bluuebunny/crossref_metadata_2025_split huggingface dataset:
Bird diversity in the forests and coconut farms of Sulawesi, Indonesia
Authors: Winarni Nurul L. , Mitchell Simon L. , Anugra Bhisma G. , Deere Nicolas J. , Yordan Khaleb , Immanuel Boas , Zakaria Zuliyanto , Gaib Muhajir A.W. , Supriatna Jatna , Struebig Matthew J. 
Published: August 2023

AbstractCoconut farming contributes to the livelihoods of millions of people in tropical countries but is less frequently considered as a threat to biodiversity compared to other palm commodities such as oil palm. The expansion of coconut farming alongside other smallholder agriculture in Sulawesi, Indonesia, is of potential concern as the region is a centre of species endemism. We studied bird diversity and community structure in forests, coconut palm plantations and mixed farmland in Gorontalo Province, northern Sulawesi. Forest and non-forest sites supported similar numbers of species overall, but compared to agricultural areas, forest sites had communities that were more diverse and more even (i.e. different species were present at similar abundances). We found far fewer endemic species in agricultural areas compared to forests, and the communities in palm plantations and mixed farmland sites were dominated by generalist birds, with few indicator taxa. Nevertheless, there was a higher number of endemic species in coconut palm plantations than in mixed farmland sites. These findings mirror patterns of biotic homogenization documented elsewhere in the Wallacea centre of endemism, and imply that coconut palm plantations have comparable biodiversity value to other farmland systems. Increased protection of lowland forests and improved management of coconut farms could be important for supporting the conservation of the endemic birds of Sulawesi in the long term, but this warrants further study.
Ectoparasitic mites exert non-consumptive effects on the larvae of a fruit fly host
Authors: Horn Collin J. , Robinson Sarah , Tang Holly , Luong Lien T. 
Published: August 2023

AbstractThe mere presence of predators or parasites can negatively impact the fitness of prey or hosts. Exposure to predators during an organism's development can have deleterious effects on juvenile survival and the subsequent adult stage. Currently, it is unknown if parasites have analogous impacts on host larval stages and whether these effects carry over into other subsequent life stages. However, parasites may be exerting widespread yet underestimated non-consumptive effects (NCEs). We tested if Drosophila nigrospiracula larvae avoid pupating near mite cues (caged Macrocheles subbadius) in arena experiments, and measured the rate of pupation in arenas with mites and arenas without mites. Larvae disproportionately pupated on the side of arenas that lacked mite cues. Furthermore, fewer larvae successfully pupated in arenas containing mites cues compared to arenas without mite cues. We found that ectoparasitic mites exert NCEs on Drosophila larvae, even though the larval stage is not susceptible to infection. We discuss these results in the context of parasite impacts on host population growth in an infectious world.
Quelle folle aventure! Adjective positioning in native French and translated American TV shows and movies
Authors: Roadman Arielle 
Published: August 2023

AbstractThis paper analyzes adjective positioning in French through the lens of language contact. Though some adjectives are nearly always either before their noun (pre-nominal) or after (post-nominal), others – usually adjectives that depict a positive or negative value – can be found in either position without any detectable semantic change. Our aim is to investigate the possible influence of English on the positioning of these adjectives by using a corpus of native French TV media as well as media translated from English. The categorical pre-nominal pattern of English might be causing a higher rate of pre-nominal adjectives to be used in translated media in comparison to native media. Our findings indicate that the translated corpus shows a preference for pre-nominal adjectives compared to the native French corpus. It was also revealed that some adjectives seem more flexible in translated media. Thus, while French media prefer one position over the other for a specific adjective, the translated media will more easily place the same adjective on either side of the noun. Therefore, we conclude that language contact has a role to play in the positioning of adjectives in TV media in French.
The rudimentary embryo: an early angiosperm invention that contributed to their dominance over gymnosperms
Authors: Baskin Carol C. , Baskin Jerry M. 
Published: August 2023

AbstractIn this review, we explore the origin of the rudimentary embryo, its relationship to other kinds of plant embryos and its role in the diversification of angiosperms. Rudimentary embryos have a length:width ratio of ≤2.0, and they have organs, including cotyledon(s) and a primary root. A literature survey failed to reveal rudimentary embryos in the pre-angiosperms, suggesting that this kind of embryo is an angiosperm invention. Although proembryos of some gymnosperms and angiosperms have a length:width ratio of ≤2.0, they have not formed meristems or organs. Thus, rudimentary embryos are not proembryos. During the development of rudimentary embryos in monocots and dicots (all non-monocots), the growth pattern of the epicotyledonary cells differs, resulting in differences in the placement of the shoot meristem and in one versus two cotyledons, respectively, but the embryo size is similar. Rudimentary embryos grow inside the seed prior to germination, which is true for linear-underdeveloped embryos, including those in some gymnosperms. Rudimentary embryos served as the starting point for the great diversification of embryos, and ultimately of seeds, in angiosperms, and they are still present in many families of extant angiosperms. The rudimentary embryo is part of the syndrome of changes, including increased speed of pollen germination and pollen tube growth, simplification of the female gametophyte, development of endosperm and elimination of multiple embryo production from each zygote, that distinguish angiosperm seed production from that of gymnosperms. We conclude that the rudimentary embryo was one of many new developments of angiosperms that contributed to their great success on earth.
Associations between protein to non-protein ratio and intakes of other dietary components in a cohort aged 65–75 years: the Nutrition for Healthy Living Study
Authors: Luong Rebecca , Ribeiro Rosilene V , Hirani Vasant , Simpson Stephen J , Le Couteur David G , Raubenheimer David , Gosby Alison K 
Published: August 2023

AbstractObjective:Diets with a low proportion of energy from protein have shown to cause overconsumption of non-protein energy, known as Protein Leverage. Older adults are susceptible to nutritional inadequacy. The aim was to investigate associations between protein to non-protein ratio (P:NP) and intakes of dietary components and assess the nutritional adequacy of individuals aged 65–75 years from the Nutrition for Healthy Living (NHL) Study.Design:Cross-sectional. Nutritional intakes from seven-day weighed food records were compared with the Nutrient Reference Values for Australia and New Zealand, Australian Guide to Healthy Eating, Australian Dietary Guidelines and World Health Organisation Free Sugar Guidelines. Associations between P:NP and intakes of dietary components were assessed through linear regression analyses.Setting:NHL Study.Participants:113 participants.Results:Eighty-eight (59 female and 29 male) with plausible dietary data had a median (interquartile range) age of 69 years (67–71), high education level (86 %) and sources of income apart from the age pension (81 %). Substantial proportions had intakes below recommendations for dairy and alternatives (89 %), wholegrain (89 %) and simultaneously exceeded recommendations for discretionary foods (100 %) and saturated fat (92 %). In adjusted analyses, P:NP (per 1 % increment) was associated with lower intakes of energy, saturated fat, free sugar and discretionary foods and higher intakes of vitamin B12, Zn, meat and alternatives, red meat, poultry and wholegrain % (all P < 0·05).Conclusions:Higher P:NP was associated with lower intakes of energy, saturated fat, free sugar and discretionary. Our study revealed substantial nutritional inadequacy in this group of higher socio-economic individuals aged 65–75 years.
Echinochloa in mid-southern U.S. and California rice: What is known and what are the knowledge gaps?
Authors: Godar Amar S. , Norsworthy Jason K. 
Published: August 2023

AbstractSeveral species of Echinochloa P. Beauv., introduced at multiple events, have established themselves as a persistent concern for U.S. rice production. In this review, we highlight the key biological characteristics of economically relevant Echinochloa in U.S. rice production, revisit their historical trajectory, and suggest research directions for their management with special reference to barnyardgrass. Ecologically differentiated Echinochloa species have a distinct association with rice culture methods that have been practiced for the last few decades, barnyardgrass being historically predominant in drill-seeded rice in the mid-South, and early watergrass and late watergrass in water-seeded California rice. However, the emerging evidence challenges the dogma that other Echinochloa species for specific regions are of less importance. Primarily managed by the water-seeding method of rice culture in the early years of the 20th century, Echinochloa species have persisted in the sophisticated U.S. rice culture through the evolution of resistance to herbicides in recent decades. Accumulating knowledge, including those of recent genomic insights, suggests the rapid adaptability of Echinochloa. The last decade has seen a (re)emergence of nonchemical methods as a key component of sustainable management, among which use of harvest weed seed control (HWSC) methods and cover crops in the mid-South and stale-drill seeding in California are being considered as potential methods for managing Echinochloa. In recent years, furrow-irrigated rice has rapidly supplanted a significant proportion of conventionally flooded rice in the mid-South, whereas the propensity for compromised continuous submergence is increasing in California rice. On the cusp of this shift, the question at the forefront is how this will affect Echinochloa interference in rice and how this change will dictate the management efforts. Future research will lead to the development of a clear understanding of the impact of the changing agroecosystems on Echinochloa species and their response to the prospective integrated control interventions.
Sense of Purpose and Strategies for Coping with Anxiety Across Adulthood
Authors: Pfund Gabrielle N. , Strecher Victor , Kross Ethan , Hill Patrick L. 
Published: August 2023

Abstract: Sense of purpose – the feeling that one has meaningful goals and directions in life – has consistently been connected to desirable well-being outcomes. Though these associations are robust, only a paucity of research explains why this connection exists and whether it differs across the adult lifespan. In a large cross-sectional sample ( N = 1,666; age: M = 49.44, SD = 21.55), age showed a moderate positive association with sense of purpose and a large negative association with anxiety symptoms. Sense of purpose was negatively associated with anxiety and showed moderate to strong associations with how people regulate their emotions in anxiety-inducing situations. Sense of purpose had the strongest associations with adaptive emotion-regulation strategies connected to perspective broadening: When they feel anxious, people with a higher sense of purpose were more likely to find a silver lining, focus on the big picture, and remember that the stressor will not last. Furthermore, sense of purpose moderated the relationship between age and three maladaptive emotion-regulation strategies (eating/drinking to cope, expressive suppression, and distraction). In particular, higher levels of sense of purpose correlated with a stronger negative relationship between age and the use of these strategies. We discuss the findings regarding integrating the purpose and emotion-regulation literature.
Coupling of Carbon and Oxygen in the Pearl River Plume in Summer: Upwelling, Hypoxia, Reoxygenation and Enhanced Acidification
Authors: Guo Xianghui , Su Jianzhong , Guo Liguo , Liu Zhiqiang , Yang Wei , Li Yan , Yao Zhentong , Wang Lifang , Dai Minhan 
Published: August 2023

AbstractAcidification and hypoxia are universal environmental issues in coastal seas, especially in large river estuaries such as the Pearl River estuary. In July and August of 2015, two legs of a field survey were conducted in the Pearl River plume. Leg 1 was sampled during the influence of upwelling favorable winds, while Leg 2 was during downwelling favorable winds. During both legs, instead of the typically observed dissolved inorganic carbon (DIC) consumption and dissolved oxygen (DO) over‐saturation, upwelling‐induced high DIC (>2,000 μmol kg−1), low pH (7.7–7.8) and low DO (140–150 μmol kg−1) values were observed in surface waters at the estuary mouth and the area off Hong Kong. In the bottom waters, hypoxia, acidification (pH 7.6–7.8) and DIC accumulation (DIC addition of ∼100–180 μmol kg−1) were observed. Hypoxia was less severe during Leg 2 compared to Leg 1. The stoichiometry of oxygen depletion to DIC addition was 0.89 for bottom water, suggesting remineralization was dominated by marine sourced organic matter. However, a comparison of data from the two legs showed that the stoichiometry of oxygen consumption to DIC accumulation was significantly higher during Leg 2 (0.73 ± 0.03 for Leg 1 vs. 0.80 ± 0.05 for Leg 2), although N/P ratios were the same (13.54 ± 1.93 for Leg 1 vs. 13.51 ± 2.04 for Leg 2). This phenomenon was attributed mainly to enhanced ventilation (re‐oxygenation) under the influence of the downwelling favorable winds during Leg 2. Although ventilation relieves some hypoxia, it might enhance acidification in bottom waters after a short‐term ventilation event. The enhanced acidification after short‐term ventilation is worthy of further study considering that most hypoxia and acidification are found in shallow coastal seas.
The Impact of Soil Tension on Isotope Fractionation, Transport, and Interpretations of the Root Water Uptake Origin
Authors: Zhou Tiantian , Šimůnek Jiří , Nasta Paolo , Brunetti Giuseppe , Gaj Marcel , Neukum Christoph , Post Vincent 
Published: August 2023

AbstractThe new isotope module in HYDRUS‐1D can be used to infer the origin of root water uptake (RWU), a suitable dynamic indicator for agriculture and forest water management. However, evidence shows that the equilibrium fractionation between liquid water and water vapor within the soil is affected not only by soil temperature but also by soil tension. How soil tension affects isotope transport modeling and interpretations of the RWU origin is still unknown. In this study, we evaluated three fractionation scenarios on model performance for a field data set from Langeoog Island: (a) no fractionation (Non_Frac), (b) the soil temperature control on equilibrium fractionation as described by the standard Craig‐Gordon equation (CG_Frac), and (c) CG_Frac plus the soil tension control on equilibrium fractionation (CGT_Frac). The model simulations showed that CGT_Frac led to more depleted isotopic compositions of surface soil water than CG_Frac. The vertical origin of RWU was estimated using the water balance (WB) calculations and the Bayesian mixing model (SIAR). While the former directly used water flow outputs, the latter used as input simulated isotopic compositions (using different fractionation scenarios) of RWU and soil water. Both methods provided similar variation trends with time and depth in different soil layers' contributions to RWU. The contributions of all soil layers interpreted by the CGT_Frac scenario were always between Non_Frac and CG_Frac. The temporal origin of RWU was deduced from particle tracking (PT, releasing one hypothetical particle for individual precipitation event and tracking its movement based on the water balance between particles) and a virtual tracer experiment (VTE, assigning a known isotope composition to individual precipitation event and tracking its movement based on the cumulative isotope flux). Both methods revealed similar variation trends with time in drainage and root zone (RZ) travel times. The interpreted drainage and RZ travel times were generally ranked as Non_Frac > CGT_Frac > CG_Frac. Overall, the factors considered in the standard CG equation dominated isotope fractionation, transport, and interpretations of the RWU origin. Isotope transport‐based methods (SIAR, VTE) were more computationally demanding than water flow‐based methods (WB, PT).
De‐Tuning Albedo Parameters in a Coupled Climate Ice Sheet Model to Simulate the North American Ice Sheet at the Last Glacial Maximum
Authors: Gandy N. , Astfalck L. C. , Gregoire L. J. , Ivanovic R. F. , Patterson V. L. , Sherriff‐Tadano S. , Smith R. S. , Williamson D. , Rigby R. 
Published: August 2023

AbstractThe Last Glacial Maximum extent of the North American Ice Sheets is well constrained empirically but has proven to be challenging to simulate with coupled Climate‐Ice Sheet models. Coupled Climate‐Ice Sheet models are often too computationally expensive to sufficiently explore uncertainty in input parameters, and it is unlikely that values calibrated to reproduce modern ice sheets will reproduce the known extent of the ice at the Last Glacial Maximum. To address this, we run an ensemble with a coupled Climate‐Ice Sheet model (FAMOUS‐ice), simulating the final stages of growth of the last North American Ice Sheets' maximum extent. Using this large ensemble approach, we explore the influence of numerous uncertain ice sheet albedo, ice sheet dynamics, atmospheric, and oceanic parameters on the ice sheet extent. We find that ice sheet albedo parameters determine the majority of uncertainty when simulating the Last Glacial Maximum North American Ice Sheets. Importantly, different albedo parameters are needed to produce a good match to the Last Glacial Maximum North American Ice Sheets than have previously been used to model the contemporary Greenland Ice Sheet due to differences in cloud cover over ablation zones. Thus, calibrating coupled climate‐ice sheet models on one ice sheet may produce strong biases when the model is applied to a new domain.
Epigenetically upregulating TROP2 and SLFN11 enhances therapeutic efficacy of TROP2 antibody drug conjugate sacitizumab govitecan
Authors: Zhao Ming , DiPeri Timothy P. , Raso Maria Gabriela , Zheng Xiaofeng , Rizvi Yasmeen Qamar , Evans Kurt W. , Yang Fei , Akcakanat Argun , Roberto Estecio Marco , Tripathy Debu , Dumbrava Ecaterina E. , Damodaran Senthil , Meric-Bernstam Funda 
Published: August 2023

AbstractTROP2 antibody drug conjugates (ADCs) are under active development. We seek to determine whether we can enhance activity of TROP2 ADCs by increasing TROP2 expression. In metaplastic breast cancers (MpBC), there is limited expression of TROP2, and downregulating transcription factor ZEB1 upregulates E-cad and TROP2, thus sensitizing cancers to TROP2 ADC sacituzumab govitecan (SG). Demethylating agent decitabine decreases DNA methyltransferase expression and TROP2 promoter methylation and subsequently increases TROP2 expression. Decitabine treatment as well as overexpression of TROP2 significantly enhance SG antitumor activity. Decitabine also increases SLFN11, a biomarker of topoisomerase 1 inhibitor (TOP1) sensitivity and is synergistic with SG which has a TOP1 payload, in TROP2-expressing SLFN11-low BC cells. In conclusion, TROP2 and SLFN11 expression can be epigenetically modulated and the combination of demethylating agent decitabine with TROP2 ADCs may represent a novel therapeutic approach for tumors with low TROP2 or SLFN11 expression.
Proprioceptive disturbances in weightlessness revisited
Authors: Proske Uwe , Weber Bernhard M. 
Published: August 2023

AbstractThe senses of limb position and movement become degraded in low gravity. One explanation is a gravity-dependent loss of fusimotor activity. In low gravity, position and movement sense accuracy can be recovered if elastic bands are stretched across the joint. Recent studies using instrumented joysticks have confirmed that aiming and tracking accuracy can be recovered in weightlessness by changing viscous and elastic characteristics of the joystick. It has been proposed that the muscle spindle signal, responsible for generating position sense in the mid-range of joint movement, is combined with input from joint receptors near the limits of joint movement to generate a position signal that covers the full working range of the joint. Here it is hypothesised that in low gravity joint receptors become unresponsive because of the loss of forces acting on the joint capsule. This leads to a loss of position and movement sense which can be recovered by imposing elastic forces across the joint.
Effects of iron corrosion products on the degradation of bentonite structure and properties
Authors: Sun Yupeng , Zhou Yangtao , Wei Xin , Dong Junhua , Chen Nan , Ren Qiying , Wang Junhu , Ke Wei 
Published: August 2023

AbstractBentonite is a key material for engineering barriers to prevent groundwater and nuclide migration in the multi-barrier system of high-level radioactive waste (HLW) geological disposal. However, its barrier property will be degraded under the action of iron corrosion products of steel disposal containers. In this paper, the effects of iron corrosion products on the degradation of bentonite structure and properties were investigated in the simulated environments for HLW geological disposal. The results showed that Fe2+/Fe3+ dissolved from iron powder could enter montmorillonite (Mt) interlayer and substituted part of Na+, which caused the decrease of the volume and interlayer spacing of Mt, and the structural integrity of Mt was destroyed. Macroscopically, the water absorption and swelling property of bentonite were significantly decreased. The degradation mechanism of Mt structure was mainly that Fe2+/Fe3+ generated by iron corrosion entered the interlayer domain of Mt to compensate for the interlayer charge deficit.
A preliminary study of calcium channel-associated mRNA and miRNA networks in post-traumatic epileptic rats
Authors: Jia Xiao , Ma Yixun , Zhang Xiaoyuan , Shen Zefang , Wang Min , Jiang Lufang , Wei Xuan , Li Chang , Zhang Mengzhou , Yang Tiantong 
Published: August 2023

AbstractThe calcium channels are the main pathogenesis and therapeutic target for post-traumatic epilepsy (PTE). However, differentially expressed miRNAs (DEMs) and mRNAs associated with calcium channels in PTE and their interactions are poorly understood. We produced a PTE model in rats and conducted RNA-seq in PTE rats. Gene annotation was used to verify differentially expressed mRNAs related to calcium channels. RNAhybrid, PITA, and Miranda prediction were used to build the miRNA–mRNA pairs. Furthermore, Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were used for the functional enrichment analysis of DEMs. The quantification changes of mRNA and miRNA were verified by RT-qPCR. There were 431 identified differentially expressed genes (DEGs) in PTE rats compared with the sham group, of which five mRNAs and 7 miRNAs were related to calcium channels. The miRNA–mRNA network suggested a negative correlation between 11 pairs of miRNA–mRNA involved in the p53 signaling pathway, HIF-1 signaling pathway. RT-qPCR verified three upregulated mRNAs in PTE rats, associated with 7 DEMs negatively related to them, respectively. This study has revealed the changes in miRNA–mRNA pairs associated with calcium channels in PTE, which might contribute to the further interpretation of potential underlying molecular mechanisms of PTE and the discovery of promising diagnostics.