Dendrophanes: Water‐soluble dendritic receptors as models for buried recognition sites in globular proteins
Authors: Mattei Sebastiano , Wallimann Peter , Kenda Benoit , Amrein Walter , Diederich Fraçois 
Published: December 2004

AbstractWater‐soluble dendritic cyclophanes (dendrophanes) of first (1, 4), second (2 5), and third generation (3 6) with poly(ether amide) branching and 12, 36, and 108 terminal carboxylate groups, respectively, were prepared by divergent synthesis, and their molecular recognition properties in aqueous solutions were investigated. Dendrophanes 1–3 incorporate as the initiator core a tetraoxa[6.1.6.1]paracyclophane 7 with a suitably sized cavity for inclusion complexation of benzene or naphthalene derivatives. The initiator core in 4–6 is the [6.1.6.1]cyclo‐phane 8 shaped by two naphthyl(phenyl) methane units with a cavity suitable for steroid incorporation. The syntheses of 1–6 involved sequential peptide coupling to monomer 9, followed by ester hydrolysis (Schemes 1 and 4), Purification by gel‐permeation chromatography (GPC; Fig. 3) and full spectral characterization were accomplished at the stage of the intermediate poly(methyl carboxylates) 10–12 and 23–25, respectively. The third‐generation 108‐ester 25 was also independently prepared by a semi‐convergent synthetic strategy, starting from 4 (Scheme 5). All dendrophanes with terminal ester groups were obtained in pure form according to the 13C‐NMR spectral criterion (Figs, 1 and 5). The MALDI‐TOF mass spectra of the third‐generation derivative 25 (mol. wt. 19328 D) displayed the molecular ion as base peak, accompanied by a series of ions [M – n(1041 ± 7)]+, tentatively assigned as characteristic fragment ions of the poly(ether amide) cascade. A similar fragmentation pattern was also observed in the spectra of other higher‐generation poly(ether amide) dendrimers. Attempts to prepare monodisperse fourth‐generation dendrophanes by divergent synthesis failed. 1H‐NMR and fluorescence binding titrations in basic aqueous buffer solutions showed that dendrophanes 1–3 complexed benzene and naphthalene derivatives, whereas 4–6 bound the steroid testosterone. Complexation occurred exclusively at the cavity‐binding site of the central cyclophane core rather than in fluctuating voids in the dendritic branches, and the association strength was similar to that of the complexes formed by the initiator cores 7 and 8, respectively (Tables 1 and 3). Fluorescence titrations with 6‐(p‐toluidino)naphthalene‐2‐sulfonate as fluorescent probe in aqueous buffer showed that the micropolarity at the cyclophane core in dendrophanes 1‐3 becomes increasingly reduced with increasing size and density of the dendritic superstructure; the polarity at the core of the third‐generation compound 3 is similar to that of EtOH (Table 2). Host‐guest exchange kinetics were remarkably fast and, except for receptor 3, the stabilities of all dendrophane complexes could be evaluated by 1H‐NMR titrations. The rapid complexation‐decomplexation kinetics are explained by the specific attachment of the dendritic wedges to large, nanometer‐sized cyclophane initiator cores, which generates apertures in the surrounding dendritic superstructure.