bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ultrathin positively charged electrode skin for durable anion-intercalation battery chemistries
Authors: Sabaghi Davood , Wang Zhiyong , Bhauriyal Preeti , Lu Qiongqiong , Morag Ahiud , Mikhailovia Daria , Hashemi Payam , Li Dongqi , Neumann Christof , Liao Zhongquan , Dominic Anna Maria , Nia Ali Shaygan , Dong Renhao , Zschech Ehrenfried , Turchanin Andrey , Heine Thomas , Yu Minghao , Feng Xinliang 
Published: February 2023

AbstractThe anion-intercalation chemistries of graphite have the potential to construct batteries with promising energy and power breakthroughs. Here, we report the use of an ultrathin, positively charged two-dimensional poly(pyridinium salt) membrane (C2DP) as the graphite electrode skin to overcome the critical durability problem. Large-area C2DP enables the conformal coating on the graphite electrode, remarkably alleviating the electrolyte. Meanwhile, the dense face-on oriented single crystals with ultrathin thickness and cationic backbones allow C2DP with high anion-transport capability and selectivity. Such desirable anion-transport properties of C2DP prevent the cation/solvent co-intercalation into the graphite electrode and suppress the consequent structure collapse. An impressive PF6−-intercalation durability is demonstrated for the C2DP-covered graphite electrode, with capacity retention of 92.8% after 1000 cycles at 1 C and Coulombic efficiencies of > 99%. The feasibility of constructing artificial ion-regulating electrode skins with precisely customized two-dimensional polymers offers viable means to promote problematic battery chemistries.
Emergence of chaos in a compartmentalized catalytic reaction nanosystem
Authors: Raab Maximilian , Zeininger Johannes , Suchorski Yuri , Tokuda Keita , Rupprechter Günther 
Published: February 2023

AbstractIn compartmentalized systems, chemical reactions may proceed in differing ways even in adjacent compartments. In compartmentalized nanosystems, the reaction behaviour may deviate from that observed on the macro- or mesoscale. In situ studies of processes in such nanosystems meet severe experimental challenges, often leaving the field to theoretical simulations. Here, a rhodium nanocrystal surface consisting of different nm-sized nanofacets is used as a model of a compartmentalized reaction nanosystem. Using field emission microscopy, different reaction modes are observed, including a transition to spatio-temporal chaos. The transitions between different modes are caused by variations of the hydrogen pressure modifying the strength of diffusive coupling between individual nanofacets. Microkinetic simulations, performed for a network of 52 coupled oscillators, reveal the origins of the different reaction modes. Since diffusive coupling is characteristic for many living and non-living compartmentalized systems, the current findings may be relevant for a wide class of reaction systems.
Hybrid assembly of polymeric nanofiber network for robust and electronically conductive hydrogels
Authors: He Huimin , Li Hao , Pu Aoyang , Li Wenxiu , Ban Kiwon , Xu Lizhi 
Published: February 2023

AbstractElectroconductive hydrogels have been applied in implantable bioelectronics, tissue engineering platforms, soft actuators, and other emerging technologies. However, achieving high conductivity and mechanical robustness remains challenging. Here we report an approach to fabricating electroconductive hydrogels based on the hybrid assembly of polymeric nanofiber networks. In these hydrogels, conducting polymers self-organize into highly connected three dimensional nanostructures with an ultralow threshold (~1 wt%) for electrical percolation, assisted by templating effects from aramid nanofibers, to achieve high electronic conductivity and structural robustness without sacrificing porosity or water content. We show that a hydrogel composed of polypyrrole, aramid nanofibers and polyvinyl alcohol achieves conductivity of ~80 S cm−1, mechanical strength of ~9.4 MPa and stretchability of ~36%. We show that patterned conductive nanofiber hydrogels can be used as electrodes and interconnects with favorable electrochemical impedance and charge injection capacity for electrophysiological applications. In addition, we demonstrate that cardiomyocytes cultured on soft and conductive nanofiber hydrogel substrates exhibit spontaneous and synchronous beating, suggesting opportunities for the development of advanced implantable devices and tissue engineering technologies.
Classification of time-reversal-invariant crystals with gauge structures
Authors: Chen Z. Y. , Zhang Zheng , Yang Shengyuan A. , Zhao Y. X. 
Published: February 2023

AbstractA peculiar feature of quantum states is that they may embody so-called projective representations of symmetries rather than ordinary representations. Projective representations of space groups-the defining symmetry of crystals-remain largely unexplored. Despite recent advances in artificial crystals, whose intrinsic gauge structures necessarily require a projective description, a unified theory is yet to be established. Here, we establish such a unified theory by exhaustively classifying and representing all 458 projective symmetry algebras of time-reversal-invariant crystals from 17 wallpaper groups in two dimensions-189 of which are algebraically non-equivalent. We discover three physical signatures resulting from projective symmetry algebras, including the shift of high-symmetry momenta, an enforced nontrivial Zak phase, and a spinless eight-fold nodal point. Our work offers a theoretical foundation for the field of artificial crystals and opens the door to a wealth of topological states and phenomena beyond the existing paradigms.
Intrafusal-fiber LRP4 for muscle spindle formation and maintenance in adult and aged animals
Authors: Cao Rangjuan , Chen Peng , Wang Hongsheng , Jing Hongyang , Zhang Hongsheng , Xing Guanglin , Luo Bin , Pan Jinxiu , Yu Zheng , Xiong Wen-Cheng , Mei Lin 
Published: February 2023

AbstractProprioception is sensed by muscle spindles for precise locomotion and body posture. Unlike the neuromuscular junction (NMJ) for muscle contraction which has been well studied, mechanisms of spindle formation are not well understood. Here we show that sensory nerve terminals are disrupted by the mutation ofLrp4, a gene required for NMJ formation; inducible knockout ofLrp4in adult mice impairs sensory synapses and movement coordination, suggesting that LRP4 is required for spindle formation and maintenance. LRP4 is critical to the expression of Egr3 during development; in adult mice, it interacts in trans with APP and APLP2 on sensory terminals. Finally, spindle sensory endings and function are impaired in aged mice, deficits that could be diminished by LRP4 expression. These observations uncovered LRP4 as an unexpected regulator of muscle spindle formation and maintenance in adult and aged animals and shed light on potential pathological mechanisms of abnormal muscle proprioception.
The cytoplasmic synthesis and coupled membrane translocation of eukaryotic polyphosphate by signal-activated VTC complex
Authors: Guan Zeyuan , Chen Juan , Liu Ruiwen , Chen Yanke , Xing Qiong , Du Zhangmeng , Cheng Meng , Hu Jianjian , Zhang Wenhui , Mei Wencong , Wan Beijing , Wang Qiang , Zhang Jie , Cheng Peng , Cai Huanyu , Cao Jianbo , Zhang Delin , Yan Junjie , Yin Ping , Hothorn Michael , Liu Zhu 
Published: February 2023

AbstractInorganic polyphosphate (polyP) is an ancient energy metabolite and phosphate store that occurs ubiquitously in all organisms. The vacuolar transporter chaperone (VTC) complex integrates cytosolic polyP synthesis from ATP and polyP membrane translocation into the vacuolar lumen. In yeast and in other eukaryotes, polyP synthesis is regulated by inositol pyrophosphate (PP-InsP) nutrient messengers, directly sensed by the VTC complex. Here, we report the cryo-electron microscopy structure of signal-activated VTC complex at 3.0 Å resolution. Baker’s yeast VTC subunits Vtc1, Vtc3, and Vtc4 assemble into a 3:1:1 complex. Fifteen trans-membrane helices form a novel membrane channel enabling the transport of newly synthesized polyP into the vacuolar lumen. PP-InsP binding orients the catalytic polymerase domain at the entrance of the trans-membrane channel, both activating the enzyme and coupling polyP synthesis and membrane translocation. Together with biochemical and cellular studies, our work provides mechanistic insights into the biogenesis of an ancient energy metabolite.
Multilingual translation for zero-shot biomedical classification using BioTranslator
Authors: Xu Hanwen , Woicik Addie , Poon Hoifung , Altman Russ B. , Wang Sheng 
Published: February 2023

AbstractExisting annotation paradigms rely on controlled vocabularies, where each data instance is classified into one term from a predefined set of controlled vocabularies. This paradigm restricts the analysis to concepts that are known and well-characterized. Here, we present the novel multilingual translation method BioTranslator to address this problem. BioTranslator takes a user-written textual description of a new concept and then translates this description to a non-text biological data instance. The key idea of BioTranslator is to develop a multilingual translation framework, where multiple modalities of biological data are all translated to text. We demonstrate how BioTranslator enables the identification of novel cell types using only a textual description and how BioTranslator can be further generalized to protein function prediction and drug target identification. Our tool frees scientists from limiting their analyses within predefined controlled vocabularies, enabling them to interact with biological data using free text.
Mangrove reforestation provides greater blue carbon benefit than afforestation for mitigating global climate change
Authors: Song Shanshan , Ding Yali , Li Wei , Meng Yuchen , Zhou Jian , Gou Ruikun , Zhang Conghe , Ye Shengbin , Saintilan Neil , Krauss Ken W. , Crooks Stephen , Lv Shuguo , Lin Guanghui 
Published: February 2023

AbstractSignificant efforts have been invested to restore mangrove forests worldwide through reforestation and afforestation. However, blue carbon benefit has not been compared between these two silvicultural pathways at the global scale. Here, we integrated results from direct field measurements of over 370 restoration sites around the world to show that mangrove reforestation (reestablishing mangroves where they previously colonized) had a greater carbon storage potential per hectare than afforestation (establishing mangroves where not previously mangrove). Greater carbon accumulation was mainly attributed to favorable intertidal positioning, higher nitrogen availability, and lower salinity at most reforestation sites. Reforestation of all physically feasible areas in the deforested mangrove regions of the world could promote the uptake of 671.5–688.8 Tg CO2-eq globally over a 40-year period, 60% more than afforesting the same global area on tidal flats (more marginal sites). Along with avoiding conflicts of habitat conversion, mangrove reforestation should be given priority when designing nature-based solutions for mitigating global climate change.
Leaf transformation for efficient random integration and targeted genome modification in maize and sorghum
Authors: Wang Ning , Ryan Larisa , Sardesai Nagesh , Wu Emily , Lenderts Brian , Lowe Keith , Che Ping , Anand Ajith , Worden Andrew , van Dyk Daleen , Barone Pierluigi , Svitashev Sergei , Jones Todd , Gordon-Kamm William 
Published: February 2023

AbstractTransformation in grass species has traditionally relied on immature embryos and has therefore been limited to a few major Poaceae crops. Other transformation explants, including leaf tissue, have been explored but with low success rates, which is one of the major factors hindering the broad application of genome editing for crop improvement. Recently, leaf transformation using morphogenic genes Wuschel2 (Wus2) and Babyboom (Bbm) has been successfully used for Cas9-mediated mutagenesis, but complex genome editing applications, requiring large numbers of regenerated plants to be screened, remain elusive. Here we demonstrate that enhanced Wus2/Bbm expression substantially improves leaf transformation in maize and sorghum, allowing the recovery of plants with Cas9-mediated gene dropouts and targeted gene insertion. Moreover, using a maize-optimized Wus2/Bbm construct, embryogenic callus and regenerated plantlets were successfully produced in eight species spanning four grass subfamilies, suggesting that this may lead to a universal family-wide method for transformation and genome editing across the Poaceae.
A scrub typhus vaccine presents a challenging unmet need
Authors: Walker David H. , Mendell Nicole L. 
Published: February 2023

AbstractScrub typhus caused by the obligately intracellular bacterium, Orientia tsutsugamushi, is a major cause of life-threatening acute undifferentiated febrile illness in eastern Asia and the islands of the Western Pacific and Indian oceans. Since the estimation of an incidence of 1 million cases annually two decades ago, the number of cases has increased substantially in endemic regions, reappeared where the disease was forgotten, and spread northward. Trombiculid mites are both reservoir and vector. Despite 80 years of efforts to develop a vaccine, there is none. Protective immunity is mediated by antibodies and CD8 and CD4 T cells. Previous efforts have failed because of gaps in understanding immunity to O. tsutsugamushi, particularly the requirements for vaccine-induced immunity, lack of knowledge regarding immune memory in scrub typhus, and lack of attention to addressing the issue of cross-protection between strains. There are numerous strains of O. tsutsugamushi, and modestly durable immunity is strain-specific. Antibodies to the strain that caused infection are protective against challenges with the homologous strain but, despite reactivity with other immunodominant antigens, the immune serum does not protect against heterologous strains. Among the antigens detected by western immunoblot in immune sera (22-, 47-, 56-, 58-, and 110 kDa proteins), only the 56 kDa protein stimulates strong protection. This protein contains four hypervariable regions which are likely, on the basis of limited data, to be the targets of neutralizing antibodies. However, a method that definitively detects neutralizing antibody has yet to be developed. Only one study has used genomic data to pursue the discovery of protective antigens. Three conserved autotransporters were identified, and only immunization with ScaA provided protection against the homologous strain, but only 40% of animals were protected against challenge with a heterologous strain. A multiplex vaccine containing conformational antigens of the hypervariable regions of the 56 kDa protein of the strains of the greatest clinical and epidemiological importance, as well as conserved regions of the 56 kDa protein, ScaA, and other protective antigens identified by future genomic and bioinformatics methods should be developed and tested.
Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut
Authors: Zhang Q. , Linke V. , Overmyer K. A. , Traeger L. L. , Kasahara K. , Miller I. J. , Manson D. E. , Polaske T. J. , Kerby R. L. , Kemis J. H. , Trujillo E. A. , Reddy T. R. , Russell J. D. , Schueler K. L. , Stapleton D. S. , Rabaglia M. E. , Seldin M. , Gatti D. M. , Keele G. R. , Pham D. T. , Gerdt J. P. , Vivas E. I. , Lusis A. J. , Keller M. P. , Churchill G. A. , Blackwell H. E. , Broman K. W. , Attie A. D. , Coon J. J. , Rey F. E. 
Published: February 2023

AbstractThe molecular bases of how host genetic variation impacts the gut microbiome remain largely unknown. Here we used a genetically diverse mouse population and applied systems genetics strategies to identify interactions between host and microbe phenotypes including microbial functions, using faecal metagenomics, small intestinal transcripts and caecal lipids that influence microbe–host dynamics. Quantitative trait locus (QTL) mapping identified murine genomic regions associated with variations in bacterial taxa; bacterial functions including motility, sporulation and lipopolysaccharide production and levels of bacterial- and host-derived lipids. We found overlapping QTL for the abundance of Akkermansia muciniphila and caecal levels of ornithine lipids. Follow-up in vitro and in vivo studies revealed that A. muciniphila is a major source of these lipids in the gut, provided evidence that ornithine lipids have immunomodulatory effects and identified intestinal transcripts co-regulated with these traits including Atf3, which encodes for a transcription factor that plays vital roles in modulating metabolism and immunity. Collectively, these results suggest that ornithine lipids are potentially important for A. muciniphila–host interactions and support the role of host genetics as a determinant of responses to gut microbes.
Deterministic generation of indistinguishable photons in a cluster state
Authors: Cogan Dan , Su Zu-En , Kenneth Oded , Gershoni David 
Published: February 2023

AbstractEntanglement between particles is a basic concept of quantum sciences. The ability to produce entangled particles in a controllable manner is essential for any quantum technology. Entanglement between light particles (photons) is particularly crucial for quantum communication due to light’s non-interactive nature and long-lasting coherence. Resources producing entangled multiphoton cluster states will enable communication between remote quantum nodes, as the inbuilt redundancy of cluster photons allows for repeated local measurements—compensating for losses and probabilistic Bell measurements. For feasible applications, the cluster generation should be fast, deterministic and, most importantly, its photons indistinguishable, which will allow measurements and fusion of clusters by interfering photons. Here, using periodic excitation of a semiconductor quantum-dot-confined spin, we demonstrate a multi-indistinguishable photon cluster, featuring a continuously generated string of photons at deterministic gigahertz generation rates, and an optimized entanglement length of about ten photons. The indistinguishability of the photons opens up new possibilities for scaling up the cluster’s dimensionality by fusion, thus building graph states suited for measurement-based photonic quantum computers and all-photonic quantum repeaters.
An optimized bioluminescent substrate for non-invasive imaging in the brain
Authors: Su Yichi , Walker Joel R. , Hall Mary P. , Klein Mark A. , Wu Xiang , Encell Lance P. , Casey Kerriann M. , Liu Lan Xiang , Hong Guosong , Lin Michael Z. , Kirkland Thomas A. 
Published: February 2023

AbstractBioluminescence imaging (BLI) allows non-invasive visualization of cells and biochemical events in vivo and thus has become an indispensable technique in biomedical research. However, BLI in the central nervous system remains challenging because luciferases show relatively poor performance in the brain with existing substrates. Here, we report the discovery of a NanoLuc substrate with improved brain performance, cephalofurimazine (CFz). CFz paired with Antares luciferase produces greater than 20-fold more signal from the brain than the standard combination of d-luciferin with firefly luciferase. At standard doses, Antares–CFz matches AkaLuc–AkaLumine/TokeOni in brightness, while occasional higher dosing of CFz can be performed to obtain threefold more signal. CFz should allow the growing number of NanoLuc-based indicators to be applied to the brain with high sensitivity. Using CFz, we achieve video-rate non-invasive imaging of Antares in brains of freely moving mice and demonstrate non-invasive calcium imaging of sensory-evoked activity in genetically defined neurons.
A molecular switch modulates assembly and host factor binding of the HIV-1 capsid
Authors: Schirra Randall T. , dos Santos Nayara F. B. , Zadrozny Kaneil K. , Kucharska Iga , Ganser-Pornillos Barbie K. , Pornillos Owen 
Published: February 2023

AbstractThe HIV-1 capsid is a fullerene cone made of quasi-equivalent hexamers and pentamers of the viral CA protein. Typically, quasi-equivalent assembly of viral capsid subunits is controlled by a molecular switch. Here, we identify a Thr-Val-Gly-Gly motif that modulates CA hexamer/pentamer switching by folding into a 310 helix in the pentamer and random coil in the hexamer. Manipulating the coil/helix configuration of the motif allowed us to control pentamer and hexamer formation in a predictable manner, thus proving its function as a molecular switch. Importantly, the switch also remodels the common binding site for host factors that are critical for viral replication and the new ultra-potent HIV-1 inhibitor lenacapavir. This study reveals that a critical assembly element also modulates the post-assembly and viral replication functions of the HIV-1 capsid and provides new insights on capsid function and inhibition.
Conserved miR-370-3p/BMP-7 axis regulates the phenotypic change of human vascular smooth muscle cells
Authors: Kim Yerin , Yu Namhee , Jang Ye Eun , Lee Eunkyung , Jung Yeonjoo , Lee Doo Jae , Taylor W. Robert , Jo Hanjoong , Kim Jaesang , Lee Sanghyuk , Kang Sang Won 
Published: February 2023

AbstractEndothelial dysfunction and inflammatory immune response trigger dedifferentiation of vascular smooth muscle cells (SMCs) from contractile to synthetic phenotype and initiate arterial occlusion. However, the complex vascular remodeling process playing roles in arterial occlusion initiation is largely unknown. We performed bulk sequencing of small and messenger RNAs in a rodent arterial injury model. Bioinformatic data analyses reveal that six miRNAs are overexpressed in injured rat carotids as well as synthetic-type human vascular SMCs. In vitro cell-based assays show that four miRNAs (miR-130b-5p, miR-132-3p, miR-370-3p, and miR-410-3p) distinctly regulate the proliferation of and monocyte adhesion to the vascular SMCs. Individual inhibition of the four selected miRNAs strongly prevents the neointimal hyperplasia in the injured rat carotid arteries. Mechanistically, miR-132-3p and miR-370-3p direct the cell cycle progression, triggering SMC proliferation. Gene ontology analysis of mRNA sequencing data consistently reveal that the miRNA targets include gene clusters that direct proliferation, differentiation, and inflammation. Notably, bone morphogenic protein (BMP)-7 is a prominent target gene of miR-370-3p, and it regulates vascular SMC proliferation in cellular and animal models. Overall, this study first reports that the miR-370-3p/BMP-7 axis determines the vascular SMC phenotype in both rodent and human systems.