bluuebunny/crossref_metadata_2025_split huggingface dataset:
The New Small Wheel electronics
Authors: Iakovidis G. , Levinson L. , Afik Y. , Alexa C. , Alexopoulos T. , Ameel J. , Amidei D. , Antrim D. , Badea A. , Bakalis C. , Boterenbrood H. , Brener R.S. , Chan S. , Chapman J. , Chatzianastasiou G. , Chen H. , Chu M.C. , Coliban R.M. , Costa de Paiva T. , de Geronimo G. , Edgar R. , Felt N. , Francescato S. , Franklin M. , Geralis T. , Gigliotti K. , Giromini P. , Gkountoumis P. , Grayzman I. , Guan L. , Guimaraes da Costa J. , Han L. , Hou S. , Hu X. , Hu K. , Huth J. , Ivanovici M. , Jin G. , Johns K. , Kajomovitz E. , Kehris G. , Kiskiras I. , Koulouris A. , Kyriakis E. , Lankford A. , Lee L. , Leung H. , Li F. , Liang Y. , Lu H. , Lupu N. , Martinez V. , Martoiu S. , Matakias D. , Mehalev I. , Mesolongitis I. , Miao P. , Mikenberg G. , Moleri L. , Moschovakos P. , Narevicius J. , Oliver J. , Pietreanu D. , Pinkham R. , Politis E. , Polychronakos V. , Popa S. , Prapa M.M. , Ravinovich I. , Roich A. , Rojas Caballero R.A. , Rozen Y. , Schernau M. , Schwartz T. , Scott G. , Shaked O. , Solis M. , Sun S. , Taffard A. , Tang S. , Tarem Z. , Tse W. , Tu Y. , Tuna A. , Tzanis P. , Tzanos S. , Vari R. , Vasile M. , Vdovin A. , Vermeulen J. , Wang J. , Wang X. , Wang A. , Wang R. , Xiao X. , Yao L. , Yildiz C. , Zachariadou K. , Zhou B. , Zhu J. , Zimmermann S.U. , Zormpa O. 
Published: May 2023

Abstract
The increase in luminosity, and consequent higher
backgrounds, of the LHC upgrades require improved rejection of fake
tracks in the forward region of the ATLAS Muon Spectrometer. The
New Small Wheel upgrade of the Muon Spectrometer aims to reduce the
large background of fake triggers from track segments that don't
originate from the interaction point. The New Small Wheel employs
two detector technologies, the resistive strip Micromegas detectors
and the “small” Thin Gap Chambers, with a total of 2.45 million
electrodes to be sensed. The two technologies require the design of
a complex electronics system given that it consists of two different
detector technologies and is required to provide both precision
readout and a fast trigger. It will operate in a high background
radiation region up to about 20 kHz/cm2 at the expected HL-LHC
luminosity of
ℒ = 7.5 × 1034 cm-2 s-1. The
architecture of the system is strongly defined by the GBTx data
aggregation ASIC, the newly-introduced FELIX data router and the
software based data handler of the ATLAS detector. The electronics
complex of this new detector was designed and developed in the last
ten years and consists of multiple radiation tolerant Application
Specific Integrated Circuits, multiple front-end boards, dense
boards with FPGA's and purpose-built Trigger Processor boards within
the ATCA standard. The New Small Wheel has been installed in 2021
and is undergoing integration within ATLAS for LHC Run 3. It should
operate through the end of Run 4 (December 2032). In this
manuscript, the overall design of the New Small Wheel electronics is
presented.
Hunting for bumps in the margins
Authors: Yallup David , Handley Will 
Published: May 2023

Abstract
Data driven modelling is vital to many analyses at collider
experiments, however the derived inference of physical properties
becomes subject to details of the model fitting procedure. This work
brings a principled Bayesian picture — based on the marginal
likelihood — of both data modelling and signal extraction to a
common collider physics scenario. First the marginal likelihood
based method is used to propose a more principled construction of
the background process, systematically exploring a variety of
candidate shapes. Second the picture is extended to propose the
marginal likelihood as a useful tool for anomaly detection
challenges in particle physics. This proposal offers insight into
both precise background model determination and demonstrates a
flexible method to extend signal determination beyond a simple bump
hunt.
A new approach to the study of spacelike submanifolds in a spherical Friedmann–Lemaître–Robertson–Walker spacetime: characterization of the stationary spacelike submanifolds as an application
Authors: Ferreira D , Lima E A , Palomo F J , Romero A 
Published: May 2023

Abstract
A natural codimension one isometric embedding of each

(
n
+
1
)

-dimensional spherical Friedmann–Lemaître–Robertson–Walker (FLRW) spacetime

I

×
f

S

n

in the

(
n
+
2
)

-dimensional Lorentz–Minkowski spacetime

L

n
+
2

permits to contemplate

I

×
f

S

n

as a rotation Lorentzian hypersurface in

L

n
+
2

. After a detailed study of such Lorentzian hypersurfaces, any k-dimensional spacelike submanifold of such an FLRW spacetime can be contemplated as a spacelike submanifold of

L

n
+
2

. Then, we use that situation to study k-dimensional stationary (i.e. of zero mean curvature vector field) spacelike submanifolds of the FLRW spacetime. In particular, we prove a wide extension of the Lorentzian version of the classical Takahashi theorem, giving a characterization of stationary spacelike submanifolds of

I

×
f

S

n

when contemplating them as spacelike submanifolds of

L

n
+
2

.
A QP perspective on topology change in Poisson–Lie T-duality
Authors: Arvanitakis Alex S , Blair Chris D A , Thompson Daniel C 
Published: May 2023

Abstract
We describe topological T-duality and Poisson–Lie T-duality in terms of QP (differential graded symplectic) manifolds and their canonical transformations. Duality is mediated by a QP-manifold on doubled non-abelian ‘correspondence’ space, from which we can perform mutually dual symplectic reductions, where certain canonical transformations play a vital role. In the presence of spectator coordinates, we show how the introduction of bibundle structure on correspondence space realises changes in the global fibration structure under Poisson–Lie duality. Our approach can be directly translated to the worldsheet to derive dual string current algebras. Finally, the canonical transformations appearing in our reduction procedure naturally suggest a Fourier–Mukai integral transformation for Poisson–Lie T-duality.
Electronic structure and topological phase transition in multi-orbital triangular lattice with rotation and mirror symmetry breaking
Authors: Hua Chenqiang , Gao Wenjin , Wu Meimei , Niu Tianchao , Zhou Miao 
Published: May 2023

Abstract
Triangular lattice is one of the most generic structures in the two-dimensional (2D) limit with numerous exotic properties, such as magnetic frustration and quantum spin liquid. Here, we investigate the electronic properties of a multi-orbital (p

x
, p

y
, p

z
) triangular lattice while focusing on the role of rotation and mirror symmetry breaking in regulating the topological phase diagram. The tight-binding modeling reveals that rotation symmetry (

C

2
z

) breaking splits the Dirac point and preserves the nodal loop. A further inclusion of broken horizontal mirror symmetry (

M

h

) destroys the nodal loop. Consequently, with spin–orbit coupling (SOC), the (p

x
, p

y
, p

z
)-orbital triangular lattice is topologically non-trivial with only

C

2
z

or

M

h

symmetry breaking. With both symmetries breaking, it becomes trivial, except when the SOC is large enough to initiate band inversion. For real materials, we propose that the recently grown AgSe/AgTe monolayer in a binary honeycomb structure is an ideal system to realize the multi-orbital triangular lattice. The first-principles calculations demonstrate that free-standing AgSe and AgTe are Z
2 non-trivial. On the Ag(111) substrate, AgSe becomes trivial because of the breaking of both

C

2
z

and

M

h

symmetries, whereas AgTe remains non-trivial because of the strong SOC of Te. Our work not only provides physical insights into the experimentally synthesized 2D binary honeycomb structures but also highlights the manipulation of electronic and topological properties through symmetry/orbital physics, which are valuable for designing new quantum materials and devices.
Male and female Brandt’s voles have higher reproductive success when they have more mating partners regardless of population density
Authors: Zhang Xin , Firman Renée C , Song Mingjing , Li Guoliang , Cheng Chaoyuan , Liu Jing , Huang Shuli , Batsuren Erdenetuya , Zhang Zhibin 
Published: May 2023

Abstract
Although population density and body mass are known to alter the mating strategies of individuals, their impacts on reproductive success have not been fully investigated. We examined genetic mating system variation (estimated number of mating partners), reproductive success (offspring number), and sperm competition intensity (sires per litter) in semi-natural populations of Brandt’s voles (Lasiopodomys brandtii) under low-, medium- and high-densities. We used 12 microsatellite genetic markers and parentage assignment of 3516 voles, with the aim of identifying the estimated number of mating partners and offspring produced by founder individuals. We provided strong evidence that individuals with more mating partners experienced increased reproductive success in all density groups, as measured by the production of more offspring, compared with individuals that had fewer mating partners. Further, we found that large males had more mating partners (especially in high-population density enclosures) and also produced more offspring relative to smaller males. In high-density (HD) enclosures, the average reproductive success per female vole was lower (a negative density-dependent effect), but voles had more mating partners, more sires per litter, but lower paternity skew compared to low-density enclosures. Our results suggests that Brandt’s voles increased reproductive success through increasing mating partners under HD stress which may have significant implications in offsetting the negative density-dependency effect on population growth.
McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks
Authors: Li Lun , Xu Bo , Tian Dongmei , Wang Anke , Zhu Junwei , Li Cuiping , Li Na , Zhao Wei , Shi Leisheng , Xue Yongbiao , Zhang Zhang , Bao Yiming , Zhao Wenming , Song Shuhui 
Published: May 2023

Abstract
Haplotype networks are graphs used to represent evolutionary relationships between a set of taxa and are characterized by intuitiveness in analyzing genealogical relationships of closely related genomes. We here propose a novel algorithm termed McAN that considers mutation spectrum history (mutations in ancestry haplotype should be contained in descendant haplotype), node size (corresponding to sample count for a given node) and sampling time when constructing haplotype network. We show that McAN is two orders of magnitude faster than state-of-the-art algorithms without losing accuracy, making it suitable for analysis of a large number of sequences. Based on our algorithm, we developed an online web server and offline tool for haplotype network construction, community lineage determination, and interactive network visualization. We demonstrate that McAN is highly suitable for analyzing and visualizing massive genomic data and is helpful to enhance the understanding of genome evolution. Availability: Source code is written in C/C++ and available at https://github.com/Theory-Lun/McAN and https://ngdc.cncb.ac.cn/biocode/tools/BT007301 under the MIT license. Web server is available at https://ngdc.cncb.ac.cn/bit/hapnet/. SARS-CoV-2 dataset are available at https://ngdc.cncb.ac.cn/ncov/. Contact: songshh@big.ac.cn (Song S), zhaowm@big.ac.cn (Zhao W), baoym@big.ac.cn (Bao Y), zhangzhang@big.ac.cn (Zhang Z), ybxue@big.ac.cn (Xue Y).
Broad phylogenetic analyses of the leech family Glossiphoniidae (Annelida: Clitellata) reveals two independent origins of kangaroo leeches
Authors: Torres-Carrera Gerardo , Muñiz-Pareja Flavia C , Maza-Acuña Albert N , Oceguera-Figueroa Alejandro 
Published: May 2023

Abstract
Parental care is uncommon within Annelida. However, a remarkable exception is in the leech family Glossiphoniidae in which all its members keep their offspring attached to the ventral surface for varying lengths of time. Considered as the culmination in the evolution of parental care in leeches, two glossiphoniids, Marsupiobdella africana from South Africa and Maiabdella batracophila from South America, have a brood pouch or marsupium in which their offspring are protected. Interestingly, the structure is located in exactly the same region of the body in both species. Based on phylogenetic analysis of Glossiphoniidae, including use of nuclear and mitochondrial DNA sequences, we investigated for the first time the phylogenetic position of the two kangaroo leeches. Our results indicate that marsupium-bearing leeches belong to separate lineages, with each species more closely related to other leeches from their respective continent. We infer that the marsupium evolved independently from ancestors that maintained their eggs inside thin-walled, flexible, transparent cocoons attached directly to the ventral surface of the parents. Together with the evolution of a marsupium, both species have also ceased to produce cocoons, which are normally a characteristic of Glossiphoniidae.
Creatine metabolism at the uterine–placental interface throughout gestation in sheep
Authors: Sah Nirvay , Stenhouse Claire , Halloran Katherine M , Moses Robyn M , Seo Heewon , Burghardt Robert C , Johnson Gregory A , Wu Guoyao , Bazer Fuller W 
Published: May 2023

Abstract
The placenta requires high levels of adenosine triphosphate to maintain a metabolically active state throughout gestation. The creatine–creatine kinase–phosphocreatine system is known to buffer adenosine triphosphate levels; however, the role(s) creatine–creatine kinase–phosphocreatine system plays in uterine and placental metabolism throughout gestation is poorly understood. In this study, Suffolk ewes were ovariohysterectomized on Days 30, 50, 70, 90, 110 and 125 of gestation (n = 3–5 ewes/per day, except n = 2 on Day 50) and uterine and placental tissues subjected to analyses to measure metabolites, mRNAs, and proteins related to the creatine–creatine kinase–phosphocreatine system. Day of gestation affected concentrations and total amounts of guanidinoacetate and creatine in maternal plasma, amniotic fluid and allantoic fluid (P &lt; 0.05). Expression of mRNAs for arginine:glycine amidinotransferase, guanidinoacetate methyltransferase, creatine kinase B, and solute carrier 16A12 in endometria and for arginine:glycine amidinotransferase and creatine kinase B in placentomes changed significantly across days of gestation (P &lt; 0.05). The arginine:glycine amidinotransferase protein was more abundant in uterine luminal epithelium on Days 90 and 125 compared to Days 30 and 50 (P &lt; 0.01). The chorionic epithelium of placentomes expressed guanidinoacetate methyltransferase and solute carrier 6A13 throughout gestation. Creatine transporter (solute carrier 6A8) was expressed by the uterine luminal epithelium and trophectoderm of placentomes throughout gestation. Creatine kinase (creatine kinase B and CKMT1) proteins were localized primarily to the uterine luminal epithelium and to the placental chorionic epithelium of placentomes throughout gestation. Collectively, these results demonstrate cell-specific and temporal regulation of components of the creatine–creatine kinase–phosphocreatine system that likely influence energy homeostasis for fetal–placental development.
Low-grade cutaneous immune-related adverse events leading to immunotherapy discontinuation
Authors: Jacoby Ted V , Asdourian Maria S , Shah Nishi  , Otto Tracey S , Thompson Leah L , Reynolds Kerry L , Chen Steven T 
Published: May 2023

Cutaneous immune-related adverse events (cirAEs) are a common toxicity arising from the use of immune checkpoint inhibitors (ICIs) to treat cancer. We provide a case series of 10 patients who presented with low-severity cirAEs and who had their ICI discontinued against published guidelines, and we highlight areas for intervention to decrease the risk of this occurrence.
Face recognition ability can be predicted by microstructural properties of white matter: a study of diffusion tensor imaging (DTI)
Authors: Zhou Guifei , Xiao Naiqi G , Sun Yuhao , Li Hong , Liu Jiangang 
Published: May 2023

AbstractThere is a great individual difference in people’s face recognition ability (FRA). This study aimed to reveal the neural mechanism underlying such individual differences. Elastic-net regression models were constructed to predict FRA based on the white matter (WM) microstructural properties. We found that FRA can be accurately predicted by the WM microstructural properties. For the right inferior longitudinal fasciculus (ILF) and bilateral arcuate fasciculus (AF), FRA was correlated negatively to fractional anisotropy (FA), but positively to radial diffusivity (RD). In contrast, for the corpus callosum forceps minor (CFM), FRA was correlated positively to FA, but negatively to RD. Such various patterns of the WM microstructural properties suggested a positive correlation between FRA and fiber diameter for the right ILF and bilateral AF, but a negative correlation between FRA and diameter of the CFM. These findings reflected that FRA was correlated positively to connectivities of the right ILF and bilateral AF, but negatively to those of the CFM. These findings not only confirmed the significant role of the right ILF in face recognition, but also revealed the involvement of the bilateral AF and CFM in face recognition, particularly implying the important role of hemisphere lateralization modulated by transcallosal connectivity in face recognition.
Enhanced intersubject similarity in functional connectivity by long-term abacus training
Authors: Zhang Yi , Xu Tianyong , Han Xiao , Wang Yanjie , Liu Huafeng , Zhou Changsong , Chen Feiyan 
Published: May 2023

Abstract
The individual difference of intrinsic functional connectivity is increasingly acknowledged to be biologically informative and behaviorally relevant. However, such valuable information is still discounted as a stochastic variation in previous studies of cognitive training. Here, we explored the plasticity of intersubject similarity in functional connectivity (ISFC), induced by long-term abacus-based mental calculation (AMC) training. Using a longitudinal dataset (AMC: n = 40, 5-year training; Control: n = 43), we found robust training effect of enhanced ISFC, after accounting for the factor of development. Notably, the enhancement focused on selective subsets of FCs, or the “critical FCs,” which predominantly impacted the default-mode and visual networks. Using a cross-sectional dataset with a larger sample (AMC: n = 93, 1/3/5-year training; Control: n = 110), we observed that the “critical FCs” and its intersubject similarity could predict mental calculation ability and its intersubject similarity, respectively, in the AMC group. However, such predictions cannot be generalized to the control group, suggesting that long-term training may be a prerequisite for establishing such brain–behavior relationships. Jointly, our findings implicated that the enhanced ISFC with profound impact on the default-mode network could be a plastic change that is associated with behavioral gains of training.
Update on persistent acute kidney injury in critical illnesses
Authors: Samoni Sara , De Rosa Silvia , Ronco Claudio , Castellano Giuseppe 
Published: May 2023

ABSTRACT
Acute kidney injury (AKI) affects about half of patients admitted to the intensive care unit (ICU), and worsens their short- and long-term outcomes. Apparently self-limiting AKI episodes initiate a progression toward chronic kidney disease (CKD) through cellular and molecular mechanisms that are yet to be explained. In particular, persistent AKI, defined in 2016 by the Acute Dialysis Quality Initiative as an AKI which lasts more than 48 h from its onset, has been correlated with higher morbidity and mortality, and with a higher progression to acute kidney disease (AKD) and CKD than transient AKI (i.e. AKI with a reversal within 48 h). This classification has been also used in the setting of solid organ transplantation, demonstrating similar outcomes. Due to its incidence and poor prognosis and because prompt interventions seem to change its course, persistent AKI should be recognized early and followed-up also after its recovery. However, while AKI and CKD are well-described syndromes, persistent AKI and AKD are relatively new entities. The purpose of this review is to highlight the key phases of persistent AKI in ICU patients in terms of both clinical and mechanistic features in order to offer to clinicians and researchers an updated basis from which to start improving patients’ care and direct future research.
DECIDE: Delphi Expert Consensus Statement on Inflammatory Bowel Disease Dysplasia Shared Management Decision-Making
Authors: Kabir Misha , Thomas-Gibson Siwan , Tozer Phil J , Warusavitarne Janindra , Faiz Omar , Hart Ailsa , Allison Lisa , Acheson Austin G , Atici Semra Demirli , Avery Pearl , Brar Mantaj , Carvello Michele , Choy Matthew C , Dart Robin J , Davies Justin , Dhar Anjan , Din Shahida , Hayee Bu’Hussain , Kandiah Kesavan , Katsanos Konstantinos H , Lamb Christopher Andrew , Limdi Jimmy K , Lovegrove Richard E , Myrelid Pär , Noor Nurulamin , Papaconstantinou Ioannis , Petrova Dafina , Pavlidis Polychronis , Pinkney Thomas , Proud David , Radford Shellie , Rao Rohit , Sebastian Shaji , Segal Jonathan P , Selinger Christian , Spinelli, Antonino , Thomas Kathryn , Wolthuis Albert , Wilson Ana 
Published: May 2023

Abstract

Background and Aims
Inflammatory bowel disease colitis-associated dysplasia is managed with either enhanced surveillance and endoscopic resection or prophylactic surgery. The rate of progression to cancer after a dysplasia diagnosis remains uncertain in many cases and patients have high thresholds for accepting proctocolectomy. Individualised discussion of management options is encouraged to take place between patients and their multidisciplinary teams for best outcomes. We aimed to develop a toolkit to support a structured, multidisciplinary and shared decision-making approach to discussions about dysplasia management options between clinicians and their patients.

Methods
Evidence from systematic literature reviews, mixed-methods studies conducted with key stakeholders, and decision-making expert recommendations were consolidated to draft consensus statements by the DECIDE steering group. These were then subjected to an international, multidisciplinary modified electronic Delphi process until an a priori threshold of 80% agreement was achieved to establish consensus for each statement.

Results
In all, 31 members [15 gastroenterologists, 14 colorectal surgeons and two nurse specialists] from nine countries formed the Delphi panel. We present the 18 consensus statements generated after two iterative rounds of anonymous voting.

Conclusions
By consolidating evidence for best practice using literature review and key stakeholder and decision-making expert consultation, we have developed international consensus recommendations to support health care professionals counselling patients on the management of high cancer risk colitis-associated dysplasia. The final toolkit includes clinician and patient decision aids to facilitate shared decision-making.