bluuebunny/crossref_metadata_2025_split huggingface dataset:
Overlaps in the Transcriptional Profiles ofMedicago truncatulaRoots Inoculated with Two Different Glomus Fungi Provide Insights into the Genetic Program Activated during Arbuscular Mycorrhiza
Authors: Hohnjec Natalija , Vieweg Martin F. , Pühler Alfred , Becker Anke , Küster Helge 
Published: March 2005

AbstractArbuscular mycorrhiza (AM) is a widespread symbiotic association between plants and fungal microsymbionts that supports plant development under nutrient-limiting and various stress conditions. In this study, we focused on the overlapping genetic program activated by two commonly studied microsymbionts in addition to identifying AM-related genes. We thus applied 16,086 probe microarrays to profile the transcriptome of the model legume Medicago truncatula during interactions with Glomus mosseae and Glomus intraradices and specified a total of 201 plant genes as significantly coinduced at least 2-fold, with more than 160 being reported as AM induced for the first time. Several hundred genes were additionally up-regulated during a sole interaction, indicating that the plant genetic program activated in AM to some extent depends on the colonizing microsymbiont. Genes induced during both interactions specified AM-related nitrate, ion, and sugar transporters, enzymes involved in secondary metabolism, proteases, and Kunitz-type protease inhibitors. Furthermore, coinduced genes encoded receptor kinases and other components of signal transduction pathways as well as AM-induced transcriptional regulators, thus reflecting changes in signaling. By the use of reporter gene expression, we demonstrated that one member of the AM-induced gene family encoding blue copper binding proteins (MtBcp1) was both specifically and strongly up-regulated in arbuscule-containing regions of mycorrhizal roots. A comparison of the AM expression profiles to those of nitrogen-fixing root nodules suggested only a limited overlap between the genetic programs orchestrating root endosymbioses.
Clinical trials in urology: how many patients are required to achieve statistically significant results?
Authors: Parazzini Fabio , Colli Enrico , Chatenoud Liliane , Malvezzi Matteo , Olivieri Lorenza , Montorsi Francesco , La Vecchia Carlo 
Published: March 2005

SUMMARYDuring the clinical validation of a new drug there are several clinical phases. Once phase II studies have defined the efficacy of a new drug, clinical research is used to evaluate its significance in clinical practice, comparing it with other drugs or treatments in use for similar clinical conditions. The group of patients undergoing standard treatment (either untreated or treated with placebo) is thus used as a control; these phase III studies are termed ‘controlled clinical studies’. The general condition for comparing patients treated with the new drug is that they do not have characteristics (relevant to the study) that are systematically different from those in the control group. Randomization guarantees comparability between treated and untreated (or otherwise treated) patients. The comparability of the observations of the studied events are guaranteed by blinding and placebo. The fundamental question when designing a controlled clinical study to evaluate whether there are differences between two or more treatments is how many patients are needed. Generally, the smaller the clinically relevant differences in efficacy between treatments, the more patients are required, to provide sufficient statistical power and meaningful clinical results. A group of randomized patients represents the final point of sequential steps. Also of importance is to what kind of ‘population’ the results from the studied sample can be applied (qualitatively, not necessarily quantitatively), i.e. the general applicability of a study, or whether the findings can be used to treat future patients with the same or similar characteristics as those randomized, or to all patients with the same pathology. Answers to these questions depend on many aspects of the randomized selection mechanisms, the disease characteristics, and knowledge of the biological effects of the drug to be tested.
The origins, early development and status of Bourdieu's concept of ‘cultural capital’
Authors: Robbins Derek 
Published: March 2005

AbstractThe paper examines the context of the first introduction of the concept of ‘cultural capital’ in the sociology of education analyses undertaken in the early 1960s and published by Bourdieu in collaboration with Jean‐Claude Passeron in ‘Les étudiants et leurs études’ (1964a) and Les Héritiers (1964b). It first considers the cultural contexts within which Bourdieu's thinking about culture originated – both in relation to his social origins and in relation to his intellectual training. It then examines the extent to which Bourdieu's early anthropological research in Algeria was influenced by his knowledge of American acculturation theory. It concludes that Bourdieu sought to use acculturation theory in a distinctive way – one which he articulated more confidently as he explored the relationship between agency and structural explanation in the late 1960s and early 1970s. The specific educational researches which stimulated the articulation of the concept of ‘linguistic’ or ‘cultural’ capital belonged to the period in which Bourdieu was only just beginning to refine his post‐structuralist philosophy of social scientific explanation. To use these concepts now involves deploying them reflexively in accordance with Bourdieu's later thinking rather than at face value as they were first developed during the period in which he and Passeron were ‘apprentice’ researchers.
A follow up study of vibration induced white finger in compensation claimants
Authors: Bovenzi M , Della Vedova A , Negro C 
Published: March 2005

Aims:To follow up vibration induced white finger (VWF) in a selected group of 73 vibration exposed workers who claimed unsuccessfully for VWF compensation at a first examination.Methods:The VWF claimants were sent to our unit by the National Insurance Institute. The basic compensatory criteria included a positive history of VWF and abnormal cold response of the digital arteries. Following the first unsuccessful examination, over a mean time period of 4.1 (range 1–11) years the National Insurance Institute requested a second examination for all 73 claimants and a third examination for 29. During the follow up period, all subjects continued to work with vibratory tools.Results:There were 14 new cases who reported white finger during the follow up period. In the new VWF cases, finger blanching attacks became visible after about 3.5 years since the first examination. All incident cases of anamnestic VWF showed an abnormal cold response in the digital arteries and obtained compensation according to the basic compensatory criteria. In the entire sample of VWF claimants, there was a discrepancy between positive history of VWF symptoms at medical interview (55%) and abnormal cold provocation outcomes (19%). Digital arterial hyperresponsiveness to cold was associated with both VWF symptoms and the duration of vibration exposure since the first examination. Over the follow up period, a significant increase in the vasoconstrictor response to cold was observed in the vibration exposed workers with no symptoms of finger whiteness. Abnormal cold response was not associated with either age or smoking habit.Conclusions:Cold test measuring finger systolic blood pressure may be considered a useful laboratory method to confirm objectively VWF symptoms and to disclose abnormal cold induced vasoconstrictor response in vibration exposed workers with a negative history of VWF. Medical interview outcomes should be interpreted with caution in medicolegal situations involving VWF claimants.
Sublethal effects of Orimulsion-400® on eggs and larvae of Atlantic herring (Clupea harengus L.)
Authors: Williams Jim , Roderick Carol , Alexander Ross 
Published: March 2005

Abstract
Orimulsion-400® is a novel bitumen-emulsion power plant fuel. We exposed Atlantic herring (Clupea harengus L.) eggs to 0, 0.1, 1.0, 10, 100, and 1,000 mg/L concentrations of an oil-in-water dispersion of Orimulsion-400 for a 24-h period. No significant differences were found in daily mortality or percent hatch. The 1,000 mg/L exposure resulted in a significantly higher incidence of premature hatch, indicated by significantly shorter incubation time, significantly smaller total length and notochord length, and significantly greater yolk sac depth. The larvae exposed to the 1,000 mg/L treatment also had a significantly higher incidence of abnormalities than all other treatments.
Uptake and depuration of cadmium, nickel, and lead in laboratory-exposed Tubifex tubifex and corresponding changes in the concentration of a metallothionein-like protein
Authors: Gillis Patricia L. , Dixon D. George , Borgmann Uwe , Reynoldson Trefor B. 
Published: March 2005

Abstract
Based on weight loss in water, 2 4h is recommended for Tubifex tubifex gut clearance. Biota-to-sediment accumulation factors (BSAFs) in gut-cleared T. tubifex following six weeks of exposure to Cd-, Ni-, and Pb-spiked sediment were 12.4, 3.0, and 19.0, respectively. Tissue Ni concentrations peaked after 12 h, whereas Cd and Pb were accumulated for the duration of the exposure. Tubifex tubifex were transferred to either water (24 h) or sediment (10 weeks) to monitor changes in internal metal concentrations. After 24 h in water, only Ni concentration had declined significantly (p &lt; 0.05), suggesting that the majority of Ni was associated with the gut content, while Cd and Pb were accumulated in the tissues. Metal depuration in sediment was described with two-compartment, first-order kinetic models (r2 = 0.7–0.8; p &lt; 0.001), indicating that T. tubifex has both a quickly depurated and a more tightly bound pool of accumulated metal. Tubifex tubifex were also exposed to sediment spiked with just Cd (3.66 μmol/g). Cadmium uptake and induction of metallothionein-like protein (MTLP) were rapid; both parameters were significantly elevated within 24 h of exposure. Metallothionein-like protein (8.7 ± 1.8 nmol/g) and Cd (60.8 ± 11.0 μmol/g) reached maximum concentrations after 96 h and four weeks, respectively.
Combination of microautoradiography and fluorescence in situ hybridization for identification of microorganisms degrading xenobiotic contaminants
Authors: Yang Yanru , Zarda Annatina , Zeyer Josef 
Published: March 2005

Abstract
One of the central topics in environmental bioremediation research is to identify microorganisms that are capable of degrading the contaminants of interest. Here we report application of combined microautoradiography (MAR) and fluorescence in situ hybridization (FISH). The method has previously been used in a number of systems; however, here we demonstrate its feasibility in studying the degradation of xenobiotic compounds. With a model system (coculture of Pseudomonas putida B2 and Sphingomonas stygia incubated with [14C] o-nitrophenol), combination of MAR and FISH was shown to be able to successfully identify the microorganisms degrading o-nitrophenol. Compared with the conventional techniques, MAR-FISH allows fast and accurate identification of the microorganisms involved in environmental contaminant degradation.
Toward detoxifying mercury-polluted aquatic sediments with rice genetically engineered for mercury resistance
Authors: Heaton Andrew C. P. , Rugh Clayton L. , Kim Tehryung , Wang Nianjie J. , Meagher Richard B. 
Published: March 2005

Abstract
Mercury contamination of soil and water is a serious problem at many sites in the United States and throughout the world. Plant species expressing the bacterial mercuric reductase gene, merA, convert ionic mercury, Hg(II), from growth substrates to the less toxic metallic mercury, Hg(0). This activity confers mercury resistance to plants and removes mercury from the plant and substrates through volatilization. Our goal is to develop plants that intercept and remove Hg(II) from polluted aquatic systems before it can undergo bacterially mediated methylation to the neurotoxic methylmercury. Therefore, the merA gene under the control of a monocot promoter was introduced into Oryza sativa L. (rice) by particle gun bombardment. This is the first monocot and first wetland-adapted species to express the gene. The merA-expressing rice germinated and grew on semisolid growth medium spiked with sufficient Hg(II) to kill the nonengineered (wild-type) controls. To confirm that the resistance mechanism was the conversion of Hg(II) to Hg(0), seedlings of merA-expressing O. sativa were grown in Hg(II)-spiked liquid medium or water-saturated soil media and were shown to volatilize significantly more Hg(0) than wild-type counterparts. Further genetic manipulation could yield plants with increased efficiency to extract soil Hg(II) and volatilize it as Hg(0) or with the novel ability to directly convert methylmercury to Hg(0).
Speciation of heavy metals in recent sediments of three coastal ecosystems in the Gulf of Cadiz, Southwest Iberian Peninsula
Authors: Sáenz Veronica , Blasco Julián , Gómez-Parra Abelardo 
Published: March 2005

Abstract
A five-step sequential extraction technique was used to determine the partitioning of Cr, Mn, Fe, Cu, Zn, Cd, and Pb among the operative sedimentary phases (exchangeable ions, carbonates, manganese and iron oxides, sulfides and organic matter, and residual minerals) in coastal sediment from three locations in the southwest Iberian Peninsula. Two sites are located close to industrial areas, the salt marshes of the Odiel River and Bay of Cádiz, and one in a nonindustrial area, the Barbate River salt marshes. The Odiel River salt marshes also receive the drainage from mining activities in the Huelva region. In the sediments from the Bay of Cádiz and Barbate River salt marshes, Cr, Cu, Fe, and Zn were extracted from the residual fraction at percentages higher than 60%. In the sediments from the Odiel River salt marshes, concentrations of all the metals, except Cu, zn, and cd, exceeded 60% in the residual fraction as well. In the sediments from the Bay of Cádiz and Barbate River salt marshes, the main bioavailable metals were Mn and Cd; in those from the Odiel River salt marshes, the main bioavailable metals were Zn and Cd, respectively. The environmental risk was determined by employing the environmental risk factor (ERF), defined as ERF = (CSQV — Ci/CSQV), where Ci is the heavy metal concentration in the first four fractions and CSQV is concentration sediment quality value (the highest concentration with no associated biological effect). Our results showed that the sediments from the Cádiz Bay and Barbate River salt marshes do not constitute any environmental risk under the current natural conditions. In contrast, in the Odiel River salt marshes, Cu, Zn, and Pb yielded ERFs of less than zero at several sampling stations and, consequently, pose a potential threat for the organisms in the area. This is a consequence of the high levels of metals in the area derived from the mining activity (pyrite) and industrial activities and the association of these heavy metals with more labile fractions of the sediments.
Predicting toxic equivalence factors from 13C nuclear magnetic resonance spectra for dioxins, furans, and polychlorinated biphenyls using linear and nonlinear pattern recognition methods
Authors: Buzatu Dan A. , Beger Richard D. , Wilkes Jon G. , Lay Jackson O. 
Published: March 2005

Abstract
Two quantitative spectrometric data-activity relationships (QSDAR) models have been developed relating 29 dioxin or dioxin-like molecules to their toxic equivalence factors (TEFs). These models were based on patterns in simulated 13C nuclear magnetic resonance (NMR) data with the patterns defined by comparative spectral analysis (CoSA). Two versions of CoSA multiple linear regression (MLR) models using 7 or 10 spectral bins had, respectively, explained variances (r2) of 0.88 and 0.95, and leave-one-out (LOO) cross-validated variances (q2) of 0.78 and 0.88. A third, artificial neural network model—using a feed forward, back propagating, three-layer neural network—produced an r2 of 0.99, a LOO q2 of 0.82, and a leave-three-out q2 of 0.81. A postulated reason that the results of these QSDAR models are better than traditional quantitative structure-activity relationship (QSAR) models is based on the difference in descriptors rather than on any differences in pattern recognition approach. Results suggest that the 13C NMR spectral data contain molecular quantum mechanical information more reflective of each molecule's biochemical properties than do the calculated electrostatic potentials and molecular alignment assumptions used in developing QSAR models. The QSDAR models provide a rapid, simple way to model the toxicity of dioxin and dioxin-like compounds.
Alterations to gonadal development and reproductive success in japanese medaka (Oryzias latipes) exposed to 17α-ethinylestradiol
Authors: Balch Gordon C. , Mackenzie Constanze A. , Metcalfe Chris D. 
Published: March 2005

Abstract
The Japanese medaka (Oryzias latipes) was used as an in vivo model to evaluate the effects of exposure to the synthetic estrogen 17α-ethinylestradiol (EE2) on reproductive behavior and reproductive success in fish. Exposures to EE2 began within 2 to 5 d posthatch and continued until medaka were sexually mature, between four and six months of age. Among male and female medaka exposed to EE2 at nominal concentrations of 0.2 and 2 ng/L, mating behavior and reproductive success were normal in reproductive trials. However, reproductive behavior (i.e., copulations) was suppressed in the treatment with 10 ng/L EE2. Among 19 males exposed to 10 ng/L EE2 and placed with unexposed females in reproductive trials, 16 males did not copulate and reproductive success was very low. None of the females exposed to 10 ng/L of EE2 participated in reproductive behavior with unexposed males. The reproductive trials in combination with a histological survey indicated that male fish with gonadal intersex (i.e., testis-ova) were still capable of reproductive behavior and could fertilize eggs. Even though females exposed to 10 ng/L EE2 had poor reproductive success, their ovaries showed normal development and oogenesis. These data are relevant to observations of intersex in feral fish populations. Although intersex in male fish may be an indicator of exposure to estrogenic compounds, it appears that the presence of oocytes in testicular tissue may not directly impact the reproductive capability of the male fish. However, it is clear that concentrations of endocrine disrupting chemicals (EDCs) that cause gonadal intersex are sufficient to reduce reproductive performance.
Investigating the role of desorption on the bioavailability of sediment-associated 3,4,3′,4′-tetrachlorobiphenyl in benthic invertebrates
Authors: Leppänen Matti T. , Landrum Peter F. , Kukkonen Jussi V. K. , Greenberg Marc S. , Burton G. Allen , Robinson Sander D. , Gossiaux Duane C. 
Published: March 2005

Abstract
Only a fraction of all sediment-associated hydrophobic organic contaminants are bioavailable, and a simple Tenax® extraction procedure may estimate this fraction. Bioavailability is assumed to coincide with the rapidly and, possibly, slowly desorbing sediment-associated contaminant. River sediment was spiked with radiolabeled (14C) and nonradiolabeled (12C) 3,4,3,4′-tetrachlorobiphenyl (TCBP), and desorption kinetics using Tenax extraction were obtained at 10°C and 22°C. Bioaccumulation was measured in Lumbriculus variegatus, Chironomus tentans, and Hyalella azteca. Desorption of TCBP was triphasic at 22°C and slowed at 10°C to show only biphasic kinetics. The rapidly desorbing fractions decreased with increasing TCBP sediment concentration. The biota sediment accumulation factors, biota accumulation factors, and sediment clearance coefficients (ks) also decreased with increasing sediment TCBP concentration. The rapidly plus slowly desorbing fractions and the total TCBP desorbed when 99.9% of the rapidly desorbing fraction had desorbed were used to estimate bioavailable TCBP. These Tenax-based fractions did not explain the decreasing bioavailability with increasing TCBP load. Several factors, such as animal behavior and TCBP water solubility limitations, were evaluated to explain the concentration effect, but the most likely cause was severe diffusion limitations in whole sediment that were not predicted by the fully mixed Tenax extraction. Therefore, desorbing fractions determined by Tenax extraction overestimated the bioavailable fractions in sediments.
Effects of sublethal fenitrothion ingestion on cholinesterase inhibition, standard metabolism, thermal preference, and prey-capture ability in the Australian central bearded dragon (Pogona vitticeps, agamidae)
Authors: Bain David , Buttemer William A. , Astheimer Lee , Fildes Karen , Hooper Michael J. 
Published: March 2005

Abstract
The central bearded dragon (Pogona vitticeps) is a medium-sized lizard that is common in semiarid habitats in Australia and that potentially is at risk of fenitrothion exposure from use of the chemical in plague locust control. We examined the effects of single sublethal doses of this organophosphate (OP; low dose = 2.0 mg/kg; high dose = 20 mg/kg; control = vehicle alone) on lizard thermal preference, standard metabolic rate, and prey-capture ability. We also measured activities of plasma total cholinesterase (ChE) and acetylcholinesterase before and at 0, 2, 8, 24, 120, and 504 h after OP dosing. Predose plasma total ChE activity differed significantly between sexes and averaged 0.66 ± 0.06 and 0.45 ± 0.06 μmol/min/ml for males and females, respectively. Approximately 75% of total ChE activity was attributable to butyrylcholinesterase. Peak ChE inhibition reached 19% 2 h after OP ingestion in the low-dose group, and 68% 8 h after ingestion in high-dose animals. Neither OP doses significantly affected diurnal body temperature, standard metabolic rate, or feeding rate. Plasma total ChE levels remained substantially depressed up to 21 d after dosing in the high-dose group, making this species a useful long-term biomonitor of OP exposure in its habitat.
Statistical analysis of honeybee survival after chronic exposure to insecticides
Authors: Moncharmont François-Xavier Dechaume , Decourtye Axel , Hennequet-Hantier Christelle , Pons Odile , Pham-Delègue Minh-Hà 
Published: March 2005

Abstract
Studies concerning long-term survival of honeybees raise the problem of the statistical analysis of mortality data. In the present study, we used a modeling approach of survival data of caged bees under chronic exposure to two pesticides (imidacloprid and deltamethrin). Our model, based on a Cox proportional hazard model, is not restricted to a specific hazard functional form, such as in parametric approaches, but takes into account multiple covariates. We consider not only the pesticide treatment but also a nuisance variable (variability between replicates). Moreover, considering the occurrence of social interactions, the model integrates the fact that bees do not die independently of each other. We demonstrate the chronic toxicity induced by imidacloprid and deltamethrin. Our results also underline the role of the replicate effect, the density-dependent effect, and their interactions with the treatment effect. None of these parameters can be neglected in the assessment of chronic toxicity of pesticides to the honeybee.