bluuebunny/crossref_metadata_2025_split huggingface dataset:
Lignin bioconversion based on genome mining for ligninolytic genes in Erwinia billingiae QL-Z3
Authors: Zhao Shuting , Deng Dongtao , Wan Tianzheng , Feng Jie , Deng Lei , Tian Qianyi , Wang Jiayu , Aiman Umm E. , Mukhaddi Balym , Hu Xiaofeng , Chen Shaolin , Qiu Ling , Huang Lili , Wei Yahong 
Published: February 2024

Abstract
Background
Bioconversion of plant biomass into biofuels and bio-products produces large amounts of lignin. The aromatic biopolymers need to be degraded before being converted into value-added bio-products. Microbes can be environment-friendly and efficiently degrade lignin. Compared to fungi, bacteria have some advantages in lignin degradation, including broad tolerance to pH, temperature, and oxygen and the toolkit for genetic manipulation.

Results
Our previous study isolated a novel ligninolytic bacterial strain Erwinia billingiae QL-Z3. Under optimized conditions, its rate of lignin degradation was 25.24% at 1.5 g/L lignin as the sole carbon source. Whole genome sequencing revealed 4556 genes in the genome of QL-Z3. Among 4428 protein-coding genes are 139 CAZyme genes, including 54 glycoside hydrolase (GH) and 16 auxiliary activity (AA) genes. In addition, 74 genes encoding extracellular enzymes are potentially involved in lignin degradation. Real-time PCR quantification demonstrated that the expression of potential ligninolytic genes were significantly induced by lignin. 8 knock-out mutants and complementary strains were constructed. Disruption of the gene for ELAC_205 (laccase) as well as EDYP_48 (Dyp-type peroxidase), ESOD_1236 (superoxide dismutase), EDIO_858 (dioxygenase), EMON_3330 (monooxygenase), or EMCAT_3587 (manganese catalase) significantly reduced the lignin-degrading activity of QL-Z3 by 47–69%. Heterologously expressed and purified enzymes further confirmed their role in lignin degradation. Fourier transform infrared spectroscopy (FTIR) results indicated that the lignin structure was damaged, the benzene ring structure and groups of macromolecules were opened, and the chemical bond was broken under the action of six enzymes encoded by genes. The abundant enzymatic metabolic products by EDYP_48, ELAC_205 and ESOD_1236 were systematically analyzed via liquid chromatography–mass spectrometry (LC–MS) analysis, and then provide a speculative pathway for lignin biodegradation. Finally, The activities of ligninolytic enzymes from fermentation supernatant, namely, LiP, MnP and Lac were 367.50 U/L, 839.50 U/L, and 219.00 U/L by orthogonal optimization.

Conclusions
Our findings provide that QL-Z3 and its enzymes have the potential for industrial application and hold great promise for the bioconversion of lignin into bioproducts in lignin valorization.
Stress-induced hyperglycemia is associated with the mortality of thrombotic thrombocytopenic purpura patients
Authors: Hu Lingling , Wang Jing , Jin Xiaxia , Lu Guoguang , Fang Meidan , Shen Jian , Tung Tao-Hsin , Shen Bo 
Published: February 2024

Abstract
Background
Thrombotic thrombocytopenic purpura (TTP) is a rare thrombotic microangiopathy with a rapid progression and high mortality rate. We aimed to explore early risk factors for mortality in patients with TTP.

Methods
We conducted a retrospective analysis of 42 TTP patients that were admitted to our hospital between 2000 and 2021, with a median age of 49 (29–63) years. Risk factors for mortality were evaluated using multivariate logistic regression. Receiver operating characteristic curve analysis was used to determine the cut-off value of glucose for predicting mortality in patients, which was validated by comparison to a similar cohort in the published literature.

Results
Elevated glucose level and reduced red blood cells (RBC) counts were risk factors for mortality in patients with TTP (glucose, odds ratio and 95% confidence interval: 2.476 [1.368–4.484]; RBC, odds ratio and 95% confidence interval: 0.095 [0.011–0.799]). The area under the curve of glucose was 0.827, and the cut-off value was 9.2 mmol/L, with a sensitivity of 75.0% and specificity of 95.8%. A total of 26 cases from the validation cohort had a sensitivity of 71.0% and a specificity of 84.0%. The change trends of the TTP-related laboratory indices differed during hospitalization.

Conclusion
Hyperglycemia at admission and unstable blood glucose levels during hospitalization may be potential predictors of mortality for TTP patients. The improved prognosis was associated with the recovery of platelet counts and a significant decrease in serum lactate dehydrogenase after five days of treatment.
Global trends and developments in mindfulness interventions for diabetes: a bibliometric study
Authors: Jiang Sijia , Pan Xiaoli , Li Hansen , Su Yuqin 
Published: February 2024

Abstract
Background
Diabetes is a metabolic disorder posing a global threat to health. Many scholars are dedicated to developing non-pharmacological therapies, and mindfulness intervention is among the potentially effective approaches. Due to the rapid increase in relevant research in recent years, along with the diverse focus and interventions used in studies, it has become challenging for practitioners to quickly comprehend the key features of this field and the directions worth paying attention to. Bibliometric analysis, in response, can help scholars understand this field and identify points of interest.

Methods
Publications related to mindfulness intervention in diabetes from the establishment of the Web of Science Core Collection (WOSCC) to September 2023 were searched. We employed four bibliometric techniques: General Analysis of Publications, Collaborative Network Analysis, Co-citation Analysis, and Keyword Analysis. The CiteSpace 6.1.R was used to analyze the literature with the strongest citation bursts, while VOSviewer 1.6.13 was used to provide visualizations of publicly available data by analyzing co-citations or co-authorship affiliations.

Results
We found a total of 387 articles. The results indicate that research on this topic has been steadily increasing over time. The United States is the top producer of relevant publications, with Tilburg University being the institution that publishes the most articles. The journal “Mindfulness” has the highest publication count. In the collaborative network analysis, the United States emerged as the main hub for global cooperation in this research field, contributing 182 articles with a total of 5872 citations. The journal “Diabetes Care” was frequently cited and played a central role. The keyword analysis revealed that researchers have shown a strong interest in how mindfulness interventions affect the mental health of diabetic individuals. Additionally, there is a focus on studying elderly diabetic groups and exploring how mindfulness interventions impact metabolic diseases. These areas are currently the main research priorities.

Conclusion
Our findings demonstrate the current trend and hotspots in mindfulness intervention and offer some directions for future research.
Relationship between a body shape index and muscle strength index in Chinese university students: a cross-sectional survey
Authors: Pi Qing , Xu Jiali , Sha Mian , Liu Xiangdong 
Published: February 2024

Abstract
Background
The problem of overweight obesity and decrease in muscle strength among university students has become an indisputable fact. In this study, a comprehensive index reflecting obesity degree a body shape index (ABSI) and a comprehensive index reflecting muscle strength muscle strength index (MSI) were studied to analyze the cross-sectional correlations existing between them.

Methods
This study began recruiting participants and conducting the test survey in April 2022 and closed in July 2022. Basic condition, height, weight, waist circumference, grip strength, pull-up (boys), bent-leg sit-up (girls), and standing long jump were tested on 12,046 (boys: 6011, 49.90%) university students aged 19–22 years in China, and ABSI and MSI were calculated separately. ABSI was categorized into 5 groups according to age and sex, namely ABSI < 5th percentile (A), 5th ≤ ABSI < 25th percentile (B), 25th ≤ ABSI < 75th percentile (C), 75th ≤ ABSI < 95th percentile (D) and ABSI ≥ 95th percentile (E). The comparison of MSI between different ABSI groups was performed using effect size, and the association between them was performed by curve estimation analysis.

Results
The association between ABSI and MSI of Chinese university students showed an inverted “U” curve. The effect of increased ABSI on MSI was greater in university girls compared to boys. The ABSI of boys was (0.080 ± 0.010) and MSI was (-0.005 ± 2.080); the ABSI of girls was (0.079 ± 0.008) and MSI was (-0.017 ± 1.867). Overall, university students ABSI was at a relatively high point for MSI between 0.050 and 0.100. The university students ABSI at 0.150 had an MSI of -1.229 for boys and − 2.779 for girls.

Conclusion
The ABSI of Chinese university students showed an inverted “U”-shaped curve relationship with MSI, and university students with low or high ABSI had lower MSI. The effect of increasing ABSI on the decrease of MSI was more obvious for girls than for boys.
Immune endotyping and gene expression profile of patients with chronic rhinosinusitis with nasal polyps in the aspirin-exacerbated respiratory disease (AERD) and the non-AERD subgroups
Authors: Nazari Javad , Shahba Faezeh , Jafariaghdam Negin , Mohebbi Saleh , Arshi Saba , Bemanian Mohammad Hassan , Fallahpour Morteza , Shokri Sima , Atashrazm Fatemeh , Amini Saeed , Roomiani Maryam , Jamee Mahnaz , Babaheidarian Pegah , Khoshmirsafa Majid , Nabavi Mohammad 
Published: February 2024

Abstract
Background
Chronic Rhinosinusitis (CRS) is a paranasal sinus inflammatory disease and is divided into two subgroups defined as CRS with nasal polyps (CRSwNP) and CRS without nasal polyps (CRSsNP). CRSwNP displays a T helper (Th)2 biased phenotype, and based on sensitivity or tolerance to aspirin or non-steroidal anti-inflammatory drugs (NSAID), is further subdivided into Aspirin-exacerbated respiratory disease (AERD) and non-AERD groups. Considering the challenge of diagnosis and treatment in patients with CRSwNP, particularly the AERD subtype, and the significance of endotyping in these patients, we examined the immune profile and endotyping based on gene expression analysis in the AERD and the non-AERD groups of patients with CRSwNP.

Material and method
In this study, 21 patients were enrolled and were categorized into AERD (N = 10) and non-AERD (N = 11) groups based on their sensitivity to aspirin. After the special washing period, nasal polyps were biopsied in both groups, and the infiltration of eosinophils, neutrophils, plasma cells, and lymphocytes was compared between the AERD and the non-AERD groups. Also, gene expression levels of transcription factors including Tbet, GATA3, RoRγt, and FoxP3 and inflammatory cytokines including interleukin (IL)1β, IL1RAP (IL1 receptor accessory protein), IL2, IL4, IL5, IL10, IL13, IL17, TNFα, and IFNγ were investigated by quantitative Real-time PCR (qRT-PCR). Statistical analyses were performed using analytical tests including Kolmogorov–Smirnov, Mann-Whitney, and T-test. A P value less than 0.05 was considered statistically significant.

Results
The mean ± SD age of the studied groups was 37 ± 8.7 years old (21–50) for the AERD, and 40.4 ± 7.7 years old (31–52) for the non-AERD. LMS/EPOS/SNOT scores and pulmonary function tests showed no difference between the two groups. Serum immunoglobulin E (IgE) levels were found to be higher in patients with AERD (p = 0.04), however, the peripheral blood counts of eosinophils were comparable in the two groups. In the histopathologic analysis, the AERD group showed higher percentages of eosinophils (p = 0.04), neutrophils (p = 0.04), and plasma cells (p = 0.04) than the non-AERD group. Additionally, the gene expression levels of GATA3 (p = 0.001), IL4 (p = 0.04), IL5 (p = 0.007), and IL17 (p = 0.03) were significantly higher in the AERD than the non-AERD groups.

Conclusion
Higher gene expression levels of GATA3, IL4, IL5, and IL17 were observed in the AERD group compared with the non-AERD group. These findings point to distinct patterns of inflammation in patients with AERD, with a predominance of Th2 inflammation.
Optimizing survival in Russell’s viper bite cases in low-resource setting: two case reports
Authors: Sharif Mohiuddin , Amin Mohammad Robed , Barshan Anindita Das , Hasan Mohammad Jahid , Faiz M. A. 
Published: February 2024

Abstract
Introduction
Snakebite envenomation poses a significant health risk, particularly in low-resource settings where access to proper treatment is limited.

Case presentation
This study reports two cases of Russell's viper bites in rural Bangladesh, involving 48 and 35-year-old Bangladesh males, respectively, and highlights the difficulties in providing adequate medical care and in treating any complications that may arise. Both cases involved delayed access to healthcare, initial visit to traditional healers, and the development of severe complications such as coagulopathy, renal failure. After the intervention both cases survived which is scarce in low resource settings.

Conclusion
The cases underscore the importance of early recognition, appropriate management, and improved healthcare infrastructure to optimize survival outcomes in snakebite cases in resource-limited settings. These cases will contribute valuable insights to the field of snakebite management and provide guidance for improving survival rates and outcomes among snakebite victims in Bangladesh.
A report on palaeontological excavations and sampling in mudrocks: some guidelines
Authors: Etter Walter 
Published: February 2024

AbstractMore than 60% of the world’s sedimentary rocks are mudrocks (Potter et al., 1980; Schieber, 1998; Potter, 2003; the term mudrock is favored here over mudstone because the latter term was used to characterize a limestone texture; Dunham, 1962). From a palaeontological perspective these are, compared to sandstones and limestones, heavily undersampled. The main reason for this is that mudrocks decay in surface exposures to small chips, which develop with sun/heat and rain into an awkward pulp. The decay of the mudstone concomitantly destroys all macrofossils which are not durable. This comprises fossils with an aragonitic or delicate calcitic shell unless they are preserved as pyritic or internal calcitic molds or preserved within calcareous concretions. Therefore, most of the fossils are not recorded in surface exposures. In addition, sedimentologic investigations of mudrocks are hampered because (i) compaction makes sedimentary structures hardly recognizableand (ii) good thin sections of mudrocks are exceedingly difficult to manufacture. For micropalaeontological investigations, mudrocks rich in organic material are especially difficult to process. Standard treatments with boiling water, sodium carbonate solution, or peroxide H2O2 generally fail to dissolve much of the sediment so that the fine fraction (and in mudrocks we usually need the 63μm-fraction) largely consists of clay particle aggregates. Yet there are methods to dissolve these aggregates. Otherwise, picking the microfossils would become extremely laborious. In this paper, some guidelines for successful palaeontological work in mudrocks are outlined. These are based on the author’s personal experience. Examples from Jurassic mudrocks of Switzerland/Europe show that such excavations can be very rewarding.
Phytocompounds as potential inhibitors of mycobacterial multidrug efflux pump Rv1258c: an in silico approach
Authors: Biswas Santasree Sarma , Roy Jayanti Datta 
Published: February 2024

AbstractThe number of infections and deaths caused by multidrug resistant (MDR) tuberculosis is increasing globally. One of the efflux pumps, that makesMycobacterium tuberculosisresistant to a number of antibiotics and results in unfavourable treatment results is Tap or Rv1258c. In our study, we tried to utilize a rational drug design technique using in silico approach to look for an efficient and secure efflux pump inhibitor (EPI) against Rv1258c. The structure of Rv1258c was built using the homology modeling tool MODELLER 9.24. 210 phytocompounds were used for blind and site-specific ligand docking against the modelled structure of Rv1258c using AutoDock Vina software. The best docked plant compounds were further analysed for druglikeness and toxicity. In addition to having excellent docking scores, two plant compounds—ellagic acid and baicalein—also exhibited highly desirable drug-like qualities. These substances outperform more well-known EPIs like piperine and verapamil in terms of effectiveness. This data shows that these two compounds might be further investigated for their potential as Rv1258c inhibitors.
Social connection measures for older adults living in long-term care homes: a systematic review protocol
Authors: Liougas Madalena P. , Sommerlad Andrew , O’Rourke Hannah M. , McGilton Katherine S. , Bethell Jennifer 
Published: February 2024

Abstract
Background
Various measures have assessed social connection in long-term care (LTC) home residents. However, they use inconsistent terminology, conceptualizations, and operationalizations of social connection. In this systematic review protocol, we propose a study that will characterize measures that assess aspects of LTC home residents’ social connection using a unified conceptual model. The objectives are to (1) describe and analyze the measures and (2) evaluate their measurement properties.

Methods
A literature search was conducted in MEDLINE ALL (Ovid), Embase Classic and Embase (Ovid), Emcare Nursing (Ovid), APA PsycInfo (Ovid), Scopus, CINAHL Complete (EBSCOhost), AgeLine (EBSCOhost), and Sociological Abstracts (ProQuest). We will include primary research papers with no language limit, published from database inception. We will include studies of a measure of any aspect of social connection in LTC home residents that report at least one measurement property. Independently, two reviewers will screen titles and abstracts, review full-text articles against eligibility criteria, and extract data from included studies. In objective 1, we will analyze identified tools using an adapted framework method. In objective 2, we will evaluate each measure’s measurement properties using COnsensus-based Standards for the selection of health Measurement INstruments (COSMIN) methodology. We will engage experts and stakeholders to assist with interpreting results and translating knowledge.

Discussion
Our findings will inform the social connection in long-term care home residents (SONNET) study’s development of a novel, person-centered measure for social connection in LTC home settings. We will present our findings in academic and non-academic forums, including conferences, peer-reviewed journals, and other publications.

Systemic review registration
Prospero—“Systematic review of measures of social connection used in long-term care home research.” CRD42022303526.
A secure and efficient electronic medical record data sharing scheme based on blockchain and proxy re-encryption
Authors: Liu Guijiang , Xie Haibo , Wang Wenming , Huang Haiping 
Published: February 2024

AbstractWith the rapid development of the Internet of Medical Things (IoMT) and the increasing concern for personal health, sharing Electronic Medical Record (EMR) data is widely recognized as a crucial method for enhancing the quality of care and reducing healthcare expenses. EMRs are often shared to ensure accurate diagnosis, predict prognosis, and provide health advice. However, the process of sharing EMRs always raises significant concerns about potential security issues and breaches of privacy. Previous research has demonstrated that centralized cloud-based EMR systems are at high risk, e.g., single points of failure, denial of service (DoS) attacks, and insider attacks. With this motivation, we propose an EMR sharing scheme based on a consortium blockchain that is designed to prioritize both security and privacy. The interplanetary file system (IPFS) is used to store the encrypted EMR while the returned hash addresses are recorded on the blockchain. Then, the user can authorize other users to decrypt the EMR ciphertext via the proxy re-encryption algorithm, ensuring that only authorized personnel may access the files. Moreover, the scheme attains personalized access control and guarantees privacy protection by employing attribute-based access control. The safety analysis shows that the designed scheme meets the expected design goals. Security analysis and performance evaluation show that the scheme outperforms the comparison schemes in terms of computation and communication costs.
Large-scale genotypic identification reveals density-dependent natal dispersal patterns in an elusive bird of prey
Authors: Penttinen Ida , Nebel Carina , Stjernberg Torsten , Kvist Laura , Ponnikas Suvi , Laaksonen Toni 
Published: February 2024

AbstractBackgroundNatal dispersal, the distance between site of birth and site of first breeding, has a fundamental role in population dynamics and species’ responses to environmental changes. Population density is considered a key driver of natal dispersal. However, few studies have been able to examine densities at both the natal and the settlement site, which is critical for understanding the role of density in dispersal. Additionally, the role of density on natal dispersal remains poorly understood in long-lived and slowly reproducing species, due to their prolonged dispersal periods and often elusive nature. We studied the natal dispersal of the white-tailed eagle (Haliaeetus albicilla) in response to local breeder densities. We investigated the effects of the number of active territories around the natal site on (a) natal dispersal distance and (b) the difference between natal and settlement site breeder density. We were interested in whether eagles showed tendencies of conspecific attraction (positive density-dependence) or intraspecific competition (negative density-dependence) and how this related to settlement site breeder density.MethodsWe used a combination of long-term visual and genotypic identification to match individuals from their breeding site to their natal nest. We identified natal dispersal events for 355 individuals hatched between 1984 and 2015 in the Baltic Sea coast and Arctic areas of Finland. Of those, 251 were identified by their genotype.ResultsIndividuals born in high-density areas dispersed shorter distances than those born in low-density areas, but settled at lower density breeding sites in comparison to their natal site. Eagles born in low natal area densities dispersed farther but settled in higher density breeding sites compared to their natal site.ConclusionsWe show that eagles might be attracted by conspecifics (positive density-dependence) to identify high-quality habitats or find mates, but do not settle in the most densely populated areas. This indicates that natal dispersal is affected by an interplay of conspecific attraction and intraspecific competition, which has implications for population dynamics of white-tailed eagles, but also other top predators. Furthermore, our study demonstrates the value of long-term collection of both nestling and (non-invasive) adult DNA samples, and thereafter using genotype matching to identify individuals in long-lived and elusive species.