bluuebunny/crossref_metadata_2025_split huggingface dataset:
Dauciform roots affect functional traits of Carex filispica under nitrogen and phosphorus fertilization in alpine meadow
Authors: Fan Rong , Hua Jinguo , Jiang Songlin , Wang Xiaoqi , Liu Wanting , Ji Wenli 
Published: August 2023

AbstractOver recent decades, there has been a severe nitrogen-deposition in alpine meadows which often leads to phosphorus limitation of plant productivity. In these high-altitude localities, Cyperaceae have an increasing biomass while other functional groups decrease. Meanwhile, Cyperaceae are known to have the ability of producing dauciform roots, which are formed under phosphorus limitation, but in China, are only described in these high-altitude places. So, is the superiority of Cyperaceae and the formation of dauciform roots in high-altitude localities related to the accumulation of nitrogen? And is there a link between them? A Carex filispica dominated community in Baima Snow Mountain was selected and quantitative fertilization with four levels of nitrogen and three levels of phosphorus was performed. After 2 weeks, Carex filispica individuals with and without dauciform roots were separated and analyzed for their regular root properties, dauciform root properties, biomass and chemical traits of above- and belowground parts. The total cover of the community declined under phosphorus limitation with increasing nitrogen supply, while the relative cover difference of Carex filispica increased with increasing nitrogen supply and decreased with increasing phosphorus supply. Dauciform roots had a more significant response to nitrogen supply than to phosphorus supply and they were formed the most at a low supply of nitrogen. The biomass and root properties of individuals with dauciform roots were enhanced by nitrogen supply and inhibited by phosphorus supply, while those of individuals without dauciform roots were often enhanced by phosphorus supply. Individuals with and without dauciform roots showed two different mechanisms, and were limited by significantly different factors, which can explain the opposite performance of Cyperaceae after nitrogen and phosphorus supply in previous studies.
Birth size and the serum level of biological age markers in men
Authors: Żelaźniewicz Agnieszka , Nowak-Kornicka Judyta , Pawłowski Bogusław 
Published: August 2023

AbstractPrevious studies showed that intrauterine growth restrictions, resulting in smaller body size at birth, are associated with altered development and the risk of age-related diseases in adult life. Thus, prenatal development may predict aging trajectories in humans. The study aimed to verify if body size at birth is related to biological age in adult men. The study sample consisted of 159 healthy, non-smoking men with a mean age of 35.24 (SD 3.44) years. Birth weight and length were taken from medical records. The ponderal index at birth was calculated. Biological age was evaluated based on serum levels of s-Klotho, hsCRP, DHEA/S, and oxidative stress markers. Pregnancy age at birth, lifestyle, weight, cortisol, and testosterone levels were controlled. The results showed no relationship between birth size and s-Klotho, DHEA/S level, inflammation, or oxidative stress. Also, men born as small-for-gestational-age (N = 49) and men born as appropriate-for-gestational-age (N = 110) did not differ in terms of biological age markers levels. The results were similar when controlled for pregnancy week at birth, chronological age, BMI, testosterone, or cortisol level. The results suggest that there is no relationship between intrauterine growth and biomarkers of aging in men aged 30–45 years from the affluent population.
Pre-exposure prophylaxis service among men who have sex with men in Malaysia: findings from a discrete choice experiment
Authors: Dubov Alex , Altice Frederick L. , Gutierrez José I. , Wickersham Jeffrey A. , Azwa Iskandar , Kamarulzaman Adeeba , Gautam Kamal , Shrestha Roman 
Published: August 2023

AbstractMen who have sex with men (MSM) in Malaysia are disproportionately affected by HIV. As pre-exposure prophylaxis (PrEP) is being introduced, we assessed population-based PrEP delivery preferences among MSM in Malaysia. We conducted a discrete choice experiment through an online survey among 718 MSM. The survey included 14 choice tasks presenting experimentally varied combinations of five attributes related to PrEP delivery (i.e., cost, dosing strategy, clinician interaction strategy, dispensing venue, and burden of visits to start PrEP). We used latent class analysis and Hierarchical Bayesian modeling to generate the relative importance of each attribute and preference across six possible PrEP delivery programs. PrEP dosing, followed by cost, was the most important attribute. The participants were clustered into five preference groups. Two groups (n = 290) most commonly preferred on-demand, while the other three preferred injectable PrEP. One group (n = 188) almost exclusively considered cost in their decision-making, and the smallest group (n = 86) was substantially less interested in PrEP for reasons unrelated to access. In simulated scenarios, PrEP initiation rates varied by the type of program available to 55·0% of MSM. Successful PrEP uptake among Malaysian MSM requires expanding beyond daily oral PrEP to on-demand and long-acting injectable PrEP, especially at affordable cost.
Influence of different skew angles of the submerged vane on pressure flushing performance
Authors: Beiramipour Sepideh , Kantoush Sameh A. , Haghjouei Hadi , Qaderi Kourosh , Rahimpour Majid 
Published: August 2023

AbstractSiltation significantly threatens a reservoir’s original storage capacity and lifespan. Pressure flushing is an effective measure against siltation through the partial drawdown of the reservoir water level with limited flushed cone volumes in front of the bottom outlet. In this study, a novel configuration with submerged vanes has been proposed and tested experimentally to increase the flushed sediment volume during pressure flushing. In the new configuration, submerged vanes aligned with ten skew angles (θ) of 10°, 20°, 30°, 45°, 70°, 110°, 135°, 150°, 160°, and 170° to the flow direction in noncohesive sediment bed materials were used. The results showed that increasing the skew angle at 45° ≤ θ ≤ 160° increased the flushing cone geometry. The minimum and maximum flushing cone dimensions and volume occurred at skew angles of θ = 45° and 135° ≤ θ ≤ 160° around the bottom outlet. The sediment flushing volume in the presence of submerged vanes at 135° ≤ θ ≤ 160° increased 25 times compared to tests without submerged vanes. Eventually, nonlinear regression analysis yielded an equation for estimating flushing cone volumes. The developed equation was tested in real case studies of a target reservoir, and an acceptable correlation between the calculated and experimental results was obtained.
A Huffman code LSB based image steganography technique using multi-level encryption and achromatic component of an image
Authors: Rahman Shahid , Uddin Jamal , Hussain Hameed , Ahmed Aftab , Khan Ayaz Ali , Zakarya Muhammad , Rahman Afzal , Haleem Muhammad 
Published: August 2023

AbstractIn the recent couple of years, due to the accelerated popularity of the internet, various organizations such as government offices, military, private companies, etc. use different transferring methods for exchanging their information. The Internet has various benefits and some demerits, but the primary bad mark is security of information transmission over an unreliable network, and widely uses of images. So, Steganography is the state of the art of implanting a message in the cover objects, that nobody can suspect or identify it. Therefore, in the field of cover steganography, it is very critical to track down a mechanism for concealing data by utilizing different blends of compression strategies. Amplifying the payload limit, and robustness, and working on the visual quality are the vital factors of this research to make a reliable mechanism. Different cover steganography research strategies have been recommended, and each adores its benefits and impediments but there is a need to foster some better cover steganography implements to accomplish dependability between the essential model of cover steganography. To handle these issues, in this paper we proposed a method in view of Huffman code, Least Significant Bits (LSB) based cover steganography utilizing Multi-Level Encryption (MLE) and colorless part (HC-LSBIS-MLE-AC) of the picture. It also used different substitution and flicking concepts, MLE, Magic matrix, and achromatic concepts for proving the proficiency, and significance of the method. The algorithm was also statistically investigated based on some Statistical Assessment Metrics (SAM) such as Mean Square Error (MSE), Peak Signal Noise Ratio (PSNR), Normalized Cross Correlation (NCC), Structural Similarity Index Metric (SSIM), etc. and different perspectives. The observational outcomes show the likelihood of the proposed algorithm and the capacity to give unwavering quality between security, payload, perception, computation, and temper protection.
Fibroglandular tissue segmentation in breast MRI using vision transformers: a multi-institutional evaluation
Authors: Müller-Franzes Gustav , Müller-Franzes Fritz , Huck Luisa , Raaff Vanessa , Kemmer Eva , Khader Firas , Arasteh Soroosh Tayebi , Lemainque Teresa , Kather Jakob Nikolas , Nebelung Sven , Kuhl Christiane , Truhn Daniel 
Published: August 2023

AbstractAccurate and automatic segmentation of fibroglandular tissue in breast MRI screening is essential for the quantification of breast density and background parenchymal enhancement. In this retrospective study, we developed and evaluated a transformer-based neural network for breast segmentation (TraBS) in multi-institutional MRI data, and compared its performance to the well established convolutional neural network nnUNet. TraBS and nnUNet were trained and tested on 200 internal and 40 external breast MRI examinations using manual segmentations generated by experienced human readers. Segmentation performance was assessed in terms of the Dice score and the average symmetric surface distance. The Dice score for nnUNet was lower than for TraBS on the internal testset (0.909 ± 0.069 versus 0.916 ± 0.067, P < 0.001) and on the external testset (0.824 ± 0.144 versus 0.864 ± 0.081, P = 0.004). Moreover, the average symmetric surface distance was higher (= worse) for nnUNet than for TraBS on the internal (0.657 ± 2.856 versus 0.548 ± 2.195, P = 0.001) and on the external testset (0.727 ± 0.620 versus 0.584 ± 0.413, P = 0.03). Our study demonstrates that transformer-based networks improve the quality of fibroglandular tissue segmentation in breast MRI compared to convolutional-based models like nnUNet. These findings might help to enhance the accuracy of breast density and parenchymal enhancement quantification in breast MRI screening.
Higher levels of Pseudomonas aeruginosa LasB elastase expression are associated with early-stage infection in cystic fibrosis patients
Authors: Llanos Agustina , Achard Pauline , Bousquet Justine , Lozano Clarisse , Zalacain Magdalena , Sable Carole , Revillet Hélène , Murris Marlène , Mittaine Marie , Lemonnier Marc , Everett Martin 
Published: August 2023

AbstractPseudomonas aeruginosa is a common pathogen in cystic fibrosis (CF) patients and a major contributor to progressive lung damage. P. aeruginosa elastase (LasB), a key virulence factor, has been identified as a potential target for anti-virulence therapy. Here, we sought to differentiate the P. aeruginosa isolates from early versus established stages of infection in CF patients and to determine if LasB was associated with either stage. The lasB gene was amplified from 255 P. aeruginosa clinical isolates from 70 CF patients from the Toulouse region (France). Nine LasB variants were identified and 69% of the isolates produced detectable levels of LasB activity. Hierarchical clustering using experimental and clinical data distinguished two classes of isolates, designated as ‘Early’ and ‘Established’ infection. Multivariate analysis revealed that the isolates from the Early infection class show higher LasB activity, fast growth, tobramycin susceptibility, non-mucoid, pigmented colonies and wild-type lasR genotype. These traits were associated with younger patients with polymicrobial infections and high pFEV1. Our findings show a correlation between elevated LasB activity in P. aeruginosa isolates and early-stage infection in CF patients. Hence, it is this patient group, prior to the onset of chronic disease, that may benefit most from novel therapies targeting LasB.
Phosphorus deficiency induces sexual reproduction in the dinoflagellate Prorocentrum cordatum
Authors: Kalinina Vera , Berdieva Mariia , Aksenov Nikolay , Skarlato Sergei 
Published: August 2023

AbstractNitrogen (N) and phosphorus (P) are essential elements whose availability promotes successful growth of phytoplankton and governs aquatic primary productivity. In this study, we investigated the effect of N and/or P deficiency on the sexual reproduction of Prorocentrum cordatum, the dinoflagellate with the haplontic life cycle which causes harmful algal blooms worldwide. In P. cordatum cultures, N and the combined N and P deficiency led to the arrest of the cell cycle in the G0/G1 phases and attenuation of cell culture growth. We observed, that P, but not N deficiency triggered the transition in the life cycle of P. cordatum from vegetative to the sexual stage. This resulted in a sharp increase in percentage of cells with relative nuclear DNA content 2C (zygotes) and the appearance of cells with relative nuclear DNA content 4C (dividing zygotes). Subsequent supplementation with phosphate stimulated meiosis and led to a noticeable increase in the 4C cell number (dividing zygotes). Additionally, we performed transcriptomic data analysis and identified putative phosphate transporters and enzymes involved in the phosphate uptake and regulation of its metabolism by P. cordatum. These include high- and low-affinity inorganic phosphate transporters, atypical alkaline phosphatase, purple acid phosphatases and SPX domain-containing proteins.
Abnormal sense of agency in eating disorders
Authors: Colle Livia , Hilviu Dize , Boggio Monica , Toso Alessandra , Longo Paola , Abbate-Daga Giovanni , Garbarini Francesca , Fossataro Carlotta 
Published: August 2023

AbstractThe feeling of controlling one’s own actions and, through them, impacting the external environment (i.e. Sense of Agency—SoA) can be relevant in the eating disorders (EDs) symptomatology. Yet, it has been poorly investigated. This study aims to implicitly assess SoA exploiting the Sensory Attenuation paradigm in two groups of EDs patients (Anorexia Nervosa Restrictive and Anorexia Nervosa Binge-Purging or Bulimia Nervosa) compared to a control group. We find that controls perceive self-generated stimuli as less intense than other-generated ones showing the classic pattern of sensory attenuation. By contrast, EDs patients show the opposite pattern, with self-generated perceived as more intense than other-generated stimuli. This result indicates an alteration of the implicit component of the feeling of control in EDs patients, thus suggesting a potential implication of these results for the clinical practice and the treatment of EDs symptomatology.
Single-cell RNA sequencing to detect age-associated genes that identify senescent cells in the liver of aged mice
Authors: Doshida Yuta , Hashimoto Shinichi , Iwabuchi Sadahiro , Takino Yuka , Ishiwata Toshiyuki , Aigaki Toshiro , Ishigami Akihito 
Published: August 2023

AbstractSenescent cells are predicted to occur and increase in animal tissues with aging. However, senescent cells in the tissues of aged animals remain to be identified. We refer to the marker genes to identify senescent cells in tissues as “age-associated genes”. In this study, we searched for age-associated genes to identify senescent cells in the livers of aged animals. We performed single-cell RNA sequencing (scRNA-seq) to screen candidates for age-associated genes using young and aged rat primary hepatocytes. To remove animal species specificity, gene expression analyses in mouse livers were performed, confirming age-associated increases in the mRNA expression levels of Glipr1, Clec12a, and Phlda3. Moreover, the mRNA expression levels of Glipr1 and Phlda3 were increased by stress-induced premature senescence using doxorubicin in primary hepatocytes and livers of young mice. Transcriptome data of aged rat hepatocytes suggested that Glipr1, Clec12a, and Phlda3 were expressed in almost identical cells. Fluorescence in situ hybridization (FISH) confirmed the presence of cells with abundant Glipr1, Clec12a, and Phlda3 mRNA in 27-month-old mouse primary hepatocytes, which are considered to be senescent cells. This study is the first to identify Glipr1, Clec12a, and Phlda3 as age-associated genes in the mouse liver.
Resting state default mode network is associated with wise advising
Authors: Hu Chao S. , Zheng Yanbin , Dong Guang-heng , Glassman Harley , Huang Chenli , Xuan Ran 
Published: August 2023

AbstractDefault mode network (DMN) may be associated with wisdom (i.e., mature understanding of life featured by perspectival metacognition) when advising from a self-referential perspective due to the involvement of the DMN in reflecting on personal life experiences. After a resting-state functional MRI scan, 52 adults advised some youths going through life dilemmas, half from a second-person perspective and half from a third. After advising each youth, participants indicated the psychological distance they felt between themselves and the youth. The amplitude of low-frequency fluctuation (ALFF) was measured in the DMN during resting states. Moreover, trained raters rated the participants' advice on wisdom criteria (i.e., metacognitive humility (MH), meta-level flexibility, and perspective-taking). The results showed that participants felt a significantly smaller psychological distance from the youth when advising from the second- than the third-person perspective. Moreover, only when advising from the second-person perspective was MH associated with ALFF in regions within the DMN (i.e., right rostral anterior cingulate cortex (ACC) and left dorsomedial prefrontal cortex). The right rostral ACC showed a significantly greater association with MH from the second- than the third-person perspective. Therefore, resting-state DMN activities may be important for self-involved wisdom performance (e.g., giving advice directly to others).
Lateral interactions between CD276 and CD147 are essential for stemness in breast cancer: a novel insight from proximal proteome analysis
Authors: Seo Yu Ri , Lee Junghyeon , Ryu Han Suk , Kim EunHee G. , Kim So Hyun , Jeong Jieun , Jung Hyeryeon , Jung YeoJin , Kim Han Byeol , Jo Yeon Hui , Kim Yeong Dong , Jin Min-Sun , Lee Yong Yook , Kim Kristine M. , Yi Eugene C. 
Published: August 2023

AbstractOncogenic cell-surface membrane proteins contribute to the phenotypic and functional characteristics of cancer stem cells (CSCs). We employed a proximity-labeling proteomic approach to quantitatively analyze the cell-surface membrane proteins in close proximity to CD147 in CSCs. Furthermore, we compared CSCs to non-CSCs to identify CSC-specific cell-surface membrane proteins that are closely interact with CD147 and revealed that lateral interaction between CD147 and CD276 concealed within the lipid raft microdomain in CSCs, confers resistance to docetaxel, a commonly used chemotherapy agent for various cancer types, including metastatic breast cancer. Moreover, we investigated the clinical relevance of CD147 and CD276 co-expression in HER2+ breast cancer (BC) and triple-negative breast cancer patients who underwent chemotherapy. We observed poor disease-free survival and Overall survival rates in patients of CD147 and CD276 (p = 0.04 and 0.08, respectively). Subsequent immunohistochemical analysis in independent cohorts of HER2+ BC support for the association between co-expression of CD147 and CD276 and a poor response to chemotherapy. Collectively, our study suggests that the lateral interaction between CD147 and its proximal partners, such as CD276, may serve as a poor prognostic factor in BC and a predictive marker for the critical phenotypic determinant of BC stemness.
Selective UMLS knowledge infusion for biomedical question answering
Authors: Park Hyeryun , Son Jiye , Min Jeongwon , Choi Jinwook 
Published: August 2023

AbstractOne of the artificial intelligence applications in the biomedical field is knowledge-intensive question-answering. As domain expertise is particularly crucial in this field, we propose a method for efficiently infusing biomedical knowledge into pretrained language models, ultimately targeting biomedical question-answering. Transferring all semantics of a large knowledge graph into the entire model requires too many parameters, increasing computational cost and time. We investigate an efficient approach that leverages adapters to inject Unified Medical Language System knowledge into pretrained language models, and we question the need to use all semantics in the knowledge graph. This study focuses on strategies of partitioning knowledge graph and either discarding or merging some for more efficient pretraining. According to the results of three biomedical question answering finetuning datasets, the adapters pretrained on semantically partitioned group showed more efficient performance in terms of evaluation metrics, required parameters, and time. The results also show that discarding groups with fewer concepts is a better direction for small datasets, and merging these groups is better for large dataset. Furthermore, the metric results show a slight improvement, demonstrating that the adapter methodology is rather insensitive to the group formulation.