bluuebunny/crossref_metadata_2025_split huggingface dataset:
An effective treatment in Erdheim Chester disease: vemurafenib: a case report
Authors: Bozan Ersin , Darçın Tahir , Yaman Samet , Yiğenoğlu Tuğçe Nur , Kızıl Çakar Merih , Dal Mehmet Sinan , Altuntaş Fevzi 
Published: October 2023

Abstract
Background
Erdheim Chester disease (ECD) is a rare disease with multisystemic involvement in the group of non-langerhans cell histiocytosis. Although nearly 100 years have passed since its definition, the number of cases reported all over the world is below 1000. In addition to the rarity of the disease, low awareness seems to play a role in this.

Case presentation
47-year-old white caucasian women patient who presented to our clinic with symptoms of weakness-fatigue as well as increasing pain in the knees and ptosis in the left eye. Result of the patient's bone biopsy, ECD was considered pathologically and BRAF V600E mutation was shown molecularly. After presenting the clinical, laboratory and other examination results of the case, the dramatic response seen with targeted therapy will be discussed.

Conclusions
BRAF V600E mutation is frequently seen in ECD. Vemurafenib plays an active role in targeted therapy.
The prevalence of rheumatic heart disease in Ethiopia: a systematic review and meta-analysis
Authors: Berhanu Hiwot , Mekonnen Yimer , Workicho Abdulhalik , Hassen Kalkidan , Negeri Zenebe , Sudhakar Morankar , Mitiku Shimelis , Mossie Andualem 
Published: October 2023

AbstractGlobally, more than 33 million people are living with rheumatic heart disease (RHD). A high prevalence of the disease is observed in people with poor socio-economic status, overcrowding, and low access to medical facilities. Even though different studies have been conducted in different settings, there is no reliable data regarding RHD prevalence. Therefore, the aim of this systematic review and meta-analysis was to estimate the pooled prevalence of RHD in Ethiopia. PubMed/Medline, SCOPUS, HINARI, and Google Scholar databases were used to search for peer-reviewed articles. Articles published in English between the years 1992 and 2022 September were considered. The pooled prevalence of RHD was calculated using a random-effect model at a 95% confidence interval, including the weight of each study. Finally, statistical meta-analysis STATA version 16.0 software was used to calculate the pooled prevalence of RHD.A total of twelve cross-sectional studies were included in the meta-analysis. Individual study prevalence ranges from 0.32 to 32.78%. The pooled prevalence of RHD was 3.19% (95% CI: 1.46–5.56%). The prevalence was higher among the population who visited hospitals at 5.42% (95% CI: 1.09–12.7%) compared to schoolchildren at 0.73% (95% CI: 0.30–1.34%) and community-based studies at 3.83% (95% CI: 3.16–4.55%). Addis Ababa had the lowest prevalence of RHD (0.75% (95% CI: 0.38–1.25%), whereas the highest prevalence was observed in the Amhara region (8.95% (95% CI: 7.21–11.06%). A significant variation in the overall estimated prevalence of RHD was not observed between males and females.Trial registration Protocol registration (PROSPERO): CRD42021251553, Date of registration May 28 2021
The impact of antidepressants and human development measures on the prevalence of sadness, worry and unhappiness: cross-national comparison
Authors: Mulder Roger T. , Jorm Anthony F. 
Published: October 2023

Summary
Depression is a major public health concern. Depressed individuals have received increasing treatment with antidepressants in Western countries. In this study, we examine the relationship among individual symptoms (sadness, worry and unhappiness), human development factors and antidepressant use in 29 OECD countries. We report that increased antidepressant prescribing is not associated with decreased prevalence of sadness, worry or unhappiness. However, income, education and life expectancy (measured using the Human Development Index) are associated with lower prevalence of all these symptoms. This suggests that increasing spending on depression treatment may not be as effective as general public health interventions at reducing depression in communities.
Signalling pathway crosstalk stimulated by L-proline drives mouse embryonic stem cells to primitive-ectoderm-like cells
Authors: Glover Hannah J. , Holliday Holly , Shparberg Rachel A. , Winkler David , Day Margot , Morris Michael B. 
Published: October 2023

ABSTRACT
The amino acid L-proline exhibits growth factor-like properties during development – from improving blastocyst development to driving neurogenesis in vitro. Addition of 400 μM L-proline to self-renewal medium drives naïve mouse embryonic stem cells (ESCs) to early primitive ectoderm-like (EPL) cells – a transcriptionally distinct primed or partially primed pluripotent state. EPL cells retain expression of pluripotency genes, upregulate primitive ectoderm markers, undergo a morphological change and have increased cell number. These changes are facilitated by a complex signalling network hinging on the Mapk, Fgfr, Pi3k and mTor pathways. Here, we use a factorial experimental design coupled with statistical modelling to understand which signalling pathways are involved in the transition between ESCs and EPL cells, and how they underpin changes in morphology, cell number, apoptosis, proliferation and gene expression. This approach reveals pathways which work antagonistically or synergistically. Most properties were affected by more than one inhibitor, and each inhibitor blocked specific aspects of the naïve-to-primed transition. These mechanisms underpin progression of stem cells across the in vitro pluripotency continuum and serve as a model for pre-, peri- and post-implantation embryogenesis.
A gene regulatory network combining Pax3/7, Sox10 and Mitf generates diverse pigment cell types in medaka and zebrafish
Authors: Miyadai Motohiro , Takada Hiroyuki , Shiraishi Akiko , Kimura Tetsuaki , Watakabe Ikuko , Kobayashi Hikaru , Nagao Yusuke , Naruse Kiyoshi , Higashijima Shin-ichi , Shimizu Takashi , Kelsh Robert N. , Hibi Masahiko , Hashimoto Hisashi 
Published: October 2023

ABSTRACT
Neural crest cells generate numerous derivatives, including pigment cells, and are a model for studying how fate specification from multipotent progenitors is controlled. In mammals, the core gene regulatory network for melanocytes (their only pigment cell type) contains three transcription factors, Sox10, Pax3 and Mitf, with the latter considered a master regulator of melanocyte development. In teleosts, which have three to four pigment cell types (melanophores, iridophores and xanthophores, plus leucophores e.g. in medaka), gene regulatory networks governing fate specification are poorly understood, although Mitf function is considered conserved. Here, we show that the regulatory relationships between Sox10, Pax3 and Mitf are conserved in zebrafish, but the role for Mitf is more complex than previously emphasized, affecting xanthophore development too. Similarly, medaka Mitf is necessary for melanophore, xanthophore and leucophore formation. Furthermore, expression patterns and mutant phenotypes of pax3 and pax7 suggest that Pax3 and Pax7 act sequentially, activating mitf expression. Pax7 modulates Mitf function, driving co-expressing cells to differentiate as xanthophores and leucophores rather than melanophores. We propose that pigment cell fate specification should be considered to result from the combinatorial activity of Mitf with other transcription factors.
A model of replicating coupled oscillators generates naturally occurring cell networks
Authors: Smart Matthew , Shvartsman Stanislav Y. , Nunley Hayden 
Published: October 2023

ABSTRACT
When a founder cell and its progeny divide with incomplete cytokinesis, a network forms in which each intercellular bridge corresponds to a past mitotic event. Such networks are required for gamete production in many animals, and different species have evolved diverse final network topologies. Although mechanisms regulating network assembly have been identified in particular organisms, we lack a quantitative framework to understand network assembly and inter-species variability. Motivated by cell networks responsible for oocyte production in invertebrates, where the final topology is typically invariant within each species, we devised a mathematical model for generating cell networks, in which each node is an oscillator and, after a full cycle, the node produces a daughter to which it remains connected. These cell cycle oscillations are transient and coupled via diffusion over the edges of the network. By variation of three biologically motivated parameters, our model generates nearly all such networks currently reported across invertebrates. Furthermore, small parameter variations can rationalize cases of intra-species variation. Because cell networks outside of the ovary often form less deterministically, we propose model generalizations to account for sources of stochasticity.
Author Country of Origin and Attention on Open Science Platforms: Evidence from COVID-19 Preprints
Authors: Fry Caroline , MacGarvie Megan 
Published: October 2023

Online platforms such as preprint servers have become an important way to disseminate new scientific knowledge prior to peer review. However, little is known about how attention to preprints may vary across authors from different countries of origin, particularly relative to evaluation in expert-controlled systems such as scientific journals. This study explores how readers allocated attention across preprints in the initial months of the COVID-19 pandemic, a time when there was an increase in demand for new research and a corresponding increase in the use of preprint platforms around the world. We find that, after controlling carefully for article quality and topic, as well as the prominence of the preprint’s ultimate publication outlet, preprints with authors from Chinese institutions receive less attention, and preprints with authors from U.S. institutions receive more attention, than preprints with authors from the rest of the world. In an exploration of potential mechanisms driving the observed effects, we find evidence that when evaluation is more constrained, in terms of lack of knowledge or expertise and increase in time pressure, audiences tend to make greater use of preprint authors’ country of origin as a proxy for quality or relevance. The results suggest that geographic biases may persist or even be exacerbated on platforms designed to promote unfettered access to early research findings. This paper was accepted by Toby Stuart, entrepreneurship and innovation. Supplemental Material: The data files and online appendix are available at https://doi.org/10.1287/mnsc.2023.4936 .
Shapley–Scarf Housing Markets: Respecting Improvement, Integer Programming, and Kidney Exchange
Authors: Biró Péter , Klijn Flip , Klimentova Xenia , Viana Ana 
Published: October 2023

In a housing market of Shapley and Scarf, each agent is endowed with one indivisible object and has preferences over all objects. An allocation of the objects is in the (strong) core if there exists no (weakly) blocking coalition. We show that, for strict preferences, the unique strong core allocation “respects improvement”—if an agent’s object becomes more desirable for some other agents, then the agent’s allotment in the unique strong core allocation weakly improves. We extend this result to weak preferences for both the strong core (conditional on nonemptiness) and the set of competitive allocations (using probabilistic allocations and stochastic dominance). There are no counterparts of the latter two results in the two-sided matching literature. We provide examples to show how our results break down when there is a bound on the length of exchange cycles. Respecting improvements is an important property for applications of the housing markets model, such as kidney exchange: it incentivizes each patient to bring the best possible set of donors to the market. We conduct computer simulations using markets that resemble the pools of kidney exchange programs. We compare the game-theoretical solutions with current techniques (maximum size and maximum weight allocations) in terms of violations of the respecting improvement property. We find that game-theoretical solutions fare much better at respecting improvements even when exchange cycles are bounded, and they do so at a low efficiency cost. As a stepping stone for our simulations, we provide novel integer programming formulations for computing core, competitive, and strong core allocations. Funding: P. Biró gratefully acknowledges financial support from the Hungarian Scientific Research Fund, OTKA [Grant K143858] and the Hungarian Academy of Sciences [Grant LP2021-2]. F. Klijn gratefully acknowledges financial support from AGAUR–Generalitat de Catalunya [Grants 2017-SGR-1359 and 2021-SGR-00416] and the Spanish Agencia Estatal de Investigación [Grants ECO2017-88130-P and PID2020-114251GB-I00] (funded by MCIN/AEI/10.13039/501100011033) and the Severo Ochoa Programme for Centres of Excellence in R&D (Barcelona School of Economics) [Grant CEX2019-000915-S]. Research visits related to this work were financed by COST Action [Grant CA15210 ENCKEP], supported by COST (European Cooperation in Science and Technology), http://www.cost.eu/ .
Treatment of Peri-implantitis: Fiction or Reality? Part 1: Non-surgical and Surgical Management
Authors: Sousa Vanessa , Beltrán Víctor , Mardas Nikos , Nanayakkara Lochana , Donos Nikolaos 
Published: October 2023

Peri-implantitis is a biological complication characterized by an inflammatory process affecting the soft and hard tissues around an osseo-integrated load-bearing implant. Clinically, it results in progressive bone loss, pocket formation, bleeding and/or suppuration and leads to implant loss. Although the main aetiological factor is bacterial biofilms, the clinical presentation and progression of peri-implantitis is exacerbated by several local, systemic and iatrogenic factors. Treatment protocols of peri-implantitis include various decontamination procedures of the exposed implant surface. In this two-part series, we will review the available evidence for the non-surgical and surgical management of peri-implantitis (Part 1), and then we will discuss various modalities for implant surface decontamination (Part 2). CPD/Clinical Relevance: The pre-operative risk identification and management at both patient and site level, early diagnosis and regular supportive peri-implant care are fundamental for long term implant success and survival.
Sustainability of Different Fluoride Delivery Methods
Authors: Elleray Elizabeth , Lyne Alexandra , Duane Brett 
Published: October 2023

The impact of human-induced global warming is a present issue. The health and social care system is associated with significant use of resources and carbon emissions. The Greener NHS Programme is dedicated to promoting methods that enhance patient care while minimizing the healthcare industry's environmental impact. This article summarizes the evidence for the environmental sustainability of using the fluoride prevention methods that are recommended by the Department of Health. CPD/Clinical Relevance: The sustainability of the use of fluoride in the prevention of caries is an issue to consider.
VACCINATION AGAINST COVID-19 REDUCED THE MORTALITY RISK OF COVID-POSITIVE HIP FRACTURE PATIENTS TO BASELINE LEVELS: THE NATIONWIDE DATA-LINKED IMPACT PROTECT STUDY
Authors: Hall A.J. , Clement N.D. , Maclullich A.M.J. , White T.O. , Duckworth A.D. 
Published: October 2023

COVID-19 confers a three-fold increased mortality risk among hip fracture patients. The aims were to investigate whether vaccination was associated with: i) lower mortality risk, and ii) lower likelihood of contracting COVID-19 within 30 days of fracture.This nationwide cohort study included all patients aged >50 years with a hip fracture between 01/03/20-31/12/21. Data from the Scottish Hip Fracture Audit were collected and included: demographics, injury and management variables, discharge destination, and 30-day mortality status. These variables were linked to population-level records of COVID-19 vaccination and testing.There were 13,345 patients with a median age of 82.0 years (IQR 74.0–88.0), and 9329/13345 (69.9%) were female. Of 3022/13345 (22.6%) patients diagnosed with COVID-19, 606/13345 (4.5%) were COVID-positive within 30 days of fracture. Multivariable logistic regression demonstrated that vaccinated patients were less likely to be COVID-positive (odds ratio (OR) 0.41, 95% confidence interval (CI) 0.34–0.48, p<0.001) than unvaccinated patients. 30-day mortality rate was higher for COVID-positive than COVID-negative patients (15.8% vs 7.9%, p < 0.001). Controlling for confounders (age, sex, comorbidity, deprivation, pre-fracture residence), unvaccinated patients with COVID-19 had a greater mortality risk than COVID-negative patients (OR 2.77, CI 2.12–3.62, p < 0.001), but vaccinated COVID19-positive patients were not at increased risk (OR 0.93, CI 0.53–1.60, p = 0.783).Vaccination was associated with lower COVID-19 infection risk. Vaccinated COVID-positive patients had a similar mortality risk to COVID-negative patients, suggesting a reduced severity of infection. This study demonstrates the efficacy of vaccination in this vulnerable patient group, and presents essential data for future outbreaks.
Genetic Diversity in Pioneer Ants: The Cardiocondyla shuckardi Group
Authors: Heinze Jürgen , Hawkes Peter G. 
Published: October 2023

The myrmicine ant genus Cardiocondyla consists of around 80 species of small, inconspicuous ants, which live mainly in subtropical and tropical Africa, Eurasia, and Australia. Several species have been accidentally introduced to America and have also invaded numerous originally ant-free islands around the world. The diversity of life histories in this genus, with lethally fighting wingless males, dominance hierarchies among queens, and considerable variation in the sociogenetic organization of colonies across species, has made it an interesting model to investigate the evolution and behavioral ecology of reproductive strategies. Taxa of the African Cardiocondyla shuckardi group are of particular interest, as in a phylogeny they lie between facultatively polygynous species with fatal male competition and monogynous species with mutually tolerant males. Studies on male behavior and sociogenetics in C. “venustula,” a widespread member of the C. shuckardi group, showed that males defend small territories inside their subterraneous nests. At the same time, they revealed a surprisingly large variability in mtDNA haplotypes both within and between populations in South Africa, Angola, and Côte d’Ivoire. As the different lineages are very similar in morphology and nuclear markers, more research is needed to clarify the very confused taxonomic situation in this fascinating group of ants.
Symptomatic and asymptomatic enteric protozoan parasitic infection and their association with subsequent growth parameters in under five children in South Asia and sub-Saharan Africa
Authors: Das Rina , Palit Parag , Haque Md. Ahshanul , Levine Myron M. , Kotloff Karen L. , Nasrin Dilruba , Hossain M. Jahangir , Sur Dipika , Ahmed Tahmeed , Breiman Robert F. , Freeman Matthew C. , Faruque A. S. G. 
Published: October 2023

Background
Entamoeba histolytica, Giardia, and Cryptosporidium are common intestinal protozoan parasites that contribute to a high burden of childhood morbidity and mortality. Our study quantified the association between intestinal protozoan parasites and child anthropometric outcomes among children under-5.

Methods
We analyzed data from 7,800 children enrolled in the Global Enteric Multicenter Study (GEMS) across seven study sites that were positive for intestinal protozoan parasites between December 2007 and March 2011. Parasites were assessed using stool immunoassays (ELISA). We applied multiple linear regression to test the association between any or concurrent parasite and child anthropometric outcomes: length/height-for-age (HAZ), weight-for-age (WAZ), and weight-for-length/height (WHZ) z-score after 60 days of enrollment. Models were stratified by diarrheal symptoms, driven by the study design, and adjusted for potential covariates.

Findings
During the follow-up at day 60 after enrollment, child anthropometric outcomes, among the asymptomatic children showed, negative associations between Giardia with HAZ [β: -0.13; 95% CI: -0.17, -0.09; p<0.001] and WAZ [β -0.07; 95% CI: -0.11, -0.04; p<0.001], but not WHZ [β: -0.02; 95% CI:-0.06, 0.02; p = 0.36]; Cryptosporidium with WAZ [β: -0.15; 95% CI: -0.22, -0.09; p<0.001] and WHZ [β: -0.18; 95%CI: -0.25, -0.12; p<0.001], but not with HAZ [β: -0.03; 95% CI: -0.09, 0.04; p = 0.40]. For symptomatic children, no associations were found between Giardia and anthropometry; negative associations were found between Cryptosporidium with HAZ [β: -0.17; 95% CI: -0.23, -0.11; p<0.001], WAZ [β: -0.25; 95% CI: -0.31, -0.19; p<0.001] and WHZ [β: -0.23; 95% CI: -0.30, -0.17; p<0.001]. Among the asymptomatic 24–59 months children, Giardia had a negative association with HAZ [β: -0.09; 95% CI: -0.15, -0.04; p = 0.001]. No significant associations were found between E. histolytica with child growth.

Conclusions
While some studies have found that Giardia is not associated with (or protective against) acute diarrhea, our findings suggest that it is associated with growth shortfall. This observation underscores the need for preventive strategies targeting enteric protozoan parasites among young children, to reduce the burden of childhood malnutrition.
HIV burden and the global fast-track targets progress among pregnant women in Tanzania calls for intensified case finding: Analysis of 2020 antenatal clinics HIV sentinel site surveillance
Authors: Mboya Erick , Mizinduko Mucho , Balandya Belinda , Mushi Jeremiah , Sabasaba Amon , Amani Davis Elias , Kamori Doreen , Ruhago George , Faustine Prosper , Maokola Werner , Sambu Veryeh , Nyamuhagata Mukome , Jullu Boniphace S. , Juya Amir , Rugemalila Joan , Mgomella George , Asiimwe Sarah , Pembe Andrea B. , Sunguya Bruno 
Published: October 2023

BackgroundFor successful HIV response, updated information on the burden and progress toward HIV elimination targets are required to guide programmatic interventions. We used data from the 2020 HIV sentinel surveillance to update on the burden and factors associated with HIV infection, HIV status awareness, and ART coverage among pregnant women in Tanzania mainland.MethodologyWe conducted the surveillance in 159 antenatal clinics (ANC) from all 26 regions of Tanzania’s mainland from September to December 2020. This cross-sectional study included all pregnant women (≥15 years) on their first ANC visit in the current pregnancy during the survey period. Routine HIV counselling and testing were done at the facility. A multivariable logistic regression model accounting for the survey design was used to examine factors associated with HIV infections.Results38,783 pregnant women were enrolled (median age (IQR) = 25 (21–30) years). HIV prevalence was 5.9% (95%CI: 5.3% - 6.6%), ranging from 1.9% in the Manyara region to 16.4% in the Njombe region. Older age, lower and no education, not being in a marital union, and living in urban or semi-urban areas were associated with higher odds of HIV infection. HIV status awareness among women who tested positive was 70.9% (95% CI: 67.5%- 74.0%). ART coverage among those aware of their status was 91.6% (86.5%- 94.9%). Overall, 66.6% (95% CI: 62.4%- 70.6%) of all pregnant women who tested positive for HIV knew their HIV status and were on ART.ConclusionHIV is increasingly prevalent among pregnant women in Tanzania mainland especially among older, those with lower or no formal education, those outside marital union, and pregnant women living in urban and semi-urban areas. Behind the global fast-target to end HIV/ AIDS, about a third of pregnant women living with HIV initiating ANC were not on ART. Interventions to increase HIV testing and linkage to care among women of reproductive age should be intensified.