bluuebunny/crossref_metadata_2025_split huggingface dataset:
Precise modulation of transcription factor levels identifies features underlying dosage sensitivity
Authors: Naqvi Sahin , Kim Seungsoo , Hoskens Hanne , Matthews Harold S. , Spritz Richard A. , Klein Ophir D. , Hallgrímsson Benedikt , Swigut Tomek , Claes Peter , Pritchard Jonathan K. , Wysocka Joanna 
Published: April 2023

AbstractTranscriptional regulation exhibits extensive robustness, but human genetics indicates sensitivity to transcription factor (TF) dosage. Reconciling such observations requires quantitative studies of TF dosage effects at trait-relevant ranges, largely lacking so far. TFs play central roles in both normal-range and disease-associated variation in craniofacial morphology; we therefore developed an approach to precisely modulate TF levels in human facial progenitor cells and applied it to SOX9, a TF associated with craniofacial variation and disease (Pierre Robin sequence (PRS)). Most SOX9-dependent regulatory elements (REs) are buffered against small decreases in SOX9 dosage, but REs directly and primarily regulated by SOX9 show heightened sensitivity to SOX9 dosage; these RE responses partially predict gene expression responses. Sensitive REs and genes preferentially affect functional chondrogenesis and PRS-like craniofacial shape variation. We propose that such REs and genes underlie the sensitivity of specific phenotypes to TF dosage, while buffering of other genes leads to robust, nonlinear dosage-to-phenotype relationships.
Risk factors and a novel cerebral infarction extent scoring system for postoperative cerebral ischemia in patients with ischemic Moyamoya disease
Authors: Chen Yuanbing , Gong Xuan , Yang Zeng , Chen Fenghua , Wang Junyu 
Published: April 2023

AbstractPostoperative cerebral ischemic complication is the most common complication of revascularization surgery for patients with moyamoya disease (MMD). This retrospective study was conducted on 63 patients with ischemic MMD. Postoperative ischemia occurred in 15 of the 70 revascularization operations performed for patients after surgical revascularization, translating to an incidence of 21.4%. Univariate analysis revealed that onset infarction (p = 0.015), posterior cerebral artery involvement (p = 0.039), strict perioperative management (p = 0.001), interval time between transient ischemic attack (TIA) or infarction presentation and operation (p = 0.002) and preoperatively cerebral infarction extent score (CIES) (p = 0.002) were significantly associated with postoperative cerebral ischemia. Multivariate analysis revealed that strict perioperative management (OR = 0.163; p = 0.047), and preoperatively CIES (OR = 1.505; p = 0.006) were independently associated with postoperative cerebral ischemia-related complications. After comprehensive improvement of perioperative management protocol, the incidence of symptomatic infarction declined to 7.4% (4 out of 54). Analysis of the area under the receiver operating characteristic curve (AUROC) indicated CIES was a predictor for both postoperative ischemia and high follow-up modified Rankin Scale scores. In summary, strict perioperative management and CIES were identified as independent risk factors for postoperative ischemic complications in ischemic MMD, demonstrating that comprehensive and individualized perioperative management improve postoperative outcomes in patients with MMD. Furthermore, application of CIES to evaluate pre-existing cerebral infarction can improve the management of patients.
Application of asymmetrical configuration in electrochemical noise to investigate corrosion inhibition of aluminum alloy by Ranunculus Arvensis/silver nanoparticles
Authors: Sajadi Ghazal Sadat , Naghizade Razieh , Hosseini Seyed Mohammad Ali 
Published: April 2023

AbstractAsymmetric Configuration (As-Co) in the electrochemical noise (EN) was used to evaluateRanunculus Arvensis/ silver nanoparticles (RA/Ag NPs) as corrosion inhibitor for aluminum alloy (AA 2030) when gets exposed to 3.5% NaCl media. The ECN results of Asymmetric Configuration (As-Co) and Symmetric Configuration (Sy-Co) were interpreted using wavelet and statistical methods. The standard deviation of partial signal (SDPS) plots derived using of wavelet. The SDPS plot of As-Co demonstrated that the quantity of electric charge (Q) decreased with the addition of the inhibitor up to the optimum amount (200 ppm) due to the decreased corrosion rate. Moreover, the use of As- Co leads to record signal of one electrode and prevent recording extra signals arising from two identical electrodes which confirmed by the statistical parameters. The As-Co made of Al alloys were more satisfactory for estimating inhibiting effect of RA/Ag NPs compared to Sy-Co. Besides, aqueous extract ofRanunculus Arvensis(RA) plant as reducing agent mediates the synthesis of silver nanoparticles (RA/Ag NPs). The prepared NPs have been elaborately characterized using Field-Emission Scanning Electron Microscopy (FESEM), X-Ray Diffraction (XRD) analysis, and Fourier-Transform Infrared Spectroscopy (FT-IR) that revealed suitable synthesize of the RA/Ag NPs.
Association of ovine gammaherpesvirus 2 with an outbreak of acute respiratory disease in dairy cattle
Authors: Headley Selwyn Arlington , Dall Agnol Alais Maria , Bessegato José Antonio , Frucchi Ana Paula Souza , Maturana Érika Fernandes Lopes , Rodrigues Rafael Vince , Xavier Ana Aparecida Correa , Alfieri Alice Fernandes , Alfieri Amauri Alcindo 
Published: April 2023

AbstractThis study investigated the cause of an outbreak of an acute respiratory disease syndrome followed by episodes of diarrhea in a dairy cattle herd from Southern Brazil. Deep nasal swabs (DNS) from asymptomatic calves, calves with pulmonary discomfort, and diarrheic calves after episodes of respiratory distress were used in molecular assays designed to detect the principal pathogens associated with bovine respiratory disease (BRD). Fecal samples were used for the molecular detection of bovine enteric disease agents. Pulmonary tissues from three calves and a cow that died were evaluated by molecular assays to identify 11 agents associated with the development of BRD. The intestinal and pulmonary fragments of one calf and the cow revealed atrophic enteritis and interstitial pneumonia by histopathology, respectively. Immunohistochemistry (IHC) identified intralesional antigens of a malignant catarrhal fever virus, genus Macavirus, within epithelial cells of the lungs and intestines. Molecular assays amplified ovine gammaherpesvirus 2 (OvGHV2) from most of the DNS, and the pulmonary and intestinal fragments from the animals that died, confirming that the Macavirus identified by IHC was OvGHV2. Concomitant pulmonary infections of OvGHV2 with bovine gammaherpesvirus 6 and bovine coronavirus were identified. Additionally, bovine viral diarrhea virus 1b and Aichivirus B were detected in the fecal samples. These findings demonstrated that OvGHV2, a Macavirus, was the disease agent most frequently (81.2%; 13/16) associated with singular pulmonary infections during this outbreak of BRD, suggesting that this virus may be another potential agent of respiratory disease of cattle.
Accurate real space iterative reconstruction (RESIRE) algorithm for tomography
Authors: Pham Minh , Yuan Yakun , Rana Arjun , Osher Stanley , Miao Jianwei 
Published: April 2023

AbstractTomography has made a revolutionary impact on the physical, biological and medical sciences. The mathematical foundation of tomography is to reconstruct a three-dimensional (3D) object from a set of two-dimensional (2D) projections. As the number of projections that can be measured from a sample is usually limited by the tolerable radiation dose and/or the geometric constraint on the tilt range, a main challenge in tomography is to achieve the best possible 3D reconstruction from a limited number of projections with noise. Over the years, a number of tomographic reconstruction methods have been developed including direct inversion, real-space, and Fourier-based iterative algorithms. Here, we report the development of a real-space iterative reconstruction (RESIRE) algorithm for accurate tomographic reconstruction. RESIRE iterates between the update of a reconstructed 3D object and the measured projections using a forward and back projection step. The forward projection step is implemented by the Fourier slice theorem or the Radon transform, and the back projection step by a linear transformation. Our numerical and experimental results demonstrate that RESIRE performs more accurate 3D reconstructions than other existing tomographic algorithms, when there are a limited number of projections with noise. Furthermore, RESIRE can be used to reconstruct the 3D structure of extended objects as demonstrated by the determination of the 3D atomic structure of an amorphous Ta thin film. We expect that RESIRE can be widely employed in the tomography applications in different fields. Finally, to make the method accessible to the general user community, the MATLAB source code of RESIRE and all the simulated and experimental data are available at https://zenodo.org/record/7273314.
Comparisons of efficacy and safety between preserved and preservative-free brimonidine tartrate in glaucoma and ocular hypertension: a parallel-grouped, randomized trial
Authors: Kim Ko Eun , Lee Chang Kyu , Shin Jonghoon , Kim Yuri , Rho Seungsoo 
Published: April 2023

AbstractThis multicenter (four institutions), randomized, investigator-masked, parallel-group clinical trial evaluated and compared the efficacy and safety of preservative-free and preserved brimonidine tartrate 0.15% in open-angle glaucoma and ocular hypertension. Sixty eyes of 60 patients with intraocular pressure (IOP) ≥ 15 mmHg diagnosed with open-angle glaucoma or ocular hypertension were randomized to preserved (n = 31) and preservative-free (n = 29) brimonidine groups. The enrolled eyes received brimonidine monotherapy three times daily. Main outcome measures were corneal/conjunctival staining score, ocular surface disease index, patient satisfaction score, drug tolerance, and drug adherence rate 12 weeks post first administration. Secondary outcome measurements included visual acuity, IOP, drug tolerance, tear-film break-up time, hemodynamic changes including blood pressure and heart rates, and ocular adverse events. After 12 weeks, both preserved and preservative-free groups showed similar IOP reduction, corneal and conjunctival staining scores, drug tolerance, and adherence rates. The preservative-free group showed significantly better tear-film break-up time and higher patient satisfaction regarding drug use and management. Systolic and diastolic blood pressure reductions during the 12 weeks were significantly lower in the preserved group than in the preservative-free group. Preservative-free brimonidine tartrate showed comparable efficacy and safety, better corneal tear film stability, and patient satisfaction than preserved brimonidine.
Characterizing quantum circuits with qubit functional configurations
Authors: Hu Zixuan , Kais Sabre 
Published: April 2023

AbstractWe develop a systematic framework for characterizing all quantum circuits with qubit functional configurations. The qubit functional configuration is a mathematical structure that can classify the properties and behaviors of quantum circuits collectively. Major benefits of classifying quantum circuits in this way include: 1. All quantum circuits can be classified into corresponding types; 2. Each type characterizes important properties (such as circuit complexity) of the quantum circuits belonging to it; 3. Each type contains a huge collection of possible quantum circuits allowing systematic investigation of their common properties. We demonstrate the theory’s application to analyzing the hardware-efficient ansatzes of variational quantum algorithms. For potential applications, the functional configuration theory may allow systematic understanding and development of quantum algorithms based on their functional configuration types.
Deformation characteristics test and mechanism of arbor taproot soil complex in rainforests
Authors: Du Peng , Zhou Dequan , Liu Xiaoling , Feng Yujie 
Published: April 2023

AbstractThis study performed large-scale single shear tests on Haikou red clay and arbor taproot to explore the anti-sliding effect and deformation characteristics of rainforest arbor roots under a shallow landslide. The law of root deformation and the root–soil interaction mechanism were revealed. The results indicated the significant reinforcing effect of arbor roots on the shear strength and ductility of soil, which increased with the decrease of normal stress. The soil reinforcement mechanism of arbor roots was attributed to their friction and retaining effects through an analysis of the movement of soil particles and the deformation pattern of roots during the shear process. The root morphology of arbors under shear failure could be described using an exponential function. Consequently, an advanced Wu model which better reflected the stress state and deformation of roots was proposed based on the concept of curve segment superposition. The results are believed to a reliable experimental and theoretical basis for the in-depth study of soil consolidation and sliding resistance effects of arbor roots, and further lay a foundation for the slope protection by arbor roots.
Exploring nurses' multitasking in clinical settings using a multimethod study
Authors: Kim Yoojin , Lee Mi Ja , Choi Mona , Cho Eunhee , Ryu Gi Wook 
Published: April 2023

AbstractNurses often multitask in the process of managing patient care and communicating with healthcare providers simultaneously within a limited time, which can negatively affect patient care and safety. In this multimethod research, we conducted a time and motion study to record nursing activities using eye trackers for 23 participants (9 nurses and 14 patients). The frequency and duration of single and multitasking activities were analyzed. Additionally, we conducted focus group interviews (FGIs) with 12 nurses (2–5 nurses per group) to further investigate their multitasking experience. The total duration of the eye tracker recordings was 3,399 min. Daily nursing activities comprised 23.7%, 21.1%, and 12.5% of scheduled medication, documentation, and monitoring and measurement, respectively. Among these activities, nurses mostly carry out scheduled medication, monitoring, and measurement together. Three themes emerged in the FGIs: "Being involved in every little task regarding patient care," "Getting swamped by the complexity of symptoms and problems of the patients at a given time," and "Getting interrupted at work too often." Nurses performed multiple activities while cooperating with other healthcare providers and providing care to patients. It is important to create an environment where nurses can focus on essential nursing activities to improve patient safety.
Epidemiological and clinical characterization of a population-based cohort of cutaneous malignant melanoma patients in the South Region of Portugal
Authors: Alves da Costa Filipa , Ramos Adriana , Bernardo Catarina , Cardoso Borges Fábio , Costa Miranda Ana ,   the ROR-Sul network
Published: April 2023

AbstractAn historical population-based cohort study was conducted aiming to estimate the incidence of cutaneous malignant melanoma in the South Region of Portugal between Jan 2016 and June 2017; to clinically characterize the diagnosed individuals; to describe instituted treatment; and to estimate survival outcomes. Data were extracted from a cancer registry (ROR-Sul) covering 4,800,000 inhabitants (46% of the Portuguese population) and included a total of 789 individuals meeting eligibility criteria. The crude incidence rate (18 months) of melanoma was 13.36/100,000 inhabitants and the Age-Standardized Incidence Rate per 100,000 World population was 9.65/100,000 inhabitants. The most common histological subtypes identified were superficial extension, followed by malignant melanoma and nodular melanoma. Most cases were diagnosed in stage I (50.39%), equally distributed by sex and with a median age of 65 years. During the study period, 174 recurrence events were recorded (23.45%) and recurrence-free survival rate was significantly lower in more advanced stages. Patients had a two-fold risk of recurrence/death when in presence of ulcerated tumors [adjusted hazard ratio (adj HR) = 2.28; 95% confidence interval (CI) 1.40–3.70]. Overall survival rate at 3-years was 80.54% (95% CI 77.58–83.15), higher than previous national reports, and considerably higher for individuals diagnosed at earlier stages (p < 0.001). We have also identified differential survival outcomes in stages II–III explained by the uptake of sentinel lymph node biopsy. The epidemiologic and clinical characteristics of malignant melanoma patients studied are consistent with international literature. The incidence and rates observed suggests additional public health campaigns are needed to modify behaviours of the Portuguese population and thus reduce their risk.
Association between human papillomavirus particle production and the severity of recurrent respiratory papillomatosis
Authors: Yamada Satoshi , Itoh Toshiya , Ikegami Taro , Imai Atsushi , Mochizuki Daiki , Nakanishi Hiroshi , Ishikawa Ryuji , Kita Junya , Nakamura Yuki , Takizawa Yoshinori , Okamura Jun , Noda Yoshihiro , Iwashita Toshihide , Hariyama Takahiko , Suzuki Mikio , Misawa Kiyoshi , Kawasaki Hideya 
Published: April 2023

AbstractRecurrent respiratory papillomatosis (RRP) has a wide range of severity. We investigate the relationship between human papillomavirus (HPV) particle production and severity of RRP. From September 2005 to June 2021, 68 RRP samples (from 29 patients) were included. HPV type was determined. HPV viral load, physical status, and demographic and clinical characteristics were assessed. Immunohistochemistry (IHC) was performed for p16, Ki-67, L1, and E4. We used NanoSuit-CLEM (correlative light and electron microscopy) and transmission electron microscopy (TEM) to examine the samples. The total number of surgeries in HPV-positive and HPV-negative cases were 3.78 (n = 55/68, range: 1–16) and 1.30 (n = 13/68, range: 1–3), respectively (p = 0.02). IHC showed that L1 and E4 were correlated and expressed on the tumour surface. NanoSuit-CLEM and TEM revealed HPV particles in L1-positive nuclei. L1 IHC-positive cases had a shorter surgical interval (p < 0.01) and more frequent surgeries (p = 0.04). P16 IHC, viral load, and physical status were not associated with disease severity. This study visualised HPV particle production in RRP for the first time. Persistent HPV particle infection was associated with severity. We suggest L1 IHC for evaluating RRP severity in addition to the Derkay score.
Thianthrene polymers as 4 V-class organic mediators for redox targeting reaction with LiMn2O4 in flow batteries
Authors: Hatakeyama-Sato Kan , Sadakuni Karin , Kitagawa Kan , Oyaizu Kenichi 
Published: April 2023

AbstractRedox targeting reaction is an emerging idea for boosting the energy density of redox-flow batteries: mobile redox mediators transport electrical charges in the cells, whereas large-density electrode-active materials are fixed in tanks. This study reports 4 V-class organic polymer mediators using thianthrene derivatives as redox units. The higher potentials than conventional organic mediators (up to 3.8 V) enable charging LiMn2O4 as an inorganic cathode offering a large theoretical volumetric capacity of 500 Ah/L. Soluble or nanoparticle polymer design is beneficial for suppressing crossover reactions (ca. 3% after 300 h), simultaneously contributing to mediation reactions. The successful mediation cycles observed by repeated charging/discharging steps indicate the future capability of designing particle-based redox targeting systems with porous separators, benefiting from higher energy density and lower cost.
Diagnostic accuracy of using multiple cytokines to predict aldosterone-producing adenoma
Authors: Qin Fei , Wen Hong , Zhong Xiaoge , Pan Yajin , Lai Xiaomei , Yang Tingting , Huang Jing , Yu Jie , Li Jianling 
Published: April 2023

AbstractHere, we aimed to study the important cytokines in plasma to identify the aldosterone-producing adenoma (APA). 19 unilateral primary aldosteronism (UPA) patients and 19 healthy people were divided into UPA group and Control group, and the serum of bilateral adrenal veins and inferior vena cava collected by adrenal blood sampling (AVS) in UPA patients and the serum from the healthy subjects were all used to detect multiple cytokines by Luminex immunoassays. Additionally, The UPA patients subjected to laparoscopic adrenalectomy were divided into different groups by pathological results for further study. According our results, IP-10, CXCL9 and RANTES were significantly higher in UPA group compared with control group, and the combination of the three cytokines have significant predictive power for predicting UPA, while the correlational analyses demonstrated that IP-10 and CXCL9 were positively correlated with BP and HR, while EGF was positively correlated with HDL. Additionally, IL-1b was suggested to be the most potential diagnostic biomarker to discriminate the APA and unilateral adrenal hyperplasia (UAH). The present findings might suggest a possibility of IP-10, CXCL9 and RANTES served as a sign to help UPA diagnosis and finally used to assist the diagnosis of APA, while IL-1b was suggested to be the most potential diagnostic biomarker to identify the APA from the UAH patients.
Intracellular bioaccumulation of the rare earth element Gadolinium in ciliate cells resulting in biogenic particle formation and excretion
Authors: Kohl Jana , Schweikert Michael , Klaas Norbert , Lemloh Marie-Louise 
Published: April 2023

AbstractCiliates are abundant unicellular organisms capable of resisting high concentrations of metal ions in the environment caused by various anthropogenic activities. Understanding the cellular pathways involved in resistance to and detoxification of elements is required to predict the impact of ciliates on environmental element cycles. Here, we investigated the so far unknown process of tolerance, cellular uptake and bioaccumulation of the emerging rare earth element gadolinium (Gd) in the common ciliate Tetrahymena pyriformis. Gd treatment results in the intracellular formation and excretion of biogenic Gd-containing particles. This cellular process effectively removes dissolved Gd from the organic growth medium by 53.37% within 72 h. Based on light and electron microscopic observations, we postulate a detoxification pathway: Cells take up toxic Gd3+ ions from the medium by endocytosis, process them into stable Gd-containing particles within food vacuoles, and exocytose them. Stable biogenic particles can be isolated, which are relatively homogeneous and have a diameter of about 3 µm. They consist of the elements Gd, C, O, P, Na, Mg, K, and Ca. These findings broaden the view of metal ion accumulation by protists and are of relevance to understand environmental elemental cycles and may inspire approaches for metal recovery or bioremediation.