bluuebunny/crossref_metadata_2025_split huggingface dataset:
Local climate modulates the development of soil nematode communities after glacier retreat
Authors: Guerrieri Alessia , Cantera Isabel , Marta Silvio , Bonin Aurélie , Carteron Alexis , Ambrosini Roberto , Caccianiga Marco , Anthelme Fabien , Azzoni Roberto Sergio , Almond Peter , Alviz Gazitúa Pablo , Cauvy‐Fraunié Sophie , Ceballos Lievano Jorge Luis , Chand Pritam , Chand Sharma Milap , Clague John , Cochachín Rapre Justiniano Alejo , Compostella Chiara , Cruz Encarnación Rolando , Dangles Olivier , Deline Philip , Eger Andre , Erokhin Sergey , Franzetti Andrea , Gielly Ludovic , Gili Fabrizio , Gobbi Mauro , Hågvar Sigmund , Khedim Norine , Meneses Rosa Isela , Peyre Gwendolyn , Pittino Francesca , Proietto Angela , Rabatel Antoine , Urseitova Nurai , Yang Yan , Zaginaev Vitalii , Zerboni Andrea , Zimmer Anaïs , Taberlet Pierre , Diolaiuti Guglielmina Adele , Poulenard Jerome , Fontaneto Diego , Thuiller Wilfried , Ficetola Gentile Francesco 
Published: December 2023

AbstractThe worldwide retreat of glaciers is causing a faster than ever increase in ice‐free areas that are leading to the emergence of new ecosystems. Understanding the dynamics of these environments is critical to predicting the consequences of climate change on mountains and at high latitudes. Climatic differences between regions of the world could modulate the emergence of biodiversity and functionality after glacier retreat, yet global tests of this hypothesis are lacking. Nematodes are the most abundant soil animals, with keystone roles in ecosystem functioning, but the lack of global‐scale studies limits our understanding of how the taxonomic and functional diversity of nematodes changes during the colonization of proglacial landscapes. We used environmental DNA metabarcoding to characterize nematode communities of 48 glacier forelands from five continents. We assessed how different facets of biodiversity change with the age of deglaciated terrains and tested the hypothesis that colonization patterns are different across forelands with different climatic conditions. Nematodes colonized ice‐free areas almost immediately. Both taxonomic and functional richness quickly increased over time, but the increase in nematode diversity was modulated by climate, so that colonization started earlier in forelands with mild summer temperatures. Colder forelands initially hosted poor communities, but the colonization rate then accelerated, eventually leveling biodiversity differences between climatic regimes in the long term. Immediately after glacier retreat, communities were dominated by colonizer taxa with short generation time and r‐ecological strategy but community composition shifted through time, with increased frequency of more persister taxa with K‐ecological strategy. These changes mostly occurred through the addition of new traits instead of their replacement during succession. The effects of local climate on nematode colonization led to heterogeneous but predictable patterns around the world that likely affect soil communities and overall ecosystem development.
Global temperature homogenization can obliterate temporal isolation in migratory animals with potential loss of population structure
Authors: Bom Roeland A. , Piersma Theunis , Alves José A. , Rakhimberdiev Eldar 
Published: December 2023

AbstractClimate change is expected to increase the spatial autocorrelation of temperature, resulting in greater synchronization of climate variables worldwide. Possibly such ‘homogenization of the world’ leads to elevated risks of extinction and loss of biodiversity. In this study, we develop an empirical example on how increasing synchrony of global temperatures can affect population structure in migratory animals. We studied two subspecies of bar‐tailed godwits Limosa lapponica breeding in tundra regions in Siberia: yamalensis in the west and taymyrensis further east and north. These subspecies share pre‐ and post‐breeding stopover areas, thus being partially sympatric, but exhibiting temporal segregation. The latter is believed to facilitate reproductive isolation. Using satellite tracking data, we show that migration timing of both subspecies is correlated with the date of snowmelt in their respective breeding sites (later at the taymyrensis breeding range). Snow‐cover satellite images demonstrate that the breeding ranges are on different climate trajectories and become more synchronized over time: between 1997 and 2020, the date of snowmelt advanced on average by 0.5 days/year in the taymyrensis breeding range, while it remained stable in the yamalensis breeding range. Previous findings showed how taymyrensis responded to earlier snowmelt by advancing arrival and clutch initiation. In the predicted absence of such advancements in yamalensis, we expect that the two populations will be synchronized by 2036–2040. Since bar‐tailed godwits are social migrants, this raises the possibility of population exchange and prompts the question whether the two subspecies can maintain their geographic and morphological differences and population‐specific migratory routines. The proposed scenario may apply to a wide range of (social) migrants as temporal segregation is crucial for promoting and maintaining reproductive isolation in many (partially sympatric) migratory populations. Homogenization of previously isolated populations could be an important consequence of increasing synchronized environments and hence climate change.
Opposing responses of temporal stability of aboveground and belowground net primary productivity to water and nitrogen enrichment in a temperate grassland
Authors: Xu Zhuwen , Jiang Lin , Ren Haiyan , Han Xingguo 
Published: December 2023

AbstractChanges in water and nitrogen availability, as important elements of global environmental change, are known to affect the temporal stability of aboveground net primary productivity (ANPP). However, evidences for their effects on the temporal stability of belowground net primary productivity (BNPP), and whether such effects are consistent between belowground and aboveground, are rather scarce. Here, we investigated the responses of temporal stability of both ANPP and BNPP to water and nitrogen addition based on a 9‐year manipulative experiment in a temperate grassland in northern China. The results showed that the temporal stability of ANPP increased with water addition but decreased with nitrogen addition. By contrast, the temporal stability of BNPP decreased with water addition but increased with nitrogen enrichment. The temporal stability of ANPP was mainly determined by the soil moisture and inorganic nitrogen, which modulated species asynchrony, as well as by the stability of dominant species. On the other hand, the temporal stability of BNPP was mainly driven by the soil moisture and inorganic nitrogen that modulated ANPP of grasses, and by the direct effect of soil water availability. Our study provides the first evidence on the opposite responses of aboveground and belowground grassland temporal stability to increased water and nitrogen availability, highlighting the importance of considering both aboveground and belowground components of ecosystems for a more comprehensive understanding of their dynamics.
Constraining long‐term model predictions for woody growth using tropical tree rings
Authors: Xu Xiangtao , van der Sleen Peter , Groenendijk Peter , Vlam Mart , Medvigy David , Moorcroft Paul , Petticord Daniel , Ma Yixin , Zuidema Pieter A. 
Published: December 2023

AbstractThe strength and persistence of the tropical carbon sink hinges on the long‐term responses of woody growth to climatic variations and increasing CO2. However, the sensitivity of tropical woody growth to these environmental changes is poorly understood, leading to large uncertainties in growth predictions. Here, we used tree ring records from a Southeast Asian tropical forest to constrain ED2.2‐hydro, a terrestrial biosphere model with explicit vegetation demography. Specifically, we assessed individual‐level woody growth responses to historical climate variability and increases in atmospheric CO2 (Ca). When forced with historical Ca, ED2.2‐hydro reproduced the magnitude of increases in intercellular CO2 concentration (a major determinant of photosynthesis) estimated from tree ring carbon isotope records. In contrast, simulated growth trends were considerably larger than those obtained from tree rings, suggesting that woody biomass production efficiency (WBPE = woody biomass production:gross primary productivity) was overestimated by the model. The estimated WBPE decline under increasing Ca based on model‐data discrepancy was comparable to or stronger than (depending on tree species and size) the observed WBPE changes from a multi‐year mature‐forest CO2 fertilization experiment. In addition, we found that ED2.2‐hydro generally overestimated climatic sensitivity of woody growth, especially for late‐successional plant functional types. The model‐data discrepancy in growth sensitivity to climate was likely caused by underestimating WBPE in hot and dry years due to commonly used model assumptions on carbon use efficiency and allocation. To our knowledge, this is the first study to constrain model predictions of individual tree‐level growth sensitivity to Ca and climate against tropical tree‐ring data. Our results suggest that improving model processes related to WBPE is crucial to obtain better predictions of tropical forest responses to droughts and increasing Ca. More accurate parameterization of WBPE will likely reduce the stimulation of woody growth by Ca rise predicted by biosphere models.
Upland forest retreat lags behind sea‐level rise in the mid‐Atlantic coast
Authors: Chen Yaping , Kirwan Matthew L. 
Published: December 2023

AbstractGhost forests consisting of dead trees adjacent to marshes are striking indicators of climate change, and marsh migration into retreating coastal forests is a primary mechanism for marsh survival in the face of global sea‐level rise. Models of coastal transgression typically assume inundation of a static topography and instantaneous conversion of forest to marsh with rising seas. In contrast, here we use four decades of satellite observations to show that many low‐elevation forests along the US mid‐Atlantic coast have survived despite undergoing relative sea‐level rise rates (RSLRR) that are among the fastest on Earth. Lateral forest retreat rates were strongly mediated by topography and seawater salinity, but not directly explained by spatial variability in RSLRR, climate, or disturbance. The elevation of coastal tree lines shifted upslope at rates correlated with, but far less than, contemporary RSLRR. Together, these findings suggest a multi‐decadal lag between RSLRR and land conversion that implies coastal ecosystem resistance. Predictions based on instantaneous conversion of uplands to wetlands may therefore overestimate future land conversion in ways that challenge the timing of greenhouse gas fluxes and marsh creation, but also imply that the full effects of historical sea‐level rise have yet to be realized.
Freshwater invertebrate responses to fine sediment stress: A multi‐continent perspective
Authors: McKenzie Morwenna , Brooks Andrew , Callisto Marcos , Collins Adrian L. , Durkota Jessica M. , Death Russell G. , Jones J. Iwan , Linares Marden S. , Matthaei Christoph D. , Monk Wendy A. , Murphy John F. , Wagenhoff Annika , Wilkes Martin , Wood Paul J. , Mathers Kate L. 
Published: December 2023

AbstractExcessive fine sediment (particles <2 mm) deposition in freshwater systems is a pervasive stressor worldwide. However, understanding of ecological response to excess fine sediment in river systems at the global scale is limited. Here, we aim to address whether there is a consistent response to increasing levels of deposited fine sediment by freshwater invertebrates across multiple geographic regions (Australia, Brazil, New Zealand and the UK). Results indicate ecological responses are not globally consistent and are instead dependent on both the region and the facet of invertebrate diversity considered, that is, taxonomic or functional trait structure. Invertebrate communities of Australia were most sensitive to deposited fine sediment, with the greatest rate of change in communities occurring when fine sediment cover was low (below 25% of the reach). Communities in the UK displayed a greater tolerance with most compositional change occurring between 30% and 60% cover. In both New Zealand and Brazil, which included the most heavily sedimented sampled streams, the communities were more tolerant or demonstrated ambiguous responses, likely due to historic environmental filtering of invertebrate communities. We conclude that ecological responses to fine sediment are not generalisable globally and are dependent on landscape filters with regional context and historic land management playing important roles.
Inundation impacts on diversified pasture biomass allocation and soil particulate organic matter stocks
Authors: Ribeiro Ricardo Henrique , Miquilini Marina , Lyon Steve W. , Dieckow Jeferson , Chiavegato Marilia Barbosa 
Published: December 2023

AbstractNatural soil inundation caused by frequent and intense precipitation affects carbon allocation in grassland biomass, ultimately leading to changes in soil carbon storage. Increasing forage diversity could provide resiliency to inundation of grassland. The objective was to evaluate forage and root biomass and C and N stocks in the soil particulate organic matter (POM) from pastures under recurring short‐term inundation. Three forage species combinations were evaluated in an inundated (typically lasting for a few days after heavy rain events) and a non‐inundated pasture: (1) predominantly tall‐fescue (Festuca arundinacea Schreb.); (2) mixture of cool‐season perennials composed of tall‐fescue, orchardgrass (Dactylis glomerata L.), bluegrass (Poa pratensis L.) and white (Trifolium repens L.) and red clover (Trifolium pratense L.); (3) and cool‐season mixture of perennials overseeded with oats (Avena strigosa Schreb.) and rye (Secale cereale L.). Roots and forage biomass were sampled during the growing seasons of 2021 and 2022. Soil POM was evaluated 2.5 years after establishment. Inundation reduced forage and root biomass mainly during periods of higher inundation frequency, leading to lower C‐POM stocks (p < .05). Inundation caused a shift in the forage botanical composition, that is, higher occurrence of weeds and less productive grass species with shallow roots. The perennial cool‐season mixture did not increase forage yield compared with tall fescue only but did increase root mass. This occurred mainly at deeper layers and, consequently, increased C‐POM stocks (p < .05). Overseeding of winter annuals reduced overall forage production, despite increasing spring biomass when inundated in the first year, but reduced C and N‐POM stocks (p < .05). Perennial cool‐season forage mixtures can increase the resilience of pastures to inundation events and contribute to increased carbon sequestration in grasslands where inundation is prevalent.
Physical function decline predictors in nursing home residents using new national quality indicators
Authors: Noguchi‐Watanabe Maiko , Ishikawa Takako , Ikuta Kasumi , Aishima Miya , Nonaka Sayuri , Takahashi Kunihiko , Anzai Tatsuhiko , Fukui Sakiko 
Published: December 2023

AimTo determine the predictors of physical function (PF) decline among nursing home residents using items from the Long‐term care Information system For Evidence (LIFE), a system launched in 2021 to ensure the quality of long‐term care.MethodsThe LIFE data of 1648 residents from 45 nursing homes in Japan were retrospectively collected in July 2021 (T0) and January 2022 (T1), including demographics, PF assessed by the Barthel index (BI), nutrition and oral health, and cognitive function. The Dementia Behavior Disturbance scale was used to assess the frequency of certain behaviors, such as “waking at midnight.” The predictors of PF decline, defined as a decrease ≥5 in the BI score at T1 compared with that at T0, were determined using mixed‐effects logistic regression analyses. PF at T0 was classified into high (>60 BI) and low (≤60 BI) groups.ResultsThe participants' mean age was 87.2 ± 7.1 years, and 45.3% experienced PF decline. The significant predictors of PF decline were age ≥ 90 years, body mass index <18.5 kg/m2, dementia diagnosis, moderate and severe cognitive impairments, not vocalizing reciprocal exchanges at will, always “waking at midnight,” and high PF at T0.ConclusionsThe LIFE items predicted PF decline among nursing home residents, suggesting that LIFE data can be used to ensure the quality of long‐term care. Geriatr Gerontol Int 2024; 24: 123–132.
Large scale synthesis of mesoporous and nonporous silica submicron particles via polymer‐derived ceramic method
Authors: Paryab Amirhosein , Saghatchi Mahshid , Behsam Shadi , Abdollahi Sorosh , Malek Khachatourian Adrine 
Published: December 2023

AbstractMesoporous silica particles (MSPs) are highly important in applications like H2 storage, catalysis/biocatalysis, adsorption, separation, and particularly in biomedical applications. The typical methods for producing MSPs are fast self‐assembly, soft and hard templating, and the modified Stöber method. These approaches have drawbacks like high cost, being time‐consuming, and low scale. Herein, as a novel strategy, a polymer‐derived ceramic method for large‐scale production of mesoporous and dense silica submicron particles with high yield and low cost is presented. This method requires commercial silicone resin, polydimethylsiloxane, as the main precursor of silica. However, this technique did not show high control over the size and surface area compared with the typical methods of MSPs synthesis but is definitely a significant step toward the large‐scale synthesis of MSPs.
FLAER as a standalone reagent for paroxysmal nocturnal hemoglobinuria: Do we need to reconsider the guidelines for testing?
Authors: Sharma Praveen , Bose Parveen , Mallik Nabhajit , Gupta Dikshat Gopal , Rachagiri Suneel , Kumar Arun , Kaur Jasbir , Malhotra Pankaj , Varma Neelam , Sachdeva Man Updesh Singh 
Published: December 2023

AbstractIntroductionFlow cytometry‐based paroxysmal nocturnal hemoglobinuria (PNH) testing involves utilization of monoclonal antibodies against GPI‐linked proteins and FLAER. The ability of FLAER to bind to a wide variety of GPI‐linked structures and to be utilized across different leukocyte subsets is remarkable. We hypothesize that FLAER as a standalone reagent may be equally effective for detecting PNH clones. The present study intends to compare the results of a FLAER alone‐based strategy to the recommended FLAER+GPI‐linked protein‐based approach for applicability in clinical settings.MethodsEDTA‐anticoagulated blood samples from patients for PNH workup were tested for PNH by multiparametric flow cytometry. A conventional panel comprising gating markers (CD45 for WBC, CD15 for granulocytes, and CD64 for monocytes) and a combination of FLAER and GPI‐linked markers, such as CD24 and CD14, henceforth referred to as the “routine panel,” was employed. Second, a “FLAER‐only panel” comprising the gating markers and FLAER alone (excluding the GPI‐linked markers CD24 and CD14) was set up. The samples were processed using the lyse‐wash‐stain‐wash technique, and events were acquired on BC Navios Ex flow cytometer (Beckman Coulter, Inc., USA) and analyzed on Kaluza Software 2.1. The presence of a PNH clone was reported at a value of ≥0.01%.ResultsA total of 209 patients were tested. Both panels found a PNH clone in 20.1% of patients (n = 42/209) with a 100% concordance rate. The PNH clone range for granulocytes was 0.01%–89.68%, and for monocyte was 0.04%–96.09% in the routine panel. The range in the FLAER‐only panel for granulocytes was 0.01%–89.61%, and for monocytes, it was 0.01%–96.05%. Pearson correlation statistics revealed a significant correlation between the size of the PNH clone of granulocytes and monocytes among the two panels tested (granulocytes r = 0.9999, p < 0.0001, 95% CI = 0.9999 to 1.000; monocytes r = 0.9974, p < 0.0001, 95% CI = 0.9966–0.9980).ConclusionBased on our results, FLAER as a standalone marker is specific and sensitive for identifying PNH clones in granulocytes and monocytes, even for high‐sensitivity PNH assay. The proposed “FLAER‐only panel” panel is efficient and cost‐effective for highly sensitive PNH testing in two different cell lineages, especially in resource‐limited clinical settings.
Prognostic significance of the frequencies of bone marrow lymphocyte subsets in adult acute myeloid leukemia at diagnosis
Authors: Sun Kai , Wang Jun , Wang Ya‐Zhe , Shi Zong‐Yan , Chang Yan , Yuan Xiao‐Ying , Liu Yan‐Rong , Jiang Hao , Jiang Qian , Huang Xiao‐Jun , Qin Ya‐Zhen 
Published: December 2023

AbstractIntroductionImmune microenvironment plays an important role in the occurrence and development of acute myeloid leukemia (AML). Studies assessing the prognostic significance of bone marrow (BM) lymphocyte subsets' frequencies at diagnosis in patients with AML were limited.MethodsFresh BM samples collected from 97 adult AML patients at diagnosis were tested for lymphocyte, T, CD4+T, CD8+T, γδT, NK, and B cell frequencies using multi‐parameter flow cytometry.ResultsLow frequencies of lymphocytes, T, CD4+T, and CD8+T cells were associated with significantly lower rates of one‐course complete remission (CR) (all p < 0.05). Moreover, the frequency of CD4+T cells independently predicted one‐course CR achievement (p = 0.021). Low frequencies of T and CD8+T cells were significantly associated with lower relapse‐free survival (RFS) rates (p = 0.032; 0.034), respectively, and a low frequency of CD8+T cells was associated with a significantly lower overall survival (OS) rate (p = 0.028). Combination of frequency of CD8+T cells and ELN risk stratification showed that patients with ELN‐intermediate/adverse risk + high CD8+T cell frequency had a similar RFS rate to those with ELN‐favorable risk + high CD8+T cell frequency and those with ELN‐favorable risk + low CD8+T cell frequency (p = 0.88; 0.76), respectively. The RFS rate of patients with ELN intermediate/adverse risk + low CD8+T cell frequency was significantly lower than that of all aforementioned patients (p = 0.021; 0.0007; 0.028), respectively.ConclusionThe frequencies of BM lymphocyte subsets at diagnosis predicted clinical outcomes and could help improve risk stratification in AML.
From Mendel to mycoses: Immuno‐genomic warfare at the human–fungus interface
Authors: Vinh Donald C. 
Published: December 2023

SummaryFungi are opportunists: They particularly require a defect of immunity to cause severe or disseminated disease. While often secondary to an apparent iatrogenic cause, fungal diseases do occur in the absence of one, albeit infrequently. These rare cases may be due to an underlying genetic immunodeficiency that can present variably in age of onset, severity, or other infections, and in the absence of a family history of disease. They may also be due to anti‐cytokine autoantibodies. This review provides a background on how human genetics or autoantibodies underlie cases of susceptibility to severe or disseminated fungal disease. Subsequently, the lessons learned from these inborn errors of immunity marked by fungal disease (IEI‐FD) provide a framework to begin to mechanistically decipher fungal syndromes, potentially paving the way for precision therapy of the mycoses.