bluuebunny/crossref_metadata_2025_split huggingface dataset:
Recursive computed ABC (cABC) analysis as a precise method for reducing machine learning based feature sets to their minimum informative size
Authors: Lötsch Jörn , Ultsch Alfred 
Published: April 2023

AbstractSelecting the k best features is a common task in machine learning. Typically, a few features have high importance, but many have low importance (right-skewed distribution). This report proposes a numerically precise method to address this skewed feature importance distribution in order to reduce a feature set to the informative minimum of items. Computed ABC analysis (cABC) is an item categorization method that aims to identify the most important items by partitioning a set of non-negative numerical items into subsets "A", "B", and "C" such that subset "A" contains the "few important" items based on specific properties of ABC curves defined by their relationship to Lorenz curves. In its recursive form, the cABC analysis can be applied again to subset "A". A generic image dataset and three biomedical datasets (lipidomics and two genomics datasets) with a large number of variables were used to perform the experiments. The experimental results show that the recursive cABC analysis limits the dimensions of the data projection to a minimum where the relevant information is still preserved and directs the feature selection in machine learning to the most important class-relevant information, including filtering feature sets for nonsense variables. Feature sets were reduced to 10% or less of the original variables and still provided accurate classification in data not used for feature selection. cABC analysis, in its recursive variant, provides a computationally precise means of reducing information to a minimum. The minimum is the result of a computation of the number of k most relevant items, rather than a decision to select the k best items from a list. In addition, there are precise criteria for stopping the reduction process. The reduction to the most important features can improve the human understanding of the properties of the data set. The cABC method is implemented in the Python package "cABCanalysis" available athttps://pypi.org/project/cABCanalysis/.
Discovery of novel cardiac troponin activators using fluorescence polarization-based high throughput screening assays
Authors: Parijat Priyanka , Ponnam Saraswathi , Attili Seetharamaiah , Campbell Kenneth S. , El-Mezgueldi Mohammed , Pfuhl Mark , Kampourakis Thomas 
Published: April 2023

AbstractThe large unmet demand for new heart failure therapeutics is widely acknowledged. Over the last decades the contractile myofilaments themselves have emerged as an attractive target for the development of new therapeutics for both systolic and diastolic heart failure. However, the clinical use of myofilament-directed drugs has been limited, and further progress has been hampered by incomplete understanding of myofilament function on the molecular level and screening technologies for small molecules that accurately reproduce this function in vitro. In this study we have designed, validated and characterized new high throughput screening platforms for small molecule effectors targeting the interactions between the troponin C and troponin I subunits of the cardiac troponin complex. Fluorescence polarization-based assays were used to screen commercially available compound libraries, and hits were validated using secondary screens and orthogonal assays. Hit compound-troponin interactions were characterized using isothermal titration calorimetry and NMR spectroscopy. We identified NS5806 as novel calcium sensitizer that stabilizes active troponin. In good agreement, NS5806 greatly increased the calcium sensitivity and maximal isometric force of demembranated human donor myocardium. Our results suggest that sarcomeric protein-directed screening platforms are suitable for the development of compounds that modulate cardiac myofilament function.
Grafting red clay with Bi2O3 nanoparticles into epoxy resin for gamma-ray shielding applications
Authors: Elsafi Mohamed. , Almuqrin Aljawhara H. , Almutairi Haifa M. , Al-Saleh Wafa M. , Sayyed M. I. 
Published: April 2023

AbstractWe developed new composites for photons shielding applications. The composite were prepared with epoxy resin, red clay and bismuth oxide nanoparticles (Bi2O3 NPs). In order to establish which ratio of red clay to Bi2O3 NPs provides the best shielding capabilities, several different ratios of red clay to Bi2O3 NPs were tested. The transmission factor (TF) was calculated for two different thicknesses of each sample. From the TF data, we found that epoxy resin materials have a high attenuation capacity at low energy. For ERB-10 sample (40%Epoxy + 50% Red clay + 10% Bi2O3 NPs), the TF values are 52.3% and 14.3% for thicknesses of 0.5 and 1.5 cm (at 0.06 MeV). The composite which contains the maximum amount of Bi2O3 nanoparticles (40%Epoxy + 50% Red clay + 10% Bi2O3 NPs, coded as ERB-30) has lower TF than the other composites. The TF data demonstrated that ERB-30 is capable of producing more effective attenuation from gamma rays. We also determined the linear attenuation coefficient (LAC) for the prepared composites and we found that the LAC increases for a given energy in proportion to the Bi2O3 NPs ratio. For the ERB-0 (free Bi2O3 NPs), the LAC at 0.662 MeV is 0.143 cm−1, and it increases to 0.805 cm−1 when 10% of Bi2O3 NPs is added to the epoxy resin composite. The half value layer (HVL) results showed that the thickness necessary to shield that photons to its half intensity can be significantly lowered by increasing the weight fraction of the Bi2O3 NPs in the epoxy resin composite from 0 to 30%. The HVL for ERB-20 and ERB-30 were compared with other materials such as (Epoxy as a matrix material and Al2O3, Fe2O3, MgO and ZrO2 as filler oxides in the matrix at 0.662 MeV. The HVL values for ERB-20 and ERB-30 are 4.385 and 3.988 cm and this is lower than all the selected epoxy polymers.
New U–Pb geochronology for the Central Atlantic Magmatic Province, critical reevaluation of high-precision ages and their impact on the end-Triassic extinction event
Authors: Oliveira Alisson L. , Schmitz Mark D. , Wall Corey J. , Crowley James L. , Macêdo Filho Antomat A. , Hollanda Maria Helena B. M. 
Published: April 2023

AbstractThe end-Triassic extinction (ETE) event represents one of the ‘big five’ episodes of mass extinction. The leading hypothesis for the cause of the ETE is the intrusion of voluminous magmas of the Central Atlantic Magmatic Province (CAMP) into carbon-rich sediments of two South American sedimentary basins, around 201.5 Ma. The timing of dikes and sills emplacement, however, must be considered in light of age models from CAMP rocks occurring in North America. In this work, we present new high-precision ages for critical samples in NE Brazil (201.579 ± 0.057 Ma) and Canada (201.464 ± 0.017 Ma), in order to evaluate how the South and North American magmatic events compare at the 100-ka level, and to the ETE timing. We also discuss inter-laboratory reproducibility of high-precision CAMP ages, including the 230Th disequilibrium corrections that are made to zircon U–Pb dates. Our findings in this newly discovered extension of the CAMP large igneous province in NE Brazil support the hypothesis that the CAMP may be responsible for the ETE through the triggering of greenhouse gas release from magma-evaporite interactions (contact metamorphism) in the South American basins.
The systematic comparison between Gaussian mirror and Model-X knockoff models
Authors: Chen Shuai , Li Ziqi , Liu Long , Wen Yalu 
Published: April 2023

AbstractWhile the high-dimensional biological data have provided unprecedented data resources for the identification of biomarkers, consensus is still lacking on how to best analyze them. The recently developed Gaussian mirror (GM) and Model-X (MX) knockoff-based methods have much related model assumptions, which makes them appealing for the detection of new biomarkers. However, there are no guidelines for their practical use. In this research, we systematically compared the performance of MX-based and GM methods, where the impacts of the distribution of explanatory variables, their relatedness and the signal-to-noise ratio were evaluated. MX with knockoff generated using the second-order approximates (MX-SO) has the best performance as compared to other MX-based methods. MX-SO and GM have similar levels of power and computational speed under most of the simulations, but GM is more robust in the control of false discovery rate (FDR). In particular, MX-SO can only control the FDR well when there are weak correlations among explanatory variables and the sample size is at least moderate. On the contrary, GM can have the desired FDR as long as explanatory variables are not highly correlated. We further used GM and MX-based methods to detect biomarkers that are associated with the Alzheimer’s disease-related PET-imaging trait and the Parkinson’s disease-related T-tau of cerebrospinal fluid. We found that MX-based and GM methods are both powerful for the analysis of big biological data. Although genes selected from MX-based methods are more similar as compared to those from the GM method, both MX-based and GM methods can identify the well-known disease-associated genes for each disease. While MX-based methods can have a slightly higher power than that of the GM method, it is less robust, especially for data with small sample sizes, unknown distributions, and high correlations.
Development and application of rTMS device to murine model
Authors: Choung Jin Seung , Bhattacharjee Sohom , Son Jeong Pyo , Kim Jong Moon , Cho Dong Sik , Cho Choon Sik , Kim MinYoung 
Published: April 2023

AbstractRepetitive transcranial magnetic stimulation (rTMS) is attracting attention as a new treatment technique for brain lesions, and many animal studies showing its effects have been reported. However, the findings of animal application researches cannot directly represent the effects of rTMS in human, mainly due to size difference and mechanistic characteristics of rTMS. Therefore, the authors purposed to develop a mouse rTMS to simulate clinical application and to confirm. Firstly, a virtual head model was created according to magnetic resonance images of murine head. Then, simulations of rTMS stimulation with different coils were performed on the murine head phantom, and an rTMS device for mice was fabricated based on the optimal voltage conditions. Lastly, strengths of magnetic fields generated by the two rTMS devices, for human (conventional clinical use) and mouse (newly fabricated), were measured in air and on mouse head and compared. Resultantly, the magnetic field intensity generated by coil of mouse was lower than human’s (p < 0.01), and no differences were found between the predicted simulation values and the measured intensity in vivo (p > 0.05). Further in vivo researches using miniaturized rTMS devices for murine head should be followed to be more meaningful for human.
Two-dimensional nanofluid flow impinging on a porous stretching sheet with nonlinear thermal radiation and slip effect at the boundary enclosing energy perspective
Authors: Zeeshan  , Khan Ilyas , Eldin Syed M. , Islam Saeed , Khan M. Uzair 
Published: April 2023

AbstractIn the current analysis, we examine the heat transmission analysis of nanofluid (NF) movement impinging on a porous extending sheet. The influence of nonlinear thermal radiation (TR), buoyancy force, and slip at the boundary are also examined. The leading partial differential equations (PDEs) are altered to convectional differential equation (ODEs) by suitable transformation. The ODEs are then transformed to first order by introducing the innovative variables and elucidated numerically using bvph2. The Skin Friction (SF) and Nusselt number (NN) are elaborated in detail for Al2O3, Cu, and TiO2 nanoparticles. For validation of the code, ND-solve approach is also applied. The novelty of the current effort is inspect NF flow with heat transfer over extending sheet enclosing thermal and slip effect at the boundary numerically. The thickness of boundary layer increases as the temperature and radiation factors are increased. It is perceived that the fluid velocity decays with the growing values of volume fraction parameter. When permeability and velocity slip parameters are improved the velocity outline enhances. It is investigated that the temperature inside the fluid enhances as the values of velocity slip factor, permeability factor and Biot number are augmented. For the growing values of temperature ratio, volume friction, and thermophoresis factor the temperature is enhances. It is detected that the slip factor causes the friction factor to decrease. Furthermore, the existent study is associated with the preceding.
Long-term myopia control effect and safety in children wearing DIMS spectacle lenses for 6 years
Authors: Lam Carly Siu Yin , Tang Wing Chun , Zhang Han Yu , Lee Paul H. , Tse Dennis Yan Yin , Qi Hua , Vlasak Natalia , To Chi Ho 
Published: April 2023

AbstractThis study evaluated the long-term myopia control effect and safety in children wearing Defocus Incorporated Multiple Segments (DIMS) spectacle lenses. Participants who completed the 2-year RCT were followed for a total of 6 years; their cycloplegic refractions and axial length were measured. Group 1 (n = 36) wore DIMS spectacles for 6 years; Group 2 (n = 14) wore DIMS lens for the first 3.5 years and SV spectacles afterwards; Group 3 (n = 22) wore SV spectacles in the first 2 years and switched to DIMS; Group 4 (n = 18) wore SV spectacles in the first 2 years, switched to DIMS for 1.5 years and then SV spectacles again. Group 1 showed no significant differences in myopia progression (− 0.52 ± 0.66 vs. − 0.40 ± 0.72D) and axial elongation (0.32 ± 0.26 vs. 0.28 ± 0.28 mm, bothp > 0.05) between the first and the later 3 years. In the last 2.5 years, DIMS lens groups (Groups 1 and 3) had less myopia progression and axial elongation than the single vision groups (Groups 2 and 4). There was no evidence of rebound after stopping the treatment. Post-wear visual functions in all groups were within norms. The results supported that DIMS lenses provided sustained myopia control without adverse effects over the 6-year study period.Trial registration: clinicaltrials.gov; NCT02206217.
Fossil and non-fossil sources of the carbonaceous component of PM2.5 in forest and urban areas
Authors: Cha Ji-Yeon , Lee Kyuyeon , Lee Seung-Cheol , Lee Eun-Ju , Yim Kwang-Jin , Ryoo Ilhan , Kim Minhye , Ahn Jinho , Yi Seung-Muk , Park Chan-Ryul , Oh Neung-Hwan 
Published: April 2023

AbstractAtmospheric particulate matter (PM2.5) can damage human health. Biogenic organic compounds emitted from trees may increase the concentration of PM2.5 via formation of secondary aerosols. Therefore, the role of biogenic emissions in PM2.5 formation and the sources of PM2.5 need to be investigated. Dual carbon isotope and levoglucosan analyses are powerful tools to track the sources of total carbon (TC) in PM2.5. We collected a total of 47 PM2.5 samples from 2019 to 2020 inside a pine forest and in urban areas in South Korea. The average δ13C and Δ14C of TC in PM2.5 at the Taehwa Research Forest (TRF) were − 25.7 and − 380.7‰, respectively, which were not significantly different from those collected at Seoul National University (SNU) in urban areas. Contribution of fossil fuel, C3-, and C4- plants to carbonaceous component of PM2.5 were 52, 27, and 21% at SNU, whereas those were 46, 35, and 19% at TRF, respectively. The biomass burning tracer, levoglucosan, was most abundant in winter and correlated with the contribution of C4 plants derived carbon. Results indicate that biogenic aerosols emitted from trees is less likely to be an important source of PM2.5 and that trees can act as a bio-filter to reduce PM2.5.
Reliability of a Linguistic Segmentation Procedure Specified by Systemic Functional Linguistics to Examine Extemporaneous Speech
Authors: Gravelin Anna C. , Archer Brent , Oddo Mary , Whitfield Jason A. 
Published: April 2023

Purpose:
Extemporaneous speech tasks provide an ecologically valid sample to examine speech acoustics, but differing methodologies exist in the literature for segmentation. Therefore, the purpose of this study was to examine the utility and reliability of a segmentation approach for extemporaneous speech specified by systemic functional linguistics (SFL) and its potential research and clinical applications.

Method:
Ten speakers without communication disorders served as participants in this study, and they responded to self-selected extemporaneous speaking prompts. Two expert analysts and one clinician analyst utilized a segmentation procedure specified by SFL to segment the extemporaneous speech samples into clauses and clause complexes. Intra- and interrater reliability were calculated for each analyst and pair of analysts. Acoustic measures of duration, speech rate, and intercomplex pause durations were calculated for each clause complex.

Results:

Analyses for both intra- and interrater reliability revealed high percent agreement that was significantly greater than chance for expert and clinician analysts and between each pair of analysts (
p
< .001). Acoustic analyses revealed expected variation in number and duration of spoken syllables of clause complexes between and within speakers.

Conclusions:
The segmentation approach for extemporaneous speech specified by SFL is a reliable method for trained analysts that is informed by lexico-grammar and allows for acoustic measurement of speech production. It is also a reliable method for clinician analysts for speakers without communication disorders, and future work will investigate its utility for speakers with motor speech disorders.

Supplemental Material:

https://doi.org/10.23641/asha.22357138
A Case of Primary EAC Cholesteatoma Extending into Antrum with Normal Middle Ear
Authors: Shrivastava Siddhartha , Kalra Rishita , Somyagupta Somyagupta , Pathak Vivek Kumar , Nayak Pradeepti , Shukla Stuti 
Published: April 2023

A cholesteatoma is a three-dimensional sac lined by keratinized squamous epithelium containing desquamated keratinized epithelial cell which secretes enzymes that have the tendency to expand and erode the bony structure underlying it and cause intracranial and extracranial complications. This cystic mass is in an abnormal location such as the middle ear, the petrous apex, or the external auditory canal (EAC). It is mostly found in the middle ear and rarely in the EAC. Here we have reported a rare case of unilateral primary EAC cholesteatoma with mild hearing loss in a middle-aged male.
We have reported a case of a 34-year-old male with complaints of right-sided ear discharge and right-sided decreased hearing for the last 5 to 6 years. On examination, right ear EAC was found to be dry, and a sac was observed in posterior wall extending to mastoid present with clear attic, and intact retracted tympanic membrane that was then followed by radiological evaluation to establish the diagnosis of EAC cholesteatoma. This was surgically treated and ear was cleared of all disease. Patient’s symptoms improved postoperatively.
Primary EAC cholesteatoma with disease-free middle ear is a rare finding and there is very less definitive literature available on the pathogenesis of the same.
Evaluation of Antibiotic Sensitivity in Deep Neck Space Infections
Authors: Singhal Gaurang , Nayak Pradeepti , Padiyar Vageesh , Sen Kanwar , Shrivastava Siddhartha Santosh 
Published: April 2023

Objectives
Deep neck space infections (DNIs) are a major medical concern in the Indian community. Owing to the complex anatomy of the neck spaces and their communication with each other, accurate diagnosis becomes challenging. A thorough knowledge of the anatomy as well as the microbiological profile and antibiotic sensitivity is imperative to institute the appropriate surgical and medical management to the patient. Due to the advent of broad-spectrum antibiotics, the incidence of these infections have declined considerably over the last couple of decades. However, due to the extensive and unregulated use, the incidence of antibiotic resistance has also been increasing at an alarming pace.

Material and Methods
This cross-sectional observational study was conducted in the Department of Otorhinolaryngology at a tertiary care government hospital in an urban area. All patients who presented to the OPD or emergency over a period of 18 months and who fulfilled the eligibility criteria were included in the study. Pus was collected from the abscess, aseptically by needle aspiration using wide bore (18G) needle and transported under all aseptic measures within 24 hours for culture and sensitivity, KOH mount, and detection of AFB. Antibiotic sensitivity testing was done using the Kirby Bauer disc diffusion method and E-test.

Results
Staphylococcus aureus as the most common infective organism followed by MRSA in the pediatric age group and Klebsiella pneumoniae in adults.

Conclusion
Primary knowledge of individual antibiotic sensitivity is imperative to ensure prompt and adequate treatment of the patient with higher chances of complete resolution, concomitantly minimizing the risk of resistance. Inadequate and delayed treatment may lead to swift progression of the disease with significant morbidity and mortality.
Diagnoses and Outcomes of Patients with Suspicion of Acute Coronary Syndrome and Raised High Sensitive Troponin I: A Single Center Study from Pakistan
Authors: Kanani Fatima , Maqsood Sidra , Wadhwani Vandana , Zubairy Maliha , Iftikhar Imran , Zubairi Adnan Mustafa 
Published: April 2023

Abstract
Objectives Troponins are classically raised in acute coronary syndrome (ACS) although other cardiovascular and non-cardiovascular causes are recognized. We aimed to see the association of high sensitivity (Hs) Troponin I values exceeding the sex-specific 99th percentile upper reference limit (URL) with diagnoses, emergency department (ED) outcomes, 30-day outcomes of admitted patients and predictors of ACS in both genders.
Materials and Methods A retrospective study of all patients presenting to the emergency department from January 2019 to April 2021 with suspicion of ACS and Hs-Troponin I values greater than the sex-specific 99th percentile URL.
Statistical Analysis SPSS version 24 was used, Pearson's chi-square tests, Fisher's exact test, Kruskal–Wallis test, Mann–Whitney U test, and odds ratios, including the 95% confidence intervals, for each characteristic were used for analysis. A p-value of < 0.05 was considered significant.
Results There were a total of 5,982 patients (3,031 males, 2,951 females), out of which 878 patients were admitted under the cardiology specialty. In patients who were admitted to the ward, mortality was higher in females (8.2%) with less than a 10-fold rise in Hs-Troponin I while similar in both genders (7.6%) in patients with Hs-troponin I greater than 10-fold of sex-specific 99th percentile URL. Raised low-density lipoprotein-cholesterol was a significant factor associated with 2.4 times higher odds of ACS.
Conclusion Women with Hs-Troponin values up to 10 times the URL, i.e., 15.6–160 ng/L have higher mortality than their male counterparts. LDL-cholesterol is a significant risk factor for ACS which should be controlled for its prevention.