bluuebunny/crossref_metadata_2025_split huggingface dataset:
Comparative and phylogenetic analysis of the complete chloroplast genomes of six Polygonatum species (Asparagaceae)
Authors: Zhang Dongjuan , Ren Jing , Jiang Hui , Wanga Vincent Okelo , Dong Xiang , Hu Guangwan 
Published: May 2023

AbstractPolygonatum Miller belongs to the tribe Polygonateae of Asparagaceae. The horizontal creeping fleshy roots of several species in this genus serve as traditional Chinese medicine. Previous studies have mainly reported the size and gene contents of the plastomes, with little information on the comparative analysis of the plastid genomes of this genus. Additionally, there are still some species whose chloroplast genome information has not been reported. In this study, the complete plastomes of six Polygonatum were sequenced and assembled, among them, the chloroplast genome of P. campanulatum was reported for the first time. Comparative and phylogenetic analyses were then conducted with the published plastomes of three related species. Results indicated that the whole plastome length of the Polygonatum species ranged from 154,564 bp (P. multiflorum) to 156,028 bp (P. stenophyllum) having a quadripartite structure of LSC and SSC separated by two IR regions. A total of 113 unique genes were detected in each of the species. Comparative analysis revealed that gene content and total GC content in these species were highly identical. No significant contraction or expansion was observed in the IR boundaries among all the species except P. sibiricum1, in which the rps19 gene was pseudogenized owing to incomplete duplication. Abundant long dispersed repeats and SSRs were detected in each genome. There were five remarkably variable regions and 14 positively selected genes were identified among Polygonatum and Heteropolygonatum. Phylogenetic results based on chloroplast genome strongly supported the placement of P. campanulatum with alternate leaves in sect. Verticillata, a group characterized by whorled leaves. Moreover, P. verticillatum and P. cyrtonema were displayed as paraphyletic. This study revealed that the characters of plastomes in Polygonatum and Heteropolygonatum maintained a high degree of similarity. Five highly variable regions were found to be potential specific DNA barcodes in Polygonatum. Phylogenetic results suggested that leaf arrangement was not suitable as a basis for delimitation of subgeneric groups in Polygonatum and the definitions of P. cyrtonema and P. verticillatum require further study.
The protective effects of electroacupuncture on intestinal barrier lesions in IBS and UC model
Authors: Liu Shuqing , Huang Qin , Huang Qianhui , Wang Yuemei , Li Sihui , Wang Junmeng , Wu Qiaofeng 
Published: May 2023

AbstractIrritable bowel syndrome (IBS) and ulcerative colitis (UC) are two intestinal diseases with different pathological changes. Electroacupuncture (EA) at Zusanli (ST36) on both IBS and UC is widely used in clinic practice. But it is unclear whether acupuncture at one acupoint can treat two different intestinal diseases at different layers of intestinal barrier. To address this question, we explored three intestinal barrier lesions in IBS and UC mice with the aid of transcriptome data analysis and studied the efficacy of EA at ST36 on them. The transcriptome data analysis showed that both UC and IBS had disrupted intestinal barrier in various layers. And both UC and IBS had epithelial barrier lesions with reduction of ZO-1, Occludin and Claudin-1, while UC rather than IBS had the destruction of the mucus barrier with less MUC2 expression. As to the vascular barrier, UC showed a higher CD31 level and mesenteric blood flow reduction, while IBS showed a lower PV-1 level. EA at ST36 can significantly improve the above lesions of intestinal barrier of IBS and UC. Our results gave more details about the comprehensive protective effect of EA for UC and IBS. We guess the effect of acupuncture may be a kind of homeostasis regulation.
Antiproliferative effects of mitochondria-targeted N-acetylcysteine and analogs in cancer cells
Authors: Cheng Gang , Hardy Micael , Kalyanaraman Balaraman 
Published: May 2023

AbstractN-acetylcysteine (NAC) has been used as an antioxidant drug in tumor cells and preclinical mice tumor xenografts, and it improves adaptive immunotherapy in melanoma. NAC is not readily bioavailable and is used in high concentrations. The effects of NAC have been attributed to its antioxidant and redox signaling role in mitochondria. New thiol-containing molecules targeted to mitochondria are needed. Here, mitochondria-targeted NAC with a 10-carbon alkyl side chain attached to a triphenylphosphonium group (Mito10-NAC) that is functionally similar to NAC was synthesized and studied. Mito10-NAC has a free sulfhydryl group and is more hydrophobic than NAC. Mito10-NAC is nearly 2000-fold more effective than NAC in inhibiting several cancer cells, including pancreatic cancer cells. Methylation of NAC and Mito10-NAC also inhibited cancer cell proliferation. Mito10-NAC inhibits mitochondrial complex I-induced respiration and, in combination with monocarboxylate transporter 1 inhibitor, synergistically decreased pancreatic cancer cell proliferation. Results suggest that the antiproliferative effects of NAC and Mito10-NAC are unlikely to be related to their antioxidant mechanism (i.e., scavenging of reactive oxygen species) or to the sulfhydryl group-dependent redox modulatory effects.
Association of SULT1A2 rs1059491 with obesity and dyslipidaemia in southern Chinese adults
Authors: Lv Hai-Yan , Shi Guifeng , Li Cai , Ye Ya-Fei , Chen Ya-Hong , Chen Li-Hua , Tung Tao-Hsin , Zhang Meixian 
Published: May 2023

AbstractIn the sulfotransferase (SULT) superfamily, members of the SULT1 family mainly catalyse the sulfonation reaction of phenolic compounds, which is involved in the phase II metabolic detoxification process and plays a key role in endocrine homeostasis. A coding variant rs1059491 in the SULT1A2 gene has been reported to be associated with childhood obesity. This study aimed to investigate the association of rs1059491 with the risk of obesity and cardiometabolic abnormalities in adults. This case‒control study included 226 normal weight, 168 overweight and 72 obese adults who underwent a health examination in Taizhou, China. Genotyping of rs1059491 was performed by Sanger sequencing in exon 7 of the SULT1A2 coding region. Chi-squared tests, one-way ANOVA, and logistic regression models were applied. The minor allele frequencies of rs1059491 in the overweight combined with obesity and control groups were 0.0292 and 0.0686, respectively. No differences in weight and body mass index were detected between the TT genotype and GT + GG genotype under the dominant model, but the levels of serum triglycerides were significantly lower in G-allele carriers than in non-G-allele carriers (1.02 (0.74–1.32) vs. 1.35 (0.83–2.13) mmol/L, P = 0.011). The GT + GG genotype of rs1059491 versus the TT genotype reduced the risk of overweight and obesity by 54% (OR 0.46, 95% CI 0.22–0.96, P = 0.037) after adjusting for sex and age. Similar results were observed for hypertriglyceridaemia (OR 0.25, 95% CI 0.08–0.74, P = 0.013) and dyslipidaemia (OR 0.37, 95% CI 0.17–0.83, P = 0.015). However, these associations disappeared after correction for multiple tests. This study revealed that the coding variant rs1059491 is nominally associated with a decreased risk of obesity and dyslipidaemia in southern Chinese adults. The findings will be validated in larger studies including more detailed information on genetic background, lifestyle and weight change with age.
Foreign stingers: South American freshwater river stingrays Potamotrygon spp. established in Indonesia
Authors: Jerikho Rikho , Akmal Surya Gentha , Hasan Veryl , Yonvitner  , Novák Jindřich , Magalhães André Lincoln Barroso , Maceda-Veiga Alberto , Tlusty Michael F. , Rhyne Andrew L. , Slavík Ondřej , Patoka Jiří 
Published: May 2023

AbstractThe pet trade is known to be one of the most important pathways of aquatic non-native species introduction and Indonesia is a significant trade partner. Popular ornamental South American river stingrays (Potamotrygon spp.) were introduced to Indonesia in the 1980s and the culture was established. Here we present a detailed Indonesian market and aquaculture survey, the volume of trade between January 2020 and June 2022, and the list of customer countries with the total amount of imported stingrays. Climate similarities between the native range of P. motoro and P. jabuti and Indonesia were analysed. A significant number of areas of Indonesian islands were identified as suitable for the establishment of this species. This was confirmed by the first record of probably established populations in the Brantas River (Java). In total 13 individuals including newborns were captured. The culture of potamotrygonid stingrays is unregulated in Indonesia, and the risk of the establishment of this predator and its potential spread is alarming for wildlife. Moreover, the first case of envenomation caused by Potamotrygon spp. in the wild outside of South America was recorded. The current condition is predicted as the ‘tip of the iceberg’ and continuous monitoring and mitigation of risks are strongly recommended.
Magnetic carbon Fe3O4 nanocomposites synthesized via Magnetic Induction Heating
Authors: Cervera-Gabalda L. , Gómez-Polo C. 
Published: May 2023

AbstractMagnetic Induction Heating (MIH) of magnetite nanoparticles is employed as a novel synthesis procedure of carbon based magnetic nanocomposites. Magnetic nanoparticles (Fe3O4) and fructose (1:2 weight ratio) were mechanically mixed and submitted to a RF magnetic field (305 kHz). The heat generated by the nanoparticles leads to the decomposition of the sugar and to the formation of an amorphous carbon matrix. Two sets of nanoparticles, with mean diameter sizes of 20 and 100 nm, are comparatively analysed. Structural (X-ray diffraction, Raman spectroscopy, Transmission Electron Microscopy (TEM)), electrical and magnetic (resistivity, SQUID magnetometry) characterizations confirm the nanoparticle carbon coating through the MIH procedure. The percentage of the carbonaceous fraction is suitably increased controlling the magnetic heating capacity of the magnetic nanoparticles. The procedure enables the synthesis of multifunctional nanocomposites with optimized properties to be applied in different technological fields. Particularly, Cr (VI) removal from aqueous media is presented employing the carbon nanocomposite with 20 nm Fe3O4 nanoparticles.
Passive limb training modulates respiratory rhythmic bursts
Authors: Apicella Rosamaria , Taccola Giuliano 
Published: May 2023

AbstractExercise modifies respiratory functions mainly through the afferent feedback provided by exercising limbs and the descending input from suprapontine areas, two contributions that are still underestimated in vitro. To better characterize the role of limb afferents in modulating respiration during physical activity, we designed a novel experimental in vitro platform. The whole central nervous system was isolated from neonatal rodents and kept with hindlimbs attached to an ad-hoc robot (Bipedal Induced Kinetic Exercise, BIKE) driving passive pedaling at calibrated speeds. This setting allowed extracellular recordings of a stable spontaneous respiratory rhythm for more than 4 h, from all cervical ventral roots. BIKE reversibly reduced the duration of single respiratory bursts even at lower pedaling speeds (2 Hz), though only an intense exercise (3.5 Hz) modulated the frequency of breathing. Moreover, brief sessions (5 min) of BIKE at 3.5 Hz augmented the respiratory rate of preparations with slow bursting in control (slower breathers) but did not change the speed of faster breathers. When spontaneous breathing was accelerated by high concentrations of potassium, BIKE reduced bursting frequency. Regardless of the baseline respiratory rhythm, BIKE at 3.5 Hz always decreased duration of single bursts. Surgical ablation of suprapontine structures completely prevented modulation of breathing after intense training. Albeit the variability in baseline breathing rates, intense passive cyclic movement tuned fictive respiration toward a common frequency range and shortened all respiratory events through the involvement of suprapontine areas. These observations contribute to better define how the respiratory system integrates sensory input from moving limbs during development, opening new rehabilitation perspectives.
Precise measurement for line structure light vision sensor with large range
Authors: Sheng Wei-wei 
Published: May 2023

AbstractHigh precision and large measurement range are the target of any one three-dimensional scanner. For a line structure light vision sensor, measurement precision depends on its calibration results, i.e., determining mathematical expression of the light plane in camera coordinate system. However, as calibration results are locally optimal solutions, high precise measurement in a large range is difficult. In this paper, we give a precise measurement method and the corresponding calibration procedure for a line structure light vision sensor with a large measurement range. A motorized linear translation stages with a travel range of 150 mm and a planar target which is a surface plate with a machining precision of 0.05 mm are utilized. With the help of the linear translation stage and the planar target, functions which gives the relationship between center point of the laser stripe and the perpendicular/ horizontal distance are obtained. Once image of light stripe is captured, we can get a precise measurement result from the normalized feature points. Compared with a traditional measurement method, distortion compensation is not necessary and precision of measurement is improved significantly. Experiments show that root mean square error of measurement results according to our proposed method is reduced by 64.67% related to the traditional method.
Programmed death-ligand 1 expression and overall survival in Thai patients with gastric cancer
Authors: Chitapanarux Taned , Gumrai Pawut , Kongkarnka Sarawut , Wannasai Komson , Lertprasertsuke Nirush 
Published: May 2023

AbstractProgrammed death-ligand 1 (PD-L1) expression has now been implicated in gastric cancer (GC). This study was conducted to determine the impact of clinicopathological characteristics on PD-L1 expression and its association with survival in GC patients receiving standard-of-care. In total, 268 GC patients receiving upfront surgery were enrolled at Chiang Mai University Hospital. PD-L1 expression was assayed by immunohistochemistry staining using the Dako 22C3 pharmDx. The rates of PD-L1 positivity by combined positive score (CPS) at a cutoff value of 1 and 5 were 22% and 7%. PD-L1 positivity was significantly higher in patients younger than 55 than those older than 55 (32.6% vs. 16.5%, p = 0.003; 11.6% vs. 4.4%, p = 0.027). PD-L1 positivity was observed more frequently in GC with metastases than without (25.2% vs. 17.1%, p = 0.112; 7.2% vs. 6.7%, p = 0.673). Patients with PD-L1 positive had a significantly shorter median overall survival than those with PD-L1 negative (32.7 vs. 41.6 months, p = 0.042, 27.6 vs. 40.8 months, p = 0.038). In conclusion, PD-L1 expression has been associated with young age, short survival, and metastases, although unrelated to the tumor stage. For GC patients, PD-L1 testing is recommended, especially among young patients with metastases.
Association between ultra-processed foods intake with lipid profile: a cross-sectional study
Authors: Nouri Mehran , Eskandarzadeh Sevda , Makhtoomi Maede , Rajabzadeh-Dehkordi Milad , Omidbeigi Niloofar , Najafi Maryam , Faghih Shiva 
Published: May 2023

AbstractThe purpose of this cross-sectional study was to examine the association between ultra-processed foods (UPFs) intake and lipid profile in Iranian people. The study was performed on 236 individuals with the age range of 20–50 years in Shiraz, Iran. Food intakes of the participants were evaluated using a 168-item food frequency questionnaire (FFQ) which was previously validated in Iranian populations. In order to estimate the ultra-processed foods intake, classification of NOVA food group was used. Serum lipids including total cholesterol (TC), triglyceride (TG), high density lipoprotein cholesterol (HDL-C) and low density lipoprotein cholesterol (LDL-C) were measured. The results showed that mean of age and body mass index (BMI) of the participants were 45.98 years and 28.28 kg/m2, respectively. Logistic regression was used to evaluation the relation between UPFs intake and lipid profile. Higher UPFs intake was associated with increased OR of TG and HDL abnormality in both crude (OR 3.41; 95% CI 1.58, 7.34; P-trend = 0.001 and OR 2.99; 95% CI 1.31, 6.82; P-trend = 0.010) and adjusted models (OR 3.69; 95% CI 1.67, 8.16; P-trend = 0.001 and OR 3.38 95% CI 1.42, 8.07; P-trend = 0.009). But, there were no association between UPFs intake and other indices of lipid profile. Also, we found significant associations between UPFs intake and dietary nutrient profiles. In conclusion, UPFs consumption could worsen the nutritional profile of the diet and lead to negative changes in some indices of the lipid profile.
Voice disorder classification using convolutional neural network based on deep transfer learning
Authors: Peng Xiangyu , Xu Huoyao , Liu Jie , Wang Junlang , He Chaoming 
Published: May 2023

AbstractVoice disorders are very common in the global population. Many researchers have conducted research on the identification and classification of voice disorders based on machine learning. As a data-driven algorithm, machine learning requires a large number of samples for training. However, due to the sensitivity and particularity of medical data, it is difficult to obtain sufficient samples for model learning. To address this challenge, this paper proposes a pretrained OpenL3-SVM transfer learning framework for the automatic recognition of multi-class voice disorders. The framework combines a pre-trained convolutional neural network, OpenL3, and a support vector machine (SVM) classifier. The Mel spectrum of the given voice signal is first extracted and then input into the OpenL3 network to obtain high-level feature embedding. Considering the effects of redundant and negative high-dimensional features, model overfitting easily occurs. Therefore, linear local tangent space alignment (LLTSA) is used for feature dimension reduction. Finally, the obtained dimensionality reduction features are used to train the SVM for voice disorder classification. Fivefold cross-validation is used to verify the classification performance of the OpenL3-SVM. The experimental results show that OpenL3-SVM can effectively classify voice disorders automatically, and its performance exceeds that of the existing methods. With continuous improvements in research, it is expected to be considered as auxiliary diagnostic tool for physicians in the future.
Intensity correlation scan (IC-scan) technique to characterize the optical nonlinearities of scattering media
Authors: Crispim Mariana J. B. , Pereira Cícera C. S. , Oliveira Nathália T. C. , Chevrollier Martine , de Oliveira Rafael A. , Martins Weliton S. , Reyna Albert S. 
Published: May 2023

AbstractLight scattering, whether caused by desired or spurious elements, is considered one of the main phenomena that present great challenges for the nonlinear (NL) optical characterization of turbid media. The most relevant disturbing factor is the random deformation suffered by the spatial intensity distribution of the laser beam due to multiple scattering. In this work, we report the intensity correlation scan (IC-scan) technique as a new tool to characterize the NL optical response of scattering media, by taking advantage of light scattering to generate speckle patterns sensitive to wavefront changes induced by the self-focusing and self-defocusing effects. Peak-to-valley transmittance curves, with a higher signal-to-noise ratio, are obtained by analyzing the spatial intensity correlation functions of the different speckle patterns, even in very turbid media where conventional NL spectroscopy techniques fail. To demonstrate the potential of the IC-scan technique, the NL characterization of colloids that contain a high concentration of silica nanospheres as scatterers, as well as gold nanorods, which act as NL particles and light scatterers, was performed. The results show that the IC-scan technique is more accurate, precise and robust to measure NL refractive indices in turbid media, overcoming limitations imposed by well-established Z-scan and D4σ techniques.
Neuromorphic acoustic sensing using an adaptive microelectromechanical cochlea with integrated feedback
Authors: Lenk Claudia , Hövel Philipp , Ved Kalpan , Durstewitz Steve , Meurer Thomas , Fritsch Tobias , Männchen Andreas , Küller Jan , Beer Daniel , Ivanov Tzvetan , Ziegler Martin 
Published: May 2023

AbstractMany speech processing systems struggle in conditions with low signal-to-noise ratios and in changing acoustic environments. Adaptation at the transduction level with integrated signal processing could help to address this; in human hearing, transduction and signal processing are integrated and can be adaptively tuned for noisy conditions. Here we report a microelectromechanical cochlea as a bio-inspired acoustic sensor with integrated signal processing functionality. Real-time feedback is used to tune the sensing and processing properties, and dynamic switching between linear and nonlinear characteristics improves the detection of signals in noisy conditions, increases the sensor dynamic range and enables adaptation to changing acoustic environments. The transition to nonlinear behaviour is attributed to a Hopf bifurcation and we experimentally validate its dependence on sensor and feedback parameters. We also show that output-signal coupling between two coupled sensors can increase the frequency coverage.
Coherent structures at the origin of time irreversibility in wall turbulence
Authors: Iacobello Giovanni , Chowdhuri Subharthi , Ridolfi Luca , Rondoni Lamberto , Scarsoglio Stefania 
Published: May 2023

AbstractTime irreversibility is a distinctive feature of non-equilibrium phenomena such as turbulent flows, where irreversibility is mainly associated with an energy cascade process. The connection between time irreversibility and coherent motions in wall turbulence, however, has not been investigated yet. An Eulerian, multiscale analysis of time irreversibility in wall-bounded turbulence is proposed in this study, which differs from previous works relying on a Lagrangian approach and mainly focusing on homogeneous turbulence. Outcomes reveal a strong connection between irreversibility levels and coherent structures in both turbulent channel and boundary layer flows. In the near-wall region, irreversibility is directly related to the inner spectral peak originating from small-scale turbulent structures in the buffer layer. Conversely, stronger irreversibility is found in correspondence to the outer spectral peak originating from larger turbulent flow scales far from the wall. Our results represent a first effort to characterize Eulerian TI in wall-bounded turbulent flows, thus paving the way for further developments in wall-turbulence modeling and control accounting for broken temporal symmetry.