bluuebunny/crossref_metadata_2025_split huggingface dataset:
Thermal, chemical and physical analysis of VDW.1Seal, Fill Root ST, and ADseal root canal sealers
Authors: Saber Shehabeldin , Galal Manar M. , Ismail Amira Galal , Hamdy Tamer M. 
Published: September 2023

AbstractThis study aimed to evaluate the thermal, chemical, and physical properties of VDW.1Seal, Fill Root ST, and ADseal sealers. Thermal properties were analyzed using Thermogravimetric analysis (TGA) and Differential thermal analysis (DTA). Attenuated total reflection Fourier Transform Infrared Spectroscopy (ATR-FTIR) analysis was performed as a complementary test to confirm TGA/DTA analysis. The chemical composition of the set sealer material was identified using an X-ray powder diffraction (XRD) system. Other physical properties of each sealer were investigated; ten specimens were used to measure the solubility (at 24 h and 28 days), and another ten specimens were used to assess pH changes and calcium ion release (after 7 and 14 days). Film thickness was done according to ISO 6876 specs. The data were analyzed using the two-way ANOVA test. Results showed that for all sealers, TGA analysis revealed a direct relationship between sealer mass loss and temperature rise. In addition, the decomposition of the tested sealers started at 145 °C, 135 °C and 91 °C for VDW.1Seal, ADseal sealer, and Fill Root ST, respectively. XRD analysis revealed a higher degree of crystallinity for VDW.1Seal and ADseal. ADseal showed the least solubility; VDW.1Seal exhibited the highest alkalinity, calcium ion release, and the lowest film thickness.
DNA barcoding of marine teleost fishes (Teleostei) in Cebu, the Philippines, a biodiversity hotspot of the coral triangle
Authors: Huang Wen-Chien , Evacitas Florence Chan , Balisco Rodulf Anthony , Nañola Cleto L. , Chou Tak-Kei , Jhuang Wei-Cheng , Chang Chih-Wei , Shen Kang-Ning , Shao Kwang-Tsao , Liao Te-Yu 
Published: September 2023

AbstractA morphology-based barcoding library of market teleost fishes (Teleostei) in Cebu is built based on cytochrome c oxidase subunit I (COI) sequences and voucher specimens which aimed to establish a reliable reference of frequently traded fishes in the province, a biodiversity hotspot at the center of the Philippine archipelago. A total of 1721 specimens were collected from 18 fish markets and landing sites around the province, in which 538 specimens were sequenced belonging to 393 species from 229 genera, 86 families, and 37 orders. Most speciose families are coral reef or reef-related shallow-water species. Twelve species from 11 families are newly recorded in the Philippine waters, among which 7 species are deep-sea inhabitants, while 3 species have expanded their distribution range. Only 20 taxa could not be identified to the species level due to the difficulty in morphological examinations, absence of matched reference sequences in online databases, and/or problematic species awaiting further studies. This first comprehensive DNA barcoding survey of Cebu fishes can facilitate further taxonomic research as well as the conservation and management of fisheries in the Philippines.
Genomic-driven nutritional interventions for radiotherapy-resistant rectal cancer patient
Authors: Southern Joshua , Gonzalez Guadalupe , Borgas Pia , Poynter Liam , Laponogov Ivan , Zhong Yoyo , Mirnezami Reza , Veselkov Dennis , Bronstein Michael , Veselkov Kirill 
Published: September 2023

AbstractRadiotherapy response of rectal cancer patients is dependent on a myriad of molecular mechanisms including response to stress, cell death, and cell metabolism. Modulation of lipid metabolism emerges as a unique strategy to improve radiotherapy outcomes due to its accessibility by bioactive molecules within foods. Even though a few radioresponse modulators have been identified using experimental techniques, trying to experimentally identify all potential modulators is intractable. Here we introduce a machine learning (ML) approach to interrogate the space of bioactive molecules within food for potential modulators of radiotherapy response and provide phytochemically-enriched recipes that encapsulate the benefits of discovered radiotherapy modulators. Potential radioresponse modulators were identified using a genomic-driven network ML approach, metric learning and domain knowledge. Then, recipes from the Recipe1M database were optimized to provide ingredient substitutions maximizing the number of predicted modulators whilst preserving the recipe’s culinary attributes. This work provides a pipeline for the design of genomic-driven nutritional interventions to improve outcomes of rectal cancer patients undergoing radiotherapy.
Trapped tidal currents generate freely propagating internal waves at the Arctic continental slope
Authors: Baumann Till M. , Fer Ilker 
Published: September 2023

AbstractEnergetic tidal currents in the Arctic play an important role in local mixing processes, but they are primarily confined to the shelves and continental slopes due to topographic trapping north of their critical latitude. Recent studies employing idealized models have suggested that the emergence of higher harmonic tidal waves along these slopes could serve as a conduit for tidal energy transmission into the Arctic Basin. Here we provide observational support from an analysis of yearlong observations from three densely-instrumented oceanographic moorings spanning 30 km across the continental slope north of Svalbard ($$\sim$$
∼
81.3$$^{\circ }$$

∘

N). Full-depth current records show strong barotropic diurnal tidal currents, dominated by the K$$_1$$

1

constituent. These sub-inertial currents vary sub-seasonally and are strongest at the 700-m isobath due to the topographic trapping. Coinciding with the diurnal tide peak in summer 2019, we observe strong baroclinic semidiurnal currents exceeding 10 cm s$$^{-1}$$

-
1

between 500 m and 1000 m depth about 10 km further offshore at the outer mooring. In this semidiurnal band, we identify super-inertial K$$_2$$

2

waves, and present evidence that their frequency, timing, polarization, propagation direction and depths are consistent with the generation as higher harmonics of the topographically trapped K$$_1$$

1

tide at the continental slope.
Non-thermal atmospheric pressure plasma treatment increases hydrophilicity and promotes cell growth on titanium alloys in vitro
Authors: Jo Woo-Lam , Lim Young-Wook , Kwon Soon-Yong , Bahk Ji-Hoon , Kim Jungsung , Shin Taejin , Kim YongHwa 
Published: September 2023

AbstractMost medical implants are made of titanium. When titanium is exposed to air for a long time, hydrocarbons are deposited and the surface becomes hydrophobic. Cell attachment is important for bone ingrowth to occur on the implant surface, and hydrophilicity can enhance this. We examined whether non-thermal atmospheric pressure plasma treatment could increase the hydrophilicity of the titanium surface. Samples coated with four widely used coating types [grit blasting, micro arc oxidation (MAO), titanium plasma spray (TPS), and direct metal fabrication (DMF)] were treated with plasma. Each of the four surface-treated samples was divided into groups with and without plasma treatment. We analysed wettability by surface analysis and evaluation of contact angles, cell proliferation, and adhesion using scanning electron microscopy (SEM), confocal laser scanning microscopy, absorbance tests, and alkaline phosphatase (ALP) activity assay; four different Ti6Al4V surface types were compared. After plasma treatment, the contact angle was reduced on all surfaces, and the carbon content was reduced on all surfaces based on X-ray photoelectron spectroscopy (XPS) surface analysis. Under confocal laser scanning, the cell layer was thicker on the plasma-treated samples, especially in groups TPS and DMF. Cell proliferation was 41.8%, 17.7%, 54.9%, and 83.8% greater for the plasma- than non-plasma-treated grit blasting, MAO, TPS, and DMF samples, respectively. Hydrophilicity increased significantly under plasma treatment, and biological responsivity was also improved.
Valproate regulates inositol synthesis by reducing expression of myo-inositol-3-phosphate synthase
Authors: Case Kendall C. , Beltman Rachel J. , Pflum Mary Kay H. , Greenberg Miriam L. 
Published: September 2023

AbstractInositol depletion is a hypothesized mechanism of action of mood stabilization drugs used in the treatment of bipolar disorder. It was previously reported that the mood stabilizer valproate (VPA) increased phosphorylation of myo-inositol-3-phosphate synthases (MIPS), the rate limiting enzyme of inositol synthesis. Phosphosites were identified and examination of site-directed mutants suggested that phosphorylation leads to decreased enzymatic activity. In this study, we examined the extent of MIPS phosphorylation in response to VPA and used two interaction screens to identify protein kinases that interact with MIPS. Using an epitope tagged MIPS construct, we determined the fraction of phosphorylated MIPS to be very low (less than 2% of total), and we could not detect phosphorylation of untagged MIPS in response to VPA. In vitro analyses of phosphorylation revealed that putative protein kinases, PKC and CKII, have low specificity toward MIPS. These findings suggest that VPA likely depletes inositol via a mechanism other than MIPS phosphorylation. Consistent with this, mRNA levels of the MIPS-encoding gene INO1 and MIPS protein levels were significantly reduced during the mid-log growth phase in response to VPA treatment. These findings suggest that the mechanism whereby VPA causes inositol depletion is by reducing expression of the rate-limiting enzyme MIPS.
The interaction between cortisol and testosterone predicts leadership within rock hyrax social groups
Authors: Goll Yael , Bordes Camille , Weissman Yishai A. , Shnitzer Inbar , Beukeboom Rosanne , Ilany Amiyaal , Koren Lee , Geffen Eli 
Published: September 2023

AbstractGroup movement leadership is associated with higher risks for those in the front. Leaders are the first to explore new areas and may be exposed to predation. Individual differences in risk-taking behavior may be related to hormonal differences. In challenging circumstances, such as risk-taking leadership that may pose a cost to the leader, cortisol is secreted both to increase the likelihood of survival by restoring homeostasis, and to mediate cooperative behavior. Testosterone too has a well-established role in risk-taking behavior, and the dual-hormone hypothesis posits that the interaction of testosterone and cortisol can predict social behavior. Based on the dual-hormone hypothesis, we investigated here whether the interaction between testosterone and cortisol can predict risk-taking leadership behavior in wild rock hyraxes (Procavia capensis). We used proximity loggers, observations, and playback trials to characterize hyrax leaders in three different leadership contexts that varied in their risk levels. In support of the dual-hormone hypothesis, we found that cortisol and testosterone interactions predict leadership that involves risk. Across different circumstances that involved low or high levels of risk, testosterone was positively related to leadership, but only in individuals (both males and females) with low levels of cortisol. We also found an interaction between these hormone levels and age at the low-risk scenarios. We suggest that the close social interactions and affiliative behavior among hyrax females within small egalitarian groups may make female leadership less risky, and therefore less stressful, and allow female leaders to influence group activities.
Rice straw-derived smoke water promotes rice root growth under phosphorus deficiency by modulating oxidative stress and photosynthetic gene expression
Authors: Pinit Sompop , Ariyakulkiat Lalichat , Chaiwanon Juthamas 
Published: September 2023

AbstractPlant-derived smoke has been shown to promote plant growth and seed germination, but its roles and mechanisms in response to nutrient deficiency stress remain unclear. Plants respond to phosphorus (P) deficiency by undergoing morphological, physiological, and transcriptional changes in order to improve nutrient uptake efficiency. Here, we showed that rice straw-derived smoke water could promote root growth in rice (Oryza sativa cv. Nipponbare) grown under P-sufficient and P-deficient conditions. Transcriptome analysis of the root tissues identified 1309 genes up-regulated and 1311 genes down-regulated by smoke water under P-deficient conditions. The GO terms ‘glutathione transferase activity’ and ‘photosynthesis—light reaction’ were found to be significantly enriched among the genes that were up- and down-regulated by smoke water, respectively. Biochemical analysis showed that smoke water reduced P-deficient-induced accumulation of H2O2 and malondialdehyde (MDA), a lipid peroxidation marker, reduced sucrose contents, but increased Fe accumulation. Furthermore, smoke water suppressed the expression of strigolactone biosynthesis genes, which were strongly induced by P deficiency as an adaptive strategy to improve root P uptake. These results revealed a potential mechanism by which smoke water promotes root growth and interacts with P deficiency-induced transcriptional regulation to mitigate P deficiency stress in rice.
Near-infrared optical nanothermometry via upconversion of Ho3+-sensitized nanoparticles
Authors: Ryszczyńska Sylwia , Martín Inocencio R. , Grzyb Tomasz 
Published: September 2023

AbstractRecently, materials revealing the upconversion (UC) phenomenon, which is a conversion of low-energy photons to higher-energy ones, have attracted considerable attention in luminescence thermometry due to the possibility of precise and remote optical thermal sensing. The most widely studied type of luminescent thermometry uses a ratiometric approach based on changes in the UC luminescence intensity, mainly of lanthanide ions’ thermally coupled energy levels. In this work, NaYF4:Ho3+@NaYF4, and NaYF4:Ho3+, Er3+@NaYF4 nanoparticles (NPs) were synthesized by the controlled reaction in oleic acid and octadecene at 573 K. The obtained nanoparticles had hexagonal structures, oval shapes, and average sizes of 22.5 ± 2.2 nm and 22.2 ± 2.0 nm, respectively. The spectroscopic properties of the products were investigated by measurements of the UC emission under 1151 nm laser excitation in the temperature range between 295 to 378 K. The sample doped with Ho3+ and Er3+ ions showed unique behavior of enhancing emission intensity with the temperature. The relative sensitivity determined for the NPs containing Ho3+ and Er3+ ions, reached the maximum value of 1.80%/K at 378 K. Here, we prove that the NaYF4:Ho3+, Er3+@NaYF4 system presents unique and excellent optical temperature sensing properties based on the luminescence intensity ratios of the near-infrared bands of both Ho3+ and Er3+ ions.
Performance evaluation of the AiDx multi-diagnostic automated microscope for the detection of schistosomiasis in Abuja, Nigeria
Authors: Makau-Barasa Louise , Assefa Liya , Aderogba Moses , Bell David , Solomon Jacob , Urude Rita Omohode , Nebe Obiageli J. , A-Enegela Juliana , Damen James G. , Popoola Samuel , Diehl Jan-Carel , Vdovine Gleb , Agbana Temitope 
Published: September 2023

AbstractIn this research, we report on the performance of automated optical digital detection and quantification of Schistosoma haematobium provided by AiDx NTDx multi-diagnostic Assist microscope. Our study was community-based, and a convenient sampling method was used in 17 communities in Abuja Nigeria, based on the disease prevalence information extracted from the baseline database on schistosomiasis, NTD Division, of the Federal Ministry of Health. At baseline, samples from 869 participants were evaluated of which 358 (34.1%) tested S. haematobium positive by the reference diagnostic standard. Registered images from the fully automated (autofocusing, scanning, image registration and processing, AI image analysis and automatic parasite count) AiDx assist microscope were analyzed. The Semi automated (autofocusing, scanning, image registration & processing and manual parasite count) and the fully automated AiDx Assist showed comparable sensitivities and specificities of [90.3%, 98%] and [89%, 99%] respectively. Overall, estimated egg counts of the semi-automated & fully automated AiDx Assist correlated significantly with the egg counts of conventional microscopy (r = 0.93, p ≤ 0.001 and r = 0.89, p ≤ 0.001 respectively). The AiDx Assist device performance is consistent with requirement of the World Health Organization diagnostic target product profile for monitoring, evaluation, and surveillance of Schistosomiasis elimination Programs.
Discrete Element Analysis of Shape Effect on the Shear Behaviors of Ballast
Authors: Hou Wenjie , Li Ang , Song Weimin 
Published: September 2023

AbstractRailway ballast layer is an indispensable component of railway transport. Ballast morphology plays an important effect in ballast-sleeper interaction and the durability of ballast layer. In this study, four types of ballast with different morphological parameters were generated and discrete element method was adopted to investigate the direct shear behaviors. The initial packing states were studied by analyzing the porosities and the normal contact force distributions. The shear results were verified by the reported testing results. On the other hand, one-way ANOVA tests were performed to explore the impact of ballast shape on the initial packing behaviors and the direct shear performance. Results indicated that for all four parameters, aspect ratio (AR), sphericity (Φ), roundness (RD) and convexity (CON), the initial porosities decreased first and increased subsequently along with the increase of the parameters. The four parameters could significantly affect the internal friction inside the assemblies. For each parameter, the larger the parameter, the insignificant the internal friction effect. One-way ANOVA tests revealed that all the four parameters were significant in affecting the initial porosities and the internal friction. Moreover, during the direct shear process, the larger the AR or Φ, the smaller the coordination number, which was mainly ascribed to the ballast shapes.
Differential intracellular management of fatty acids impacts on metabolic stress-stimulated glucose uptake in cardiomyocytes
Authors: Vanni Ettore , Lindner Karina , Gavin Anne-Claude , Montessuit Christophe 
Published: September 2023

AbstractStimulation of glucose uptake in response to ischemic metabolic stress is important for cardiomyocyte function and survival. Chronic exposure of cardiomyocytes to fatty acids (FA) impairs the stimulation of glucose uptake, whereas induction of lipid droplets (LD) is associated with preserved glucose uptake. However, the mechanisms by which LD induction prevents glucose uptake impairment remain elusive. We induced LD with either tetradecanoyl phorbol acetate (TPA) or 5-aminoimidazole-4-carboxamide-1-β-D-ribofuranoside (AICAR). Triacylglycerol biosynthesis enzymes were inhibited in cardiomyocytes exposed to FA ± LD inducers, either upstream (glycerol-3-phosphate acyltransferases; GPAT) or downstream (diacylglycerol acyltransferases; DGAT) of the diacylglycerol step. Although both inhibitions reduced LD formation in cardiomyocytes treated with FA and LD inducers, only DGAT inhibition impaired metabolic stress-stimulated glucose uptake. DGAT inhibition in FA plus TPA-treated cardiomyocytes reduced triacylglycerol but not diacylglycerol content, thus increasing the diacylglycerol/triacylglycerol ratio. In cardiomyocytes exposed to FA alone, GPAT inhibition reduced diacylglycerol but not triacylglycerol, thus decreasing the diacylglycerol/triacylglycerol ratio, prevented PKCδ activation and improved metabolic stress-stimulated glucose uptake. Changes in AMP-activated Protein Kinase activity failed to explain variations in metabolic stress-stimulated glucose uptake. Thus, LD formation regulates metabolic stress-stimulated glucose uptake in a manner best reflected by the diacylglycerol/triacylglycerol ratio.
Ignition temperature and explosion pressure of suspended coal dust cloud under different conditions and suppression characteristics
Authors: Liu Tianqi , Mu Xiangzhen , Wu Xingchen , Jia Ruiheng , Xie Jining , Gao Zhongyi 
Published: September 2023

AbstractThe ignition and explosion processes of suspended coal dust clouds and their suppression characteristics are important aspects of dust prevention and control. To understand the ignition temperature and explosion pressure of coal dust clouds, as well as the inhibitory effect of explosion suppressants, experimental tests are conducted. The study found that during the ignition process of coal dust clouds, the optimal dust spray pressure is 20 kPa, because coal dust clouds are more likely to ignite under this condition. When the mass concentration of coal dust cloud is 500 g m−3, the maximum pressure and maximum pressure rise rate are both the highest. When Al(OH)3 is mixed with coal dust and the mass percentage is 60%, the coal dust cloud can still be ignited. When KH2PO4 is mixed with coal dust, the upper limit of the test temperature is reached when the percentage of mixture is 55%. When NH4H2PO4 is mixed with coal dust and the mass percentage is greater than 40%, the coal dust cloud can’t be ignited anymore. The suppression effect of mixing Al(OH)3 and NH4H2PO4 is not as good as that of mixing KH2PO4 and NH4H2PO4.
Neck and capsid architecture of the robust Agrobacterium phage Milano
Authors: Sonani Ravi R. , Esteves Nathaniel C. , Horton Abigail A. , Kelly Rebecca J. , Sebastian Amanda L. , Wang Fengbin , Kreutzberger Mark A. B. , Leiman Petr G. , Scharf Birgit E. , Egelman Edward H. 
Published: September 2023

AbstractLarge gaps exist in our understanding of how bacteriophages, the most abundant biological entities on Earth, assemble and function. The structure of the “neck” region, where the DNA-filled capsid is connected to the host-recognizing tail remains poorly understood. We describe cryo-EM structures of the neck, the neck-capsid and neck-tail junctions, and capsid of the Agrobacterium phage Milano. The Milano neck 1 protein connects the 12-fold symmetrical neck to a 5-fold vertex of the icosahedral capsid. Comparison of Milano neck 1 homologs leads to four proposed classes, likely evolved from the simplest one in siphophages to more complex ones in myo- and podophages. Milano neck is surrounded by the atypical collar, which covalently crosslinks the tail sheath to neck 1. The Milano capsid is decorated with three types of proteins, a minor capsid protein (mCP) and two linking proteins crosslinking the mCP to the major capsid protein. The extensive network of disulfide bonds within and between neck, collar, capsid and tail provides an exceptional structural stability to Milano.
Emergence of competing electronic states from non-integer nuclear charges
Authors: Furness James W. , Zhang Ruiqi , Kidd Jamin , Sun Jianwei 
Published: September 2023

AbstractUnderstanding many-electron phenomena with competing near-degenerate electronic states is of fundamental importance to chemistry and condensed matter physics. One of the most significant challenges for exploring such many-electron phenomena is the necessity for large system sizes in order to realize competing states, far beyond those practical for first-principles methods. Here, we show how allowing non-integer nuclear charges expands the space of computationally tractable electron systems that host competing electronic states. The emergence of competing electronic states from non-integer nuclear charges is exemplified in the simple 2-electron H2 molecule and used to examine the microscopic structure of doped quasi-1D cuprate chains, showing how non-integer nuclear charges can open a window for first-principles calculations of difficult many-electron phenomena.