bluuebunny/crossref_metadata_2025_split huggingface dataset:
West Antarctic Ice Sheet Dynamics in the Amundsen Sea Sector since the Late Miocene—Tying IODP Expedition 379 Results to Seismic Data
Authors: Gille-Petzoldt Johanna , Gohl Karsten , Uenzelmann-Neben Gabriele , Grützner Jens , Klages Johann P. ,   IODP Expedition 379 Scientists
Published: December 2022

Observations of rapid ongoing grounding line retreat, ice shelf thinning and accelerated ice flow from the West Antarctic Ice Sheet (WAIS) may forebode a possible collapse if global temperatures continue to increase. Understanding and reconstructing West Antarctic Ice Sheet dynamics in past warmer-than-present times will inform about its behavior as an analogue for future climate scenarios. International Ocean Discovery Program (IODP) Expedition 379 visited the Amundsen Sea sector of Antarctica to obtain geological records suitable for this purpose. During the expedition, cores from two drill sites at the Resolution Drift on the continental rise returned sediments whose deposition was possibly influenced by West Antarctic Ice Sheet dynamics from late Miocene to Holocene times. To examine the West Antarctic Ice Sheet dynamics, shipboard physical properties and sedimentological data are correlated with seismic data and extrapolated across the Resolution Drift via core-log-seismic integration. An interval with strongly variable physical properties, high diatom abundance and ice-rafted debris occurrence, correlating with partially high amplitude seismic reflection characteristics was identified between 4.2 and 3.2 Ma. Sedimentation during this interval is interpreted as having occurred during an extended warm period with a dynamic West Antarctic Ice Sheet in the Amundsen Sea sector. These records compare to those of other drill sites in the Ross Sea and the Bellingshausen Sea, and thus suggest an almost simultaneous occurrence of extended warm periods in all three locations.
Comparison of characteristics between Chinese diabetes mellitus-induced erectile dysfunction populations and non-diabetes mellitus-induced erectile dysfunction populations: A cross-sectional study
Authors: Peng Jingxuan , Li Dongjie , Liu Longyun , Xiang Yali , Tang Yuxin 
Published: December 2022

BackgroundErectile dysfunction (ED) is a common disease in adult men, and diabetes is an independent risk factor for ED. However, there are few reports on the distinction between diabetes mellitus-induced erectile dysfunction (DMED) and non-DMED features, as well as ED features of varying severity in the two groups.MethodsA total of 365 ED patients treated at two clinics in China from 2019 to 2022 were included. Questionnaires of the International Index of Erectile Function (IIEF-5), Erectile Hardness Score (EHS), Premature Ejaculation Diagnostic Tool (PEDT), Patient Health Questionnaire-9 (PHQ-9), and Generalized Anxiety Disorder-7 (GAD-7) were administered to the patients. They were divided into three groups according to the IIEF-5 score: 5-7 for severe ED, 8-11 for moderate ED, and 12-21 for mild ED. In addition, the patient’s age, weight, height, fasting blood glucose (FBG), total cholesterol (TC), triglycerides (TG), follicle-stimulating hormone (FSH), luteinizing hormone (LH), prolactin (PRL), total testosterone (TT) and other indicators were also collected. Statistical analysis was performed using SPSS 26, comparing all parameters between groups.ResultsAge (P&lt;0.001), height (P=0.009), body mass index (BMI) (P=0.002), PEDT (P&lt;0.001), FBG (P&lt;0.001), FSH (P&lt;0.001), TG (P&lt;0.001), TT (P&lt;0.001) and triglyceride-glucose index (TyG) (P&lt;0.001) were significantly different between diabetic ED and nondiabetic ED subjects. The trend test in the nondiabetic ED population found a negative correlation between the IIEF-5 score and PHQ-9 (P for trend=0.15). Multivariate ordinal logistic regression in the diabetic ED population showed that elevated LH OR=11.37 (95% CI: 0.966, 3.897) and elevated PRL OR=4.10 (95% CI: 0.410, 2.411) were associated with an increased risk of more severe ED.ConclusionsThe aetiology, demographic parameters, degree of premature ejaculation, and related biochemical tests were significantly different between the DMED and non-DMED populations.
Classical and alternate complement factor overexpression in non-obese weight matched women with polycystic ovary syndrome does not correlate with vitamin D
Authors: Moin Abu Saleh Md , Sathyapalan Thozhukat , Butler Alexandra E. , Atkin Stephen L. 
Published: December 2022

IntroductionWomen with polycystic ovary syndrome (PCOS) exhibit complement factor expression changes that may be obesity-driven rather than an intrinsic facet of PCOS; furthermore, complement changes have been associated with vitamin D deficiency, a common feature of PCOS. Therefore, complement pathway proteins and vitamin D levels may be linked in PCOS.MethodsWe measured plasma levels of complement pathway proteins by Slow Off-rate Modified Aptamer (SOMA)-scan plasma protein measurement for the classical (C4, C4a, and C4b) and alternative pathways (C3, C3b, iC3b, properdin, and factors B, D, and H) in weight and age-matched non-obese non-insulin resistant women with PCOS (n = 24) and control women (n = 24). Proteins that differed between groups were correlated with 25-hydroxyvitamin D3 (25(OH)D3) and 1,25-dihydroxyvitamin D3 (1,25(OH)2D3), measured by isotope-dilution liquid chromatography tandem mass spectrometry.ResultsWomen with PCOS had a higher free androgen index and anti-Mullerian hormone, though insulin resistance was comparable to controls; likewise, C-reactive protein, a marker of inflammation, was comparable between cohorts. In the alternative complement pathway, C3, iC3b, and properdin were increased in PCOS (p &lt;0.05), while C4 in the classical pathway was increased (p &lt;0.05). 25(OH)D3 levels positively correlated with C3b only in control subjects, with no correlation of 1,25(OH)2D3 with any of the proteins.ConclusionIn a non-obese PCOS population matched for age, insulin resistance and inflammation, initiating proteins of the classical and alternate complement cascades were increased. However, a positive correlation with 25(OH)D3 was only seen for C3b in control subjects, with no correlation to 1,25(OH)2D3, suggesting that the increase in complement proteins in PCOS is vitamin D-independent.
Determinants of long COVID among adults hospitalized for SARS-CoV-2 infection: A prospective cohort study
Authors: Bellan Mattia , Apostolo Daria , Albè Alice , Crevola Martina , Errica Nicolò , Ratano Giacomo , Tonello Stelvio , Minisini Rosalba , D’Onghia Davide , Baricich Alessio , Patrucco Filippo , Zeppegno Patrizia , Gramaglia Carla , Balbo Piero Emilio , Cappellano Giuseppe , Casella Sara , Chiocchetti Annalisa , Clivati Elisa , Giordano Mara , Manfredi Marcello , Patti Giuseppe , Pinato David James , Puricelli Chiara , Raineri Davide , Rolla Roberta , Sainaghi Pier Paolo , Pirisi Mario ,   the No-More COVID study group
Published: December 2022

RationaleFactors associated with long-term sequelae emerging after the acute phase of COVID-19 (so called “long COVID”) are unclear. Here, we aimed to identify risk factors for the development of COVID-19 sequelae in a prospective cohort of subjects hospitalized for SARS-CoV-2 infection and followed up one year after discharge.MethodsA total of 324 subjects underwent a comprehensive and multidisciplinary evaluation one year after hospital discharge for COVID-19. A subgroup of 247/324 who consented to donate a blood sample were tested for a panel of circulating cytokines.ResultsIn 122 patients (37.8%) there was evidence of at least one persisting physical symptom. After correcting for comorbidities and COVID-19 severity, the risk of developing long COVID was lower in the 109 subjects admitted to the hospital in the third wave of the pandemic than in the 215 admitted during the first wave, (OR 0.69, 95%CI 0.51-0.93, p=0.01). Univariable analysis revealed female sex, diffusing capacity of the lungs for carbon monoxide (DLCO) value, body mass index, anxiety and depressive symptoms to be positively associated with COVID-19 sequelae at 1 year. Following logistic regression analysis, DLCO was the only independent predictor of residual symptoms (OR 0.98 CI 95% (0.96-0.99), p=0.01). In the subgroup of subjects with normal DLCO (&gt; 80%), for whom residual lung damage was an unlikely explanation for long COVID, the presence of anxiety and depressive symptoms was significantly associated to persistent symptoms, together with increased levels of a set of pro-inflammatory cytokines: interferon-gamma, tumor necrosis factor-alpha, interleukin (IL)-2, IL-12, IL-1β, IL-17. In logistic regression analysis, depressive symptoms (p=0.02, OR 4.57 [1.21-17.21]) and IL-12 levels (p=0.03, OR 1.06 [1.00-1.11]) 1-year after hospital discharge were independently associated with persistence of symptoms.ConclusionsLong COVID appears mainly related to respiratory sequelae, prevalently observed during the first pandemic wave. Among patients with little or no residual lung damage, a cytokine pattern consistent with systemic inflammation is in place.
Methotrexate inhibition of SARS-CoV-2 entry, infection and inflammation revealed by bioinformatics approach and a hamster model
Authors: Chen Yun-Ti , Chang Yu-Hsiu , Pathak Nikhil , Tzou Shey-Cherng , Luo Yong-Chun , Hsu Yen-Chao , Li Tian-Neng , Lee Jung-Yu , Chen Yi-Cyun , Huang Yu-Wei , Yang Hsin-Ju , Hsu Nung-Yu , Tsai Hui-Ping , Chang Tein-Yao , Hsu Shu-Chen , Liu Ping-Cheng , Chin Yuan-Fan , Lin Wen-Chin , Yang Chuen-Mi , Wu Hsueh-Ling , Lee Chia-Ying , Hsu Hui-Ling , Liu Yi-Chun , Chu Jhih-Wei , Wang Lily Hui-Ching , Wang Jann-Yuan , Huang Chih-Heng , Lin Chi-Hung , Hsieh Po-Shiuan , Wu Lee Yan-Hwa , Hung Yi-Jen , Yang Jinn-Moon 
Published: December 2022

BackgroundDrug repurposing is a fast and effective way to develop drugs for an emerging disease such as COVID-19. The main challenges of effective drug repurposing are the discoveries of the right therapeutic targets and the right drugs for combating the disease.MethodsHere, we present a systematic repurposing approach, combining Homopharma and hierarchal systems biology networks (HiSBiN), to predict 327 therapeutic targets and 21,233 drug-target interactions of 1,592 FDA drugs for COVID-19. Among these multi-target drugs, eight candidates (along with pimozide and valsartan) were tested and methotrexate was identified to affect 14 therapeutic targets suppressing SARS-CoV-2 entry, viral replication, and COVID-19 pathologies. Through the use of in vitro (EC50 = 0.4 μM) and in vivo models, we show that methotrexate is able to inhibit COVID-19 via multiple mechanisms.ResultsOur in vitro studies illustrate that methotrexate can suppress SARS-CoV-2 entry and replication by targeting furin and DHFR of the host, respectively. Additionally, methotrexate inhibits all four SARS-CoV-2 variants of concern. In a Syrian hamster model for COVID-19, methotrexate reduced virus replication, inflammation in the infected lungs. By analysis of transcriptomic analysis of collected samples from hamster lung, we uncovered that neutrophil infiltration and the pathways of innate immune response, adaptive immune response and thrombosis are modulated in the treated animals.ConclusionsWe demonstrate that this systematic repurposing approach is potentially useful to identify pharmaceutical targets, multi-target drugs and regulated pathways for a complex disease. Our findings indicate that methotrexate is established as a promising drug against SARS-CoV-2 variants and can be used to treat lung damage and inflammation in COVID-19, warranting future evaluation in clinical trials.
Pan-cancer analysis of ASB3 and the potential clinical implications for immune microenvironment of glioblastoma multiforme
Authors: Mu Long , Han Zhibin , Yu Shengkun , Wang Aowen , Chen Dongjiang , Kong Sijia , Gu Yifei , Xu Lin , Liu Axiang , Sun Ruohan , Long Yu 
Published: December 2022

BackgroundAnkyrin repeat and SOCS Box containing 3 (ASB3) is an E3 ubiquitin ligase. It has been reported to regulate the progression of some cancers, but no systematic pan-cancer analysis has been conducted to explore its function in prognosis and immune microenvironment.MethodIn this study, mRNA expression data were downloaded from TCGA and GTEx database. Next generation sequencing data from 14 glioblastoma multiforme (GBM) samples by neurosurgical resection were used as validation dataset. Multiple bioinformatics methods (ssGSEA, Kaplan-Meier, Cox regression analysis, GSEA and online tools) were applied to explore ASB3 expression, gene activity, prognosis of patients in various cancers, and its correlation with clinical information, immune microenvironment and pertinent signal pathways in GBM. The biological function of ASB3 in tumor-infiltrating lymphocytes (TILs) was verified using an animal model.ResultsWe found that ASB3 was aberrant expressed in a variety of tumors, especially in GBM, and significantly correlated with the prognosis of cancer patients. The level of ASB3 was related to the TMB, MSI and immune cell infiltration in some cancer types. ASB3 had a negative association with immune infiltration and TME, including regulatory T cells (Tregs), cancer-associated fibroblasts, immunosuppressors and related signaling pathways in GBM. ASB3 overexpression reduced the proportion of Tregs in TILs. GSEA and PPI analysis also showed negative correlation between ASB3 expression and oncogenetic signaling pathways in GBM.ConclusionA comprehensive pan-cancer analysis of ASB3 showed its potential function as a biomarker of cancer prognosis and effective prediction of immunotherapy response. This study not only enriches the understanding of the biological function of ASB3 in pan-cancer, especially in GBM immunity, but also provides a new reference for the personalized immunotherapy of GBM.
Effects of sea ice retreat and ocean warming on the Laptev Sea continental slope ecosystem (1993 vs 2012)
Authors: Bienhold Christina , Schourup-Kristensen Vibe , Krumpen Thomas , Nöthig Eva-Maria , Wenzhöfer Frank , Korhonen Meri , Vredenborg Myriel , Hehemann Laura , Boetius Antje 
Published: December 2022

The central Arctic Ocean is rapidly changing due to amplified warming and sea ice retreat. Nonetheless, it remains challenging to document and decipher impacts on key ecosystem processes such as primary production and pelagic-benthic coupling, due to limited observations in this remote area. Here we investigated environmental changes at the Laptev Sea continental slope (60-3400 m water depth) from the surface to the seafloor, by replicating sample transects two decades apart. Mean break-up of sea ice occurred earlier and mean freeze-up occurred later in 2012 compared to 1993, extending the ice-free period by more than 30 days. On average, observations and model results showed an annual increase in primary production of 30% and more in the study area in 2012. In contrast, calculated and modelled fluxes of particulate organic carbon (POC) to the seafloor were only slightly higher in 2012 and did not extend as far into the deep Laptev Sea as the increase in primary production, possibly due to a more developed retention system. Nevertheless, benthic surveys revealed a substantial increase in phytodetritus availability at the seafloor along the entire transect from the shelf edge to the deep sea. This calls for carbon input by lateral advection from the shelves, additional input from sea ice, and/or a late summer bloom. We also investigated the composition and activity of bacterial communities at the seafloor and potential linkages to the observed environmental changes. While bacterial abundance, biomass and overall community structure showed no systematic differences between the two contrasting years at all depths, extracellular enzymatic activities had increased as a result of higher food availability. This was partly reflected in higher benthic oxygen uptake, indicating a moderate impact on benthic remineralization rates at the time of sampling. Our results show considerable effects of ocean warming and sea ice loss on the ecosystem from the surface ocean to the seafloor in the Laptev Sea, which are likely to continue in the coming decades.
Reduced salinity exacerbates the viral infection on the coccolithophorid Emiliania huxleyi at elevated pCO2
Authors: Fu Qianqian , Gao Kunshan 
Published: December 2022

The blooms of coccolithophores are usually terminated by their viruses. However, little has been documented on the interplay between the host with virus under different environmental conditions. We investigated the relationship of Emiliania huxleyi (BOF92) and its virus (EhV99B1) after the coccolithophorid had acclimated to different levels of salinity (S35: 35‰; S25: 25‰) and CO2 (AC: 400 μatm; HC: 1000 μatm) for about 15 generations. Our results showed that the virus infection decreased the growth of E. huxleyi along with decreased photochemical efficiency and photosynthetic carbon fixation under all the combinations of the treatments. Lowered salinity exacerbated the impacts of the viral infection on the growth and photosynthetic performance of E. huxley. The elevated pCO2 appeared to have alleviated the impacts of the viral infection on its photosynthetic performance with enhanced levels of Fv/Fm, by about 49% under S35 and by about 16% under S25, respectively. Nevertheless, the elevated pCO2 enhanced the virus burst size by about 18% under the high and by about 46% under the low levels of salinity, respectively. It is concluded that reduced salinity under the elevated pCO2 exacerbates the impact of the virus on E. huxleyi, leading to the highest burst sizes and the lowest photosynthetic carbon fixation, and the enhanced photochemical efficiency and increased levels of Chl a under the elevated pCO2 could have facilitated the energy supply for the virus multiplication in the infected cells of E. huxleyi.
Effect of prehospital transportation on 24-h fluid volume, a post hoc analysis of a multicenter, prospective, observational study on fluid volumes in patients with suspected infection
Authors: Jensen Marie Egebjerg , Kølsen-Petersen Jens Aage , Kirkegaard Hans , Jessen Marie Kristine 
Published: December 2022

IntroductionInfections, including sepsis, are leading causes of death and fluid administration is part of the treatment. The optimal fluid therapy remains controversial. If the patient is transported by Emergency Medical Services (EMS), fluids can be initiated during transportation, which may result in increased overall fluid administration and fluid overload, which may be harmful. The aim of the study was to investigate the effect of EMS transportation on 24-h fluid administration in patients with suspected infection.MethodsThis is a post hoc study of a prospective, multicenter, observational study, conducted in three Danish Emergency Departments (EDs), 20 January–2 March 2020, aiming at describing fluid administration in patients with suspected infection. Patients were stratified into the groups: simple infection or sepsis, in accordance with SEPSIS-3-guidelines. The primary outcome of the current study was 24-h total fluid volume (oral and intravenous) stratified by transportation mode to the EDs.Main resultsTotal 24-h fluids were registered for 734 patients. Patients with simple infection or sepsis arriving by EMS (n = 388, 54%) received mean 3,774 ml (standard deviation [SD]: 1900) and non-EMS received 3,627 ml (SD: 1568); mean difference (MD) was 303 ml [95% CI: 32; 573] adjusted for age, site, and total SOFA-score. Patients brought in by EMS received more intravenous fluids (MD: 621 ml [95% CI: 378; 864]) and less oral fluids (MD: -474 ml [95% CI: −616; −333]) than non-EMS patients.ConclusionPatients transported by EMS received more intravenous fluids and less oral fluids but overall, more fluid in total in the first 24-h than non-EMS after adjusting for age, site and SOFA-score.
The combination of chest compression synchronized ventilation and aortic balloon occlusion improve the outcomes of cardiopulmonary resuscitation in swine
Authors: Xu Jiefeng , Khan Zafar Ullah , Zhang Minhai , Wang Jiangang , Zhou Meiya , Zheng Zhongjun , Chen Qijiang , Zhou Guangju , Zhang Mao 
Published: December 2022

AimThe primary mission of cardiopulmonary resuscitation (CPR) is to provide adequate blood flow and oxygen delivery for restoring spontaneous circulation from cardiac arrest (CA) events. Previously, studies demonstrated that chest compression synchronized ventilation (CCSV) improved systemic oxygen supply during CPR, and aortic balloon occlusion (ABO) augments the efficacy of external CPR by increasing blood perfusion to vital organs. However, both them failed to make a significant improvement in return of spontaneous circulation (ROSC). In this study, we investigated the effects of combined CCSV and ABO on the outcomes of CPR in swine.MethodsThirty-one male domestic swine were subjected to 8 min of electrically induced and untreated CA followed by 8 min of CPR. CPR was performed by continuous chest compressions and mechanical ventilation. At the beginning of CPR, the animals were randomized to receive intermittent positive pressure ventilation (IPPV, n = 10), CCSV (n = 7), IPPV + ABO (n = 7), or CCSV + ABO (n = 7). During CPR, gas exchange and systemic hemodynamics were measured, and ROSC was recorded. After resuscitation, the function and injury biomarkers of vital organs including heart, brain, kidney, and intestine were evaluated.ResultsDuring CPR, PaO2 was significantly higher accompanied by significantly greater regional cerebral oxygen saturation in the CCSV and CCSV + ABO groups than the IPPV group. Coronary perfusion pressure, end-tidal carbon dioxide, and carotid blood flow were significantly increased in the IPPV + ABO and CCSV + ABO groups compared with the IPPV group. ROSC was achieved in five of ten (IPPV), five of seven (CCSV), six of seven (IPPV + ABO), and seven of seven (CCSV + ABO) swine, with the rate of resuscitation success being significantly higher in the CCSV + ABO group than the IPPV group (P = 0.044). After resuscitation, significantly improved myocardial and neurological function, and markedly less cardiac, cerebral, renal, and intestinal injuries were observed in the CCSV + ABO group compared with the IPPV group.ConclusionThe combination of CCSV and ABO improved both ventilatory and hemodynamic efficacy during CPR, promoted ROSC, and alleviated post-resuscitation multiple organ injury in swine.
SiMeEx, a simplified method for metabolite extraction of adherent mammalian cells
Authors: Henne Antonia , Vigh Anna , Märtens Andre , Nonnenmacher Yannic , Ohm Melanie , Hosseini Shirin , More Tushar H. , Lauterbach Mario A. , Garritsen Hendrikus , Korte Martin , He Wei , Hiller Karsten 
Published: December 2022

A reliable method for metabolite extraction is central to mass spectrometry-based metabolomics. However, existing methods are lengthy, mostly due to the step of scraping cells from cell culture vessels, which restricts metabolomics in broader application such as lower cell numbers and high-throughput studies. Here, we present a simplified metabolite extraction (SiMeEx) method, to efficiently and quickly extract metabolites from adherent mammalian cells. Our method excludes the cell scraping step and therefore allows for a more efficient extraction of polar metabolites in less than 30 min per 12-well plate. We demonstrate that SiMeEx achieves the same metabolite recovery as using a standard method containing a scraping step, in various immortalized and primary cells. Omitting cell scraping does not compromise the performance of non-targeted and targeted GC-MS analysis, but enables metabolome analysis of cell culture on smaller well sizes down to 96-well plates. Therefore, SiMeEx demonstrates advantages not only on time and resources, but also on the applicability in high-throughput studies.