bluuebunny/crossref_metadata_2025_split huggingface dataset:
The proportion of the egg berried female crabs and the hatching time based on differences in the eggs colour of the blue swimming crab in the crab box apartment
Authors: Qomariyah L , Wicaksono R Z , Nugroho K C , Setioko W 
Published: October 2023

Abstract
Fishermen in Pagagan Village who get the egg-berried female (EBF) of blue swimming crabs can store them in the Crab Box Apartment that has been provided on the coast so that the crabs incubate their eggs. The placement of EBF crabs in the crab box apartment showed fishermen actively participating in sustainable crab management. The EBF crabs are quite varied, especially in egg colour (yellow, orange, brown, and grey). This study used descriptive analysis to identify the EBF crab’s hatching time based on the egg colour that is incubated in the crab apartment. The result showed that the EBF crabs with yellow eggs have an average hatching time of more than 7 days. The orange eggs are, on average 5 days, the brown eggs are about 3 days, and the grey eggs are only 1 day. These hatching time records can also improve the implementation of the crab box apartment, which is a way to minimize the presence of EBF crabs in the supply chain and increase compliance, which leads to sustainability.
Potential of processed barnacles shell as soil conditioner using mung bean plants (Vigna radiata L.) growth
Authors: Buntaro G A , Avicenna R A 
Published: October 2023

Abstract
Barnacles as periphyte animals often found clinging on the ship’s hull, being unutilized waste that presents in such abundance. Calcium carbonate in barnacle shells would increase the chance of degrading microbial community survival in the soil, indirectly increasing soil fertility. The processing of barnacle shells to be used as a calcium carbonate supplement involves harvesting, drying, powdering, sterilizing, and mixing it to the soil. We want to observe comparison of the performance of control group (K), processed barnacle shells (T), industrial 16-16-16 NPK (Nitrogen, Phosphate, Potassium) fertilizer (P), and the combination of processed barnacle shell with 16-16-16 NPK fertilizer (TP) supplementation to the soil as planting media by the daily temperature, pH, and moisture fluctuation, besides the measurement of the growth of mung bean plant, Vigna radiata L. (VIMA 5 variant) regarding their application to the soil. The growth of V. radiata L. is measured by epicotyl length, number of leaves, and total wet mass increase of each plant individual. Vigna radiata L. in the control group shows the best growth measured by parameters listed above. However, ANOVA analysis shows statistical significance on the correlation of types of soil treatment (K, T, P, or TP supplementation) to daily moisture fluctuation.
Potential fishing grounds of Skipjack tuna (Katsuwonus pelamis) in western water of Sumatera using remotely sensed data and maximum entropy model
Authors: Syah A F , Ni’am A K , Jatisworo D 
Published: October 2023

Abstract
The fishery of skipjack tuna (Katsuwonus pelamis) was collected from the vessel monitoring system (VMS) as well as satellite oceanographic data for salinity, chlorophyll-a (chl-a) concentrations, and sea surface temperature (SST) used to determine the effects of oceanographic factors on potential fishing grounds for skipjack tuna in the western water of Sumatera (WWS). Salinity, chl-a and SST data were downloaded from the INDESO project website. The relationship between these parameters and the potential skipjack fishing area was analyzed using a maximum entropy (maxent) model. The Maxent model demonstrated its potential to predict the spatial distribution of skipjack, expressed as the area under the 0.852 curve value. In addition, jackknife test results indicate that the spatial pattern of fishery potential was influenced mainly by chl-a (0.50), followed by salinity (0.43) and SST (0.10). The integration of multi-sensor remote sensing data and modelling methods provides an ingenious way to determine a potential skipjack catch in the western water of Sumatera.
Preliminary: biodiversity of plankton in Sawaibu Bay, Manokwari, Indonesia
Authors: Ayu I P , Iswantari A , Wulandari D Y , Pratiwi N T M , Sulaiman G S A , Subhan B , Arafat D , Rahmadya A , Himawan M R , Suhaemi  
Published: October 2023

Abstract
As a biological parameter of the aquatic ecosystem, plankton has various species and forms a specific community for each water. Plankton can characterize the water’s condition through its species richness. Both phytoplankton and zooplankton were observed in this research to determine the biodiversity. Plankton samples were collected using a plankton net from the surface water of Sawaibu Bay, Manokwari City, West Papua Province, Indonesia. Morphological identification is applied to approximate the plankton genera and count the diversity indices. Classes of Cyanophyceae, Bacillariophyceae, Dinophyceae, Chrysophyceae, Protozoa, and Crustaceae were found in Sawaibu Bay. Phytoplankton from the Bacillariophyceae group (30-90 x 102 cell/m3) and zooplankton from the Crustacean group (1.51-38.6 x 102 ind/m3) were high in abundance. Both phytoplankton and zooplankton’s evenness, dominance, and diversity index varied between stations. The biodiversity approach could be a snapshot of the aquatic ecosystem state.
The cavity perturbation method for evaluating hematocrit via dielectric properties
Authors: Kamel Abdulla A , Alawajji Raad A , Kannarpady Ganesh K 
Published: October 2023

Abstract
The physical parameters of human blood (complex permittivity and conductivity) at microwave frequencies have been investigated to assess the hematocrit (HCT). The cavity perturbation method based on a rectangular cavity operated in TE101 mode at frequency 4.212 GHz has been utilized to measure the permittivity of blood with different hematocrit % at a range of temperatures. According to the results, the dielectric constant, loss factor, and conductivity appeared to be influenced by HCT level. Though the dielectric constant is the only parameter that shows clear linear regression decreasing behavior with a correlation value around (R2 = 0.93). For thirty healthy donors the dielectric constant decreases from (65.61 ± 1.4 to 44.64 ± 4.0) and from (65.3 ± 1.2 to 48.3 ± 1.88) for men and women, respectively, with increasing hematocrit percentage from 20% HCT up to 95% HCT. The temperature dependence of the dielectric constant is also examined in the temperature range 27 °C–50 °C and the results display a slight decrease in dielectric constant with elevation temperature. The temperature-dependence dielectric constant of water and blood samples were fitted to an empirical polynomial with temperature. A comparison of estimated HCT using the cavity technique based on dielectric properties shows a very good agreement with commercially standard HCT measurement methods. Finally, the cavity technique can be applied to measure the hematocrit up to high values based on the dielectric constant with high precision, simplicity, and low cost compared with traditional techniques.
Time optimal quantum state transfer in a fully-connected quantum computer
Authors: Jameson Casey , Basyildiz Bora , Moore Daniel , Clark Kyle , Gong Zhexuan 
Published: October 2023

Abstract
The speed limit of quantum state transfer (QST) in a system of interacting particles is not only important for quantum information processing, but also directly linked to Lieb–Robinson-type bounds that are crucial for understanding various aspects of quantum many-body physics. For strongly long-range interacting systems such as a fully-connected quantum computer, such a speed limit is still unknown. Here we develop a new quantum brachistochrone method that can incorporate inequality constraints on the Hamiltonian. This method allows us to prove an exactly tight bound on the speed of QST on a subclass of Hamiltonians experimentally realizable by a fully-connected quantum computer.
Sliding mode controller design for unstable processes with dead time with a case study on continuous stirred tank reactor
Authors: Ali Mohammed Hasmat , Anwar Md Nishat 
Published: October 2023

Abstract
Unstable processes are difficult to control because one or more poles lie on the right-hand side of the s-plane. Control becomes further complicated by the presence of dead time in such systems. In this study, a sliding mode control (SMC) design is proposed for the control of unstable processes with dead time. To apply the SMC, a second order plus dead time (SOPDT) model of the unstable process is used, and a proportional-integral-derivative-acceleration type sliding surface is considered. The parameters of continuous and discontinuous control laws are obtained using the differential evolution optimization technique. The optimal control problem is solved by satisfying a new weighted bi-objective function constituting the performance index integral absolute error and control input total variation. The proposed control scheme has been satisfactorily extended to control unstable integrating and higher-order unstable processes with dead time by approximating them into the unstable SOPDT model. The efficacy of the suggested scheme has been evaluated on several benchmark unstable industrial chemical processes, including the continuous stirred tank reactor (CSTR). Further, this scheme has been compared with recently reported work, and the obtained results clearly demonstrate the effectiveness of the suggested controller.
Finding simplicity: unsupervised discovery of features, patterns, and order parameters via shift-invariant variational autoencoders
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Authors: Ziatdinov Maxim , Wong Chun Yin (Tommy) , Kalinin Sergei V 
Published: October 2023

Abstract
Recent advances in scanning tunneling and transmission electron microscopies (STM and STEM) have allowed routine generation of large volumes of imaging data containing information on the structure and functionality of materials. The experimental data sets contain signatures of long-range phenomena such as physical order parameter fields, polarization, and strain gradients in STEM, or standing electronic waves and carrier-mediated exchange interactions in STM, all superimposed onto scanning system distortions and gradual changes of contrast due to drift and/or mis-tilt effects. Correspondingly, while the human eye can readily identify certain patterns in the images such as lattice periodicities, repeating structural elements, or microstructures, their automatic extraction and classification are highly non-trivial and universal pathways to accomplish such analyses are absent. We pose that the most distinctive elements of the patterns observed in STM and (S)TEM images are similarity and (almost-) periodicity, behaviors stemming directly from the parsimony of elementary atomic structures, superimposed on the gradual changes reflective of order parameter distributions. However, the discovery of these elements via global Fourier methods is non-trivial due to variability and lack of ideal discrete translation symmetry. To address this problem, we explore the shift-invariant variational autoencoders (shift-VAEs) that allow disentangling characteristic repeating features in the images, their variations, and shifts that inevitably occur when randomly sampling the image space. Shift-VAEs balance the uncertainty in the position of the object of interest with the uncertainty in shape reconstruction. This approach is illustrated for model 1D data, and further extended to synthetic and experimental STM and STEM 2D data. We further introduce an approach for training shift-VAEs that allows finding the latent variables that comport to known physical behavior. In this specific case, the condition is that the latent variable maps should be smooth on the length scale of the atomic lattice (as expected for physical order parameters), but other conditions can be imposed. The opportunities and limitations of the shift VAE analysis for pattern discovery are elucidated.
Transmission at different scales
Authors: Wayne Marta L. , Bolker Benjamin M. 
Published: October 2023

Abstract
This chapter details the various ways disease can be transmitted between organisms. Respiratory viruses such as influenza are airborne; some pathogens such as HIV and hepatitis can be transmitted through bodily fluids; some infectious diseases, such as cholera, can survive in water; and still other pathogens have evolved to use other organisms, especially blood-sucking insects and mites, as vectors to travel from one host to another. The concepts of the encounter and compatibility filters describe the competition between hosts and pathogens to enhance or reduce the pathogen’s ability to move into new hosts (the encounter filter) and replicate within them (the compatibility filter). Mathematical models help understand how pathogens spread both among hosts and within individual hosts’ bodies. Virulence, resistance, and tolerance describe the pathogen and host factors that determine how badly pathogens will compromise an infected host’s health.
Writing the constitution
Authors: Loughlin Martin 
Published: October 2023

Abstract
This chapter reviews how scholars have written about the unwritten constitution. Claiming that an Anglo-Saxon state of liberty pre-dated the Norman conquest, some explain constitutional development through continuous antagonism between liberty and authority that eventually led to intense conflicts during the 17th century. These conflicts were subsequently transcended by adopting as a new legitimizing principle the ambiguous concept of the supremacy of the Crown-in-Parliament. Thereafter, constitutional scholars like Blackstone, Dicey, and Bagehot examined how this principle is tempered by conventional understandings. Since the 20th century, the authority of these understandings has been eroded following the rise of democracy and extension of government powers, generating pressure for the official codification of constitutional rules.
Parliamentary government
Authors: Loughlin Martin 
Published: October 2023

Abstract
This chapter examines the evolving role of Parliament in the British system of government. Formed by royal will, Parliament became an established institution due to monarchical necessity and, following the civil war, when it exerted its authority over the monarch, a system of parliamentary government was instituted. With the expansion of the franchise, the Commons acquired primacy over the Lords and with the growth of big government Parliament has ceded legislative initiative to the executive. Party mechanisms now control governmental operations, leaving Parliament with responsibility for holding government to account.
Whither the constitution?
Authors: Loughlin Martin 
Published: October 2023

Abstract
This chapter discusses the continuing trajectory of constitutional development. The British constitution blends all three of the Weberian sources of legitimacy: charismatic, traditional, and rational. What has been distinctive is the extent to which governmental power has been made accountable to the people through political practice rather than legal reconstitution. But these practices are now losing their authority and with this the traditional idea of a constitution is unable any longer to provide a coherent account of the nature of British government. The judiciary has been incrementally seeking to set in place a modern arrangement expressed as a framework of fundamental law, but the political tensions this gives rise to leaves the constitution in an unsettled state.
From France
Authors: Andrew Dudley 
Published: October 2023

Abstract
This chapter explores the origins of French cinema. It starts with the Lumière brothers, who became the epicentre of a global image exchange due to their compact, multifunctional cinématographe. Meanwhile Georges Méliès spearheaded the world’s first dedicated production studio, dipping into a repertoire of magic shows, music hall turns, and science fiction. At Gaumont studios, Alice Guy is the first influential woman in world cinema adapting and honing a narrative style. Staid dramas and adaptations of classics during La Belle Époque seem pretentious and banal compared to the comedies and especially the serials of Feuillade that excited the masses and the avant-garde alike. After World War I, experimental films became a niche mode financed by patrons of Paris’ modern art and dance scene while a flagging industry still produced several magnificent silent masterpieces just before 1930.
A legacy, disputed and renewed
Authors: Andrew Dudley 
Published: October 2023

Abstract
This chapter covers the legacy of French cinema since the New Wave. Paradoxically, this national cinema is most celebrated for its disenchantment with a national synthesis. Unruly filmmakers often challenge the good taste and high-mindedness of French culture, especially in works labelled “extreme cinema” where violence and eroticism become corrosive. French art cinema has increasingly profited from outsiders, such as Abdellatif Kechiche who drew on his Tunisian background to produce La Graine et le mulet (2007). Once in the industry he further disrupted norms in Blue is the Warmest Color. Today several female directors bring a new sensibility to issues not just of gender but of race and ethnicity. Healthy for French society, this also expands cinema’s capabilities and ambitions. The chapter clarifies that French national cinema can never be stable nor achieve a synthesis, ethnic or otherwise; so it needs to be constantly refreshed. It does so most distinctively in filmmakers with New Wave roots, such as Claire Denis, Arnaud Desplechin, and Olivier Assayas, whose Clouds of Sils Maria (2014) demonstrates that genuine cinema is not a spectacle but a search for the truth following traces of the real. Genuine cinema still can surprise us.
What is imagination?
Authors: Gosetti-Ferencei Jennifer 
Published: October 2023

Abstract
This chapter introduces the history of the concept of imagination within philosophy, the human sciences, and literary theory. It shows how imagination allows escape from ordinary life while also illuminating possibilities with which we can engage reality. While imagination has been revered for its expansion of human life and its contributions to human achievement, imagination has also been blamed for disrupting our grasp or perception of reality. In this context, this chapter explains how imagination both departs from reality and affords the expression of new ideas and their subsequent integration into the world we experience. It demonstrates how we can best understand imagining as operating in multiple modes: inner imaging, pretence, hypothetical or counterfactual thinking, concrete imagining, and creativity.
Imagination in human evolution
Authors: Gosetti-Ferencei Jennifer 
Published: October 2023

Abstract
This chapter explores the influence of imagination in human evolution and its role in the emergence of human culture. It explains how approaching imagination as an evolved dimension of human consciousness requires complementing philosophical understanding with insights from other disciplines. Human cognitive evolution saw the emergence of people’s capacity for ‘seeing-as’ alongside inner representation and hypothetical thinking. From a modern perspective, prehistoric artefacts such as cave paintings, sculptures, and toys appear to express the raw vitality of early human imagination. The chapter highlights how imagination has allowed human beings to amplify, transform, and expressively reflect on their experiences of living while also enabling a symbolic humanization of the world.
Creativity from invention to wonder
Authors: Gosetti-Ferencei Jennifer 
Published: October 2023

Abstract
This chapter considers creativity as a means of negotiating reality through imagination, demonstrating how multiple modes of imagining are involved in creative thought and practice, and how creativity has in recent decades been recognized as drawing on fundamental processes of cognition. While ordinary cognition may involve creative resources, the exquisite or special creativity that can emerge in artistic, playful, and inventive thinking may diverge from ordinary cognitive habits. Drawing on aesthetic theory, this chapter discusses how cognitive play allows diversion from habitual paths of thinking while what Keats called negative capability and what art theorists describe as defamiliarization can foster wonder and tolerance for the not yet fully understood, making way for new ideas. This chapter engages examples from the mathematician and inventor Archimedes, poets Wordsworth, Yeats, and Ovid, painters Breughel and da Vinci, the Nazca geoglyphs, the music of Stravinsky, and jazz. In conclusion this chapter considers the contribution of creativity to human innovation and human happiness.
JEasyTFM: an open-source software package for the analysis of large 2D TFM data within ImageJ
Authors: Carl Philippe , Rondé Philippe 
Published: October 2023

Abstract

Motivation
Cells adhering to the extracellular matrix can sense and respond to a wide variety of chemical and physical features of the adhesive surface. Traction force microscopy (TFM) allows determining the tensile forces exerted by the cells on their substrate with high resolution.

Results
To allow broad access of this techniques to cell biology laboratories we developed JeasyTFM, an open-source ImageJ package able to process multi-color and multi-position time-lapse pictures thus suitable for the automatic analysis of large TFM data.

Availability and implementation
JEasyTFM is implemented as an ImageJ plugin and available at: http://questpharma.u-strasbg.fr/JEasyTFM.html.
An automated model annotation system (AMAS) for SBML models
Authors: Shin Woosub , Gennari John H , Hellerstein Joseph L , Sauro Herbert M 
Published: October 2023

Abstract

Motivation
Annotations of biochemical models provide details of chemical species, documentation of chemical reactions, and other essential information. Unfortunately, the vast majority of biochemical models have few, if any, annotations, or the annotations provide insufficient detail to understand the limitations of the model. The quality and quantity of annotations can be improved by developing tools that recommend annotations. For example, recommender tools have been developed for annotations of genes. Although annotating genes is conceptually similar to annotating biochemical models, there are important technical differences that make it difficult to directly apply this prior work.

Results
We present AMAS, a system that predicts annotations for elements of models represented in the Systems Biology Markup Language (SBML) community standard. We provide a general framework for predicting model annotations for a query element based on a database of annotated reference elements and a match score function that calculates the similarity between the query element and reference elements. The framework is instantiated to specific element types (e.g. species, reactions) by specifying the reference database (e.g. ChEBI for species) and the match score function (e.g. string similarity). We analyze the computational efficiency and prediction quality of AMAS for species and reactions in BiGG and BioModels and find that it has subsecond response times and accuracy between 80% and 95% depending on specifics of what is predicted. We have incorporated AMAS into an open-source, pip-installable Python package that can run as a command-line tool that predicts and adds annotations to species and reactions to an SBML model.

Availability and implementation
Our project is hosted at https://github.com/sys-bio/AMAS, where we provide examples, documentation, and source code files. Our source code is licensed under the MIT open-source license.