bluuebunny/crossref_metadata_2025_split huggingface dataset:
Unraveling the genome of Bacillus velezensis MEP218, a strain producing fengycin homologs with broad antibacterial activity: comprehensive comparative genome analysis
Authors: Medeot Daniela , Sannazzaro Analía , Estrella María Julia , Torres Tejerizo Gonzalo , Contreras-Moreira Bruno , Pistorio Mariano , Jofré Edgardo 
Published: December 2023

AbstractBacillus sp. MEP218, a soil bacterium with high potential as a source of bioactive molecules, produces mostly C16–C17 fengycin and other cyclic lipopeptides (CLP) when growing under previously optimized culture conditions. This work addressed the elucidation of the genome sequence of MEP218 and its taxonomic classification. The genome comprises 3,944,892 bp, with a total of 3474 coding sequences and a G + C content of 46.59%. Our phylogenetic analysis to determine the taxonomic position demonstrated that the assignment of the MEP218 strain to Bacillus velezensis species provides insights into its evolutionary context and potential functional attributes. The in silico genome analysis revealed eleven gene clusters involved in the synthesis of secondary metabolites, including non-ribosomal CLP (fengycins and surfactin), polyketides, terpenes, and bacteriocins. Furthermore, genes encoding phytase, involved in the release of phytic phosphate for plant and animal nutrition, or other enzymes such as cellulase, xylanase, and alpha 1–4 glucanase were detected. In vitro antagonistic assays against Salmonella typhimurium, Acinetobacter baumanii, Escherichia coli, among others, demonstrated a broad spectrum of C16–C17 fengycin produced by MEP218. MEP218 genome sequence analysis expanded our understanding of the diversity and genetic relationships within the Bacillus genus and updated the Bacillus databases with its unique trait to produce antibacterial fengycins and its potential as a resource of biotechnologically useful enzymes.
Identification and tentative removal of collagen glue in Palaeolithic worked bone objects: implications for ZooMS and radiocarbon dating
Authors: van der Sluis L. G. , McGrath K. , Thil F. , Cersoy S. , Pétillon J.-M. , Zazzo A. 
Published: December 2023

AbstractCollagen glue has been used for nearly two centuries to consolidate bone material, although its prevalence in museum collections is only now becoming visible. Identifying and removing collagen glue is crucial before the execution of any geochemical or molecular analyses. Palaeolithic bone objects from old excavations intended for radiocarbon dating were first analysed using ZooMS (Zooarchaeology by Mass Spectrometry) to identify the animal species, however peaks characteristic of both cattle and whale were discovered. Two extraction methods for ZooMS were tested to identify the authentic animal species of these objects, which revealed that these were originally whale bone objects that had been consolidated with cattle collagen glue. This is the first time animal collagen glue has been identified in archaeological remains with ZooMS, illustrating again the incredible versatility of this technique. Another technique, Fourier Transform Infrared Spectroscopy in Attenuated Total Reflectance mode (FTIR-ATR), was also tested if it could rapidly identify the presence of collagen glue in archaeological bone material, which was not the case. Two other cleaning methods were tested to remove bone glue contamination prior to radiocarbon dating, along with two modified collagen extraction methods for ZooMS. These methods were applied to bone blank samples (FmC = 0.0031 ± 0.0002, (n = 219), 47 336 ± 277 yr BP) that were experimentally consolidated with collagen glue and to the Palaeolithic bone material (ca. 15 000 and 12 000 yr BP). The experimental bone blanks produced excellent14C ages, suggesting the cleaning methods were successful, however the14C ages for some of the Palaeolithic material remained too young considering their contextual age, suggesting that the collagen glue contamination had most likely cross-linked to the authentic collagen molecule. More research is needed in order to gain a deeper understanding of the occurrence and elimination of cross-linked collagen-based glues in material from museum collections.
Deep learning based multimodal urban air quality prediction and traffic analytics
Authors: Hameed Saad , Islam Ashadul , Ahmad Kashif , Belhaouari Samir Brahim , Qadir Junaid , Al-Fuqaha Ala 
Published: December 2023

AbstractUrban activities, particularly vehicle traffic, are contributing significantly to environmental pollution with detrimental effects on public health. The ability to anticipate air quality in advance is critical for public authorities and the general public to plan and manage these activities, which ultimately help in minimizing the adverse impact on the environment and public health effectively. Thanks to recent advancements in Artificial Intelligence and sensor technology, forecasting air quality is possible through the consideration of various environmental factors. This paper presents our novel solution for air quality prediction and its correlation with different environmental factors and urban activities, such as traffic density. To this aim, we propose a multi-modal framework by integrating real-time data from different environmental sensors and traffic density extracted from Closed Circuit Television footage. The framework effectively addresses data inconsistencies arising from sensor and camera malfunctions within a streaming dataset. The dataset exhibits real-world complexities, including abrupt camera or station activations/deactivations, noise interference, and outliers. The proposed system tackles the challenge of predicting air quality at locations having no sensors or experiencing sensor failures by training a joint model on the data obtained from nearby stations/sensors using a Particle Swarm Optimization (PSO)-based merit fusion of the sensor data. The proposed methodology is evaluated using various variants of the LSTM model including Bi-directional LSTM, CNN-LSTM, and Convolutions LSTM (ConvLSTM) obtaining an improvement of 48%, 67%, and 173% for short-term, medium-term, and long-term periods, respectively, over the ARIMA model.
In situ neutron imaging of lithium-ion batteries during heating to thermal runaway
Authors: Nozaki Hiroshi , Kondo Hiroki , Shinohara Takenao , Setoyama Daigo , Matsumoto Yoshihiro , Sasaki Tsuyoshi , Isegawa Kazuhisa , Hayashida Hirotoshi 
Published: December 2023

AbstractLithium-ion batteries (LIBs) have become essential components that power most current technologies, such as smartphones and electric vehicles, thus making various safety evaluations necessary to ensure their safe use. Among these evaluations, heating tests remain the most prominent source of safety issues. However, information on the phenomena occurring inside batteries during heating has remained inaccessible. In this study, we demonstrate the first in situ neutron imaging method to observe the internal structural deformation of LIBs during heating. We developed an airtight aluminium chamber specially designed to prevent radioactive contamination during in situ neutron imaging. We successfully observed the liquid electrolyte fluctuation inside a battery sample and the deformation of the protective plastic film upon heating up to thermal runaway. Hence, this work provides the foundation for future investigations of the internal changes induced in batteries during heating tests and experiments.
Visual stimulation by extensive visual media consumption can be beneficial for motor learning
Authors: Nuernberger Matthias , Finke Kathrin , Nuernberger Lisa , Ruiz-Rizzo Adriana L. , Gaser Christian , Klingner Carsten , Witte Otto W. , Brodoehl Stefan 
Published: December 2023

AbstractIn this randomized controlled intervention trial, we investigated whether intense visual stimulation through television watching can enhance visual information processing and motor learning performance. 74 healthy young adults were trained in a motor skill with visual information processing demands while being accommodated in a controlled environment for five days. The experimental manipulation (n = 37) consisted of prolonged television watching (i.e., 8 h/day, + 62.5% on average) to induce intense exposure to visual stimulation. The control group (n = 37) did not consume visual media. The groups were compared by motor learning performance throughout the study as well as pre/post visual attention parameters and resting-state network connectivity in functional MRI. We found that the intervention group performed significantly better in the motor learning task (+ 8.21% (95%-CI[12.04, 4.31], t(70) = 4.23, p < 0.001) while showing an increased capacity of visual short-term memory (+ 0.254,t(58) = − 3.19,p = 0.002) and increased connectivity between visual and motor-learning associated resting-state networks. Our findings suggest that the human brain might enter a state of accentuated visuomotor integration to support the implementation of motor learning with visual information processing demands if challenged by ample input of visual stimulation. Further investigation is needed to evaluate the persistence of this effect regarding participants exposed to accustomed amounts of visual media consumption.Clinical Trials Registration: This trial was registered in the German Clinical Trials Register/Deutsches Register klinischer Studien (DRKS): DRKS00019955.
Gene expression profile of HCT-8 cells following single or co-infections with Cryptosporidium parvum and bovine coronavirus
Authors: Jiménez-Meléndez Alejandro , Shakya Ruchika , Markussen Turhan , Robertson Lucy J. , Myrmel Mette , Makvandi-Nejad Shokouh 
Published: December 2023

AbstractAmong the causative agents of neonatal diarrhoea in calves, two of the most prevalent are bovine coronavirus (BCoV) and the intracellular parasite Cryptosporidium parvum. Although several studies indicate that co-infections are associated with greater symptom severity, the host–pathogen interplay remains unresolved. Here, our main objective was to investigate the modulation of the transcriptome of HCT-8 cells during single and co-infections with BCoV and C. parvum. For this, HCT-8 cells were inoculated with (1) BCoV alone, (2) C. parvum alone, (3) BCoV and C. parvum simultaneously. After 24 and 72 h, cells were harvested and analyzed using high-throughput RNA sequencing. Following differential expression analysis, over 6000 differentially expressed genes (DEGs) were identified in virus-infected and co-exposed cells at 72 hpi, whereas only 52 DEGs were found in C. parvum-infected cells at the same time point. Pathway (KEGG) and gene ontology (GO) analysis showed that DEGs in the virus-infected and co-exposed cells were mostly associated with immune pathways (such as NF-κB, TNF-α or, IL-17), apoptosis and regulation of transcription, with a more limited effect exerted by C. parvum. Although the modulation observed in the co-infection was apparently dominated by the virus, over 800 DEGs were uniquely expressed in co-exposed cells at 72 hpi. Our findings provide insights on possible biomarkers associated with co-infection, which could be further explored using in vivo models.
Changes in mosquito species and blood meal composition associated with adulticide applications
Authors: Kim Dongmin , Burkett-Cadena Nathan D. , Reeves Lawrence E. 
Published: December 2023

AbstractAlthough adulticide application is a pillar in the integrated management of nuisance and vector mosquitoes, non-target effects of adulticide applications within ecosystems are a substantial concern. However, the impacts of adulticide applications on non-target organisms are not necessarily detrimental, and in some cases, may provide benefits to certain organisms or wildlife. Here, we hypothesized that adulticide applications have beneficial non-target impacts on vertebrate wildlife through reduced biting pressure. To test this, we collected mosquitoes from ultra-low volume Permanone-treated (intervention) and untreated (reference) areas and assessed mosquito abundance and diversity, and abundance of blood-engorged female mosquitoes. We performed DNA barcoding analysis on mosquito blood meals to identify host species. Our results demonstrated a significant reduction in mosquito abundance by 58.9% in the intervention areas, taking into account the reduction in reference areas. Consequently, this decline led to a 64.5% reduction in the abundance of blood-engorged females. We also found a temporal dynamic of mosquito composition driven by mosquito control actions in which different mosquito species became dominant at treated sites while composition at reference areas remained similar during the same period. The present study suggests that the beneficial effects of mosquito control treatments for humans extend to other vertebrates, which represents an unstudied and rarely recognized non-target impact.
Low-cost photocatalytic membrane modified with green heterojunction TiO2/ZnO nanoparticles prepared from waste
Authors: Mousa Sahar A. , Abdallah Heba , Khairy S. A. 
Published: December 2023

AbstractThe combination of photocatalysis and membrane procedures represents a promising approach for water treatment. This study utilized green synthesis methods to produce TiO2 nanoparticles (NPs) using Pomegranate extract and ZnO nanoparticles using Tangerine extract. These nanoparticles were then incorporated into a polyvinyl chloride (PVC) nanocomposite photocatalytic membrane. Different devices were used to examine the properties of nanocomposite membranes. The prepared membranes' morphology was examined using atomic force microscopy (AFM) and field emission scanning electron microscopy (FESEM). The hydrophilicity of the membrane surface was assessed through the measurement of contact angle, while the crystal structure and chemical bonding were analyzed using Raman and Fourier transform infrared spectroscopy (FT-IR). The study also encompassed an examination of the mechanical properties. The hydrophilicity of the modified membrane exhibited a significant improvement. Additionally, there was an observed increase in both the pure water flux and rejection values. The photocatalytic activity of the membrane was found to be enhanced when exposed to sunlight as compared to when kept in the dark. The TiO2/ZnO nanocomposites membrane exhibited the highest level of photocatalytic degradation, achieving a rejection rate of 98.7% compared to the unmodified membrane. Therefore, it was determined that the TiO2/ZnO nanocomposites membrane exhibited superior performance to the other membranes assessed. The potential utility of our research lies in its application within the water treatment industry, specifically as an effective technique for modifying PVC membranes.
The armoured cuticle of the black soldier fly Hermetia illucens
Authors: Rebora Manuela , Salerno Gianandrea , Piersanti Silvana , Saitta Valerio , Morelli Venturi Diletta , Li Chuchu , Gorb Stanislav 
Published: December 2023

AbstractWe characterise in detail the larval and pupal cuticle of the black soldier fly Hermetia illucens L. (Diptera: Stratiomyidae), a key insect species in circular economy. In particular, we focus on ultrastructure using scanning and transmission electron microscopy, material characterization and composition (elements and minerals) with confocal laser scanning microscope, energy dispersive X-ray microanalysis, powder X-ray diffraction and mechanical properties with nanoindentation measurements. Calcium carbonate crystallizes on the epicuticle as blocks of calcite in the pupal cuticle. Calcium carbonate granules are stored in two specialised Malpighian tubules. CaCO3 is already present in the cuticle of young larval instars, but it is mainly in the form of amorphous calcium carbonate while the amount of calcite increases during larval development. The presence of calcite leads to cuticle hardening. Larval and pupal cuticles contain large amounts of resilin which guarantee cuticle flexibility.
Menahydroquinone-4 may play a key role in regulating CCL5 expression induced by epidermal growth factor receptor inhibitors
Authors: Goto Shotaro , Setoguchi Shuichi , Watase Daisuke , Yamakawa Hirofumi , Yamada Ayano , Koga Mitsuhisa , Matsuo Koichi , Matsunaga Kazuhisa , Karube Yoshiharu , Takata Jiro 
Published: December 2023

AbstractEpidermal growth factor receptor (EGFR) inhibitors frequently cause severe skin rash as a side effect, which is a critical burden for patients who continuously receive drug treatments. Several recent clinical trials have shown that vitamin K is effective against these side effects; however, the underlying mechanisms remain unclear. EGFR inhibitors induce C–C motif chemokine ligand 5 (CCL5) in dermopathy. We hypothesized that menahydroquinone-4 (MKH), the active form of menaquinone-4 (MK-4, vitamin K2(20)), supplied by biosynthesis or external delivery, is essential for the suppressive effect on CCL5. The aim of this study was to explore the underlying mechanisms governing the relieving effects of MKH against skin rashes caused by EGFR inhibitors. The responses generated by EGFR inhibitors and the effect of MKH derivatives (two ester derivatives and MK-4) on them were evaluated using human skin cell lines (HaCaT and HSC-1). EGFR inhibitors downregulated UbiA prenyltransferase domain-containing protein-1 (UBIAD1, MKH synthetase) expression and MKH biosynthesis. Knockdown of UBIAD1 or γ-glutamyl carboxylase and treatment with warfarin upregulated CCL5 expression. MKH derivatives suppressed the CCL5 expression induced by EGFR inhibitors. Our data strongly suggest that MKH is involved in suppressing CCL5 expression and alleviating the skin damage caused by EGFR inhibitors.
Utilizing magnetic xanthan gum nanocatalyst for the synthesis of acridindion derivatives via functionalized macrocycle Thiacalix[4]arene
Authors: Hassanzadeh-Afruzi Fereshte , Salehi Mohammad Mehdi , Ranjbar Ghazaleh , Esmailzadeh Farhad , Hanifehnejad Peyman , Azizi Mojtaba , Eshrati yeganeh Faten , Maleki Ali 
Published: December 2023

AbstractAn effective method for synthesizing acridinedione derivatives using a xanthan gum (XG), Thiacalix[4]arene (TC4A), and iron oxide nanoparticles (IONP) have been employed to construct a stable composition, which is named Thiacalix[4]arene-Xanthan Gum@ Iron Oxide Nanoparticles (TC4A-XG@IONP). The process used to fabricate this nanocatalyst includes the in-situ magnetization of XG, its amine modification by APTES to get NH2-XG@IONP hydrogel, the synthesis of TC4A, its functionalization with epichlorohydrine, and eventually its covalent attachment onto the NH2-XG@IONP hydrogel. The structure of the TC4A-XG@IONP was characterized by different analytical methods including Fourier-transform infrared spectroscopy, X-Ray diffraction analysis (XRD), Energy Dispersive X-Ray, Thermal Gravimetry analysis, Brunauer–Emmett–Teller, Field Emission Scanning Electron Microscope and Vibration Sample Magnetomete. With magnetic saturation of 9.10 emu g−1 and ~ 73% char yields, the TC4As-XG@IONP catalytic system demonstrated superparamagnetic property and high thermal stability. The magnetic properties of the TC4A-XG@IONP nanocatalyst system imparted by IONP enable it to be conveniently isolated from the reaction mixture by using an external magnet. In the XRD pattern of the TC4As-XG@IONP nanocatalyst, characteristic peaks were observed. This nanocatalyst is used as an eco-friendly, heterogeneous, and green magnetic catalyst in the synthesis of acridinedione derivatives through the one-pot pseudo-four component reaction of dimedone, various aromatic aldehydes, and ammonium acetate or aniline/substituted aniline. A combination of 10 mg of catalyst (TC4A-XG@IONP), 2 mmol of dimedone, and 1 mmol of aldehyde at 80 °C in a ethanol at 25 mL round bottom flask, the greatest output of acridinedione was 92% in 20 min.This can be attributed to using TC4A-XG@IONP catalyst with several merits as follows: high porosity (pore volume 0.038 cm3 g−1 and Pore size 9.309 nm), large surface area (17.306 m2 g−1), three dimensional structures, and many catalytic sites to active the reactants. Additionally, the presented catalyst could be reused at least four times (92–71%) with little activity loss, suggesting its excellent stability in this multicomponent reaction. Nanocatalysts based on natural biopolymers in combination with magnetic nanoparticles and macrocycles may open up new horizons for researchers in the field.
Solutions for recycling emerging wind turbine blade waste in China are not yet effective
Authors: Yang Juhua , Meng Fanran , Zhang Lixiao , McKechnie Jon , Chang Yuan , Ma Bingran , Hao Yan , Li Xiang , Pender Kyle , Yang Liu , Leeke Gary A. , Cullen Jonathan M. 
Published: December 2023

AbstractWind power supply chains are evolving as markets expand to reach climate goals. With the largest installed wind power capacity globally, China must deal with increasing composite turbine waste and anticipate its associated costs. Here we predict the quantity and composition of wind turbine blade waste based on historic deployment. A high-resolution database containing 14 turbine capacities (150–5500 kilowatts) was compiled based on 104 turbine models. The environmental and financial costs of waste treatment options were evaluated using a bottom-up approach. Based on current installations and future projections, 7.7 to 23.1 million tonnes of blade waste will be generated in China by 2050. Technologies exist to recycle glass fibre from blade waste, but these solutions vary in level of maturity and are not always commercially available, cost-competitive, or environmentally sustainable. Our findings can inform decision-makers in governments and industry on the pathways to carbon neutrality.
Towards equity and justice in ocean sciences
Authors: de Vos Asha , Cambronero-Solano Sergio , Mangubhai Sangeeta , Nefdt Leila , Woodall Lucy C. , Stefanoudis Paris V. 
Published: December 2023

AbstractThe global scientific community is currently going through a self-reckoning in which it is questioning and re-examining its existing practices, many of which are based on colonial and neo-colonial perceptions. This is particularly acute for the ocean research community, where unequal and unbalanced international collaborations have been rife. Consequently, numerous discussions and calls have been made to change the current status quo by developing guidelines and frameworks addressing the key issues plaguing our community. Here, we provide an overview of the key topics and issues that the scientific community has debated over the last three to four years, with an emphasis on ocean research, coupled with actions per stakeholder groups (research community, institutions, funding agencies, and publishers). We also outline some key discussions that are currently missing and suggest a path forward to tackle these gaps. We hope this contribution will further accelerate efforts to bring more equity and justice into ocean sciences.