bluuebunny/crossref_metadata_2025_split huggingface dataset:
Counterfactual scenarios reveal historical impact of cropland management on soil organic carbon stocks in the United States
Authors: Ogle Stephen M. , Breidt F. Jay , Del Grosso Stephen , Gurung Ram , Marx Ernie , Spencer Shannon , Williams Stephen , Manning Dale 
Published: September 2023

AbstractNatural climate solutions provide opportunities to reduce greenhouse gas emissions and the United States is among a growing number of countries promoting storage of carbon in agricultural soils as part of the climate solution. Historical patterns of soil organic carbon (SOC) stock changes provide context about mitigation potential. Therefore, our objective was to quantify the influence of climate-smart soil practices on SOC stock changes in the top 30 cm of mineral soils for croplands in the United States using the DayCent Ecosystem Model. We estimated that SOC stocks increased annually in US croplands from 1995 to 2015, with the largest increase in 1996 of 16.6 Mt C (95% confidence interval ranging from 6.1 to 28.2 Mt CO2 eq.) and the lowest increase in 2015 of 10.6 Mt C (95% confidence interval ranging from − 1.8 to 22.2 Mt C). Most climate-smart soil practices contributed to increases in SOC stocks except for winter cover crops, which had a negligible impact due to a relatively small area with cover crop adoption. Our study suggests that there is potential for enhancing C sinks in cropland soils of the United States although some of the potential has been realized due to past adoption of climate-smart soil practices.
A multicenter retrospective analysis of clinical outcomes of intracranial chondrosarcoma in 26 patients
Authors: Liu Hongyuan , Li Zongping , Xue Yafei , Zhao Tianzhi , Wu Yingxi 
Published: September 2023

AbstractIntracranial chondrosarcoma is a rare tumor with limited reports. We reviewed the clinical outcomes, imaging findings, and pathological characteristics at three centers to improve the diagnosis and treatment of intracranial chondrosarcoma. We retrospectively analyzed 26 patients with intracranial chondrosarcoma who had undergone surgical treatment at Tangdu Hospital of Air Force Military Medical University, Mianyang Central Hospital, and Nanchong Central Hospital from January 2010 to July 2022. Clinical manifestations, imaging features, surgical treatment, prognosis, and overall survival (OS) were analyzed. All 26 chondrosarcomas were located at the skull base. Gross total resection (GTR), subtotal resection (STR), and partial resection (PR) were performed in 14, 10, and 2 cases, respectively. Four cases underwent endoscopic transnasal surgery, while the remaining cases underwent craniotomy. The clinical symptoms were evaluated 1 week after surgery, and 15 cases were relieved to varying degrees. Postoperative complications included pulmonary infection, subcutaneous hydrops, dysphagia and choking, facial numbness, abducens paralysis, and intracranial infection (ICI). Fifteen cases received postoperative adjuvant radiotherapy. Seven cases showed recurrence: two with PR, four with STR, and one with GTR. Six cases received reoperation or radiotherapy after tumor progression, and one untreated patient died 5 months after tumor recurrence. The extent of tumor resection (HR 21.74, 95% CI 1.25–376.6, P = 0.03) and pathological grading (HR 131.99, 95% CI 4.05–4300.5, P = 0.006) were associated with improved OS. We presented our experience in the treatment of intracranial chondrosarcoma at three centers in the past 12 years. Intracranial chondrosarcoma lacked typical imaging features and are difficult to differentiate from other skull base lesions. Maximum extent of tumor resection with minimal injury to neurological function remains the most important treatment strategy. The extent of surgical resection and pathological grading were found to be predictors for OS.
Independent association between age- and sex-specific metabolic syndrome severity score and cardiovascular disease and mortality
Authors: Honarvar Mohammadjavad , Mehran Ladan , Masoumi Safdar , Agahi Sadaf , Khalili Shayesteh , Azizi Fereidoun , Amouzegar Atieh 
Published: September 2023

AbstractTraditional metabolic syndrome (MetS) criteria have several limitations, which hinder its use in clinical practice. To overcome the limitations, we investigated the association between age- and sex-specific continuous MetS severity score (cMetS-S) and cardiovascular disease (CVD) and mortality beyond MetS components in the framework of the Tehran Lipid and Glucose Study. Participants aged 20–60 years at baseline were included in the study. We excluded participants with CVD, cancer, use of corticosteroids, estimated glomerular filtration rate < 30 ml/min/1.73 m2, and those who were pregnant. We evaluated the association between cMetS-S with CVD and mortality over 18 years of follow-up among 8500 participants with continuous and quantile approaches using the Cox proportional hazard regression model. In addition, the model performance of cMetS-S for predicting CVD events was compared to the conventional MetS criteria. Participants with higher cMetS-S had a significantly increased risk for CVD, coronary (CHD) and non-coronary heart disease (non-CHD), and all-cause, cardiovascular, and sudden cardiac death. Independent of the confounders and MetS components, the cMetS-S had the HRs of 1.67 (95% CI 1.47–1.89), 1.60 (95% CI 1.37–1.86), and 1.88 (95% CI 1.50, 2.35) for CVD, CHD, and non-CHD events upon 1-SD increment, respectively. The risk of mortality was increased for 1-SD of cMetS-S (all-cause mortality, HR 1.24; 95% CI 1.09–1.41; CVD mortality, HR 1.72; 95% CI 1.20–2.45; sudden cardiac death, HR 1.60; 95% CI 1.03–2.49). The model fitness of cMetS-S was superior to the conventional MetS criteria in predicting CVD and mortality. The cMetS-S provided an additional risk for CVD and mortality beyond the individual MetS components. Standardized cMetS-S could be a potential universal measure to define MetS severity while considering the weighted contribution of MetS components and their variations by age, sex, and ethnicity.
Widespread learned predator recognition to an alien predator across populations in an amphibian species
Authors: Polo-Cavia Nuria , Arribas Rosa , Caballero-Díaz Carlos , Baltanás Ángel , Gomez-Mestre Ivan 
Published: September 2023

AbstractAlien predators are a major cause of decline and extinction of species worldwide, since native organisms are rarely equipped with specific antipredatory strategies to cope with them. However, phenotypic plasticity and learned predator recognition may help prey populations to survive novel predators. Here we examine geographical variation in the learning ability of larval spadefoot toads (Pelobates cultripes) to recognize invasive predatory crayfish (Procambarus clarkii). We compare the learning-mediated behavioural responses of tadpoles from six populations across two regions in Spain (central and southern), with different histories of exposure to the presence of the invasive species. Two of the populations showed innate recognition of chemical cues from the invasive crayfish, whereas three of them learned to recognize such cues as a threat after conditioning with conspecific alarm cues. Learning abilities did not differ among southern populations, but they did among central populations. We assessed patterns of genetic variation within and among these two regions through microsatellite markers and found low genetic divergence among the southern populations but greater differentiation among the central ones. We hypothesize that similar responses to the invasive crayfish in southern populations may have arisen from a combination of extended historical exposure to this introduced predator (~ 50 y) and higher levels of gene flow, as they inhabit a highly interconnected pond network. In contrast, populations from central Spain show lower connectivity, have been exposed to the invasive crayfish for a shorter period of time, and are more divergent in their plastic responses.
Photoacoustic based evaluation of viscoelastic properties of Gram-negative and Gram-positive bacterial colonies
Authors: Hosseindokht Zahra , Kolahdouz Mohammadreza , Hajikhani Bahareh , Sasanpour Pezhman 
Published: September 2023

AbstractMechanical properties of bacterial colonies are crucial considering both addressing their pathogenic effects and exploring their potential applications. Viscoelasticity is a key mechanical property with major impacts on the cell shapes and functions, which reflects the information about the cell envelope constituents. Hereby, we have proposed the application of photoacoustic viscoelasticity (PAVE) for studying the rheological properties of bacterial colonies. In this regard, we employed an intensity-modulated laser beam as the excitation source followed by the phase delay measurement between the generated PA signal and the reference for the characterization of colonies of two different types of Gram-positive and Gram-negative bacteria. The results of our study show that the colony of Staphylococcus aureus as Gram-positive bacteria has a significantly higher viscoelasticity ratio compared to that value for Acinetobacter baumannii as Gram-negative bacteria (77% difference). This may be due to the differing cell envelope structure between the two species, but we cannot rule out effects of biofilm formation in the colonies. Furthermore, a lumped model has been provided for the mechanical properties of bacterial colonies.
Inhibitory effect of Sanguisorba hakusanensis Makino ethanol extract on atopic dermatitis-like responses in NC/Nga mice and human keratinocytes
Authors: Song Hyun-Kyung , Park Sun Haeng , Kim Hye Jin , Jang Seol , Choo Byung-Kil , Kim Ho Kyoung , Kim Taesoo 
Published: September 2023

AbstractAtopic dermatitis (AD) is an allergic, inflammatory skin disease caused by immune dysregulation. In this study, we investigated anti-atopic and anti-inflammatory activities of Sanguisorba hakusanensis ethanol extract (SHE) both in vivo using NC/Nga mice and in vitro using human HaCaT keratinocytes. Oral administration of SHE suppressed several atopic symptoms associated with house dust mites (induced with Dermatophagoides farinae extract) in NC/Nga mice and decreased serum levels of inflammatory mediators such as immunoglobulin E, histamine, and inflammatory chemokines. Additionally, SHE treatment reduced the infiltration of immune cells such as mast cells and macrophages in AD skin lesions. In vitro, interferon-γ- and tumor necrosis factor-α-stimulated HaCaT cells exhibited increased expression of T helper 1 and 2 chemokines; their expression was inhibited by SHE treatment. The anti-inflammatory effects of SHE treatment involved blocking of the mitogen-activated protein kinase and signal transducer and activator of transcription 1 signaling pathways. In conclusion, SHE exerts potent anti-atopic and anti-inflammatory effects and should be considered for the clinical treatment of AD.
Upcycling of waste EPS beads to immobilized codoped TiO2 photocatalysts for ciprofloxacin degradation and E. coli disinfection under sunlight
Authors: Manjunatha Manasa , Mahalingam Hari 
Published: September 2023

AbstractThe emerging global problem of antimicrobial resistance needs immediate attention. In this regard, this work demonstrates the use of expanded polystyrene waste in the synthesis of immobilized photocatalytic films for the treatment of antibiotics as well as for bacterial disinfection. A boron–cerium codoped TiO2 catalyst (of specific composition: B0.8Ce0.2TiO2) was immobilized in an expanded polystyrene (EPS) film prepared from waste EPS beads. These films were studied for the degradation of ciprofloxacin (CIP) and disinfection of E. coli under sunlight. The film with a catalyst loading of 20 wt% showed a maximum degradation of 89% in 240 min with a corresponding TOC reduction of 84%. A 7.4 and 6.3 log reduction from the bacterial inactivation studies in the presence and absence of antibiotics, respectively, was obtained. The EPS film was stable after five times of reuse, and no significant chemical changes in the used film were observed from FTIR analysis. The average thickness of the prepared film was found from FESEM analysis to be 1.09 mm. These EPS films were also tested for degradation of other antibiotics, such as norfloxacin, levofloxacin and moxifloxacin. The EPS films were tested in two different reactor volumes at optimum conditions. Also, the effectiveness of B0.8Ce0.2TiO2/EPS film in real water samples indicates its potential in large-scale and real-world applications. Thus, these B0.8Ce0.2TiO2/EPS films can be effectively employed for both degradation of ciprofloxacin and the disinfection of E. coli under solar light to solve the increasing problem of antimicrobial resistance.
Asymmetric quantum decision-making
Authors: Shiratori Honoka , Shinkawa Hiroaki , Röhm André , Chauvet Nicolas , Segawa Etsuo , Laurent Jonathan , Bachelier Guillaume , Yamagami Tomoki , Horisaki Ryoichi , Naruse Makoto 
Published: September 2023

AbstractCollective decision-making plays a crucial role in information and communication systems. However, decision conflicts among agents often impede the maximization of potential utilities within the system. Quantum processes have shown promise in achieving conflict-free joint decisions between two agents through the entanglement of photons or the quantum interference of orbital angular momentum (OAM). Nonetheless, previous studies have shown symmetric resultant joint decisions, which, while preserving equality, fail to address disparities. In light of global challenges such as ethics and equity, it is imperative for decision-making systems to not only maintain existing equality but also address and resolve disparities. In this study, we investigate asymmetric collective decision-making theoretically and numerically using quantum interference of photons carrying OAM or entangled photons. We successfully demonstrate the realization of asymmetry; however, it should be noted that a certain degree of photon loss is inevitable in the proposed models. We also provide an analytical formulation for determining the available range of asymmetry and describe a method for obtaining the desired degree of asymmetry.
A bio-inspired convolution neural network architecture for automatic breast cancer detection and classification using RNA-Seq gene expression data
Authors: Mohamed Tehnan I. A. , Ezugwu Absalom E. , Fonou-Dombeu Jean Vincent , Ikotun Abiodun M. , Mohammed Mohanad 
Published: September 2023

AbstractBreast cancer is considered one of the significant health challenges and ranks among the most prevalent and dangerous cancer types affecting women globally. Early breast cancer detection and diagnosis are crucial for effective treatment and personalized therapy. Early detection and diagnosis can help patients and physicians discover new treatment options, provide a more suitable quality of life, and ensure increased survival rates. Breast cancer detection using gene expression involves many complexities, such as the issue of dimensionality and the complicatedness of the gene expression data. This paper proposes a bio-inspired CNN model for breast cancer detection using gene expression data downloaded from the cancer genome atlas (TCGA). The data contains 1208 clinical samples of 19,948 genes with 113 normal and 1095 cancerous samples. In the proposed model, Array-Array Intensity Correlation (AAIC) is used at the pre-processing stage for outlier removal, followed by a normalization process to avoid biases in the expression measures. Filtration is used for gene reduction using a threshold value of 0.25. Thereafter the pre-processed gene expression dataset was converted into images which were later converted to grayscale to meet the requirements of the model. The model also uses a hybrid model of CNN architecture with a metaheuristic algorithm, namely the Ebola Optimization Search Algorithm (EOSA), to enhance the detection of breast cancer. The traditional CNN and five hybrid algorithms were compared with the classification result of the proposed model. The competing hybrid algorithms include the Whale Optimization Algorithm (WOA-CNN), the Genetic Algorithm (GA-CNN), the Satin Bowerbird Optimization (SBO-CNN), the Life Choice-Based Optimization (LCBO-CNN), and the Multi-Verse Optimizer (MVO-CNN). The results show that the proposed model determined the classes with high-performance measurements with an accuracy of 98.3%, a precision of 99%, a recall of 99%, an f1-score of 99%, a kappa of 90.3%, a specificity of 92.8%, and a sensitivity of 98.9% for the cancerous class. The results suggest that the proposed method has the potential to be a reliable and precise approach to breast cancer detection, which is crucial for early diagnosis and personalized therapy.
CRISPR imaging reveals chromatin fluctuation at the centromere region related to cellular senescence
Authors: Takata Hideaki , Masuda Yumena , Ohmido Nobuko 
Published: September 2023

AbstractThe human genome is spatially and temporally organized in the nucleus as chromatin, and the dynamic structure of chromatin is closely related to genome functions. Cellular senescence characterized by an irreversible arrest of proliferation is accompanied by chromatin reorganisation in the nucleus during senescence. However, chromatin dynamics in chromatin reorganisation is poorly understood. Here, we report chromatin dynamics at the centromere region during senescence in cultured human cell lines using live imaging based on the clustered regularly interspaced short palindromic repeat/dCas9 system. The repetitive sequence at the centromere region, alpha-satellite DNA, was predominantly detected on chromosomes 1, 12, and 19. Centromeric chromatin formed irregular-shaped domains with high fluctuation in cells undergoing 5′-aza-2′-deoxycytidine-induced senescence. Our findings suggest that the increased fluctuation of the chromatin structure facilitates centromere disorganisation during cellular senescence.
On the cardiorespiratory coordination assessed by the photoplethysmography imaging technique
Authors: Borik Stefan , Keller Micha , Perlitz Volker , Lyra Simon , Pelz Holger , Müller Gero , Leonhardt Steffen , Blazek Vladimir 
Published: September 2023

AbstractCardiorespiratory coordination (CRC) probes the interaction between cardiac and respiratory oscillators in which cardiac and respiratory activity are synchronized, with individual heartbeats occurring at approximately the same temporal positions during several breathing cycles. An increase of CRC has previously been related to pathological stressful states. We studied CRC employing coordigrams computed from non-contact photoplethysmography imaging (PPGI) and respiratory data using the optical flow method. In a blocked study design, we applied the cold pressure test (CPT), water at ambient temperature (AWT), and intermittent resting conditions. In controls (no intervention), CRC remained on initial low levels throughout measurements. In the experimental group (AWT and CPT intervention), CRC decreased during AWT and CPT. Following both interventions, CRC increased significantly, with a rebound effect following AWT. In controls, HR increased steadily over time. CPT evoked a significant HR increase which correlated with subjective stress/pain ratings. The CRC increase following AWT correlated significantly with subjective pain (r = .79) and stress (r = .63) ratings. Furthermore, we observed a significant correlation (r = − .80) between mean RMSSD and mean duration of CRC, which further supports an association between autonomic state and CRC level. CRC analysis obtained from cutaneous tissue perfusion data therefore appears to be a sensitive and useful method for the study of CRC and ANS activity. Future studies need to investigate the physiological principles and clinical significance of these findings.
Tmem161a regulates bone formation and bone strength through the P38 MAPK pathway
Authors: Nagai Takuya , Sekimoto Tomohisa , Kurogi Syuji , Ohta Tomomi , Miyazaki Shihoko , Yamaguchi Yoichiro , Tajima Takuya , Chosa Etsuo , Imasaka Mai , Yoshinobu Kumiko , Araki Kimi , Araki Masatake , Choijookhuu Narantsog , Sato Katsuaki , Hishikawa Yoshitaka , Funamoto Taro 
Published: September 2023

AbstractBone remodeling is an extraordinarily complex process involving a variety of factors, such as genetic, metabolic, and environmental components. Although genetic factors play a particularly important role, many have not been identified. In this study, we investigated the role of transmembrane 161a (Tmem161a) in bone structure and function using wild-type (WT) and Tmem161a-depleted (Tmem161aGT/GT) mice. Mice femurs were examined by histological, morphological, and bone strength analyses. Osteoblast differentiation and mineral deposition were examined in Tmem161a-overexpressed, -knockdown and -knockout MC3T3-e1 cells. In WT mice, Tmem161a was expressed in osteoblasts of femurs; however, it was depleted in Tmem161aGT/GT mice. Cortical bone mineral density, thickness, and bone strength were significantly increased in Tmem161aGT/GT mice femurs. In MC3T3-e1 cells, decreased expression of alkaline phosphatase (ALP) and Osterix were found in Tmem161a overexpression, and these findings were reversed in Tmem161a-knockdown or -knockout cells. Microarray and western blot analyses revealed upregulation of the P38 MAPK pathway in Tmem161a-knockout cells, which referred as stress-activated protein kinases. ALP and flow cytometry analyses revealed that Tmem161a-knockout cells were resistant to oxidative stress. In summary, Tmem161a is an important regulator of P38 MAPK signaling, and depletion of Tmem161a induces thicker and stronger bones in mice.
Unveiling the origin of n-type doping of natural MoS2: carbon
Authors: Park Youngsin , Li Nannan , Jung Daesung , Singh Laishram Tomba , Baik Jaeyoon , Lee Eunsook , Oh Dongseok , Kim Young Dok , Lee Jin Yong , Woo Jeongseok , Park Seungmin , Kim Hanchul , Lee Geunseop , Lee Geunsik , Hwang Chan-Cuk 
Published: September 2023

AbstractMoS2 has attracted intense interest in many applications. Natural MoS2 and field-effect transistors made of it generally exhibit n-type characteristics, but its origin is unknown. Herein, we show that C is the origin of the universal n-type doping of natural MoS2. Photoemission spectroscopies reveal that while many MoS2 samples with C detected are n-type, some without C exhibit p-type characteristics. The C-free, p-type MoS2 changes to n-type over time with the concurrent appearance of C that is out-diffused from bulk, indicating that C induces the n-type doping. The C-origin is verified by C-deposition and supported by theoretical calculations. This carbon appears as nanometer-scale defects frequently observed in scanning tunneling microscopy. In addition, we propose, based on the calculations, that S vacancies are responsible for the p-type characteristics, which contrasts with the widespread belief. This work provides new perspectives on MoS2 doping and presents a new direction for fabricating reliable MoS2 devices.