bluuebunny/crossref_metadata_2025_split huggingface dataset:
Gut microbiome associated with low anterior resection syndrome after rectal cancer surgery
Authors: Kim Min Jung , Park Soyoung , Park Ji Won , Choi Jinsun , Kim Hyo Jun , Lim Han-Ki , Ryoo Seung-Bum , Park Kyu Joo , Ji Yosep , Jeong Seung-Yong 
Published: May 2023

AbstractThis study aimed to assess the likely association of gut microbiome with low anterior resection syndrome (LARS) symptoms. Postoperative stool samples from patients with minor or major LARS after sphincter-preserving surgery (SPS) for rectal cancer were collected and analyzed using 16S ribosomal RNA sequencing method. The symptom patterns of LARS were classified into two groups (PC1LARS, PC2LARS) using principal component analysis. The dichotomized sum of questionnaire items (sub1LARS, sub2LARS) was used to group patients according to the main symptoms. According to microbial diversity, enterotype, and taxa, PC1LARS and sub1LARS were associated with frequency-dominant LARS symptoms and patients, while PC2LARS and sub2LARS were grouped as incontinence-dominant LARS symptoms and patients. Butyricicoccus levels decreased while overall LARS scores increased. The α-diversity richness index Chao1 showed a significantly negative correlation in sub1LARS and a positive correlation in sub2LARS. In sub1LARS, the severe group showed a lower Prevotellaceae enterotype and higher Bacteroidaceae enterotype than the mild group. Subdoligranulum and Flavonifractor showed a negative and a positive correlation with PC1LARS, respectively, while showing a negative relationship with PC2LARS. Lactobacillus and Bifidobacterium were negatively correlated to PC1LARS. Frequency-dominant LARS had decreased diversity of gut microbiome and showed lower levels of lactic acid-producing bacteria.
The dominating mode of two competing massive modes of quadratic gravity
Authors: Chowdhury Avijit , Xavier Semin , Shankaranarayanan S. 
Published: May 2023

AbstractOver the last two decades, motivations for modified gravity have emerged from both theoretical and observational levels. f(R) and Chern-Simons gravity have received more attention as they are the simplest generalization. However, f(R) and Chern-Simons gravity contain only an additional scalar (spin-0) degree of freedom and, as a result, do not include other modes of modified theories of gravity. In contrast, quadratic gravity (also referred to as Stelle gravity) is the most general second-order modification to 4-D general relativity and contains a massive spin-2 mode that is not present in f(R) and Chern-Simons gravity. Using two different physical settings—the gravitational wave energy-flux measured by the detectors and the backreaction of the emitted gravitational radiation on the spacetime of the remnant black hole—we demonstrate that massive spin-2 mode carries more energy than the spin-0 mode. Our analysis shows that the effects are pronounced for intermediate-mass black holes, which are prime targets for LISA.
There are unique kinematics during locomotor transitions between level ground and stair ambulation that persist with increasing stair grade
Authors: Neuman Ross M. , Fey Nicholas P. 
Published: May 2023

AbstractHuman ambulation is typically characterized during steady-state isolated tasks (e.g., walking, running, stair ambulation). However, general human locomotion comprises continuous adaptation to the varied terrains encountered during activities of daily life. To fill an important gap in knowledge that may lead to improved therapeutic and device interventions for mobility-impaired individuals, it is vital to identify how the mechanics of individuals change as they transition between different ambulatory tasks, and as they encounter terrains of differing severity. In this work, we study lower-limb joint kinematics during the transitions between level walking and stair ascent and descent over a range of stair inclination angles. Using statistical parametric mapping, we identify where and when the kinematics of transitions are unique from the adjacent steady-state tasks. Results show unique transition kinematics primarily in the swing phase, which are sensitive to stair inclination. We also train Gaussian process regression models for each joint to predict joint angles given the gait phase, stair inclination, and ambulation context (transition type, ascent/descent), demonstrating a mathematical modeling approach that successfully incorporates terrain transitions and severity. The results of this work further our understanding of transitory human biomechanics and motivate the incorporation of transition-specific control models into mobility-assistive technology.
Task-relevant social cues affect whole-body approach-avoidance behavior
Authors: Welsch Robin , Hecht Heiko , Stins John 
Published: May 2023

AbstractPositively evaluated stimuli facilitate approach and negatively evaluated stimuli prompt avoidance responses, as typically measured by reaction time differences when moving a joystick toward the own body or away from it. In this study, we explore whether a whole-body response (forward and backward leaning can serve as a better indicator of approach-avoidance behavior; AA). Thirty-two subjects were presented with pictures of males and females with angry or happy facial expressions. Subjects had to perform approach or avoidance responses by leaning forward or backward, either based on the facial expression of the stimulus or the gender of the stimulus. Leaning responses were sensitive to angry faces for explicit decision cues. Here, angry facial expressions facilitated backward leaning but not when responding to the gender of the stimulus. We compare this to the established manual measure of AA and discuss our results with regard to response coding.
Time-related factors predicting a positive response to cardiac resynchronisation therapy in patients with heart failure
Authors: Wilczek Jacek , Jadczyk Tomasz , Wojakowski Wojciech , Gołba Krzysztof S. 
Published: May 2023

AbstractThis study aimed to identify time parameters predicting favourable CRT response. A total of 38 patients with ischemic cardiomyopathy, qualified for CRT implantation, were enrolled in the study. A 15% reduction in indexed end-systolic volume after 6 months was a criterion for a positive response to CRT. We evaluated QRS duration, measured from a standard ECG before and after CRT implantation and obtained from mapping with NOGA XP system (AEMM); and the delay, measured with the implanted device algorithm (DCD) and its change after 6 months (ΔDCD); and selected delay parameters between the left and right ventricles based on AEMM data. A total of 24 patients presented with a positive response to CRT versus 9 non-responders. After CRT implantation, we observed differences between responders and non-responders group in the reduction of QRS duration (31 ms vs. 16 ms), duration of paced QRS (123 ms vs. 142 ms), and the change of ΔDCDMaximum (4.9 ms vs. 0.44 ms) and ΔDCDMean (7.7 ms vs. 0.9 ms). The difference in selected parameters obtained during AEMM in both groups was related to interventricular delay (40.3 ms vs. 18.6 ms). Concerning local activation time and left ventricular activation time, we analysed the delays in individual left ventricular segments. Predominant activation delay of the posterior wall middle segment was associated with a better response to CRT. Some AEMM parameters, paced QRS time of less than 120 ms and reduction of QRS duration greater than 20 ms predict the response to CRT. ΔDCD is associated with favourable electrical and structural remodelling.Clinical trial registration: SUM No. KNW/0022/KB1/17/15.
Nutritional and immune-related indicators-based Nomogram for predicting overall survival of surgical oral tongue squamous cell carcinoma
Authors: Lin Yi-Wei , Kang Wei-Piao , Hong Chao-Qun , Huang Bin-Liang , Qiu Zi-Han , Liu Can-Tong , Chu Ling-Yu , Xu Yi-Wei , Guo Hai-Peng , Wu Fang-Cai 
Published: May 2023

AbstractOral tongue squamous cell carcinoma (OTSCC) is one of the most aggressive oral tumors. The aim of this study was to establish a nomogram to predict overall survival (OS) of TSCC patients after surgery. 169 TSCC patients who underwent surgical treatments in the Cancer Hospital of Shantou University Medical College were included. A nomogram based on Cox regression analysis results was established and internally validated using bootstrap resampling method. pTNM stage, age and total protein, immunoglobulin G, factor B and red blood cell count were identified as independent prognostic factors to create the nomogram. The Akaike Information Criterion and Bayesian Information Criterion of the nomogram were lower than those of pTNM stage, indicating a better goodness-of-fit of the nomogram for predicting OS. The bootstrap-corrected concordance index of nomogram was higher than that of pTNM stage (0.794 vs. 0.665,p = 0.0008). The nomogram also had a good calibration and improved overall net benefit. Based on the cutoff value obtained from the nomogram, the proposed high-risk group had poorer OS than low-risk group (p < 0.0001). The nomogram based on nutritional and immune-related indicators represents a promising tool for outcome prediction of surgical OTSCC.
Comparative toxicity of two neonicotinoid insecticides at environmentally relevant concentrations to telecoprid dung beetles
Authors: Cavallaro Michael C. , Hladik Michelle L. , Hittson Samantha , Middleton Greg , Hoback W. Wyatt 
Published: May 2023

AbstractDung beetles (Coleoptera: Scarabaeinae) frequently traverse agricultural matrices in search of ephemeral dung resources and spend extended periods of time burrowing in soil. Neonicotinoids are among the most heavily applied and widely detected insecticides used in conventional agriculture with formulated products designed for row crop and livestock pest suppression. Here, we determined the comparative toxicity of two neonicotinoids (imidacloprid and thiamethoxam) on dung beetles, Canthon spp., under two exposure profiles: direct topical application (acute) and sustained contact with treated-soil (chronic). Imidacloprid was significantly more toxic than thiamethoxam under each exposure scenario. Topical application LD50 values (95% CI) for imidacloprid and thiamethoxam were 19.1 (14.5–25.3) and 378.9 (200.3–716.5) ng/beetle, respectively. After the 10-day soil exposure, the measured percent mortality in the 3 and 9 µg/kg nominal imidacloprid treatments was 35 ± 7% and 39 ± 6%, respectively. Observed mortality in the 9 µg/kg imidacloprid treatment was significantly greater than the control (p = 0.04); however, the 3 µg/kg imidacloprid dose response may be biologically relevant (p = 0.07). Thiamethoxam treatments had similar mortality as the controls (p > 0.8). Environmentally relevant concentrations of imidacloprid measured in airborne particulate matter and non-target soils pose a potential risk to coprophagous scarabs.
Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables
Authors: Kumar Mridul , Saifi Zeeshan , Krishnananda Soami Daya 
Published: May 2023

AbstractThis paper presents a simple method for detecting both biotic and abiotic stress in plants. Stress levels are measured based on the increase in nutrient uptake by plants as a mechanism of self-defense when under stress. A continuous electrical resistance measurement was used to estimate the rate of change of nutrients in agarose as the growth medium for Cicer arietinum (Chickpea) seeds. To determine the concentration of charge carriers in the growth medium, Drude’s model was used. For identifying anomalies and forecasting plant stress, two experiments were conducted and outliers were found in electrical resistance and relative changes in carrier concentration. Anomaly in the first iteration was detected by applying k-Nearest Neighbour, One Class Support Vector Machine and Local Outlier Factor in unsupervised mode on electrical resistance data. In the second iteration, the neural network-based Long Short Term Memory method was used on the relative change in the carrier concentration data. As a result of the change in resistance of growth media during stress, nutrient concentrations shifted by 35%, as previously reported. Farmers who cater to small communities around them and are most affected by local and global stress factors can use this method of forecasting.
Risk assessment of substance use disorders based on the human leukocyte antigen (HLA)
Authors: James Lisa M. , Georgopoulos Apostolos P. 
Published: May 2023

AbstractSubstance use disorders (SUDs) are common and costly conditions that are partially attributable to genetic factors. In light of immune system influences on neural and behavioral aspects of addiction, the present study evaluated the influence of genes involved in the human immune response, human leukocyte antigen (HLA), on SUDs. We used an immunogenetic epidemiological approach to evaluate associations between the population frequencies of 127 HLA alleles and the population prevalences of six SUDs (alcohol, amphetamine, cannabis, cocaine, opioid, and “other” dependence) in 14 countries of Continental Western Europe to identify immunogenetic profiles of each SUD and evaluate their associations. The findings revealed two primary groupings of SUDs based on their immunogenetic profiles: one group comprised cannabis and cocaine, whereas the other group comprised alcohol, amphetamines, opioids, and “other” dependence. Since each individual possesses 12 HLA alleles, the population HLA-SUD scores were subsequently used to estimate individual risk for each SUD. Overall, the findings highlight similarities and differences in immunogenetic profiles of SUDs that may influence the prevalence and co-occurrence of problematic SUDs and may contribute to assessment of SUD risk of an individual on the basis of their HLA genetic makeup.
Nationwide analysis of hospital admissions and outcomes of patients with SARS-CoV-2 infection in Austria in 2020 and 2021
Authors: Zajic Paul , Hiesmayr Michael , Bauer Peter , Baron David M. , Gruber Anastasiia , Joannidis Michael , Posch Martin , Metnitz Philipp G. H. 
Published: May 2023

AbstractThis retrospective study evaluated temporal and regional trends of patient admissions to hospitals, intensive care units (ICU), and intermediate care units (IMCU) as well as outcomes during the COVID-19 pandemic in Austria. We analysed anonymous data from patients admitted to Austrian hospitals with COVID-19 between January 1st, 2020 and December 31st, 2021. We performed descriptive analyses and logistic regression analyses for in-hospital mortality, IMCU or ICU admission, and in-hospital mortality following ICU admission. 68,193 patients were included, 8304 (12.3%) were primarily admitted to ICU, 3592 (5.3%) to IMCU. Hospital mortality was 17.3%; risk factors were male sex (OR 1.67, 95% CI 1.60–1.75, p < 0.001) and high age (OR 7.86, 95% CI 7.07–8.74, p < 0.001 for 90+ vs. 60–64 years). Mortality was higher in the first half of 2020 (OR 1.15, 95% CI 1.04–1.27, p = 0.01) and the second half of 2021 (OR 1.11, 95% CI 1.05–1.17, p < 0.001) compared to the second half of 2020 and differed regionally. ICU or IMCU admission was most likely between 55 and 74 years, and less likely in younger and older age groups. We find mortality in Austrian COVID-19-patients to be almost linearly associated with age, ICU admission to be less likely in older individuals, and outcomes to differ between regions and over time.
Reactivation of corticogenesis-related transcriptional factors BCL11B and SATB2 after ischemic lesion of the adult mouse brain
Authors: Srakočić Sanja , Gorup Dunja , Kutlić Dominik , Petrović Ante , Tarabykin Victor , Gajović Srećko 
Published: May 2023

AbstractThe aim of this study was to characterize expression of corticogenesis-related transcription factors BCL11B and SATB2 after brain ischemic lesion in the adult mice, and to analyze their correlation to the subsequent brain recovery. Ischemic brain lesion was induced by transient middle cerebral artery occlusion followed by reperfusion, and the animals with ischemic lesion were compared to the sham controls. Progression of the brain damage and subsequent recovery was longitudinally monitored structurally, by magnetic resonance imaging, and functionally, by neurological deficit assessment. Seven days after the ischemic injury the brains were isolated and analyzed by immunohistochemistry. The results showed higher expression in the brain of both, BCL11B and SATB2 in the animals with ischemic lesion compared to the sham controls. The co-expression of both markers, BCL11B and SATB2, increased in the ischemic brains, as well as the co-expression of BCL11B with the beneficial transcriptional factor ATF3 but not its co-expression with detrimental HDAC2. BCL11B was mainly implicated in the ipsilateral and SATB2 in the contralateral brain hemisphere, and their level in these regions correlated with the functional recovery rate. The results indicate that the reactivation of corticogenesis-related transcription factors BCL11B and SATB2 is beneficial after brain ischemic lesion.
Intermunicipal travel networks of Mexico during the COVID-19 pandemic
Authors: Fontanelli Oscar , Guzmán Plinio , Meneses-Viveros Amilcar , Hernández-Alvarez Alfredo , Flores-Garrido Marisol , Olmedo-Alvarez Gabriela , Hernández-Rosales Maribel , Anda-Jáuregui Guillermo de 
Published: May 2023

AbstractHuman mobility networks are widely used for diverse studies in geography, sociology, and economics. In these networks, nodes usually represent places or regions and links refer to movement between them. They become essential when studying the spread of a virus, the planning of transit, or society’s local and global structures. Therefore, the construction and analysis of human mobility networks are crucial for a vast number of real-life applications. This work presents a collection of networks that describe the human travel patterns between municipalities in Mexico in the 2020–2021 period. Using anonymized mobile location data, we constructed directed, weighted networks representing the volume of travels between municipalities. We analysed changes in global, local, and mesoscale network features. We observe that changes in these features are associated with factors such as COVID-19 restrictions and population size. In general, the implementation of restrictions at the start of the COVID-19 pandemic in early 2020, induced more intense changes in network features than later events, which had a less notable impact in network features. These networks will result very useful for researchers and decision-makers in the areas of transportation, infrastructure planning, epidemic control and network science at large.
Red dichromatic imaging improves visibility of bleeding during gastric endoscopic submucosal dissection
Authors: Oka Kohei , Iwai Naoto , Okuda Takashi , Tsuji Toshifumi , Sakai Hiroaki , Hattori Chie , Taniguchi Masashi , Hara Tasuku , Komaki Toshiyuki , Sakagami Junichi , Kagawa Keizo , Dohi Osamu , Itoh Yoshito 
Published: May 2023

AbstractBleeding frequently occurs during gastric endoscopic submucosal dissection (ESD) and bleeding points are sometimes difficult to detect. Red dichromatic imaging (RDI) was recently developed to improve the visibility of bleeding. Our study aimed at examining the efficacy of RDI in improving the visibility of bleeding during gastric ESD. We retrospectively evaluated the visibility score and color difference of bleeding spot during gastric ESD during September 2020–January 2021. The visibility score was evaluated as four numeric values by operators, and the color difference between the bleeding spot and surroundings was evaluated using RDI and white light imaging (WLI). A further analysis to evaluate bleeding characteristics was performed to evaluate the possible beneficial effects of RDI. Twenty patients with a total of 85 bleedings were analyzed. The mean visibility score in RDI was significantly higher than that in WLI (3.69 ± 0.60 vs 3.20 ± 0.84, p < 0.01). The color difference with RDI was also significantly higher than that with WLI (19.51 ± 15.18 vs 14.80 ± 7.41, p < 0.01). Furthermore, in the bleedings with a higher visibility score in RDI, the color difference in RDI was significantly higher than that in WLI (23.99 ± 19.29 vs 14.33 ± 7.08, p < 0.01). The multivariate analysis of visibility scores revealed that submergence of bleeding points was independently associated with the superiority of RDI (odds ratio 10.35, 95% confidence interval: 2.76–38.81, p < 0.01). Our study demonstrates that RDI can improve the visibility of bleeding during gastric ESD.
Shared community effects and the non-genetic maternal environment shape cortisol levels in wild chimpanzees
Authors: Tkaczynski Patrick J. , Mafessoni Fabrizio , Girard-Buttoz Cédric , Samuni Liran , Ackermann Corinne Y. , Fedurek Pawel , Gomes Cristina , Hobaiter Catherine , Löhrich Therese , Manin Virgile , Preis Anna , Valé Prince D. , Wessling Erin G. , Wittiger Livia , Zommers Zinta , Zuberbuehler Klaus , Vigilant Linda , Deschner Tobias , Wittig Roman M. , Crockford Catherine 
Published: May 2023

AbstractMechanisms of inheritance remain poorly defined for many fitness-mediating traits, especially in long-lived animals with protracted development. Using 6,123 urinary samples from 170 wild chimpanzees, we examined the contributions of genetics, non-genetic maternal effects, and shared community effects on variation in cortisol levels, an established predictor of survival in long-lived primates. Despite evidence for consistent individual variation in cortisol levels across years, between-group effects were more influential and made an overwhelming contribution to variation in this trait. Focusing on within-group variation, non-genetic maternal effects accounted for 8% of the individual differences in average cortisol levels, significantly more than that attributable to genetic factors, which was indistinguishable from zero. These maternal effects are consistent with a primary role of a shared environment in shaping physiology. For chimpanzees, and perhaps other species with long life histories, community and maternal effects appear more relevant than genetic inheritance in shaping key physiological traits.
Fission yeast Srr1 and Skb1 promote isochromosome formation at the centromere
Authors: Mongia Piyusha , Toyofuku Naoko , Pan Ziyi , Xu Ran , Kinoshita Yakumo , Oki Keitaro , Takahashi Hiroki , Ogura Yoshitoshi , Hayashi Tetsuya , Nakagawa Takuro 
Published: May 2023

AbstractRad51 maintains genome integrity, whereas Rad52 causes non-canonical homologous recombination leading to gross chromosomal rearrangements (GCRs). Here we find that fission yeast Srr1/Ber1 and Skb1/PRMT5 promote GCRs at centromeres. Genetic and physical analyses show that srr1 and skb1 mutations reduce isochromosome formation mediated by centromere inverted repeats. srr1 increases DNA damage sensitivity in rad51 cells but does not abolish checkpoint response, suggesting that Srr1 promotes Rad51-independent DNA repair. srr1 and rad52 additively, while skb1 and rad52 epistatically reduce GCRs. Unlike srr1 or rad52, skb1 does not increase damage sensitivity. Skb1 regulates cell morphology and cell cycle with Slf1 and Pom1, respectively, but neither Slf1 nor Pom1 causes GCRs. Mutating conserved residues in the arginine methyltransferase domain of Skb1 greatly reduces GCRs. These results suggest that, through arginine methylation, Skb1 forms aberrant DNA structures leading to Rad52-dependent GCRs. This study has uncovered roles for Srr1 and Skb1 in GCRs at centromeres.