bluuebunny/crossref_metadata_2025_split huggingface dataset:
Distribution of intestinal parasitoses in relation to environmental and sociocultural parameters in La Plata, Argentina
Authors: Gamboa M.I. , Basualdo J.A. , Córdoba M.A. , Pezzani B.C. , Minvielle M.C. , Lahitte H.B. 
Published: April 2003

AbstractEnvironmental parameters influencing the distribution of parasite species in three neighbourhoods of differing socioeconomic conditions in La Plata, Argentina were analysed. Coproparasitological screenings were performed in children up to 14 years old from a marginal zone (100), a suburban neighbourhood (101), and an urban area (91) in 1999--2000. The presence of parasite species in environmental samples (water and soil) and the degree of association among parasite communities was documented and evaluated. The prevalence of infection in each population was 73.0%, 54.4% and 35.2%, respectively. The frequencies of helminths and pathogenic protozoa were both higher in the marginal zone, where sanitary and environmental conditions were significantly inferior compared with the other zones. The high prevalence of intestinal parasites in this infantile population was related to parasitic contamination of the soil and water sources in addition to deficient sanitary and sociocultural conditions. Calculation of an equitability index revealed that the specific richness was less equitable once socioeconomic conditions and hygienic practices were improved. This study demonstrates the need to implement management practices for the control of intestinal parasitoses in accordance with the environmental and sociocultural characteristics of a given ecosystem.
Involvement of cysteine proteinases in excystment ofParagonimus ohiraimetacercariae induced by sodium cholate and A23187
Authors: Ikeda T. 
Published: April 2003

AbstractThe involvement of intrinsic proteinases in the excystment ofParagonimus ohiraimetacercariae was studied inin vitroexcystment induced by sodium (Na) cholate, a bile salt and A23187, a Ca2+ionophore. The effects of various proteinase inhibitors on thein vitroexcystment were examined and similar inhibitory profiles were obtained. Benzyloxycarbonyl-L-leucyl-L-leucinal (Z-Leu-Leu-H), a cysteine proteinase inhibitor and 4-(2-aminoethyl)-benzenesulfonyl fluoride (Pefabloc SC), a serine proteinase inhibitor completely inhibited excystment, while L-3-carboxy-2,3-trans-epoxypropionyl-leucylamido (4-guanidino)-butane (E-64), a cysteine proteinase inhibitor and leupeptin, a cysteine/serine proteinase inhibitor permitted partial excystment at a lower rate, but inhibited it from proceeding from the partial excystment stage. In secretions released from metacercariae during excystment, proteinase activities detected towards various fluorogenic peptidyl substrates were almost completely inhibited by Z-Leu-Leu-H and E-64, but not by Pefabloc SC. Sodium cholate induced a higher secretion of cysteine proteinases and a higher rate of excystment than A23187. Profiles of cysteine proteinase activities towards five peptidyl substrates detected were markedly different among the two secretions and the lysate of newly excysted juveniles. Newly excysted juveniles released cysteine proteinases with similar activity profiles and levels to metacercariae induced by Na cholate-incubation, whereas the release of cysteine proteinases was reduced compared with metacercariae induced by A23187-incubation. These results provide valuable information about the involvement of intrinsic proteinases in metacercarial excystment.
Fasciola gigantica: larval productivity of three different miracidial isolates in the snail Lymnaea truncatula
Authors: Dar Y. , Vignoles P. , Rondelaud D. , Dreyfuss G. 
Published: April 2003

AbstractBimiracidial infections of Lymnaea truncatula with three isolates of Fasciola gigantica, originating from China, Egypt and Madagascar, were carried out to determine the effect of geographic origin of the parasite on the larval productivity of redial generations. The prevalences of experimental infections in snails exposed to strains from Madagascar, China and Egypt were 20.8%, 60.0% and 80.0%, respectively. At day 49 post-exposure (p.e.), the total number of free rediae in snails infected with the Egyptian isolate was significantly higher than that recorded in the Madagascan group. On the other hand, at day 49 p.e., the majority of cercariae in the Chinese and Egyptian groups were produced by R2a rediae (70.6% and 66.6% of cercariae produced by all live rediae), while, in the Madagascan group, the cercariae were produced mainly by the first redial generation. Snails infected with the Egyptian isolate of miracidia developed more live rediae and, consequently, could produce a higher number of cercariae. As a result, L. truncatula snails were highly adapted to infections with the Egyptian and Chinese isolates of F. gigantica.
Taenia solium taeniasis/cysticercosis in Papua, Indonesia in 2001: detection of human worm carriers
Authors: Margono S.S. , Ito A. , Sato M.O. , Okamoto M. , Subahar R. , Yamasaki H. , Hamid A. , Wandra T. , Purba W.H. , Nakaya K. , Ito M. , Craig P.S. , Suroso T. 
Published: April 2003

AbstractA preliminary study to detect human worm carriers of Taenia solium in Papua (Irian Jaya), Indonesia was carried out using stool examinations for the detection of copro-antigens and adult proglottids after chemotherapy, and confirmation by mitochondrial DNA analysis using expelled proglottids and metacestodes developed in NOD/Shi-scid mice from eggs of expelled proglottids. Approximately 8.6% of the local population in Kama (5/58), 1 km from the local capital city centre, Wamena, were confirmed to harbour adult T. solium using these techniques.
A molecular phylogeographic study based on DNA sequences from individual metacercariae of Paragonimus mexicanus from Guatemala and Ecuador
Authors: Iwagami M. , Monroy C. , Rosas M.A. , Pinto M.R. , Guevara A.G. , Vieira J.C. , Agatsuma Y. , Agatsuma T. 
Published: April 2003

AbstractA molecular phylogeographic study of Paragonimus mexicanus collected from Guatemala and Ecuador was performed. Genomic DNA was extracted from individual metacercariae, and two gene regions (partial mitochondrial cytochrome c oxidase subunit 1 (CO1) and the second internal transcribed spacer of the nuclear ribosomal gene repeat (ITS2)) were amplified by the polymerase chain reaction (PCR). Sequences segregated in a phylogenetic tree according to their geographic origins. ITS2 sequences from Ecuador and Guatemala differed at only one site. Pairwise distances among CO1 sequences within a country were always lower than between countries. Nevertheless, genetic distances between countries were less than between geographical forms of P. westermani that have been suggested to be distinct species. This result suggests that populations from Guatemala and Ecuador are genetically differentiated perhaps at the level of subspecies.
Cadmium toxicity and snail–digenean interactions in a population of Lymnaea spp.
Authors: Morley N.J. , Crane M. , Lewis J.W. 
Published: April 2003

AbstractThe toxicity of cadmium to a population of Lymnaea peregra and L. stagnalis naturally infected with a range of digeneans and collected from a number of sites in the lower Thames Valley, UK was investigated. Lymnaeid snails were exposed to 100 μg l-1 cadmium and the effects on host survival and emergence of cercariae recorded. Overwintered L. peregra, but not L. stagnalis, showed significantly reduced survival compared to seasonally infected snails, i.e. snails which have acquired an infection during the spring or summer. A significant increase in survival with increasing snail size was demonstrated for L. stagnalis and for seasonally infected L. peregra only. Only L. stagnalis infected with Diplostomum spathaceum and L. peregra infected individually with D. spathaceum, Sanguinicola inermis, Echinoparyphium recurvatum and Notocotylus attenuatus demonstrated a significantly reduced survival compared to laboratory-bred controls. The exposure of L. stagnalis to cadmium resulted in a significant reduction in the emergence of D. spathaceum over a 5-day period but cadmium-exposed L. peregra showed no difference in the emergence of E. recurvatum cercariae over a 3-day exposure period. The mechanisms and importance of metal toxicity to snail–digenean interactions are discussed.
Prevalence of canine dirofilariasis in Taiwan
Authors: Wu Ching-Cheng , Fan Ping-Chin 
Published: April 2003

AbstractBetween 1993 and 1997, 837 stray dogs from North Taiwan were necropsied and examined for dog heartworm infections. A thick smear from 20 ml of peripheral blood from each dog was also prepared and examined for microfilariae (mf). The overall prevalence of adult worms in the dog population was 57%. The prevalence of mf in 1228 house dogs from different parts of Taiwan was also determined from 20 ml of peripheral blood in the same way. The overall prevalence of mf was 25%, with a value of 30% in the main island of Taiwan, this being 15 times higher than that in the offshore islands (2%). In Taiwan, the prevalence ranged from 4% in Hualien County, East Taiwan, to 41% in Nantou County, Central Taiwan. The mf prevalences on offshore islands were 1% on Liuchiu and 2% on Lanyu. The mf density per 20 ml blood in 82 house dogs was found to be 23 mf per dog, with a range of 3–97 mf per dog. A total of 477 stray dogs were found to be infected with adult worms of Dirofilaria immitis. The mean number of 7 worms per dog was obtained, with a range of 1–55 worms per dog. These results indicate that the prevalence of canine dirofilariasis has increased in Taiwan over the past 10 years. Moreover, the prevalence may be related to the wind speed, temperature, relative humidity, and altitude in the different areas surveyed.
On the longevity of Schistosoma curassoni
Authors: Vercruysse J. , Rollinson D. , van Heerden M. , Southgate V.R. 
Published: April 2003

AbstractIt is demonstrated that Schistosoma curassoni, a parasite of sheep, cattle and goats in parts of West Africa, will live for at least 8 years 5 months in a sheep. The sheep was exposed to 500 cercariae of S. curassoni liberated from infected Bulinus wrighti. The sheep died of natural causes, and at post-mortem 28 pairs of adult S. curassoni were removed from the mesenteric and rectal veins. All female worms were gravid, and eggs were hatched from faeces to produce miracidia. The development of immune responses of the host had apparently little or no effect on the viability of the eggs. Histological studies of the liver, small and large intestines revealed mild pathological symptoms. The longevity of S. curassoni is the first record of longevity of schistosomes to be based on worm counts.
In vitrometabolism of an insect neuropeptide by homogenates of the nematodeCaenorhabditis elegans
Authors: Masler E.P. 
Published: April 2003

AbstractThe cytosolic fraction of homogenates from the free-living soil nematodeCaenorhabditis elegansis capable of metabolizing the insect neuropeptide adipokinetic hormone, a decapeptide blocked at the N-terminus by a pGlu residue. Analysis of digests by RP-HPLC and LC-MS revealed that an initial endoproteolytic cleavage step produced a heptapeptide with an unblocked N-terminus that can serve as a substrate for aminopeptidases. The aminopeptidase activity is depressed in the presence of the inhibitor amastatin; the initial product of the endoproteolytic step accumulates during incubation, and expected aminopeptidase product peptides are reduced in amount, as assessed by chromatographic peak size. The absence of some expected peptide fragments in the reaction mixtures suggests that multiple proteases contribute to short peptide half-lives. Comparison of the adipokinetic hormone digestion inC. elegansto that reported previously for insects reveals the same general pattern of peptide fragment production.
Molecular cloning and expression of the full-length tropomyosin gene fromTrichinella spiralis
Authors: Nakada T. , Nagano I. , Wu Z. , Takahashi Y. 
Published: April 2003

AbstractA clone, designated as TsTM, was selected from the cDNA library of newborn larvae (NBL) ofTrichinella spiralisthrough immunoscreening against infected sera. The clone contained a cDNA transcript of 855 bp in length with a single open reading frame, which encoded 285-amino acids (33 kDa in the estimated molecular weight). A sequence analysis revealed that the clone TsTM encoded the full-length of tropomyosin gene. The phylogenetic analysis of the tropomyosin gene was in good agreement with the classical taxonomical position ofT. spiralis. The fusion proteins encoded by the clone TsTM were produced in anEscherichia coliexpression system and affinity purified, and the antibody was raised against the protein for the following studies. The antibody against the fusion protein positively bound to the hypodermal muscle layer in immunolocalization analysis, and the 35 kDa band in crude extracts of muscle larvae but not in excretory and secretory (ES) products on Western blots. The antigenicity of the clone TsTM was recognized by host mice but exhibited little species specificity.
Pseudobacciger harengulae from the Atlantic herring Clupea harengus: a new host and locality record
Authors: Rahimian H. , Thulin J. 
Published: April 2003

AbstractDuring the summer and autumn of 1994, 1995 and 1996, 406 juvenile herring caught off the Swedish west coast were examined for parasites. Amongst those found was the digenean Pseudobacciger harengulae, which represents new host and locality records for this parasite. Pseudobacciger harengulae has been reported from several species of clupeiformes, mostly from tropical and temperate regions of the Atlantic, Pacific and Indian Oceans. The morphology of P. harengulae is described and compared with earlier descriptions of P. harengulae and P. manteri. The possible relationships between P. harengulae and P. manteri are discussed and the validity of the P. manteri is questioned. Most of the specimens (75%) of P. harengulae were found in the pyloric caeca and the remainder (25%) in the intestine.
Larval stages of Brachylaima fuscatum in the terrestrial snail Limicolaria aurora from southern Nigeria
Authors: Awharitoma A.O. , Okaka C.E. , Obaze S.E. 
Published: April 2003

AbstractOf 150 specimens of the gastropod snail Limicolaria aurora examined from the Edo and Delta states of Nigeria, 63.4% were infected with larval digeneans comprising mother sporocysts (12.1%) daughter sporocysts (20.4%) cercariae (43.1%) and metacercariae (24.5%). Attempts to experimentally infect three 14-day-old chicks (Gallus domesticus) and two laboratory-bred 4-month-old mice (Mus musculus) by oral feeding and peritoneal injection with cercariae were negative, although experimental infections of chicks via a cloacal drop yielded 62 immature and 37 mature worms from the intestinal caeca and ileum. The worms were identified as Brachylaima fuscatum (Trematoda: Brachylaimidae). The study also revealed that L. aurora acts as an intermediate host for B. fuscatum, in addition to Eulota sp., Helix sp., Helicella sp., Oxychilus sp. and Agrolimax sp.
Penetration of human skin by the cercariae of Schistosoma mansoni: an investigation of the effect of multiple cercarial applications
Authors: Ingram R.J. , Bartlett A. , Brown M.B. , Marriott C. , Whitfield P.J. 
Published: April 2003

AbstractIt has previously been postulated that L-arginine emitted by penetrating Schistosoma mansoni cercariae serves as an intraspecific signal guiding other cercariae to the penetration site. It was suggested that penetrating in groups offers a selective advantage. If this hypothesis is correct and group penetration at one site on the host offers an advantage, it would follow that at such a site, successive groups of cercariae would be able to penetrate skin in either greater numbers or at a faster rate. This prediction was tested by the use of an in vitro model of cercarial penetration based on the Franz cell and using human skin. It was demonstrated that there was no increase in the percentage of cercariae able to penetrate the skin with subsequent exposures. Consequently, it seems unlikely that the release of L-arginine by cercariae during penetration could have evolved as a specific orientation system based on a selective advantage offered by group penetration.
Increased susceptibility of Atlantic salmon Salmo salar to infections with Gyrodactylus derjavini induced by dexamethasone bath treatment
Authors: Nielsen C.V. , Buchmann K. 
Published: April 2003

AbstractDexamethasone, a known immunosuppressant, was administered by bath or injection to Atlantic salmon Salmo salar (Conon stock) to study if this treatment could affect the susceptibility of fish to infections with a Danish strain of Gyrodactylus derjavini (Monogenea). Three groups of S. salar (Conon stock) were immersion treated either with 10, 60 or 240 μg dexamethasone l-1 water, respectively. In addition, one group (positive control) was treated intraperitoneally with 200 μg dexamethasone per fish and one negative control group was kept untreated. A single G. derjavini parasite was placed on the anal fin of each fish and the infection was subsequently monitored weekly for 6 weeks. An increase in parasite populations on the salmon was positively correlated with the amount of immunosuppressant used. Infection levels in the group immersion treated with dexamethasone (240 μg l-1 water) and in the i.p. treated positive control group were significantly higher compared to the untreated control group.
Setaria cervi: in vitro released collagenases and their inhibition by Wuchereria bancrofti infected sera
Authors: Singh R.N. , Rathaur S. 
Published: April 2003

AbstractIn vitro released products of adult Setaria cervi females, microfilariae and extracts showed considerable amounts of collagenase activity. On the basis of per mg protein released in vitro, the products of both microfilariae and adult females exhibited comparable activity but this was much higher than that of extract of microfilariae and adult females. Two collagenase enzymes with molecular masses of 50 kDa and 70 kDa were separated using DEAE-sepharose CL6B and Sephadex G-100 column chromatography. The 50 kDa and 70 kDa collagenase exhibited pH optima of 5.2 and 7.0, respectivly. Considering specific activity, the 50 kDa enzyme was found to contribute about ten times more collagenase activity as compared to the 70 kDa enzyme. An inhibition study revealed obvious differences between them. Thiol group inhibitors such as N-ethylmaleimide and leupeptin inhibited the 50 kDa enzyme but this was strongly activated by dithiothreitol, a thiol group stabilizer. Alternatively, the 70 kDa enzyme showed a sensitivity to a metal chelator and a serine group inhibitor indicating its metalloserine protease nature. The antifilarial drug diethylcarbamazine did not demonstrate any inhibition under in vitro conditions. Both enzymes were significantly inhibited by antibody IgG separated from Wuchereria bancrofti infected human sera, showing a possible immunoprotective role.
Java editor for biological pathways
Authors: Trost Elmar , Hackl Hubert , Maurer Michael , Trajanoski Zlatko 
Published: April 2003

Abstract
Summary: A visual Java-based tool for drawing and annotating biological pathways was developed. This tool integrates the possibilities of charting elements with different attributes (size, color, labels), drawing connections between elements in distinct characteristics (color, structure, width, arrows), as well as adding links to molecular biology databases, promoter sequences, information on the function of the genes or gene products, and references. It is easy to use and system independent. The result of the editing process is a PNG (portable network graphics) file for the images and XML (extended markup language) file for the appropriate links.
Availability: http://genome.tugraz.at
Contact: zlatko.trajanoski@tugraz.at
* To whom correspondence should be addressed.
Interpreting peptide mass spectra by VEMS
Authors: Matthiesen R. , Lundsgaard M. , Welinder K.G. , Bauw G. 
Published: April 2003

Abstract
Most existing Mass Spectra (MS) analysis programs are automatic and provide limited opportunity for editing during the interpretation. Furthermore, they rely entirely on publicly available databases for interpretation. VEMS (Virtual Expert Mass Spectrometrist) is a program for interactive analysis of peptide MS/MS spectra imported in text file format. Peaks are annotated, the monoisotopic peaks retained, and the b-and y-ion series identified in an interactive manner. The called peptide sequence is searched against a local protein database for sequence identity and peptide mass. The report compares the calculated and the experimental mass spectrum of the called peptide. The program package includes four accessory programs. VEMStrans creates protein databases in FASTA format from EST or cDNA sequence files. VEMSdata creates a virtual peptide database from FASTA files. VEMSdist displays the distribution of masses up to 5000 Da. VEMSmaldi searches singly charged peptide masses against the local database.
Availability: http://www.bio.auc.dk/~rm/sub/VEMS.htm
Contact: rm@bio.auc.dk
* To whom correspondence should be addressed.
Phylogenetic Web Profiler
Authors: Wong Philip , Kolesov Grigory , Frishman Dmitrij , Houry Walid A. 
Published: April 2003

Abstract
Summary: Phylogenetic Web Profiler (PWP) is a web-based service designed to perform phylogenetic profiling of proteins against genomes. The current version offers a selection of 63 completed genomes and available plasmids as annotated in the PEDANT genome database. Unlike currently available applications, this tool offers several choices of ortholog prediction parameters including E-value cutoff, percent length difference tolerance, and annotation similarity. Additional features include tight integration with the PEDANT database and tools to analyze properties of predicted proteins. PWP should prove very useful for the analysis of functional-linkage between proteins.
Availability: The PWP server is available at http://pedant.gsf.de/pwp/. The PWP functional predictions are also offered as part of the PEDANT genome analysis server (http://pedant.gsf.de).
Contact: walid.houry@utoronto.ca
* To whom correspondence should be addressed.
PGAGENE: integrating quantitative gene-specific results from the
NHLBI Programs for Genomic Applications
Authors: Lee Kyungjoon , Kohane Isaac S. , Butte Atul J. 
Published: April 2003

Abstract
Summary: PGAGENE is a web-based gene-specific genomic data search engine, which allows users to search over 5.9 million pieces of collective genetic and genomic data from the NHLBI supported Programs for Genomic Applications. This data includes microarray measurements, SNPs, and mutations, and data may be found using symbols, parts of gene names or products, Affymetrix probe IDs, GenBank accession numbers, UniGene IDs, dbSNP IDs, and others. The PGAGENE indexing agent periodically maps all publicly available gene-specific PGA data onto LocusLink using dynamically generated cross-referencing tables.
Availability: http://pgagene.chip.org
Contact: atul_butte@harvard.edu
* To whom correspondence should be addressed.
GAAS: Gene Array Analyzer Software for management, analysis and
visualization of gene expression data
Authors: Masseroli M. , Cerveri P. , Pelicci P.G. , Alcalay M. 
Published: April 2003

Abstract
Summary: GAAS, Gene Array Analyzer Software supports multi-user efficient management and suitable analyses of large amounts of gene expression data across replicated experiments. Its management framework handles input data generated by different technologies. A multi-user environment allows each user to store his/her own data visualization scheme, analysis parameters used, values and formats of the output data. The analysis engine performs: background and spot quality evaluation, data normalization, differential gene expression analyses in single and multiple replica experiments. Results of expression profiles can be interactively navigated through graphical interfaces and stored into output databases.
Availability: http://www.medinfopoli.polimi.it/GAAS/
Contact: masseroli@biomed.polimi.it
Supplementary information: http://www.medinfopoli.polimi.it/GAAS/
* To whom correspondence should be addressed.