bluuebunny/crossref_metadata_2025_split huggingface dataset:
Evaluation of the anti-inflammatory, antioxidant, and cytotoxic potential of Cardamine amara L. (Brassicaceae): A comprehensive biochemical, toxicological, and in silico computational study
Authors: Basit Abdul , Ahmad Saeed , Khan Kashif ur Rehman , Aati Hanan Y. , Sherif Asmaa E. , Ovatlarnporn Chitchamai , Khan Safiullah , Rao Huma , Arshad Muhammad Adeel , Shahzad Muhammad Nadeem , Perveen Shagufta 
Published: January 2023

Introduction:Cardamine amara L. (Brassicaceae) is an important edible plant with ethnomedicinal significance. This study aimed at evaluating the phytochemical composition, anti-inflammatory, antioxidant and cytotoxicity aspects of the hydro-alcoholic extract of C. amara (HAECA).Methods: The phytochemical composition was evaluated through total phenolic contents (TPC), total flavonoid contents (TFC) determination and UPLC-QTOF-MS profiling. Anti-inflammatory evaluation of HAECA was carried out through the carrageenan induced paw edema model. Four in vitro methods were applied in the antioxidant evaluation of HAECA. MTT assay was used to investigate the toxicity profile of the species against human normal liver cells (HL7702), human liver cancer cell lines (HepG2) and human breast cancer cell lines (MCF-7). Three major compounds (Gentisic acid, skullcapflavone and conidendrine) identified in UPLC-Q-TOF-MS analysis were selected for in silico study against cyclooxygenase (COX-I and COX-II).Results and Discussion: The findings revealed that HAECA is rich in TPC (39.32 ± 2.3 mg GAE/g DE) and TFC (17.26 ± 0.8 mg RE/g DE). A total of 21 secondary metabolites were tentatively identified in UPLC-Q-TOF-MS analysis. In the MTT cytotoxicity assay, the extract showed low toxicity against normal cell lines, while significant anticancer activity was observed against human liver and breast cancer cells. The carrageenan induced inflammation was inhibited by HAECA in a dose dependent manner and showed a marked alleviation in the levels of oxidative stress (catalase, SOD, GSH) and inflammatory markers (TNF-α, IL-1β). Similarly, HAECA showed maximum antioxidant activity through the Cupric reducing power antioxidant capacity (CUPRAC) assay (31.21 ± 0.3 mg TE/g DE). The in silico study revealed a significant molecular docking score of the three studied compounds against COX-I and COX-I. Conclusively the current study encourages the use of C. amara as a novel polyphenolic rich source with anti-inflammatory and antioxidant potential and warrants further investigations on its toxicity profile.
Ligand and structure-based approaches for the exploration of structure–activity relationships of fusidic acid derivatives as antibacterial agents
Authors: Zheng Wende , Tu Borong , Zhang Zhen , Li Jinxuan , Yan Zhenping , Su Kaize , Deng Duanyu , Sun Ying , Wang Xu , Zhang Bingjie , Zhang Kun , Wong Wing-Leung , Wu Panpan , Hong Weiqian David , Ang Song 
Published: January 2023

Introduction: Fusidic acid (FA) has been widely applied in the clinical prevention and treatment of bacterial infections. Nonetheless, its clinical application has been limited due to its narrow antimicrobial spectrum and some side effects.Purpose: Therefore, it is necessary to explore the structure–activity relationships of FA derivatives as antibacterial agents to develop novel ones possessing a broad antimicrobial spectrum.Methods and result: First, a pharmacophore model was established on the nineteen FA derivatives with remarkable antibacterial activities reported in previous studies. The common structural characteristics of the pharmacophore emerging from the FA derivatives were determined as those of six hydrophobic centers, two atom centers of the hydrogen bond acceptor, and a negative electron center around the C-21 field. Then, seven FA derivatives have been designed according to the reported structure–activity relationships and the pharmacophore characteristics. The designed FA derivatives were mapped on the pharmacophore model, and the Qfit values of all FA derivatives were over 50 and FA-8 possessed the highest value of 82.66. The molecular docking studies of the partial target compounds were conducted with the elongation factor G (EF-G) of S. aureus. Furthermore, the designed FA derivatives have been prepared and their antibacterial activities were evaluated by the inhibition zone test and the minimum inhibitory concentration (MIC) test. The derivative FA-7 with a chlorine group as the substituent group at C-25 of FA displayed the best antibacterial property with an MIC of 3.125 µM. Subsequently, 3D-QSAR was carried on all the derivatives by using the CoMSIA mode of SYBYL-X 2.0.Conclusion: Hence, a computer-aided drug design model was developed for FA, which can be further used to optimize FA derivatives as highly potent antibacterial agents.
Susceptibility profile of blaOXA-23 and metallo-β-lactamases co-harbouring isolates of carbapenem resistant Acinetobacter baumannii (CRAB) against standard drugs and combinations
Authors: Sharma Swati , Banerjee Tuhina , Yadav Ghanshyam , Kumar Ashok 
Published: January 2023

BackgroundThe rapid emergence of carbapenem resistant Acinetobacter baumannii (CRAB) has resulted in an alarming situation worldwide. Realizing the dearth of literature on susceptibility of CRAB in genetic context in the developing region, this study was performed to determine the susceptibility profile against standard drugs/combinations and the association of in-vitro drug synergy with the prevalent molecular determinants.Methods and findingsA total of 356 clinical isolates of A. baumannii were studied. Confirmation of the isolates was done by amplifying recA and ITS region genes. Susceptibility against standard drugs was tested by Kirby Bauer disc diffusion. Minimum inhibitory concentration (MIC), MIC50 and MIC90 values against imipenem, meropenem, doripenem, ampicillin/sulbactam, minocycline, amikacin, polymyxin B, colistin and tigecycline was tested as per guidelines. Genes encoding enzymes classes A (blaGES, blaIMI/NMC-A, blaSME, blaKPC), B (blaIMP, blaVIM, blaNDM) and D (blaOXA-51,blaOXA-23 and blaOXA-58) were detected by multiplex polymerase chain reaction. Synergy against meropenem-sulbactam and meropenem-colistin combinations was done by checkerboard MIC method. Correlation of drug synergy and carbapenemase encoding genes was statistically analyzed.ResultsOf the total, resistance above 90% was noted against gentamicin, ciprofloxacin, levofloxacin, ceftazidime, cefepime, ceftriaxone, cotrimoxazole and piperacillin/tazobactam. By MIC, resistance rates from highest to lowest was seen against imipenem 89.04% (n=317), amikacin 80.33% (n=286), meropenem 79.49% (n=283), doripenem 77.80% (n=277), ampicillin/sulbactam 71.62% (n=255), tigecycline 55.61% (n=198), minocycline 14.04% (n=50), polymyxin B 10.11% (n=36), and colistin 2.52% (n=9). CRAB was 317 (89.04%), 81.46% (n=290) were multidrug resistant and 13.48% (n=48) were extensively drug resistant. All the CRAB isolates harboured blaOXA-51 gene (100%) and 94% (n=298) blaOXA-23 gene. The blaIMP gene was most prevalent 70.03% (n=222) followed by blaNDM, 59.62% (n=189). Majority (87.69%, 278) were co-producers of classes D and B carbapenemases, blaOXA-23 with blaIMP and blaNDM being the commonest. Synergy with meropenem-sulbactam and meropenem-colistin was 47% and 57% respectively. Reduced synergy (p= &lt;0.0001) was noted for those harbouring blaOXA-51+blaOXA-23with blaNDM gene alone or co-producers.ConclusionPresence of blaNDM gene was a significant cause of synergy loss in meropenem-sulbactam and meropenem-colistin. In blaNDM endemic regions, tigecycline, minocycline and polymyxins could be viable options against CRAB isolates with more than one carbapenemase encoding genes.
Detection and homology analysis of carbapenem resistant Acinetobacter baumannii resistance gene
Authors: Huang Hua-Liang , Li Yue-Yu , Guo Hong-Bo 
Published: January 2023

ObjectiveTo explore the carrying status and homology of carbapenem resistant Acinetobacter baumannii (CRAB) in our hospital.MethodsFrom January 2015 to December 2017, 52 strains of acinetobacter baumannii isolated from the bacteria room of the clinical laboratory of Baogang hospital in Inner Mongolia were selected as the research object. K-B disk diffusion method and Vitek-2 were used to determine the drug sensitivity of Acinetobacter baumannii. The drug resistance gene was detected by polymerase chain reaction (PCR) and its homology was analyzed by pulsed field gel electrophoresis (PFGE).ResultsExcept for Cefoperazone/sulbactam, other antibiotics were resistant to ab. The detection rate of drug resistance gene class C β-lactamases (ADC) was 100%, and the higher detection rates of other drug resistance genes were class D β-lactamases (OXA)-51 (36 strains, 90.0%),disinfectant gene qacE△1-sull (32 strains, 80.0%), and klebsiella pneumoniae carbapenemase (KPC) gene was not detected. 2-8 drug resistance genes were detected in each CRAB strain, and the strains with 6 drug resistance genes were the most (15 strains, 37.5%); Among the detected drug-resistant gene combinations, ADC+OXA-23 + OXA-51 gene was detected at the same time (29 strains, 72.5%), followed by ADC+ intl1 + qacE △ 1-sull gene (26 strains, 65.0%), ADC + qacE △ 1-sull + ant (3 ‘‘) -i gene (19 strains, 47.5%), and 11 strains (27.5%). There were 19 different types in PFGE homology test, each type was 1-9 strains, including 9 strains of A5 type and 8 strains of A18 type, mainly from intensive care unit.ConclusionCRAB in the hospital is highly resistant to common clinical antibiotics. OXA-23 and OXA-51 genes are most likely to be the main factors causing drug resistance of Acinetobacter baumannii in the hospital. Homology analysis showed that there was CRAB nosocomial infection transmission in different wards of the hospital.
Analysis of the anatomic eligibility for transcarotid artery revascularization in Chinese patients who underwent carotid endarterectomy and transfemoral carotid artery stenting
Authors: Fan Weijian , Shi Weihao , Lu Shuangshuang , Guo Wencheng , Tong Jindong , Tan Jinyun , Yu Bo 
Published: January 2023

ObjectiveTranscarotid artery revascularization (TCAR) is thought to be a promising technique and instrument for treating carotid stenosis with favorable outcomes. Since there remain several differences in anatomic characteristics among races, this study was conducted to investigate the anatomic eligibility of TCAR in Chinese patients who underwent carotid revascularization.MethodsA retrospective review of patients with carotid stenosis from 2019 to 2021 was conducted. The anatomic eligibility of TCAR was based on the instruction of the ENROUTE Transcarotid Neuroprotection System. The carotid artery characteristics and configuration of the circle of Willis (CoW) were evaluated by CT angiography. The demographic and clinical characteristics and procedure-related complications were recorded. Logistic regression was used to analyze the independent factors for TCAR eligibility.ResultsOf 289 consecutive patients [222 for carotid endarterectomy (CEA) and 67 for transfemoral carotid artery stenting (TF-CAS)] identified, a total of 215 patients (74.4%) met TCAR anatomic eligibility. Specifically, 83.7% had mild common carotid artery (CCA) puncture site plaque, 95.2% had 4–9 mm internal carotid artery diameters, 95.8% had &gt;6 mm CCA diameter, and 98.3% had &gt;5 cm clavicle to carotid bifurcation distance. Those who were female (OR, 5.967; 95% CI: 2.545–13.987; P &lt; 0.001), were of an older age (OR, 1.226; 95% CI: 1.157–1.299; P &lt; 0.001), and higher body mass index (OR, 1.462; 95% CI: 1.260–1.697; P &lt; 0.001) were prone to be associated with TCAR ineligibility. In addition, 71 patients with TCAR eligibility (33.0%) were found to combine with incomplete CoW. A high risk for CEA was found in 29 patients (17.3%) with TCAR eligibility, and a high risk for TF-CAS was noted in nine patients (19.1%) with TCAR eligibility. Overall, cranial nerve injury (CNI) was found in 22 patients after CEA, while 19 of them (11.3%) met TCAR eligibility.ConclusionA significant proportion of Chinese patients meet the anatomic criteria of TCAR, making TCAR a feasible treatment option in China. Anatomic and some demographic factors play key roles in TCAR eligibility. Further analysis indicates a potential reduction of procedure-related complications in patients with high-risk carotid stenosis under the TCAR procedure.
Immune-related potential biomarkers and therapeutic targets in coronary artery disease
Authors: Liu Chaosheng , Liu Jifeng , Zhang Yunshu , Wang Xi , Guan Yue 
Published: January 2023

BackgroundCoronary artery disease (CAD) is a complex illness with unknown pathophysiology. Peripheral biomarkers are a non-invasive method required to track the onset and progression of CAD and have unbeatable benefits in terms of early identification, prognostic assessment, and categorization of the diagnosis. This study aimed to identify and validate the diagnostic and therapeutic potential of differentially expressed immune-related genes (DE-IRGs) in CAD, which will aid in improving our knowledge on the etiology of CAD and in forming genetic predictions.MethodsFirst, we searched coronary heart disease in the Gene Expression Omnibus (GEO) database and identified GSE20680 (CAD = 87, Normal = 52) as the trial set and GSE20681 (CAD = 99, Normal = 99) as the validation set. Functional enrichment analysis using protein-protein interactions (PPIs), Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) was carried out on the identified differentially expressed genes. Optimal feature genes (OFGs) were generated using the support vector machine recursive feature elimination algorithm and the least absolute shrinkage and selection operator (LASSO) algorithm. Furthermore, immune infiltration in CAD patients and healthy controls was compared using CIBERSORT, and the relationship between immune cells and OFGs was examined. In addition, we constructed potential targeted drugs for this model through the Drug-Gene Interaction database (DGIdb) database. Finally, we verify the expression of S100A8-dominated OFGs in the GSE20681 dataset to confirm the universality of our study.ResultsWe identified the ten best OFGs for CAD from the DE-IRGs. Functional enrichment analysis showed that these marker genes are crucial for receptor-ligand activity, signaling receptor activator activity, and positive control of the response to stimuli from the outside world. Additionally, CIBERSORT revealed that S100A8 could be connected to alterations in the immune microenvironment in CAD patients. Furthermore, with the help of DGIdb and Cytoscape, a total of 64 medicines that target five marker genes were subsequently discovered. Finally, we verified the expression of the OFGs genes in the GSE20681 dataset between CAD patients and normal patients and found that there was also a significant difference in the expression of S100A8.ConclusionWe created a 10-gene immune-related prognostic model for CAD and confirmed its validity. The model can identify potential biomarkers for CAD prediction and more accurately gauge the progression of the disease.
Early cretaceous ridge subduction in the Shandong Peninsula, Eastern China, indicated by Laoshan A-type granite
Authors: Li Jie , Li He , Li Congying , Song Mingchun , Jiang Mengyao , Yuan Shuai , Zhang Lipeng 
Published: January 2023

Early Cretaceous A-type granites are widespread in the Shandong Peninsula, which can be used to elucidate the tectonic evolution of the eastern China and the destruction of the North China Craton. However, their genesis is still controversial. Several competing models, ranging from slab break-off, postorogenic extension, foundering of the lower crust and ridge subduction, were proposed. Here, we report zircon U–Pb ages, whole-rock and apatite geochemical compositions of the Laoshan granite and discuss its tectonic implications. The Laoshan granite has typical characteristics of A-type granite with high FeOT/(FeOT + MgO) ratios (0.90–0.97) and 10000*Ga/Al ratios (2.70–3.36) and high total alkali (Na2O + K2O: 7.95–8.70 wt%) contents and Zr+Nb+Ce+Y (most &gt;350 ppm) concentrations. The Laoshan granite is further classified as A1-type based on the Yb/Ta-Y/Nb and Ce/Nb-Y/Nb diagrams and the Nb-Y-3Ga and Nb-Y-Ce triangular discriminant diagrams. Zircon U–Pb dating of two Laoshan granite samples yielded emplacement ages of 117.8 ± 1.0 Ma and 120.1 ± 1.3 Ma, respectively. The oxygen fugacity of the Laoshan granite magma is low, as indicated by zircon Ce4+/Ce3+ ratios (most &lt;300). The crystallization temperature of zircon varies significantly, ranging from 652 to 830°C. The apatite compositions show that the Laoshan granite has high F (2.09–2.72 wt%) and low Cl (0.01–0.09 wt%) contents, consistent with influence by fluid released from the decomposition of phengite. Apatite rare earth elements show that mantle sources are also involved in Laoshan A-type granite. Combined previous studies of A-type granitic plutons in the Shandong Province and the Lower Yangtze River belt with the drifting history of the Pacific plate, we propose that the flat subduction of the spreading ridge between the Pacific and the Izanagi plates was responsible for the formation of Laoshan A-type granite.
Mechanical response and parametric analysis of a deep excavation structure overlying an existing subway station: A case study of the Beijing subway station expansion
Authors: Han Jianyong , Wang Jun , Cheng Cheng , Zhang Chaozhe , Liang Erbin , Wang Zhikang , Song Jae-Joon , Leem Junsu 
Published: January 2023

The existing Beijing Pingguoyuan Subway Station was extended through a extension project. The excavation for the extension was located directly above the existing station. Complex interactions exist between the existing structure and the retaining pile wall of the excavation. Based on this project, three-dimensional finite element models were established to investigate the mechanical characteristics of the embedded and non-embedded retaining pile walls. A parametric analysis was performed for both types of pile walls. The stress and deformation characteristics of the retaining pile walls and existing structures were analyzed. The results show that when the bottom of the non-embedded retaining pile walls are connected to the existing structure, the uplift of the existing structure is essentially constant; however, the maximum displacement of the pile is increased by approximately 2.7 times, and the bending moment of the pile is reduced to 57.1% of the connection condition. As the distance between the embedded retaining pile wall and the existing station increases, the uplift of the existing station increases linearly, whereas the soil between the pile and the station exhibits a non-linear increasing trend. The displacement of the embedded retaining pile wall increases as the inner force decreases. When the distance is greater than 4.7 m, the displacement and force of the pile remains essentially unchanged. The effect of the pile embedded depth on the force and deformation of the pile is mainly observed in the lower part of the pile. As the embedded depth increases, the maximum displacement decreases by approximately 16.9%, the maximum bending moment decreases, and the maximum negative bending moment increases. The key contribution of this research is to provide a prediction method for the mechanical behaviors of a expansion project. The findings from the study also provide industry practitioners with a comprehensive guide regarding the specific applications of the construction technology of a deep excavation structure overlying an existing subway station.
The bleaching limits of IRSL signals at various stimulation temperatures and their potential inference of the pre-burial light exposure duration
Authors: Zhang Jingran , Guralnik Benny , Tsukamoto Sumiko , Ankjærgaard Christina , Reimann Tony 
Published: January 2023

Infrared Stimulated Luminescence (IRSL) techniques are being increasingly used for dating sedimentary feldspars in the middle to late Quaternary. By employing several subsequent stimulations at increasing temperatures, a series of post-IR IRSL (pIRIR) signals with different characteristics (stability and bleachability) can be obtained for an individual sample. It has been experimentally demonstrated that higher-temperature pIRIR signals are more stable, but they tend to exhibit larger residual doses up to few tens of Gy, potentially causing severe age overestimation in young samples. In this study we conducted comprehensive bleaching experiments of IRSL and pIRIR signals using a loess sample from China, and demonstrated that non-bleachable components in the IR (and possibly pIRIR) signals do exist. The level of such non-bleachable signal shows clearly positive correlation with preheat/stimulation temperature, which further supports the notion that lower temperature pIRIR are advantageous to date young samples and sediments especially from difficult-to-bleach environments. These results display a potential in constrain the pre-burial light exposure history of sediment utilizing multiple feldspar post-IR IRSL (pIRIR) signals. For the studied loess sample, we infer that prior to its last burial, the sample has received an equivalent of &gt;264 h exposure to the SOL2 simulator (more than 2,000 h of natural daylight).
Psychometric properties and invariance of the self-efficacy for writing scale in Peruvian high school students
Authors: León-Gutiérrez Matilde , Morales-García Wilter C. , Morales-García Mardel , Jaimes-Soncco Jania , Saintila Jacksaint , Mamani Percy G. Ruiz 
Published: January 2023

IntroductionBeing able to write is a key competency in educational models; therefore, it is important to have a scale to assess writing self-efficacy.ObjectiveThe study evaluated the internal structure, providing evidence of reliability, validity, and factorial invariance of the self-efficacy for writing scale (SEWS) across sex and age in Peruvian schoolchildren.MethodsAn instrumental study was carried out on 1,107 Peruvian adolescents (early, middle, and late) of school age. A confirmatory factor analysis was carried out and the factorial invariance for sex and age was evaluated.ResultsA good fit was obtained for the total sample (χ2= 1229.08, df = 101, CFI = 0.997, TLI = 0.997, RMSEA = 0.057 [90% CI: 0.0540.059], and SRMR = 0.029) and presented good α, ω, and H reliability (&gt;0.89). Correlations between another measure of writing self-efficacy (p =0.76;p&lt; .01), study satisfaction (p= 0.31;p&lt; .01), and burnout (p= −0.12;p&lt; .01) scales supported convergent and concurrent validity. Multigroup factor analysis supported strict invariance for sex and age, for which the SEWS provides evidence of validity and reliability.DiscussionThis adaptation of the SEWS is a valid, reliable, and invariant measure that can be considered for assessing self-efficacy for writing in Peruvian high school students.