bluuebunny/crossref_metadata_2025_split huggingface dataset:
Broad host tropism of ACE2-using MERS-related coronaviruses and determinants restricting viral recognition
Authors: Ma Chengbao , Liu Chen , Xiong Qing , Gu Mengxue , Shi Lulu , Wang Chunli , Si Junyu , Tong Fei , Liu Peng , Huang Meiling , Yan Huan 
Published: June 2023

AbstractRecently, two Middle East respiratory syndrome coronavirus (MERS-CoV) closely related to bat merbecoviruses, NeoCoV and PDF-2180, were discovered to use angiotensin-converting enzyme 2 (ACE2) for entry. The two viruses cannot use human ACE2 efficiently, and their host range and cross-species transmissibility across a wide range of mammalian species remain unclear. Herein, we characterized the species-specific receptor preference of these viruses by testing ACE2 orthologues from 49 bats and 53 non-bat mammals through receptor-binding domain (RBD)-binding and pseudovirus entry assays. Results based on bat ACE2 orthologues revealed that the two viruses were unable to use most, but not all, ACE2 from Yinpterochiropteran bats (Yin-bats), which is distinct from NL63 and SARS-CoV-2. Besides, both viruses exhibited broad receptor recognition spectra across non-bat mammals. Genetic and structural analyses of bat ACE2 orthologues highlighted four crucial host range determinants, all confirmed by subsequent functional assays in human and bat cells. Notably, residue 305, participating in a critical viral receptor interaction, plays a crucial role in host tropism determination, particularly in non-bat mammals. Furthermore, NeoCoV and PDF-2180 mutants with enhanced human ACE2 recognition expanded the potential host range, especially by enhancing their interaction with an evolutionarily conserved hydrophobic pocket. Our results elucidate the molecular basis for the species-specific ACE2 usage of MERS-related viruses and shed light on their zoonotic risks.
Whole-mount smFISH allows combining RNA and protein quantification at cellular and subcellular resolution
Authors: Zhao Lihua , Fonseca Alejandro , Meschichi Anis , Sicard Adrien , Rosa Stefanie 
Published: June 2023

AbstractMulticellular organisms result from complex developmental processes largely orchestrated through the quantitative spatiotemporal regulation of gene expression. Yet, obtaining absolute counts of messenger RNAs at a three-dimensional resolution remains challenging, especially in plants, owing to high levels of tissue autofluorescence that prevent the detection of diffraction-limited fluorescent spots. In situ hybridization methods based on amplification cycles have recently emerged, but they are laborious and often lead to quantification biases. In this article, we present a simple method based on single-molecule RNA fluorescence in situ hybridization to visualize and count the number of mRNA molecules in several intact plant tissues. In addition, with the use of fluorescent protein reporters, our method also enables simultaneous detection of mRNA and protein quantity, as well as subcellular distribution, in single cells. With this method, research in plants can now fully explore the benefits of the quantitative analysis of transcription and protein levels at cellular and subcellular resolution in plant tissues.
Biome-scale temperature sensitivity of ecosystem respiration revealed by atmospheric CO2 observations
Authors: Sun Wu , Luo Xiangzhong , Fang Yuanyuan , Shiga Yoichi P. , Zhang Yao , Fisher Joshua B. , Keenan Trevor F. , Michalak Anna M. 
Published: June 2023

AbstractThe temperature sensitivity of ecosystem respiration regulates how the terrestrial carbon sink responds to a warming climate but has been difficult to constrain observationally beyond the plot scale. Here we use observations of atmospheric CO2 concentrations from a network of towers together with carbon flux estimates from state-of-the-art terrestrial biosphere models to characterize the temperature sensitivity of ecosystem respiration, as represented by the Arrhenius activation energy, over various North American biomes. We infer activation energies of 0.43 eV for North America and 0.38 eV to 0.53 eV for major biomes therein, which are substantially below those reported for plot-scale studies (approximately 0.65 eV). This discrepancy suggests that sparse plot-scale observations do not capture the spatial-scale dependence and biome specificity of the temperature sensitivity. We further show that adjusting the apparent temperature sensitivity in model estimates markedly improves their ability to represent observed atmospheric CO2 variability. This study provides observationally constrained estimates of the temperature sensitivity of ecosystem respiration directly at the biome scale and reveals that temperature sensitivities at this scale are lower than those based on earlier plot-scale studies. These findings call for additional work to assess the resilience of large-scale carbon sinks to warming.
Magnetic flux trapping in hydrogen-rich high-temperature superconductors
Authors: Minkov V. S. , Ksenofontov V. , Bud’ko S. L. , Talantsev E. F. , Eremets M. I. 
Published: June 2023

Abstract
Recent discoveries of superconductivity in various hydrides at high pressures have shown that a critical temperature of superconductivity can reach near-room-temperature values. However, experimental studies are limited by high-pressure conditions, and electrical transport measurements have been the primary technique for detecting superconductivity in hydrides. Here we implement a non-conventional protocol for the magnetic measurements of superconductors in a SQUID magnetometer and probe the trapped magnetic flux in two near-room-temperature superconductors H3S and LaH10 at high pressures. Contrary to traditional magnetic susceptibility measurements, the magnetic response from the trapped flux is almost unaffected by the background signal of the diamond anvil cell due to the absence of external magnetic fields. The behaviour of the trapped flux generated under zero-field-cooled and field-cooled conditions proves the existence of superconductivity in these materials. We reveal that the absence of a pronounced Meissner effect is associated with the very strong pinning of vortices inside the samples. This approach can also be a tool for studying multiphase samples or samples that have a low superconducting fraction at ambient pressure.
Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos
Authors: Rekaik Hocine , Lopez-Delisle Lucille , Hintermann Aurélie , Mascrez Bénédicte , Bochaton Célia , Mayran Alexandre , Duboule Denis 
Published: June 2023

AbstractDuring development, Hox genes are temporally activated according to their relative positions on their clusters, contributing to the proper identities of structures along the rostrocaudal axis. To understand the mechanism underlying this Hox timer, we used mouse embryonic stem cell-derived stembryos. Following Wnt signaling, the process involves transcriptional initiation at the anterior part of the cluster and a concomitant loading of cohesin complexes enriched on the transcribed DNA segments, that is, with an asymmetric distribution favoring the anterior part of the cluster. Chromatin extrusion then occurs with successively more posterior CTCF sites acting as transient insulators, thus generating a progressive time delay in the activation of more posterior-located genes due to long-range contacts with a flanking topologically associating domain. Mutant stembryos support this model and reveal that the presence of evolutionary conserved and regularly spaced intergenic CTCF sites controls the precision and the pace of this temporal mechanism.
A high spatial resolution dataset of China’s biomass resource potential
Authors: Wang Rui , Cai Wenjia , Yu Le , Li Wei , Zhu Lei , Cao Bowen , Li Jin , Shen Jianxiang , Zhang Shihui , Nie Yaoyu , Wang Can 
Published: June 2023

AbstractAssessing biomass resource potential is essential for China’s ambitious goals of carbon neutrality, rural revitalization, and poverty eradication. To fill the data gap of high spatial resolution biomass resources in China, this study estimates the biomass resource potential for all types of lignocellulosic biomass feedstock at 1 km resolution in 2018, including 9 types of agricultural residues, 11 types of forestry residues, and 5 types of energy crops. By combining the statistical accounting method and the GIS-based method, this study develops a transparent and comprehensive assessment framework, which is in accordance with the principle of food security, forest land and pasture protection, and biodiversity protection. In the end, we organize and store the data in different formats (GeoTIFF, NetCDF, and Excel) for GIS users, integrated modelers, and policymakers. The reliability of this high spatial resolution dataset has been proved by comparing the aggregated data at the subnational and national levels with the existing literature. This dataset has numerous potential uses and is a crucial input to many bioenergy-related studies.
DFT and QSAR studies of PTFE/ZnO/SiO2 nanocomposite
Authors: Ezzat Hend A. , Hegazy Maroof A. , Ghoneim Rasha , Zahran Heba Y. , Yahia Ibrahim S. , Elhaes Hanan , Refaat Ahmed , Ibrahim Medhat A. 
Published: June 2023

AbstractPolytetrafluoroethylene (PTFE) is one of the most significant fluoropolymers, and one of the most recent initiatives is to increase its performance by using metal oxides (MOs). Consequently, the surface modifications of PTFE with two metal oxides (MOs), SiO2 and ZnO, individually and as a mixture of the two MOs, were modeled using density functional theory (DFT). The B3LYPL/LANL2DZ model was used in the studies conducted to follow up the changes in electronic properties. The total dipole moment (TDM) and HOMO/LUMO band gap energy (∆E) of PTFE, which were 0.000 Debye and 8.517 eV respectively, were enhanced to 13.008 Debye and 0.690 eV in the case of PTFE/4ZnO/4SiO2. Moreover, with increasing nano filler (PTFE/8ZnO/8SiO2), TDM changed to 10.605 Debye and ∆E decreased to 0.273 eV leading to further improvement in the electronic properties. The molecular electrostatic potential (MESP) and quantitative structure activity relationship (QSAR) studies revealed that surface modification of PTFE with ZnO and SiO2 increased its electrical and thermal stability. The improved PTFE/ZnO/SiO2 composite can, therefore, be used as a self-cleaning layer for astronaut suits based on the findings of relatively high mobility, minimal reactivity to the surrounding environment, and thermal stability.
Visiting nature is associated with lower socioeconomic inequalities in well-being in Wales
Authors: Garrett Joanne K. , Rowney Francis M. , White Mathew P. , Lovell Rebecca , Fry Rich J. , Akbari Ashley , Geary Rebecca , Lyons Ronan A. , Mizen Amy , Nieuwenhuijsen Mark , Parker Chrissie , Song Jiao , Stratton Gareth , Thompson Daniel A. , Watkins Alan , White James , Williams Susan A. , Rodgers Sarah E. , Wheeler Benedict W. 
Published: June 2023

AbstractNatural environments can promote well-being through multiple mechanisms. Many studies have investigated relationships between residential green/blue space (GBS) and well-being, fewer explore relationships with actual use of GBS. We used a nationally representative survey, the National Survey for Wales, anonymously linked with spatial GBS data to investigate associations of well-being with both residential GBS and time in nature (N = 7631). Both residential GBS and time spent in nature were associated with subjective well-being. Higher green-ness was associated with lower well-being, counter to hypotheses (predicting the Warwick and Edinburgh Mental Well-Being Scale (WEMWBS): Enhanced vegetation index β =  − 1.84, 95% confidence interval (CI) − 3.63, − 0.05) but time spent in nature was associated with higher well-being (four hours a week in nature vs. none β = 3.57, 95% CI 3.02, 4.13). There was no clear association between nearest GBS proximity and well-being. In support of the equigenesis theory, time spent in nature was associated with smaller socioeconomic inequalities in well-being. The difference in WEMWBS (possible range 14–70) between those who did and did not live in material deprivation was 7.7 points for those spending no time in nature, and less at 4.5 points for those spending time in nature up to 1 h per week. Facilitating access and making it easier for people to spend time in nature may be one way to reduce socioeconomic inequalities in well-being.
Characterization of a new natural novel lignocellulose fiber resource from the stem of Cyperus platystylis R.Br.
Authors: Bhunia Anup Kumar , Mondal Dheeman , Parui Sanjukta Mondal , Mondal Amal Kumar 
Published: June 2023

AbstractThis study deals with the characterization of a natural fiber which is extracted from the stem of an unexplored plant of Cyperus platystylis R.Br. (CPS) with an aim to establish it as a potent alternative fiber for the plant fiber-based industries. CPS fiber has been investigated for its physical, chemical, thermal, mechanical, and morphological characteristics. The presence of different functional groups in CPS fiber i.e., cellulose, hemicellulose, and lignin which was ensured by Fourier Transformed Infrared (FTIR) Spectrophotometer analysis. X-ray diffraction and chemical constituent analysis revealed high cellulose content and crystallinity i.e., 66.1% and 41.12% respectively, which is comparatively moderate in the case of CPS fiber. Scherrer's equation has been used to determine crystallite size i.e., 2.28 nm. The mean length and diameter of the CPS fiber were 382.0 and 23.36 μm, respectively. The maximum tensile strength was obtained at 657 ± 58.8 MPa for 50 mm fiber and young’s modulus 88.76 ± 30.42 MPa for 50 mm fiber. The required energy to break has been recorded at 346.16 J. Thermal analysis revealed that CPS fibers have thermal stability up to 279 °C. The unique Cyperus platystylis stem fibers could therefore be a suitable reinforcement material for the bio-composites used in semi-structural applications since they have higher functional qualities.
The flow of an Eyring Powell Nanofluid in a porous peristaltic channel through a porous medium
Authors: Nadeem Sohail , Mushtaq Aiman , Alzabut Jehad , Ghazwani Hassan Ali , Eldin Sayed M. 
Published: June 2023

AbstractIn a porous medium, we have examined sinusoidal two-dimensional transport enclosed porous peristaltic boundaries having an Eyring Powell fluid with a water containing $$\text{Al}_{2}{\text{O}}_{3}$$

Al
2

O
3

. The determining momentum and temperature equations are solved semi-analytically by using regular perturbation method and Mathematica. In present research only free pumping case and small amplitude ratio is studied. Mathematical and pictorial consequences are investigated for distinct physical parameters of interest like porosity, viscosity, volume fraction and permeability to check the effects of flow velocity and temperature.
Electrospun nanofiber membrane diameter prediction using a combined response surface methodology and machine learning approach
Authors: Pervez Md. Nahid , Yeo Wan Sieng , Mishu Mst. Monira Rahman , Talukder Md. Eman , Roy Hridoy , Islam Md. Shahinoor , Zhao Yaping , Cai Yingjie , Stylios George K. , Naddeo Vincenzo 
Published: June 2023

AbstractDespite the widespread interest in electrospinning technology, very few simulation studies have been conducted. Thus, the current research produced a system for providing a sustainable and effective electrospinning process by combining the design of experiments with machine learning prediction models. Specifically, in order to estimate the diameter of the electrospun nanofiber membrane, we developed a locally weighted kernel partial least squares regression (LW-KPLSR) model based on a response surface methodology (RSM). The accuracy of the model's predictions was evaluated based on its root mean square error (RMSE), its mean absolute error (MAE), and its coefficient of determination (R2). In addition to principal component regression (PCR), locally weighted partial least squares regression (LW-PLSR), partial least square regression (PLSR), and least square support vector regression model (LSSVR), some of the other types of regression models used to verify and compare the results were fuzzy modelling and least square support vector regression model (LSSVR). According to the results of our research, the LW-KPLSR model performed far better than other competing models when attempting to forecast the membrane's diameter. This is made clear by the much lowerRMSEandMAEvalues of the LW-KPLSR model. In addition, it offered the highest R2values that could be achieved, reaching 0.9989.
Magnetic field coupling with lunar soil simulants
Authors: Garman Shanti M. , Roth Melissa C. , Roux Vincent G. , Smith Joshua R. 
Published: June 2023

AbstractWireless power transfer (WPT) using magnetically coupled resonators is being integrated into space vehicles destined for the lunar surface. The dusty soil on the Moon, called lunar regolith, is known to adhere to surfaces and is also known to contain iron, including iron oxides and metallic iron. Regolith samples are limited, and lunar soil simulants are commonly used in space science research for efforts in surface vehicle navigation, in-situ resource utilization, and power infrastructure. However, most simulants contain no metallic iron, and research involving electromagnetic field interactions with regolith would benefit from incorporating metallic iron into test samples. This work presents experimental results from tests using WPT with magnetically coupled resonators in the presence of various standard lunar simulants, plus a new iron-enriched simulant and metallic iron powders. Results for power transfer efficiency, thermal response, and frequency response are presented and demonstrate that the presence of metallic iron and its particle size are critical factors affecting the coupling of the incident magnetic field with lunar simulants and iron powder samples. The importance of particle size-to-skin depth ratio is discussed. Attenuation constants for various iron powders are estimated from experimental data and compared to those of lunar regolith and simulants.
Biogenic apatite in carbonate concretions with and without fossils investigated in situ by micro-Raman spectroscopy
Authors: Kitanaka Ryosuke , Tsuboi Motohiro , Ozaki Yukihiro 
Published: June 2023

AbstractMicro-Raman spectra of concretions with and without fossils were measured in a nondestructive manner. The band position and full width at half maximum height (FWHM) of ν1-PO43− of apatite in the concretions were analyzed to investigate the origin of apatite. The analyzed concretions were derived from the Kita-ama Formation of the Izumi Group, Japan. The micro-Raman analysis showed that the apatites in the concretions were divided into two groups: Group W (wide FWHM group) and Group N (narrow FWHM group). The apatite belonging to Group W is suggested to be biogenic apatite originating from the soft body tissues of organisms because the Sr content is high and the FWHM is similar to that of apatite in bones and teeth of present-day animals. The other apatite belonging to Group N is considered affected by the diagenetic process because of its narrow FWHM and F substitution. These features of both groups were observed regardless of the presence of fossils or absence of fossils in the concretions. This Raman spectroscopic study suggests that the apatite at the time of concretion formation belonged to Group W but was changed to Group N by the substitution of F during the diagenesis process.
Intrathecal Th17-driven inflammation is associated with prolonged post-treatment convalescence for patients with Lyme neuroborreliosis
Authors: Gyllemark Paula , Sjöwall Johanna , Forsberg Pia , Ernerudh Jan , Henningsson Anna J. 
Published: June 2023

AbstractLyme neuroborreliosis (LNB) is associated with increased levels of pro-inflammatory cytokines and chemokines in the cerebrospinal fluid (CSF). Residual symptoms after antibiotic treatment can have deleterious effects on patients and knowledge regarding the pathogenesis linked to prolonged recovery is lacking. In this prospective follow-up study, we investigated the B cell-associated and T helper (Th) cell-associated immune responses in well-characterized patients with LNB and controls. The aims were to assess the kinetics of selected cytokines and chemokines involved in the inflammatory response and to identify potential prognostic markers. We investigated 13 patients with LNB according to a standardized clinical protocol before antibiotic treatment and after 1, 6 and 12 months of follow-up. CSF and blood samples were obtained at baseline and after 1 month. As controls, we used CSF samples from 37 patients who received spinal anesthesia during orthopedic surgery. The CSF samples were analyzed for CXCL10 (Th1-related), CCL22 (Th2-related) and IL-17A, CXCL1 and CCL20 (Th17-related), as well as for the B cell-related cytokines of a proliferation-inducing ligand (APRIL), B cell-activating factor (BAFF) and CXCL13. The CSF levels of all the cytokines and chemokines, with the exception of APRIL, were significantly higher at baseline in patients with LNB compared with controls. All the cytokines and chemokines, except for IL-17A were significantly reduced at 1-month follow-up. Patients with quick recovery (< 1 month, n = 3) had significantly lower levels of CCL20 at baseline and lower levels of IL-17A at 1-month follow-up. Patients with time of recovery > 6 months (n = 7) had significantly higher levels of IL-17A at the one-month follow-up. No other cytokines or chemokines were associated with prolonged recovery. Dominating residual symptoms were fatigue, myalgia, radiculitis and/or arthralgia. In this prospective follow-up study of patients with LNB, we found significantly lower levels of CCL20 in those who recovered rapidly, and increased levels of IL-17A in patients with delayed recovery post-treatment. Our findings indicate persistent Th17-driven inflammation in the CSF, possibly contributing to a longer convalescence, and suggest IL-17A and CCL20 as potential biomarker candidates for patients with LNB.
Effect of COVID-19 pandemic on inpatient service utilization and patient outcomes in Uganda
Authors: Andia-Biraro Irene , Baluku Joseph Baruch , Olum Ronald , Bongomin Felix , Kyazze Andrew Peter , Ninsiima Sandra , Ssekamatte Phillip , Kibirige Davis , Biraro Samuel , Seremba Emmanuel , Kabugo Charles 
Published: June 2023

AbstractCOVID-19 has had devastating effects on health systems but reports from sub-Saharan Africa are few. We compared inpatient admissions, diagnostic tests performed, clinical characteristics and inpatient mortality before and during the COVID-19 pandemic at an urban tertiary facility in Uganda. We conducted a retrospective chart review of patients admitted at Kiruddu National Referral Hospital in Uganda between January–July 2019 (before the pandemic) and January–July 2020 (during the pandemic). Of 3749 inpatients, 2014 (53.7%) were female, and 1582 (42.2%) had HIV. There was a 6.1% decline in admissions from 1932 in 2019 to 1817 in 2020. There were significantly fewer diagnostic tests performed in 2020 for malaria, tuberculosis, and diabetes. Overall, 649 (17.3%) patients died. Patients admitted during the COVID-19 pandemic (adjusted odds ratio [aOR] 1.2, 95% confidence interval [CI] 1.04–1.5, p = 0.018), patients aged ≥ 60 years (aOR 1.6, 95% CI 1.2–2.1, p = 0.001), HIV co-infected (aOR 1.5, 95% CI 1.2–1.9, p < 0.001), and those admitted as referrals (aOR 1.5, 95% CI 1.2–1.9, p < 0.001) had higher odds of dying. The COVID-19 pandemic disrupted inpatient service utilization and was associated with inpatient mortality. Policy makers need to build resilience in health systems in Africa to cope with future pandemics.