bluuebunny/crossref_metadata_2025_split huggingface dataset:
Unconventional exciton evolution from the pseudogap to superconducting phases in cuprates
Authors: Singh A. , Huang H. Y. , Xie J. D. , Okamoto J. , Chen C. T. , Watanabe T. , Fujimori A. , Imada M. , Huang D. J. 
Published: December 2022

AbstractElectron quasiparticles play a crucial role in simplifying the description of many-body physics in solids with surprising success. Conventional Landau’s Fermi-liquid and quasiparticle theories for high-temperature superconducting cuprates have, however, received skepticism from various angles. A path-breaking framework of electron fractionalization has been established to replace the Fermi-liquid theory for systems that show the fractional quantum Hall effect and the Mott insulating phenomena; whether it captures the essential physics of the pseudogap and superconducting phases of cuprates is still an open issue. Here, we show that excitonic excitation of optimally doped Bi2Sr2CaCu2O8+δ with energy far above the superconducting-gap energy scale, about 1 eV or even higher, is unusually enhanced by the onset of superconductivity. Our finding proves the involvement of such high-energy excitons in superconductivity. Therefore, the observed enhancement in the spectral weight of excitons imposes a crucial constraint on theories for the pseudogap and superconducting mechanisms. A simple two-component fermion model which embodies electron fractionalization in the pseudogap state provides a possible mechanism of this enhancement, pointing toward a novel route for understanding the electronic structure of superconducting cuprates.
Iron-mediated ligand-to-metal charge transfer enables 1,2-diazidation of alkenes
Authors: Zhang Muliang , Zhang Jinghui , Li Qingyao , Shi Yumeng 
Published: December 2022

AbstractGiven the widespread significance of vicinal diamine units in organic synthesis, pharmaceuticals and functional materials, as well as in privileged molecular catalysts, an efficient and practical strategy that avoids the use of stoichiometric strong oxidants is highly desirable. We herein report the application of ligand-to-metal charge transfer (LMCT) excitation to 1,2-diazidation reactions from alkenes and TMSN3 via a coordination-LMCT-homolysis process with more abundant and greener iron salt as the catalyst. Such a LMCT-homolysis mode allows the generation of electrophilic azidyl radical intermediate from Fe–N3 complexes poised for subsequent radical addition into carbon–carbon double bond. The generated carbon radical intermediate is further captured by iron-mediated azidyl radical transfer, enabling dual carbon–nitrogen bond formation. This protocol provides a versatile platform to access structurally diverse diazides with high functional group compatibility from readily available alkenes without the need of chemical oxidants.
Exon junction complex shapes the m6A epitranscriptome
Authors: Yang Xin , Triboulet Robinson , Liu Qi , Sendinc Erdem , Gregory Richard I. 
Published: December 2022

AbstractN6-methyladenosine (m6A), the most abundant modification of mRNA, is essential for normal development and dysregulation promotes cancer. m6A is highly enriched in the 3’ untranslated region (UTR) of a large subset of mRNAs to influence mRNA stability and/or translation. However, the mechanism responsible for the observed m6A distribution remains enigmatic. Here we find the exon junction complex shapes the m6A landscape by blocking METTL3-mediated m6A modification close to exon junctions within coding sequence (CDS). Depletion of EIF4A3, a core component of the EJC, causes increased METTL3 binding and m6A modification of short internal exons, and sites close to exon-exon junctions within mRNA. Reporter gene experiments further support the role of splicing and EIF4A3 deposition in controlling m6A modification via the local steric blockade of METTL3. Our results explain how characteristic patterns of m6A mRNA modification are established and uncover a role of the EJC in shaping the m6A epitranscriptome.
Exploiting ferrofluidic wetting for miniature soft machines
Authors: Sun Mengmeng , Hao Bo , Yang Shihao , Wang Xin , Majidi Carmel , Zhang Li 
Published: December 2022

AbstractMiniature magnetic soft machines could significantly impact minimally invasive robotics and biomedical applications. However, most soft machines are limited to solid magnetic materials, whereas further progress also relies on fluidic constructs obtained by reconfiguring liquid magnetic materials, such as ferrofluid. Here we show how harnessing the wettability of ferrofluids allows for controlled reconfigurability and the ability to create versatile soft machines. The ferrofluid droplet exhibits multimodal motions, and a single droplet can be controlled to split into multiple sub-droplets and then re-fuse back on demand. The soft droplet machine can negotiate changing terrains in unstructured environments. In addition, the ferrofluid droplets can be configured as a liquid capsule, enabling cargo delivery; a wireless omnidirectional liquid cilia matrix capable of pumping biofluids; and a wireless liquid skin, allowing multiple types of miniature soft machine construction. This work improves small magnetic soft machines’ achievable complexity and boosts their future biomedical applications capabilities.
Unique roles of co-receptor-bound LCK in helper and cytotoxic T cells
Authors: Horkova Veronika , Drobek Ales , Paprckova Darina , Niederlova Veronika , Prasai Avishek , Uleri Valeria , Glatzova Daniela , Kraller Markus , Cesnekova Michaela , Janusova Sarka , Salyova Eva , Tsyklauri Oksana , Kadlecek Theresa A. , Krizova Katerina , Platzer René , Schober Kilian , Busch Dirk H. , Weiss Arthur , Huppa Johannes B. , Stepanek Ondrej 
Published: December 2022

AbstractThe kinase LCK and CD4/CD8 co-receptors are crucial components of the T cell antigen receptor (TCR) signaling machinery, leading to key T cell fate decisions. Despite decades of research, the roles of CD4–LCK and CD8–LCK interactions in TCR triggering in vivo remain unknown. In this study, we created animal models expressing endogenous levels of modified LCK to resolve whether and how co-receptor-bound LCK drives TCR signaling. We demonstrated that the role of LCK depends on the co-receptor to which it is bound. The CD8-bound LCK is largely dispensable for antiviral and antitumor activity of cytotoxic T cells in mice; however, it facilitates CD8+ T cell responses to suboptimal antigens in a kinase-dependent manner. By contrast, the CD4-bound LCK is required for efficient development and function of helper T cells via a kinase-independent stabilization of surface CD4. Overall, our findings reveal the role of co-receptor-bound LCK in T cell biology, show that CD4- and CD8-bound LCK drive T cell development and effector immune responses using qualitatively different mechanisms and identify the co-receptor–LCK interactions as promising targets for immunomodulation.
Relation of gait measures with mild unilateral knee pain during walking using machine learning
Authors: Bacon Kathryn L. , Felson David T. , Jafarzadeh S. Reza , Kolachalama Vijaya B. , Hausdorff Jeffrey M. , Gazit Eran , Segal Neil A. , Lewis Cora E. , Nevitt Michael C. , Kumar Deepak ,   Multicenter Osteoarthritis Study Investigators, Felson David T. , Segal Neil A. , Lewis Cora E. , Nevitt Michael C. 
Published: December 2022

AbstractGait alterations in those with mild unilateral knee pain during walking may provide clues to modifiable alterations that affect progression of knee pain and osteoarthritis (OA). To examine this, we applied machine learning (ML) approaches to gait data from wearable sensors in a large observational knee OA cohort, the Multicenter Osteoarthritis (MOST) study. Participants completed a 20-m walk test wearing sensors on their trunk and ankles. Parameters describing spatiotemporal features of gait and symmetry, variability and complexity were extracted. We used an ensemble ML technique (“super learning”) to identify gait variables in our cross-sectional data associated with the presence/absence of unilateral knee pain. We then used logistic regression to determine the association of selected gait variables with odds of mild knee pain. Of 2066 participants (mean age 63.6 [SD: 10.4] years, 56% female), 21.3% had mild unilateral pain while walking. Gait parameters selected in the ML process as influential included step regularity, sample entropy, gait speed, and amplitude dominant frequency, among others. In adjusted cross-sectional analyses, lower levels of step regularity (i.e., greater gait variability) and lower sample entropy(i.e., lower gait complexity) were associated with increased likelihood of unilateral mild pain while walking [aOR 0.80 (0.64–1.00) and aOR 0.79 (0.66–0.95), respectively].
High moisture confluence in Japan Sea polar air mass convergence zone captured by hourly radiosonde launches from a ship
Authors: Tachibana Yoshihiro , Honda Meiji , Nishikawa Hatsumi , Kawase Hiroaki , Yamanaka Haruna , Hata Daichi , Kashino Yuji 
Published: December 2022

AbstractSome of the heaviest snowfalls in urban areas in the world occur in Japan, particularly in regions that face the Japan Sea. Many heavy snowfalls are produced by a Japan Sea polar air mass convergence zone (JPCZ), which is an atmospheric river-like cloud zone that forms when Siberian cold air flows over the warm Japan Sea. Quantifying how the air–sea interaction strengthens the JPCZ is key to snowfall prediction. However, until our observations with hourly meteorological balloon launches from a training vessel in 2022, no simultaneous air–sea observations targeting the JPCZ had been conducted. Our observations showed that wind direction shifted drastically by about 90 degrees from the surface to an altitude of about 3.5 km within a narrow horizontal range of about 15 km, indicating airflow convergence from the surroundings. Maximum temperature difference between surface air (3 °C) and water was 11 °C near the JPCZ centre with 17 m s−1 wind speed. Large amounts of heat, 718 W m−2, was thus gained from the warm sea. Water vapour was also concentrated by the horizontal convergence, which caused heavy snow, equivalent to 100 cm of snowfall in 7 h. The surrounding sea greatly affects moisture formation within the JPCZ.
Gut microbiome in PCOS associates to serum metabolomics: a cross-sectional study
Authors: Yu Zheng , Qin Erqi , Cheng Shirui , Yang Han , Liu Rui , Xu Tian , Liu Yanqin , Yuan Jing , Yu Shuguang , Yang Jie , Liang Fanrong 
Published: December 2022

AbstractThe association between gut microbiome and chronic metabolic disease including polycystic ovary syndrome (PCOS), is well documented, however, the relationship between the gut microbiota and serum metabolites remains unknown. In this study, untargeted metabolomics together with a 16S rRNA gene sequencing tool was used to detect small molecule serum metabolites and the gut microbiome. We identified 15 differential metabolites between PCOS patients and the healthy control. Lysophosphatidylcholine (LPC) (18:2, 20:3, 18:1, P-16:0, 17:0, 15:0, 18:3, 20:4), phosphatidylcholine(PC), ganglioside GA2 (d18:1/16:0) and 1-linoleoylglycerophosphocholine were increased in the PCOS group, and the concentrations of phosphoniodidous acid, bilirubin, nicotinate beta-d-ribonucleotide and citric acid were decreased in the PCOS group, suggesting a lipid metabolism and energy metabolism disorder in the PCOS patients. The diversity of gut microbiota in PCOS group was lower than that in healthy controls. Escherichia/Shigella, Alistipes and an unnamed strain 0319_6G20 belonging to Proteobacteria were important distinguishing genera (LDA > 3.5) in PCOS. Prevotella_9 was positively correlated with phosphoniodidous acid, nicotinate beta-d-ribonucleotide and citric acid concentrations, and negatively correlated with the concentration of LPC (20:3) and 1-linoleoylglycerophosphocholine; Roseburia was negatively correlated with LPC concentration (20:4), while the characteristic genus 0319_6G20 of PCOS was positively correlated with LPC concentration (20:3) (COR > 0.45). SF-36 in the PCOS group was significantly lower than that in the healthy control (HC) group, which was associated with the presence of Escherichia-Shigella and Alistipes. Our finding demonstrated the correlation between the gut microbiota and serum metabolites in PCOS, and therefore characteristic gut microbiota and metabolites may play an important role in the insulin resistance and the mood changes of PCOS patients.
Concept of terahertz waveguide plasmon amplifier based on a metal groove with active graphene
Authors: Morozov Mikhail Yu. , Popov Vyacheslav V. 
Published: December 2022

AbstractWe propose a concept of terahertz waveguide plasmon amplifier based on a metal groove with active graphene. It is shown that the power amplification factor of the longitudinal-section magnetic (LSM) waveguide plasmon (normalized to its wavelength) near the cut-off frequency of this mode can exceed the amplification factor of the transverse magnetic (TM) plasmon in a layered graphene structure by more than four orders of magnitude for the same frequency. This is caused by the increase of the LSM plasmon wavelength near the cut-off frequency, smaller energy velocity of the LSM mode, and greater energy release from graphene for the LSM plasmon due to stronger lateral confinement of the LSM waveguide plasmon as compared to the TM plasmon in a layered graphene structure. We show that the enhancement of the LSM plasmon amplification factor near the cut-off frequency is a stronger effect than that due to screening of graphene.
Coagulation potential and the integrated omics of extracellular vesicles from COVID-19 positive patient plasma
Authors: Setua Saini , Thangaraju Kiruphagaran , Dzieciatkowska Monika , Wilkerson Rebecca B. , Nemkov Travis , Lamb Derek R. , Tagaya Yutaka , Boyer Tori , Rowden Tobi , Doctor Allan , D’Alessandro Angelo , Buehler Paul W. 
Published: December 2022

AbstractExtracellular vesicles (EVs) participate in cell-to-cell communication and contribute toward homeostasis under physiological conditions. But EVs can also contribute toward a wide array of pathophysiology like cancer, sepsis, sickle cell disease, and thrombotic disorders. COVID-19 infected patients are at an increased risk of aberrant coagulation, consistent with elevated circulating levels of ultra-high molecular weight VWF multimers, D-dimer and procoagulant EVs. The role of EVs in COVID-19 related hemostasis may depend on cells of origin, vesicular cargo and size, however this is not well defined. We hypothesized that the procoagulant potential of EV isolates from COVID-19 (+) patient plasmas could be defined by thrombin generation assays. Here we isolated small EVs (SEVs) and large EVs (LEVs) from hospitalized COVID-19 (+) patient (n = 21) and healthy donor (n = 20) plasmas. EVs were characterized by flow cytometry, Transmission electron microscopy, nanoparticle tracking analysis, plasma thrombin generation and a multi-omics approach to define coagulation potential. These data were consistent with differences in EV metabolite, lipid, and protein content when compared to healthy donor plasma isolated SEVs and LEVs. Taken together, the effect of EVs on plasma procoagulant potential as defined by thrombin generation and supported by multi-omics is enhanced in COVID-19. Further, we observe that this effect is driven both by EV size and phosphatidyl serine.
Analysis of gas–solid two-phase flow and structure optimization of mobile shot blasting machine recovery device
Authors: Zhang Yinhang , Fu Xiuli , Men Xiuhua , Pan Yongzhi , Zhang Tianyi , Jiang Zhenfeng 
Published: December 2022

AbstractTo address the problem of low efficiency of recycling process waste by gas–solid two-phase flow of the shot blasting machine recycling device, a method and structure by increasing the negative pressure value and optimizing the outlet pipe position are proposed. Computational fluid dynamics (CFD), discrete element method (DEM) and discrete phase model (DPM) were used to study the waste recovery efficiency at different pressure outlet conditions and outlet pipe locations. The validity of the model was verified by velocity tests at the outlet and inlet compared with simulations. The effect of particle size and particle generation rate on solid particle recovery efficiency was further investigated by analyzing the flow field distribution of the recovery unit. The results show that the maximum velocity of the gas phase in the recovery device increases with the increase of the absolute value of the outlet pressure, when the outlet pressure is -6500 Pa, the maximum velocity is 67.59 m/s. When the absolute value of the outlet pressure is greater than 6000 Pa, a small amount of steel shot particles is discharged from the recovery bin under the action of the outlet pressure, resulting in the loss of steel shot particles. After the outlet pipe position optimization, the steel shot particle recovery efficiency increased by 10% and the waste particle recovery efficiency increased by 18.9%.
Inhibition of triple negative breast cancer-associated inflammation and progression by N- acylethanolamine acid amide hydrolase (NAAA)
Authors: Benchama Othman , Malamas Michael S. , Praveen Kulkarni , Ethier Elizabeth C. , Williams Mark K. , Makriyannis Alexandros , Avraham Hava Karsenty 
Published: December 2022

AbstractTriple-negative breast cancer (TNBC) is associated with high mortality due to the high expression of pro-inflammatory cytokines and lack of targeted therapies. N-acylethanolamine acid amidase (NAAA) is an N-terminal cysteine hydrolase that promotes inflammatory responses through the deactivation of Palmitoylethanolamide (PEA), an endogenous bioactive lipid mediator. Here, we examined NAAA expression in TNBC cells (MDA-MB-231 and MDA-MB-BrM2 cells) and the effects of NAAA inhibition on TNBC tumor growth, using a selective NAAA inhibitor AM11095 (IC50 = 20 nM). TNBC cells expressed elevated levels of full-length and splice mRNAs naaa variants. TNBC cells also express the N-acyl ethanol amides and elevated levels of the two fatty acid cores arachidonic (AA) and docosahexaenoic (DHA). PEA or AM11095 inhibited the secretion of IL-6 and IL-8, reduced the activation of the NF-kB pathway, decreased the expression of VEGF and Placental growth factor (PLGF) in TNBCs, and inhibited tumor cell migration in vitro. Using cellular magnetic resonance imaging (MRI), body images of mice administered with human MDA-MB-BrM2 cells treated with AM11095 showed a significant decrease in tumor numbers with a lower volume of tumors and increased mice survival. Mice untreated or treated with vehicle control showed a high number of tumors with high volumes in multiple organs. Thus, NAAA inhibition may constitute a potential therapeutic approach in the management of TNBC-associated inflammation and tumor growth.
Effect of grain dissolution on sloping ground
Authors: Cha Minsu , Santamarina J. Carlos 
Published: December 2022

AbstractThe static and dynamic stability of natural or constructed slopes can be affected by dissolution or dissolution-like phenomena. Their underlying mechanisms, however, remain unclear. New experimental results and discrete element simulations provide particle-level and macroscale information on the consequences of mineral dissolution on slope behavior. At the microscale, load-carrying grain arches develop around dissolving particles, the porosity increases, and contact force chains evolve to form a honeycomb topology. At the macroscale, while vertical settlements are the prevailing deformation pattern, lateral granular movements that create mass wasting are prominent in sloping ground, even under the quasi-static granular loss. Horizontal grain displacement is maximum at the surface and decreases linearly with the distance from the slope surface to become zero at the bottom boundaries, much like vertical granular displacement along the depth. Sediments with smaller friction angles and steeper slopes experience greater displacement, both vertically and horizontally. Slopes become flatter after dissolution, with the reduction in slope angle directly related to the loss in ground elevation, ΔH/Ho. Yet, because of the porous fabric that results from dissolution, vertical shortening is less than the upper bound, estimated from the loss in the solid mass fraction, ΔH/Ho≈SF. Under water-saturated conditions, the post-dissolution fabric may lead to sudden undrained shear and slope slide.
A regulatory hydrogenase gene cluster observed in the thioautotrophic symbiont of Bathymodiolus mussel in the East Pacific Rise
Authors: Patra Ajit Kumar , Perez Maëva , Jang Sook-Jin , Won Yong-Jin 
Published: December 2022

AbstractThe mytilid mussel Bathymodiolus thermophilus lives in the deep-sea hydrothermal vent regions due to its relationship with chemosynthetic symbiotic bacteria. It is well established that symbionts reside in the gill bacteriocytes of the mussel and can utilize hydrogen sulfide, methane, and hydrogen from the surrounding environment. However, it is observed that some mussel symbionts either possess or lack genes for hydrogen metabolism within the single-ribotype population and host mussel species level. Here, we found a hydrogenase cluster consisting of additional H2-sensing hydrogenase subunits in a complete genome of B. thermophilus symbiont sampled from an individual mussel from the East Pacific Rise (EPR9N). Also, we found methylated regions sparsely distributed throughout the EPR9N genome, mainly in the transposase regions and densely present in the rRNA gene regions. CRISPR diversity analysis confirmed that this genome originated from a single symbiont strain. Furthermore, from the comparative analysis, we observed variation in genome size, gene content, and genome re-arrangements across individual hosts suggesting multiple symbiont strains can associate with B. thermophilus. The ability to acquire locally adaptive various symbiotic strains may serve as an effective mechanism for successfully colonizing different chemosynthetic environments across the global oceans by host mussels.
HslO ameliorates arrested ΔrecA polA cell growth and reduces DNA damage and oxidative stress responses
Authors: Kaidow A. , Ishii N. , Suzuki S. , Shiina T. , Endoh K. , Murakami Y. , Kasahara H. 
Published: December 2022

AbstractChromosome damage combined with defective recombinase activity has been widely considered to render cells inviable, owing to deficient double-strand break repair. However, temperature-sensitive recAts polA cells grow well upon induction of DNA damage and supplementation with catalase at restrictive temperatures. These treatments reduce intracellular reactive oxygen species (ROS) levels, which suggests that recAts polA cells are susceptible to ROS, but not chronic chromosome damage. Therefore, we investigated whether polA cells can tolerate a complete lack of recombinase function. We introduced a ΔrecA allele in polA cells in the presence or absence of the hslO-encoding redox molecular chaperon Hsp33 expression plasmid. Induction of the hslO gene with IPTG resulted in increased cell viability in ΔrecA polA cells with the hslO expression plasmid. ΔrecA polA cells in the absence of the hslO expression plasmid showed rich medium sensitivity with increasing ROS levels. Adding catalase to the culture medium considerably rescued growth arrest and decreased ROS. These results suggest that hslO expression manages oxidative stress to an acceptable level in cells with oxidative damage and rescues cell growth. Overall, ROS may regulate several processes, from damage response to cell division, via ROS-sensitive cell metabolism.