bluuebunny/crossref_metadata_2025_split huggingface dataset:
Mangani-eckermannite, NaNa2(Mg4Mn3+)Si8O22(OH)2, a new amphibole from Tanohata Mine, Iwate Prefecture, Japan
Authors: Kasatkin Anatoly V. , Zubkova Natalia V. , Agakhanov Atali A. , Chukanov Nikita V. , Škoda Radek , Nestola Fabrizio , Belakovskiy Dmitry I. , Pekov Igor V. 
Published: August 2023

AbstractMangani-eckermannite, ideally NaNa2(Mg4Mn3+)Si8O22(OH)2, is a new member of the amphibole supergroup found at Tanohata Mine, Shimohei District, Iwate Prefecture, Japan. It occurs as prismatic crystals up to 0.3 × 0.2 mm and their aggregates up to 1 mm intergrown with braunite, vittinkiite and quartz. Mangani-eckermannite is cherry-red to very dark red and reddish-brown in thicker grains. It is translucent with a pinkish white streak and vitreous lustre. It is brittle, fracture is stepped along crystal elongation and uneven across a crystal. Cleavage is perfect on {110}. Mohs hardness is 6. Dmeas = 3.16(2) and Dcalc = 3.186 g/cm3. The mineral is optically biaxial (–), with α = 1.645(3), β = 1.668(2), γ = 1.675(3) (589 nm); 2Vmeas = 60(10)°, 2Vcalc = 57°. The empirical formula derived from electron microprobe analysis, secondary-ion mass spectrometry and single-crystal structure refinement and calculated on the basis of 24 (O+OH) atoms per formula unit (apfu) is A(Na0.74K0.24□0.02)Σ1.00B(Na1.52Ca0.24Mn2+0.24)Σ2.00C(Mg2.54Mn2+1.45Mn3+0.71Fe3+0.26Ti0.04)Σ5.00T(Si7.97Al0.03)Σ8.00O22W[(OH)1.52O0.48]Σ2.00. Mangani-eckermannite is monoclinic, space group C2/m, a = 9.9533(4), b = 18.1440(7), c = 5.2970(2) Å, β = 103.948(4)°, V = 928.39(6) Å3 and Z = 2. The strongest lines of the powder X-ray diffraction pattern [d, Å (I, %)(hkl)] are: 8.52(100)(110); 4.54(25)(040); 3.41(29)(131); 3.16(23)(310,201); 2.721(37)(151); 2.533(26)($\bar{2}$02). The crystal structure was refined to R1 = 0.0264 for 1001 independent reflections with I > 2σ(I). The place of mangani-eckermannite in the nomenclature of the amphibole supergroup is discussed and the status of mangano-ferri-eckermannite as a valid mineral species and successor of ‘kôzulite’ is questioned.
Loss of endothelial membrane KIT ligand affects systemic KIT ligand levels but not bone marrow hematopoietic stem cells
Authors: Matsuoka Sahoko , Facchini Raffaella , Luis Tiago C. , Carrelha Joana , Woll Petter S. , Mizukami Takuo , Wu Bishan , Boukarabila Hanane , Buono Mario , Norfo Ruggiero , Arai Fumio , Suda Toshio , Mead Adam J. , Nerlov Claus , Jacobsen Sten Eirik W. 
Published: August 2023

Abstract
A critical regulatory role of hematopoietic stem cell (HSC) vascular niches in the bone marrow has been implicated to occur through endothelial niche cell expression of KIT ligand. However, endothelial-derived KIT ligand is expressed in both a soluble and membrane-bound form and not unique to bone marrow niches, and it is also systemically distributed through the circulatory system. Here, we confirm that upon deletion of both the soluble and membrane-bound forms of endothelial-derived KIT ligand, HSCs are reduced in mouse bone marrow. However, the deletion of endothelial-derived KIT ligand was also accompanied by reduced soluble KIT ligand levels in the blood, precluding any conclusion as to whether the reduction in HSC numbers reflects reduced endothelial expression of KIT ligand within HSC niches, elsewhere in the bone marrow, and/or systemic soluble KIT ligand produced by endothelial cells outside of the bone marrow. Notably, endothelial deletion, specifically of the membrane-bound form of KIT ligand, also reduced systemic levels of soluble KIT ligand, although with no effect on stem cell numbers, implicating an HSC regulatory role primarily of soluble rather than membrane KIT ligand expression in endothelial cells. In support of a role of systemic rather than local niche expression of soluble KIT ligand, HSCs were unaffected in KIT ligand deleted bones implanted into mice with normal systemic levels of soluble KIT ligand. Our findings highlight the need for more specific tools to unravel niche-specific roles of regulatory cues expressed in hematopoietic niche cells in the bone marrow.
The clinical and molecular taxonomy of t(14;18)-negative follicular lymphomas
Authors: Salaverria Itziar , Weigert Oliver , Quintanilla-Martinez Leticia 
Published: August 2023

Abstract
Follicular lymphoma (FL) is a neoplasm derived from germinal center B cells, composed of centrocytes and centroblasts, with at least a focal follicular growth pattern. The t(14;18) translocation together with epigenetic deregulation through recurrent genetic alterations are now recognized as the hallmark of FL. Nevertheless, FL is a heterogeneous disease, clinically, morphologically, and biologically. The existence of FL lacking the t(14;18) chromosomal alteration highlights the complex pathogenesis of FL, and indicates that there are alternative pathogenetic mechanisms that can induce a neoplasm with follicular center B-cell phenotype. Based on their clinical presentation, t(14;18)-negative FLs can be divided into 3 broad groups: nodal presentation, extranodal presentation, and those affecting predominantly children and young adults. Recent studies have shed some light into the genetic alterations of t(14;18)-negative FL. Within the group of t(14;18)-negative FL with nodal presentation, cases with STAT6 mutations are increasingly recognized as a distinctive molecular subgroup, often cooccurring with CREBBP and/or TNFRSF14 mutations. FL with BCL6 rearrangement shows clinicopathological similarities to its t(14;18)-positive counterpart. In contrast, t(14;18)-negative FL in extranodal sites is characterized mainly by TNFRSF14 mutations in the absence of chromatin modifying gene mutations. FL in children have a unique molecular landscape when compared with those in adults. Pediatric-type FL (PTFL) is characterized by MAP2K1, TNFRSF14, and/or IRF8 mutations, whereas large B-cell lymphoma with IRF4 rearrangement is now recognized as a distinct entity, different from PTFL. Ultimately, a better understanding of FL biology and heterogeneity should help to understand the clinical differences and help guide patient management and treatment decisions.
Tetraspanins set the stage for bone marrow microenvironment–induced chemoprotection in hematologic malignancies
Authors: Quagliano Anthony , Gopalakrishnapillai Anilkumar , Barwe Sonali P. 
Published: August 2023

Abstract
Despite recent advances in the treatment of hematologic malignancies, relapse still remains a consistent issue. One of the primary contributors to relapse is the bone marrow microenvironment providing a sanctuary to malignant cells. These cells interact with bone marrow components such as osteoblasts and stromal cells, extracellular matrix proteins, and soluble factors. These interactions, mediated by the cell surface proteins like cellular adhesion molecules (CAMs), induce intracellular signaling that leads to the development of bone marrow microenvironment–induced chemoprotection (BMC). Although extensive study has gone into these CAMs, including the development of targeted therapies, very little focus in hematologic malignancies has been put on a family of cell surface proteins that are just as important for mediating bone marrow interactions: the transmembrane 4 superfamily (tetraspanins; TSPANs). TSPANs are known to be important mediators of microenvironmental interactions and metastasis based on numerous studies in solid tumors. Recently, evidence of their possible role in hematologic malignancies, specifically in the regulation of cellular adhesion, bone marrow homing, intracellular signaling, and stem cell dynamics in malignant hematologic cells has come to light. Many of these effects are facilitated by associations with CAMs and other receptors on the cell surface in TSPAN-enriched microdomains. This could suggest that TSPANs play an important role in mediating BMC in hematologic malignancies and could be used as therapeutic targets. In this review, we discuss TSPAN structure and function in hematologic cells, their interactions with different cell surface and signaling proteins, and possible ways to target/inhibit their effects.
Method for Evaluating Bolt Competitive Failure Life Under Composite Excitation
Authors: Yang Guangwu , Yang Long , Zhao Han , Ding Haoxu , Yang Bing , Xiao Shoune 
Published: August 2023

AbstractIn this study, the competitive failure mechanism of bolt loosening and fatigue is elucidated via competitive failure tests on bolts under composite excitation. Based on the competitive failure mechanism, the mode prediction model and “load ratio—life prediction curve” (ξ–N curve) of the bolt competitive failure are established. Given the poor correlation of the ξ–N curve, an evaluation model of the bolt competitive failure life is proposed based on Miner’s linear damage accumulation theory. Based on the force analysis of the thread surface and simulation of the bolt connection under composite excitation, a theoretical equation of the bolt competitive failure life is established to validate the model for evaluating the bolt competitive failure life. The results reveal that the proposed model can accurately predict the competitive failure life of bolts under composite excitation, and thereby, it can provide guidance to engineering applications.
Mapping of a major QTL for increased robustness and detection of genome assembly errors in Asian seabass (Lates calcarifer)
Authors: Shen Xueyan , Niu Yong Chao , Uichanco Joseph Angelo V. , Phua Norman , Bhandare Pranjali , Thevasagayam Natascha May , Prakki Sai Rama Sridatta , Orbán László 
Published: August 2023

Abstract
Background
For Asian seabass (Lates calcarifer, Bloch 1790) cultured at sea cages various aquatic pathogens, complex environmental and stress factors are considered as leading causes of disease, causing tens of millions of dollars of annual economic losses. Over the years, we conducted farm-based challenges by exposing Asian seabass juveniles to complex natural environmental conditions. In one of these challenges, we collected a total of 1,250 fish classified as either ‘sensitive’ or ‘robust’ individuals during the 28-day observation period.

Results
We constructed a high-resolution linkage map with 3,089 SNPs for Asian seabass using the double digest Restriction-site Associated DNA (ddRAD) technology and a performed a search for Quantitative Trait Loci (QTL) associated with robustness. The search detected a major genome-wide significant QTL for increased robustness in pathogen-infected marine environment on linkage group 11 (ASB_LG11; 88.9 cM to 93.6 cM) with phenotypic variation explained of 81.0%. The QTL was positioned within a > 800 kb genomic region located at the tip of chromosome ASB_LG11 with two Single Nucleotide Polymorphism markers, R1-38468 and R1-61252, located near to the two ends of the QTL. When the R1-61252 marker was validated experimentally in a different mass cross population, it showed a statistically significant association with increased robustness. The majority of thirty-six potential candidate genes located within the QTL have known functions related to innate immunity, stress response or disease. By utilizing this ddRAD-based map, we detected five mis-assemblies corresponding to four chromosomes, namely ASB_LG8, ASB_LG9, ASB_LG15 and ASB_LG20, in the current Asian seabass reference genome assembly.

Conclusion
According to our knowledge, the QTL associated with increased robustness is the first such finding from a tropical fish species. Depending on further validation in other stocks and populations, it might be potentially useful for selecting robust Asian seabass lines in selection programs.
Mycorrhizal colonization and Streptomyces viridosporus HH1 synergistically up-regulate the polyphenol biosynthesis genes in wheat against stripe rust
Authors: Rashad Younes M. , El-Sharkawy Hany H. , Abdalla Sara A. , Ibrahim Omar M. , Elazab Nahla T. 
Published: August 2023

Abstract
Background
Stripe rust is considered one of the most devastating diseases of wheat all over the world, resulting in a high loss in its production. In this study, time-course changes in expression of the polyphenol biosynthesis pathways genes in wheat against stripe rust were investigated. The defense mechanisms triggered by mycorrhizal colonization and/or spraying with Streptomyces viridosporus HH1 against this disease were also investigated.

Results
Results obtained revealed that C3H, which is considered the key gene in lignin biosynthesis, was the most expressed gene. Furthermore, most of the chlorogenic acid and flavonoid biosynthesis genes were also overexpressed. Volcano plots of the studied genes reveal that the dual treatment led to a high significant overexpression of 10 out of the 13 studied genes. Heatmap of these genes showed that the most frequent expressed gene in response to all applied treatments along the study period was DFR, the key gene in the biosynthesis of anthocyanidins. Gene co-expression network of the studied genes showed that HQT was the most central gene with respect to the other genes, followed by AN2 and DFR, respectively. Accumulation of different flavonoids and phenolic acids were detected in response to the dual treatment, in particular, cinnamic acid, coumarin, and esculetin, which recorded the highest elevation level recording 1000, 488.23, and 329.5% respectively. Furthermore, results from the greenhouse experiment showed that application of the dual treatment led to an 82.8% reduction in the disease severity, compared with the control treatment.

Conclusions
We can conclude that the biosynthesis of lignin, chlorogenic acid, and flavonoids contributed to the synergistic triggering effect of the dual treatment on wheat resistance to stripe rust.
Promotive effect of phytosulfokine - peptide growth factor - on protoplast cultures development in Fagopyrum tataricum (L.) Gaertn
Authors: Zaranek Magdalena , Pérez-Pérez Reneé , Milewska-Hendel Anna , Betekhtin Alexander , Grzebelus Ewa 
Published: August 2023

Abstract
Background
Fagopyrum tataricum (Tartary buckwheat) is a valuable crop of great nutritional importance due to its high level of bioactive compounds. Excellent opportunities to obtain plants with the high level or the desired profile of valuable metabolites may be provided by in vitro cultures. Among known in vitro techniques, protoplast technology is an exciting tool for genetic manipulation to improve crop traits. In that context, protoplast fusion may be applied to generate hybrid cells between different species of Fagopyrum. To apply protoplast cultures to the aforementioned approaches in this research, we established the protoplast-to-plant system in Tartary buckwheat.

Results
In this work, cellulase and pectinase activity enabled protoplast isolation from non-morphogenic and morphogenic callus (MC), reaching, on average, 2.3 × 106 protoplasts per g of fresh weight. However, to release protoplasts from hypocotyls, the key step was the application of driselase in the enzyme mixture. We showed that colony formation could be induced after protoplast embedding in agarose compared to the alginate matrix. Protoplasts cultured in a medium based on Kao and Michayluk supplemented with phytosulfokine (PSK) rebuilt cell walls, underwent repeated mitotic division, formed aggregates, which consequently led to callus formation. Plating efficiency, expressing the number of cell aggregate formed, in 10-day-old protoplast cultures varied from 14% for morphogenic callus to 30% for hypocotyls used as a protoplast source. However plant regeneration via somatic embryogenesis and organogenesis occurred only during the cultivation of MC-derived protoplasts.

Conclusions
This study demonstrated that the applied protoplast isolation approach facilitated the recovery of viable protoplasts. Moreover, the embedding of protoplasts in an agarose matrix and supplementation of a culture medium with PSK effectively stimulated cell division and further development of Tartary buckwheat protoplast cultures along with the plant regeneration. Together, these results provide the first evidence of developing a protoplast-to-plant system from the MC of Fagopyrum tataricum used as source material. These findings suggest that Tartary buckwheat’s protoplast cultures have potential implications for the species’ somatic hybridization and genetic improvement.
Progression to myocardial infarction short-term death based on interval sequential pattern mining
Authors: Wu Yang-Sheng , Taniar David , Adhinugraha Kiki , Wang Chao-Hung , Pai Tun-Wen 
Published: August 2023

Abstract
Background
Myocardial infarction (MI) is one of the significant cardiovascular diseases (CVDs). According to Taiwanese health record analysis, the hazard rate reaches a peak in the initial year after diagnosis of MI, drops to a relatively low value, and maintains stable for the following years. Therefore, identifying suspicious comorbidity patterns of short-term death before the diagnosis may help achieve prolonged survival for MI patients.

Methods
Interval sequential pattern mining was applied with odds ratio to the hospitalization records from the Taiwan National Health Insurance Research Database to evaluate the disease progression and identify potential subjects at the earliest possible stage.

Results
Our analysis resulted in five disease pathways, including “diabetes mellitus,” “other disorders of the urethra and urinary tract,” “essential hypertension,” “hypertensive heart disease,” and “other forms of chronic ischemic heart disease” that led to short-term death after MI diagnosis, and these pathways covered half of the cohort.

Conclusion
We explored the possibility of establishing trajectory patterns to identify the high-risk population of early mortality after MI.
Evaluation of the features of cystic echinococcosis with concurrent super-infection: a retrospective study in Southern Iran
Authors: Shahriarirad Reza , Shekouhi Ramin , Erfani Amirhossein , Rastegarian Mohammad , Eskandarisani Mehrdad , Motamedi Marjan , Sarkari Bahador 
Published: August 2023

Abstract
Objective
Superinfection of cystic echinococcosis (CE) is a life-threatening complication with significant morbidities, which can be prevented with early diagnosis and treatment. This study aims to examine the clinical characteristics, diagnostic methods, and treatment options for superinfected CE, as there is currently limited information available on the differences between superinfected and non-infected CE in terms of clinical features, serological and radiologic findings.

Methods
This cross-sectional study was conducted on hospital records of patients who were diagnosed with hydatid cysts in a 15-year period (2004 to 2018) in two main university-affiliated referral centers in Fars province, southern Iran. Patients’ information regarding the demographical and clinical features related to CE, age, sex, previous history of CE or recurrence, size and location of CE, and length of hospital stay were collected. Moreover, the characteristics of concurrent infections with hydatid cysts were recorded.

Results
A total of 586 surgeries due to CE were performed on 501 patients, of which 67 (11.43%) had reoperations due to the recurrence of the disease. A total of 30 (5.99%) incidences of superinfection were observed. There were no statistically significant differences in terms of laboratory and imaging findings between CE patients with concurrent infections and other CE patients (p-value > 0.05). Among the patients with super-infection, four had fungal infections of the lungs. Aspergillus fumigatus was the causative pathogen in all four patients that were diagnosed with fungal superinfection. All patients underwent surgical excision with favorable long-term outcomes.

Conclusion
Our study revealed a 5.99% incident rate of CE superinfection. Regarding the concurrent fungal infections in hydatid cysts, the patient’s symptoms and laboratory and imaging findings are inconclusive and histopathological evaluation seems to be the most reliable option. Surgical resection is the gold-standard treatment option with favorable outcomes and potentially can be curative.
Analysis of risk factors and construction of nomograph model for critical condition of patients with hypertension during pregnancy
Authors: Zhang Pingping , Zhong Xiwen 
Published: August 2023

Abstract
Objective
This study aims to construct the risk prediction nomogram model of critical condition in patients with hypertension during pregnancy and to verify its evaluation effect.

Methods
A total of 531 patients with hypertension during pregnancy were randomly grouped into 427 model group and 104 validation group. The model group patients included 59 cases of critical group and 368 cases of non-critical group according to the occurrence of critical situation. Multivariate Logistic regression analysis was conducted to determine the risk factors of critical condition in patients with hypertension during pregnancy, and R software was used to construct the nomogram model. Moreover, the prediction efficiency of the model was evaluated.

Results
The proportions of patients aged over 30 years, with an educational background of junior high school or below, a family history of hypertension, anemia during pregnancy, and a lower erythrocyte count were significantly higher in the critical group compared to the non-critical group (P < 0.05). Age > 30 years old, educational background of junior high school and below, family history of hypertension, anemia during pregnancy, and red blood cell count were independent risk factors for the occurrence of critical condition in patients with hypertension during pregnancy (P < 0.05). The prediction model formula Z = 1.857×Age + 1.167×Education + 1.601×Family history of hypertension + 1.815×Pregnancy anemia + 3.524×Red blood cell count+(-19.769). The area under the curve (AUC) of the nomogram in the modeling group for predicting the risk of critical situations was 0.926 (95% CI = 0.887 ~ 0.964), indicating excellent discrimination. The calibration curve closely resembled the ideal curve, demonstrating good agreement between the predicted and actual values. The AUC of the validation group’s nomogram to predict the risk of critical situation was 0.942 (95% CI = 0.872 ~ 0.998), with good discrimination. The calibration curve was close to the ideal curve, and the actual value was in good agreement with the predicted value.

Conclusion
The nomograph model can predict the risk of critical condition in patients with hypertension during pregnancy and screen high-risk population.