bluuebunny/crossref_metadata_2025_split huggingface dataset:
3He spin-echo scattering indicates hindered diffusion of isolated water molecules on graphene-covered Ir(111)
Authors: Kyrkjebø Signe , Cassidy Andrew , Lambrick Sam , Jardine Andrew , Holst Bodil , Hornekær Liv 
Published: October 2023

The dynamics of water diffusion on carbon surfaces are of interest in fields as diverse as furthering the use of graphene as an industrial-coating technology and understanding the catalytic role of carbon-based dust grains in the interstellar medium. The early stages of water–ice growth and the mobility of water adsorbates are inherently dependent on the microscopic mechanisms that facilitate water diffusion. Here, we use 3He spin-echo quasi-inelastic scattering to probe the microscopic mechanisms responsible for the diffusion of isolated water molecules on graphene-covered and bare Ir(111). The scattering of He atoms provides a non-invasive and highly surface-sensitive means to measure the rate at which absorbates move around on a substrate at very low coverage. Our results provide an approximate upper limit on the diffusion coefficient for water molecules on GrIr(111) of <10−12 m2/s, an order of magnitude lower than the coefficient that describes the diffusion of water molecules on the bare Ir(111) surface. We attribute the hindered diffusion of water molecules on the GrIr(111) surface to water trapping at specific areas of the corrugated moiré superstructure. Lower mobility of water molecules on a surface is expected to lead to a lower ice nucleation rate and may enhance the macroscopic anti-icing properties of a surface.
The geochemical characteristics of Cretaceous volcanics in southern Hainan Island and implications for tectonic evolution in the South China Sea
Authors: Liu Yang , Fang Nianqiao , Wang Zhongbo 
Published: October 2023

The southeastern Eurasian plate, where the South China Sea (SCS) is located, lies in a complex tectonic setting between the Pacific and Tethys tectonic belts. It is widely accepted that the tectonics of the SCS area were influenced by subduction in the late Mesozoic, but there is still controversy over whether it was paleo-Pacific subduction or Tethyan subduction. Volcanic activity in the south of Hainan Island was intense during the Cretaceous, and geochemical analysis of the collected basaltic andesite, andesite and rhyolite samples in this study indicate those intermediate-acid series igneous rocks are high-K calc-alkaline or calc-alkaline. Some andesites have high MgO contents and Mg# values (2.04–5.34 wt% and 36.83–55.29; Mg# = 100× Mg2+/(Mg2+ + TFe2+). Light rare earth elements (LREEs) and large ion lithophile elements (LILEs) are enriched in all the samples, but high field strength elements (HFSEs) are depleted. The negative Eu anomalies are more obvious in the rhyolites than andesites. The geochemical characteristics of the volcanic arc igneous rocks show that the mid-Cretaceous tectonic setting of Hainan Island can be classified as an Andean active continental margin. During the mid-Cretaceous, intermediate volcanism occurred in Hainan Island and its adjacent areas. The zircon-saturation temperatures of the acid volcanic rocks in study area exhibit relatively low values (ranging from 746°C–790°C). Unlike igneous rocks forming in the coastal area east of the South China Block at the same time, no A-type granitoids with alkaline dark minerals appear in Hainan Island. During the late Mesozoic, the western SCS, where Hainan Island was located, may not have been affected by the subduction of the paleo-Pacific Plate, but rather Neotethyan subduction which dominated the Cretaceous magmatic and tectonic activities along the western margin of the SCS. This finding helps to understand the late Mesozoic tectonic evolution of the southeastern edge of the Eurasian plate.
An integrated approach of bioleaching-enhanced electrokinetic remediation of heavy metals from municipal waste incineration fly ash using Acidithiobacillus spp
Authors: Narenkumar Jayaraman , Sathishkumar Kuppusamy , Das Bhaskar , Rajasekar Aruliah , Rajakrishnan R. , Rajamohan Rajaram , Malik Tabarak 
Published: October 2023

Introduction: Municipal solid waste (MSW) incineration fly ash is a harmful residue formed during the incineration process. It contains high concentrations of hazardous heavy metals, such as lead, zinc, aluminum, and iron.Methodology: In this study, bioleaching integrated with an electrokinetic approach for heavy metal remediation from MSW incineration fly ash using Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans bacteria was tested.Results and discussion: The physicochemical properties of fly ash included a particle size of 26.1 μm, with the presence of heavy metals. A. ferrooxidans and A. thiooxidans produced sulphuric acid (0.0289 M and 0.0352 M) during the proliferation; this acid enhances the bioleaching of heavy metals from fly ash. The results of an integrated approach showed an 85%, 47%, 92%, 85%, 46%, 67% 11%, and 55% removal of the heavy metals K, Na, Ca, Mg, Al, Zn, Pb, and Mg, respectively, in the presence of A. ferrooxidans. Overall, these results evidenced that heavy metals were completely removed from the fly ash using an integrated approach. Therefore, this integrated approach can be used as an effective heavy metal removal method for treating fly ash in MSW.
Precise aboveground biomass estimation of plantation forest trees using the novel allometric model and UAV-borne LiDAR
Authors: Lin Jiayuan , Chen Decao , Yang Shuai , Liao Xiaohan 
Published: October 2023

IntroductionPlantation forest is an important component of global forest resources. The accurate estimation of tree aboveground biomass (AGB) in plantation forest is of great significance for evaluating the carbon sequestration capacity. In recent years, UAV-borne LiDAR has been increasingly applied to forest survey, but the traditional allometric model for AGB estimation cannot be directly used without the diameter at breast height (DBH) of individual trees. Therefore, it is practicable to construct a novel allometric model incorporating the crown structure parameters, which can be precisely extracted from UAV LiDAR data. Additionally, the reduction effect of adjacent trees on crown area (Ac) should be taken into account.MethodsIn this study, we proposed an allometric model depending on the predictor variables of Ac and trunk height (H). The UAV-borne LiDAR was utilized to scan the sample plot of dawn redwood (DR) trees in the test site. The raw point cloud was first normalized and segmented into individual trees, whose Acs and Hs were sequentially extracted. To mitigate the effects of adjacent trees, the initial Acs were corrected to refer to the potential maximum Acs under undisturbed growth conditions. Finally, the corrected Acs (Acc) and Hs were input into the constructed allometric model to achieve the AGBs of DR trees.Results and discussionAccording to accuracy assessment, coefficient of determination (R2) and root mean square error (RMSE) of extracted Hs were 0.9688 and 0.51 m; R2 and RMSE of calculated AGBs were 0.9432 and 10.91 kg. The unrestricted growth parts of the tree crowns at the edge of a plantation forest could be used to derive the potential maximum Ac. Compared with the allometric models for AGB estimation relying only on trunk H or on initial Ac and H, the novel allometric model demonstrated superior performance in estimating the AGBs of trees in a plantation forest.
Non-contrast computed tomography-based radiomics for staging of connective tissue disease-associated interstitial lung disease
Authors: Qin Songnan , Jiao Bingxuan , Kang Bing , Li Haiou , Liu Hongwu , Ji Congshan , Yang Shifeng , Yuan Hongtao , Wang Ximing 
Published: October 2023

Rationale and introductionIt is of significance to assess the severity and predict the mortality of patients with connective tissue disease-associated interstitial lung disease (CTD-ILD). In this double-center retrospective study, we developed and validated a radiomics nomogram for clinical management by using the ILD-GAP (gender, age, and pulmonary physiology) index system.Materials and methodsPatients with CTD-ILD were staged using the ILD-GAP index system. A clinical factor model was built by demographics and CT features, and a radiomics signature was developed using radiomics features extracted from CT images. Combined with the radiomics signature and independent clinical factors, a radiomics nomogram was constructed and evaluated by the area under the curve (AUC) from receiver operating characteristic (ROC) analyses. The models were externally validated in dataset 2 to evaluate the model generalization ability using ROC analysis.ResultsA total of 245 patients from two clinical centers (dataset 1, n = 202; dataset 2, n = 43) were screened. Pack-years of smoking, traction bronchiectasis, and nine radiomics features were used to build the radiomics nomogram, which showed favorable calibration and discrimination in the training cohort {AUC, 0.887 [95% confidence interval (CI): 0.827–0.940]}, the internal validation cohort [AUC, 0.885 (95% CI: 0.816–0.922)], and the external validation cohort [AUC, 0.85 (95% CI: 0.720–0.919)]. Decision curve analysis demonstrated that the nomogram outperformed the clinical factor model and radiomics signature in terms of clinical usefulness.ConclusionThe CT-based radiomics nomogram showed favorable efficacy in predicting individual ILD-GAP stages.
Transcriptomic analysis identifies lactoferrin-induced quiescent circuits in neonatal macrophages
Authors: Eigenschink Michael , Wessely Isabelle , Dijmarescu Marco , Förster-Waldl Elisabeth , Farr Alex , Kiss Herbert , Berger Angelika , Wisgrill Lukas 
Published: October 2023

IntroductionUpon birth, a hitherto naïve immune system is confronted with a plethora of microbial antigens due to intestinal bacterial colonization. To prevent excessive inflammation and disruption of the epithelial barrier, physiological mechanisms must promote immune-anergy within the neonatal gut. As high concentrations of human lactoferrin (hLF), a transferrin glycoprotein shown to modulate macrophage function, are frequently encountered in colostrum, its direct interaction with intestinal macrophages may satisfy this physiological need. Thus, the primary objective of this study was to investigate transcriptional changes induced by human lactoferrin in neonatal monocyte-derived macrophages.MethodsCord blood-derived monocytes were differentiated with M-CSF in presence or absence of 500 µg/mL hLF for 7 days and afterwards stimulated with 1 ng/mL LPS or left untreated. RNA was then isolated and subjected to microarray analysis.ResultsDifferentiation of cord blood-derived monocytes in presence of hLF induced a distinct transcriptional program defined by cell cycle arrest in the G2/M phase, induction of IL-4/IL-13-like signaling, altered extracellular matrix interaction, and enhanced propensity for cell-cell interaction. Moreover, near-complete abrogation of transcriptional changes induced by TLR4 engagement with LPS was observed in hLF-treated samples.DiscussionThe global transition towards an M2-like homeostatic phenotype and the acquisition of quiescence elegantly demonstrate the ontogenetical relevance of hLF in attenuating pro-inflammatory signaling within the developing neonatal intestine. The marked anergy towards proinflammatory stimuli such as LPS further underlines the glycoprotein’s potential therapeutic relevance.
Differential levels of anti-Mycobacterium tuberculosis-specific IgAs in saliva of household contacts with latent tuberculosis infection
Authors: Ruiz-Tagle Cinthya , Naves Rodrigo , García Patricia , Günther Anna , Schneiderhan-Marra Nicole , Balcells María Elvira 
Published: October 2023

IntroductionMucosal immunity is strongly elicited in early stages of many respiratory and enteric infections; however, its role in tuberculosis pathogenesis has been scarcely explored. We aimed to investigate Mycobacterium tuberculosis (Mtb) specific IgA levels in saliva in different stages of latent Tuberculosis Infection (TBI).MethodologyA multiplex bead-based Luminex immunoassay was developed to detect specific IgA against 12 highly immunogenic Mtb antigens. A prospective cohort of household contacts (&gt;14 years) of pulmonary TB cases was established in Santiago, Chile. Contacts were classified as Mtb-infected or not depending on serial interferon-γ release assay results. Saliva samples were collected and tested at baseline and at a 12-week follow-up.ResultsMtb-specific IgA was detectable at all visits in all participants (n = 168), including the “non-Mtb infected” (n = 64). Significantly higher median levels of IgA were found in the “Mtb infected” compared to the uninfected for anti-lipoarabinomannan (LAM) (110 vs. 84.8 arbitrary units (AU), p &lt; 0.001), anti-PstS1 (117 vs. 83 AU, p &lt; 0.001), anti-Cell Membrane Fraction (CMF) (140 vs. 103 AU, p &lt; 0.001) and anti-Culture Filtrate Proteins (CFP) (median 125 vs. 96 AU, p &lt; 0.001), respectively. Nonetheless, the discriminatory performance of these specific mucosal IgA for TBI diagnosis was low.ConclusionSaliva holds Mtb-specific IgA against several antigens with increased levels for anti-LAM, anti-PstS1, anti-CMF and anti-CFP found in household contacts with an established TBI. The role of these mucosal antibodies in TB pathogenesis, and their kinetics in different stages of Mtb infection merits further exploring.
Plant resistance to tomato yellow leaf curl virus is enhanced by Bacillus amyloliquefaciens Ba13 through modulation of RNA interference
Authors: Guo Qiao , Sun Yifan , Ji Chenglong , Kong Zirong , Liu Zhe , Li Yulong , Li Yunzhou , Lai Hangxian 
Published: October 2023

IntroductionTomato yellow leaf curl virus (TYLCV), which is a typical member of the genus Begomovirus, causes severe crop yield losses worldwide. RNA interference (RNAi) is an important antiviral defense mechanism in plants, but whether plant beneficial microbes used as biocontrol agents would modulate RNAi in defense against TYLCV remains unclear.MethodsHere, we employed whole-transcriptome, bisulfite, and small RNA sequencing to decipher the possible role of Bacillus amyloliquefaciens Ba13 as a bacterial biocontrol agent against TYLCV in RNAi modulation.ResultsPotted tomato plants were exposed to whiteflies for natural viral infection 14 days after bacterial inoculation. Compared with non-inoculated controls, the abundance of TYLCV gene in the leaves of inoculated plants decreased by 70.1% at 28 days post-infection, which mirrored the pattern observed for plant disease index. The expression of the ARGONAUTE family genes (e.g., AGO3, AGO4, AGO5, and AGO7) involved in antiviral defense markedly increased by 2.44–6.73-fold following bacterial inoculation. The methylation level at CpG site 228 (in the open reading frame region of the RNA interference suppressing gene AV2) and site 461 (in the open reading frame regions of AV1 and AV2) was 183.1 and 63.0% higher in inoculated plants than in non-inoculated controls, respectively. The abundances of 10 small interfering RNAs matched to the TYLCV genome were all reduced in inoculated plants, accompanied by enhancement of photosystem and auxin response pathways.DiscussionThe results indicate that the application of Ba. amyloliquefaciens Ba13 enhances plant resistance to TYLCV through RNAi modulation by upregulating RNAi-related gene expression and enhancing viral genome methylation.
Prevalence and molecular epidemiology of mcr-mediated colistin-resistance Escherichia coli from healthy poultry in France after national plan to reduce exposure to colistin in farm
Authors: Perrin-Guyomard Agnès , Houée Paméla , Lucas Pierrick , Felten Arnaud , Le Devendec Laetitia , Chauvin Claire , Kempf Isabelle 
Published: October 2023

IntroductionWithin the 2007–2014 programme for the surveillance of antimicrobial resistance (AMR) in livestock in France, mcr-1 prevalence average in commensal Escherichia coli was found to be 5.9% in turkeys and 1.8% in broilers, indicating that mobile colistin resistance had spread in farm animals. In 2017, the French national Ecoantibio2 plan was established to tackle AMR in veterinary medicine, with the objective of a 50% reduction in exposure to colistin in farm animals within 5 years (from 2014–2015 to 2020). Our objective was to update data concerning the prevalence and molecular epidemiology of colistin resistance, in consideration of colistin sales in poultry production in France.MethodsAntimicrobial susceptibility of commensal E. coli isolated from broilers and turkeys at slaughterhouse was determined by broth micro-dilution. The mcr genes were screened by polymerase chain reaction (PCR). Whole genome sequencing (WGS) was used to investigate the genetic diversity of colistin-resistant isolates. Transformation experiments enabled identification of the mcr-bearing plasmid replicon types. The correlation between prevalence of colistin resistance and colistin usage data was explored statistically.Results and discussionIn 2020, in France, the resistance prevalence to colistin in poultry production was 3% in turkeys and 1% in broilers, showing a significant highly positive correlation with a −68% decrease of poultry exposure to colistin since 2014. Only the mcr-1 gene was detected among the colistin-resistant E. coli. More than 80% of isolates are multi-drug resistant with 40% of isolates originating from turkeys and 44% originating from broilers co-resistant to the critically important antimicrobial ciprofloxacin. Most of the strains had no clonal relationship. The mcr gene was located in different plasmid types, carrying various other AMR genes. The decrease in colistin resistance among poultry in France can be considered a positive outcome of the national action plans for reduced colistin usage.
Loaded delta-hemolysin shapes the properties of Staphylococcus aureus membrane vesicles
Authors: Chen Juan , Lv Yuhuan , Shang Weilong , Yang Yi , Wang Yuting , Hu Zhen , Huang Xiaonan , Zhang Rong , Yuan Jizhen , Huang Jingbin , Rao Xiancai 
Published: October 2023

BackgroundMembrane vesicles (MVs) are nanoscale vesicular structures produced by bacteria during their growth in vitro and in vivo. Some bacterial components can be loaded in bacterial MVs, but the roles of the loaded MV molecules are unclear.MethodsMVs of Staphylococcus aureus RN4220 and its derivatives were prepared. Dynamic light scattering analysis was used to evaluate the size distribution, and 4D-label-free liquid chromatography–tandem mass spectrometry analysis was performed to detect protein composition in the MVs. The site-mutation S. aureus RN4220-Δhld and agrA deletion mutant RN4220-ΔagrA were generated via allelic replacement strategies. A hemolysis assay was performed with rabbit red blood cells. CCK-8 and lactate dehydrogenase release assays were used to determine the cytotoxicity of S. aureus MVs against RAW264.7 macrophages. The serum levels of inflammatory factors such as IL-6, IL-1β, and TNFα in mice treated with S. aureus MVs were detected with an enzyme-linked immunosorbent assay kit.ResultsDelta-hemolysin (Hld) was identified as a major loaded factor in S. aureus MVs. Further study showed that Hld could promote the production of staphylococcal MVs with smaller sizes. Loaded Hld affected the diversity of loaded proteins in MVs of S. aureus RN4220. Hld resulted in decreased protein diversity in MVs of S. aureus. Site-mutation (RN4220-Δhld) and agrA deletion (RN4220-ΔagrA) mutants produced MVs (ΔhldMVs and ΔagrAMVs) with a greater number of bacterial proteins than those derived from wild-type RN4220 (wtMVs). Moreover, Hld contributed to the hemolytic activity of wtMVs. Hld-loaded wtMVs were cytotoxic to macrophage RAW264.7 cells and could stimulate the production of inflammatory factor IL-6 in vivo.ConclusionThis study presented that Hld was a major loaded factor in S. aureus MVs, and the loaded Hld played vital roles in the MV-property modification.
Combination of Walnut Peptide and Casein Peptide alleviates anxiety and improves memory in anxiety mices
Authors: Li Qinxi , Jia Xiuzhen , Zhong Qixing , Zhong Zhihui , Wang Yu , Tang Cheng , Zhao Bangcheng , Feng Haotian , Hao Jingyu , Zhao Zifu , He Jian , Zhang Yingqian 
Published: October 2023

IntroductionAnxiety disorders continue to prevail as the most prevalent cluster of mental disorders following the COVID-19 pandemic, exhibiting substantial detrimental effects on individuals’ overall well-being and functioning. Even after a search spanning over a decade for novel anxiolytic compounds, none have been approved, resulting in the current anxiolytic medications being effective only for a specific subset of patients. Consequently, researchers are investigating everyday nutrients as potential alternatives to conventional medicines. Our prior study analyzed the antianxiety and memory-enhancing properties of the combination of Walnut Peptide (WP) and Casein Peptide (CP) in zebrafish.Methods and ResultsBased on this work, our current research further validates their effects in mice models exhibiting elevated anxiety levels through a combination of gavage oral administration. Our results demonstrated that at 170 + 300 mg human dose, the WP + CP combination significantly improved performances in relevant behavioral assessments related to anxiety and memory. Furthermore, our analysis revealed that the combination restores neurotransmitter dysfunction observed while monitoring Serotonin, gamma-aminobutyric acid (GABA), dopamine (DA), and acetylcholine (ACh) levels. This supplementation also elevated the expression of brain-derived neurotrophic factor mRNA, indicating protective effects against the neurological stresses of anxiety. Additionally, there were strong correlations among behavioral indicators, BDNF (brain-derived neurotrophic factor), and numerous neurotransmitters.ConclusionHence, our findings propose that the WP + CP combination holds promise as a treatment for anxiety disorder. Besides, supplementary applications are feasible when produced as powdered dietary supplements or added to common foods like powder, yogurt, or milk.
Long-term survival with a combination of immunotherapy, anti-angiogenesis, and traditional radiotherapy in brain metastatic small cell lung cancer: a case report
Authors: Long Yan-yan , Chen Jing , Xie Yue , Wang Ying , Wu Yong-zhong , Xv Ying , Weng Ke-gui , Zhou Wei 
Published: October 2023

PurposeBrain metastases (BMs) are common in Small Cell Lung Cancer (SCLC), but the prognosis is very poor. Currently, there is no standard of care on what constitutes optimal treatment, and there is no consensus regarding maintenance therapy in SCLC.Case descriptionWe report the case of a 55-year-old man with advanced SCLC. After the initial diagnosis, he received routine chemotherapy and chest radiotherapy but developed brain metastases with 2 lesions seven months later. We used an effective combination therapy consisting of the antiangiogenic inhibitor, Anlotinib and whole-brain radiotherapy. We then administered anti-PD-L1 immunotherapy Atezolizumab in combination with Anlotinib as long-term maintenance therapy. Twelve months later, there was a progression in one of the brain metastases. The patient underwent further stereotactic radiotherapy (SRT) for the lesion. However, after four months of treatment with SRT, the lesion began to gradually grow in size. The patient underwent surgical resection of the lesion, which confirmed radioactive brain necrosis. After a full 3-year course of anti-PD-L1 therapy, the patient discontinued immunotherapy and was administered only Anlotinib as maintenance. At the time of writing up this report, the patient was alive and the overall survival reached 41 months after the onset of BM.ConclusionThis indicated a potential synergistic effect of combined immunotherapy and antiangiogenic targeted therapy with local radiotherapy in patients with BM-SCLC and can provide directions for future clinical decisions.