bluuebunny/crossref_metadata_2025_split huggingface dataset:
A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis
Authors: Li Yi , Han Yujie , Li Zihan , Zhong Yi , Guo Zhifen 
Published: July 2023

AbstractGlaucoma is an acquired optic neuropathy, which can lead to irreversible vision loss. Deep learning(DL), especially convolutional neural networks(CNN), has achieved considerable success in the field of medical image recognition due to the availability of large-scale annotated datasets and CNNs. However, obtaining fully annotated datasets like ImageNet in the medical field is still a challenge. Meanwhile, single-modal approaches remain both unreliable and inaccurate due to the diversity of glaucoma disease types and the complexity of symptoms. In this paper, a new multimodal dataset for glaucoma is constructed and a new multimodal neural network for glaucoma diagnosis and classification (GMNNnet) is proposed aiming to address both of these issues. Specifically, the dataset includes the five most important types of glaucoma labels, electronic medical records and four kinds of high-resolution medical images. The structure of GMNNnet consists of three branches. Branch 1 consisting of convolutional, cyclic and transposition layers processes patient metadata, branch 2 uses Unet to extract features from glaucoma segmentation based on domain knowledge, and branch 3 uses ResFormer to directly process glaucoma medical images.Branch one and branch two are mixed together and then processed by the Catboost classifier. We introduce a gradient-weighted class activation mapping (Grad-GAM) method to increase the interpretability of the model and a transfer learning method for the case of insufficient training data,i.e.,fine-tuning CNN models pre-trained from natural image dataset to medical image tasks. The results show that GMNNnet can better present the high-dimensional information of glaucoma and achieves excellent performance under multimodal data.
The difference between ‘placebo group’ and ‘placebo control’: a case study in psychedelic microdosing
Authors: Szigeti Balázs , Nutt David , Carhart-Harris Robin , Erritzoe David 
Published: July 2023

AbstractIn medical trials, ‘blinding’ ensures the equal distribution of expectancy effects between treatment arms in theory; however, blinding often fails in practice. We use computational modelling to show how weak blinding, combined with positive treatment expectancy, can lead to an uneven distribution of expectancy effects. We call this ‘activated expectancy bias’ (AEB) and show that AEB can inflate estimates of treatment effects and create false positive findings. To counteract AEB, we introduce theCorrect Guess Rate Curve (CGRC), a statistical tool that can estimate the outcome of a perfectly blinded trial based on data from an imperfectly blinded trial. To demonstrate the impact of AEB and the utility of the CGRC on empirical data, we re-analyzed the ‘self-blinding psychedelic microdose trial’ dataset. Results suggest that observed placebo-microdose differences are susceptible to AEB and are at risk of being false positive findings, hence, we argue that microdosing can be understood as active placebo. These results highlight the important difference between ‘trials with a placebo-control group’, i.e., when a placebo control group is formally present, and ‘placebo-controlled trials’, where patients are genuinely blind. We also present a new blinding integrity assessment tool that is compatible with CGRC and recommend its adoption.
Assessment of groundwater hydrochemistry, water quality, and health risk in Hainan Island, China
Authors: Hou Qingqin , Pan Yujie , Zeng Min , Wang Simiao , Shi Huanhuan , Huang Changsheng , Peng Hongxia 
Published: July 2023

AbstractGroundwater is an important source of water for human sustenance. The determination of groundwater quality at island sites is an urgent priority in China, but there are lacking systematic reports relating to them. Here, 63 groups of groundwater samples were collected and analyzed of Hainan Island. The groundwater in the study area is weakly alkaline, mainly comprising hard and soft freshwater. The predominant anions and cations are HCO3−, and Ca2+ and Na+, respectively, and the main water chemistry types are HCO3–Cl–Na and HCO3–Cl–Na–Ca. The chemical evolution of groundwater is mainly affected by water–rock interactions, cation exchange, and human activity. The groundwater is mostly of high quality and, in most areas, is suitable for drinking and irrigation. Contrastingly, the water quality in the west of the island is relatively poor. The spatial distribution of the risk coefficient (HQ) is consistent with the spatial variation in the NO3− concentrations in the groundwater. Notably, there are unacceptable health risks for different groups of people, with infants having the greatest level of impact, followed by children, teenagers, and adults. This study provides a valuable reference for the development and utilization of groundwater resources, as well as the improvement of aquatic ecological conditions on Hainan Island and other island areas worldwide.
Development of quantitative multiplex RT-qPCR one step assay for detection of hepatitis delta virus
Authors: da Silva Queiroz Jackson Alves , Roca Tárcio Peixoto , Souza Rutilene Barbosa , de Souza Luiz Fellype Alves , Passos-Silva Ana Maísa , da Silva André Luiz Ferreira , de Castro e Silva Eugênia , Borzacov Lourdes Maria Pinheiro , de Cássia Pontello Rampazzo Rita , dos Santos Pereira Soraya , Dantas Thor Oliveira , Mazaro Janaína , Villar Lívia Melo , Salcedo Juan Miguel Villalobos , da Matta Daniel Archimedes , Vieira Deusilene 
Published: July 2023

AbstractHepatitis Delta is a disease caused by exposure to hepatitis B (HBV) and hepatitis D (HDV) viruses, usually with a more severe clinical outcome when compared to an HBV monoinfection. To date, the real prevalence of HDV infection is underestimated and detection methods are poorly available, especially in more endemic regions. Therefore, a one-step RT-qPCR method for quantification of HDV-RNA was developed. Biological samples were selected between 2017 and 2023 from patients at the Ambulatório Especializado em Hepatites Virais of the Centro de Pesquisa em Medicina Tropical de Rondônia and Serviço de Assistência Especializada and underwent the test developed by this study and a second quantitative RT-qPCR assay. The slope of the initial quantitative assay was − 3.321 with an efficiency of 100.04% and amplification factor equal to 2. Analysis of the repeatability data revealed a Limit of Quantification of 5 copies/reaction and Limit of Detection (95%) of 2.83 copies per reaction. In the diagnostic sensitivity tests, there was an accuracy of 97.37% when compared to the reference test. This assay proved to be highly efficient and reproducible, making it a valuable tool to monitor hepatitis Delta patients and assess the risk of disease progression, as well as the effectiveness of treatment.
Disease burden of congenital Zika virus syndrome in Brazil and its association with socioeconomic data
Authors: de Amorin Vilharba Bruna Luiza , Yamamura Mellina , de Azevedo Micael Viana , Fernandes Wagner de Souza , Santos-Pinto Cláudia Du Bocage , de Oliveira Everton Falcão 
Published: July 2023

AbstractZika virus (ZIKV) infection became a global public health concern, causing an epidemic in Latin America from 2015 to 2016, when a sudden increase in cases of microcephaly and other congenital anomalies was observed. In 2016, the Centers for Disease Control and Prevention and the World Health Organization defined congenital Zika-associated syndrome (CZS) as a set of congenital anomalies seen in children born to mothers with a history of gestational Zika fever, who have microcephaly as the most prevalent clinical sign. In order to describe the magnitude of CZS in Brazil, this study estimated the burden of disease due to CZS in Brazil using the disability-adjusted life years (DALY) indicator and other frequency measures, such as incidence and mortality rate, during the years 2015–2020. The association of these indicators with socioeconomic variables was also evaluated using Spearman's correlation coefficient. Choropleth maps were used to evaluate the spatial distribution of the indicators evaluated and the spatial autocorrelation was verified by the Bivariate Moran Local Index. From 2015 to 2020, 3,591 cases of CZS were confirmed in Brazil, with an incidence of 44.03 cases per 1000 live births, and a specific mortality of 12.35 deaths per 1000 live births. A global loss of 30,027.44 DALYs was estimated from 2015 to 2020. The Northeast region had the highest values for all health indicators assessed. Spatial correlation and autocorrelation analyses showed significant associations between health and socioeconomic indicators, such as per capita income, Gini index, illiteracy rate and basic sanitation. The study allowed us to have access to all reported cases of CZS, showing us the possible situation of the disease in Brazil; therefore, we believe that our results can help in the understanding of future studies.
Catalytic dechlorination of 1,2-DCA in nano Cu0-borohydride system: effects of Cu0/Cun+ ratio, surface poisoning, and regeneration of Cu0 sites
Authors: Boparai Hardiljeet Kaur , El-Sharnouby Omneya , O’Carroll Denis M. 
Published: July 2023

AbstractAqueous-phase catalyzed reduction of organic contaminants via zerovalent copper nanoparticles (nCu0), coupled with borohydride (hydrogen donor), has shown promising results. So far, the research on nCu0 as a remedial treatment has focused mainly on contaminant removal efficiencies and degradation mechanisms. Our study has examined the effects of Cu0/Cun+ ratio, surface poisoning (presence of chloride, sulfides, humic acid (HA)), and regeneration of Cu0 sites on catalytic dechlorination of aqueous-phase 1,2-dichloroethane (1,2-DCA) via nCu0-borohydride. Scanning electron microscopy confirmed the nano size and quasi-spherical shape of nCu0 particles. X-ray diffraction confirmed the presence of Cu0 and Cu2O and x-ray photoelectron spectroscopy also provided the Cu0/Cun+ ratios. Reactivity experiments showed that nCu0 was incapable of utilizing H2 from borohydride left over during nCu0 synthesis and, hence, additional borohydride was essential for 1,2-DCA dechlorination. Washing the nCu0 particles improved their Cu0/Cun+ ratio (1.27) and 92% 1,2-DCA was removed in 7 h with kobs = 0.345 h−1 as compared to only 44% by unwashed nCu0 (0.158 h−1) with Cu0/Cun+ ratio of 0.59, in the presence of borohydride. The presence of chloride (1000–2000 mg L−1), sulfides (0.4–4 mg L−1), and HA (10–30 mg L−1) suppressed 1,2-DCA dechlorination; which was improved by additional borohydride probably via regeneration of Cu0 sites. Coating the particles decreased their catalytic dechlorination efficiency. 85–90% of the removed 1,2-DCA was recovered as chloride. Chloroethane and ethane were main dechlorination products indicating hydrogenolysis as the major pathway. Our results imply that synthesis parameters and groundwater solutes control nCu0 catalytic activity by altering its physico-chemical properties. Thus, these factors should be considered to develop an efficient remedial design for practical applications of nCu0-borohydride.
Priming of Citrullus lanatus var. Colocynthoides seeds in seaweed extract improved seed germination, plant growth and performance under salinity conditions
Authors: Radwan Asmaa M. , Ahmed Entesar A. , Donia Abdelraheim M. , Mustafa Abeer E. , Balah Mohamed A. 
Published: July 2023

AbstractCitrullus lanatus var. Colocynthoide “Gurum” is an unconventional crop that can be utilized as a new source of edible oil and has the ability to grow in a variety of harsh conditions. To mitigate the adverse effects of salinity on seed germination and plant performance of C. lanatus, seeds were primed in the aqueous extracts of the seaweed Ulva lactuca before planting under greenhouse conditions. The aqueous extract of U. lactuca at 8% w/v led to maximal seed germination percentage and seedling growth of C. lanatus. Moreover, U. lactuca extract counteracted the negative effects of salt stress on the plant by significantly increasing the activity of SOD, CAT, and POD. The bioactive components of U. lactuca, e.g. glycine betaine and phenolic compounds can account for such beneficial role of algal extract on C. lanatus. Thus, priming of C. lanatus seeds in U. lactuca extract with various concentrations of U. lactuca extract can be employed as an effective practice for successful seed germination, improved plant growth and enhanced salt resistance, probably as a result of increased antioxidant enzymes activity and photosynthetic pigments.
Potential biomarkers for southern African hunter-gatherer arrow poisons applied to ethno-historical and archaeological samples
Authors: Isaksson Sven , Högberg Anders , Lombard Marlize , Bradfield Justin 
Published: July 2023

AbstractThe detection of complex poison recipes applied to ancient hunting weapons has the potential to provide important insights into traditional pharmacological knowledge systems. Yet, recipes comprising many ingredients can be challenging to decipher, especially in older samples that have undergone biodegradation. We present the results of our attempt to analyze samples of poison collected from nineteenth and twentieth century arrowheads from southern Africa, and from a 1000-year-old archaeological bone point. The arrow poison residues and reference samples were analyzed by Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy (ATR FTIR) and Gas Chromatography Mass Spectrometry (GC–MS). The ATR FTIR analysis is primarily able to separate between different arrow poison binder recipes. The extractives identified by GC–MS analysis consist of a multitude of components from both binders and active substances, confirming and adding to the results from the ATR FTIR analyses. We discuss the results in terms of potential biomarkers for arrow poisons in organic residue analyses of archaeological artefacts; that residues of toxic cardiotonic glycosides can be detected on curated and excavated arrow tips of between about 1000 and 100 years old, serves as proof of concept for working with older materials in the future.
A novel, low-cost microfluidic device with an integrated filter for rapid, ultrasensitive, and high-throughput bioburden detection
Authors: Hasan Md. Sadique , Sundberg Chad , Tolosa Michael , Andar Abhay , Ge Xudong , Kostov Yordan , Rao Govind 
Published: July 2023

AbstractRapid and accurate bioburden detection has become increasingly necessary for food, health, pharmaceutical and environmental applications. To detect bioburden accurately, and in a highly sensitive manner, we have fabricated a novel microfluidic device with an integrated filter to trap the cells. Bioburden is detected on the filter paper in situ using the redox reaction of fluorescent label resorufin and a portable multichannel fluorometer is used for fluorescence measurement. The microfluidic device was fabricated in a facile, low-cost, and rapid way with microwave-induced thermally assisted bonding. To characterize the bonding quality of the microfluidic cassettes, different tests were performed, and the filter paper material and size were optimized. Primary Bacillus subtilis culture bacterial samples were filtered through the device to validate and investigate the performance parameters. Our results show that a limit of detection (LOD) of 0.037 CFU/mL can be achieved through this microfluidic device whereas the LOD in a normal microfluidic cassette in the fluorometer and the golden standard spectrophotometer are 0.378 and 0.128 CFU/mL respectively. The results depict that three to ten times LOD improvement is possible through this microfluidic cassette and more sensitive detection is possible depending on the volume filtered within a rapid 3 min. This novel microfluidic device along with the fluorometer can be used as a rapid portable tool for highly sensitive, accurate and high-throughput bacterial detection for different applications.
Perceived reward attainability may underlie dogs’ responses in inequity paradigms
Authors: McGetrick Jim , Peters Hugo , Korath Anna D. J. , Feitsch Romana , Siegmann Susanne , Range Friederike 
Published: July 2023

AbstractDogs have repeatedly been shown to give their paw to an experimenter more times for no reward when a rewarded conspecific partner is absent than when a rewarded conspecific is present, thereby showing inequity aversion. However, rather than being inequity averse, dogs might give their paw more when a partner is absent due to the experimenter’s procedure in which they move food in front of the subject to mimic feeding a partner. This action could increase subjects’ perception of reward attainability. We tested this hypothesis by introducing an improved type of control condition in which subjects were unrewarded for giving the paw in the presence of a rewarded box, a condition that more closely resembles the inequity condition. Inequity averse subjects’ performance did not differ based on whether the partner was another dog or a box. Moreover, these subjects gave the paw more times when no partner was present and the experimenter mimicked the feeding of a partner than when rewards were placed in the box. These results suggest that responses in the previous studies were inflated by subjects’ increased perception of reward attainability when no partner was present and, therefore, over-exaggerated dogs’ propensity to give up due to inequity aversion.
Features of the response to subchronic low-dose exposure to copper oxide nanoparticles in rats
Authors: Sutunkova Marina P. , Ryabova Yuliya V. , Minigalieva Ilzira A. , Bushueva Tatiana V. , Sakhautdinova Renata R. , Bereza Ivan A. , Shaikhova Daria R. , Amromina Anna M. , Chemezov Aleksei I. , Shelomencev Ivan G. , Amromin Lev A. , Valamina Irene E. , Toropova Liubov V. 
Published: July 2023

AbstractCopper is an essential trace element for human health and, at the same time, a major industrial metal widely used both in its elemental form and in compounds. We conducted a dose-dependent assessment of the response of outbred albino male rats to subchronic low-dose exposure to copper oxide nanoparticles administered intraperitoneally at cumulative doses of 18 and 36 mg/kg during 6 weeks to exposure groups 1 and 2, respectively. We observed disorders at different levels of organization of the body in the exposed animals, from molecular to organismal. The observed decrease in the activity of succinate dehydrogenase in nucleated blood cells gave evidence of impaired bioenergetics processes. In view of the results of the metabolomics analysis, we assume mitochondrial damage and contribution of apoptotic processes to the pathology induced by copper poisoning. We also assume neurodegenerative effects based on the assessed morphological parameters of the nervous system, results of behavioral tests, and a decreased level of expression of genes encoding NMDA receptor subunits in the hippocampus. The hepatotoxic effect noted by a number of metabolomics-based, biochemical, and cytological indicators was manifested by the impaired protein-synthesizing function of the liver and enhanced degenerative processes in its cells. We also observed a nephrotoxic effect of nanosized copper oxide with a predominant lesion of proximal kidney tubules. At the same time, both doses tested demonstrated such positive health effects as a statistically significant decrease in the activity of alkaline phosphatase and the nucleated blood cell DNA fragmentation factor. Judging by the changes observed, the cumulative dose of copper oxide nanoparticles of 18 mg/kg body weight administered intraperitoneally approximates the threshold one for rats. The established markers of health impairments may serve as a starting point in the development of techniques of early diagnosis of copper poisoning.
A telemetry study shows that an endangered nocturnal avian species roosts in extremely dry habitats to avoid predation
Authors: Wasserlauf Yohay , Gancz Ady , Ben Dov Amir , Efrat Ron , Sapir Nir , Dor Roi , Spiegel Orr 
Published: July 2023

AbstractDescribing animal space use is essential for understanding their ecological needs and for planning effective conservation schemes. Notably, certain biomes and life histories are understudied due to methodological challenges in tracking animals in their natural habitats. Specifically, both arid environments and nocturnal species are not sufficiently researched compared to diurnal species and to other biomes. This knowledge gap hinders our ability to properly prioritize habitats for species protection in areas undergoing human-related development. Here, we investigate the movement ecology of the Egyptian Nightjar (Caprimulgus aegyptius) in the arid Dead-sea region of Israel, the Palestinian Authority (the West Bank) and Jordan. This nocturnal insectivore is a cryptic desert-dweller and was considered locally extinct until it was rediscovered in 2016. For this work we tracked twelve individuals using GPS tags to determine how this resource-poor environment affects their home range, (predicting large areas), habitat use, and day-roost ecology. We found that the tracked Egyptian Nightjars had a much larger home range area than other Nightjar species, commuting nightly between foraging grounds and day-roosts. We found, as expected, intensive foraging activity at agricultural fields, where artificial irrigation likely supports higher resource (insect) density. Additionally, we found that individuals showed very high roosting site fidelity, often returning to the same specific site, located in extremely dry and exposed habitats, presumably for predator avoidance. This finding highlights the ecological value of these barren habitats that are often considered “lifeless” and therefore of lower priority for conservation. Consequently, our research demonstrates the importance of describing the space-use of nocturnal animals in arid habitats for conservation efforts.
Joint frequency space design approach for efficient planar frequency diverse arrays
Authors: Hasheminasab Maryam , Cheldavi A. , Kishk Ahmed A. 
Published: July 2023

AbstractAntenna arrays offer advantages in terms of spatial diversity, allowing for control over pattern specifications in space. The incorporation of frequency diversity in arrays presents an opportunity to manipulate beams in the Space–Time domain. Unlike conventional arrays, Frequency Diverse Arrays (FDA) with added frequency diversity exhibit time-variant and range-dependent patterns. These time variations impact both steering and auto-scanning applications. The array factor is influenced by the coherent interplay between frequency and spatial distributions of elements, thereby correlating the spatial and temporal behavior of the FDA’s pattern. To address this space-frequency coherency, an adjoint spatial-frequency design algorithm is the most effective approach to controlling the array's spatial and temporal behavior. Given the complexity of the array factor formulations in FDAs, elements' frequency and spatial distribution have traditionally been designed separately. However, this study proposes an algorithm that simultaneously allocates the location and frequency of elements to achieve a desired pattern. Symmetrical FDA is initially designed using a straightforward formulation of the array factor obtained through symmetry, ensuring a stable and periodic scanning beam. Subsequently, two important design parameters and several crucial design criteria for scanning applications are suggested by analyzing the formulations. These parameters form the basis of a designing algorithm that enables the simultaneous design of element location and frequency in the space-frequency plan, thus meeting the temporal and spatial requirements of the pattern. To demonstrate the efficacy of the proposed algorithm, two different planar arrays are designed, and their results are compared with those of other planar configurations. This study lays the foundation for a novel approach to designing Frequency Diverse Arrays (FDAs), opening up new possibilities in array design.