bluuebunny/crossref_metadata_2025_split huggingface dataset:
Metabolic profiling reveals metabolic features of consolidation therapy in pediatric acute lymphoblastic leukemia
Authors: Fu Jinqiu , Zhang Aijun , Liu Qinqin , Li Dong , Wang Xiaoming , Si Libo 
Published: January 2023

AbstractAcute lymphoblastic leukemia (ALL) and its treatment continue to pose substantial risks. To understand ALL more deeply, the metabolome in fasting plasma of 27 ALL patients before and after high-dose methotrexate therapies (consolidation therapy) including methotrexate and 6-mercaptopurine (6-MP) was investigated. Plasma metabolites were analyzed using liquid chromatography–tandem mass spectrometry (LC–MS). Orthogonal projections to latent structures discriminant analysis and significance analysis of microarrays were used to evaluate the metabolic changes. Pathway enrichment and co-expression network analyses were performed to identify clusters of molecules, and 2826 metabolites were identified. Among them, 38 metabolites were identified by univariate analysis, and 7 metabolites that were altered by conditioning therapy were identified by multivariate analysis. The Kyoto Encyclopedia of Genes and Genomes (KEGG) database was used for pathway enrichment analysis. Among the enriched KEGG pathways, the 3 significantly altered metabolic pathways were pyrimidine metabolism; phenylalanine, tyrosine, and tryptophan biosynthesis; and phenylalanine metabolism. In addition, L-phenylalanine was significantly correlated with blood urea nitrogen (BUN), and palmitoylcarnitine was correlated with aspartate aminotransferase (AST). In summary, consolidation therapy significantly affected pyrimidine- and phenylalanine-associated metabolic pathways in pediatric ALL patients. These findings may provide an insight into the role of metabolic profiling in consolidation treatment and as a potential for pediatric ALL patients.
Seepage failure prediction of breakwater using an unresolved ISPH-DEM coupling method enriched with Terzaghi’s critical hydraulic gradient
Authors: Tsuji Kumpei , Asai Mitsuteru , Kasama Kiyonobu 
Published: January 2023

AbstractThis study develops a new numerical simulation model for rubble mound failure prediction caused by piping destruction under seepage flows. The piping has been pointed out as a significant cause of breakwater failure during tsunamis. Once boiling and heaving occur on the mound surface, the piping suddenly propagates in the opposite direction of seepage flow. For the seepage failure prediction, a coupled fluid-soil-structure simulator is developed by combining the ISPH for fluid and the DEM for rubble mounds and caisson blocks. The ISPH, a Lagrangian particle method for incompressible fluids, can simulate seepage and violent flows such as tsunamis. The DEM has been applied for discrete particle and rigid body simulations that include discontinuous deformation, as in the rubble mounds failure and large displacement of the caisson block. ISPH-DEM coupling simulations have already been proposed as a technique for multi-phase flows. Still, the technique cannot reproduce the sudden onset of piping from a stable mound. Two simple assumptions are applied to reduce the numerical cost for the fluid-soil-structure simulators of a breakwater structure composed of a rubble mound and the caisson block. Firstly, each rubble is modeled as an idealized spherical DEM particle with the mean diameter of the rubble. The ISPH particle size is assumed to be the same size as the DEM particle. Under these assumptions, the unresolved coupling model between rubble mound particles and fluid, which obtains the interaction through empirical drag force, should be applied. At the same time, the interaction between the fluid and the caisson block is fully resolved with the spatial resolution with the ISPH and DEM particle size. Our new contribution in this paper is how to model the interaction as an unresolved coupling between seepage flow simulated by ISPH and rubble mound particle modeled with DEM. Our original seepage failure experiment is simulated using the proposed ISPH-DEM coupling simulator. We identified the conventional drag force models as the unresolved coupling model are insufficient to initiate the boiling and piping observed in the experiment. It may be due in one part to excessive averaging of flow velocities caused by unresolved coupling. Therefore, Terzaghi’s critical hydraulic gradient is introduced to initiate the boiling and heaving. Unstable DEM particles, judged by Terzaghi’s critical hydraulic gradient, gradually lose their mass to represent unresolved suspended fine rubble mound particles. Our models qualitatively reproduce the sand boiling and backward erosion in the opposite direction of the seepage flow, as shown in the experiment.
The relationship between meaning of life, perceived social support, spiritual well-being and pain catastrophizing with quality of life in migraine patients: the mediating role of pain self-efficacy
Authors: Yousefi Afrashteh Majid , Abbasi Mahya , Abbasi Mahsa 
Published: January 2023

AbstractBackgroundMigraine is a neurological disease that has several physical and psychological complications, which is characterized by disability and impaired quality of life.AimsThe aim of this study was to explore the mediating role of pain self-efficacy in the relationship between meaning of life, perceived social support, spiritual well-being and pain catastrophizing with quality of life in migraine sufferers. The relationship between these factors with quality of life (QOL) was not fully explored in migraine patients.MethodThis study was a correlational study of structural equations. Therefore, 300 patients with migraine who referred to one of the specialized neurological treatment centers in Zanjan in 2021 were recruited based on the inclusion criteria. Patients also completed the World Health Organization Quality of Life Scale (WHOQOL-BREF), Meaning in Life Questionnaire, Multidimensional Scale of Perceived Social Support, Spiritual Well-Being Scale, Pain Catastrophizing Scale, Pain Self-Efficacy Questionnaire. Finally, the hypotheses were then analyzed with correlation coefficient and path analysis method by using SPSS-26 and LISREL-10.2 programs.ResultsThe results of the present study showed that pain self-efficacy has a mediating role in the relationship between meaning of life and quality of life (B = 0.015), perceived social support with quality of life (B = 0.022), spiritual well-being with quality of life (B = 0.021), as well as pain catastrophizing with quality of life (B = − 0.015).ConclusionAccording to the results of this study, by considering the role of self-efficacy of pain, it is possible to develop the programs to strengthen and improve the meaning of life, perceived social support, spiritual well-being and also reduce pain catastrophizing, in order to improve the quality of life of patients with migraine.
Parkin coregulates glutathione metabolism in adult mammalian brain
Authors: El Kodsi Daniel N. , Tokarew Jacqueline M. , Sengupta Rajib , Lengacher Nathalie A. , Chatterji Ajanta , Nguyen Angela P. , Boston Heather , Jiang Qiubo , Palmberg Carina , Pileggi Chantal , Holterman Chet E. , Shutinoski Bojan , Li Juan , Fehr Travis K. , LaVoie Matthew J. , Ratan Rajiv R. , Shaw Gary S. , Takanashi Masashi , Hattori Nobutaka , Kennedy Christopher R. , Harper Mary-Ellen , Holmgren Arne , Tomlinson Julianna J. , Schlossmacher Michael G. 
Published: January 2023

AbstractWe recently discovered that the expression of PRKN, a young-onset Parkinson disease-linked gene, confers redox homeostasis. To further examine the protective effects of parkin in an oxidative stress model, we first combined the loss of prkn with Sod2 haploinsufficiency in mice. Although adult prkn−/−//Sod2± animals did not develop dopamine cell loss in the S. nigra, they had more reactive oxidative species and a higher concentration of carbonylated proteins in the brain; bi-genic mice also showed a trend for more nitrotyrosinated proteins. Because these redox changes were seen in the cytosol rather than mitochondria, we next explored the thiol network in the context of PRKN expression. We detected a parkin deficiency-associated increase in the ratio of reduced glutathione (GSH) to oxidized glutathione (GSSG) in murine brain, PRKN-linked human cortex and several cell models. This shift resulted from enhanced recycling of GSSG back to GSH via upregulated glutathione reductase activity; it also correlated with altered activities of redox-sensitive enzymes in mitochondria isolated from mouse brain (e.g., aconitase-2; creatine kinase). Intriguingly, human parkin itself showed glutathione-recycling activity in vitro and in cells: For each GSSG dipeptide encountered, parkin regenerated one GSH molecule and was S-glutathionylated by the other (GSSG + P-SH $$\to$$
→
GSH + P-S-SG), including at cysteines 59, 95 and 377. Moreover, parkin’s S-glutathionylation was reversible by glutaredoxin activity. In summary, we found that PRKN gene expression contributes to the network of available thiols in the cell, including by parkin’s participation in glutathione recycling, which involves a reversible, posttranslational modification at select cysteines. Further, parkin’s impact on redox homeostasis in the cytosol can affect enzyme activities elsewhere, such as in mitochondria. We posit that antioxidant functions of parkin may explain many of its previously described, protective effects in vertebrates and invertebrates that are unrelated to E3 ligase activity.
Ultrasensitive and colorimetric small extracellular vesicles (sEVs) analysis via dual-cycle signal tool
Authors: Ning Linhong , Zhou Yuan , Xie Yang , Duan Zhixiong , Yu Feng , Cheng Heng 
Published: January 2023

AbstractFor the clinical diagnosis of diseases and for basic biological research, it is crucial to develop a trustworthy and efficient method for detecting small extracellular vesicles (sEVs) in multiple experimental conditions. Here, we create a colorimetric assay that enables sensitive and precise sEVs identification without the need for pricey equipment. In this assay, the exonuclease III (Exo III)-assisted signal recycle is activated by the released single-strand DNA (ssDNA) from SMBs (streptavidin magnetic beads)-aptamer-ssDNA complex after identification of sEVs. By integrating with the strand displacement amplification (SDA) process, a significant amount of double-strand DNA products with G-rich tails is produced. The G-rich tails fold to G-quadruplex under the assistance of hemin to catalyze the oxidation of TMB, yielding a color change. The approach offers a broad detection range of 5 orders of magnitudes based on the signal recycles and SDA. In addition, single-stranded DNA binding protein (SSB) is exploited in this method to minimize the background signal from non-specific digestion of Exo-III, making the method a robust tool for sEVs detection and disease diagnosis.
Local resource mobilization for malaria vector control among Rwandan rice farmers: a pilot study into the role of community ownership
Authors: Rulisa Alexis , van Kempen Luuk , Hakizimana Emmanuel , Koenraadt Constantianus J. M. 
Published: January 2023

Abstract
Background
Evidence suggests a vicious cycle between rice cultivation and malaria control in Rwanda. Rice fields offer an attractive breeding ground for malaria vectors, which increases the disease burden in rice farming communities, and, consequently, reduces productivity in the rice sector. Community-based larval source management in rice fields is propagated as a sustainable solution to break this cycle. A sense of agency and ownership of malaria control interventions, as well as the mobilization of resources at the local level, are often considered preconditions for success. However, an evidence gap exists regarding the interaction between the agentive and financial dimension of local sustainability.

Methods
We conduct a larviciding pilot involving three groups; one group where rice farmers sprayed their fields under expert supervision, one group where rice farmers organised the larviciding campaign themselves, and a (non-sprayed) control group. We test whether the difference in agency between the intervention groups affects farmers’ willingness-to-pay for a larviciding campaign. Willingness-to-pay is elicited in a contingent valuation exercise, more specifically a bidding game, and is assessed both before and after the pilot (n = 288). Difference-in-difference estimates are computed, using a propensity score matching technique. Supplementary data were collected in a survey and two focus group discussions for triangulation.

Results
The high-agency (self-organised) group significantly outperforms the low-agency (expert-supervised) group in terms of maintaining its willingness to contribute financially. However, higher willingness-to-pay in the high-agency group does not appear to be driven by a stronger sense of ownership per se. The supplementary data indicate high levels of ownership in both treatment groups compared to the control group. A tentative explanation lies in diverging perceptions concerning the effectiveness of the pilot.

Conclusions
The study supports the idea that community-led organization of larval source management can prove instrumental in mobilizing finance for malaria control in low-income settings where rice production interferes with the fight against malaria. However, the causality is complex. Feelings of ownership do not appear the main driver of willingness-to-pay, at least not directly, which opens up the possibility of initiating community-driven malaria control interventions that promote the agentive and financial dimension of local sustainability simultaneously.
The state of the art of nanomaterials and its applications in energy saving
Authors: Hussein Hala. S. 
Published: January 2023

Abstract
Background
Nanomaterials have emerged as a fascinating class of materials in high demand for a variety of practical applications. They are classified based on their composition, dimensions, or morphology. For the synthesis of nanomaterials, two approaches are used: top-down approaches and bottom-up approaches.

Main body of the abstract
Nanoscale materials and structures have the potential to be used in the production of newly developed devices with high efficiency, low cost, and low energy demand in a variety of applications. There are several contributions in renewable energy conversion and storage in the energy sector, such as solar photovoltaic systems, fuel cells, solar thermal systems, lithium-ion batteries, and lighting. Furthermore, nanofluid-based solar collectors are a new generation of solar collectors based on the use of nanotechnology. It has the potential to increase collector efficiency by up to 30%.

Short conclusion
Graphene and graphene derivatives are known as more efficient energy-saving materials, with the ability to maximize heat transfer efficiency and save up to 30% of energy in water desalination. Silver nanoparticles (Ag NPs) are a powerful antibacterial material that can kill a wide variety of microorganisms. They are commonly used in water treatment and are incorporated into polyethersulfone (PES) microfiltration membranes. The use of an Ag-PES membrane improved the antibiofouling performance of PES membranes. From the industrial application of nanotechnology, applications of TiO2-based nanocoatings that can be used as dust-repellent coatings for solar panels improve their efficiency and reduce the amount of required maintenance. Furthermore, the nanoscale dimension of these particles facilitates their movement in various body parts, resulting in serious diseases such as cancer and organ damage. As a result, it is suggested to focus in our incoming research on the disposal of nanomaterial waste and their safe application.
Preliminary landscape analysis of deep tomographic imaging patents
Authors: Yang Qingsong , Lizotte Donna L. , Cong Wenxiang , Wang Ge 
Published: January 2023

AbstractOver recent years, the importance of the patent literature has become increasingly more recognized in the academic setting. In the context of artificial intelligence, deep learning, and data sciences, patents are relevant to not only industry but also academe and other communities. In this article, we focus on deep tomographic imaging and perform a preliminary landscape analysis of the related patent literature. Our search tool is PatSeer. Our patent bibliometric data is summarized in various figures and tables. In particular, we qualitatively analyze key deep tomographic patent literature.
Different vitamin K forms in hemodialysis patients: a simple dietary supplement to battle vascular calcification—randomized controlled trial
Authors: Elshinnawy Howaida Abdelhameed , El-Said Tamer Wahid , Fahmy Sarah Farid , Shamseldin Ahmed , Ibrahim Sherin , Elsharabasy Reem Mohsen 
Published: January 2023

Abstract
Background and aim
Vascular calcification is a significant risk factor for cardiovascular diseases in patients with end-stage renal disease, particularly those on hemodialysis. Previous research on vitamin K found that it had a positive on calcification markers. However, clinical data is still limited. This study aimed to compare the efficacy and safety of vitamin K2 versus vitamin k1 on a calcification regulator in hemodialysis patients.

Methods
A prospective randomized placebo-controlled trial was conducted on 120 patients, who were divided into three groups; group 1: administered 10 mg of vitamin K1 (phytomenadione thrice weekly); group 2: administered 90 μg of vitamin k2 (MK-7); group 3: administered placebo for 3 months. Matrix Gla protein (MGP), calcium, phosphorous, and intact parathyroid hormone levels were measured.

Results
MK-7 significantly increased active MGP levels compared to phytomenadione and placebo groups (p<0.0001). No correlations were found between calcium, phosphorous, PTH, and MGP levels at baseline or after treatment.

Conclusion
Vitamin k supplementation was effective and tolerable in modulating MGP in hemodialysis patients, with MK-7 outperforming phytomenadione.
Adherence to Oral Anticancer Medications Among Women With Breast Cancer in Africa: A Scoping Review
Authors: Onwusah Deborah O. , Ojewole Elizabeth B. , Chimbari Moses J. 
Published: January 2023

PURPOSEOral anticancer medications (OAMs) improve treatment outcomes and survival in women with breast cancer (BC). However, adherence to OAM therapy remains suboptimal. This scoping review provides evidence of adherence to OAMs among African women with BC.METHODSWe searched four databases and gray literature, using guidance from the Joanna Briggs Institute. Thirteen studies on adherence rates, determinants, and interventions were included. NVivo 12 software was used to perform thematic analysis of the included studies. The determinants (barriers and facilitators) associated with adherence were analyzed according to the five dimensions of the WHO multidimensional adherence model.RESULTSMost studies (n = 11, 85%) focused on endocrine medication. Depending on the definition, measurements, and assessment period, the nonadherence rates ranged from 4.3% to 65.4% for endocrine medications, 80.9% for cytotoxic chemotherapies, and 32.7% for combined medications. The significant barriers associated with adherence include Islamic religion, concurrent comorbidities, mastectomy, anastrozole treatment, side effects, unawareness of treatment insurance coverage, and seeking treatment from traditional healers. Thorough therapeutic communication regarding treatment, neoadjuvant chemotherapy, and adequate social support significantly facilitate adherence. A randomized controlled trial of breast nursing interventions reported improved patient adherence.CONCLUSIONThe evidence mapped from studies that evaluated OAM adherence in women with BC indicates that nonadherence to OAMs is common. Applying context-specific standardized measures to assess adherence and facilitators or strategies targeting the identified barriers can optimize adherence and treatment outcomes. Effective interventions to improve adherence are limited. Therefore, further empirical and interventional studies in Africa are required to enhance the evidence.
Outcomes of Universal Point-of-Care Genetic Testing in Diverse Patients With Pancreatic Ductal Adenocarcinoma
Authors: Drogan Christine M. , Kindler Hedy L. , Gao Guimin , Kupfer Sonia S. 
Published: January 2023

PURPOSE Guidelines recommend all patients with pancreatic ductal adenocarcinoma (PDAC) undergo germline genetic testing (GT). Rates of recommendation and completion of GT among diverse patients with PDAC are not known. The aim was to determine rates of recommendation and completion of point-of-care GT in diverse patients with PDAC. METHODS A retrospective review of patients with PDAC seen at an academic center between April 2019 and December 2020 was performed. Recommendation, completion and results of point-of-care GT, and demographic and clinical factors were recorded. Univariate and multivariate analyses of GT were performed using the chi-square test and logistic regression. RESULTS In total, 579 patients with PDAC were included. The median age at diagnosis was 67 years; 52% were male; 63% were non-Hispanic White (NHW) patients, and 20% were African American (AA) patients. GT was performed in 216 (37%) patients. Of those tested, 47 (22%) had a pathogenic/likely pathogenic variant identified of which 25 (12%) were in PDAC-associated genes. On multivariate analysis, age, NHW race, personal and family cancer history, medical oncology visit, and number of visits were independent predictors of GT completion. AA patients had significantly lower rates of recommendation and completion of GT compared with NHW patients. CONCLUSION Point-of-care GT in patients with PDAC is unacceptably low, especially among AA patients. Testing disparity might be due to lack of provider recommendation more than patient uptake. Lack of testing leads to missed opportunities for potential targeted therapies, improved outcomes, and identification of at-risk family members who could potentially benefit from surveillance.