bluuebunny/crossref_metadata_2025_split huggingface dataset:
RELIEF: A structured multivariate approach for removal of latent
inter-scanner effects
Authors: Zhang Rongqian , Oliver Lindsay D. , Voineskos Aristotle N. , Park Jun Young 
Published: August 2023

Abstract
Combining data collected from multiple study sites is becoming common and is advantageous to researchers to increase the generalizability and replicability of scientific discoveries. However, at the same time, unwanted inter-scanner biases are commonly observed across neuroimaging data collected from multiple study sites or scanners, rendering difficulties in integrating such data to obtain reliable findings. While several methods for handling such unwanted variations have been proposed, most of them use univariate approaches that could be too simple to capture all sources of scanner-specific variations. To address these challenges, we propose a novel multivariate harmonization method called RELIEF (REmoval of Latent Inter-scanner Effects through Factorization) for estimating and removing both explicit and latent scanner effects. Our method is the first approach to introduce the simultaneous dimension reduction and factorization of interlinked matrices to a data harmonization context, which provides a new direction in methodological research for correcting inter-scanner biases. Analyzing diffusion tensor imaging (DTI) data from the Social Processes Initiative in Neurobiology of the Schizophrenia (SPINS) study and conducting extensive simulation studies, we show that RELIEF outperforms existing harmonization methods in mitigating inter-scanner biases and retaining biological associations of interest to increase statistical power. RELIEF is publicly available as an R package.
In the Crucible of Ottoman Taḥqīq: A Fifteenth-Century Case of Verifying Philosophy and Theology under Sufi Agnosticism
Authors: Balıkçıoğlu Efe Murat 
Published: August 2023

Abstract
Verification (taḥqīq) was a post-classical practice in Islamicate scholarship that sought ways to attain syntheses between rational and religious sciences. This article argues, however, that the early Ottoman practice of taḥqīq was not limited to the “verification of theology and philosophy,” as it also included attempts to reconcile certain Sufi doctrines with philosophical theology. This tendency is evident in the works of fifteenth-century scholars, such as Sinān Paşa and his shaykh Vefā’, as well as al-Jāmī and İbn Kemāl, all of whom tried to reconcile conflicting aspects of philosophy and theology under the overarching rubric of the Akbarī worldview. These cases demonstrate that Sufi taḥqīq was already present very early in the development of Ottoman intellectual life, and that it was a diffuse and multi-variegated practice that drew upon the universalizing tendencies of Sufi agnosticism.
Looking Through Taḥqīq Glasses: Early Modern Imagination and the Unveiling of Nature in Mīrzā Bīdil’s The Sinai of Knowledge
Authors: Pellò Stefano 
Published: August 2023

Abstract
In this article I trace the contours of the notion of taḥqīq in the Ṭūr-i maʿrifat “The Sinai of Knowledge,” a late seventeenth-century poetic exploration of natural phenomena by the most important Indo-Persian poet-philosopher of the Mughal times, Mīrzā ʿAbd al-Qādir Bīdil (ʿAẓīmābād, 1644 – Delhi, 1720). I collect and analyze all the textual loci where the term taḥqīq occurs in Bīdil’s mathnawī, showing how “verification/realization” is a key concept to make sense of Bīdil’s method of observation, via imagination, of the phenomenic unfolding of physis. I also explore several surprising points of contact between Bīdil’s poetic conceptualization of nature and some aspects of Renaissance and post-Renaissance Italian naturalistic thought.
Hollywood’s Racial Order and the Re-throning of White Supremacist Identity
Authors: Labidi Imed Ben 
Published: August 2023

Abstract
Released during a period of heightened racial tension over the impact of racism in the United States and Europe, the 2021 films Stillwater and Dune Part One reveal the pervasiveness of Arab Muslim misrepresentations in Hollywood and the subtilty of white supremacist ideology as it re-emerges in new cinematic productions. With many symbolic and pronounced references to the delusions of the “great replacement” theory, the foundational blueprint of white supremacist identity in both stories, this article contends that these films recentre whiteness to either villainise Arab Muslims or totally erase them. Stillwater disguises the stereotypes on which Arab racialisation is predicated by embedding them in the details of a subplot. Dune, by contrast, is set in an imaginary Arab space with no Arabs, and yet portrayals of Arabs and Islam are front, and centre and it imagines a world with fierce but “generic” coloured people serving their great white leaders.
Iron increases the profibrotic properties of the senescent peritoneal mesothelial cells
Authors: Breborowicz Andrzej 
Published: August 2023

Background: Treatment of anemia in peritoneal dialysis patients often requires intravenous iron supplementation. Iron diffuses into the peritoneal cavity and is injurious to the peritoneum. We studied how intermittent exposure to iron changes the properties of the senescent peritoneal mesothelial cells (MC). Methods: Replicative senescence was induced in MC in control medium (Con) or in control medium with intermittent exposure to iron isomaltoside 15 µg/dL (Con-IIS). After 10 passages properties of MC from both groups were compared to MC not exposed to replicative senescence. Results: In senescent MC population doubling time was elongated, intracellular generation of free radicals and staining for β-galactosidase was stronger than in MC not exposed to replicative senescence. All these effects were stronger in MC intermittently exposed to IIS. In these cells intracellular iron content was also higher. Also expression of genes p21 and p53 was stronger in MC intermittently treated with IIS. In senescent cells higher release and expression of IL6 and TGFβ1 was observed and that effect was stronger in MC treated with iron. Senescent MC had reduced fibrinolytic activity, what may predispose to the peritoneal fibrosis. Synthesis of collagen was higher in senescent cells, more in MC treated with iron. Conclusion: MC aging results in change of their genotype and phenotype which lead to their profibrotic effect. Exposure to iron enhances these changes.
2,5-Tetrahydrofurandimethanol as a sustainable comonomer for modification of polyethylene terephthalate: Liter-level pilot test and non-isothermal crystallization kinetics
Authors: Liu Yang , Zheng Bing , Chen Zhiwei , Pu Xinmin , Zhang Shunhua 
Published: August 2023

2,5-tetrahydrofurandimethanol (THFDM), which is an alicyclic diol in products of 5-hydroxymethylfurfural (HMF), is a sustainable monomer to protect environment for replacing the role of isophthalic acid (IPA) and 1,4-cyclohexanedimethanol (CHDM) which were optimized polyethylene terephthalate (PET) performance. By direct esterification method, poly (ethylene-co-tetrahydrofurandimethanol terephthalate) (PETT) was synthesized in 2.5 L reactor. The results showed that the contents of THFDM in copolyester were less than that feeding ratio attributed to its lower reaction reactivity. The color of PETT slightly turned yellow. PETT performed broader processing temperature window, while Tg maintained in good range because of the cyclic structure of THFDM. Especially, the cold crystallization occured in PETT but not in PET after finishing melt crystallization. Otherwise, the thermal stability and crystal structure of PETT remained the same as PET. The crystallization activity of PETT became significantly lower than PET. What proved THFDM was effective in reducing PET crystallinity was that crystallization kinetics using Jeziorny theory and the trend of activation energy of melt crystallization which was calculated by Friedman method. And PETT-2 fibre had comparable mechanical property to PET fibre. In the advancement of green chemistry, THFDM has added a choice of cyclic bio-based comonomers.
Neurologic Examination Facilitated by Reversal of Rocuronium with Sugammadex
Authors: Falksen Jessica A. , Schomer Kendra J. 
Published: August 2023

Background: Patients with neurologic injuries often receive neuromuscular blocking agents to facilitate airway management. The urgent nature of intubation may result in paralytic administration prior to neurologic examination, delaying clinical assessment, prognostication, and surgical interventions. Objective: In October 2018, an institutional guideline was implemented to extend institutional sugammadex use to include patients with uncertain neurologic examinations with recent rocuronium administration. The guideline allowed for a dose range of 2 mg/kg to 16 mg/kg. The objective of this continuous quality improvement project was to describe the use of sugammadex after implementation of an institutional guideline. Methods: Patient records between October 2018 and March 2020 were reviewed for guideline adherence and outcomes. Information assessed included patient weight, injury mechanism, the dosage and timing of rocuronium and sugammadex administration, and neurologic examination findings. Descriptive statistics were used to assess outcomes. Results: During the study period, eleven patients received sugammadex to facilitate neurologic examinations. The most common dose of sugammadex was 4 mg/kg with a mean total dose of 498.4 ± 333.5 mg. The mean time between rocuronium and sugammadex administration was 73.9 ± 41 minutes. Most patients (72.7%) had definitive changes in neurologic examination after sugammadex administration. Five patients had neurosurgical interventions offered and performed, with 1 of the patients surviving. Conclusions: This case series suggests that sugammadex is useful for reversing rocuronium induced paralysis to facilitate neurologic examination needed to determine management strategies for patients with a neurologic injury.
Comparison of the effects of one-level and bi-level pre-incisional erector spinae plane block on postoperative acute pain in video-assisted thoracoscopic surgery; a prospective, randomized, double-blind trial
Authors: Zengin Emine Nilgün , Zengin Musa , Yiğit Hülya , Sazak Hilal , Şekerci Sumru , Alagöz Ali 
Published: August 2023

Abstract
Background
This prospective, randomized, double-blind trial aimed to compare the postoperative analgesic efficacy of One-Level pre-incisional erector spinae plane block (ESPB) and Bi-Level pre-incisional ESPB in patients undergoing video-assisted thoracic surgery (VATS).

Methods
This pilot trial was conducted between April 2022 and February 2023 with sixty patients. The patients were randomly divided into two groups. In One-Level ESPB Group (n = 30) block was performed at the thoracal(T)5 level with the 30 ml 0.25% bupivacaine. In the Bi-Level ESPB Group (n = 30) block was performed at T4 and T6 levels by using 15 ml of 0.25% bupivacaine for each level. In the postoperative period, 50 mg dexketoprofen every 12 h and 1 g paracetamol every 8 h were given intravenously (IV). Patient-controlled analgesia (PCA) prepared with morphine was applied to the patients. 0.5 mg/kg of tramadol was administered via IV for rescue analgesia. Visual analog scale (VAS) scores were recorded in the postoperative 1st, 2nd, 4th, 12th, 24th, and 48th -hours. The need for additional analgesics and side effects were recorded. In two groups, patients’ demographics and postoperative hemodynamic data were recorded.

Results
VAS scores at resting were statistically significantly higher at the 1st (p: 0.002) and 4th -hour (p: 0.001) in the One-Level ESPB. When the groups were evaluated in terms of VAS coughing scores, the 4th -hour (p: 0.001) VAS coughing scores results were found to be statistically significantly higher in the One-Level ESPB group. In terms of VAS values evaluated during follow-up, the rates of VAS coughing score > 3 values were found to be statistically significantly lower in the Bi-Level ESPB group (p: 0.011). There was no statistically significant difference between the groups in terms of side effects, morphine consumption, and additional analgesic use (p > 0.05).

Conclusions
Adequate analgesia was achieved in the early postoperative period in the group treated with Bi-Level ESPB with similar morphine consumption and side effects. This may be an advantage, especially in the early postoperative period when the pain is quite intense.
Lifeday coverage of oral anticoagulants and one-year relative survival in patients with atrial fibrillation: a population-based study in Estonia
Authors: Pauklin Priit , Marandi Toomas , Kals Mart , Ainla Tiia , Martinson Katrin , Eha Jaan , Kampus Priit 
Published: August 2023

Abstract
Background
Routine oral anticoagulation (OAC) is recommended for almost all high-risk patients with atrial fibrillation, yet registries show that OACs are still underused. Our aim was to study the lifeday coverage (LDC) of OAC prescriptions and its relationship with one-year mortality rates of AF patients aged ≥ 65 in Estonia for the years 2019 and 2020.

Methods
Medical data for AF patients aged ≥ 65 years from 2018 and alive as of 01.01.2019 (cohort I) and new AF documentation from 2019 and alive as of 01.01.2020 (cohort II) was obtained from the Health Insurance Fund’s electronic database. The data was linked to the nationwide Estonian Medical Prescription Centre’s database of prescribed OACs. For LDC analysis, daily doses of guideline-recommended OACs were used. The patients were categorized into three LDC groups: 0%, 1–79%, and ≥ 80%. The data was linked to the Estonian Causes of Death Registry to establish the date of death and mortality rate for the whole Estonian population aged ≥ 65.

Results
There were 34,018 patients in cohort I and 9,175 patients with new AF documentation (cohort II), previously not included in cohort I. Of the patients, 77.7% and 68.6% had at least one prescription of OAC in cohorts I and II respectively. 57.4% in cohort I and 44.5% in cohort II had an LDC of ≥ 80%. The relative survival estimates at 1 year for LDC lifeday coverage groups 0%, 1–79%, and ≥ 80% were 91.2%, 98.2%, and 98.5% (cohort I), and 91.9%, 95.2%, and 97.6% (cohort II), respectively.

Conclusions
Despite clear indications for OAC use, LDC is still insufficient and anticoagulation is underused for stroke prevention in Estonia. Further education of the medical community and patients is needed to achieve higher lifeday coverage of prescribed OACs.
Genetically predicted effects of physical activity and sedentary behavior on myasthenia gravis: evidence from mendelian randomization study
Authors: Li Jiao , Wang Fei , Zhang Chen , Li Zhen , Gao Juan , Liu Haijie 
Published: August 2023

Abstract
Background
Myasthenia gravis (MG) is an autoimmune disorder affecting the neuromuscular junction. Despite the potential benefits of higher physical activity and lower sedentary behavior in MG patients, evidence from observational studies for the effect of physical activity on the risk of MG is limited and inconclusive.

Methods
We employed linkage disequilibrium score (LDSC) regression, two-sample Mendelian randomization (MR), and its multivariable extension analyses (MVMR) to assess the relationship between leisure screen time (LST), moderate-to-vigorous intensity physical activity during leisure time (MVPA) and the risk of MG using genome-wide association studies (GWAS) summary datasets. MR analyses were performed using the inverse-variance-weighted (IVW), weighted-median, and MR-Egger regression. Sensitivity analyses were further performed using alternative instruments to test the robustness of our findings.

Results
We found evidence of genetic overlap between LST (rg = 0.113, P = 0.023) and MG, as well as between MVPA (rg=-0.220, P = 0.0001) and MG, using LDSC method. The results of the MR suggested an association between genetic liability to LST and increased risk of MG (IVW OR = 1.609, 95% CI = 1.153 to 2.244; P = 0.005). This association was particularly notable for late-onset MG (IVW OR = 1.698, 95% CI = 1.145 to 2.518; P = 0.008), but not for early-onset MG. Consistent findings were obtained in the MVMR analysis using BMI as covariate (IVW OR = 1.593, 95% CI 1.167 to 2.173, P = 0.003). However, the MR analysis does not support a substantial causal effect of MVPA on the risk of MG.

Conclusion
Our findings support a causal effect of sedentary behavior as measured by LST on MG, indicating that lack of exercise may play a role in the development of MG. Longitudinal and interventional studies of this association are warranted.
The “island sign” on diffusion-weighted imaging predicts early neurological deterioration in penetrating artery territory infarctions: a retrospective study
Authors: Yang Yang , Si Zhihua , Wang Dawei , Dong Dong , Liu Rutao , Yu Xianwen , Tang Jiyou , Wang Aihua 
Published: August 2023

Abstract
Background
Early neurological deterioration (END) sometimes occurs in patients with penetrating artery territory infarction (PATI) and leads to poor prognosis. In this study, we analyzed clinical and neuroimaging characteristics of PATI, and focused on the infarct patterns on diffusion-weighted imaging (DWI). We tried to investigate whether the “island sign” pattern is associated with END.

Methods
We enrolled consecutive patients admitted with acute PATI within 48 h after onset from May 2020 to July 2022. They were divided into with and without the “island sign” pattern on DWI. According to infarct location, all the patients were classified into two groups: the territories of the lenticulostriate arteries (LSA) and paramedian pontine arteries (PPA). The patients in each group were further divided into two groups according to whether they developed END or not. Through analyzing the clinical and neuroimaging characteristics of the patients, we tried to identify the factors that might associated with the “island sign” pattern and the potential predictors of END within the LSA and PPA groups.

Results
Out of the 113 patients enrolled in this study, END was found in 17 patients (27.9%) in the LSA group and 20 patients (38.5%) in the PPA group. The “island sign” was found in 26 (23%) patients. In the multivariate analysis, the independent predictors of END in the LSA group were the “island sign” (OR 4.88 95% CI 1.03–23.2 P = 0.045) and high initial National Institute of Health Stroke Scale (NIHSS) (OR 1.79 95% CI 1.08–2.98 P = 0.024) and in the PPA group was the presence of lesions extending to the ventral pontine surface (OR 7.53 95% CI 1.75–32.37 P = 0.007).

Conclusions
The predictive factors for END were different in the LSA and PPA groups. The “island sign” was particularly associated with END in the LSA group.
Acceptability of prehabilitation for cancer surgery: a multi-perspective qualitative investigation of patient and ‘clinician’ experiences
Authors: Powell Rachael , Davies Amy , Rowlinson-Groves Kirsty , French David P , Moore John , Merchant Zoe 
Published: August 2023

Abstract
Background
‘Prehabilitation’ interventions aim to enhance individuals’ physical fitness prior to cancer treatment, typically involve exercise training as a key component, and may continue to support physical activity, strength, and fitness during or after treatment. However, uptake of prehabilitation is variable. This study investigated how patients from diverse socio-economic status groups perceived an exemplar prehabilitation and recovery programme, aiming to understand factors impacting acceptability, engagement and referral.

Methods
This research was conducted in the context of the Prehab4Cancer and Recovery Programme, a prehabilitation and recovery programme available across Greater Manchester, UK. Qualitative, semi-structured phone/video-call interviews were conducted with 18 adult patient participants referred to the programme (16 ‘engagers’, 2 ‘non-engagers’; half the sample lived in localities with low socio-economic status scores). An online questionnaire with free-response and categorical-response questions was completed by 24 ‘clinician’ participants involved in referral (nurses, doctors and other staff roles). An inductive, multi-perspective, thematic analysis was performed, structured using the Framework approach.

Results
Discussing and referring patients to prehabilitation can be challenging due to large quantities of information for staff to cover, and for patients to absorb, around the time of diagnosis. The programme was highly valued by both participant groups; the belief that participation would improve recovery seemed a major motivator for engagement, and some ‘clinicians’ felt that prehabilitation should be treated as a routine part of treatment, or extended to support other patient groups. Engagers seemed to appreciate a supportive approach where they did not feel forced to do any activity and tailoring of the programme to meet individual needs and abilities was appreciated. Initial engagement could be daunting, but gaining experience with the programme seemed to increase confidence.

Conclusions
The prehabilitation programme was highly valued by engagers. Introducing prehabilitation at a challenging time means that personalised approaches might be needed to support engagement, or participation could be encouraged at a later time. Strategies to support individuals lacking in confidence, such as buddying, may be valuable.

Study registration
The study protocol was uploaded onto the Open Science Framework 24 September 2020 (https://osf.io/347qj/).
A real-world disproportionality analysis of Rucaparib: Post-marketing Pharmacovigilance Data
Authors: Zhang Qilin , Ding Yiling , Shu Yamin , Chen Jing 
Published: August 2023

Abstract
Background
Rucaparib has been approved for the maintenance treatment of adult patients with recurrent epithelial ovarian, fallopian tube, or primary peritoneal cancer. However, the long-term safety of rucaparib in large sample population was unknown. The presented study aimed to evaluate rucaparib-associated adverse events (AEs) according to the real-world pharmacovigilance database.

Methods
Disproportionality analysis was conducted to assess the association between rucaparib and its AEs. Data were collected from the international pharmacovigilance database of US FDA Adverse Event Reporting System (FAERS) between January 2017 and June 2022. The characteristics of rucaparib-related AEs, and the onset time were further analyzed.

Results
A total of 9,296,694 AE reports were recorded in the FAERS during the study period, among which 7,087 reports were associated with rucaparib. About 135 rucaparib-related AE signals in 15 system organ class (SOCs) were identified. The most common AEs included anaemia, thrombocytopenia, nausea, vomiting, fatigue, blood creatinine increase, alanine aminotransferase increase, and aspartate aminotransferase increase, which were listed in the label for rucaparib. Of note, 21 new and unexpected significant AEs that off-label were also found in our study, such as preferred term (PTs) of intestinal obstruction, gastrooesophageal reflux disease, blood iron decreased, dehydration, and hypersomnia. The median onset time of rucaparib-related AEs was 12 days (interquartile range [IQR] 1–62 days), and had early failure types.

Conclusion
Our study demonstrated potential new AEs of rucaparib, and further studies were expected to confirm the results.