bluuebunny/crossref_metadata_2025_split huggingface dataset:
Blood-based gene expression as non-lethal tool for inferring salinity-habitat history of European eel (Anguilla anguilla)
Authors: Bertolini Francesca , Rohtla Mehis , Parzanini Camilla , Tomkiewicz Jonna , Durif Caroline M. F. 
Published: December 2022

AbstractThe European eel is a facultative catadromous species, meaning that it can skip the freshwater phase or move between marine and freshwater habitats during its continental life stage. Otolith microchemistry, used to determine the habitat use of eel or its salinity history, requires the sacrifice of animals. In this context, blood-based gene expression may represent a non-lethal alternative. In this work, we tested the ability of blood transcriptional profiling to identify the different salinity-habitat histories of European eel. Eels collected from different locations in Norway were classified through otolith microchemistry as freshwater residents (FWR), seawater residents (SWR) or inter-habitat shifters (IHS). We detected 3451 differentially expressed genes from blood by comparing FWR and SWR groups, and then used that subset of genes in a machine learning approach (i.e., random forest) to the extended FWR, SWR, and IHS group. Random forest correctly classified 100% of FWR and SWR and 83% of the IHS using a minimum of 30 genes. The implementation of this non-lethal approach may replace otolith-based microchemistry analysis for the general assessment of life-history tactics in European eels. Overall, this approach is promising for the replacement or reduction of other lethal analyses in determining certain fish traits.
Neural Inverse Design of Nanostructures (NIDN)
Authors: Gómez Pablo , Toftevaag Håvard Hem , Bogen-Storø Torbjørn , Aranguren van Egmond Derek , Llorens José M. 
Published: December 2022

AbstractIn the recent decade, computational tools have become central in material design, allowing rapid development cycles at reduced costs. Machine learning tools are especially on the rise in photonics. However, the inversion of the Maxwell equations needed for the design is particularly challenging from an optimization standpoint, requiring sophisticated software. We present an innovative, open-source software tool calledNeural Inverse Design of Nanostructures(NIDN) that allows designing complex, stacked material nanostructures using a physics-based deep learning approach. Instead of a derivative-free or data-driven optimization or learning method, we perform a gradient-based neural network training where we directly optimize the material and its structure based on its spectral characteristics. NIDN supports two different solvers, rigorous coupled-wave analysis and a finite-difference time-domain method. The utility and validity of NIDN are demonstrated on several synthetic examples as well as the design of a 1550 nm filter and anti-reflection coating. Results match experimental baselines, other simulation tools, and the desired spectral characteristics. Given its full modularity in regard to network architectures and Maxwell solvers as well as open-source, permissive availability, NIDN will be able to support computational material design processes in a broad range of applications.
The widely distributed soft coral Xenia umbellata exhibits high resistance against phosphate enrichment and temperature increase
Authors: Mezger Selma D. , Klinke Annabell , Tilstra Arjen , El-Khaled Yusuf C. , Thobor Bianca , Wild Christian 
Published: December 2022

AbstractBoth global and local factors affect coral reefs worldwide, sometimes simultaneously. An interplay of these factors can lead to phase shifts from hard coral dominance to algae or other invertebrates, particularly soft corals. However, most studies have targeted the effects of single factors, leaving pronounced knowledge gaps regarding the effects of combined factors on soft corals. Here, we investigated the single and combined effects of phosphate enrichment (1, 2, and 8 μM) and seawater temperature increase (26 to 32 °C) on the soft coralXenia umbellataby quantifying oxygen fluxes, protein content, and stable isotope signatures in a 5-week laboratory experiment. Findings revealed no significant effects of temperature increase, phosphate enrichment, and the combination of both factors on oxygen fluxes. However, regardless of the phosphate treatment, total protein content and carbon stable isotope ratios decreased significantly by 62% and 7% under temperature increase, respectively, suggesting an increased assimilation of their energy reserves. Therefore, we hypothesize that heterotrophic feeding may be important forX. umbellatato sustain their energy reserves under temperature increase, highlighting the advantages of a mixotrophic strategy. Overall,X. umbellatashows a high tolerance towards changes in global and local factors, which may explain their competitive advantage observed at many Indo-Pacific reef locations.
No evidence for an association between alcohol consumption and Multiple Sclerosis risk: a UK Biobank study
Authors: Dreyer-Alster Sapir , Achiron Anat , Giovannoni Gavin , Jacobs Benjamin M. , Dobson Ruth 
Published: December 2022

AbstractMultiple Sclerosis (MS) has been linked to a variety of environmental risk factors, including smoking, Epstein-Barr Virus infection, and childhood obesity. There is some evidence to support a relationship between alcohol consumption and MS risk, but this finding has been inconsistent across cohorts. A protective link between alcohol consumption and MS risk is seen in Swedish and Danish cohorts, however evidence from other cohorts and mendelian randomisation studies have failed to support this relationship. We assessed the relationship between alcohol consumption (never vs. ever drinking) and MS in 409,228 individuals (2100 with MS) from UK Biobank (UKB). We used multivariable logistic regression models adjusted for age and sex. To determine whether there was evidence of statistical interaction between alcohol consumption and HLA-DRB1*15:01 genotype, we calculated interaction on the additive and multiplicative scales. We analysed data from 2100 individuals with MS (72.3% female, median age at recruitment 56) and 407,128 controls (53.9% female, median age at recruitment 58). We found no evidence for an association between alcohol consumption and MS risk (OR = 1.12, 95% CI 0.61–2.08, p = 0.314). As expected, the HLA-DRB1*15:01 allele was strongly associated with MS risk (OR = 2.72, 95% CI 2.72–2.72, p < 2 × 10−16). We found no evidence of statistical interaction between non-drinking and MS risk on either the multiplicative scale (p = 0.8) or on the additive scale (Attributable Proportion = 0.03, 95% CI − 0.43–0.29, P = 0.45). Empirical power calculations indicated reasonable statistical power (85%) to detect a protective effect of alcohol consumption of Relative Risk ≤ 0.7. We were thus unable to replicate findings from other cohorts within UK Biobank. The inconsistent association seen between studies may reflect limited statistical power to detect a weak effect, differences in population characteristics, or the lack of a true causal association.
Photobiological production of high-value pigments via compartmentalized co-cultures using Ca-alginate hydrogels
Authors: Zhao Runyu , Sengupta Annesha , Tan Albern X. , Whelan Ryan , Pinkerton Taylor , Menasalvas Javier , Eng Thomas , Mukhopadhyay Aindrila , Jun Young-Shin , Pakrasi Himadri B. , Tang Yinjie J. 
Published: December 2022

AbstractEngineered cyanobacterium Synechococcus elongatus can use light and CO2 to produce sucrose, making it a promising candidate for use in co-cultures with heterotrophic workhorses. However, this process is challenged by the mutual stresses generated from the multispecies microbial culture. Here we demonstrate an ecosystem where S. elongatus is freely grown in a photo-bioreactor (PBR) containing an engineered heterotrophic workhorse (either β-carotene-producing Yarrowia lipolytica or indigoidine-producing Pseudomonas putida) encapsulated in calcium-alginate hydrogel beads. The encapsulation prevents growth interference, allowing the cyanobacterial culture to produce high sucrose concentrations enabling the production of indigoidine and β-carotene in the heterotroph. Our experimental PBRs yielded an indigoidine titer of 7.5 g/L hydrogel and a β-carotene titer of 1.3 g/L hydrogel, amounts 15–22-fold higher than in a comparable co-culture without encapsulation. Moreover, 13C-metabolite analysis and protein overexpression tests indicated that the hydrogel beads provided a favorable microenvironment where the cell metabolism inside the hydrogel was comparable to that in a free culture. Finally, the heterotroph-containing hydrogels were easily harvested and dissolved by EDTA for product recovery, while the cyanobacterial culture itself could be reused for the next batch of immobilized heterotrophs. This co-cultivation and hydrogel encapsulation system is a successful demonstration of bioprocess optimization under photobioreactor conditions.
Switching azide and alkyne tags on bioorthogonal reporters in metabolic labeling of sialylated glycoconjugates: a comparative study
Authors: Scache Jodie , Rigolot Vincent , Lion Cédric , Mortuaire Marlène , Lefebvre Tony , Biot Christophe , Vercoutter-Edouart Anne-Sophie 
Published: December 2022

AbstractSialylation of cell surface glycans plays an essential role in cell–cell interaction and communication of cells with their microenvironment. Among the tools that have been developed for the study of sialylation in living cells, metabolic oligosaccharide engineering (MOE) exploits the biosynthetic pathway of sialic acid (Sia) to incorporate unnatural monosaccharides into nascent sialylatedglycoconjugates, followed by their detection by a bioorthogonal ligation of a molecular probe. Among bioorthogonal reactions, the copper-catalyzed azide-alkyne cycloaddition (CuAAC) is the only ligation where both reactive tags can be switched on the chemical reporter or on the probe, making this reaction very flexible and adaptable to various labeling strategies. Azide- and alkyne-modified ManNAc and Sia reporters have been widely used, but per-O-acetylated ManNAz (Ac4ManNAz) remains the most popular choice so far for tracking intracellular processing of sialoglycans and cell surface sialylation in various cells. Taking advantage of CuAAC, we compared the metabolic incorporation of ManNAl, ManNAz, SiaNAl, SiaNAz and Ac4ManNAz in the human colon cell lines CCD841CoN, HT29 and HCT116, and in the two gold standard cell lines, HEK293 and HeLa. Using complementary approaches, we showed marked differences in the efficiency of labeling of sialoglycoproteins between the different chemical reporters in a given cell line, and that switching the azide and alkyne bioorthogonal tags on the analogs highly impacted their metabolic incorporation in the human colon cell lines. Our results also indicated that ManNAz was the most promiscuous metabolized reporter to study sialylation in these cells.
Experimental study of an asymmetric valveless pump to elucidate insights into strategies for pediatric extravascular flow augmentation
Authors: Anatol J. , García-Díaz M. , Barrios-Collado C. , Moneo-Fernández J. A. , Horvath M. , Parra T. , Castro-Ruiz F. , Roche E. T. , Sierra-Pallares J. 
Published: December 2022

AbstractAsymmetric pumping is a sub-category of valveless pumping in which a flexible tube is rhythmically compressed in the transverse symmetry plane. Due to the resulting asymmetry between the suction and discharge pipes, a net pumping head is achieved. Asymmetric pumping is regarded as one of the main mechanisms responsible for the Liebau effect in addition to impedance pumping. However, there remains a paucity of research surrounding the governing parameters of asymmetric pumping. Here, we conducted an experimental study of the performance of an asymmetric pump, with an aim to assess its potential for extravascular flow augmentation. A custom flexible latex tube and experimental platform were developed for this purpose. We tested various tube thicknesses and pinching frequencies. Our results demonstrate that the performance is within the range of physiological requirements for pediatric circulatory devices (~ 1 L/min and < 30 mmHg). We conclude that due to the absence of reverse flow and its mechanical simplicity, pure asymmetric pumping is promising for selected cardiovascular applications with less complexity than other valveless techniques.
Doctoral researchers’ mental health and PhD training satisfaction during the German COVID-19 lockdown: results from an international research sample
Authors: Naumann Sandra , Matyjek Magdalena , Bögl Katharina , Dziobek Isabel 
Published: December 2022

AbstractAcademia has been facing a mental health crisis particularly affecting early career researchers (ECRs). Moreover, the COVID-19 pandemic posed an unprecedented burden on the mental health of many individuals. Therefore, we cross-sectionally investigated how doctoral researchers (N = 222) evaluate their mental health status and satisfaction with their PhD training before and during the pandemic. As compared to self-reported, retrospective evaluations about the pre-pandemic state, we found decreased satisfaction with PhD training and overall well-being. The whole sample exhibited high levels of personal and work-related burnout, a fifth indicated clinically meaningful levels of depressive symptoms and almost 25% experienced severe loneliness. When exploring predictors of depression, anxiety, and burnout, we identified low satisfaction with PhD training as the most prominent predictor for poor mental health, suggesting a link between the doctoral work and their mental health status. Females vs. males and doctoral researchers in individual doctorate vs. structured PhD programs reported higher symptoms of burnout. Our study replicates previous findings of poor mental health in doctoral researchers and indicates further decreases of mental wellbeing under the influence of the pandemic. Systematic adjustments in academia are required to improve the mental health of ECRs.
Psychometric functioning, measurement invariance, and external associations of the Relationship Assessment Scale in a sample of Polish Adults
Authors: Adamczyk Katarzyna , Kleka Paweł , Frydrychowicz Monika 
Published: December 2022

AbstractThe current article reports data from three Polish samples to examine the Relationship Assessment Scale (RAS) with respect to its unidimensionality, invariance across countries, gender, formal and informal relationships, degree of precision (or information) across latent levels of relationship satisfaction, and the functioning of individual items. The analyses of the data from the reference sample (n = 733) confirmed a clear 1-factor structure of the RAS-PL and good internal consistency. Configural, metric, and scalar invariance for countries (Poland, Hungary, USA), gender (women and men) and relationship types (formal and informal relationships) were achieved. Item Response Theory Analysis (IRT) suggested that the RAS-PL assesses relationship satisfaction most reliably at low to average levels. Analyses of the data from validation samples (n = 203 and n = 209) confirmed the convergent and divergent validity by weak, medium, and large correlations of the RAS-PL with measures of other theoretically related constructs. Concurrent criterion validity was demonstrated by a strong positive correlation between the RAS-PL and the intent to continue the current relationship. This investigation provides considerable psychometric information about the items and scale of the RAS-PL.
No difference in cerebral perfusion between the wild-type and the 5XFAD mouse model of Alzheimer’s disease
Authors: DeBay Drew R. , Phi Tân-Trào , Bowen Chris V. , Burrell Steven C. , Darvesh Sultan 
Published: December 2022

AbstractNeuroimaging with [2,2-dimethyl-3-[(2R,3E)-3-oxidoiminobutan-2-yl]azanidylpropyl]-[(2R,3E)-3-hydroxyiminobutan-2-yl]azanide;oxo(99Tc)technetium-99(3+) ([99mTc]HMPAO) single photon emission computed tomography (SPECT) is used in Alzheimer’s disease (AD) to evaluate regional cerebral blood flow (rCBF). Hypoperfusion in select temporoparietal regions has been observed in human AD. However, it is unknown whether AD hypoperfusion signatures are also present in the 5XFAD mouse model. The current study was undertaken to compare baseline brain perfusion between 5XFAD and wild-type (WT) mice using [99mTc]HMPAO SPECT and determine whether hypoperfusion is recapitulated in 5XFAD mice. 5XFAD and WT mice underwent a 45 min SPECT scan, 20 min after [99mTc]HMPAO administration. Whole brain and regional standardized uptake values (SUV) and regional relative standardized uptake values (SUVR) with whole brain reference were compared between groups. Brain perfusion was similar between WT and 5XFAD brains. Whole brain [99mTc]HMPAO retention revealed no significant difference in SUV (5XFAD, 0.372 ± 0.762; WT, 0.640 ± 0.955; p = 0.536). Similarly, regional analysis revealed no significant differences in [99mTc]HMPAO metrics between groups (SUV: 0.357 ≤ p ≤ 0.640; SUVR: 0.595 ≤ p ≤ 0.936). These results suggest apparent discrepancies in rCBF between human AD and the 5XFAD model. Establishing baseline perfusion patterns in 5XFAD mice is essential to inform pre-clinical diagnostic and therapeutic drug discovery programs.
Laboratory and semi-field efficacy evaluation of permethrin–piperonyl butoxide treated blankets against pyrethroid-resistant malaria vectors
Authors: Azizi Salum , Matowo Johnson , Mbewe Njelembo Joshua , Protopopoff Natacha , Athumani Rashid , Matiku Wambura , Shayo Magreth , Tenu Filemoni , Rowland Mark , Mosha Franklin , Kitau Jovin 
Published: December 2022

AbstractTo control pyrethroid-resistant malaria vectors, Indoor Residual Spraying (IRS) and Long-Lasting Insecticidal Nets (LLINs) that include additional ingredients to pyrethroid are being developed. Same progress needs to be made to the pyrethroid-treated blankets, which are more compatible with shelter structures found in emergency settings such as displaced populations. In the current study, efficacy of blankets treated with permethrin and piperonyl butoxide (PBO) was evaluated against pyrethroid-resistant Anopheles gambiae sensu stricto. Efficacy was compared with that of Olyset LLIN, Olyset Plus LLIN and untreated blanket in terms of mortality and blood-feeding inhibition against pyrethroid-resistant Anopheles gambiae mosquitoes. The current study indicates that, in emergency shelters such as migrant and refugee camps where LLINs cannot be used, PBO–permethrin blankets may provide protection against resistant mosquitoes if widely used. No side effects related to the use of the treated blankets were reported from the participants. These results need validation in a large-scale field trial to assess the epidemiological impact of the intervention, durability and acceptability of this new vector control strategy for malaria vector control.
On-surface synthesis and spontaneous segregation of conjugated tetraphenylethylene macrocycles
Authors: Li En , Lyu Cheng-Kun , Chen Chengyi , Xie Huilin , Zhang Jianyu , Lam Jacky Wing Yip , Tang Ben Zhong , Lin Nian 
Published: December 2022

AbstractCreating conjugated macrocycles has attracted extensive research interest because their unique chemical and physical properties, such as conformational flexibility, intrinsic inner cavities and aromaticity/antiaromaticity, make these systems appealing building blocks for functional supramolecular materials. Here, we report the synthesis of four-, six- and eight-membered tetraphenylethylene (TPE)-based macrocycles on Ag(111) via on-surface Ullmann coupling reactions. The as-synthesized macrocycles are spontaneously segregated on the surface and self-assemble as large-area two-dimensional mono-component supramolecular crystals, as characterized by scanning tunneling microscopy (STM). We propose that the synthesis benefits from the conformational flexibility of the TPE backbone in distinctive multi-step reaction pathways. This study opens up opportunities for exploring the photophysical properties of TPE-based macrocycles.
Droplet lift-off from hydrophobic surfaces from impact with soft-hydrogel spheres
Authors: Rabbi Rafsan , Kiyama Akihito , Allen John S. , Truscott Tadd 
Published: December 2022

AbstractDroplet impacts on superhydrophobic surfaces may result in complete bouncing, with the absence of contact hysteresis and viscous dissipation leading the droplet to fully rebound off the surface. This rebound usually happens in the retraction phase, when the droplet retracts back after reaching a maximum spread diameter. Here, we present experimental evidence of a bouncing phenomenon where a sessile droplet on a hydrophobic surface bounces off the surface in its spreading phase when a soft deformable hydrogel sphere axisymmetrically impacts the droplet. We term this as ‘Lift-Off’ and propose a simple force balance based on the deformation characteristics of the hydrogel sphere to explain the out-of-plane jump of the droplet during spreading. We observe three different impact regimes, and propose their dependency on a modified elastic ‘Mach’ number (Ma*) with Ma* ≈ 0.1 corresponding to the onset of lift-off. We also report on the unique acoustic signatures of lift-off cases, associated with the capture of air-bubbles through the air-borne retracting droplet rim. These results may have potential applications for drainage and surface cleaning, non-stick surface coating, industrial mixing and plant disease spreading.
Effects of Maturation and Chronological Aging on Auditory Spatial Processing: A Cross-Sectional Study Across Life Span
Authors: Nisha Kavassery Venkateswaran , Uppunda Ajith Kumar , Konadath Sreeraj 
Published: December 2022

Objective:
The primary aim of the research was to document spatial acuity changes across the life span using a battery of psychoacoustical and perceptual tests. The secondary aim was to identify the optimal metric for measuring spatial processing changes across the life span (ages 10–70 years).

Design and Study Sample:
A cross-sectional study comprising 115 participants with clinically normal hearing was conducted. Purposive sampling was adopted to recruit participants in the study, who were divided into six groups based on their chronological age.

Method:
Temporal, intensity, spectral, and composite correlates of spatial acuity were assessed using psychoacoustic measures and perceptual questionnaires. The temporal (interaural time difference [ITD]) and intensity correlates (interaural level difference [ILD]) of spatial perception were obtained using a MATLAB (v 2020a), whereas the composite correlate (virtual auditory space identification scores [VASIs]) and perceptual ratings of spatial processing were measured using Paradigm software and speech spatial and qualities in Kannada (SSQ-K).

Results:
Results across all tests (multivariate analyses variance: 6 age groups × 4 tests, followed by post hoc tests) consistently demonstrate poor ITD and ILD thresholds and overall lower spatial accuracy (VASI, SSQ-K) with increasing age. Discriminant function analyses (DFAs) revealed that VASI had a higher predictive power in capturing age-related changes in auditory spatial processing. The group segregation on spatial performance in DFA became evident after 50 years.

Conclusion:
This study provides evidence of gradual change in all three correlates of spatial processing, with statistically demonstrable deficits appearing from fourth decade of life on VASI and fifth decade of life on binaural processing.