bluuebunny/crossref_metadata_2025_split huggingface dataset:
A model of behavioural response to risk accurately predicts the statistical distribution of COVID-19 infection and reproduction numbers
Authors: Costello Fintan , Watts Paul , Howe Rita 
Published: February 2023

AbstractOne clear aspect of behaviour in the COVID-19 pandemic has been people’s focus on, and response to, reported or observed infection numbers in their community. We describe a simple model of infectious disease spread in a pandemic situation where people’s behaviour is influenced by the current risk of infection and where this behavioural response acts homeostatically to return infection risk to a certain preferred level. This homeostatic response is active until approximate herd immunity is reached: in this domain the model predicts that the reproduction rateRwill be centred around a median of 1, that proportional change in infection numbers will follow the standard Cauchy distribution with location and scale parameters 0 and 1, and that high infection numbers will follow a power-law frequency distribution with exponent 2. To test these predictions we used worldwide COVID-19 data from 1st February 2020 to 30th June 2022 to calculate$$95\%$$95%confidence interval estimates across countries for theseR, location, scale and exponent parameters. The resulting medianRestimate was$$95\%\; CI=[0.99, 1.01]$$95%CI=[0.99,1.01](predicted value 1) the proportional change location estimate was$$95\%\; CI=[-0.01, 0.02]$$95%CI=[-0.01,0.02](predicted value 0), the proportional change scale estimate was$$95\%\; CI=[0.99, 1.08]$$95%CI=[0.99,1.08](predicted value 1), and the frequency distribution exponent estimate was$$95\%\; CI=[1.97, 2.15]$$95%CI=[1.97,2.15](predicted value 2); in each case the observed estimate agreed with model predictions.
Harnessing the placebo effect to enhance emotion regulation effectiveness and choice
Authors: Shafir Roni , Israel Maya , Colloca Luana 
Published: February 2023

AbstractThe placebo effect demonstrates how positive expectancies shape the effectiveness of various treatments. Across studies, placebo treatments are interventions (creams, pills, etc.) that are presented to individuals as, and are learned to be, beneficial for them. This study tested whether placebo-induced expectancies can be harnessed to improve individuals’ internal emotion regulation attempts. Participants implemented two types of distraction, an emotion regulation strategy involving attentional disengagement, to attenuate fear of pain. In a typical conditioning paradigm, the placebo-distraction was introduced as an effective strategy (verbal suggestion) and was surreptitiously paired with reduced pain (conditioning), whereas the control-distraction was introduced as noneffective and was surreptitiously paired with increased pain. As predicted, we found that during a later test phase, where pain intensity was identical, the placebo-distraction resulted in reduced self-reported fear of pain, relative to the control-distraction. Moreover, we utilized a robust behavioral choice measure, demonstrating increased preferences for the placebo-distraction. We additionally tested whether these effects generalize to a different emotional context of fear of unpleasant pictures. In that context, the placebo-distraction was as effective as the control-distraction, but was substantially preferred. This study demonstrates that the placebo effect can be expanded to include individuals’ internal attempts to influence their conditions.
Propriety assessment model for life cycle operational global warming potential of apartment buildings in Korea using energy efficiency and energy effective area data
Authors: Kim Hyunsik , Lim Hyojin , Kim Jeonghwan , Roh Seungjun 
Published: February 2023

AbstractIn response to global warming, researchers worldwide are actively investigating various techniques and institutional frameworks to reduce the emission of greenhouse gases. Despite numerous life cycle assessment (LCA) studies indicating that global warming effects due to lifetime energy consumption are the greatest in the building operation stage, the absence of a standard global warming potential (GWP) report based on building energy usage makes it difficult to examine realistic GWP reduction directions. In South Korea, energy data for numerous buildings were collected through the Building Energy Efficiency Certification (BEEC) for several years, with data from apartment buildings receiving the most attention. GWP emissions were evaluated using the data through Green Standard for Energy and Environmental Design LCA. Here, we developed a model for apartment buildings to assess mutual propriety for GWP emissions (E) and energy effective area ratio (RE) during building operation to support the reduction of GWP emissions caused by lifetime operational energy consumption resulting from planning and design. We collected apartment BEEC data and used them to calculate the energy effective area ratio and GWP emissions of each building, which were then classified by energy use and source. Linear regression analysis was performed between RE and E for each classification, and the derived regression equation was developed as a GWP assessment model for apartments. The applicability of the proposed model was examined through a case study, which confirmed that the model can be used to determine design directions for reducing GWP emissions for every energy in apartments.
High growth temperature for AlN by jet stream gas flow metalorganic vapor phase epitaxy
Authors: Nagamatsu Kentaro , Miyagawa Takumi , Tomita Atsushi , Hirayama Hideki , Takashima Yuusuke , Naoi Yoshiki 
Published: February 2023

AbstractDeep ultraviolet light-emitting diodes have attracted considerable attention for realizing virus inactivation applications. The UV-LEDs use the AlN underlying layer and the plane sapphire substrate. However, the low growth temperature in AlN underlying layer is grown by limited growth temperature in conventional MOVPE, and high temperature is preferable for AlN growth. Furthermore, the AlN underlying layer has many dislocations owing to the active layer in the device region when the flat sapphire substrate was used with a dislocation value of > 109 cm−2. We showed the high-temperature crystal growth of AlN with a temperature of 1700 °C by high temperature and gas flow velocity MOVPE. The achieved dislocation density was ~ 4 × 108 cm−2. Additionally, this data means the low dislocation densities in the AlN layer with a growth time of only 15 min and a dislocation density of < 1 × 109 cm−2 are obtained. The AlN growth temperature exceeding 1550 °C decreases the growth rate. These results indicate desorption from the surface of the substrate in a hydrogen atmosphere. Furthermore, the characteristic dislocation behavior of AlN in high-temperature growth at 1700 °C was elucidated from TEM images.
Suppression of wetting transition on evaporative fakir droplets by using slippery superhydrophobic surfaces with low depinning force
Authors: Shamim Jubair A. , Takahashi Yukinari , Goswami Anjan , Shaukat Nadeem , Hsu Wei-Lun , Choi Junho , Daiguji Hirofumi 
Published: February 2023

AbstractThis study experimentally investigated the evaporation and wetting transition behavior of fakir droplets on five different microstructured surfaces. Diamond-like carbon was introduced as the substrate, and the influence of varying the width, height, and pitch of the micropillars was assessed. The experimental results showed that the interfacial properties of the surfaces change the evaporation behavior and the starting point of the wetting transition. An important result of this study is the demonstration of a slippery superhydrophobic surface with low depinning force that suppresses the transition from the Cassie–Baxter state to the Wenzel state for microdroplets less than 0.37 mm in diameter, without employing large pillar height or multiscale roughness. By selecting an appropriate pillar pitch and employing tapered micropillars with small pillar widths, the solid–liquid contact at the three-phase contact line was reduced and low depinning forces were obtained. The underlying mechanism by which slippery superhydrophobic surfaces suppress wetting transitions is also discussed. The accuracy of the theoretical models for predicting the critical transition parameters was assessed, and a numerical model was developed in the surface evolver to compute the penetration of the droplet bottom meniscus within the micropillars.
Spatiotemporal forecasting of vertical track alignment with exogenous factors
Authors: Kosukegawa Katsuya , Mori Yasukuni , Suyari Hiroki , Kawamoto Kazuhiko 
Published: February 2023

AbstractTo ensure the safety of railroad operations, it is important to monitor and forecast track geometry irregularities. A higher safety requires forecasting with higher spatiotemporal frequencies, which in turn requires capturing spatial correlations. Additionally, track geometry irregularities are influenced by multiple exogenous factors. In this study, a method is proposed to forecast one type of track geometry irregularity, vertical alignment, by incorporating spatial and exogenous factor calculations. The proposed method embeds exogenous factors and captures spatiotemporal correlations using a convolutional long short-term memory. The proposed method is also experimentally compared with other methods in terms of the forecasting performance. Additionally, an ablation study on exogenous factors is conducted to examine their individual contributions to the forecasting performance. The results reveal that spatial calculations and maintenance record data improve the forecasting of vertical alignment.
Study comparing the tribological behavior of propylene glycol and water dispersed with graphene nanopowder
Authors: Haribabu A. , Surakasi Raviteja , Thimothy P. , Khan Mohammad Amir , Khan Nadeem A. , Zahmatkesh Sasan 
Published: February 2023

AbstractNanofluids made up of propylene glycol, and water and graphene nanopowder dispersed throughout them are the primary focus of our study. Nanofluids were created by mixing propylene glycol and water in quantities of 100:0, 75:25, and 50:50. The essential fluids used in this experiment were propylene glycol and water. Graphene was dispersed in these three different base fluids at percentages of 0.25 and 0.5, respectively. This body of work's fundamental objective is to explore nanofluids' tribological behavior. This behavior was observed with a pin-on-disc device, and the impact for load on wear, coefficient of friction, and frictional force was investigated. The tests were conducted with weights ranging from 1 to 3 kg. It was revealed that as the load ascended, there was a reduction in the amount of wear, the coefficient of friction, and the frictional force for the most of the samples tested. Still, there was an increase in the amount of wear and friction coefficient, including the frictional force for some of the samples.
Pathogens associated with hospitalization due to acute lower respiratory tract infections in children in rural Ghana: a case–control study
Authors: Krumkamp Ralf , Kohsar Matin , Nolte Kolja , Hogan Benedikt , Eibach Daniel , Jaeger Anna , Akenten Charity Wiafe , Drosten Christian , Boahen Kennedy Gyau , Sarpong Nimako , Eckerle Isabella , Binger Tabea , Owusu-Dabo Ellis , May Jürgen , Kreuels Benno 
Published: February 2023

AbstractRespiratory infections are one of the most common causes of death among children under the age of five years. Data on prevalence and relevance of specific organisms in African children are still lacking. This case–control-study investigated prevalence and relevance of specific organisms in Ghanaian children admitted to hospital with symptoms of lower respiratory tract infection (LRTI). Pharyngeal swabs were taken and tested by PCR for 19 respiratory isolates. Adjusted odds ratios (aORs) were calculated to estimate associations between isolates and admission with LRTI. Population attributable fractions (PAFs) were calculated to assess the proportion of LRTI cases due to a particular pathogen. The study included 327 cases and 562 controls. We found associations between detection and admission for LRTI for influenza (aOR 98.6; 95% confidence interval (CI) 20.0–1789.6), respiratory syncytial virus (aOR 40.2; 95% CI 7.2–758.6), H. influenzae (aOR 4.1; 95% CI 2.2–7.9) and S. pneumoniae (aOR 2.4; 95% CI 1.7–3.4). PAFs ≥ 10% were observed for S. pneumoniae (30%; 95% CI 26–42), H. influenzae (10%; 95% CI 2–19) and influenza (10%; 95% CI 2–18). This study highlights the need for heightened surveillance and development of effective vaccines for respiratory pathogens other than SARS-CoV-2 in the future.
Research on the ring formation mechanism of magnesian flux pellets in rotary kiln
Authors: Guo Zongheng , Tian Tielei , Zhang Yuzhu 
Published: February 2023

AbstractThe forming of rings was a key problem of magnesian flux pellets in rotary kiln, which seriously limited production efficiency. Pellet powder and flux were the raw materials of the ring. Based on this, the bonding strength, melting behavior and microstructure of pellet powder and its mixed powder with flux were investigated. The influence of basicity (R = CaO/SiO2) on ring behavior of pellet powder was analyzed, and ring formation mechanism of magnesian flux pellets was clarified. The results showed that acid pellet powder was not easy to form rings due to lower bonding strength of briquettes. Due to changes in bonding process after mixing of flux, magnesian flux pellet powder produced ferrite and silicate liquid phase with lower melting point, which promoted diffusion and recrystallization of hematite and enhanced compressive strength of briquettes, then finally caused rings to form. Moreover, it is required to control roasting temperature below 1200 °C, which is a necessary condition for magnesian flux pellet powder to form an initial ring which was easy to be destroyed.
Genomic architecture of migration timing in a long-distance migratory songbird
Authors: de Greef Evelien , Suh Alexander , Thorstensen Matt J. , Delmore Kira E. , Fraser Kevin C. 
Published: February 2023

AbstractThe impact of climate change on spring phenology poses risks to migratory birds, as migration timing is controlled predominantly by endogenous mechanisms. Despite recent advances in our understanding of the underlying genetic basis of migration timing, the ways that migration timing phenotypes in wild individuals may map to specific genomic regions requires further investigation. We examined the genetic architecture of migration timing in a long-distance migratory songbird (purple martin, Progne subis subis) by integrating genomic data with an extensive dataset of direct migratory tracks. A moderate to large amount of variance in spring migration arrival timing was explained by genomics (proportion of phenotypic variation explained by genomics = 0.74; polygenic score R2 = 0.24). On chromosome 1, a region that was differentiated between migration timing phenotypes contained genes that could facilitate nocturnal flights and act as epigenetic modifiers. Overall, these results advance our understanding of the genomic underpinnings of migration timing.
Identification and analysis of the genetic integrity of different types of rice resources through SSR markers
Authors: Zhou Huiying , Li Shuhui , Liu Jin , Hu Jiaxiao , Le Si , Li Maomao 
Published: February 2023

AbstractSeed aging is the key factor leading to the loss of genetic integrity. In this study, the seeds of Dongxiang wild rice, Xianggu, 9194 and Nipponbare were kept in a plant incubator with constant temperature and humidity for artificial aging treatment. The genetic integrity of germplasm resources with different germination gradients were analyzed using 44 SSR markers. The results suggested that different accessions could be ranked in order of aging resistance from highest to lowest as common wild rice > Xianggu > 9194 > Nipponbare. In order to maintain the genetic diversity of rice, the population size for reproduction and regeneration should be between 60 and 140. After aging, the number of polymorphic alleles, the number of specific single plant, the ratio of polymorphic bands, the number of alleles, the number of effective alleles, gene diversity index and Shannon index of different accessions all decreased with the decrease of germination rate. The germination rate of 60% was the critical value to maintain genetic integrity. Besides, the genetic integrity of eighteen SSR markers was rapidly lost or significantly increased. The regions of these markers were closely related to seed viability or genetic integrity. This study provides a theoretical basis for determining the population size for reproduction and regeneration and the critical value of germination rate of rice resources.
Dynamic routing for efficient waste collection in resource constrained societies
Authors: Priyadarshi Marut , Maratha Meet , Anish Mohammad , Kumar Vaibhav 
Published: February 2023

AbstractWaste collection in developing nations faces multi-fold challenges, such as resource constraints and real-time changes in waste values, while finding the optimal routes. This paper attempts to address these challenges by modeling real-time waste values in smart bins and Collection Vehicles (CV). Further, waste value prioritized routes for coordinated CV, during various time intervals are modeled in a multi-agent environment for finding good routes. The CV, as agents, implement the formulated linear program to maximize the collected waste while minimizing the distance to the central depot. The city of Chandigarh, India, was divided into regions and the model was implemented to achieve significantly better performance in terms of waste collected in less distance and total bins covered when compared to the existing scenario. The stakeholders can use the outcomes to effectively plan the resources for better collection practices, which will have a positive impact on the environment.
Regorafenib is suitable for advanced colorectal cancer patients who have previously received trifluridine/tipiracil plus bevacizumab
Authors: Matsumoto Toshihiko , Ikoma Tatsuki , Yamamura Shogo , Miura Kou , Tsuduki Takao , Watanabe Takanori , Nagai Hiroki , Takatani Masahiro , Yasui Hisateru 
Published: February 2023

AbstractRegorafenib is a standard salvage line therapy used for advanced colorectal cancer (CRC). Recently, trifluridine/tipiracil (TFTD) plus bevacizumab also showed promising efficacy as a salvage line therapy for advanced CRC. However, the efficacy and safety of regorafenib for patients with advanced CRC who have previously received TFTD plus bevacizumab is unclear. We retrospectively collected clinicopathologic data from patients with advanced CRC who received regorafenib after TFTD plus bevacizumab in multiple institutions between April 2017 and June 2020.Thirty-four advanced CRC patients who received regorafenib were analyzed. The median age was 66.5 (range 43–81 years), 11 patients were male, and all had an ECOG performance status(PS) of 0 or 1. Twenty-two patients had left-sided tumors, 18 patients had RAS mutants, and 1 patient had a BRAF V600E mutation. The response rate was 0%, and the disease control rate was 31%. The median progression-free survival was 70 days (95% CI: 56–91), and the overall survival was 233 days (95% CI: 188–324). Treatment was discontinued in 32 patients, and 28 (82%) discontinued treatment due to progressive disease. The major grade 3 and4 toxicities were proteinurea (29%), hypertension (26%), hand-foot syndrome(15%), and platelet decrease (6%). Regorafenib after TFTD plus bevacizumab showed efficacy similar to that of the previous study, and no new adverse events were observed.
Open-source curation of a pancreatic ductal adenocarcinoma gene expression analysis platform (pdacR) supports a two-subtype model
Authors: Torre-Healy Luke A. , Kawalerski Ryan R. , Oh Ki , Chrastecka Lucie , Peng Xianlu L. , Aguirre Andrew J. , Rashid Naim U. , Yeh Jen Jen , Moffitt Richard A. 
Published: February 2023

AbstractPancreatic ductal adenocarcinoma (PDAC) is an aggressive disease for which potent therapies have limited efficacy. Several studies have described the transcriptomic landscape of PDAC tumors to provide insight into potentially actionable gene expression signatures to improve patient outcomes. Despite centralization efforts from multiple organizations and increased transparency requirements from funding agencies and publishers, analysis of public PDAC data remains difficult. Bioinformatic pitfalls litter public transcriptomic data, such as subtle inclusion of low-purity and non-adenocarcinoma cases. These pitfalls can introduce non-specificity to gene signatures without appropriate data curation, which can negatively impact findings. To reduce barriers to analysis, we have created pdacR (http://pdacR.bmi.stonybrook.edu, github.com/rmoffitt/pdacR), an open-source software package and web-tool with annotated datasets from landmark studies and an interface for user-friendly analysis in clustering, differential expression, survival, and dimensionality reduction. Using this tool, we present a multi-dataset analysis of PDAC transcriptomics that confirms the basal-like/classical model over alternatives.
A sulfide-sensor and a sulfane sulfur-sensor collectively regulate sulfur-oxidation for feather degradation by Bacillus licheniformis
Authors: Tang Chao , Li Jingjing , Shen Yuemeng , Liu Menghui , Liu Honglei , Liu Huaiwei , Xun Luying , Xia Yongzhen 
Published: February 2023

AbstractBacillus licheniformis MW3 degrades bird feathers. Feather keratin is rich in cysteine, which is metabolized to produce hazardous sulfide and sulfane sulfur. A challenge to B. licheniformis MW3 growing on feathers is to detoxify them. Here we identified a gene cluster in B. licheniformis MW3 to deal with these toxicity. The cluster contains 11 genes: the first gene yrkD encodes a repressor, the 8th and 9th genes nreB and nreC encode a two-component regulatory system, and the 10th and 11th genes encode sulfide: quinone reductase (SQR) and persulfide oxygenase (PDO). SQR and PDO collectively oxidize sulfide and sulfane sulfur to sulfite. YrkD sensed sulfane sulfur to derepress the 11 genes. The NreBC system sensed sulfide and further amplified the transcription of sqr and pdo. The two regulatory systems synergistically controlled the expression of the gene cluster, which was required for the bacterium to grow on feather. The findings highlight the necessity of removing sulfide and sulfane sulfur during feather degradation and may help with bioremediation of feather waste and sulfide pollution.
Genome-scale model of Pseudomonas aeruginosa metabolism unveils virulence and drug potentiation
Authors: Dahal Sanjeev , Renz Alina , Dräger Andreas , Yang Laurence 
Published: February 2023

AbstractPseudomonas aeruginosa is one of the leading causes of hospital-acquired infections. To decipher the metabolic mechanisms associated with virulence and antibiotic resistance, we have developed an updated genome-scale model (GEM) of P. aeruginosa. The model (iSD1509) is an extensively curated, three-compartment, and mass-and-charge balanced BiGG model containing 1509 genes, the largest gene content for any P. aeruginosa GEM to date. It is the most accurate with prediction accuracies as high as 92.4% (gene essentiality) and 93.5% (substrate utilization). In iSD1509, we newly added a recently discovered pathway for ubiquinone-9 biosynthesis which is required for anaerobic growth. We used a modified iSD1509 to demonstrate the role of virulence factor (phenazines) in the pathogen survival within biofilm/oxygen-limited condition. Further, the model can mechanistically explain the overproduction of a drug susceptibility biomarker in the P. aeruginosa mutants. Finally, we use iSD1509 to demonstrate the drug potentiation by metabolite supplementation, and elucidate the mechanisms behind the phenotype, which agree with experimental results.