bluuebunny/crossref_metadata_2025_split huggingface dataset:
Comparative phylogeography of livebearing fishes in the genera Poeciliopsis and Poecilia (Poeciliidae: Cyprinodontiformes) in central Mexico
Authors: Mateos Mariana 
Published: April 2005

AbstractAim  To test the hypothesis that the vicariant event responsible for north–south divergences in two clades of the fish genus Poeciliopsis Regan was also responsible for north–south divergences in the fish Poecilia butleri Jordan.Location  Central Mexico.Methods  Parsimony, distance, maximum likelihood and Bayesian phylogenetic analyses of a mitochondrial gene. Molecular clock test and Bayesian analyses of divergence time.Results  We report concordant phylogeographical patterns between two clades in the genus Poeciliopsis (i.e. the other formed by P. latidens Garman and P. fasciata Meek, and the other formed by P. presidionis Jordan and P. turneri Miller) and the clade of Poecilia butleri, with northern and southern individuals within each clade grouping into separate lineages. There is also evidence for slower substitution rates in Poecilia compared with Poeciliopsis. After taking into account these substitution rate discrepancies with Bayesian relaxed molecular clock analyses, north–south divergences in Poecilia butleri were equivalent to those reported for Poeciliopsis latidens‐fasciata and P. presidionis‐turneri.Main conclusions  The same Plio‐Pleistocene vicariant event associated with geological activity of the Trans‐Mexican Volcanic Belt (TMVB) appears to have caused divergence in three different freshwater fish lineages. This study is an example of how comparative phylogeography can strengthen inferences about vicariant events in regions of high biological diversity and complex geological history such as the TMVB.
Directional asymmetry of long‐distance dispersal and colonization could mislead reconstructions of biogeography
Authors: Cook Lyn G. , Crisp Michael D. 
Published: April 2005

AbstractAim  Phylogenies are increasingly being used to attempt to answer biogeographical questions. However, a reliance on tree topology alone has emerged without consideration of earth processes or the biology of the organisms in question. Most ancestral‐state optimization methods have inherent problems, including failure to take account of asymmetry, such as unequal probabilities of losses and gains, and the lack of use of independent cost estimates. Here we discuss what we perceive as shortcomings in most current tree‐based biogeography interpretation methods and show that consideration of processes and their likelihoods can turn the conventional biogeographical interpretation on its head.Location  Southern hemisphere focus but applicable world‐wide.Methods  The logic of existing methods is reviewed with respect to their adequacy in modelling processes such as geographical mode of speciation and likelihood of dispersal, including directional bias. Published reconstructions of dispersal of three plant taxa between Australia and New Zealand were re‐analysed using standard parsimony and maximum likelihood (ML) methods with rate matrices to model expected asymmetry of dispersal.Results  Few studies to date incorporate asymmetric dispersal rate matrices or question the simplistic assumption of equal costs. Even when they do, cost matrices typically are not derived independently of tree topology. Asymmetrical dispersal between Australia and New Zealand could be reconstructed using parsimony but not with ML.Main conclusions  The inadequacy of current models has important consequences for our interpretation of southern hemisphere biogeography, particularly in relation to dispersal. For example, if repeated directional dispersals and colonization in the direction of prevailing winds have occurred, with intervening periods of speciation, then there is no need to infer dispersals against those winds. Failure to take account of directionality and other biases in reconstruction methods has implications beyond the simple misinterpretation of the biogeography of a taxonomic group, such as calibration of molecular clocks, the dating of vicariance events, and the prioritization of areas for conservation.
Assumption 2: opaque to intuition?
Authors: Ebach Malte C. , Humphries Christopher J. , Newman Rhys A. , Williams David M. , Walsh Stig A. 
Published: April 2005

AbstractAim The aim of this paper was to revise the historical biogeographical method for resolving complicated distribution patterns through a technique that has come to be called assumption 2. Assumption 2 was used to resolve multiple areas on a single terminal branch (masts) as well as paralogous and missing areas in two or more areagrams. Recent examples, however, have shown that assumption 2 may beusingrather thanresolvingparalogy. The paper attempts to resolve this problem by formulating a separate procedure to avoid using paralogous (redundant) area data in area cladistic analyses.Method The revision results in a new derivative method, the transparent method, to replace assumptions 1 and 2. It separates the procedures for resolving paralogy and for solving distribution patterns that occur in more than one area (masts).Results Several hypothetical examples show how the transparent method reduces paralogy and masts. The results show that paralogy can be reduced if the paralogy subtree method is applied after uncovering all possible relationships as single components on the terminals of areagrams.Conclusion The transparent method is a significant step forward in cladistic biogeography as it utilizes area relationships rather than generating general areagrams based on paralogous data.
Methodological quality and reporting of ethical requirements in phase III cancer trials
Authors: Tuech J J , Pessaux P , Moutel G , Thoma V , Schraub S , Herve C 
Published: April 2005

Background:The approval of a research ethics committee (REC) and obtaining informed consent from patients (ICP) could be considered the main issues in the ethics of research with human beings. The aim of this study was to assess both methodological quality and ethical quality, and also to assess the relationship between these two qualities in randomised phase III cancer trials.Method:Methodological quality (Jadad score) and ethical quality (Berdeu score) were assessed for all randomised controlled trials (RCTs) published in 10 international journals between 1999 and 2001 (n =  231).Results:The mean Jadad score was 9.86 ± 1.117. The methodological quality was poor in 75 RCTs (Jadad score <9). The mean Berdeu score was 0.42 ± 0.133. The mean ethical quality score for poor methodological quality RCTs (n =  75) was 0.39 ± 0.133; it was 0.43 ± 0.133 for good (n =  156) methodological quality RCTs (p  =  0.07). There was improvement in ethical quality according to the year of commencement of the trials (p < 0.001). There was no correlation between methodological quality and the number of participating patients (R2  =  0.003, p  =  0.78), between ethical quality and the number of participating patients (R2  =  0.003, p  =  0.76 ), or between ethical quality and methodological quality (R2  =  0.012, p  =  0.1). ICP and REC approval were not obtained for 21 and 77 trials respectively.Conclusion:The association between methodological quality and the reporting of ethical requirements probably reflects the respect shown for patients during the whole research process. These results suggest that closer attention to the conduct of clinical research, as well as the reporting of its ethical aspects, is needed.
The Functional Organization of Auditory Working Memory as Revealed by fMRI
Authors: Arnott Stephen R. , Grady Cheryl L. , Hevenor Stephanie J. , Graham Simon , Alain Claude 
Published: April 2005

Abstract
Spatial and nonspatial auditory tasks preferentially recruit dorsal and ventral brain areas, respectively. However, the extent to which these auditory differences reflect specific aspects of mental processing has not been directly studied. In the present functional magnetic resonance imaging experiment, participants encoded and maintained either the location or the identity of a sound for a delay period of several seconds and then subsequently compared that information with a second sound. Relative to sound localization, sound identification was associated with greater hemodynamic activity in the left rostral superior temporal gyrus. In contrast, localizing sounds recruited greater activity in the parietal cortex, posterior temporal lobe, and superior frontal sulcus. The identification differences were most prominent during the early stage of the trial, whereas the location differences were most evident during the late (i.e., comparison) stage. Accordingly, our results suggest that auditory spatial and identity dissociations as revealed by functional imaging may be dependent to some degree on the type of processing being carried out. In addition, dorsolateral prefrontal and lateral superior parietal areas showed greater activity during the comparison as opposed to the earlier stage of the trial, regardless of the type of auditory task, consistent with results from visual working memory studies.
Inattentional Amnesia to Words in a High Attentional Load Task
Authors: Ruz María , Worden Michael S. , Tudela Pío , McCandliss Bruce D. 
Published: April 2005

Abstract
We investigated the dependence of visual word processes on attention by examining event-related potential (ERP) responses as subjects viewed words while their attention was engaged by a concurrent highly demanding task. We used a paradigm from a previous functional magnetic resonance imaging (fMRI) experiment [Rees, G., Russel, C., Frith, C. D., & Driver, J. Inattentional blindness vs. inattentional amnesia for fixated but ignored words. Science, 286, 2504–2506, 1999] in which participants attended either to drawings or to overlapping letters (words or nonwords) presented at a fast rate. Although previous fMRI results supported the notion that word processing was obliterated by attention withdrawal, the current electrophysiological results demonstrated that visual words are processed even under conditions in which attentional resources are engaged in a different task that does not involve reading. In two experiments, ERPs for attended words versus nonwords differed in the left frontal, left posterior, and medial scalp locations. However, in contrast to the previous fMRI results, ERPs responded differentially to ignored words and consonant strings in several regions. These results suggest that fMRI and ERPs may have differential sensitivity to some forms of neural activation. Moreover, they provide evidence to restore the notion that the brain analyzes words even when attention is tied to another dimension.
Aerosol Properties and Chemical Apportionment of Aerosol Optical Depth at Locations off the U.S. East Coast in July and August 2001
Authors: Magi Brian I. , Hobbs Peter V. , Kirchstetter Thomas W. , Novakov Tihomir , Hegg Dean A. , Gao Song , Redemann Jens , Schmid Beat 
Published: April 2005

Abstract
Airborne in situ measurements of vertical profiles of the aerosol light scattering coefficient, light absorption coefficient, and single scattering albedo (ω0) are presented for locations off the East Coast of the United States in July–August 2001. The profiles were obtained in relatively clean air, dominated by airflows that had passed over Canada and the Atlantic Ocean. Comparisons of aerosol optical depths (AODs) at 550 nm derived from airborne in situ and sun-photometer measurements agree, on average, to within 0.034 ± 0.021. A frequency distribution of ω0 measured in the atmospheric boundary layer off the coast yields an average value of ω0 = 0.96 ± 0.03 at 550 nm. Values for the mass scattering efficiencies of sulfate and total carbon (organic and black carbon) derived from a multiple linear regression are 6.0 ± 1.0 m2 (g SO=4)−1 and 2.6 ± 0.9 m2 (g C)−1, respectively. Measurements of sulfate and total carbon mass concentrations are used to estimate the contributions of these two major components of the submicron aerosol to the AOD. Mean percentage contributions to the AOD from sulfate, total carbon, condensed water, and absorbing aerosols are 38% ± 8%, 26% ± 9%, 32% ± 9%, and 4% ± 2%, respectively. The sensitivity of the above results to the assumed values of the hygroscopic growth factors for the particles are examined and it is found that, although the AOD derived from the in situ measurements can vary by as much as 20%, the average value of ω0 is not changed significantly. The results are compared with those obtained in the same region in 1996 under more polluted conditions.
Radiative Transfer Modeling for the CLAMS Experiment
Authors: Jin Zhonghai , Charlock Thomas P. , Rutledge Ken , Cota Glenn , Kahn Ralph , Redemann Jens , Zhang Taiping , Rutan David A. , Rose Fred 
Published: April 2005

Abstract
Spectral and broadband radiances and irradiances (fluxes) were measured from surface, airborne, and spaceborne platforms in the Chesapeake Lighthouse and Aircraft Measurements for Satellites (CLAMS) campaign. The radiation data obtained on the 4 clear days over ocean during CLAMS are analyzed here with the Coupled Ocean–Atmosphere Radiative Transfer (COART) model. The model is successively compared with observations of broadband fluxes and albedos near the ocean surface from the Clouds and the Earth's Radiant Energy System (CERES) Ocean Validation Experiment (COVE) sea platform and a low-level OV-10 aircraft, of near-surface spectral albedos from COVE and OV-10, of broadband radiances at multiple angles and inferred top-of-atmosphere (TOA) fluxes from CERES, and of spectral radiances at multiple angles from Airborne Multiangle Imaging Spectroradiometer (MISR), or “AirMISR,” at 20-km altidude. The radiation measurements from different platforms are shown to be consistent with each other and with model results. The discrepancies between the model and observations at the surface are less than 10 W m−2 for downwelling and 2 W m−2 for upwelling fluxes. The model–observation discrepancies for shortwave ocean albedo are less than 8%; some discrepancies in spectral albedo are larger but less than 20%. The discrepancies between low-altitude aircraft and surface measurements are somewhat larger than those between the model and the surface measurements; the former are due to the effects of differences in height, aircraft pitch and roll, and the noise of spatial and temporal variations of atmospheric and oceanic properties. The discrepancy between the model and the CERES observations for the upwelling radiance is 5.9% for all angles; this is reduced to 4.9% if observations within 15° of the sun-glint angle are excluded.
The measurements and model agree on the principal impacts that ocean optical properties have on upwelling radiation at low levels in the atmosphere. Wind-driven surface roughness significantly affects the upwelling radiances measured by aircraft and satellites at small sun-glint angles, especially in the near-infrared channel of MISR. Intercomparisons of various measurements and the model show that most of the radiation observations in CLAMS are robust, and that the coupled radiative transfer model used here accurately treats scattering and absorption processes in both the air and the water.
Two MODIS Aerosol Products over Ocean on the Terra and Aqua CERES SSF Datasets
Authors: Ignatov Alexander , Minnis Patrick , Loeb Norman , Wielicki Bruce , Miller Walter , Sun-Mack Sunny , Tanré Didier , Remer Lorraine , Laszlo Istvan , Geier Erika 
Published: April 2005

Abstract
Understanding the impact of aerosols on the earth’s radiation budget and the long-term climate record requires consistent measurements of aerosol properties and radiative fluxes. The Clouds and the Earth’s Radiant Energy System (CERES) Science Team combines satellite-based retrievals of aerosols, clouds, and radiative fluxes into Single Scanner Footprint (SSF) datasets from the Terra and Aqua satellites. Over ocean, two aerosol products are derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) using different sampling and aerosol algorithms. The primary, or M, product is taken from the standard multispectral aerosol product developed by the MODIS aerosol group while a simpler, secondary [Advanced Very High Resolution Radiometer (AVHRR) like], or A, product is derived by the CERES Science Team using a different cloud clearing method and a single-channel aerosol algorithm. Two aerosol optical depths (AOD), τA1 and τA2, are derived from MODIS bands 1 (0.644 μm) and 6 (1.632 μm) resembling the AVHRR/3 channels 1 and 3A, respectively. On Aqua the retrievals are made in band 7 (2.119 μm) because of poor quality data from band 6. The respective Ångström exponents can be derived from the values of τ. The A product serves as a backup for the M product. More importantly, the overlap of these aerosol products is essential for placing the 20+ year heritage AVHRR aerosol record in the context of more advanced aerosol sensors and algorithms such as that used for the M product.
This study documents the M and A products, highlighting their CERES SSF specifics. Based on 2 weeks of global Terra data, coincident M and A AODs are found to be strongly correlated in both bands. However, both domains in which the M and A aerosols are available, and the respective τ/α statistics significantly differ because of discrepancies in sampling due to differences in cloud and sun-glint screening. In both aerosol products, correlation is observed between the retrieved aerosol parameters (τ/α) and ambient cloud amount, with the dependence in the M product being more pronounced than in the A product.
The NPOESS Airborne Sounding Testbed Interferometer—Remotely Sensed Surface and Atmospheric Conditions during CLAMS
Authors: Smith W. L. , Zhou D. K. , Larar A. M. , Mango S. A. , Howell H. B. , Knuteson R. O. , Revercomb H. E. , Smith W. L. 
Published: April 2005

Abstract
During the Chesapeake Lighthouse and Aircraft Measurements for Satellites (CLAMS), the National Polar-orbiting Operational Environmental Satellite System (NPOESS) Airborne Sounder Testbed-Interferometer (NAST-I), flying aboard the high-altitude Proteus aircraft, observed the spatial distribution of infrared radiance across the 650–2700 cm−1 (3.7–15.4 μm) spectral region with a spectral resolution of 0.25 cm−1. NAST-I scans cross track with a moderate spatial resolution (a linear ground resolution equal to 13% of the aircraft altitude at nadir). The broad spectral coverage and high spectral resolution of this instrument provides abundant information about the surface and three-dimensional state of the atmosphere. In this paper, the NAST-I measurements and geophysical product retrieval methodology employed for CLAMS are described. Example results of surface properties and atmospheric temperature, water vapor, ozone, and carbon monoxide distributions are provided. The CLAMS NAST-I geophysical dataset is available for use by the scientific community.
The MODIS Aerosol Algorithm, Products, and Validation
Authors: Remer L. A. , Kaufman Y. J. , Tanré D. , Mattoo S. , Chu D. A. , Martins J. V. , Li R.-R. , Ichoku C. , Levy R. C. , Kleidman R. G. , Eck T. F. , Vermote E. , Holben B. N. 
Published: April 2005

Abstract
The Moderate Resolution Imaging Spectroradiometer (MODIS) aboard both NASA’s Terra and Aqua satellites is making near-global daily observations of the earth in a wide spectral range (0.41–15 μm). These measurements are used to derive spectral aerosol optical thickness and aerosol size parameters over both land and ocean. The aerosol products available over land include aerosol optical thickness at three visible wavelengths, a measure of the fraction of aerosol optical thickness attributed to the fine mode, and several derived parameters including reflected spectral solar flux at the top of the atmosphere. Over the ocean, the aerosol optical thickness is provided in seven wavelengths from 0.47 to 2.13 μm. In addition, quantitative aerosol size information includes effective radius of the aerosol and quantitative fraction of optical thickness attributed to the fine mode. Spectral irradiance contributed by the aerosol, mass concentration, and number of cloud condensation nuclei round out the list of available aerosol products over the ocean. The spectral optical thickness and effective radius of the aerosol over the ocean are validated by comparison with two years of Aerosol Robotic Network (AERONET) data gleaned from 132 AERONET stations. Eight thousand MODIS aerosol retrievals collocated with AERONET measurements confirm that one standard deviation of MODIS optical thickness retrievals fall within the predicted uncertainty of Δτ = ±0.03 ±0.05τ over ocean and Δτ = ±0.05 ± 0.15τ over land. Two hundred and seventy-one MODIS aerosol retrievals collocated with AERONET inversions at island and coastal sites suggest that one standard deviation of MODIS effective radius retrievals falls within Δreff = ±0.11 μm. The accuracy of the MODIS retrievals suggests that the product can be used to help narrow the uncertainties associated with aerosol radiative forcing of global climate.
Suborbital Measurements of Spectral Aerosol Optical Depth and Its Variability at Subsatellite Grid Scales in Support of CLAMS 2001
Authors: Redemann J. , Schmid B. , Eilers J. A. , Kahn R. , Levy R. C. , Russell P. B. , Livingston J. M. , Hobbs P. V. , Smith W. L. , Holben B. N. 
Published: April 2005

Abstract
As part of the Chesapeake Lighthouse and Aircraft Measurements for Satellites (CLAMS) experiment, 10 July–2 August 2001, off the central East Coast of the United States, the 14-channel NASA Ames Airborne Tracking Sunphotometer (AATS-14) was operated aboard the University of Washington’s Convair 580 (CV-580) research aircraft during 10 flights (∼45 flight hours). One of the main research goals in CLAMS was the validation of satellite-based retrievals of aerosol properties. The goal of this study in particular was to perform true over-ocean validations (rather than over-ocean validation with ground-based, coastal sites) at finer spatial scales and extending to longer wavelengths than those considered in previous studies. Comparisons of aerosol optical depth (AOD) between the Aerosol Robotic Network (AERONET) Cimel instrument at the Chesapeake Lighthouse and airborne measurements by AATS-14 in its vicinity showed good agreement with the largest r-square correlation coefficients at wavelengths of 0.38 and 0.5 μm (&gt;0.99). Coordinated low-level flight tracks of the CV-580 during Terra overpass times permitted validation of over-ocean Moderate Resolution Imaging Spectroradiometer (MODIS) level 2 (MOD04_L2) multiwavelength AOD data (10 km × 10 km, nadir) in 16 cases on three separate days. While the correlation between AATS-14- and MODIS-derived AOD was weak with an r square of 0.55, almost 75% of all MODIS AOD measurements fell within the prelaunch estimated uncertainty range Δτ = ±0.03 ± 0.05τ. This weak correlation may be due to the small AODs (generally less than 0.1 at 0.5 μm) encountered in these comparison cases. An analogous coordination exercise resulted in seven coincident over-ocean matchups between AATS-14 and Multiangle Imaging Spectroradiometer (MISR) measurements. The comparison between AATS-14 and the MISR standard algorithm regional mean AODs showed a stronger correlation with an r square of 0.94. However, MISR AODs were systematically larger than the corresponding AATS values, with an rms difference of ∼0.06. AATS data collected during nine extended low-level CV-580 flight tracks were used to assess the spatial variability in AOD at horizontal scales up to 100 km. At UV and midvisible wavelengths, the largest absolute gradients in AOD were 0.1–0.2 per 50-km horizontal distance. In the near-IR, analogous gradients rarely reached 0.05. On any given day, the relative gradients in AOD were remarkably similar for all wavelengths, with maximum values of 70% (50 km)−1 and more typical values of 25% (50 km)−1. The implications of these unique measurements of AOD spatial variability for common validation practices of satellite data products and for comparisons to large-scale aerosol models are discussed.