvironment of malignancies is unclear. Hence, we proceeded to investigate the relationship between exosome-related lncRNAs and BC microenvironment. 121 exosome-associated genes were extracted from ExoBCD database. Then, the Pearson analysis was used to screened out the exosome-related lncRNAs. After that, 15 exosome-related differentially expressed lncRNAs were identified by the correlation with BC prognosis. According to the sum of the expression of these 15 lncRNAs, extracted from The Cancer Genome Atlas, and the regression coefficients, an exosome-related lncRNAs signature was developed by using Cox regression analysis. With the median risk score of the training set, the patients in training and validation sets were separated to low-risk group and high-risk group. Subsequently, the lncRNA–mRNA co-expression network was constructed. The distinct enrichment pathways were compared among the different risk groups by using the R package clusterProfiler. The ESTIMATE method and ssGESA database were adopted to study the ESTIMATE Score and immune cell infiltration. Eventually, the expression of immune checkpoint associated genes, microsatellite instable and the immunophenoscore were further analyzed between different risk groups. Different risk groups exhibited different prognosis, with lower survival rate in the high-risk group. The differentially expressed genes between the different risk groups were enriched in biological processes pathways as well as immune responses. BC patients in high-risk group were identified with lower scores of ESTIMATE scores. Subsequently, we noticed that the infiltrating levels of aDCs, B cells, CD8+ T cells, iDCs, DCs, Neutrophils, macrophages, NK cells, pDCs, Tfh, T helper cells, TIL and Tregs were obvious elevated with the decreased risk score in training and validation cohorts. And some immune signatures were significantly activated with the decreased risk score in both cohorts. Eventually, the exosome-associated lncRNAs risk model was demonstrated to accurately predict immunotherapy response in patients with BC. The results of our study suggest that exosome-related lncRNAs risk model has close relationship with prognosis and immune cells infiltration in BC patients. These findings could make a great contribution to improving BC immunotherapy.
Unravelling the genetics of non-random fertilization associated with gametic incompatibility
Authors: Martin Audrey A. A. , Id-Lahoucine Samir , Fonseca Pablo A. S. , Rochus Christina M. , Alcantara Lucas M. , Tulpan Dan , LeBlanc Stephen J. , Miglior Filippo , Casellas Joaquim , Cánovas Angela , Baes Christine F. , Schenkel Flavio S. 
Published: December 2022

AbstractIn the dairy industry, mate allocation is dependent on the producer’s breeding goals and the parents’ breeding values. The probability of pregnancy differs among sire-dam combinations, and the compatibility of a pair may vary due to the combination of gametic haplotypes. Under the hypothesis that incomplete incompatibility would reduce the odds of fertilization, and complete incompatibility would lead to a non-fertilizing or lethal combination, deviation from Mendelian inheritance expectations would be observed for incompatible pairs. By adding an interaction to a transmission ratio distortion (TRD) model, which detects departure from the Mendelian expectations, genomic regions linked to gametic incompatibility can be identified. This study aimed to determine the genetic background of gametic incompatibility in Holstein cattle. A total of 283,817 genotyped Holstein trios were used in a TRD analysis, resulting in 422 significant regions, which contained 2075 positional genes further investigated for network, overrepresentation, and guilt-by-association analyses. The identified biological pathways were associated with immunology and cellular communication and a total of 16 functional candidate genes were identified. Further investigation of gametic incompatibility will provide opportunities to improve mate allocation for the dairy cattle industry.
Functional characterization of ABCA4 genetic variants related to Stargardt disease
Authors: Kim Bo Min , Song Hyo Sook , Kim Jin-Young , Kwon Eun Young , Ha Seung Yeon , Kim Minsuk , Choi Ji Ha 
Published: December 2022

AbstractThe ATP-binding cassette subfamily 4 (ABCA4), a transporter, is localized within the photoreceptors of the retina, and its genetic variants cause retinal dystrophy. Despite the clinical importance of the ABCA4 transporter, a few studies have investigated the function of each variant. In this study, we functionally characterized ABCA4 variants found in Korean patients with Stargardt disease or variants of the ABCA4 promoter region. We observed that four missense variants—p.Arg290Gln, p.Thr1117Ala, p.Cys1140Trp, and p.Asn1588Tyr—significantly decreased ABCA4 expression on the plasma membrane, which could be due to intracellular degradation. There are four major haplotypes in the ABCA4 proximal promoter. We observed that the H1 haplotype (c.-761C>A) indicated significantly increased luciferase activity compared to that of the wild-type, whereas the H3 haplotype (c.-1086A>C) indicated significantly decreased luciferase activity (P < 0.01 and 0.001, respectively). In addition, c.-900A>T in the H2 haplotype exhibited significantly increased luciferase activity compared with that of the wild-type. Two transcription factors, GATA-2 and HLF, were found to function as enhancers of ABCA4 transcription. Our findings suggest that ABCA4 variants in patients with Stargardt disease affect ABCA4 expression. Furthermore, common variants of the ABCA4 proximal promoter alter the ABCA4 transcriptional activity, which is regulated by GATA-2 and HLF transcription factors.
Improved β-cell function leads to improved glucose tolerance in a transgenic mouse expressing lipoprotein lipase in adipocytes
Authors: Memetimin Hasiyet , Zhu Beibei , Lee Sangderk , Katz Wendy S. , Kern Philip A. , Finlin Brian S. 
Published: December 2022

AbstractLipoprotein lipase (LPL) hydrolyzes the triglyceride core of lipoproteins and also functions as a bridge, allowing for lipoprotein and cholesterol uptake. Transgenic mice expressing LPL in adipose tissue under the control of the adiponectin promoter (AdipoQ-LPL) have improved glucose metabolism when challenged with a high fat diet. Here, we studied the transcriptional response of the adipose tissue of these mice to acute high fat diet exposure. Gene set enrichment analysis (GSEA) provided mechanistic insight into the improved metabolic phenotype of AdipoQ-LPL mice. First, the cholesterol homeostasis pathway, which is controlled by the SREBP2 transcription factor, is repressed in gonadal adipose tissue AdipoQ-LPL mice. Furthermore, we identified SND1 as a link between SREBP2 and CCL19, an inflammatory chemokine that is reduced in AdipoQ-LPL mice. Second, GSEA identified a signature for pancreatic β-cells in adipose tissue of AdipoQ-LPL mice, an unexpected finding. We explored whether β-cell function is improved in AdipoQ-LPL mice and found that the first phase of insulin secretion is increased in mice challenged with high fat diet. In summary, we identify two different mechanisms for the improved metabolic phenotype of AdipoQ-LPL mice. One involves improved adipose tissue function and the other involves adipose tissue—pancreatic β-cell crosstalk.
Molecular surveillance of arboviruses circulation and co-infection during a large chikungunya virus outbreak in Thailand, October 2018 to February 2020
Authors: Khongwichit Sarawut , Chuchaona Watchaporn , Vongpunsawad Sompong , Poovorawan Yong 
Published: December 2022

AbstractA large national outbreak of chikungunya virus (CHIKV) was recently reported in Thailand. While dengue virus (DENV) infection tends to occur year-round with an upsurge in the rainy season, Zika virus (ZIKV) also circulates in the country. The overlap in the distribution of these viruses increased the probability of co-infections during the heightened CHIKV activity. By examining 1806 patient serum samples submitted for CHIKV diagnostics from October 2018-February 2020 (511 CHIKV-negatives and 1295 CHIKV-positives), we used real-time reverse transcription-polymerase chain reaction to identify DENV and ZIKV individually. A total of 29 ZIKV and 36 DENV single-infections were identified. Interestingly, 13 co-infection cases were observed, of which 8 were CHIKV/DENV, 3 were CHIKV/ZIKV, and 2 were DENV/ZIKV. There were six DENV genotypes (13 DENV-1 genotype I, 10 DENV-2 Asian I, 10 DENV-2 Cosmopolitan, 6 DENV-3 genotype I, 2 DENV-3 genotype III, and 5 DENV-4 genotype I). Additionally, ZIKV strains identified in this study either clustered with strains previously circulating in Thailand and Singapore, or with strains previously reported in China, French Polynesia, and the Americas. Our findings reveal the co-infection and genetic diversity patterns of mosquito-borne viruses circulating in Thailand.
Probing the interfacial coupling in ternary van der Waals heterostructures
Authors: Wu Heng , Lin Miao-Ling , Leng Yu-Chen , Chen Xue , Zhou Yan , Zhang Jun , Tan Ping-Heng 
Published: December 2022

AbstractGood interfacial coupling between each constituent of van der Waals Heterostructures (vdWHs) is the prerequisite for the distinguished performance of related devices. Since vdWHs-based devices commonly consist of three or more constituents, an effective evaluation of interfacial coupling quality in multiple heterointerfaces is critical during the device fabrication process. Here, in ternary vdWHs composed of hBN, graphene (Gr) and transition metal dichalcogenide (TMD) flakes, which are essential building blocks for low-dimensional vdWHs-based electronic and optoelectronic devices, we realized probe and quantification of the interfacial coupling by low-frequency Raman spectroscopy under resonant excitation through the C exciton energy in TMD constituents. Based on the frequencies of emerging interlayer vibration modes in hBN/TMD/Gr ternary vdWHs, the interfacial coupling force constants of hBN/TMD and TMD/Gr interfaces are estimated as parameters to quantitatively evaluate the interfacial coupling strength at the corresponding interfaces. Moreover, the interfacial coupling strength at Gr/hBN interface is also successfully revealed in Gr/hBN/MoTe2 ternary vdWHs, which cannot be directly characterized from Gr/hBN binary vdWH due to its unobservable interlayer modes with weak electron-phonon coupling. This general strategy can be further extended to probe and quantify the interfacial coupling quality in polynary vdWHs and related devices.
Characterization of multi-domain postoperative recovery trajectories after cardiac surgery using a digital platform
Authors: Mori Makoto , Dhruva Sanket S. , Geirsson Arnar , Krumholz Harlan M. 
Published: December 2022

AbstractUnderstanding postoperative recovery is critical for guiding efforts to improve post-acute phase care. How recovery evolves during the first 30 days after cardiac surgery is not well-understood. A digital platform may enable granular quantification of recovery by frequently capturing patient-reported outcome measures (PROM) that can be clinically implemented to support recovery. We conduct a prospective cohort study using a digital platform to measure recovery after cardiac surgery using a PROM sent every 3 days for 30 days after surgery to characterize recovery in multiple domains (e.g., pain, sleep, activities of daily living, anxiety) and to identify factors related to the patient’s perception of overall recovery. We enroll patients who underwent cardiac surgery at a tertiary center between January 2019 and March 2020 and automatically deliver PROMs and reminders electronically. Of the 10 surveys delivered per patient, 8 (IQR 6–10) are completed. Patients who experienced postoperative complications more commonly belong to the worst overall recovery trajectory. Of the 12 domains modeled, only the worst anxiety trajectory is associated with the worse overall recovery trajectory membership, suggesting that even when patients struggle in the recovery of other domains, the patient may still feel progress in their recovery. We demonstrate that using a digital platform, automated PROM data collection, and characterization of multi-domain recovery trajectories is feasible and likely implementable in clinical practice. Overall recovery may be impacted by complications, while slow progress in constituent domains may still allow for the perception of overall recovery progression.
Gut metagenome profile of the Nunavik Inuit youth is distinct from industrial and non-industrial counterparts
Authors: Abed Jehane Y. , Godon Thibaud , Mehdaoui Fadwa , Plante Pier-Luc , Boissinot Maurice , Bergeron Michel G. , Bélanger Richard E. , Muckle Gina , Poliakova Natalia , Ayotte Pierre , Corbeil Jacques , Rousseau Elsa 
Published: December 2022

AbstractComparative metagenomics studies have highlighted differences in microbiome community structure among human populations over diverse lifestyles and environments. With their unique environmental and historical backgrounds, Nunavik Inuit have a distinctive gut microbiome with undocumented health-related implications. Using shotgun metagenomics, we explored the taxonomic and functional structure of the gut microbiome from 275 Nunavik Inuit ranging from 16 to 30-year-old. Whole-metagenome analyses revealed that Nunavik Inuit youths have a more diverse microbiome than their non-industrialized and industrialized counterparts. A comparison of k-mer content illustrated the uniqueness of the Nunavik gut microbiome. Short-chain fatty acids producing species, and carbohydrates degradation pathways dominated Inuit metagenomes. We identified a taxonomic and functional signature unique to the Nunavik gut microbiome contrasting with other populations using a random forest classifier. Here, we show that the Nunavik Inuit gut microbiome exhibits high diversity and a distinct community structure.
Ultrafast signatures of spin and orbital order in antiferromagnetic α-Sr2CrO4
Authors: Lee Min-Cheol , Occhialini Connor , Li Jiarui , Zhu Zhihai , Sirica Nicholas S. , Mix L. T. , Kim Soyeun , Yarotski Dmitry A. , Comin Riccardo , Prasankumar Rohit P. 
Published: December 2022

AbstractThe antiferromagnetic Mott insulator α-Sr2CrO4 possesses multiple spin and orbital ordered phases, but their unique interplay is still relatively unexplored. Here, we used femtosecond optical spectroscopy to study ultrafast spin and orbital ordering dynamics in α-Sr2CrO4 through their non-equilibrium response to photoexcitation. By varying the pump photon energy, we selectively drove inter-site spin hopping between neighboring Cr t2g orbitals and charge transfer-type transitions between oxygen 2p and Cr eg orbitals. The resulting transient reflectivity dynamics revealed temperature-dependent anomalies across the Néel temperature for spin ordering as well as the transition temperatures linked to different types of orbital order. Our results reveal distinct relaxation timescales for spin and orbital orders in α-Sr2CrO4 and provide experimental evidence for the phase transition at TO, possibly related to antiferro-type orbital ordering.
Oscillations of highly magnetized non-rotating neutron stars
Authors: Leung Man Yin , Yip Anson Ka Long , Cheong Patrick Chi-Kit , Li Tjonnie Guang Feng 
Published: December 2022

AbstractHighly magnetized neutron stars are promising candidates to explain some of the most peculiar astronomical phenomena, for instance, fast radio bursts, gamma-ray bursts, and superluminous supernovae. Pulsations of these highly magnetized neutron stars are also speculated to produce detectable gravitational waves. In addition, pulsations are important probes of the structure and equation of state of the neutron stars. The major challenge in studying the pulsations of highly magnetized neutron stars is the demanding numerical cost of consistently solving the nonlinear Einstein and Maxwell equations under minimum assumptions. With the recent breakthroughs in numerical solvers, we investigate pulsation modes of non-rotating neutron stars which harbour strong purely toroidal magnetic fields of 1015−17 G through two-dimensional axisymmetric general-relativistic magnetohydrodynamics simulations. We show that stellar oscillations are insensitive to magnetization effects until the magnetic to binding energy ratio goes beyond 10%, where the pulsation mode frequencies are strongly suppressed. We further show that this is the direct consequence of the decrease in stellar compactness when the extreme magnetic fields introduce strong deformations of the neutron stars.
Explaining the pseudogap through damping and antidamping on the Fermi surface by imaginary spin scattering
Authors: Krien Friedrich , Worm Paul , Chalupa-Gantner Patrick , Toschi Alessandro , Held Karsten 
Published: December 2022

AbstractThe mechanism of the pseudogap observed in hole-doped cuprates remains one of the central puzzles in condensed matter physics. We analyze this phenomenon via a Feynman-diagrammatic inspection of the Hubbard model. Our approach captures the pivotal interplay between Mott localization and Fermi surface topology beyond weak-coupling spin fluctuations, which would open a spectral gap near hot spots. We show that strong coupling and particle-hole asymmetry trigger a very different mechanism: a large imaginary part of the spin-fermion vertex promotes damping of antinodal fermions and, at the same time, protects the nodal Fermi arcs (antidamping). Our analysis naturally explains puzzling features of the pseudogap observed in experiments, such as Fermi arcs being cut off at the antiferromagnetic zone boundary and the subordinate role of hot spots.
Design and characterisation of the high‐current DC breaker driven by explosive
Authors: Tang Cunwen , Li Hua , Song Zhiquan , Ye Jifei , Xu Meng , Hu Xingguang , Peng Fu 
Published: December 2022

AbstractThe development of a high‐current DC breaker is very important for the protection of the expensive superconducting magnet. A kind of an economic switch called pyrobreaker, which is driven by explosive detonation waves, has been used as the backup quench protection due to its inherent reliability and fast response. A prototype pyrobreaker with a special structure that can withstand and break 100 kA is discussed. The numerical material model is taken to calculate the fracture demand of contact and the mass demand of explosive. Then, the detonation wave and contact breaking process are simulated by the ANSYS software. The performance of the design and characterisation during dynamic breaking are compared with simulation and no‐load experiment test. At the end, the temperature rise test and the breaking test under 100 kA are completed successfully. These results demonstrate that the design of 100 kA pyrobreaker is reliable.
Topology review of doubly grounded transformer‐less single‐phase inverters
Authors: Yao Zhilei 
Published: December 2022

AbstractPhotovoltaic (PV) transformer‐less single‐phase inverters are widely used in the solar generation systems because of low cost, high power density, and high efficiency. However, there is a common mode leakage current in the transformer‐less inverters, which may endanger personal safety. In order to reduce the common mode leakage current, extra semiconductors should be added into the PV inverters to decouple the dc side from the ac side. However, the common mode leakage current is affected by the environmental condition and parameters of power devices. Since grounds of the PV array and the output terminal of the inverter are shorted, the common mode leakage current in the doubly grounded inverters can be eliminated thoroughly. Topologies of the doubly grounded inverters are reviewed in this paper, which can be divided into two categories, that is, hybrid topologies and topologies using energy storage elements. Derivation of the reviewed topologies is given. Different topologies of doubly grounded transformer‐less single‐phase inverters are compared.