bluuebunny/crossref_metadata_2025_split huggingface dataset:
Oncolytic Parapoxvirus induces Gasdermin E-mediated pyroptosis and activates antitumor immunity
Authors: Lin Jing , Sun Shihui , Zhao Kui , Gao Fei , Wang Renling , Li Qi , Zhou Yanlong , Zhang Jing , Li Yue , Wang Xinyue , Du Le , Wang Shuai , Li Zi , Lu Huijun , Lan Yungang , Song Deguang , Guo Wei , Chen Yujia , Gao Feng , Zhao Yicheng , Fan Rongrong , Guan Jiyu , He Wenqi 
Published: January 2023

AbstractThe advantage of oncolytic viruses (OV) in cancer therapy is their dual effect of directly killing tumours while prompting anti-tumour immune response. Oncolytic parapoxvirus ovis (ORFV) and other OVs are thought to induce apoptosis, but apoptosis, being the immunogenically inert compared to other types of cell death, does not explain the highly inflamed microenvironment in OV-challenged tumors. Here we show that ORFV and its recombinant therapeutic derivatives are able to trigger tumor cell pyroptosis via Gasdermin E (GSDME). This effect is especially prominent in GSDME-low tumor cells, in which ORFV-challenge pre-stabilizes GSDME by decreasing its ubiquitination and subsequently initiates pyroptosis. Consistently, GSDME depletion reduces the proportion of intratumoral cytotoxic T lymphocytes, pyroptotic cell death and the success of tumor ORFV virotherapy. In vivo, the OV preferentially accumulates in the tumour upon systemic delivery and elicits pyroptotic tumor killing. Consequentially, ORFV sensitizes immunologically ‘cold’ tumors to checkpoint blockade. This study thus highlights the critical role of GSDME-mediated pyroptosis in oncolytic ORFV-based antitumor immunity and identifies combinatorial cancer therapy strategies.
A self-standing three-dimensional covalent organic framework film
Authors: Yang Yizhou , Chen Yanyan , Izquierdo-Ruiz Fernando , Schäfer Clara , Rahm Martin , Börjesson Karl 
Published: January 2023

AbstractCovalent crystals such as diamonds are a class of fascinating materials that are challenging to fabricate in the form of thin films. This is because spatial kinetic control of bond formation is required to create covalently bonded crystal films. Directional crystal growth is commonly achieved by chemical vapor deposition, an approach that is hampered by technical complexity and associated high cost. Here we report on a liquid-liquid interfacial approach based on physical-organic considerations to synthesize an ultrathin covalent crystal film. By distributing reactants into separate phases using hydrophobicity, the chemical reaction is confined to an interface that orients the crystal growth. A molecular-smooth interface combined with in-plane isotropic conditions enables the synthesis of films on a centimeter size scale with a uniform thickness of 13 nm. The film exhibits considerable mechanical robustness enabling a free-standing length of 37 µm, as well as a clearly anisotropic chemical structure and crystal lattice alignment.
Moiré potential renormalization and ultra-flat bands induced by quasiparticle-plasmon coupling
Authors: Zhu Linghan , Wang Haonan , Yang Li 
Published: January 2023

AbstractMoiré potential profile can form flat electronic bands and manifest correlated states of electrons, where carrier doping is essential for observing those correlations. In this work, we uncover a hidden but remarkable many-electron effect: doped carriers form a two-dimensional plasmon and strongly couple with quasiparticles to renormalize moiré potential and realize ultra-flat bands. Using many-body perturbation theory, we demonstrate this effect in twisted MoS2/WS2 heterobilayer. The moiré potential is significantly enhanced upon carrier doping, and the bandwidth is reduced by order of magnitude, leading to drastic quenching of electronic kinetic energy and stronger correlation. We further predict that the competition between correlated mechanisms can be effectively controlled via doping, giving hope to a quantum transition between Mott and charge-transfer insulating states. Our work reveals that the potential renormalization effect of doping is much more significant in determining and controlling many-electron electronic correlations than sole filling-factor tuning in semiconducting moiré crystals.
The database for extracting numerical and visual properties of numerosity processing in the Chinese population
Authors: Cheng Dazhi , Cui Zhijun , Chen Chunhui , Xu Xin , Niu Kai , He Zhiqiang , Zhou Xinlin 
Published: January 2023

AbstractThe ability to handle non-symbolic numerosity has been recurrently linked to mathematical abilities. The accumulated data provide a rich resource that can reflect the underlying properties (i.e., dot ratio, area, convex hull, perimeters, distance, and hash) of numerosity processing. This article reports a database of numerosity processing in the Chinese population. The database contains five independent datasets with 7459, 4902, 415, 671, 414 participants respectively. For each dataset, all data were collected in the same online computerized test, examination room, professorial tester, and using the same protocols. Computational modeling method could be used to extract the dot ratio and visual properties of numerosity from five types of dot stimuli. This database enables researchers to test the theoretical hypotheses regarding numerosity processing using a large sample population. The database can also indicate the individual difference of non-symbolic numerosity in mathematical abilities.
Tailoring crosstalk between localized 1D spin-wave nanochannels using focused ion beams
Authors: Iurchuk Vadym , Pablo-Navarro Javier , Hula Tobias , Narkowicz Ryszard , Hlawacek Gregor , Körber Lukas , Kákay Attila , Schultheiss Helmut , Fassbender Jürgen , Lenz Kilian , Lindner Jürgen 
Published: January 2023

Abstract1D spin-wave conduits are envisioned as nanoscale components of magnonics-based logic and computing schemes for future generation electronics. À-la-carte methods of versatile control of the local magnetization dynamics in such nanochannels are highly desired for efficient steering of the spin waves in magnonic devices. Here, we present a study of localized dynamical modes in 1-$$\upmu$$
μ
m﻿-wide permalloy conduits probed by microresonator ferromagnetic resonance technique. We clearly observe the lowest-energy edge mode in the microstrip after its edges were finely trimmed by means of focused Ne$$^+$$

+

ion irradiation. Furthermore, after milling the microstrip along its long axis by focused ion beams, creating consecutively $$\sim$$
∼
50 and $$\sim$$
∼
100 nm gaps, additional resonances emerge and are attributed to modes localized at the inner edges of the separated strips. To visualize the mode distribution, spatially resolved Brillouin light scattering microscopy was used showing an excellent agreement with the ferromagnetic resonance data and confirming the mode localization at the outer/inner edges of the strips depending on the magnitude of the applied magnetic field. Micromagnetic simulations confirm that the lowest-energy modes are localized within $$\sim$$
∼
15-nm-wide regions at the edges of the strips and their frequencies can be tuned in a wide range (up to 5 GHz) by changing the magnetostatic coupling (i.e., spatial separation) between the microstrips.
SARS-CoV-2 infection augments species- and age-specific predispositions in cotton rats
Authors: Boukhvalova Marina S. , Mortensen Emma , Caple Jessica , Joseph John , Sylla Fatoumata , Kamali Arash , Stylos Daniel , Lopez Diego , March Thomas , Byrd Kevin Matthew , Prince Gregory A. , Arndt Ariel , Kajon Adriana , Blanco Jorge C. G. 
Published: January 2023

AbstractHeterogeneity of COVID-19 manifestations in human population is vast, for reasons unknown. Cotton rats are a clinically relevant small animal model of human respiratory viral infections. Here, we demonstrate for the first time that SARS-CoV-2 infection in cotton rats affects multiple organs and systems, targeting species- and age-specific biological processes. Infection of S. fulviventer, which developed a neutralizing antibody response and were more susceptible to SARS-CoV-2 replication in the upper respiratory tract, was accompanied by hyperplasia of lacrimal drainage-associated lymphoid tissue (LDALT), a first known report of mucosa-associated lymphoid tissue activation at the portal of SARS-CoV-2 entry. Although less permissive to viral replication, S. hispidus showed hyperplasia of bone marrow in the facial bones and increased pulmonary thrombosis in aged males. Augmentation of these features by SARS-CoV-2 infection suggests a virus-induced breach in regulatory mechanisms which could be devastating for people of all ages with underlying conditions and in particular for elderly with a multitude of ongoing disorders.
Optimizing variant-specific therapeutic SARS-CoV-2 decoys using deep-learning-guided molecular dynamics simulations
Authors: Köchl Katharina , Schopper Tobias , Durmaz Vedat , Parigger Lena , Singh Amit , Krassnigg Andreas , Cespugli Marco , Wu Wei , Yang Xiaoli , Zhang Yanchong , Wang Welson Wen-Shang , Selluski Crystal , Zhao Tiehan , Zhang Xin , Bai Caihong , Lin Leon , Hu Yuxiang , Xie Zhiwei , Zhang Zaihui , Yan Jun , Zatloukal Kurt , Gruber Karl , Steinkellner Georg , Gruber Christian C. 
Published: January 2023

AbstractTreatment of COVID-19 with a soluble version of ACE2 that binds to SARS-CoV-2 virions before they enter host cells is a promising approach, however it needs to be optimized and adapted to emerging viral variants. The computational workflow presented here consists of molecular dynamics simulations for spike RBD-hACE2 binding affinity assessments of multiple spike RBD/hACE2 variants and a novel convolutional neural network architecture working on pairs of voxelized force-fields for efficient search-space reduction. We identified hACE2-Fc K31W and multi-mutation variants as high-affinity candidates, which we validated in vitro with virus neutralization assays. We evaluated binding affinities of these ACE2 variants with the RBDs of Omicron BA.3, Omicron BA.4/BA.5, and Omicron BA.2.75 in silico. In addition, candidates produced in Nicotiana benthamiana, an expression organism for potential large-scale production, showed a 4.6-fold reduction in half-maximal inhibitory concentration (IC50) compared with the same variant produced in CHO cells and an almost six-fold IC50 reduction compared with wild-type hACE2-Fc.
Prevalence and factors associated with hepatitis C among pregnant women in China: a cross-sectional study
Authors: He Sun , Shuang Gao , Yinglan Wu , Lan Wang , Wei Wang , Ailing Wang , Changhe Wang , Xiaoyan Wang , Qun Gao , Zechun Lu , Dongxu Huang , Yu Wang , Han Mo Phoenix Kit , Zhongdan Chen , Chan Polin , Qian Wang 
Published: January 2023

AbstractPregnant women infected with HCV should be given attention due to their special physiological stage and the effect on offspring health. To examine the prevalence of HCV infection among pregnant women in part of China and explore relevant factors during pregnancy, a cross-sectional study was conducted in four maternal and children health care institutions (MCHC) in Guangdong, Hunan and Chongqing. Pregnant women who were delivered, induced or spontaneous abortion were included and relevant information was collected through the Hospital Information System. Results showed that the prevalence of HCV among pregnant women in four MCHCs was 0.11% (95% CI 0.09–0.13%). Age, occupations, regions, syphilis-infection, intrahepatic cholestasis of pregnancy (ICP), and placenta previa were significant factors (all P < 0.05). Age and syphilis-infection were positively correlated with HCV infection (Z = 3.41, P = 0.0006; OR = 18.16, 95% CI 9.34–35.29). HCV and HBV infection were risk factors of ICP (OR = 4.18, 95% CI 2.18–8.04; OR = 2.59, 95% CI 2.31–2.89). Our study indicates that the prevalence of HCV among pregnant women in the three provinces(city) was low compared with the general population in China. Older age and syphilis-infection increased the risk of HCV infection during pregnancy. HCV infection was a risk factor of ICP. Generally, we need keep a watchful eye on HCV infection and relevant factors mentioned above during pregnancy in clinic, especially those also infected with syphilis. HCV testing based on risk factors is recommended in antenatal care and obstetrics.
Enhanced phytoplankton bloom triggered by atmospheric high-pressure systems over the Northern Arabian Sea
Authors: Thoppil Prasad G. 
Published: January 2023

AbstractDuring winter, the dry, cool air brought by prevailing northeasterly trade winds leads to surface ocean heat loss and convective mixing in the northern Arabian Sea. The current paradigm is that the convective mixing process leads to the injection of nutrients up into the surface waters and exert a dominant control on winter productivity. By combining a variety of observations, atmospheric reanalysis and model simulations, we unraveled the processes responsible for the observed year-to-year chlorophyll-a variations in the northern Arabian Sea. Our findings suggest that the atmospheric high-pressure systems that traverse the northern Arabian Sea every winter and spring disrupt winter convective mixing and create an array of environmental conditions conducive to trigger phytoplankton blooms. The arrival of an atmospheric high with the anticyclonic flow in the northern Arabia Sea sets the stage for a sequence of events culminating in intermittent mixed-layer restratification due to buoyancy gain aided by increased specific humidity, supplemented with abundant sunlight due to clear skies, and suppressed turbulent mixing owing to weak winds. These combined with the mixed layer that is shallower than the euphotic zone and the influx of nutrients into the euphotic zone brought by convective mixing between the calm periods, caused unprecedented high concentrations of chlorophyll-a in the northern Arabian Sea.
Anticodon table of the chloroplast genome and identification of putative quadruplet anticodons in chloroplast tRNAs
Authors: Mohanta Tapan Kumar , Mohanta Yugal Kishore , Sharma Nanaocha 
Published: January 2023

AbstractThe chloroplast genome of 5959 species was analyzed to construct the anticodon table of the chloroplast genome. Analysis of the chloroplast transfer ribonucleic acid (tRNA) revealed the presence of a putative quadruplet anticodon containing tRNAs in the chloroplast genome. The tRNAs with putative quadruplet anticodons were UAUG, UGGG, AUAA, GCUA, and GUUA, where the GUUA anticodon putatively encoded tRNAAsn. The study also revealed the complete absence of tRNA genes containing ACU, CUG, GCG, CUC, CCC, and CGG anticodons in the chloroplast genome from the species studied so far. The chloroplast genome was also found to encode tRNAs encoding N-formylmethionine (fMet), Ile2, selenocysteine, and pyrrolysine. The chloroplast genomes of mycoparasitic and heterotrophic plants have had heavy losses of tRNA genes. Furthermore, the chloroplast genome was also found to encode putative spacer tRNA, tRNA fragments (tRFs), tRNA-derived, stress-induced RNA (tiRNAs), and the group I introns. An evolutionary analysis revealed that chloroplast tRNAs had evolved via multiple common ancestors and the GC% had more influence toward encoding the tRNA number in the chloroplast genome than the genome size.
Learned value modulates the access to visual awareness during continuous flash suppression
Authors: Lunghi Claudia , Pooresmaeili Arezoo 
Published: January 2023

AbstractMonetary value enhances visual perception and attention and boosts activity in the primary visual cortex, however, it is still unclear whether monetary value can modulate the conscious access to rewarding stimuli. Here we investigate this issue by employing a breaking continuous flash suppression (b-CFS) paradigm. We measured suppression durations of sinusoidal gratings having orthogonal orientations under CFS in adult volunteers before and after a short session of Pavlovian associative learning in which each orientation was arbitrarily associated either with high or low monetary reward. We found that monetary value accelerated the access to visual awareness during CFS. Specifically, after the associative learning, suppression durations of the visual stimulus associated with high monetary value were shorter compared to the visual stimulus associated with low monetary value. Critically, the effect was replicated in a second experiment using a detection task for b-CFS that was orthogonal to the reward associative learning. These results indicate that monetary reward facilitates the access to awareness of visual stimuli associated with monetary value probably by boosting their representation at the early stages of visual processing in the brain.
EEG-based spatio-temporal relation signatures for the diagnosis of depression and schizophrenia
Authors: Shor Oded , Yaniv-Rosenfeld Amit , Valevski Avi , Weizman Abraham , Khrennikov Andrei , Benninger Felix 
Published: January 2023

AbstractThe diagnosis of psychiatric disorders is currently based on a clinical and psychiatric examination (intake). Ancillary tests are used minimally or only to exclude other disorders. Here, we demonstrate a novel mathematical approach based on the field of p-adic numbers and using electroencephalograms (EEGs) to identify and differentiate patients with schizophrenia and depression from healthy controls. This novel approach examines spatio-temporal relations of single EEG electrode signals and characterizes the topological structure of these relations in the individual patient. Our results indicate that the relational topological structures, characterized by either the personal universal dendrographic hologram (DH) signature (PUDHS) or personal block DH signature (PBDHS), form a unique range for each group of patients, with impressive correspondence to the clinical condition. This newly developed approach results in an individual patient signature calculated from the spatio-temporal relations of EEG electrodes signals and might help the clinician with a new objective tool for the diagnosis of a multitude of psychiatric disorders.
Mid-Holocene expansion of the Indian Ocean warm pool documented in coral Sr/Ca records from Kenya
Authors: Leupold Maike , Pfeiffer Miriam , Watanabe Takaaki K. , Nakamura Nobuko , Reuning Lars , Blume Alina , McClanahan Tim , Mohammed Mchulla , Kiriama Herman , Garbe-Schönberg Dieter , Ritzrau Andrea Schröder , Zinke Jens 
Published: January 2023

AbstractProxy reconstructions suggest that mid-Holocene East African temperatures were warmer than today between 8 and 5 ka BP, but climate models cannot replicate this warming. Precessional forcing caused a shift of maximum insolation from boreal spring to fall in the mid-Holocene, which may have favored intense warming at the start of the warm season. Here, we use three Porites corals from Kenya that represent time windows from 6.55 to 5.87 ka BP to reconstruct past sea surface temperature (SST) seasonality from coral Sr/Ca ratios in the western Indian Ocean during the mid-Holocene. Although the Indian monsoon was reportedly stronger in the mid-Holocene, which should have amplified the seasonal cycle of SST in the western Indian Ocean, the corals suggest reduced seasonality (mean 3.2 °C) compared to the modern record (mean 4.3 °C). Warming in austral spring is followed by a prolonged period of warm SSTs, suggesting that an upper limit of tropical SSTs under mid-Holocene conditions was reached at the start of the warm season, and SSTs then remained stable. Similar changes are seen at the Seychelles. Bootstrap estimates suggest a reduction in SST seasonality of 1.3 ± 0.22 °C at Kenya and 1.7 ± 0.32 °C at the Seychelles. SST seasonality at Kenya corresponds to present-day SST seasonality at 55° E–60° E, while SST seasonality at the Seychelles corresponds to present day SST seasonality at ~ 65° E. This implies a significant westward expansion of the Indian Ocean warm pool. Furthermore, the coral data suggests that SST seasonality deviates from seasonal changes in orbital insolation due to ocean–atmosphere interactions.
Effect of date molasses on levetiracetam pharmacokinetics in healthy rats
Authors: Abu Dayyih Wael , Layth Raghad , Hailat Mohammad , Alkhawaja Bayan , Al Tamimi Lina , Zakaraya Zainab , Aburumman Aseel , Al Dmour Nisreen , Saadh Mohamed J. , Al-Matubsi Hisham , Aldalaen Saed M. 
Published: January 2023

AbstractTwelve healthy eight-week-old male Wistar rats weighing 200 g were used. Rats were chosen randomly, and their tails were identified and separated into cages/groups. The first group received an oral dose of 11.5 mg of levetiracetam in 5 mL of water, and the second group was given date syrup (250 g mixed with 250 mL water) for seven days, then 11.5 mg LEV in 5 mL water on day 7. One week of preadministered date molasses significantly decreased levetiracetam pharmacokinetic parameters in rats, such as Cmax (72 vs. 14 ng/mL, p = 0.01), Tmax (1.78 vs. 0.44 h, p < 0.001), and AUC (880 vs. 258 ng.h/mL, p < 0.001). This decrease in plasma levetiracetam levels caused by date molasses could be attributed to decreased levetiracetam absorption. On the other hand, the current study discovered that rats given date molasses for a week had a reduced rate and extent of absorption. As a result, date molasses might increase the risk of epileptic seizures in oral LEV-treated ones.
Super-resolving microscopy reveals the localizations and movement dynamics of stressosome proteins in Listeria monocytogenes
Authors: Tran Buu Minh , Linnik Dmitrii Sergeevich , Punter Christiaan Michiel , Śmigiel Wojciech Mikołaj , Mantovanelli Luca , Iyer Aditya , O’Byrne Conor , Abee Tjakko , Johansson Jörgen , Poolman Bert 
Published: January 2023

AbstractThe human pathogen Listeria monocytogenes can cope with severe environmental challenges, for which the high molecular weight stressosome complex acts as the sensing hub in a complicated signal transduction pathway. Here, we show the dynamics and functional roles of the stressosome protein RsbR1 and its paralogue, the blue-light receptor RsbL, using photo-activated localization microscopy combined with single-particle tracking and single-molecule displacement mapping and supported by physiological studies. In live cells, RsbR1 is present in multiple states: in protomers with RsbS, large clusters of stressosome complexes, and in connection with the plasma membrane via Prli42. RsbL diffuses freely in the cytoplasm but forms clusters upon exposure to light. The clustering of RsbL is independent of the presence of Prli42. Our work provides a comprehensive view of the spatial organization and intracellular dynamics of the stressosome proteins in L. monocytogenes, which paves the way towards uncovering the stress-sensing mechanism of this signal transduction pathway.