bluuebunny/crossref_metadata_2025_split huggingface dataset:
Salinity stress improves antioxidant potential by modulating physio-biochemical responses in Moringa oleifera Lam.
Authors: Azeem Muhammad , Pirjan Kulsoom , Qasim Muhammad , Mahmood Athar , Javed Talha , Muhammad Haji , Yang Shoujun , Dong Renjie , Ali Baber , Rahimi Mehdi 
Published: February 2023

AbstractMoringa oleiferaLam.is a common edible plant, famous for several nutritional and therapeutic benefits. This study investigates the salt -induced modulations in plant growth, physio-biochemical responses, and antioxidant performance ofM. oleiferagrown under 0, 50, and 100 mM NaCl concentrations. Results showed that the plant effectively managed moderate salinity (50 mM NaCl) by maintaining succulence, weight ratios, and biomass allocation patterns of both shoot and root with minimal reduction in dry biomass. However, high salinity (100 mM NaCl) remarkably declined all growth parameters. The plant accumulated more Na+and Cl−, while less K+under salinity as compared to the control. Consequently, osmotic potentials of both root and leaf decreased under salinity, which was corroborated by the high amount of proline and soluble sugars. Increased level of H2O2with significantly unchanged membrane fluidity indicating its role in perceiving and managing stress at moderate salinity. In addition, increased activities of superoxide dismutase, and catalase, with increased glutathione and flavonoid contents suggest an integrated participation of both enzymatic and non-enzymatic antioxidant components in regulating ROS. On the other hand, high salinity caused an outburst of ROS indicated by high H2O2, MDA, and electrolyte leakage. As a response, moringa drastically increased the activities of all antioxidant enzymes and contents of antioxidant molecules including ascorbic acid, glutathione, total phenols, and flavonoids with high radical scavenging and reducing power capacities. However, a considerable amount of energy was used in such management resulting in a significant growth reduction at 100 mM NaCl. This study suggests that moringa effectively resisted moderate salinity by modulating physio-biochemical attributes and effectively managing ion toxicity and oxidative stress. Salt stress also enhanced the medicinal potentials of moringa by increasing the contents of antioxidant compounds including ascorbic acid, glutathione, total phenols, and flavonoids and their resulting activities. It can be grown on degraded/ saline lands and biomass of this plant can be used for edible and medicinal purposes, besides providing other benefits in a global climate change scenario.
Mapping localization of 21 endogenous proteins in the Golgi apparatus of rodent neurons
Authors: van Bommel Danique M. , Toonen Ruud F. , Verhage Matthijs 
Published: February 2023

AbstractThe Golgi apparatus is the major sorting hub in the secretory pathway and particularly important for protein sorting in neurons. Knowledge about protein localization in Golgi compartments is largely based on work in cell lines. Here, we systematically compared protein localization of 21 endogenous proteins in the Golgi apparatus of mouse neurons using confocal microscopy and line scan analysis. We localized these proteins by measuring the distance relative to the canonical TGN marker TGN38. Based on this, proteins fell into three groups: upstream of, overlapping with or downstream of TGN38. Seven proteins showed complete overlap with TGN38, while proteins downstream of TGN38 were located at varying distances from TGN38. Proteins upstream of TGN38 were localized in between TGN38 and the cis-/medial Golgi markers Giantin and GM130. This localization was consistent with protein function. Our data provide an overview of the relative localization of endogenous proteins in the Golgi of primary mouse neurons.
Human collecting lymphatic glycocalyx identification by electron microscopy and immunohistochemistry
Authors: Gianesini S. , Rimondi E. , Raffetto J. D. , Melloni E. , Pellati A. , Menegatti E. , Avruscio G. P. , Bassetto F. , Costa A. L. , Rockson S. 
Published: February 2023

AbstractBlood flow is translated into biochemical inflammatory or anti-inflammatory signals based onshear stress type, by means of sensitive endothelial receptors. Recognition of the phenomenon is of paramount importance for enhanced insights into the pathophysiological processes of vascular remodeling. The endothelial glycocalyx is a pericellular matrix, identified in both arteries and veins, acting collectively as a sensor responsive to blood flow changes. Venous and lymphatic physiology is interconnected; however, to our knowledge, a lymphatic glycocalyx structure has never been identified in humans. The objective of this investigation is to identify glycocalyx structures from ex vivo lymphatic human samples. Lower limb vein and lymphatic vessels were harvested. The samples were analyzed by transmission electron microscopy. The specimens were also examined by immunohistochemistry. Transmission electron microscopy identified a glycocalyx structure in human venous and lymphatic samples. Immunohistochemistry for podoplanin, glypican-1, mucin-2, agrin and brevican characterized lymphatic and venous glycocalyx-like structures. To our knowledge, the present work reports the first identification of a glycocalyx-like structure in human lymphatic tissue. The vasculoprotective action of the glycocalyx could become an investigational target in the lymphatic system as well, with clinical implications for the many patients affected by lymphatic disorders.
Mechanical properties and biocompatibility of a novel miniscrew made of Zr70Ni16Cu6Al8 bulk metallic glass for orthodontic anchorage
Authors: Sasaki Shutaro , Seiryu Masahiro , Ida Hiroto , Miyashita Shunro , Takeshita Nobuo , Irie Daiki , Yokoyama Yoshihiko , Takano-Yamamoto Teruko 
Published: February 2023

AbstractThe purpose of the present study was to fabricate a miniscrew possible for clinical application using Zr70Ni16Cu6Al8bulk metallic glass (BMG), which has high mechanical strength, low elastic modulus, and high biocompatibility. First, the elastic moduli of Zr-based metallic glass rods made of Zr55Ni5Cu30Al10, Zr60Ni10Cu20Al10, Zr65Ni10Cu17.5Al7.5, Zr68Ni12Cu12Al8, and Zr70Ni16Cu6Al8were measured. Zr70Ni16Cu6Al8had the lowest elastic modulus among them. Then, we fabricated Zr70Ni16Cu6Al8BMG miniscrews with diameters from 0.9 to 1.3 mm, conducted a torsion test, and implanted them into the alveolar bone of beagle dogs to compare insertion torque, removal torque, Periotest, new bone formation around the miniscrew, and failure rate compared with 1.3 mm diameter Ti-6Al-4 V miniscrew. The Zr70Ni16Cu6Al8BMG miniscrew exhibited a high torsion torque even if the miniscrew had a small diameter. Zr70Ni16Cu6Al8BMG miniscrews with a diameter of 1.1 mm or less had higher stability and lower failure rate than 1.3 mm diameter Ti-6Al-4 V miniscrews. Furthermore, the smaller diameter Zr70Ni16Cu6Al8BMG miniscrew was shown, for the first time, to have a higher success rate and to form more new bone around the miniscrew. These findings suggested the usefulness of our novel small miniscrew made of Zr70Ni16Cu6Al8BMG for orthodontic anchorage.
Early detection of anthropogenic climate change signals in the ocean interior
Authors: Tjiputra Jerry F. , Negrel Jean , Olsen Are 
Published: February 2023

AbstractRobust detection of anthropogenic climate change is crucial to: (i) improve our understanding of Earth system responses to external forcing, (ii) reduce uncertainty in future climate projections, and (iii) develop efficient mitigation and adaptation plans. Here, we use Earth system model projections to establish the detection timescales of anthropogenic signals in the global ocean through analyzing temperature, salinity, oxygen, and pH evolution from surface to 2000 m depths. For most variables, anthropogenic changes emerge earlier in the interior ocean than at the surface, due to the lower background variability at depth. Acidification is detectable earliest, followed by warming and oxygen changes in the subsurface tropical Atlantic. Temperature and salinity changes in the subsurface tropical and subtropical North Atlantic are shown to be early indicators for a slowdown of the Atlantic Meridional Overturning Circulation. Even under mitigated scenarios, inner ocean anthropogenic signals are projected to emerge within the next few decades. This is because they originate from existing surface changes that are now propagating into the interior. In addition to the tropical Atlantic, our study calls for establishment of long-term interior monitoring systems in the Southern Ocean and North Atlantic in order to elucidate how spatially heterogeneous anthropogenic signals propagate into the interior and impact marine ecosystems and biogeochemistry.
Joint estimation of relaxation and diffusion tissue parameters for prostate cancer with relaxation-VERDICT MRI
Authors: Palombo Marco , Valindria Vanya , Singh Saurabh , Chiou Eleni , Giganti Francesco , Pye Hayley , Whitaker Hayley C. , Atkinson David , Punwani Shonit , Alexander Daniel C. , Panagiotaki Eleftheria 
Published: February 2023

AbstractThis work presents a biophysical model of diffusion and relaxation MRI for prostate called relaxation vascular, extracellular and restricted diffusion for cytometry in tumours (rVERDICT). The model includes compartment-specific relaxation effects providing T1/T2 estimates and microstructural parameters unbiased by relaxation properties of the tissue. 44 men with suspected prostate cancer (PCa) underwent multiparametric MRI (mp-MRI) and VERDICT-MRI followed by targeted biopsy. We estimate joint diffusion and relaxation prostate tissue parameters with rVERDICT using deep neural networks for fast fitting. We tested the feasibility of rVERDICT estimates for Gleason grade discrimination and compared with classic VERDICT and the apparent diffusion coefficient (ADC) from mp-MRI. The rVERDICT intracellular volume fraction fic discriminated between Gleason 3 + 3 and 3 + 4 (p = 0.003) and Gleason 3 + 4 and ≥ 4 + 3 (p = 0.040), outperforming classic VERDICT and the ADC from mp-MRI. To evaluate the relaxation estimates we compare against independent multi-TE acquisitions, showing that the rVERDICT T2 values are not significantly different from those estimated with the independent multi-TE acquisition (p > 0.05). Also, rVERDICT parameters exhibited high repeatability when rescanning five patients (R2 = 0.79–0.98; CV = 1–7%; ICC = 92–98%). The rVERDICT model allows for accurate, fast and repeatable estimation of diffusion and relaxation properties of PCa sensitive enough to discriminate Gleason grades 3 + 3, 3 + 4 and ≥ 4 + 3.
Metasurfaces of capacitively loaded metallic rings for magnetic resonance imaging surface coils
Authors: Freire Manuel J. 
Published: February 2023

AbstractThis work investigates the use of a metasurface made up of a two-dimensional array of capacitively loaded metallic rings to enhance the signal-to-noise ratio of magnetic resonance imaging surface coils and to tailor the magnetic near-field radio frequency pattern of the coils. It is found that the signal-to-noise ratio is increased if the coupling between the capacitively loaded metallic rings in the array is increased. The input resistance and the radiofrequency magnetic field of the metasurface loaded coil are numerically analyzed by means of an efficient algorithm termed the discrete model to determine the signal-to-noise ratio. Standing surface waves or magnetoinductive waves supported by the metasurface introduce resonances in the frequency dependence of the input resistance. The signal-to-noise ratio is found to be optimal at the frequency corresponding to a local minimum existing between these resonances.The discrete model is used in an optimization procedure to fit the structural parameters of a metasurface to enhance the signal-to-noise ratio at the frequency corresponding to this local minimum in the input resistance. It is found that the signal-to-noise ratio can be greatly improved if the mutual coupling between the capacitively loaded metallic rings of the array is made stronger by bringing them closer or by using rings of squared shape instead of circular. These conclusions derived from the numerical results provided by the discrete model are double-checked by means of numerical simulations provided by the commercial electromagnetic solver Simulia CST and by experimental results. Numerical results provided by CST are also shown to demonstrate that the surface impedance of the array of elements can be adjusted to provide a more homogeneous magnetic near-field radio frequency pattern that ultimately leads to a more uniform magnetic resonance image at a desired slice. This is achieved by preventing the reflection of propagating magnetoinductive waves at the edges of the array by matching the elements arranged at the edges of the array with capacitors of suitable value.
The influence of astrocytic leaflet motility on ionic signalling and homeostasis at active synapses
Authors: Toman Marinus , Wade John Joseph , Verkhratsky Alexei , Dallas Mark , Bithell Angela , Flanagan Bronac , Harkin Jim , McDaid Liam 
Published: February 2023

AbstractAstrocytes display a highly complex, spongiform morphology, with their fine terminal processes (leaflets) exercising dynamic degrees of synaptic coverage, from touching and surrounding the synapse to being retracted from the synaptic region. In this paper, a computational model is used to reveal the effect of the astrocyte-synapse spatial relationship on ionic homeostasis. Specifically, our model predicts that varying degrees of astrocyte leaflet coverage influences concentrations of K+, Na+ and Ca2+, and results show that leaflet motility strongly influences Ca2+ uptake, as well as glutamate and K+ to a lesser extent. Furthermore, this paper highlights that an astrocytic leaflet that is in proximity to the synaptic cleft loses the ability to form a Ca2+ microdomain, whereas when the leaflet is remote from the synaptic cleft, a Ca2+ microdomain can form. This may have implications for Ca2+-dependent leaflet motility.
Strategies for single-shot discrimination of process matrices
Authors: Lewandowska Paulina , Pawela Łukasz , Puchała Zbigniew 
Published: February 2023

AbstractThe topic of causality has recently gained traction quantum information research. This work examines the problem of single-shot discrimination between process matrices which are an universal method defining a causal structure. We provide an exact expression for the optimal probability of correct distinction. In addition, we present an alternative way to achieve this expression by using the convex cone structure theory. We also express the discrimination task as semidefinite programming. Due to that, we have created the SDP calculating the distance between process matrices and we quantify it in terms of the trace norm. As a valuable by-product, the program finds an optimal realization of the discrimination task. We also find two classes of process matrices which can be distinguished perfectly. Our main result, however, is a consideration of the discrimination task for process matrices corresponding to quantum combs. We study which strategy, adaptive or non-signalling, should be used during the discrimination task. We proved that no matter which strategy you choose, the probability of distinguishing two process matrices being a quantum comb is the same.
The symmetry in the model of two coupled Kerr oscillators leads to simultaneous multi-photon transitions
Authors: Nikitchuk Bogdan Y. , Anikin Evgeny V. , Maslova Natalya S. , Gippius Nikolay A. 
Published: February 2023

AbstractWe consider the model of two coupled oscillators with Kerr nonlinearities in the rotating-wave approximation. We demonstrate that for a certain set of parameters of the model, the multi-photon transitions occur between many pairs of the oscillator states simultaneously. Also, the position of the multi-photon resonances does not depend on the coupling strength between two oscillators. We prove rigorously that this is a consequence of a certain symmetry of the perturbation theory series for the model. In addition, we analyse the model in the quasi-classical limit by considering the dynamics of the pseudo-angular momentum. We identify the multi-photon transitions with the tunnelling transitions between the degenerate classical trajectories on the Bloch sphere.
The magnetic field strength and the force distance dependency of the magnetically controlled growing rods used for early onset scoliosis
Authors: Diekhöner Lars , Meyer Charlotte Sommer , Eiskjær Søren 
Published: February 2023

AbstractMagnetically controlled growing rods (MCGR’s) have revolutionized the treatment of early-onset scoliosis (EOS) because painless lengthenings can be done in the outpatient clinic without anesthesia. Untreated EOS leads to respiratory insufficiency and reduced life expectancy. However, MCGR’s have inherent complications like non-functioning of the lengthening mechanism. We quantify an important failure mechanism and give advice on how to avoid this complication. The magnetic field strength was measured on new/explanted rods at different distances between the external remote controller and the MCGR and likewise in patients before/after distractions. The magnetic field strength of the internal actuator decayed fast with increasing distances and plateaued at 25–30 mm approximating zero. Two new and 12 explanted MCGRs was used for the lab measurements of the elicited force using a forcemeter. At a distance of 25 mm, the force was reduced to approximately 40% (ca. 100 N) compared to zero distance (ca. 250 N), most so for explanted rods. This is used to point out the importance of minimizing the implantation depth to ensure proper functionality of the rod lengthening in clinical use for EOS patients. A distance of 25 mm from skin to MCGR should be considered a relative contraindication to clinical use in EOS patients.
Nusinersen mitigates neuroinflammation in severe spinal muscular atrophy patients
Authors: Nuzzo Tommaso , Russo Rosita , Errico Francesco , D’Amico Adele , Tewelde Awet G. , Valletta Mariangela , Hassan Amber , Tosi Michele , Panicucci Chiara , Bruno Claudio , Bertini Enrico , Chambery Angela , Pellizzoni Livio , Usiello Alessandro 
Published: February 2023

Abstract
Background
Neuroinflammation contributes to the onset and progression of neurodegenerative diseases, but has not been specifically investigated in patients affected by severe and milder forms of spinal muscular atrophy (SMA).

Methods
In this two-center retrospective study, we investigated signatures of neuroinflammation in forty-eight pediatric male and female SMA1 (n = 18), male and female SMA2 (n = 19), and female SMA3 (n = 11) patients, as well as in a limited number of male and female non-neurological control subjects (n = 4). We employed a Bio-Plex multiplex system based on xMAP technology and performed targeted quantitative analysis of a wide range of pro- and anti-inflammatory cytokines (chemokines, interferons, interleukins, lymphokines and tumor necrosis factors) and neurotrophic factors in the cerebrospinal fluid (CSF) of the study cohort before and after Nusinersen treatment at loading and maintenance stages.

Results
We find a significant increase in the levels of several pro-inflammatory cytokines (IL-6, IFN-γ, TNF-α, IL-2, IL-8, IL-12, IL-17, MIP-1α, MCP-1, and Eotaxin) and neurotrophic factors (PDGF-BB and VEGF) in the CSF of SMA1 patients relative to SMA2 and SMA3 individuals, who display levels in the range of controls. We also find that treatment with Nusinersen significantly reduces the CSF levels of some but not all of these neuroinflammatory molecules in SMA1 patients. Conversely, Nusinersen increases the CSF levels of proinflammatory G-CSF, IL-8, MCP-1, MIP-1α, and MIP-1β in SMA2 patients and decreases those of anti-inflammatory IL-1ra in SMA3 patients.

Conclusions
These findings highlight signatures of neuroinflammation that are specifically associated with severe SMA and the neuro-immunomodulatory effects of Nusinersen therapy.
Cross-talk between energy and redox metabolism in astrocyte-neuron functional cooperation
Authors: Almeida Angeles , Jimenez-Blasco Daniel , Bolaños Juan P. 
Published: February 2023

Abstract
Astrocytes show unique anatomical, morphological, and metabolic features to take up substrates from the blood and metabolize them for local delivery to active synapses to sustain neuron function. In the present review, we specifically focus on key molecular aspects of energy and redox metabolism that facilitate this astrocyte-neuronal coupling in a controlled manner. Basal glycolysis is co-ordinated by the anaphase-promoting complex/cyclosome (APC/C)-Cdh1, a ubiquitin ligase that targets the proglycolytic enzyme 6-phosphofructokinase-2,6-bisphosphastate-3 (PFKFB3) for degradation. APC/C-Cdh1 activity is more robust in neurons than in astrocytes, which determine that PFKFB3 abundance and glycolytic rate are weaker in neurons. The low PFKFB3 activity in neurons facilitates glucose-6-phosphate oxidation via the pentose-phosphate pathway, which promotes antioxidant protection. Conversely, the high PFKFB3 activity in astrocytes allows the production and release of glycolytic lactate, which is taken up by neurons that use it as an oxidizable substrate. Importantly, the mitochondrial respiratory chain is tighter assembled in neurons than in astrocytes, thus the bioenergetic efficiency of mitochondria is higher in neurons. Because of this, the production of reactive oxygen species (mROS) by mitochondrial complex I is very low in neurons and very high in astrocytes. Such a naturally occurring high abundance of mROS in astrocytes physiologically determines a specific transcriptional fingerprint that contributes to sustaining cognitive performance. We conclude that the energy and redox metabolism of astrocytes must complementarily match that of neurons to regulate brain function and animal welfare.
Mass spectrometry of intact membrane proteins: shifting towards a more native-like context
Authors: Oluwole Abraham , Shutin Denis , Bolla Jani R. 
Published: February 2023

Abstract
Integral membrane proteins are involved in a plethora of biological processes including cellular signalling, molecular transport, and catalysis. Many of these functions are mediated by non-covalent interactions with other proteins, substrates, metabolites, and surrounding lipids. Uncovering such interactions and deciphering their effect on protein activity is essential for understanding the regulatory mechanisms underlying integral membrane protein function. However, the detection of such dynamic complexes has proven to be challenging using traditional approaches in structural biology. Native mass spectrometry has emerged as a powerful technique for the structural characterisation of membrane proteins and their complexes, enabling the detection and identification of protein-binding partners. In this review, we discuss recent native mass spectrometry-based studies that have characterised non-covalent interactions of membrane proteins in the presence of detergents or membrane mimetics. We additionally highlight recent progress towards the study of membrane proteins within native membranes and provide our perspective on how these could be combined with recent developments in instrumentation to investigate increasingly complex biomolecular systems.