bluuebunny/crossref_metadata_2025_split huggingface dataset:
Analgesics and ASH medications in workers increase the risk of disability pension and mortality: prospective cohort
Authors: Andersen Lars Louis , Vinstrup Jonas , Calatayud Joaquín , López-Bueno Rubén , Clausen Thomas , Manniche Claus 
Published: June 2023

Abstract

Background
Relying on medication for musculoskeletal and mental disorders are common, but may have long-term consequences. This study investigates whether use of analgesics and anxiolytic/sedative/hypnotic (ASH) medication increases the risk of disability pension and mortality.

Methods
After completing a survey in 2005, 7773 female eldercare workers were followed for 11 years in a national register. We estimated hazard ratios (HRs) for disability pension and mortality from using analgesics and ASH.

Results
During follow-up, 10.3% obtained disability pension and 2.4% died. For use of analgesics, a frequency-response association for the risk of disability pension existed with HR’s (95% confidence interval) of 1.30 (1.07–1.57), 2.00 (1.62–2.46) and 3.47 (2.69–4.47) for monthly, weekly and daily use, respectively. For ASH, an increased risk of disability pension also existed (HR’s between 1.51 and 1.64). For mortality risk, only daily use of analgesics and ASH remained significant. Population attributable fractions of analgesics and ASH, respectively, were 30% and 3% for disability pension and 5% and 3% for mortality.

Conclusions
Frequent use of analgesics and ASH medication in workers increase the risk of disability pension and early death. Better management of musculoskeletal and mental health conditions, without excessive medication use, is necessary.
Effects of population size change on the genetics of adaptation following an abrupt change in environment
Authors: McDonough Yasmine , Connallon Tim 
Published: June 2023

Abstract
Since the rediscovery of Mendelian genetics over a century ago, there has been much debate about the evolutionary importance of mutations with large phenotypic effects. While population genetic models predict that large-effect mutations will typically contribute to adaptation following an abrupt change in environment, the prediction applies to populations of stable size and overlooks the effects of population size change on adaptation (e.g., population decline following habitat loss; growth during range expansion). We evaluate the phenotypic and fitness effects of mutations contributing to adaptation immediately following an abrupt environmental shift that alters both selection and population size dynamics. We show that large-effect mutations are likely to contribute to adaptation in populations declining to a new carrying capacity, somewhat smaller-effect mutations contribute to evolutionary rescue, and small-effect mutations predominate in growing populations. We also show that the relative contributions of positively selected and overdominant mutations to adaptation depend on interactions between the phenotypic effect size distribution for new mutations and the specific form of population size change during adaptation (i.e., growth, decline, or evolutionary rescue). Our results illustrate how population size dynamics can shape the genetic basis of adaptation, which should motivate empirical comparisons of populations adapting in different demographic contexts.
Development of a visual detection method for Salmonella based on loop-mediated isothermal amplification using pyrophosphatase
Authors: Liu Wenbo , Zhang Shuai , Chen Chang , Jin Junhua , Liu Hui , Bian Zheng , Qi Wenjing , Xie Yuanhong , Zhang Hongxing 
Published: June 2023

Abstract
Salmonella is one of the most widely distributed and harmful food-borne pathogens; thus, the rapid detection of viable Salmonella is important for ensuring food safety. In this study, a rapid visual strategy based on loop-mediated isothermal amplification (LAMP) with the addition of thermal inorganic pyrophosphatase and linked with an ammonium molybdate chromogenic buffer was established to detect Salmonella. Specific primers were designed based on the phoP gene of Salmonella spp. The pyrophosphatase concentration, LAMP time, addition of ammonium molybdate chromogenic buffer, and color reaction time were optimized. Based on the optimal conditions, the sensitivity and specificity of the method were examined. In addition, the ability to detect actual samples was verified using apple juice containing Salmonella. LAMP was performed at 65°C for 45 min in the presence of thermal inorganic pyrophosphatase at a final concentration of 4 U mL−1, and 20 μL of the LAMP product was reacted with 50 μL of phosphate chromogenic buffer at 25°C for 15 min. According to our results, the limit of detection of the LAMP assay for viable Salmonella was 1.83 × 102 CFU per reaction, and nonspecific amplification was not observed. The detection rates of Salmonella Typhimurium with different concentrations in apple juice were 89.11% to 94.80%, which verifies that the visual detection strategy is suitable for actual sample detection.
Different culture media and purification methods unveil the core proteome of Propionibacterium freudenreichii-derived extracellular vesicles
Authors: Rodovalho Vinícius de Rezende , da Luz Brenda Silva Rosa , Nicolas Aurélie , Jardin Julien , Briard-Bion Valérie , Folador Edson Luiz , Santos Anderson Rodrigues , Jan Gwénaël , Loir Yves Le , Azevedo Vasco Ariston de Carvalho , Guédon Éric 
Published: June 2023

Abstract
Bacterial extracellular vesicles (EVs) are natural lipidic nanoparticles implicated in intercellular communication. Although EV research focused mainly on pathogens, the interest in probiotic-derived EVs is now rising. One example is Propionibacterium freudenreichii, which produces EVs with anti-inflammatory effects on human epithelial cells. Our previous study with P. freudenreichii showed that EVs purified by size exclusion chromatography (SEC) displayed variations in protein content according to bacterial growth conditions. Considering these content variations, we hypothesized that a comparative proteomic analysis of EVs recovered in different conditions would elucidate whether a representative vesicular proteome existed, possibly providing a robust proteome dataset for further analysis. Therefore, P. freudenreichii was grown in two culture media, and EVs were purified by sucrose density gradient ultracentrifugation (UC). Microscopic and size characterization confirmed EV purification, while shotgun proteomics unveiled that they carried a diverse set of proteins. A comparative analysis of the protein content of UC- and SEC-derived EVs, isolated from cultures either in UF (cow milk ultrafiltrate medium) or YEL (laboratory yeast extract lactate medium), showed that EVs from all these conditions shared 308 proteins. This EV core proteome was notably enriched in proteins related to immunomodulation. Moreover, it showed distinctive features, including highly interacting proteins, compositional biases for some specific amino acids, and other biochemical parameters. Overall, this work broadens the toolset for the purification of P. freudenreichii-derived EVs, identifies a representative vesicular proteome, and enumerates conserved features in vesicular proteins. These results hold the potential for providing candidate biomarkers of purification quality, and insights into the mechanisms of EV biogenesis and cargo sorting.
Hydrogen sulfide production during early yeast fermentation correlates with volatile sulfur compound biogenesis but not thiol release
Authors: Hou Ruoyu , Jelley Rebecca E , van Leeuwen Katryna A , Pinu Farhana R , Fedrizzi Bruno , Deed Rebecca C 
Published: June 2023

Abstract
Yeasts undergo intensive metabolic changes during the early stages of fermentation. Previous reports suggest the early production of hydrogen sulfide (H2S) is associated with the release of a range of volatile sulfur compounds (VSCs), as well as the production of varietal thiol compounds 3-sulfanylhexan-1-ol (3SH) and 3-sulfanylhexyl acetate (3SHA) from six-carbon precursors, including (E)-hex-2-enal. In this study, we investigated the early H2S potential, VSCs/thiol output, and precursor metabolism of 11 commonly used laboratory and commercial Saccharomyces cerevisiae strains in chemically defined synthetic grape medium (SGM) within 12 h after inoculation. Considerable variability in early H2S potential was observed among the strains surveyed. Chemical profiling suggested that early H2S production correlates with the production of dimethyl disulfide, 2-mercaptoethanol, and diethyl sulfide, but not with 3SH or 3SHA. All strains were capable of metabolizing (E)-hex-2-enal, while the F15 strain showed significantly higher residue at 12 h. Early production of 3SH, but not 3SHA, can be detected in the presence of exogenous (E)-hex-2-enal and H2S. Therefore, the natural variability of early yeast H2S production contributes to the early output of selected VSCs, but the threshold of which is likely not high enough to contribute substantially to free varietal thiols in SGM.
Near-Chromosomal-Level Genome Assembly of the Sea Urchin Echinometra lucunter, a Model for Speciation in the Sea
Authors: Davidson Phillip L , Lessios Harilaos A , Wray Gregory A , McMillan W Owen , Prada Carlos 
Published: June 2023

Abstract
Echinometra lucunter, the rock-boring sea urchin, is a widely distributed echinoid and a model for ecological studies of reproduction, responses to climate change, and speciation. We present a near chromosome-level genome assembly of E. lucunter, including 21 scaffolds larger than 10 Mb predicted to represent each of the chromosomes of the species. The 760.4 Mb assembly includes a scaffold N50 of 30.0 Mb and BUSCO (benchmarking universal single-copy orthologue) single copy and a duplicated score of 95.8% and 1.4%, respectively. Ab-initio gene model prediction and annotation with transcriptomic data constructed 33,989 gene models composing 50.4% of the assembly, including 37,036 transcripts. Repetitive elements make up approximately 39.6% of the assembly, and unresolved gap sequences are estimated to be 0.65%. Whole genome alignment with Echinometra sp. EZ revealed high synteny and conservation between the two species, further bolstering Echinometra as an emerging genus for comparative genomics studies. This genome assembly represents a high-quality genomic resource for future evolutionary and developmental studies of this species and more broadly of echinoderms.
A primary microcephaly-associated sas-6 mutation perturbs centrosome duplication, dendrite morphogenesis, and ciliogenesis in Caenorhabditis elegans
Authors: Bergwell Mary , Smith Amy , Smith Ellie , Dierlam Carter , Duran Ramon , Haastrup Erin , Napier-Jameson Rebekah , Seidel Rory , Potter William , Norris Adam , Iyer Jyoti 
Published: June 2023

Abstract
The human SASS6(I62T) missense mutation has been linked with the incidence of primary microcephaly in a Pakistani family, although the mechanisms by which this mutation causes disease remain unclear. The SASS6(I62T) mutation corresponds to SAS-6(L69T) in Caenorhabditis elegans. Given that SAS-6 is highly conserved, we modeled this mutation in C. elegans and examined the sas-6(L69T) effect on centrosome duplication, ciliogenesis, and dendrite morphogenesis. Our studies revealed that all the above processes are perturbed by the sas-6(L69T) mutation. Specifically, C. elegans carrying the sas-6(L69T) mutation exhibit an increased failure of centrosome duplication in a sensitized genetic background. Further, worms carrying this mutation also display shortened phasmid cilia, an abnormal phasmid cilia morphology, shorter phasmid dendrites, and chemotaxis defects. Our data show that the centrosome duplication defects caused by this mutation are only uncovered in a sensitized genetic background, indicating that these defects are mild. However, the ciliogenesis and dendritic defects caused by this mutation are evident in an otherwise wild-type background, indicating that they are stronger defects. Thus, our studies shed light on the novel mechanisms by which the sas-6(L69T) mutation could contribute to the incidence of primary microcephaly in humans.
Demographic history inference and the polyploid continuum
Authors: Blischak Paul D , Sajan Mathews , Barker Michael S , Gutenkunst Ryan N 
Published: June 2023

Abstract
Polyploidy is an important generator of evolutionary novelty across diverse groups in the Tree of Life, including many crops. However, the impact of whole-genome duplication depends on the mode of formation: doubling within a single lineage (autopolyploidy) versus doubling after hybridization between two different lineages (allopolyploidy). Researchers have historically treated these two scenarios as completely separate cases based on patterns of chromosome pairing, but these cases represent ideals on a continuum of chromosomal interactions among duplicated genomes. Understanding the history of polyploid species thus demands quantitative inferences of demographic history and rates of exchange between subgenomes. To meet this need, we developed diffusion models for genetic variation in polyploids with subgenomes that cannot be bioinformatically separated and with potentially variable inheritance patterns, implementing them in the dadi software. We validated our models using forward SLiM simulations and found that our inference approach is able to accurately infer evolutionary parameters (timing, bottleneck size) involved with the formation of auto- and allotetraploids, as well as exchange rates in segmental allotetraploids. We then applied our models to empirical data for allotetraploid shepherd’s purse (Capsella bursa-pastoris), finding evidence for allelic exchange between the subgenomes. Taken together, our model provides a foundation for demographic modeling in polyploids using diffusion equations, which will help increase our understanding of the impact of demography and selection in polyploid lineages.
Between-Person and Daily Within-Person Variation Patterns in Measures of Views of Aging
Authors: O’Brien Erica L , Smyth Joshua M 
Published: June 2023

Abstract

Objectives
Recent work suggests that views of aging (VOA; a meta-construct reflective of individuals’ aging-related thoughts, beliefs, feelings, and experiences) fluctuate within persons in day-to-day life. This study characterized the extent of daily variability in VOA and explored differences in variability patterns based on measure to enhance understanding of the dynamic nature of VOA.

Methods
An online sample of 122 adults aged 26–78 years completed multiple measures of VOA (subjective age, age group identity, aging attitudes, implicit theories of aging, awareness of age-related losses or gains) on each of 7 consecutive days. We partitioned variance in responses to each measure at the person level and day level to assess between-person and within-person variability, respectively.

Results
Between-person variability accounted for most of the total observed variation in VOA, whereas within-person variability accounted for a smaller amount. Different measures exhibited different ratios of between-person to within-person variation, with the lowest ratios observed for subjective age. Exploration of potential differences between age groups also suggests lower ratios in younger compared to older adults.

Discussion
Analyses suggest relative stability in daily measures of VOA over a 1-week period. Further study of measures (and age groups) showing greater within-person variability (evidenced by lower ratios of between-person to within-person variation) can increase understanding about constructs with greater sensitivity to fluctuating contexts. It can also inform future work linking VOA to other phenomenon in daily life.
Public sector’s misinformation debunking during the public health campaign: a case of Hong Kong
Authors: Zhu Rui , Zhang Xinzhi 
Published: June 2023

Abstract
For a public health campaign to succeed, the public sector is expected to debunk the misinformation transparently and vividly and guide the citizens. The present study focuses on COVID-19 vaccine misinformation in Hong Kong, a non-Western society with a developed economy and sufficient vaccine supply but high vaccine hesitancy. Inspired by the Health Belief Model (HBM) and research on source transparency and the use of visuals in the debunking, the present study examines the COVID-19 vaccine misinformation debunking messages published by the official social media and online channels of the public sector of Hong Kong (n = 126) over 18 months (1 November 2020 to 20 April 2022) during the COVID-19 vaccination campaign. Results showed that the most frequently occurring misinformation themes were misleading claims about the risks and side effects of vaccination, followed by (non-)effectiveness of the vaccines and the (un)-necessity of vaccination. Among the HBM constructs, barriers and benefits of vaccination were mentioned the most, while self-efficacy was the least addressed. Compared with the early stage of the vaccination campaign, an increasing number of posts contained susceptibility, severity or cues to action. Most debunking statements did not disclose any external sources. The public sector actively used illustrations, with affective illustrations outnumbering cognitive ones. Suggestions for improving the quality of misinformation debunking during public health campaigns are discussed.
The enduring role of sense of coherence in facing the pandemic
Authors: Danioni Francesca , Barni Daniela , Ferrari Laura , Ranieri Sonia , Canzi Elena , Iafrate Raffaella , Lanz Margherita , Regalia Camillo , Rosnati Rosa 
Published: June 2023

Abstract
Research has been focussing on protective and resistance-related factors that may help people face the long-lasting psychological challenges of the COVID-19 pandemic. Sense of coherence allows to remain healthy and to recover after stressful or traumatic life experiences. We aimed at investigating whether, and the extent to which, social support, in terms of both family and friends support, mediated the well-established link between sense of coherence and mental health as well as that between sense of coherence and COVID-19–related Post-Traumatic Stress Disorder (PTSD) symptoms. In May 2021, 3048 Italian respondents (51.5% women) aged between 18 and 91 (Mage = 48.33, SD = 14.04) filled in a self-report questionnaire. The mediation analyses we carried out on their responses showed a difference between focussing on mental health or on a psychological disorder. Indeed, despite the respectively positive and negative relation between sense of coherence and mental health and PTSD symptoms, this confirming the protective role of sense of coherence more than 1 year after the beginning of the pandemic, social support only mediated, partially, the former link. We also discuss practical implications and further expansion of the study.
Mechanistic Hypotheses for Proprioceptive Sensing Within the Avian Lumbosacral Spinal Cord
Authors: Stanchak Kathryn E , Miller Kimberly E , Shikiar Devany , Brunton Bingni W , Perkel David J 
Published: June 2023

Synopsis
Animals need to accurately sense changes in their body position to perform complex movements. It is increasingly clear that the vertebrate central nervous system contains a variety of cells capable of detecting body motion, in addition to the comparatively well-understood mechanosensory cells of the vestibular system and the peripheral proprioceptors. One such intriguing system is the lower spinal cord and column in birds, also known as the avian lumbosacral organ (LSO), which is thought to act as a set of balance sensors that allow birds to detect body movements separately from head movements detected by the vestibular system. Here, we take what is known about proprioceptive, mechanosensory spinal neurons in other vertebrates to explore hypotheses for how the LSO might sense mechanical information related to movement. Although the LSO is found only in birds, recent immunohistochemical studies of the avian LSO have hinted at similarities between cells in the LSO and the known spinal proprioceptors in other vertebrates. In addition to describing possible connections between avian spinal anatomy and recent findings on spinal proprioception as well as sensory and sensorimotor spinal networks, we also present some new data that suggest a role for sensory afferent peptides in LSO function. Thus, this perspective articulates a set of testable ideas on mechanisms of LSO function grounded in the emerging spinal proprioception scientific literature.
The user state: an alternative reading of the state role and duty in the age of platformized harm
Authors: Wodajo Kebene 
Published: June 2023

Abstract
States are increasingly delegating their regulatory functions to social media platforms to censor information, and the risk of a state retreat from the regulatory space has been extensively discussed. However, little is said about what this means when the state becomes a user of the same platform from which it retreats as a regulator—and more importantly relies on its user capacity to configure and repress public opinion. This article asks how we go about contextualizing the evolving nature of state violation of rights and freedoms on social media platforms and the state’s dereliction of duty? It argues that the changing dynamic represents a process by which power reproduces itself by linking state and corporate interests to the detriment of the people. Using perspectives from business and human rights and the Afro-centric conception of human rights, it presents an alternative reading of state duty for digital wrongdoing.
Multilevel quasi-Monte Carlo for random elliptic eigenvalue problems I: regularity and error analysis
Authors: Gilbert Alexander D , Scheichl Robert 
Published: June 2023

Abstract
Stochastic partial differential equation (PDE) eigenvalue problems are useful models for quantifying the uncertainty in several applications from the physical sciences and engineering, e.g., structural vibration analysis, the criticality of a nuclear reactor or photonic crystal structures. In this paper we present a multilevel quasi-Monte Carlo (MLQMC) method for approximating the expectation of the minimal eigenvalue of an elliptic eigenvalue problem with coefficients that are given as a series expansion of countably-many stochastic parameters. The MLQMC algorithm is based on a hierarchy of discretizations of the spatial domain and truncations of the dimension of the stochastic parameter domain. To approximate the expectations, randomly shifted lattice rules are employed. This paper is primarily dedicated to giving a rigorous analysis of the error of this algorithm. A key step in the error analysis requires bounds on the mixed derivatives of the eigenfunction with respect to both the stochastic and spatial variables simultaneously. Under stronger smoothness assumptions on the parametric dependence, our analysis also extends to multilevel higher-order quasi-Monte Carlo rules. An accompanying paper (Gilbert, A. D. & Scheichl, R. (2023) Multilevel quasi-Monte Carlo methods for random elliptic eigenvalue problems II: efficient algorithms and numerical results. IMA J. Numer. Anal.) focusses on practical extensions of the MLQMC algorithm to improve efficiency and presents numerical results.