bluuebunny/crossref_metadata_2025_split huggingface dataset:
Inter‐Annual Variability in Atmospheric Transport Complicates Estimation of US Methane Emissions Trends
Authors: Feng Leyang , Tavakkoli Sakineh , Jordaan Sarah M. , Andrews Arlyn E. , Benmergui Joshua S. , Waugh Darryn W. , Zhang Mingyang , Gaeta Dylan C. , Miller Scot M. 
Published: July 2023

AbstractUS natural gas production increased by ∼43% between 2005 and 2015, but there is disagreement among existing studies on whether this growth led to increased methane emissions. We evaluate the likely contributions of atmospheric transport to an upward trend in atmospheric methane enhancements during 2007–2015, defined as the contribution of North American emissions to atmospheric observations across the US. We find that interannual variability (IAV) in transport yields an apparent upward trend in enhancements across much of the US during this time and can explain disagreements among existing studies over emissions trends. We further find that enhancements at satellite and in situ monitoring sites are 19% higher during El Niño than La Niña, possibly because air masses spend more time over North America on average during some years. The results show that accurate modeling of IAV in transport is a key prerequisite to quantifying emissions trends.
Small‐Magnitude Seismic Swarms in Central Utah (US): Interactions of Regional Tectonics, Local Structures and Hydrothermal Systems
Authors: Petersen G. M. , Pankow K. L. 
Published: July 2023

AbstractSwarms in Central Utah are situated in the complex transition between the Basin and Range (BR) province and the Colorado Plateau. Transecting transverse structures, volcanic deposits, and hydrothermal systems complicate the extensional BR horst and graben structures and provide a multitude of plausible triggering mechanisms. Revisiting the catalog of the University of Utah Seismograph Stations (1981–2022), we analyze spatio‐temporal patterns and characteristic features of seismic sequences. Swarms with alternating seismicity rates, bursts, and longer swarms with persistent moment release exhibit a remarkable diversity in temporal evolution. Swarm durations do not scale with cumulative seismic moment: swarms lasting less than 1 day can have similar cumulative seismic moments as month‐long swarms. We observe stationary swarms re‐occurring for years (e.g., Mineral Mountains), as well as singular swarms in low‐seismicity areas (e.g., activating a local structure in Milford, 2021). The swarms show a pronounced heterogeneity in triggering and driving mechanisms, observed in the detailed analysis of exemplary sequences (detections, relocations, moment tensors, waveform‐based clustering, and repeater analysis). The 2022 Sevier Valley sequence activated a BR‐related normal fault, the first resolved fault plane in the valley since 1983. The 2011 Circleville sequence is interpreted as a swarm triggered by mainshock‐aftershock activity characterized by increasing magnitudes, changing rupture mechanisms, and a concentration of highly similar events in the second part of the sequence. By jointly discussing exemplary sequences and catalog statistics, we draw a comprehensive picture of swarm activity and its relation to geothermal and tectonic activity.
β‐arrestin 2 negatively regulates lung cancer progression by inhibiting the TRAF6 signaling axis for NF-κB activation and autophagy induced by TLR3 and TLR4
Authors: Kim Ji Young , Shin Ji Hye , Kim Mi-Jeong , Kang Yeeun , Lee Ji Su , Son Juhee , Jeong Soo-Kyung , Kim Daesik , Kim Duk-Hwan , Chun Eunyoung , Lee Ki-Young 
Published: July 2023

Abstractβ‐arrestin 2 (ARRB2) is functionally implicated in cancer progression via various signaling pathways. However, its role in lung cancer remains unclear. To obtain clinical insight on its function in lung cancer, microarray data from lung tumor tissues (LTTs) and matched lung normal tissues (mLNTs) of primary non-small cell lung cancer (NSCLC) patients (n = 37) were utilized. ARRB2 expression levels were markedly decreased in all 37 LTTs compared to those in matched LNTs of NSCLC patients. They were significantly co-related to enrichment gene sets associated with oncogenic and cancer genes. Importantly, Gene Set Enrichment Analysis (GSEA) between three LTTs with highly down-regulated ARRB2 and three LTTs with lowly down-regulated ARRB2 revealed significant enrichments related to toll-like receptor (TLR) signaling and autophagy genes in three LTTs with highly down-regulated ARRB2, suggesting that ARRB2 was negatively involved in TLR-mediated signals for autophagy induction in lung cancer. Biochemical studies for elucidating the molecular mechanism revealed that ARRB2 interacted with TNF receptor-associated factor 6 (TRAF6) and Beclin 1 (BECN1), thereby inhibiting the ubiquitination of TRAF6-TAB2 to activate NF-κB and TRAF6-BECN1 for autophagy stimulated by TLR3 and TLR4, suggesting that ARRB2 could inhibit the TRAF6-TAB2 signaling axis for NF-κB activation and TRAF6-BECN1 signaling axis for autophagy in response to TLR3 and TLR4. Notably, ARRB2-knockout (ARRB2KO) lung cancer cells exhibited marked enhancements of cancer migration, invasion, colony formation, and proliferation in response to TLR3 and TLR4 stimulation. Altogether, our current data suggest that ARRB2 can negatively regulate lung cancer progression by inhibiting TLR3- and TLR4-induced autophagy.
WFDC3 inhibits tumor metastasis by promoting the ERβ-mediated transcriptional repression of TGFBR1 in colorectal cancer
Authors: Liu Tianqi , Zhao Min , Peng Lin , Chen Jiangbo , Xing Pu , Gao Pin , Chen Lei , Qiao Xiaowen , Wang Zaozao , Di Jiabo , Qu Hong , Jiang Beihai , Su Xiangqian 
Published: July 2023

AbstractEstrogen plays a protective role in colorectal cancer (CRC) and primarily functions through estrogen receptor β (ERβ). However, clinical strategies for CRC therapy associated with ERβ are still under investigation. Our discoveries identified WFDC3 as a tumor suppressor that facilitates estrogen-induced inhibition of metastasis through the ERβ/TGFBR1 signaling axis. WFDC3 interacts with ERβ and increases its protein stability by inhibiting its proteasome-dependent degradation. WFDC3 represses TGFBR1 expression through ERβ-mediated transcription. Blocking TGFβ signaling with galunisertib, a drug used in clinical trials that targets TGFBR1, impaired the migration of CRC cells induced by WFDC3 depletion. Moreover, there was clinical significance to WFDC3 in CRC, as CRC patients with high WFDC3 expression in tumor cells had favorable prognoses. Therefore, this work suggests that WFDC3 could be an indicator for therapies targeting the estrogen/ERβ pathway in CRC patients.
Cancer associated fibroblast derived SLIT2 drives gastric cancer cell metastasis by activating NEK9
Authors: Lu Guofang , Du Rui , Dong Jiaqiang , Sun Yi , Zhou Fenli , Feng Fan , Feng Bin , Han Ying , Shang Yulong 
Published: July 2023

AbstractThe secretory properties of cancer-associated fibroblasts (CAFs) play predominant roles in shaping a pro-metastatic tumor microenvironment. The present study demonstrated that SLIT2, an axon guidance protein, produced by CAFs and promoted gastric cancer (GC) metastasis in two gastric cancer cell lines (AGS and MKN45) by binding to roundabout guidance receptor 1 (ROBO1). Mass-spectrometry analysis revealed that ROBO1 could interact with NEK9, a serine/threonine kinase. And their mutual binding activities were further enhanced by SLIT2. Domain analysis revealed the kinase domain of NEK9 was critical in its interaction with the intracellular domain (ICD) of ROBO1, and it also directly phosphorylated tripartite motif containing 28 (TRIM28) and cortactin (CTTN) in AGS and MKN45 cells. TRIM28 function as a transcriptional elongation factor, which directly facilitate CTTN activation. In addition, Bioinformatics analysis and experimental validation identified transcriptional regulation of STAT3 and NF-κB p100 by TRIM28, and a synergetic transcription of CTTN by STAT3 and NF-κB p100 was also observed in AGS and MKN45. Therefore, CAF-derived SLIT2 increased the expression and phosphorylation levels of CTTN, which induced cytoskeletal reorganization and GC cells metastasis. A simultaneous increase in the expression levels of NEK9, TRIM28 and CTTN was found in metastatic GC lesions compared with paired non-cancerous tissues and primary cancer lesions via IHC and Multiplex IHC. The analysis of the data from a cohort of patients with GC revealed that increased levels of NEK9, TRIM28 and CTTN were associated with a decreased overall survival rate. On the whole, these findings revealed the connections of CAFs and cancer cells through SLIT2/ROBO1 and inflammatory signaling, and the key molecules involved in this process may serve as potential biomarkers and therapeutic targets for GC.
Earthquake focal mechanisms with distributed acoustic sensing
Authors: Li Jiaxuan , Zhu Weiqiang , Biondi Ettore , Zhan Zhongwen 
Published: July 2023

AbstractEarthquake focal mechanisms provide critical in-situ insights about the subsurface faulting geometry and stress state. For frequent small earthquakes (magnitude< 3.5), their focal mechanisms are routinely determined using first-arrival polarities picked on the vertical component of seismometers. Nevertheless, their quality is usually limited by the azimuthal coverage of the local seismic network. The emerging distributed acoustic sensing (DAS) technology, which can convert pre-existing telecommunication cables into arrays of strain/strain-rate meters, can potentially fill the azimuthal gap and enhance constraints on the nodal plane orientation through its long sensing range and dense spatial sampling. However, determining first-arrival polarities on DAS is challenging due to its single-component sensing and low signal-to-noise ratio for direct body waves. Here, we present a data-driven method that measures P-wave polarities on a DAS array based on cross-correlations between earthquake pairs. We validate the inferred polarities using the regional network catalog on two DAS arrays, deployed in California and each comprising ~ 5000 channels. We demonstrate that a joint focal mechanism inversion combining conventional and DAS polarity picks improves the accuracy and reduces the uncertainty in the focal plane orientation. Our results highlight the significant potential of integrating DAS with conventional networks for investigating high-resolution earthquake source mechanisms.
Cryo-EM structures of full-length integrin αIIbβ3 in native lipids
Authors: Adair Brian D. , Xiong Jian-Ping , Yeager Mark , Arnaout M. Amin 
Published: July 2023

AbstractPlatelet integrin αIIbβ3 is maintained in a bent inactive state (low affinity to physiologic ligand), but can rapidly switch to a ligand-competent (high-affinity) state in response to intracellular signals (“inside-out” activation). Once bound, ligands drive proadhesive “outside-in” signaling. Anti-αIIbβ3 drugs like eptifibatide can engage the inactive integrin directly, inhibiting thrombosis but inadvertently impairing αIIbβ3 hemostatic functions. Bidirectional αIIbβ3 signaling is mediated by reorganization of the associated αIIb and β3 transmembrane α-helices, but the underlying changes remain poorly defined absent the structure of the full-length receptor. We now report the cryo-EM structures of full-length αIIbβ3 in its apo and eptifibatide-bound states in native cell-membrane nanoparticles at near-atomic resolution. The apo form adopts the bent inactive state but with separated transmembrane α-helices, and a fully accessible ligand-binding site that challenges the model that this site is occluded by the plasma membrane. Bound eptifibatide triggers dramatic conformational changes that may account for impaired hemostasis. These results advance our understanding of integrin structure and function and may guide development of safer inhibitors.
Extending the dynamic range of biomarker quantification through molecular equalization
Authors: Newman Sharon S. , Wilson Brandon D. , Mamerow Daniel , Wollant Benjamin C. , Nyein Hnin , Rosenberg-Hasson Yael , Maecker Holden T. , Eisenstein Michael , Soh H. Tom 
Published: July 2023

AbstractPrecision medicine requires highly scalable methods of multiplexed biomarker quantification that can accurately describe patient physiology. Unfortunately, contemporary molecular detection methods are generally limited to a dynamic range of sensitivity spanning just 3–4 orders of magnitude, whereas the actual physiological dynamic range of the human plasma proteome spans more than 10 orders of magnitude. Current methods rely on sample splitting and differential dilution to compensate for this mismatch, but such measures greatly limit the reproducibility and scalability that can be achieved—in particular, the effects of non-linear dilution can greatly confound the analysis of multiplexed assays. We describe here a two-pronged strategy for equalizing the signal generated by each analyte in a multiplexed panel, thereby enabling simultaneous quantification of targets spanning a wide range of concentrations. We apply our ‘EVROS’ strategy to a proximity ligation assay and demonstrate simultaneous quantification of four analytes present at concentrations spanning from low femtomolar to mid-nanomolar levels. In this initial demonstration, we achieve a dynamic range spanning seven orders of magnitude in a single 5 µl sample of undiluted human serum, highlighting the opportunity to achieve sensitive, accurate detection of diverse analytes in a highly multiplexed fashion.
2D MXenes polar catalysts for multi-renewable energy harvesting applications
Authors: Pan Xiaoyang , Yang Xuhui , Yu Maoqing , Lu Xiaoxiao , Kang Hao , Yang Min-Quan , Qian Qingrong , Zhao Xiaojing , Liang Shijing , Bian Zhenfeng 
Published: July 2023

AbstractThe synchronous harvesting and conversion of multiple renewable energy sources for chemical fuel production and environmental remediation in a single system is a holy grail in sustainable energy technologies. However, it is challenging to develop advanced energy harvesters that satisfy different working mechanisms. Here, we theoretically and experimentally disclose the use of MXene materials as versatile catalysts for multi-energy utilization. Ti3C2TX MXene shows remarkable catalytic performance for organic pollutant decomposition and H2 production. It outperforms most reported catalysts under the stimulation of light, thermal, and mechanical energy. Moreover, the synergistic effects of piezo-thermal and piezo-photothermal catalysis further improve the performance when using Ti3C2TX. A mechanistic study reveals that hydroxyl and superoxide radicals are produced on the Ti3C2TX under diverse energy stimulation. Furthermore, similar multi-functionality is realized in Ti2CTX, V2CTX, and Nb2CTX MXene materials. This work is anticipated to open a new avenue for multisource renewable energy harvesting using MXene materials.
Construction of room temperature phosphorescent materials with ultralong lifetime by in-situ derivation strategy
Authors: Jia Qinglong , Yan Xilong , Wang Bowei , Li Jiayi , Xu Wensheng , Shen Zhuoyao , Bo Changchang , Li Yang , Chen Ligong 
Published: July 2023

AbstractAlthough room temperature phosphorescence (RTP) materials have been widely investigated, it is still a great challenge to improve the performance of RTP materials by promoting triplet exciton generation and stabilization. In this study, an in-situ derivation strategy was proposed to construct efficient RTP materials by in-situ deriving guest molecules and forming a rigid matrix during co-pyrolysis of guest molecules and urea. Characterizations and theoretical calculations revealed that the generated derivatives were beneficial for promoting intersystem crossing (ISC) to produce more triplet excitons, while rigid matrix could effectively suppress the non-radiative transition of triplet excitons. Thus, the in-situ derivation strategy was concluded to simultaneously promote the generation and stabilization of triplet excitons. With this method, the ultralong lifetime of RTP materials could reach up to 5.33 s and polychromatic RTP materials were easily achieved. Moreover, the potential applications of the RTP materials in reprocessing or editable anti-counterfeiting were successfully demonstrated.
Ferroelectric solitons crafted in epitaxial bismuth ferrite superlattices
Authors: Govinden Vivasha , Tong Peiran , Guo Xiangwei , Zhang Qi , Mantri Sukriti , Seyfouri Mohammad Moein , Prokhorenko Sergei , Nahas Yousra , Wu Yongjun , Bellaiche Laurent , Sun Tulai , Tian He , Hong Zijian , Valanoor Nagarajan , Sando Daniel 
Published: July 2023

AbstractIn ferroelectrics, complex interactions among various degrees of freedom enable the condensation of topologically protected polarization textures. Known as ferroelectric solitons, these particle-like structures represent a new class of materials with promise for beyond-CMOS technologies due to their ultrafine size and sensitivity to external stimuli. Such polarization textures have scarcely been demonstrated in multiferroics. Here, we present evidence for ferroelectric solitons in (BiFeO3)/(SrTiO3) superlattices. High-resolution piezoresponse force microscopy and Cs-corrected high-angle annular dark-field scanning transmission electron microscopy reveal a zoo of topologies, and polarization displacement mapping of planar specimens reveals center-convergent/divergent topological defects as small as 3 nm. Phase-field simulations verify that some of these structures can be classed as bimerons with a topological charge of ±1, and first-principles-based effective Hamiltonian computations show that the coexistence of such structures can lead to non-integer topological charges, a first observation in a BiFeO3-based system. Our results open new opportunities in multiferroic topotronics.
Affinity and cooperativity modulate ternary complex formation to drive targeted protein degradation
Authors: Wurz Ryan P. , Rui Huan , Dellamaggiore Ken , Ghimire-Rijal Sudipa , Choi Kaylee , Smither Kate , Amegadzie Albert , Chen Ning , Li Xiaofen , Banerjee Abhisek , Chen Qing , Mohl Dane , Vaish Amit 
Published: July 2023

AbstractTargeted protein degradation via “hijacking” of the ubiquitin-proteasome system using proteolysis targeting chimeras (PROTACs) has evolved into a novel therapeutic modality. The design of PROTACs is challenging; multiple steps involved in PROTAC-induced degradation make it difficult to establish coherent structure-activity relationships. Herein, we characterize PROTAC-mediated ternary complex formation and degradation by employing von Hippel–Lindau protein (VHL) recruiting PROTACs for two different target proteins, SMARCA2 and BRD4. Ternary-complex attributes and degradation activity parameters are evaluated by varying components of the PROTAC’s architecture. Ternary complex binding affinity and cooperativity correlates well with degradation potency and initial rates of degradation. Additionally, we develop a ternary-complex structure modeling workflow to calculate the total buried surface area at the interface, which is in agreement with the measured ternary complex binding affinity. Our findings establish a predictive framework to guide the design of potent degraders.
MAP4Ks inhibition promotes retinal neuron regeneration from Müller glia in adult mice
Authors: Zhang Houjian , Guo Yuli , Yang Yaqiong , Wang Yuqian , Zhang Youwen , Zhuang Jingbin , Zhang Yuting , Shen Mei , Zhao Jiankai , Zhang Rongrong , Qiu Yan , Li Shiying , Hu Jiaoyue , Li Wei , Wu Jianfeng , Xu Haiwei , Fliesler Steven J. , Liao Yi , Liu Zuguo 
Published: July 2023

AbstractMammalian Müller glia (MG) possess limited regenerative capacities. However, the intrinsic capacity of mammalian MG to transdifferentiate to generate mature neurons without transgenic manipulations remains speculative. Here we show that MAP4K4, MAP4K6 and MAP4K7, which are conserved Misshapen subfamily of ste20 kinases homologs, repress YAP activity in mammalian MG and therefore restrict their ability to be reprogrammed. However, by treating with a small molecule inhibitor of MAP4K4/6/7, mouse MG regain their ability to proliferate and enter into a retinal progenitor cell (RPC)-like state after NMDA-induced retinal damage; such plasticity was lost in YAP knockout MG. Moreover, spontaneous trans-differentiation of MG into retinal neurons expressing both amacrine and retinal ganglion cell (RGC) markers occurs after inhibitor withdrawal. Taken together, these findings suggest that MAP4Ks block the reprogramming capacity of MG in a YAP-dependent manner in adult mammals, which provides a novel avenue for the pharmaceutical induction of retinal regeneration in vivo.
Fungus-derived protein particles as cell-adhesive matrices for cell-cultivated food
Authors: Teo Yu Xing , Lee Kah Yin , Goh Corinna Jie Hui , Wang Loo Chien , Sobota Radoslaw M. , Chiam Keng-Hwee , Du Chan , Wan Andrew C. A. 
Published: July 2023

AbstractCell-adhesive factors mediate adhesion of cells to substrates via peptide motifs such as the Arg–Gly–Asp (RGD) sequence. With the onset of sustainability issues, there is a pressing need to find alternatives to animal-derived cell-adhesive factors, especially for cell-cultivated food applications. In this paper, we show how data mining can be a powerful approach toward identifying fungal-derived cell-adhesive proteins and present a method to isolate and utilize these proteins as extracellular matrices (ECM) to support cell adhesion and culture in 3D. Screening of a protein database for fungal and plant proteins uncovered that ~5.5% of the unique reported proteins contain RGD sequences. A plot of fungi species vs RGD percentage revealed that 98% of the species exhibited an RGD percentage > = 1%. We observed the formation of protein particles in crude extracts isolated from basidiomycete fungi, which could be correlated to their stability towards particle aggregation at different temperatures. These protein particles were incorporated in 3D fiber matrices encapsulating mouse myoblast cells, showing a positive effect on cell alignment. We demonstrated a cell traction stress on the protein particles (from Flammulina velutipes) that was comparable to cells on fibronectin. A snapshot of the RGD-containing proteins in the fungal extracts was obtained by combining SDS-PAGE and mass spectrometry of the peptide fragments obtained by enzymatic cleavage. Therefore, a sustainable source of cell-adhesive proteins is widely available in the fungi kingdom. A method has been developed to identify candidate species and produce cell-adhesive matrices, applicable to the cell-cultivated food and healthcare industries.
Spin-exchange carrier multiplication in manganese-doped colloidal quantum dots
Authors: Jin Ho , Livache Clément , Kim Whi Dong , Diroll Benjamin T. , Schaller Richard D. , Klimov Victor I. 
Published: July 2023

AbstractCarrier multiplication is a process whereby a kinetic energy of a carrier relaxes via generation of additional electron–hole pairs (excitons). This effect has been extensively studied in the context of advanced photoconversion as it could boost the yield of generated excitons. Carrier multiplication is driven by carrier–carrier interactions that lead to excitation of a valence-band electron to the conduction band. Normally, the rate of phonon-assisted relaxation exceeds that of Coulombic collisions, which limits the carrier multiplication yield. Here we show that this limitation can be overcome by exploiting not ‘direct’ but ‘spin-exchange’ Coulomb interactions in manganese-doped core/shell PbSe/CdSe quantum dots. In these structures, carrier multiplication occurs via two spin-exchange steps. First, an exciton generated in the CdSe shell is rapidly transferred to a Mn dopant. Then, the excited Mn ion undergoes spin-flip relaxation via a spin-conserving pathway, which creates two excitons in the PbSe core. Due to the extremely fast, subpicosecond timescales of spin-exchange interactions, the Mn-doped quantum dots exhibit an up-to-threefold enhancement of the multiexciton yield versus the undoped samples, which points towards the considerable potential of spin-exchange carrier multiplication in advanced photoconversion.