bluuebunny/crossref_metadata_2025_split huggingface dataset:
3D macro- and microfabric analyses of Neoproterozoic diamictites from the Valjean Hills, California (United States)
Authors: Kettler C. , Phillips E. , Pichler K. , Smrzka D. , Vandyk T. M. , Le Heron D. P. 
Published: May 2023

The Cryogenian interval (720–635 Ma) is famous for a rich archive of diamictites, many of which were deposited during glaciations. Classic examples are exposed in the Kingston Peak Formation of the Valjean Hills, near Death Valley (United States), with previous work pointing to multiple glacial cycles in other outcrop belts. Within any glacial period, diamictites are widespread, and in addition, their mechanics of deposition are highly variable. Some are massive in appearance at outcrop or in hand specimens and apparently lack any information that allows their mode of emplacement to be elucidated. Yet, the correct interpretation for deep-time successions in this area is especially important, since it is debated whether the diamictites are either associated with a tectonically driven origin, associated with rifting at the south-western Laurentian margin alongside slope-controlled gravitational mass movement, or predominantly deposited as (sub)glacial diamictites. In this paper, we demonstrate how diamictite texture can be objectively quantified based on clast orientations, at both macroscale and microscale (micromorphology), guiding interpretations. Our method is based on a technique used for Quaternary sediments, by mapping the apparent longest axes of skeleton grains (ranging from fine-grained sand to fine-grained pebbles) in oriented thin sections and reconstructing their microfabric in a 3D space coupled with macrofabric data for each diamictite. In this way, we could identify a bimodal signal in the orientation of the longest axes for each sample. Evidence for shearing and soft sediment deformation supports either subaqueous or subglacial deposition with deformation induced by basal sliding with a paleoflow directed toward the southeast. Our combined approach of micro- and macrofabric analyses can also encourage acquiring accurate fabric data for seemingly structureless diamictites from other deep-time rock archives in an objective manner.
Effects of turning rainforest into oil-palm plantations on silicon pools in soils within the first 20 years after the transformation
Authors: Greenshields Britta , von der Lühe Barbara , Hughes Harold , Tjoa Aiyen , Hennings Nina , Sauer Daniela 
Published: May 2023

Potential effects of land-use/land-cover (LULC) transformation from lowland rainforest into oil-palm plantations on silicon (Si) pools in tropical soils remain poorly understood, although appropriate levels of plant-available Si in soils may contribute to maintain high crop yields and increase the vitality and drought resistance of oil palms. Therefore, the aim of our study was to identify possible effects of such LULC change on soil Si pools. For this purpose, we compared soil Si pools under lowland rainforest and ca. 20 year-old oil-palm plantations in Jambi Province, Indonesia. The investigated soils were Acrisols and Stagnosols, in which we quantified six different soil Si pools following a sequential extraction procedure to evaluate, whether 20 years of oil-palm cultivation has led to a depletion of these soil Si pools. The considered pools included mobile Si, adsorbed Si, Si bound in soil organic matter (SOM), Si included in pedogenic oxides and hydroxides, and Si in amorphous silica of biogenic and pedogenic origin. Finally, we also determined total Si. All oil-palm plantations established on sloping terrain and Acrisols only showed decreased Si stocks of mobile Si, adsorbed Si and SOM-bound Si; those established in floodplains and Stagnosols had decreased stocks of SOM-bound Si and biogenic-amorphous silica. Lower Si stocks were mostly attributed to a missing “stable” phytolith pool in the subsoil and less organic matter in topsoils under oil-palm plantations. When comparing well-drained and riparian areas, flooding seemed to increase phytolith dissolution. We conclude that 20 years of oil-palm cultivation has not yet led to a significant depletion of soil Si pools. As topsoils comprise the highest concentrations of SOM-bound Si and Si in amorphous silica of biogenic origin but are susceptible to erosion and surface runoff under managed oil-palm plantations, it would be advisable to instate specific management practices that maintain organic-rich and well-aired topsoils on oil-palm plantations.
The burden of cardiovascular diseases attributable to metabolic risk factors and its change from 1990 to 2019: a systematic analysis and prediction
Authors: Wang Huaigen , Liu Jing , Feng Yunfei , Ma Aiqun , Wang Tingzhong 
Published: May 2023

BackgroundMetabolic disorders are the most important risk factors for cardiovascular diseases (CVDs). The purpose of this study was to systematically analyze and summarize the most recent data by age, sex, region, and time, and to forecast the future burden of diseases.MethodsData on the burden of CVDs associated with metabolic risk factors were obtained from the Global Burden of Disease (GBD) Study 2019; and then the burden of disease was assessed using the numbers and age-standardized rates (ASR) of deaths, years of life lost (YLLs), years of life lived with disability (YLDs), and disability-adjusted life-years (DALYs) and analyzed for temporal changes, differences in age, region, sex, and socioeconomic aspects; finally, the burden of disease was predicted using an autoregressive integrated moving average (ARIMA) model.ResultsFrom 1990 to 2019, the numbers of deaths, DALYs, YLDs, and YLLs attributed to metabolic risk factors increased by 59.3%, 51.0%, 104.6%, and 47.8%, respectively. The ASR decreased significantly. The burden of metabolic risk factor-associated CVDs was closely related to socioeconomic position and there were major geographical variations; additionally, men had a significantly greater disease burden than women, and the peak shifted later based on the age group. We predicted that the numbers of deaths and DALYs would reach 16.5 million and 324.8 million, respectively, by 2029.ConclusionsThe global burden of CVDs associated with metabolic risk factors is considerable and still rising, and more effort is needed to intervene in metabolic disorders.
Targeted modification of CmACO1 by CRISPR/Cas9 extends the shelf-life of Cucumis melo var. reticulatus melon
Authors: Nonaka Satoko , Ito Maki , Ezura Hiroshi 
Published: May 2023

The gaseous plant hormone ethylene is a regulator of fruit shelf-life, one of the essential traits in fruits. Extending fruit shelf-life reduces food loss, thereby expected to contribute to food security. The enzyme 1-aminocyclopropane-1-carboxylic acid oxidase (ACO) is the final step of the ethylene production pathway. Its suppression via antisense technology has been demonstrated to extend the shelf-life of melon, apple, and papaya. Genome editing technology is an innovative technique for plant breeding. Because the genome editing technology would not leave the exogenous genes in the final crop products, the crops via genome editing can be considered non-genetically modified yields; compared to conventional breeding, such as mutation breeding, the breeding term would be expected to be relatively short. These points include the advantage of this technique in utilization for commercial applications. We attempted to extend the shelf-life of the Japanese luxury melon (Cucumis melo var. reticulatus, ‘Harukei-3’) via modification of the ethylene synthesis pathway with the genome editing technology, CRISPR/Cas9 system. The Melonet-DB (https://melonet-db.dna.affrc.go.jp/ap/top) showed that the melon genome had the five CmACOs and the gene CmACO1 predominantly expressed in harvested fruits. From this information, CmACO1 was expected to be a key gene for shelf-life in melons. Based on this information, the CmACO1 was selected as the target of the CRISPR/Cas9 system and introduced the mutation. The final product of this melon did not have any exogenous genes. The mutation was inherited for at least two generations. In the T2 generation, the fruit phenotypes 14 days after harvest were as follows: ethylene production was reduced to one-tenth that of the wild type, pericarp colour remained green, and higher fruit firmness. Early fermentation of the fresh fruit was observed in the wild-type fruit but not in the mutant. These results show that CmACO1 knockout via CRISPR/Cas9 extended the melon’s shelf-life. Moreover, our results suggest that genome editing technology would reduce food loss and contribute to food security.
Chromosome-scale assembly and quantitative trait locus mapping for major economic traits of the Culter alburnus genome using Illumina and PacBio sequencing with Hi-C mapping information
Authors: Liu Shili , Zheng Jianbo , Li Fei , Chi Meili , Cheng Shun , Jiang Wenping , Liu Yinuo , Gu Zhimin , Zhao Jinliang 
Published: May 2023

Topmouth culter (Culter alburnus) is an economically important freshwater fish with high nutritional value. However, its potential genetic advantages have not been fully exploited. Therefore, we aimed to determine the genome sequence of C. alburnus and examine quantitative trait loci (QTLs) related to major economic traits. The results showed that 24 pseudochromosomes were anchored by 914.74 Mb of the C. alburnus genome sequence. De novo sequencing identified 31,279 protein-coding genes with an average length of 8507 bp and average coding sequ ence of 1115 bp. In addition, a high-density genetic linkage map consisting of 24 linkage groups was constructed based on 353,532 high-quality single nucleotide polymorphisms and 4,710 bin markers. A total of 28 QTLs corresponding to 11 genes, 26 QTLs corresponding to 11 genes, and 12 QTLs corresponding to 5 genes were identified for sex, intermuscular spine number and body weight traits, respectively. In this study, we assembled an accurate and nearly complete genome of C. alburnus by combining Illumina, PacBio, and high-throughput Chromosome conformation capture (Hi-C) technologies. In addition, we identified QTLs that explained variances in intermuscular spine number, body weight, and sex differences in C. alburnus. These genetic markers or candidate genes associated with growth traits provide a basis for marker-assisted selection in C. alburnus.
Prognostic immunogenic characteristics of iron pendant disease modifiers in colon cancer
Authors: Wang Xian , Meng Qingyu , Chen Yawen , Zhang Yanjun , Huang Xiaohui , Xiang Longquan , Kong Haiyang , Wang Chunxi , Wang Xueyang , Zhang Dekang 
Published: May 2023

BackgroundWe explored the prognostic and immunogenic characteristics of iron pendant disease regulators in colon cancer to provide a scientific basis for the prediction of tumor prognosis-related markers and potential immunotherapeutic drug targets.MethodsRNA sequencing and matched complete clinical information of colon cancer (COAD) were retrieved from the UCSC Xena database, and genomic and transcriptomic data of colon cancer from the TCGA database were downloaded. Then univariate and multifactorial Cox regression were used to process these data. The prognostic factors were analyzed by single-factor and multi-factor Cox regression, followed by Kaplan-Meier survival curves with the aid of R software “survival” package. Then we use FireBrowse online analysis tool to analyze the expression variation of all cancer genes, and draw a histogram according to the influencing factors to predict the 1, 3, and 5 year survival rates of patients.ResultsThe results show that age, tumor stage and iron death score were significantly correlated with prognosis (p&lt;0.05). Further multivariate cox regression analysis confirmed that age, tumor stage and iron death score were still significantly correlated with prognosis (p&lt;0.05); The calibration curve results show that the deviation between the predicted values of 1 year, 3 years and 5 years and the diagonal of the figure is very small; the ROC curve results show that the AUC values of the 1-year and 5-year ROC curves of the bar graph are high; the DCA curve results show that the net yield of the bar graph is the largest; The scores of T cells and B cells in the high iron death score group were significantly lower than those in the low iron death score group, and the activities of immune related pathways were significantly reduced. There was a significant difference in the iron death score between the iron death molecular subtype and the gene cluster subtype.ConclusionsThe model showed a superior response to immunotherapy in the high-risk group, revealing a potential relationship between iron death and tumor immunotherapy, which will provide new ideas for the treatment and prognostic assessment of colon cancer patients.
Tuberculosis infection following immune checkpoint inhibitor treatment for advanced cancer: a case report and literature review
Authors: Lin Chen , Xu Guixiang , Gao Shuyan , Feng Tao , Li Shuang 
Published: May 2023

ObjectiveTo investigate the clinical features of active tuberculosis (TB) infection due to immune checkpoint inhibitors (ICIs) treatment in patients with advanced cancer.MethodsWe report the diagnosis and treatment of a case of pulmonary malignancy (squamous cell carcinoma, cT4N3M0 IIIC), secondary to active TB infection following ICIs therapy. Moreover, we summarize and analyze other related cases collected from the China National Knowledge Infrastructure (CNKI), Wanfang Database, PubMed, the Web of Science, and EMBASE (up to October 2021).ResultsA total of 23 patients, including 20 males and 3 females who were aged 49-87 years with a median age of 65 years, were included in the study. Twenty-two patients were diagnosed by Mycobacterium tuberculosis culture or DNA polymerase chain reaction (PCR), while the remaining patient was diagnosed by tuberculin purified protein derivative and pleural biopsy. One case had an interferon-gamma release assay (IGRA) to rule out latent TB infection prior to the application of ICI. Fifteen patients received an anti-tuberculosis regimen. Among the 20 patients with a description of clinical regression, 13 improved and 7 died. Seven of the patients who improved were treated with ICI again and four of them did not experience a recurrence or worsening of TB. The case diagnosed in our hospital also improved after receiving anti-TB treatment after stopping ICI therapy, and continued chemotherapy on the basis of anti-TB treatment, and his condition is relatively stable at present.ConclusionDue to the lack of specificity of TB infection following ICIs therapy, patients should be followed for fever and respiratory symptoms for 6.3 months after drug administration. It is recommended that IGRA should be performed before ICIs therapy and the development of TB during immunotherapy in patients who are positive in IGRA should be closely monitored. The symptoms of TB in most patients can be improved with ICIs withdrawal and anti-TB treatment, but there is still a need to be alert to the potentially fatal risk of TB.
Behavioral and neural underpinnings of empathic characteristics in a Humanitude-care expert
Authors: Sato Wataru , Nakazawa Atsushi , Yoshikawa Sakiko , Kochiyama Takanori , Honda Miwako , Gineste Yves 
Published: May 2023

BackgroundHumanitude approaches have shown positive effects in elderly care. However, the behavioral and neural underpinnings of empathic characteristics in Humanitude-care experts remain unknown.MethodsWe investigated the empathic characteristics of a Humanitude-care expert (YG) and those of age-, sex-, and race-matched controls (n = 13). In a behavioral study, we measured subjective valence and arousal ratings and facial electromyography (EMG) of the corrugator supercilii and zygomatic major muscles while participants passively observed dynamic facial expressions associated with anger and happiness and their randomized mosaic patterns. In a functional magnetic resonance imaging (MRI) study, we measured brain activity while participants passively observed the same dynamic facial expressions and mosaics. In a structural MRI study, we acquired structural MRI data and analyzed gray matter volume.ResultsOur behavioral data showed that YG experienced higher subjective arousal and showed stronger facial EMG activity congruent with stimulus facial expressions compared with controls. The functional MRI data demonstrated that YG showed stronger activity in the ventral premotor cortex (PMv; covering the precentral gyrus and inferior frontal gyrus) and posterior middle temporal gyrus in the right hemisphere in response to dynamic facial expressions versus dynamic mosaics compared with controls. The structural MRI data revealed higher regional gray matter volume in the right PMv in YG than in controls.ConclusionThese results suggest that Humanitude-care experts have behavioral and neural characteristics associated with empathic social interactions.
Effect of protective lung ventilation on pulmonary complications after laparoscopic surgery: a meta-analysis of randomized controlled trials
Authors: Sun Menglin , Jia Ruolin , Wang Lijuan , Sun Daqi , Wei Mingqian , Wang Tao , Jiang Lihua , Wang Yuxia , Yang Bo 
Published: May 2023

IntroductionCompared with traditional open surgery, laparoscopic surgery is widely used in surgery, with the advantages of being minimally invasive, having good cosmetic effects, and having short hospital stays, but in laparoscopic surgery, pneumoperitoneum and the Trendelenburg position can cause complications, such as atelectasis. Recently, several studies have shown that protective lung ventilation strategies are protective for abdominal surgery, reducing the incidence of postoperative pulmonary complications (PPCs). Ventilator-associated lung injury can be reduced by protective lung ventilation, which includes microtidal volume (4–8 mL/kg) ventilation and positive end-expiratory pressure (PEEP). Therefore, we used randomized, controlled trials (RCTs) to assess the results on this topic, and RCTs were used for meta-analysis to further evaluate the effect of protective lung ventilation on pulmonary complications in patients undergoing laparoscopic surgery.MethodsIn this meta-analysis, we searched the relevant literature contained in six major databases—CNKI, CBM, Wanfang Medical, Cochrane, PubMed, and Web of Science—from their inception to October 15, 2022. After screening the eligible literature, a randomized, controlled method was used to compare the occurrence of postoperative pulmonary complications when a protective lung ventilation strategy and conventional lung ventilation strategy were applied to laparoscopic surgery. After statistical analysis, the results were verified to be statistically significant.ResultsTwenty-three trials were included. Patients receiving protective lung ventilation were 1.17 times less likely to develop pulmonary complications after surgery than those receiving conventional lung ventilation (hazard ratio [RR] 0.18, 95% confidence interval [CI] 1.13–1.22; I2 = 0%). When tested for bias (P = 0.36), the result was statistically significant. Patients with protective lung ventilation were less likely to develop pulmonary complications after laparoscopic surgery.ConclusionCompared with conventional mechanical ventilation, protective lung ventilation reduces the incidence of postoperative pulmonary complications. For patients undergoing laparoscopic surgery, we suggest the use of protective lung ventilation, which is effective in reducing the incidence of lung injury and pulmonary infection. Implementation of a low tidal volume plus moderate positive end-expiratory pressure strategy reduces the risk of postoperative pulmonary complications.
Characteristics of delirium and its association with sedation and in-hospital mortality in patients with COVID-19 on veno-venous extracorporeal membrane oxygenation
Authors: Sun Philip Young-woo , Fanning Jonathon , Peeler Anna , Shou Benjamin , Lindsley John , Caturegli Giorgio , Whitman Glenn , Cha Stephanie , Kim Bo Soo , Cho Sung-Min ,   HERALD investigators
Published: May 2023

BackgroundVeno-venous extracorporeal membrane oxygenation (VV-ECMO) has been used in patients with COVID-19 acute respiratory distress syndrome (ARDS). We aim to assess the characteristics of delirium and describe its association with sedation and in-hospital mortality.MethodsWe retrospectively reviewed adult patients on VV-ECMO for severe COVID-19 ARDS in the Johns Hopkins Hospital ECMO registry in 2020–2021. Delirium was assessed by the Confusion Assessment Method for the ICU (CAM-ICU) when patients scored−3 or above on the Richmond Agitation-Sedation Scale (RASS). Primary outcomes were delirium prevalence and duration in the proportion of days on VV-ECMO.ResultsOf 47 patients (median age = 51), 6 were in a persistent coma and 40 of the remaining 41 patients (98%) had ICU delirium. Delirium in the survivors (n = 21) and non-survivors (n = 26) was first detected at a similar time point (VV-ECMO day 9.5(5,14) vs. 8.5(5,21), p = 0.56) with similar total delirium days on VV-ECMO (9.5[3.3, 16.8] vs. 9.0[4.3, 28.3] days, p = 0.43). Non-survivors had numerically lower RASS scores on VV-ECMO days (−3.72[−4.42, −2.96] vs. −3.10[−3.91, −2.21], p = 0.06) and significantly prolonged delirium-unassessable days on VV-ECMO with a RASS of −4/−5 (23.0[16.3, 38.3] vs. 17.0(6,23), p = 0.03), and total VV-ECMO days (44.5[20.5, 74.3] vs. 27.0[21, 38], p = 0.04). The proportion of delirium-present days correlated with RASS (r = 0.64, p &lt; 0.001), the proportions of days on VV-ECMO with a neuromuscular blocker (r = −0.59, p = 0.001), and with delirium-unassessable exams (r = −0.69, p &lt; 0.001) but not with overall ECMO duration (r = 0.01, p = 0.96). The average daily dosage of delirium-related medications on ECMO days did not differ significantly. On an exploratory multivariable logistic regression, the proportion of delirium days was not associated with mortality.ConclusionLonger duration of delirium was associated with lighter sedation and shorter paralysis, but it did not discern in-hospital mortality. Future studies should evaluate analgosedation and paralytic strategies to optimize delirium, sedation level, and outcomes.