bluuebunny/crossref_metadata_2025_split huggingface dataset:
Pedological factors as drivers of archaeal and fungal communities in maize rhizosphere: a shotgun metagenomic sequencing approach
Authors: Akinola Saheed Adekunle , Ayangbenro Ayansina Segun , Babalola Olubukola Oluranti 
Published: November 2023

AbstractSouth Africa is a semi-arid country in need of soil conservation methods for sustainable agroecosystem practices. Over time, researchers have worked extensively on the plant growth beneficial effects of fungi. However, archaeal groups in the soil and rhizosphere of different plants are under-studied. The impact of soil edaphic factors on the community structure of archaeal and fungal groups in the maize rhizosphere is the focus of this research. This will confirm the hypothesis that environmental factors have a significant impact on the plant–soil rhizobiome. To achieve this objective, a shotgun metagenomics approach was used to analyze maize rhizosphere and bulk soils collected from North West and Gauteng provinces of South Africa. Our findings revealed that both the maize rhizosphere and bulk soils have several archaeal and fungal phyla in common. Besides, Ascomycota (30‒51%), Thaumarchaeota (14‒26%), Euryarchaeota (19‒29%), and Crenarchaeota (8‒12%) have significantly dominated the maize rhizosphere and surrounding bulk soils. In comparison, genera such as Nitrosopumilus (Ls-18.32%, Lc-16.25%; Rs-15.45%, Rc-11.47%), Candidatus Nitrososphaera (Ls-15.29%, Lc-13.37%; Rs-10.53%, Rc-8.29%), Cenarchaeum (Ls-8.84%, Lc-8.16%; Rs-7.63%, Rc-5.38%), Chaetomium (Ls-25.15%, Lc-23.05%; Rs-14.83%, Rc-6.29%), and Neurospora (Ls-2.09%, Lc-1.95%; Rs-1.05%, Rc-0.99%) were significantly higher in maize rhizosphere soils compared to bulk soils (p < 0.05). Diversity indices showed that the archaeal and fungal composition were significantly different across samples with the presence of unclassified groups that could indicate the possibility of novel organisms in the sampling areas. The forward selection of soil edaphic factors predicted N–NH4, pH, and organic matter as the major contributing factors to the variation in the fungal and archaeal communities. To fully exploit the advantages possessed by these species, it is necessary to better understand the main environmental factors driving microbial assemblages of the soil microbiome. In addition, mapping out a culture-based method to unveil the unclassified groups could assist in the discovery of biotechnologically important archaeal and fungal groups for sustainable plant growth.
Cracking the code: mapping residential building energy performance in rural Central Asia through building typologies
Authors: Mehta Kedar , Zörner Wilfried 
Published: November 2023

AbstractBuildings in rural Central Asia have unique characteristics as they were built during the Soviet era (during 1950–1960) without any energy efficiency measures. The special and aged building stock pose a crucial challenge on energy security and energy supply. However, accurate scientific data on their energy usage is lacking, highlighting a research gap about robust and validated methodology to determine the energy use of rural Central Asian buildings. In response to this need, this research paper proposes a set of generalised residential building typologies for rural Central Asia, with a focus on Kyrgyzstan. The study combines quantitative and qualitative methods, including household surveys, energy demand modelling, EnergyPlus simulations, and result validation. It derives energy-based building typologies from construction year and building envelope characteristics. Through numerous validated simulations, it was identified that the heat demand for rural Kyrgyz houses is 3–5 times here compared to European houses (250–400 kWh/m2). The study revealed the estimated heat demand for homes in rural Kyrgyzstan, indicating a significant potential for improving building energy efficiency in the region. These results can inform specific approaches, such as building renovation plans, energy certification, and renovation strategies. Furthermore, the validated methodology introduced offers opportunities for researchers in the field of building energy efficiency and can be applied to similar regions in Central Asia with comparable building stocks and climates.
Intraindividual Fluctuation in Optimism Under Daily Life Circumstances: A Longitudinal Study
Authors: Shimomura Kanji , Morita Kenji , Nishiguchi Yuki , Huffman Jeff C. , Millstein Rachel A. 
Published: November 2023

AbstractOptimism is typically conceptualized as a relatively static tendency regarding positive expectations about one’s future. However, recent studies suggest that optimism may meaningfully fluctuate within individuals over time. To date, little is known about the characteristics of such state optimism and potential cultural difference in state optimism. Accordingly, we developed a Japanese version of the State Optimism Measure (J-SOM) and examined its validity and the nature of intraindividual state optimism fluctuations; we also examined relationships between the J-SOM and other measures of mental health, including trait optimism. We conducted two online longitudinal surveys with different time intervals (weekly, n = 97; monthly, n = 99) targeting university students. Results were largely consistent between the two surveys. We confirmed high factor validity and internal consistency of the J-SOM. The J-SOM showed significant correlations in expected directions with other measures such as depressive mood and subjective happiness. In addition, intraindividual changes in the J-SOM were associated with changes in mood and quality of daily life. Importantly, these associations between intraindividual change in optimism and in other variables were minimal for trait optimism. We also found that state optimism, compared with trait optimism, tended to show larger intraindividual changes over 1, 2, 3, 4, and 8 weeks. In summary, this study developed a translated version of the SOM and validated it, and then showed, for the first time, that state optimism can fluctuate within individuals in daily life over a span of several weeks.
Emerging posttranslational modifications and their roles in DNA damage response
Authors: Wu Zhen , Liu Yajing , Zhang Meng , Wang Donglai 
Published: November 2023

AbstractPosttranslational modifications (PTMs), occurring on various histones and nonhistone proteins, greatly enrich the diversity of the proteome, thereby profoundly affecting protein structures and biological functions. Histones are particularly important components of genomic chromatin and their modifications represent a critical event in the control of DNA damage response (DDR) induced by endogenous or exogenous insults. Extensive studies have revealed the roles of classical PTMs including phosphorylation, acetylation and ubiquitination, in modulating chromatin dynamics through the recruitment of chromatin remodeling complex and repair machinery during DDR process, thus successfully maintaining genome stability and preventing the cells from adverse fates such as apoptosis or malignant transformation. In recent years, several novel PTMs, such as ufmylation, crotonylation, succinylation and lactylation, have been discovered on both histones and nonhistone proteins. Their potential roles and regulatory mechanisms during DDR process have indeed emerged, but are still far from completely understood. This review primarily focuses on the regulation of novel PTMs in DDR, and further discusses the repair networks of cell in response to DNA damage and the interplay between diverse modifications in DNA damage response, which aims to expand the understanding of PTMs involved in DDR regulation and provides potential insights into disease intervention.
On reading and interpreting black box deep neural networks
Authors: Dobson James E. 
Published: November 2023

AbstractThe deep neural networks used in computer vision and in recent large language models are widely recognized as black boxes, a term that describes their complicated architectures and opaque decision-making mechanisms. This essay outlines several different strategies through which humanist researchers and critics of machine learning might better understand and interpret the class of deep learning methods known as Transformers. These strategies expose different aspects of what might be “learned” as Transformers are trained and used in the analysis of language and can help critics at least partially open the black box of machine learning. They are also especially useful for digital humanists using these models as part of a research program informed by tool criticism in which the use of computational tools is conceived of as a metainterpretive act.
COMMONSIM: Simulating the utopia of COMMONISM
Authors: Gerdes Lena , Aigner Ernest , Meretz Stefan , Pahl Hanno , Schlemm Annette , Scholz-Wäckerle Manuel , Schröter Jens , Sutterlütti Simon 
Published: November 2023

AbstractThis research article presents an agent-based simulation hereinafter called COMMONSIM. It builds on COMMONISM, i.e. a large-scale commons-based vision for a utopian society. In this society, production and distribution of means are not coordinated via markets, exchange and money, or a central polity, but via bottom-up signalling and polycentric networks, i.e. ex ante coordination via needs. Heterogeneous agents care for each other in life groups and produce in different groups care, environmental as well as intermediate and final means to satisfy sensual-vital needs. Productive needs decide on the magnitude of activity in groups for a common interest, e.g. the production of means in a multi-sectoral artificial economy. Agents share cultural traits identified by different behaviours: a propensity for egoism, leisure, environmentalism and productivity. The narrative of this utopian society follows principles of critical psychology and sociology, complexity and evolution, the theory of commons and critical political economy. The article presents the utopia and an agent-based study of it, with emphasis on culture-dependent allocation mechanisms and their social and economic implications for agents and groups.
Body Fat Distribution, Fat-Free Mass and Cardiovascular Function in the UK Biobank
Authors: Oguntade Ayodipupo S. , Lacey Ben , Taylor Hannah , Lewington Sarah 
Published: November 2023

Abstract
Background
We evaluated the independent associations of body composition measures on left ventricular ejection fraction (LVEF) and pulse wave arterial stiffness index (PWASI).

Methods
The present analysis included 23,258 individuals (mean age 63 years, 53% women) who participated in the whole body imaging sub-study of the UK Biobank. Associations of body composition measures with each of LVEF and PWASI, after mutual adjustment for one another and potential confounders, were determined using multivariable linear regression.

Results
Among regional body fat measures, higher visceral fat (VAT) was associated with lower LVEF (β = − 0.45; 95% CI − 0.60, − 0.31 per SD) and higher PWASI (β = 0.51; 95% CI 0.38–0.65 per SD). The association between VAT and LVEF was negatively linear but positively linear for PWASI throughout the range of VAT measured. Other regional fat measures and fat-free mass were not significantly associated with either LVEF or PWASI. Central adiposity measures (waist circumference [WC] and waist–hip ratio [WHR]) showed significant inverse association with LVEF (WC: β = − 0.11; 95% CI − 0.21, − 0.01 per SD; WHR β = − 0.25; 95% CI − 0.38, − 0.12 per SD) but positive association with PWASI (WC: β = 0.37; 95% CI 0.28–0.47 per SD; WHR β = 0.39; 95% CI 0.27 − 0.51 per SD) while BMI was not significantly associated with LVEF (β = 0.05; 95% CI − 0.04, 0.14 per SD) but showed weaker positive association with PWASI (β = 0.27; 95% CI 0.18–0.35 per SD).

Conclusions
Excess visceral fat and central adiposity are associated with impaired LV function and increased arterial stiffness which may predispose to heart failure.
Improving compliance with COVID-19 guidance: a workplace field experiment
Authors: Arroyos-Calvera Danae , Drouvelis Michalis , Lohse Johannes , McDonald Rebecca 
Published: November 2023

Abstract
Compliance with hygiene and other safety measures in the workplace was an important component of society's strategy for reducing infections at the onset of the COVID-19 pandemic, in particular before vaccinations were widely available. We report the results of a field trial of well-established behavioural interventions (social norms, pledging and messenger effects) we implemented to improve compliance with such measures in an occupational setting. We use daily reports of own and other's behaviour to assess the effects of these interventions and supplement these subjective (self-reported) measures with objective data on hand sanitiser usage. The behavioural interventions tested have statistically significant but quantitatively moderate effects on subjective compliance measures and minimal effects on hand sanitiser usage. All effects of our interventions are short-term in nature and dissipate shortly after implementation. Our findings thus provide at most weak support for the notion that typical behavioural interventions can help support compliance with infection prevention measures in the workplace.
Voter Preferences for EU Asylum Policies: The Role of Government Cues
Authors: Kriesi Hanspeter , Vrânceanu Alina 
Published: November 2023

AbstractWe study whether and how governments influence public opinion about immigration policies in Europe. At the European level, conflicts about policy are generally territorial in nature – that is, they involve conflicts between member states, which are represented by their governments. Distinguishing between four types of situations, depending on whether the national governments support or oppose EU policy proposals, we formulate and test hypotheses concerning the positions of incumbent and opposition voters/non-voters on four different asylum-policy proposals in 16 European countries. We test both direct effects of incumbent cues on voters' preferences, and moderating effects, where the cueing affects the way in which individual attitudes to immigration and European integration translate into specific preferences for EU asylum and immigration policies. Our results suggest that voters, indeed, follow the cues provided by their governments when forming their preferences on EU policies.
Modelling the replacement of red and processed meat with plant-based alternatives and the estimated effect on insulin sensitivity in a cohort of Australian adults
Authors: Goode James P. , Smith Kylie J. , Breslin Monique , Kilpatrick Michelle , Dwyer Terence , Venn Alison J. , Magnussen Costan G. 
Published: November 2023

AbstractDietary guidelines are increasingly promoting mostly plant-based diets, limits on red meat consumption, and plant-based sources of protein for health and environmental reasons. It is unclear how the resulting food substitutions associate with insulin resistance, a risk factor for type 2 diabetes. We modelled the replacement of red and processed meat with plant-based alternatives and the estimated effect on insulin sensitivity. We included 783 participants (55 % female) from the Childhood Determinants of Adult Health study, a population-based cohort of Australians. In adulthood, diet was assessed at three time points using FFQ: 2004–2006, 2009–2011 and 2017–2019. We calculated the average daily intake of each food group in standard serves. Insulin sensitivity was estimated from fasting glucose and insulin concentrations in 2017–2019 (aged 39–49 years) using homoeostasis model assessment. Replacing red meat with a combination of plant-based alternatives was associated with higher insulin sensitivity (β = 10·5 percentage points, 95 % CI (4·1, 17·4)). Adjustment for waist circumference attenuated this association by 61·7 %. Replacing red meat with either legumes, nuts/seeds or wholegrains was likewise associated with higher insulin sensitivity. Point estimates were similar but less precise when replacing processed meat with plant-based alternatives. Our modelling suggests that regularly replacing red meat, and possibly processed meat, with plant-based alternatives may associate with higher insulin sensitivity. Further, abdominal adiposity may be an important mediator in this relationship. Our findings support advice to prioritise plant-based sources of protein at the expense of red meat consumption.
On sin-based responses to divine hiddenness
Authors: Baker-Hytch Max 
Published: November 2023

Abstract
While sin-based responses to divine hiddenness arguments are a road less travelled, they do nonetheless have a number of defenders in the contemporary divine hiddenness literature. I begin this article by exploring the various strategies that have been employed to attempt to motivate such accounts. What none of these strategies seem to take into account, however, is a cluster of facts about the correlation (or lack thereof) between a person's propositional attitudes about God and the degree to which that person displays the relevant moral and intellectual virtues. This article aims to fill this lacuna by mapping out the options available to defenders of sin-based responses in trying to cope with this cluster of facts. I argue that there may be resources available for preserving some aspects of the sin-based approach, but that taking stock of the aforementioned facts will ultimately require the positing of causal factors besides sin in order to generate a sufficient explanation of the phenomenon of non-belief.
Spread-out limit of the critical points for lattice trees and lattice animals in dimensions
Authors: Kawamoto Noe , Sakai Akira 
Published: November 2023

AbstractA spread-out lattice animal is a finite connected set of edges in $\{\{x,y\}\subset \mathbb{Z}^d\;:\;0\lt \|x-y\|\le L\}$. A lattice tree is a lattice animal with no loops. The best estimate on the critical point $p_{\textrm{c}}$ so far was achieved by Penrose (J. Stat. Phys. 77, 3–15, 1994) : $p_{\textrm{c}}=1/e+O(L^{-2d/7}\log L)$ for both models for all $d\ge 1$. In this paper, we show that $p_{\textrm{c}}=1/e+CL^{-d}+O(L^{-d-1})$ for all $d\gt 8$, where the model-dependent constant $C$ has the random-walk representation
\begin{align*} C_{\textrm{LT}}=\sum _{n=2}^\infty \frac{n+1}{2e}U^{*n}(o),&& C_{\textrm{LA}}=C_{\textrm{LT}}-\frac 1{2e^2}\sum _{n=3}^\infty U^{*n}(o), \end{align*}where $U^{*n}$ is the $n$-fold convolution of the uniform distribution on the $d$-dimensional ball $\{x\in{\mathbb R}^d\;: \|x\|\le 1\}$. The proof is based on a novel use of the lace expansion for the 2-point function and detailed analysis of the 1-point function at a certain value of $p$ that is designed to make the analysis extremely simple.
From flesh to paper: bodily and material transformation in seventeenth-century Copenhagen – a case-study
Authors: Hansen Peter W. , Jakobsen Jesper , Langen Ulrik , Simonsen Rikke 
Published: November 2023

AbstractThis article investigates the transformation of the body of a female child murderer as she passed through specific spatial configurations in the urban setting of the seventeenth-century capital of Denmark–Norway. By using the case of Gertrud Nielsdatter, we explore the significance of public urban spaces in the bodily and material transformation of a woman from a condemned sinner to an object of scientific wonder. This transformation was facilitated by practices in diverse public spaces – controlled or influenced by government, city, church, as well as academic authorities and stakeholders – such as the city court, the place of execution, the university and, not least, the book shops across Europe selling books containing the print representing internal organs of Gertrud Nielsdatter. The case demonstrates how the physical body of an ordinary – yet outlawed – Copenhagener was repeatedly transformed in interaction with public spaces and the material culture of buildings, fixtures and fittings.
Extubation in operating room versus early extubation in ICU after open-heart surgery in patients with CHDs
Authors: Kim Chan Hyeong , Lee Jae Hong , Kwon Hye Won , Cho Sungkyu , Kim Woong-Han , Ji Sang-Hwan , Jang Young-Eun , Kim Jin-Tae , Kwak Jae Gun 
Published: November 2023

AbstractBackgrounds and Objectives:The “Fast track” protocol is an early extubation strategy to reduce ventilator-associated complications and induce early recovery after open-heart surgery. This study compared clinical outcomes between operating room extubation and ICU extubation after open-heart surgery in patients with CHD.Methods:We retrospectively reviewed 215 patients who underwent open-heart surgery for CHDs under the scheduled “Fast track” protocol between September 2016 and April 2022. The clinical endpoints were post-operative complications, including bleeding, respiratory and neurological complications, and hospital/ICU stays.Results:The patients were divided into operating room extubation (group O, n = 124) and ICU extubation (group I, n=91) groups. The most frequently performed procedures were patch closures of the atrial septal (107/215, 49.8%) and ventricular septal (89/215, 41.4%) defects. There were no significant differences in major post-operative complications or ICU and hospital stay duration between the two groups; however, patients in group I showed longer mechanical ventilatory support (0.0 min vs. 59.0 min (interquartile range: 17.0–169.0), p < 0.001). Patients in Group O showed higher initial lactate levels (3.2 ± 1.7 mg/dL versus 2.5 ± 2.0 mg/dL, p = 0.007) and more frequently used additional sedatives and opioid analgesics (33.1% versus 19.8%, p = 0.031).Conclusions:Extubation in the operating room was not beneficial for patients during post-operative ICU or hospital stay. Early extubation in the ICU resulted in more stable hemodynamics in the immediate post-operative period and required less use of sedatives and analgesics.
Single-molecule tracking of myelin basic protein during oligodendrocyte differentiation
Authors: Rassul Sayed M. , Otsu Masahiro , Styles Iain B. , Neely Robert K. , Fulton Daniel 
Published: November 2023

Abstract
This study aimed to expand our understanding of myelin basic protein (MBP), a key component of central nervous system myelin, by developing a protocol to track and quantifying individual MBP particles during oligodendrocyte (OL) differentiation. MBP particle directionality, confinement, and diffusion were tracked by rapid TIRF and HILO imaging of Dendra2 tagged MBP in three stages of mouse oligodendroglia: OL precursors, early myelinating OLs, and mature myelinating OLs. The directionality and confinement of MBP particles increased at each stage consistent with progressive transport toward, and recruitment into, emerging myelin structures. Unexpectedly, diffusion data presented a more complex pattern with subpopulations of the most diffusive particles disappearing at the transition between the precursor and early myelinating stage, before reemerging in the membrane sheets of mature OLs. This diversity of particle behaviors, which would be undetectable by conventional ensemble-averaged methods, are consistent with a multifunctional view of MBP involving roles in myelin expansion and compaction.
Alloying metal cations in perovskite nanocrystals is a new route to controlling hot carrier cooling
Authors: Mondal Navendu , Carwithen Ben P. , Bakulin Artem A. 
Published: November 2023

AbstractHot carrier cooling is slowed down upon alloying tin in lead-halide perovskite nanocrystals through the engineering of carrier-phonon and carrier-defect interactions.