bluuebunny/crossref_metadata_2025_split huggingface dataset:
Early end of embryonic diapause and overall reproductive activity in roe deer populations from Bavaria
Authors: Ehrmantraut C. , Wild T. , Dahl S.-A. , Wagner N. , König A. 
Published: October 2023

Context According to the established, older literature, the embryonic diapause (ED) in roe deer ends in late December. In many other species groups, phenological phases are shifting as a result of climatic changes. Whether this is the case in roe deer for the period of ED has not yet been explicitly investigated. Aim The aim of this study was to obtain an up-to-date overview of the reproduction of roe deer in Bavaria, particularly with regard to climate change. Methods For this purpose, uterus samples were taken from roe deer aged at least 1 year between September and January and examined macroscopically. The samples were collected during regular hunting activities in Bavaria in the years 2017–2020. Key results A large proportion of the female roe deer examined was found to have been already engaged in reproduction. In 98% of the animals, Corpora lutea (CL) were present in the ovaries. Adult does had significantly more CL than did subadult does just reaching sexual maturity. In 75 roe deer does, 128 embryos, in total, were detected. On average, 1.67 embryos were found per doe with visible embryos. Of these does, 30% carried a single embryo, 67% were bearing twins and 3% were bearing triplets. The animals with visible embryos ranged in age from 1 to 12 years. In a few cases, ED was already completed in November or early December. By the end of the hunting season, a correspondingly wide variety of developmental stages of embryos was visible. Our study suggests potential indications that older animals or those with a higher body mass end ED earlier. Conclusions Overall, the results indicated vigorous reproductive activity in the study area. The results showed that some individuals already end the ED in November or early December, so they may adapt to an earlier onset of the vegetation period. In contrast, we found a few individuals that ended the ED during January, which illustrates the temporal range of the ED. Implications Whether the early end of diapause in these roe deer is a reaction to climatic changes or whether there are other underlying causes is something that requires further investigation.
Fucose modifies short chain fatty acid and H2S formation through alterations of microbial cross-feeding activities
Authors: Høgsgaard Karina , Vidal Natalia P , Marietou Angeliki , Fiehn Oliver Gam , Li Qing , Bechtner Julia , Catalano Jacopo , Martinez Mario M , Schwab Clarissa 
Published: October 2023

Abstract
Algae are a rich but unexplored source of fibers with the potential to contribute to the next generation of prebiotics. The sulfated brown algae polysaccharide, fucoidan, is mainly composed of the deoxy-hexose L-fucose, which can be metabolized to 1,2-propanediol (1,2-PD) or lactate by gut microbes as precursors of propionate and butyrate. It was the aim of this study to investigate the impact of fucoidan on the fermentation capacity of the fecal microbiota and to compare to fucose. In batch fermentations of fecal microbiota collected from 17 donor samples, fucose promoted the production of propionate while no consistent effect was observed for commercial fucoidan and Fucus vesiculosus extract prepared in this study containing laminarin and fucoidan. H2S production was detected under all tested conditions, and levels were significantly lower in the presence of fucose in a dose-dependent manner. The addition of high fucose levels led to higher relative abundance of microbial 1,2-PD and lactate cross-feeders. Our results highlight that fucose and not fucoidan addition impacted fermentation capacity and increased the proportions of propionate and butyrate, which allows for precise modulation of intestinal microbiota activity.
Non-saccharomyces yeast probiotics: revealing relevance and potential
Authors: Vergara Silvia Cristina , Leiva María José , Mestre María Victoria , Vazquez Fabio , Nally María Cristina , Maturano Yolanda Paola 
Published: October 2023

Abstract
Non-Saccharomyces yeasts are unicellular eukaryotes that play important roles in diverse ecological niches. In recent decades, their physiological and morphological properties have been reevaluated and reassessed, demonstrating the enormous potential they possess in various fields of application. Non-Saccharomyces yeasts have gained relevance as probiotics, and in vitro and in vivo assays are very promising and offer a research niche with novel applications within the functional food and nutraceutical industry. Several beneficial effects have been described, such as antimicrobial and antioxidant activities and gastrointestinal modulation and regulation functions. In addition, several positive effects of bioactive compounds or production of specific enzymes have been reported on physical, mental and neurodegenerative diseases as well as on the organoleptic properties of the final product. Other points to highlight are the multiomics as a tool to enhance characteristics of interest within the industry; as well as microencapsulation offer a wide field of study that opens the niche of food matrices as carriers of probiotics; in turn, non-Saccharomyces yeasts offer an interesting alternative as microencapsulating cells of various compounds of interest.
The Role of Smoking, Obesity, and Physical Inactivity in Cognitive Performance and Decline: A Multicohort Study
Authors: Hong Chenlu , Liu Zhaorui , Liu Yating , Jin Yinzi , Luo Yanan 
Published: October 2023

Abstract

Background
Unhealthy lifestyles are recognized contributors to cognitive decline, yet limited evidence focuses on their roles in cognitive decline rate. This study examined the role of smoking, obesity, and physical inactivity in cognitive performance and rate of cognitive decline by birth cohort on a global scale.

Methods
Utilizing data from 4 prospective cohort studies (China Health and Retirement Longitudinal Study, English Longitudinal Study on Ageing, Health and Retirement Study, and Survey of Health, Ageing and Retirement in Europe) across 14 countries, a multicohort study was performed. Eligible participants were aged 50 years and older. Linear mixed models were employed to detect the role of smoking, obesity, and physical inactivity in cognitive function domains (epidemic memory, working memory, and time orientation).

Results
Higher scores of cognitive functions were found in participants who engaged in more vigorous physical activity, were noncurrent smokers, and maintained underweight (eg, for episodic memory scores in females at 60 years, vigorous physical activity: 0.47, 95% CI: 0.46, 0.49). In addition, a slower rate of cognitive decline was also found in individuals who engaged in moderate or vigorous physical activity, were noncurrent smokers, and maintained not being underweight (eg, for episodic memory scores changing from 50 to 70 years old in females, vigorous physical activity: from 0.54 (95% CI: 0.51, 0.57) to 0.40 (95% CI: 0.37, 0.44) and in males from 0.33 (95% CI: 0.30, 0.36) to 0.11 (95% CI: 0.08, 0.14).

Conclusions
We confirmed the beneficial impact of healthy lifestyles in preventing cognitive decline and promoting healthy aging. Urgent measures are needed to identify and encourage healthy lifestyles, such as strengthening tobacco control, developing policy on physical activity promotion, and preventing underweight, to minimize worldwide levels of cognitive decline.
Being present and meaningful engagement for aged care residents living with dementia: A mixed-methods evaluation of Australian care worker’s experiences
Authors: Swinton John , Vilapakkam Nagarajan Srivalli , Atee Mustafa , Morris Thomas , Poulos Christopher J 
Published: October 2023

Abstract

Background and Objectives
Meaningful engagement is essential for aged care residents living with dementia . Our knowledge pertaining to caring presence for residents living with dementia is limited. This study aims to understand care workers’ experiences of providing care to residents , the challenges they face in being present with residents and support that enable them to be more present and provide person-centred care.

Research Design and Methods
A mixed-methods approach using surveys and semi-structured interviews with care workers from three Australian residential aged care homes (RACHs) was adopted. Surveys were analysed using descriptive statistics. Open-ended survey responses and interviews were analysed using thematic analysis.

Results
Twenty-six care workers completed surveys and a subset (n = 8) participated in interviews. Survey participants were largely positive about their role and reported that they loved caring for and making a difference in the lives of residents. Three themes emerged from interviews: (1) Trust, connection and the complexities of maintaining engagement; (2) Time as gift and challenge; (3) Organisational culture, structure and resources and enabling carer presence.

Discussion and Implications
Care workers in our study expressed their desire to be present with residents and stated that enablers such as meaningfully engaging with residents was one of the most enjoyable aspects of their work. Barriers such as staff shortages, competing demands of the role and time-related impediments to being present were reported. Addressing challenges to being present with residents living with dementia is key to help avoiding poor care practices and resident outcomes.
Gut microbial signatures of patients with primary hepatocellular carcinoma and their healthy first-degree relatives
Authors: Feng Jing , Wu Yalin , Dai Peng , Wang Dong , Liu Lixin , Chai Baofeng 
Published: October 2023

Abstract

Aims
The gut microbiome has been recognized as a significant contributor to primary hepatocellular carcinoma (HCC), with mounting evidence indicating associations between bacterial components and cancers of the digestive system.

Methods and results
Here, to characterize gut bacterial signature in patients with primary HCC and to assess the diagnostic potential of bacterial taxa for primary HCC, 21 HCC patients and 21 healthy first-degree relatives (control group) were enrolled in this study. Bacterial DNA in the fecal samples was quantified by 16S rRNA gene sequencing. We found that 743 operational taxonomic units (OTUs) were shared between patients with primary HCC and healthy controls. Of these, 197 OTUs were unique to patients with primary HCC, while 95 OTUs were unique to healthy subjects. Additionally, we observed significant differences in the abundance of Ruminococcaceae_UCG-014 and Romboutsia between patients with primary HCC and their healthy first-degree relatives. Besides, the relative abundance of Ruminococcaceae_UCG-014 and Prevotella_9 was positively correlated with physiological indicators including AST, ALT, ALB, or TBIL. Signature bacterial taxa could serve as non-invasive biomarkers, of which Romboutsia and Veillonella were identified as differential taxa in fecal samples from patients with HCC compared to healthy controls. Romboutsia showed a strong association with HCC (AUC = 0.802). Additionally, the combination of Romboutsia and Veillonella (AUC = 0.812) or the grouping of Fusobacterium, Faccalibacterium, and Peptostreptococcacae together (AUC = 0.762) exhibited promising outcomes for the diagnosis of HCC.

Conclusions
The composition of gut microbes in patients with HCC was found to be significantly altered. Differential taxa Romboutsia, Veillonella, and Peptostreptococcacae could be tested for identification of HCC.
Regulation of secondary hair follicle cycle in cashmere goats by miR-877-3p targeting IGFBP5 gene
Authors: Wu Cuiling , Yuan Liang , Cao Wenzhi , Ye Xiaofang , Ma Xiaolin , Qin Chongkai , Li Bin , Yu Fei , Fu Xuefeng 
Published: October 2023

Abstract
Cashmere, a highly valuable animal product derived from cashmere goats, holds significant economic importance. MiRNAs serve as crucial regulators in the developmental processes of mammalian hair follicles. Understanding the regulation of miRNAs during the hair follicle cycle is essential for enhancing cashmere quality. In this investigation, we employed high-throughput sequencing technology to analyze the expression profiles of miRNAs in the secondary hair follicles of Jiangnan cashmere goats at different stages. Through bioinformatics analysis, we identified differentially expressed miRNAs (DE miRNAs). The regulatory relationships between miRNAs and their target genes were verified using multiple techniques, including RT-qPCR, western blot, Dual-Luciferase Reporter, and CKK-8 assays. Our findings revealed the presence of 193 DE miRNAs during various stages of the hair follicle cycle in Jiangnan cashmere goats. Based on the previously obtained mRNA data, the target genes of DE miRNA were predicted, and 1,472 negative regulatory relationships between DE miRNAs and target genes were obtained. Notably, the expression of chi-miR-877-3p was down-regulated during the telogen (Tn) phase compared to the anagen (An) and catagen (Cn) phases, while the IGFBP5 gene exhibited up-regulation. Further validation experiments confirmed that overexpression of chi-miR-877-3p in dermal papilla cells suppressed IGFBP5 gene expression and facilitated cell proliferation. The results of this study provide novel insights for analyzing the hair follicle cycle.
Effects of early weaning on the reproductive performance of suckled Nelore cows in the subsequent breeding season
Authors: Nishimura Thiago Kan , da Silva Amanda Guimarães , Abitante Gabriela , Dahlen Carl Robertson , Goulart Rodrigo Silva , Zamudio Germán Darío Ramírez , Luz Silva Saulo , Santana Miguel Henrique de Almeida , Saran Netto Arlindo , Leme Paulo Roberto , Pugliesi Guilherme 
Published: October 2023

AbstractThis study aimed to evaluate the effects of early weaning (EW) on body composition, hormone concentrations and metabolites, and reproductive performance of Nelore cows in the subsequent breeding season (BS). Suckled cows that became pregnant by timed-AI (TAI) in the 2020-BS were exposed in 2021 to early weaning at 150 d (27 primiparous [PRI] and 74 multiparous [MUL]) or conventional weaning (CW) at 240 d postpartum (30 PRI and 77 MUL). Body weight (BW) and body condition score (BCS) were determined at 2020-BS, EW, CW, prepartum, and 2021-BS. Blood samples were collected at EW, CW, prepartum (54.75 ± 0.56 d prepartum), and 2021-TAI and assayed for insulin-like growth factor-1 (IGF-I), non-esterified fatty acid (NEFA), and β-hydroxybutyrate (BHB) concentrations. In 2021-BS, cows were exposed to a P4/E2-based protocol for TAI at day 0 (D0), and a second TAI was performed at D22 in females detected with luteolysis (D20) by Doppler ultrasound. The presence of corpus luteum (CL) on D10, estrous expression, and dominant follicle (DF) diameter, and blood perfusion (BP) on D2 and D0 were determined. Data were analyzed by ANOVA or logistic regression of SAS as a 2 × 2 factorial with main factors of parity (PRI or MUL) and weaning strategy (EW or CW). An interaction of parity and weaning strategy was not observed (P &gt; 0.1), but the weight (kg) and BCS were greater (P &lt; 0.05) in MUL cows at the five timepoints, and EW cows were heavier than CW at the moment of CW (541 vs. 493 kg; and 5.3 vs. 4.3), prepartum (551 vs. 506 kg; and 5.2 vs. 4.4) and 2021-BS (475 vs. 450 kg; and 4.5 vs. 3.7). Plasma urea concentration at 2021-BS was greater (P = 0.01) for PRI than for MUL. A parity-by-time interaction was observed (P ≤ 0.05) for concentrations of IGF-I, NEFA, and BHB. PRI cows had greater (P ≤ 0.05) concentrations of IGF-I at EW and greater (P ≤ 0.05) prepartum concentrations of NEFA and BHB than MUL cows. The proportion of cows with CL at D10 was not affected (P &gt; 0.1) by weaning but was greater (P &lt; 0.05) in MUL than in PRI cows (40.4 vs. 15.7%). The diameter of DF and proportion of BP on D0 were greater (P &lt; 0.05) in EW cows than in CW cows. The pregnancy rate (P/AI, %) at the first TAI was greater (P &lt; 0.05) in EW cows (60% vs. 45%), whereas no difference (P &gt; 0.1) was observed at the second TAI. Cumulative P/AI (first and second TAIs) was greater (P &lt; 0.05) in EW cows (81% vs. 63%). In conclusion, weaning at 150 d in Nelore cattle is a strategy to successfully recover the parous cow’s body condition and to improve pregnancy success in the next BS, regardless of the cow’s parity order.
Incidence and outcome of pseudoprogression after radiation therapy in glioblastoma patients: A cohort study
Authors: Blakstad Hanne , Mendoza Mireles Eduardo Erasmo , Heggebø Liv Cathrine , Magelssen Henriette , Sprauten Mette , Johannesen Tom Børge , Vik-Mo Einar Osland , Leske Henning , Niehusmann Pitt , Skogen Karoline , Helseth Eirik , Emblem Kyrre Eeg , Brandal Petter 
Published: October 2023

Abstract

Background
Differentiating post-radiation MRI changes from progressive disease (PD) in glioblastoma (GBM) patients represents a major challenge. The clinical problem is two-sided; avoid termination of effective therapy in case of pseudoprogression (PsP) and continuation of ineffective therapy in case of PD. We retrospectively assessed the incidence, management, and prognostic impact of PsP and analyzed factors associated with PsP in a GBM patient cohort.

Methods
Consecutive GBM patients diagnosed in the South-Eastern Norway Health Region from 2015 to 2018 who had received RT and follow-up MRI were included. Tumor, patient, and treatment characteristics were analyzed in relationship to re-evaluated MRI examinations at 3 and 6 months post-radiation using Response Assessment in Neuro-Oncology criteria.

Results
A total of 284 patients were included in the study. PsP incidence 3 and 6 months post-radiation was 19.4% and 7.0%, respectively. In adjusted analyses, methylated O6-methylguanine-DNA methyltransferase (MGMT) promoter and the absence of neurological deterioration were associated with PsP at both 3 (p &lt; .001 and p = .029, respectively) and 6 months (p = .045 and p = .034, respectively) post-radiation. For patients retrospectively assessed as PD 3 months post-radiation, there was no survival benefit of treatment change (p = .838).

Conclusions
PsP incidence was similar to previous reports. In addition to the previously described correlation of methylated MGMT promoter with PsP, we also found that absence of neurological deterioration significantly correlated with PsP. Continuation of temozolomide courses did not seem to compromise survival for patients with PD at 3 months post-radiation; therefore, we recommend continuing adjuvant temozolomide courses in case of inconclusive MRI findings.
A Pilot Study Examining Feasibility and Initial Efficacy of Remotely Delivered Cognitive Adaptation Training
Authors: Velligan Dawn I , Li Feiyu , Sebastian Veronica , Kennedy Cory , Mintz Jim 
Published: October 2023

Abstract
Cognitive Adaptation Training (CAT) is an evidence-based treatment that uses environmental supports including signs, text messages, checklists, smart pill containers, and the organization of belongings to bypass cognitive and motivational impairments and to cue adaptive behavior in the home or work environment. We developed and tested a remote version of CAT to make the treatment available more broadly. Because CAT is focused on working with the individual in their home environment to establish supports, CAT may not be as easy to translate into an effective virtual treatment as talk-therapies. Fifty-six members of managed care were assigned to or given their treatment preference for CAT or Remote CAT (R-CAT) for 6 months. In-person or virtual pill counts were conducted monthly and assessments of habit-formation, symptoms, functioning, and satisfaction were administered every 2 months by independent raters. Analyses using mixed models with repeated measures focused on pre-planned evaluations of within-group change. Adherence improved significantly in R-CAT, functioning improved significantly in CAT and both groups improved significantly on measures of habit-formation and symptoms across 6 months. Higher functioning individuals appeared to choose R-CAT. Satisfaction with treatment was very high in both groups. R-CAT appears to be a potentially effective treatment, particularly for medication follow-though. However, in contrast to decades of previous research, fewer than 20% of eligible Medicaid recipients agreed to participate in the study. This may have been due to recruitment during and immediately post-pandemic.
A phylogeny with divergence-time estimation of planthoppers (Hemiptera: Fulgoroidea) based on mitochondrial sequences
Authors: Wang Wenqian , Meng Rui , Huang Yixin , Fang Wei , Zhang Huan , Liu Huizhen , Stroiński Adam , Bourgoin Thierry , Qin Daozheng 
Published: October 2023

Abstract
The planthopper superfamily Fulgoroidea (Hemiptera: Fulgoromorpha) currently includes more than 14 000 described species in about 21 extant families. Despite multiple studies attempted, based on morphological characters or DNA sequence data, the phylogeny of this superfamily remains unsatisfactorily resolved. Here we reconstruct the phylogenetic relationship among the families of this superfamily based on the whole mitogenome sequences from 113 species representing 17 planthopper families and three families as outgroups, in which 41 species of Fulgoroidea were sequenced for this study. The phylogenetic trees were reconstructed based on three different datasets, both by maximum likelihood (ML, IQtree) and Bayesian inference (BI, MrBayes, and PhyloBayes). The tree topologies of ML and BI analyses were quite similar with only a few differences in some clades. The phylogenetic results showed that Cixiidae and Delphacidae were placed as sister-taxa at the base of this superfamily; the clade Fulgoridae + Dictyopharidae appeared younger than the Meenoplidae + Kinnaridae one, Derbidae and Achilidae were more recently derived than Fulgoridae + Dictyopharidae without depicting a monophyletic unit, and Tropiduchidae and Acanaloniidae appeared as sister-taxa. The divergence-time estimation analysis shows that most planthoppers underwent relatively rapid radiation during the Jurassic and Cretaceous. Divergence time between Cixiidae and Delphacidae can be traced back to the Middle Jurassic; Meenoplidae, Fulgoridae, and Issidae originated in the Lower Cretaceous; Lophopidae and Eurybrachidae can be traced to the Upper Cretaceous. This paper reconstructs the cladogram of Fulgoroidea based on more comprehensive mitogenome sequences so far, which could provide new clues for a better understanding of the evolution of this superfamily. However, the taxa sampling appears insufficient to address controversial groups in Fulgoroidea.
Protein citrullination: inhibition, identification and insertion
Authors: Barasa Leonard , Thompson Paul R. 
Published: October 2023

Protein citrullination is a post-translational modification (PTM) that is catalysed by the protein arginine deiminase (PAD) family of enzymes. This PTM involves the transformation of an arginine residue into citrulline. Protein citrullination is associated with several physiological processes, including the epigenetic regulation of gene expression, neutrophil extracellular trap formation and DNA damage-induced apoptosis. Aberrant protein citrullination is relevant to several autoimmune and neurodegenerative diseases and certain forms of cancer. PAD inhibitors have shown remarkable efficacy in a range of diseases including rheumatoid arthritis (RA), lupus, atherosclerosis and ulcerative colitis. In RA, anti-citrullinated protein antibodies can be detected prior to disease onset and are thus a valuable diagnostic tool for RA. Notably, citrullinated proteins may serve more generally as biomarkers of specific disease states; however, the identification of citrullinated protein residues remains challenging owing to the small 1 Da mass change that occurs upon citrullination. Herein, we highlight the progress made so far in the development of pan-PAD and isozyme selective inhibitors as well as the identification of citrullinated proteins and the site-specific incorporation of citrulline into proteins.
This article is part of the Theo Murphy meeting issue ‘The virtues and vices of protein citrullination’.