bluuebunny/crossref_metadata_2025_split huggingface dataset:
Global transmission suitability maps for dengue virus transmitted by Aedes aegypti from 1981 to 2019
Authors: Nakase Taishi , Giovanetti Marta , Obolski Uri , Lourenço José 
Published: May 2023

AbstractMosquito-borne viruses increasingly threaten human populations due to accelerating changes in climate, human and mosquito migration, and land use practices. Over the last three decades, the global distribution of dengue has rapidly expanded, causing detrimental health and economic problems in many areas of the world. To develop effective disease control measures and plan for future epidemics, there is an urgent need to map the current and future transmission potential of dengue across both endemic and emerging areas. Expanding and applying Index P, a previously developed mosquito-borne viral suitability measure, we map the global climate-driven transmission potential of dengue virus transmitted by Aedes aegypti mosquitoes from 1981 to 2019. This database of dengue transmission suitability maps and an R package for Index P estimations are offered to the public health community as resources towards the identification of past, current and future transmission hotspots. These resources and the studies they facilitate can contribute to the planning of disease control and prevention strategies, especially in areas where surveillance is unreliable or non-existent.
Discovery of two new isoforms of the human DUT gene
Authors: Rácz Gergely Attila , Nagy Nikolett , Várady György , Tóvári József , Apáti Ágota , Vértessy Beáta G. 
Published: May 2023

AbstractIn human cells two dUTPase isoforms have been described: one nuclear (DUT-N) and one mitochondrial (DUT-M), with cognate localization signals. In contrast, here we identified two additional isoforms; DUT-3 without any localization signal and DUT-4 with the same nuclear localization signal as DUT-N. Based on an RT-qPCR method for simultaneous isoform-specific quantification we analysed the relative expression patterns in 20 human cell lines of highly different origins. We found that the DUT-N isoform is expressed by far at the highest level, followed by the DUT-M and the DUT-3 isoform. A strong correlation between expression levels of DUT-M and DUT-3 suggests that these two isoforms may share the same promoter. We analysed the effect of serum starvation on the expression of dUTPase isoforms compared to non-treated cells and found that the mRNA levels of DUT-N decreased in A-549 and MDA-MB-231 cells, but not in HeLa cells. Surprisingly, upon serum starvation DUT-M and DUT-3 showed a significant increase in the expression, while the expression level of the DUT-4 isoform did not show any changes. Taken together our results indicate that the cellular dUTPase supply may also be provided in the cytoplasm and starvation stress induced expression changes are cell line dependent.
A smart approach to EMG envelope extraction and powerful denoising for human–machine interfaces
Authors: Esposito Daniele , Centracchio Jessica , Bifulco Paolo , Andreozzi Emilio 
Published: May 2023

AbstractElectromyography (EMG) is widely used in human–machine interfaces (HMIs) to measure muscle contraction by computing the EMG envelope. However, EMG is largely affected by powerline interference and motion artifacts. Boards that directly provide EMG envelope, without denoising the raw signal, are often unreliable and hinder HMIs performance. Sophisticated filtering provides high performance but is not viable when power and computational resources must be optimized. This study investigates the application of feed-forward comb (FFC) filters to remove both powerline interferences and motion artifacts from raw EMG. FFC filter and EMG envelope extractor can be implemented without computing any multiplication. This approach is particularly suitable for very low-cost, low-power platforms. The performance of the FFC filter was first demonstrated offline by corrupting clean EMG signals with powerline noise and motion artifacts. The correlation coefficients of the filtered signals envelopes and the true envelopes were greater than 0.98 and 0.94 for EMG corrupted by powerline noise and motion artifacts, respectively. Further tests on real, highly noisy EMG signals confirmed these achievements. Finally, the real-time operation of the proposed approach was successfully tested by implementation on a simple Arduino Uno board.
Polarity signaling balances epithelial contractility and mechanical resistance
Authors: Rübsam Matthias , Püllen Robin , Tellkamp Frederik , Bianco Alessandra , Peskoller Marc , Bloch Wilhelm , Green Kathleen J. , Merkel Rudolf , Hoffmann Bernd , Wickström Sara A. , Niessen Carien M. 
Published: May 2023

AbstractEpithelia maintain a functional barrier during tissue turnover while facing varying mechanical stress. This maintenance requires both dynamic cell rearrangements driven by actomyosin-linked intercellular adherens junctions and ability to adapt to and resist extrinsic mechanical forces enabled by keratin filament-linked desmosomes. How these two systems crosstalk to coordinate cellular movement and mechanical resilience is not known. Here we show that in stratifying epithelia the polarity protein aPKCλ controls the reorganization from stress fibers to cortical actomyosin during differentiation and upward movement of cells. Without aPKC, stress fibers are retained resulting in increased contractile prestress. This aberrant stress is counterbalanced by reorganization and bundling of keratins, thereby increasing mechanical resilience. Inhibiting contractility in aPKCλ−/− cells restores normal cortical keratin networks but also normalizes resilience. Consistently, increasing contractile stress is sufficient to induce keratin bundling and enhance resilience, mimicking aPKC loss. In conclusion, our data indicate that keratins sense the contractile stress state of stratified epithelia and balance increased contractility by mounting a protective response to maintain tissue integrity.
Consensus clustering methodology to improve molecular stratification of non-small cell lung cancer
Authors: Manganaro L. , Bianco S. , Bironzo P. , Cipollini F. , Colombi D. , Corà D. , Corti G. , Doronzo G. , Errico L. , Falco P. , Gandolfi L. , Guerrera F. , Monica V. , Novello S. , Papotti M. , Parab S. , Pittaro A. , Primo L. , Righi L. , Sabbatini G. , Sandri A. , Vattakunnel S. , Bussolino F. , Scagliotti G.V. 
Published: May 2023

AbstractRecent advances in machine learning research, combined with the reduced sequencing costs enabled by modern next-generation sequencing, paved the way to the implementation of precision medicine through routine multi-omics molecular profiling of tumours. Thus, there is an emerging need of reliable models exploiting such data to retrieve clinically useful information. Here, we introduce an original consensus clustering approach, overcoming the intrinsic instability of common clustering methods based on molecular data. This approach is applied to the case of non-small cell lung cancer (NSCLC), integrating data of an ongoing clinical study (PROMOLE) with those made available by The Cancer Genome Atlas, to define a molecular-based stratification of the patients beyond, but still preserving, histological subtyping. The resulting subgroups are biologically characterized by well-defined mutational and gene-expression profiles and are significantly related to disease-free survival (DFS). Interestingly, it was observed that (1) cluster B, characterized by a short DFS, is enriched in KEAP1 and SKP2 mutations, that makes it an ideal candidate for further studies with inhibitors, and (2) over- and under-representation of inflammation and immune systems pathways in squamous-cell carcinomas subgroups could be potentially exploited to stratify patients treated with immunotherapy.
Prediction of mammalian tissue-specific CLOCK–BMAL1 binding to E-box DNA motifs
Authors: Marri Daniel , Filipovic David , Kana Omar , Tischkau Shelley , Bhattacharya Sudin 
Published: May 2023

AbstractThe Brain and Muscle ARNTL-Like 1 protein (BMAL1) forms a heterodimer with either Circadian Locomotor Output Cycles Kaput (CLOCK) or Neuronal PAS domain protein 2 (NPAS2) to act as a master regulator of the mammalian circadian clock gene network. The dimer binds to E-box gene regulatory elements on DNA, activating downstream transcription of clock genes. Identification of transcription factor binding sites and genomic features that correlate to DNA binding by BMAL1 is a challenging problem, given that CLOCK–BMAL1 or NPAS2–BMAL1 bind to several distinct binding motifs (CANNTG) on DNA. Using three different types of tissue-specific machine learning models with features based on (1) DNA sequence, (2) DNA sequence plus DNA shape, and (3) DNA sequence and shape plus histone modifications, we developed an interpretable predictive model of genome-wide BMAL1 binding to E-box motifs and dissected the mechanisms underlying BMAL1–DNA binding. Our results indicated that histone modifications, the local shape of the DNA, and the flanking sequence of the E-box motif are sufficient predictive features for BMAL1–DNA binding. Our models also provide mechanistic insights into tissue specificity of DNA binding by BMAL1.
A novel HIV model through fractional enlarged integral and differential operators
Authors: Barakat M. A. , Hyder Abd-Allah , Almoneef Areej A. 
Published: May 2023

AbstractThis article presents a novel mathematical fractional model to examine the transmission of HIV. The new HIV model is built using recently fractional enlarged differential and integral operators. The existence and uniqueness findings for the suggested fractional HIV model are investigated using Leray–Schauder nonlinear alternative (LSNA) and Banach’s fixed point (BFP) theorems. Furthermore, multiple types of Ulam stability (U-S) are created for the fractional model of HIV. It is straightforward to identify that the gained findings may be decreased to many results obtained in former works of literature.
Design of infrared optical absorber using silver nanorings array made by a top-down process
Authors: Bouanane I. , Bedu F. , Ozerov I. , Sciacca B. , Santinacci L. , Duché D. , Berginc G. , Escoubas L. , Margeat O. , Le Rouzo J. 
Published: May 2023

AbstractThis paper presents the numerical simulation and fabrication of a metasurface composed of silver nanorings with a split-ring gap. These nanostructures can exhibit optically-induced magnetic responses with unique possibilities to control absorption at optical frequencies. The absorption coefficient of the silver nanoring was optimized by performing a parametric study with Finite Difference Time Domain (FDTD) simulations. The absorption and scattering cross sections of the nanostructures are numerically calculated to assess the impact of the inner and outer radii, the thickness and the split-ring gap of one nanoring, as well as the periodicity factor for a group of four nanorings. This showed full control on resonance peaks and absorption enhancement in the near infrared spectral range. The experimental fabrication of this metasurface made of an array of silver nanorings is achieved by e-beam lithography and metallization. Optical characterizations are then carried out and compared to the numerical simulations. In contrast to usual microwave split-ring resonator metasurfaces reported in literature, the present study shows both the realization by a top-down process and modelling performed in the infrared frequency range.
Changes in perceived peripersonal space following the rubber hand illusion
Authors: Smit M. , Dijkerman H. C. , Kurstjens V. , de Haan A. M. , van der Ham I. J. M. , van der Smagt M. J. 
Published: May 2023

AbstractPeripersonal space (PPS), the region immediately surrounding the body is essential for bodily protection and goal directed action. Previous studies have suggested that the PPS is anchored to one’s own body and in the current study we investigated whether the PPS could be modulated by changes in perceived body ownership. While theoretically important, this anchoring can also have implications for patients with altered body perception. The rubber hand illusion (RHI) is a way to manipulate body ownership. We hypothesized that after induction of a left hand RHI, the perceived space around the body shifts to the right. Sixty-five participants performed a landmark task before and after a left hand RHI. In the landmark task, participants had to determine whether a vertical landmark line was left or right from the center of a horizontal screen. One group of the participants was exposed to synchronous stroking, the other group experienced asynchronous stroking. Results showed a shift in space to the right (e.g. away from the own arm), but only for the ‘synchronous stroking’ group. These results suggest that the relevant action space becomes linked to the fake hand. Critically, subjective ownership experience did not correlate with this shift, but proprioceptive drift did. This suggests that multisensory integration of bodily information drives this shift in space around the body and not feelings of ownership.
A novel of WS2–MoCuO3 supported with graphene quantum dot as counter electrode for dye-sensitized solar cells application
Authors: Areerob Yonrapach , Oh Won-Chun , Hamontree Chaowalit , Nachaithong Theeranuch , Nijpanich Supinya , Pattarith Kongsak 
Published: May 2023

AbstractA novel tungsten disulfide-molybdenum copper oxide composite supported with graphene quantum dots (WM@GQDs) has been synthesized as a counter electrode (CE) for dye-sensitized solar cells (DSSCs) using a simple and low-cost ultrasonication method. The unique structure of WM@GQDs exhibits excellent power conversion efficiency due to its high catalytic activity and charge transport properties. In addition, the graphene quantum dots (GQDs) provide more active sites in the zero-dimensional materials for an I/I3− redox reaction which can improve the electrical and optical properties of the composite. The results indicate that the amount of GQDs in the composite affect the effectiveness of solar devices. When 0.9%wt of GQDs was used, the WM@GQDs composite achieved an efficiency of 10.38%, which is higher than that of the expensive platinum CE under the same conditions. The mechanism behind the improved power conversion efficiency (PCE) of the composite sample is also discussed in detail. Therefore, WM@GQDs can be an efficient material to replace platinum in DSSCs as a CE.
Impaired health-related quality of life in long-COVID syndrome after mild to moderate COVID-19
Authors: Malesevic Stefan , Sievi Noriane A. , Baumgartner Patrick , Roser Katharina , Sommer Grit , Schmidt Dörthe , Vallelian Florence , Jelcic Ilijas , Clarenbach Christian F. , Kohler Malcolm 
Published: May 2023

AbstractA growing number of patients with SARS-CoV-2 infections experience long-lasting symptoms. Even patients who suffered from a mild acute infection show a variety of persisting and debilitating neurocognitive, respiratory, or cardiac symptoms (Long-Covid syndrome), consequently leading to limitations in everyday life. Because data on health-related quality of life (HRQoL) is scarce, we aimed to characterize the impact of Long-Covid symptoms after a mild or moderate acute infection on HRQoL. In this observational study, outpatients seeking counseling in the interdisciplinary Post-Covid consultation of the University Hospital Zurich with symptoms persisting for more than 4 weeks were included. Patients who received an alternative diagnosis or suffered from a severe acute Covid-19 infection were excluded. St. George’s Respiratory Questionnaire (SGRQ), Euroquol-5D-5L (EQ-5D-5L), and the Short form 36 (SF-36) were distributed to assess HRQoL. 112 patients were included, 86 (76.8%) were female, median (IQR) age was 43 (32.0, 52.5) years with 126 (91, 180) days of symptoms. Patients suffered frequently from fatigue (81%), concentration difficulties (60%), and dyspnea (60%). Patients mostly stated impairment in performing usual activities and having pain/discomfort or anxiety out of the EQ-5D-5L. EQ index value and SGRQ activity score component were significantly lower in females. SF-36 scores showed remarkably lower scores in the physical health domain compared to the Swiss general population before and during the COVID-19 pandemic. Long-Covid syndrome has a substantial impact on HRQoL. Long-term surveillance of patients must provide clarity on the duration of impairments in physical and mental health.Trial registration: The study is registered on www.ClinicalTrials.gov, NCT04793269.
Millisecond flash lamp curing for porosity generation in thin films
Authors: Attallah Ahmed G. , Prucnal Slawomir , Buttering Maik , Hirschmann Eric , Koehler Nicole , Schulz Stefan E. , Wagner Andreas , Liedke Maciej O. 
Published: May 2023

AbstractFlash lamp annealing (FLA) with millisecond pulse durations is reported as a novel curing method for pore precursor's degradation in thin films. A case study on the curing of dielectric thin films is presented. FLA-cured films are being investigated by means of positron annihilation spectroscopy (PAS) and Fourier-transform infrared (FTIR) spectroscopy in order to quantify the nm-scale porosity and post-treatment chemistry, respectively. Results from positron annihilation reveal the onset of the formation of porous voids inside the samples at 6 ms flash treatment time. Moreover, parameter's adjustment (flash duration and energy density) allows for identifying the optimum conditions of effective curing. Within such a systematic investigation, positron results indicate that FLA is able to decompose the porogen (pore precursors) and to generate interconnected (open porosity) or isolated pore networks with self-sealed pores in a controllable way. Furthermore, FTIR results demonstrate the structural evolution after FLA, that help for setting the optimal annealing conditions whereby only a residual amount of porogen remains and at the same time a well-densified matrix, and a hydrophobic porous structures are created. Raman spectroscopy suggests that the curing-induced self-sealing layer developed at the film surface is a graphene oxide-like layer, which could serve as the outside sealing of the pore network from intrusions.
Radiomics models based on multisequence MRI for predicting PD-1/PD-L1 expression in hepatocellular carcinoma
Authors: Gong Xue-Qin , Liu Ning , Tao Yun-Yun , Li Li , Li Zu-Mao , Yang Lin , Zhang Xiao-Ming 
Published: May 2023

AbstractThe purpose of this study was to explore the effectiveness of radiomics based on multisequence MRI in predicting the expression of PD-1/PD-L1 in hepatocellular carcinoma (HCC). One hundred and eight patients with HCC who underwent contrast-enhanced MRI 2 weeks before surgical resection were enrolled in this retrospective study. Corresponding paraffin sections were collected for immunohistochemistry to detect the expression of PD-1 and PD-L1. All patients were randomly divided into a training cohort and a validation cohort at a ratio of 7:3. Univariate and multivariate analyses were used to select potential clinical characteristics related to PD-1 and PD-L1 expression. Radiomics features were extracted from the axial fat-suppression T2-weighted imaging (FS-T2WI) images and the arterial phase and portal venous phase images from the axial dynamic contrast-enhanced MRI, and the corresponding feature sets were generated. The least absolute shrinkage and selection operator (LASSO) was used to select the optimal radiomics features for analysis. Logistic regression analysis was performed to construct single-sequence and multisequence radiomics and radiomic-clinical models. The predictive performance was judged by the area under the receiver operating characteristic curve (AUC) in the training and validation cohorts. In the whole cohort, PD-1 expression was positive in 43 patients, and PD-L1 expression was positive in 34 patients. The presence of satellite nodules served as an independent predictor of PD-L1 expression. The AUC values of the FS-T2WI, arterial phase, portal venous phase and multisequence models in predicting the expression of PD-1 were 0.696, 0.843, 0.863, and 0.946 in the training group and 0.669, 0.792, 0.800 and 0.815 in the validation group, respectively. The AUC values of the FS-T2WI, arterial phase, portal venous phase, multisequence and radiomic-clinical models in predicting PD-L1 expression were 0.731, 0.800, 0.800, 0.831 and 0.898 in the training group and 0.621, 0.743, 0.771, 0.810 and 0.779 in the validation group, respectively. The combined models showed better predictive performance. The results of this study suggest that a radiomics model based on multisequence MRI has the potential to predict the preoperative expression of PD-1 and PD-L1 in HCC, which could become an imaging biomarker for immune checkpoint inhibitor (ICI)-based treatment.
Slow advancement of the endotracheal tube during fiberoptic-guided tracheal intubation reduces the severity of postoperative sore throat
Authors: Kim Hyunjee , Kim Jeong Eon , Kim Yeongun , Hong Seong Wook , Jung Hoon 
Published: May 2023

AbstractAlthough fiberoptic-guided tracheal intubation is a gentler method than using a direct laryngoscope, injury may occur owing to impingement between the distal edge of the endotracheal tube and the glottis. This study aimed to investigate the effects of endotracheal tube advancement speed during fiberoptic-guided intubation on airway symptoms postoperatively. We randomized patients scheduled for laparoscopic gynecological surgery to either Group C or S. When advancing the tube over the bronchoscope, the operator advanced the tube at a normal speed in Group C and at a slower speed in Group S. The speed in Group S was approximately half that in Group C. The target outcomes were the severity of postoperative sore throat, hoarseness, and cough. Patients in Group C experienced a more severe sore throat than those in Group S at 3 and 24 h postoperatively (p = 0.001 and p = 0.012, respectively). However, the severity of hoarseness and cough postoperatively were not significantly different between the groups. In conclusion, the slow advancement of the endotracheal tube during fiberoptic-guided intubation can reduce sore throat severity.
Behavioral and oscillatory signatures of switch costs in highly proficient bilinguals
Authors: Timofeeva Polina , Quiñones Ileana , Geng Shuang , de Bruin Angela , Carreiras Manuel , Amoruso Lucia 
Published: May 2023

AbstractBilinguals with a high proficiency in their first (L1) and second language (L2) often show comparable reaction times when switching from their L1 to L2 and vice-versa (“symmetrical switch costs”). However, the neurophysiological signatures supporting this effect are not well understood. Here, we ran two separate experiments and assessed behavioral and MEG responses in highly proficient Spanish-Basque bilinguals while they overtly name pictures in a mixed-language context. In the behavioral experiment, bilinguals were slower when naming items in switch relative to non-switch trials, and this switch cost was comparable for both languages (symmetrical). The MEG experiment mimicked the behavioral one, with switch trials showing more desynchronization than non-switch trials across languages (symmetric neural cost) in the alpha band (8–13 Hz). Source-localization revealed the engagement of right parietal and premotor areas, which have been linked to language selection and inhibitory control; and of the left anterior temporal lobe (ATL), a cross-linguistic region housing conceptual knowledge that generalizes across languages. Our results suggest that highly proficient bilinguals implement a language-independent mechanism, supported by alpha oscillations, which is involved in cue-based language selection and facilitates conceptually-driven lexical access in the ATL, possibly by inhibiting non-target lexical items or disinhibiting target ones.