bluuebunny/crossref_metadata_2025_split huggingface dataset:
Transcriptome analysis reveals molecularly distinct subtypes in retinoblastoma
Authors: Zeng Qi , Wang Sha , Chen Lu , Wang Jinwei 
Published: September 2023

AbstractRetinoblastoma is the most frequent intraocular malignancy in children. Little is known on the molecular basis underlying the biological and clinical behavior of this cancer. Here, using gene expression profiles, we demonstrate the existence of two major retinoblastoma subtypes that can be divided into six subgroups. Subtype 1 has higher expression of cone related genes and higher percentage of RB1 germline mutation. By contrast, subtype 2 tumors harbor more genes with ganglion/neuronal features. The dedifferentiation in subtype 2 is associated with stemness features including low immune infiltration. Gene Otology analysis demonstrates that immune response regulations and visual related pathways are the key molecular difference between subtypes. Subtype 1b has the highest risk of invasiveness across all subtypes. The recognition of these molecular subtypes shed a light on the important biological and clinical perspectives for retinoblastomas.
Alternative beliefs in psychedelic drug users
Authors: Lebedev Alexander V. , Acar Kasim , Horntvedt Otilia , Cabrera Andrés E. , Simonsson Otto , Osika Walter , Ingvar Martin , Petrovic Predrag 
Published: September 2023

AbstractPrevious research has suggested that classical psychedelics can foster significant and enduring changes in personality traits and subjective wellbeing. Despite the lack of evidence for adverse effects on mental health stemming from psychedelic use, concerns persist regarding the capacity of these substances to modulate information processing and attitudes towards factual data. The aim of the present study was to investigate the propensity for accepting alternative facts and the general treatment of knowledge within a sample of 392 participants, 233 of whom reported at least a single incidence of psychedelic use in their lifetime. To do this, we leveraged step-wise methods of linear modelling investigating effects of demographics, psychiatric conditions and concomitant drug use. Our findings revealed a moderate positive association between psychedelic use and beliefs in alternative facts, as well as the specific belief that facts are politically influenced. However, no links were found for favouring intuition over evidence when confirming facts. Among other investigated drugs, only alcohol was negatively associated with beliefs in alternative facts. Taken together, our results support the link between psychedelic use and non-conformist thinking styles, which can be attributed to the psychological effects of the drugs themselves, but may also mirror a common trait related to unconventional beliefs and illicit substance use.
Optimized DC–DC converter based on new interleaved switched inductor capacitor for verifying high voltage gain in renewable energy applications
Authors: Algamluoli Ammar Falah , Wu Xiaohua , Mahmood Mustafa F. 
Published: September 2023

AbstractThis paper introduces an optimized DC–DC converter that employs a modified switched inductor-capacitor technique to achieve ultra-high voltage gain for renewable energy systems. The development is based on adding one cell of modified switched inductor (MSL1) with series diodes interleaved with the main switch in the proposed DC–DC converter. The (MSL1) with capacitor operates in resonant mode to reduce current stress across the main switch when the charge in capacitor becomes zero. This approach also reduces voltage stress across the main switch, all inductors, and diodes. Furthermore, modified switched inductors (MSL2) with an auxiliary switch and a coupled capacitor are incorporated to provide double boosting voltage and to achieve high voltage gain. Additionally, a main and auxiliary switch are integrated with modified switched capacitors (MSC) to provide ultra-high voltage gain and to reduce voltage stress across auxiliary switch. Moreover, the proposed converter exhibits a continuous input current with zero pulsating, even at very low duty cycles. The advantages of the proposed converter are high efficiency, low voltage stress, and low values of inductors and capacitors when utilizing a high switching frequency. A mathematical model for the proposed converter is developed for both continuous conduction mode and discontinuous conduction mode. In addition, the PCB design for the proposed converter is presented, and experimental tests are conducted to verify the simulation and laboratory results. The proposed converter aims to boost the voltage from 20 to 40 V to a variable output voltage between 200 and 400 V, delivering 400 watts of power with an efficiency of 96.2%.
A focusing method on refraction topography measurement
Authors: Yequan Huang , Jingyun Guo , Yu Guo , Yan Cui , Zhechuang Li , Xuechuan Dong , Xiaolin Ning 
Published: September 2023

AbstractThis paper introduces a novel focusing method Refraction Topography (RT) for wide-angle refraction measurement. The agreement of the test results obtained using RT is evaluated against simulation results and expected refraction. RT develops a refraction algorithm on fundus images at various focusing statuses. Unlike conventional techniques for peripheral refraction measurement, RT requires the subject to stare at a stationary fixation target. The refraction algorithm calculates the focus measure for multiple images at the Point of Interest and formulates them into a focus profile. The maximum focus measure correlates with the optimal focus position. Refraction Characterization Function (RCF) is proposed to translate the focus position into refraction determination, thus forming the refraction topography. The refraction characterization of RT optical system is performed using Isabel schematic eye. Three test eyes of − 15 D, 0 D, and + 15 D are defined, and expected refraction is obtained through simulation on an independent test schematic eye. Both simulation results and experimental results are obtained by combining the test eyes and RT system. Test results are compared with simulation results and expected refraction. The study demonstrates agreement among the test results, simulation results, and expected refraction on three test eyes.
A follow-up cohort study on the risk of prediabetes, comparing women with previous preeclamptic or normotensive pregnancies
Authors: Möller Louise B. , Bladh Marie K. , Brismar Kerstin , Palm Klara , Andolf Ellika G. 
Published: September 2023

AbstractStudies have shown that preeclampsia is associated insulin resistance and cardiovascular events later in life. However, knowledge is lacking regarding a possible association between PE and abnormal glucose tolerance/prediabetes. Thus, the current study aimed to compare the prevalence of prediabetes in women with previous severe preeclampsia to women with previous normotensive pregnancies. Women with severe preeclampsia (index women, n = 45) admitted to Danderyds University Hospital in 1999–2004 were compared to women with normotensive pregnancies, matched for age, parity, and year of delivery (control women, n = 53). In 2013–2016 BMI, blood pressure, waist circumference, insulin, C-peptide, hsCRP, Cystatin C, HDL, triglycerides, and HbA1c were measured and an OGTT was performed. Index women had a higher BMI (p < 0.001) and blood pressure (p < 0.001) in early pregnancy. At follow-up, prediabetes was more common among index women (p = 0.001), as were hypertension (p = 0.003), heredity for diabetes/cardiovascular disease (p = 0.020), and a larger waist circumference (p = 0.024). Preeclampsia increased the risk of having a fasting plasma glucose ≥ 5.6 mmol/l (aOR 7.28, 95% CI 2.44–21.76) and of prediabetes 11–16 years after index pregnancy (aOR 4.83, 95% CI 1.80–12.97). In conclusion, preeclampsia increases the risk of prediabetes independent of heredity, hypertension, and waist circumference. These findings may have implications for screening and prevention.
The blackcap (Sylvia atricapilla) genome reveals a recent accumulation of LTR retrotransposons
Authors: Bours Andrea , Pruisscher Peter , Bascón-Cardozo Karen , Odenthal-Hesse Linda , Liedvogel Miriam 
Published: September 2023

AbstractTransposable elements (TEs) are mobile genetic elements that can move around the genome, and as such are a source of genomic variability. Based on their characteristics we can annotate TEs within the host genome and classify them into specific TE types and families. The increasing number of available high-quality genome references in recent years provides an excellent resource that will enhance the understanding of the role of recently active TEs on genetic variation and phenotypic evolution. Here we showcase the use of a high-quality TE annotation to understand the distinct effect of recent and ancient TE insertions on the evolution of genomic variation, within our study species the Eurasian blackcap (Sylvia atricapilla). We investigate how these distinct TE categories are distributed along the genome and evaluate how their coverage across the genome is correlated with four genomic features: recombination rate, gene coverage, CpG island coverage and GC content. We found within the recent TE insertions an accumulation of LTRs previously not seen in birds. While the coverage of recent TE insertions was negatively correlated with both GC content and recombination rate, the correlation with recombination rate disappeared and turned positive for GC content when considering ancient TE insertions.
High endothelial venules predict response to PD-1 inhibitors combined with anti-angiogenesis therapy in NSCLC
Authors: Ye Dafu , Jin Yao , Weng Yiming , Cui Xue , Wang Jinsong , Peng Min , Song Qibin 
Published: September 2023

AbstractTumor-associated high endothelial venules (TA-HEVs) mediate lymphocyte entry into tumors. Therefore, combined anti-angiogenesis therapy and programmed death-1 (PD-1) inhibitors might stimulate tumor immunity. This study will explore the TA-HEVs and real-world data of the combination therapy in non-small cell lung cancer (NSCLC). Firstly, we found a certain relationship between HEVs and immune effector cells by multiple immunofluorescence staining. We then analyzed the efficacy of immunotherapy combined with anti-angiogenesis therapy in advanced NSCLC patients by collecting real-world clinical data. Finally, we explored the predictive value of HEVs in combination therapy by analyzing pre-treatment pathological slides of patients with multiple immunofluorescence and RNA sequencing. Immunofluorescence staining of high endothelial venules (PNAd+) reveals that the frequency of HEVs is positively correlated with tumor-infiltrating stem-like CD8+ T cells (TCF-1+PD-1+) in the TME of advanced NSCLC patients (P = 0.0221). We retrospectively analyzed the efficacy of 96 patients with advanced NSCLC who received PD-1 inhibitors combined with anti-angiogenesis therapy in the real-world. The median PFS of patients combined with anti-angiogenesis therapy was longer than that of patients without anti-angiogenesis therapy (9.7 vs 8.6 months, P = 0.041). Multiple immunofluorescence staining of tumor biopsies before treatment from 14 patients with advanced NSCLC reveals that PNAd+ is predictive of better response and survival upon PD-1 inhibitors combined with anti-angiogenesis therapy (P = 0.0274). In addition, we collected peripheral blood from an effective group of patients for RNA sequencing and found that immune cells activation-related gene expression scores were higher. Combined anti-angiogenic and anti-PD-1 therapy stimulates tumor immunity through TA-HEVs formation. TA-HEVs not only mediate immune cell entry into tumors, but also are associated with the efficacy of PD-1 inhibitors and anti-angiogenesis therapy in NSCLC.
Predicting three-month fasting blood glucose and glycated hemoglobin changes in patients with type 2 diabetes mellitus based on multiple machine learning algorithms
Authors: Tao Xue , Jiang Min , Liu Yumeng , Hu Qi , Zhu Baoqiang , Hu Jiaqiang , Guo Wenmei , Wu Xingwei , Xiong Yu , Shi Xia , Zhang Xueli , Han Xu , Li Wenyuan , Tong Rongsheng , Long Enwu 
Published: September 2023

AbstractFasting blood glucose (FBG) and glycosylated hemoglobin (HbA1c) are key indicators reflecting blood glucose control in type 2 diabetes mellitus (T2DM) patients. The purpose of this study is to establish a predictive model for blood glucose changes in T2DM patients after 3 months of treatment, achieving personalized treatment.A retrospective study was conducted on type 2 diabetes mellitus real-world medical data from 4 cities in Sichuan Province, China from January 2015 to December 2020. After data preprocessing, data inputting, data sampling, and feature screening, 16 kinds of machine learning methods were used to construct prediction models, and 5 prediction models with the best prediction performance were screened respectively. A total of 100,000 cases were included to establish the FBG model, and 2,169 cases were established to establish the HbA1c model. The best prediction model both of FBG and HbA1c finally obtained are realized by ensemble learning and modified random forest inputting, the AUC values are 0.819 and 0.970, respectively. The most important indicators of the FBG and HbA1c prediction model were FBG and HbA1c. Medication compliance, follow-up outcome, dietary habits, BMI, and waist circumference also had a greater impact on FBG levels. The prediction accuracy of the models of the two blood glucose control indicators is high and has certain clinical applicability.HbA1c and FBG are mutually important predictors, and there is a close relationship between them.
The oxidoreductase activity of Rnf balances redox cofactors during fermentation of glucose to propionate in Prevotella
Authors: Zhang Bo , Lingga Christopher , De Groot Hannah , Hackmann Timothy J. 
Published: September 2023

AbstractPropionate is a microbial metabolite formed in the gastrointestinal tract, and it affects host physiology as a source of energy and signaling molecule. Despite the importance of propionate, the biochemical pathways responsible for its formation are not clear in all microbes. For the succinate pathway used during fermentation, a key enzyme appears to be missing—one that oxidizes ferredoxin and reduces NAD. Here we show that Rnf [ferredoxin—NAD+ oxidoreductase (Na+-transporting)] is this key enzyme in two abundant bacteria of the rumen (Prevotella brevis and Prevotella ruminicola). We found these bacteria form propionate, succinate, and acetate with the classic succinate pathway. Without ferredoxin:NAD+ oxidoreductase, redox cofactors would be unbalanced; it would produce almost equal excess amounts of reduced ferredoxin and oxidized NAD. By combining growth experiments, genomics, proteomics, and enzyme assays, we point to the possibility that these bacteria solve this problem by oxidizing ferredoxin and reducing NAD with Rnf [ferredoxin—NAD+ oxidoreductase (Na+-transporting)]. Genomic and phenotypic data suggest many bacteria may use Rnf similarly. This work shows the ferredoxin:NAD+ oxidoreductase activity of Rnf is important to propionate formation in Prevotella species and other bacteria from the environment, and it provides fundamental knowledge for manipulating fermentative propionate production.
Raman spectroscopy and mass spectrometry identifies a unique group of epidermal lipids in active discoid lupus erythematosus
Authors: Holtkamp Hannah U , Aguergaray Claude , Prangnell Kalita , Pook Christopher , Amirapu Satya , Grey Angus , Simpson Cather , Nieuwoudt Michel , Jarrett Paul 
Published: September 2023

AbstractDiscoid lupus erythematosus (DLE) is the most common form of cutaneous lupus1. It can cause permanent scarring. The pathophysiology of is not fully understood. Plasmacytoid dendritic cells are found in close association with apoptotic keratinocytes inferring close cellular signalling. Matrix Associated Laser Desorption Ionisation (MALDI) combined with Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) is an exquisitely sensitive combination to examine disease processes at the cellular and molecular level. Active areas of discoid lupus erythematosus were compared with normal perilesional skin using MALDI combined with FT-ICR-MS. A unique set of biomarkers, including epidermal lipids is identified in active discoid lupus. These were assigned as sphingomyelins, phospholipids and ceramides. Additionally, increased levels of proteins from the keratin, and small proline rich family, and aromatic amino acids (tryptophan, phenylalanine, and tyrosine) in the epidermis are observed. These techniques, applied to punch biopsies of the skin, have shown a distinctive lipid profile of active discoid lupus. This profile may indicate specific lipid signalling pathways. Lipid rich microdomains (known as lipid rafts) are involved in cell signalling and lipid abnormalities have been described with systemic lupus erythematosus which correlate with disease activity.
Growth inhibitory, immunosuppressive, cytotoxic, and genotoxic effects of γ-terpinene on Zeugodacus cucurbitae (Coquillett) (Diptera: Tephritidae)
Authors: Diksha  , Singh Sumit , Mahajan Evani , Sohal Satwinder Kaur 
Published: September 2023

Abstractγ-Terpinene, a monoterpene widely present in essential oils of many medicinal and aromatic plants with numerous biological properties, was evaluated for its insecticidal activity against melon fruit fly, Zeugodacus cucurbitae (Coquillett). Different concentrations (5, 25, 125, 625, and 3125 ppm) of γ-terpinene along with control were fed to larvae of melon fly. The number of pupae formed and adults emerged declined significantly after treatment. Morphologically deformed adults and pupae were also observed. The developmental duration too prolonged in treated larvae. Food assimilated, mean relative growth rate, larval weight gain, and pupal weight also declined. In the larvae treated with LC30 and LC50 concentrations, there was a decline in the titers of phenoloxidase and total hemocyte count, and variations were observed in the differential hemocyte count, suggesting an immunosuppressive effect of γ-terpinene on melon fly. Both concentrations also led to an increase in the apoptotic and necrotic cells as well as decrease in the viable hemocytes in the circulating hemolymph of treated larvae. Comet parameters (tail length, % tail DNA, tail moment, and olive tail moment) of γ-terpinene fed larvae increased significantly. Given the observed effects of γ-terpinene on normal developmental and nutritional physiology, its immunosuppressive properties, and its potential for genome damage, it can be considered for incorporation into integrated pest management strategies for controlling Z. cucurbitae.
The quality of avian vocal duets can be assessed independently of the spatial separation of signallers
Authors: Ręk Paweł , Magrath Robert D. 
Published: September 2023

AbstractInteractions among groups are often mediated through signals, including coordinated calls such as duets, and the degree of temporal coordination within a group can affect signal efficacy. However, in addition to intrinsic duet quality, the spatial arrangement of callers also affects the timing of calls. So, can listeners discriminate temporal effects caused by intrinsic duet quality compared to spatial arrangement? Such discrimination would allow assessment of quality of duets produced by a pair, as distinct from transient extrinsic spatial effects. To address this issue, we studied experimentally the influence of intrinsic duet quality and spatial arrangement on the efficacy of Australian magpie-lark (Grallina cyanoleuca) vocal duets. Breeding pairs duet at varying distances from each other and to multiple neighbours. Coordinated duets are more effective territorial signals than uncoordinated duets, but it remains unclear whether listeners can discriminate the effects of quality and spatial arrangement. Our playback experiment showed that any deviation from perfect regularity of partners’ notes reduced duet efficacy, but that lack of coordination due to spatial separation (slower tempo and offset of notes) had a lower effect on efficacy than effects due to intrinsic quality (irregularity). Our results therefore provide experimental evidence that the temporal organisation of group vocalisations could signal coalition quality independently of spatial effects.
Mixed reality drills of indoor earthquake safety considering seismic damage of nonstructural components
Authors: Xu Zhen , Yang Yajun , Zhu Yian , Fan Jingjing 
Published: September 2023

AbstractThe damaged indoor nonstructural components in the earthquake often cause casualties. To improve the indoor earthquake safety capacity of occupants, a mixed reality (MR) drill method for indoor earthquake safety considering seismic damage of nonstructural components is proposed. First, an MR device, HoloLens, is used to capture indoor point clouds, and the indoor three-dimensional scene is reconstructed using point clouds. Subsequently, the seismic motion models of indoor components are established, so that the indoor nonstructural seismic damage scene is constructed using the physics engine and displayed using HoloLens. Finally, a guidance algorithm for a safe zone was designed for the drills. Taking a typical office as an example, an indoor earthquake safety drill was performed. The drill results show that the proposed MR method can increase the average efficiency of moving to a safe zone by 43.1%. Therefore, the outcome of this study can effectively improve the earthquake safety ability of occupants, thereby reducing casualties.
Predicting the impact of climate change on the potential distribution of the invasive tomato pinworm Phthorimaea absoluta (Meyrick) (Lepidoptera: Gelechiidae)
Authors: Azrag Abdelmutalab G. A. , Obala Francis , Tonnang Henri E. Z. , Hogg Brian N. , Ndlela Shepard , Mohamed Samira A. 
Published: September 2023

AbstractPhthorimaea absoluta (Meyrick) (= Tuta absoluta) (Lepidoptera: Gelechiidae), is the most damaging insect pest threatening the production of tomato and other solanaceous vegetables in many countries. In this study, we predicted the risk of establishment and number of generations for P. absoluta in the current and future climatic conditions under two Shared Socioeconomic Pathways (SSP2-4.5 and SSP5-8.5) of the years 2050 and 2070 using insect life cycle modelling (ILCYM) software. We used a temperature-dependent phenology model to project three risk indices viz., establishment risk index (ERI), generation index (GI), and activity index (AI) based on temperature data. The model projected large suitable areas for P. absoluta establishment in the Southern hemisphere under current and future climatic scenarios, compared to the Northern part. However, the risk of P. absoluta is expected to increase in Europe, USA, Southern Africa, and some parts of Asia in the future. Under current conditions, P. absoluta can complete between 6 and 16 generations per year in suitable areas. However, an increase in GI between 1 and 3 per year is projected for most parts of the world in the future, with an increase in AI between 1 and 4. Our results provide information on the risk of establishment of P. absoluta which could guide decision-makers to develop control strategies adapted for specific agro-ecological zones.