bluuebunny/crossref_metadata_2025_split huggingface dataset:
Hyperdiploidy Plus Nonamplified MYCN Confers a Favorable Prognosis in Children 12 to 18 Months Old With Disseminated Neuroblastoma: A Pediatric Oncology Group Study
Authors: George Rani E. , London Wendy B. , Cohn Susan L. , Maris John M. , Kretschmar Cynthia , Diller Lisa , Brodeur Garrett M. , Castleberry Robert P. , Look A. Thomas 
Published: August 2005

Purpose To determine predictive strength of tumor cell ploidy and MYCN gene amplification on survival of children older than 12 months with disseminated neuroblastoma (NB). Patients and Methods Of 648 children with stage D NB enrolled onto the Pediatric Oncology Group NB Biology Study 9047 (1990-2000), 560 children were assessable for ploidy and MYCN amplification. Treatment of patients older than 12 months varied; most receiving high-dose chemotherapy with stem-cell rescue. Infants received standard chemotherapy, depending on MYCN status and ploidy. Results Among stage D MYCN-amplified patients, 4-year event-free survival (EFS) ± SE had no prognostic significance for tumor cell ploidy for patients either younger than 12 months or ≥ 12 months old. However, among stage D nonamplified-MYCN patients, 4-year EFS for those with tumor hyperdiploidy (DNA index [DI] > 1) was clearly superior to those with diploidy (DI ≤ 1): younger than 12 months, 83.7% ± 4.4% (n = 87) versus 46.2% ± 13.8% (n = 13; P = .0003); and for 12- to 24-month-old children, 72.7% ± 10.2% (n = 22) versus 26.7% ± 13.2% (n = 16; P = .0092). Further analysis suggested better prognoses in the 12- to 18-month-old subgroup with hyperdiploid tumors (4-year EFS, 92.9% ± 7.2%) compared with the 19- to 24-month-old subgroup (4-year EFS, 37.5% ± 21.0%; P = .0037). In children older than 24 months, outcome was dire (< 20% long-term survival), regardless of ploidy or MYCN status. Conclusion Children 12 to 18 months old with metastatic NB had favorable outcomes with high-dose therapy if their tumors were hyperdiploid and lacked MYCN amplification. This subgroup may respond well to contemporary chemotherapy, and could be spared intensive myeloablative therapy with stem-cell rescue.
Genetic Relationships among Herpes-Like Viruses Isolated from Sturgeon
Authors: Kelley Garry O. , Waltzek Thomas B. , McDowell Terry S. , Yun Susan C. , LaPatra Scott E. , Hedrick Ronald P. 
Published: August 2005

Abstract
We report the identification of partial DNA polymerase gene sequences of seven herpes-like viruses found in sturgeon Acipenser spp. from North America and Europe. Phenetic comparisons using nucleic acid and deduced protein alignments divided the sturgeon herpes-like viruses into three genogroups. The first genogroup includes the previously described Acipenserid herpesvirus 1 (AciHV-1) and two new isolates from farmed white sturgeon A. transmontanus from California and wild white sturgeon from Idaho. The second genogroup contains the previously described Acipenserid herpesvirus 2 (AciHV-2) and a new isolate from wild white sturgeon found in Oregon. The third genogroup includes two viruses with identical amino acid sequences found in farmed white sturgeon from Italy and Canada. We propose to name the third sturgeon herpes-like genogroup Acipenserid herpesvirus 3 (AciHV-3). The phylogram used for comparing the relationships of these viruses shows strong bootstrap support (82%) for two separate clades among the sturgeon herpes-like viruses. One clade includes all the AciHV-1 isolates, whereas the other clade is divided into subclades. Interestingly, the subclade containing AciHV-2 branches outside the sister relationship between Ictalurid herpesvirus 1 and AciHV-3. An examination of the genogroups indicates that a prior hypothesis that AciHV-2 may have rapidly evolved from AciHV-1 is unlikely; instead, we suggest that AciHV-2 represents a more recent introduction of a new strain of virus to sturgeon farms in California. Lastly, the phylogenetic comparisons strongly suggest a pattern of spatial separation and independent evolution of the herpes-like viral genogroups found in sturgeon.
Quantification of contaminant sorption-desorption time scales from batch experiments
Authors: Cunningham Jeffrey A. , Deitsch James J. , Smith James A. , Reinhard Martin 
Published: August 2005

Abstract
The ability to predict rates of contaminant sorption and desorption in the environment is essential in order to determine contaminant bioavailability, predict contaminant fate and transport, and assess risk. In this paper, we present a new method to determine sorption-desorption time scales from the temporal moments of batch experimental data. Here, the term time scale has a precise meaning: Time scales are defined in terms of the parameters of kinetic sorption models. The method can be implemented with either a diffusion-based model (tdiff = a2/15D) or a linear-driving-force model (tLDF = 1/k) for sorption kinetics and can be implemented with either a discrete or a continuous distribution of rate parameters. Three advantages to the new method are that the time scales tdiff or tLDF can be calculated directly without best-fitting the experimental data, the calculated sorption-desorption time scales are not dependent on an arbitrarily chosen distribution (e.g., the commonly used gamma or lognormal distributions), and the time scales implied by the analysis are consistent with the time scale of the actual experiment. We apply the method to previously reported experiments of 1,2-dichlorobenzene (DCB) sorption onto four natural sorbents. Comparing the newly calculated sorption-desorption time scales to those reported previously indicates a different order for the four sorbents with regard to DCB sorption rate. Further applications and limitations of the method are discussed.
Combined effects of the fungicide propiconazole and agricultural runoff sediments on the aquatic bryophyte Vesicularia dubyana
Authors: Wu Qinglan , Riise Gunnhild , Pflugmacher Stephan , Greulich K. , Steinberg Christian E. W. 
Published: August 2005

Abstract
Pesticides, firmly attached to the topsoil, might enter nearby watercourses at periods with high erosive loss of sediments. Therefore, exposure of aquatic organisms to these low mobility pesticides, in many cases, will coincide with a high sediment concentration. In this study, both individual and combined effects of propiconazole and runoff sediment on the aquatic model bryophyte Vesicularia dubyana are studied. Individual exposure to propiconazole induced responses in V. dubyana at rather low concentration levels (˜1 μg/L), showing that harmful effects of propiconazole potentially may occur in watercourses draining propiconazole-treated fields. Individual exposure to the sediment size fractions S1 (0.16–2 μm) and S2 (0.03–0.16 μm) caused plant stress at a concentration of 100 mg/L. The coarser fraction S1 showed strong inhibition effects on photosynthesis, probably due to light attenuation. Compared to S1, the suspension with the finer fraction S2 showed lower turbidity, higher nutrient content, and a higher proportion of sediment-bound propiconazole. The combined effects of propiconazole and suspended sediment are dependent on concentrations of sediment and propiconazole. At low sediment concentration (e.g., 100 mg/L), neither S1 nor S2 reduce the toxicity of propiconazole, as only 2% of propiconazole are bound to particles. An increase in sediment concentration decreases the bioavailable concentration of propiconazole; however, at the same time, this increases the turbidity, thereby inhibiting plant photosynthesis.
Validation of the narcosis target lipid model for petroleum products: Gasoline as a case study
Authors: McGrath Joy A. , Parkerton Thomas F. , Hellweger Ferdi L. , Di Toro Dominic M. 
Published: August 2005

Abstract
The narcosis target lipid model (NTLM) was used to predict the toxicity of water-accommodated fractions (WAFs) of six gasoline blending streams to algae (Pseudokirchnereilla subcapitata, formerly Selenastrum capricornutum), juvenile rainbow trout (Oncorhynchus mykiss), and water flea (Daphnia magna). Gasolines are comprised of hydrocarbons that on dissolution into the aqueous phase are expected to act via narcosis. Aquatic toxicity data were obtained using a lethal-loading test in which WAFs were prepared using different gasoline loadings. The compositions of the gasolines were determined by analysis of C3 to C13 hydrocarbons grouped in classes of n-alkanes, iso-alkanes, aromatics, cyclic alkanes, and olefins. A model was developed to compute the concentrations of hydrocarbon blocks in WAFs based on gasoline composition and loading. The model accounts for the volume change of the gasoline, which varies depending on loading and volatilization loss. The predicted aqueous composition of WAFs compared favorably to measurements, and the predicted aqueous concentrations of WAFs were used in the NTLM to predict the aquatic toxicity of the gasolines. For each gasoline loading and species, total toxic units (TUs) were computed with an assumption of additivity. The acute toxicity of gasolines was predicted to within a factor of two for algae and daphnids. Predicted TUs overestimated toxicity to trout because of experimental factors that were not considered in the model. This analysis demonstrates the importance of aliphatic hydrocarbon loss to headspace during WAF preparation and the contribution of both aromatic and aliphatic hydrocarbons test to the toxicity of gasolines in closed systems and loss of aliphatics to headspace during WAF preparation. Model calculations indicate that satisfactory toxicity predictions can be achieved by describing gasoline composition using a limited number of aromatic and aliphatic hydrocarbon blocks with different octanol-water partition coefficients.
Evolution of cadmium resistance in Daphnia magna
Authors: Ward Timothy J. , Robinson William E. 
Published: August 2005

Abstract
A diverse laboratory population of Daphnia magna Straus was established by combining individuals from eight sources. Artificial selection for increased resistance to the acute toxic effects of cadmium was performed, and after eight generations, the average median effective concentration increased from 61 to 180 μg/L. No differences in life span, offspring production, time to first brood, number of offspring in the first brood, or intrinsic rate of population increase (r) were observed between the cadmium-adapted population and the controls under ideal conditions or under conditions of temperature or feeding ration stress, but cadmium-adapted daphnids were smaller. Control and cadmium-adapted populations were equally sensitive to copper and malathion, but the cadmium-adapted population was less sensitive to lead and more sensitive to phenol. Analysis of amplified fragment-length polymorphisms indicated a significant decrease in genetic diversity in the cadmium-adapted population. Although the evolved cadmium resistance would allow adapted populations to exist in areas where cadmium concentrations would be toxic to unadapted populations, the decreased genetic diversity, smaller size, and increased sensitivity to at least one other toxicant could reduce the probability of long-term survival even in the absence of future cadmium exposure.
Determination and distribution of alkyl ethoxysulfates and linear alkylbenzene sulfonates in coastal marine sediments from the Bay of Cadiz (southwest of Spain)
Authors: Lara-Martín Pablo A. , Gómez-Parra Abelardo , González-Mazo Eduardo 
Published: August 2005

Abstract
The distribution of the two main anionic surfactants manufactured and used in the world, alkyl ethoxysulfates (AES) and linear alkylbenzene sulfonates (LAS), has been studied in sediments from a salt marsh and an estuary of the Bay of Cadiz (southwest of Spain). The identification and quantification of AES and LAS was carried out after automated Soxhlet extraction with methanol, followed by solid-phase extraction and liquid chromatography coupled to electrospray mass spectrometry. The latter procedure permitted the unequivocal identification of every LAS homologue as well as the AES homologues of up to 16 carbon atoms in their alkyl chain and of up to 12 ethylene oxide groups. Recoveries were in the range of 51% to 84% and limits of detection from 1 to 5 μg/kg. We have focused our attention particularly on AES because, in spite of their great use, these compounds have received less attention than LAS and their occurrence has not been described in marine environmental samples. Alkyl ethoxysulfates concentration values range between 100 and 400 μg/kg in the topmost layer of sediments at the sampling areas. The relative distribution of AES homologues shows higher percentages for the longer alkyl chain homologues in sediments as well as for the shorter ethoxymers. A decrease in LAS concentrations has been found relative to past studies in one of the sampling areas as a consequence of the reduction of urban wastewater discharges.
Using aquatic macroinvertebrate species traits to build test batteries for sediment toxicity assessment: Accounting for the diversity of potential biological responses to toxicants
Authors: Ducrot Virginie , Usseglio-Polatera Philippe , Péry Alexandre R. R. , Mouthon Jacques , Lafont Michel , Roger Marie-Claude , Garric Jeanne , Férard Jean-François 
Published: August 2005

Abstract
An original species-selection method for the building of test batteries is presented. This method is based on the statistical analysis of the biological and ecological trait patterns of species. It has been applied to build a macroinvertebrate test battery for the assessment of sediment toxicity, which efficiently describes the diversity of benthic macroinvertebrate biological responses to toxicants in a large European lowland river. First, 109 potential representatives of benthic communities of European lowland rivers were selected from a list of 479 taxa, considering 11 biological traits accounting for the main routes of exposure to a sediment-bound toxicant and eight ecological traits providing an adequate description of habitat characteristics used by the taxa. Second, their biological and ecological trait patterns were compared using coinertia analysis. This comparison allowed the clustering of taxa into groups of organisms that exhibited similar life-history characteristics, physiological and behavioral features, and similar habitat use. Groups exhibited various sizes (7–35 taxa), taxonomic compositions, and biological and ecological features. Main differences among group characteristics concerned morphology, substrate preferendum and habitat utilization, nutritional features, maximal size, and life-history strategy. Third, the best representatives of the mean biological and ecological characteristics of each group were included in the test battery. The final selection was composed of Chironomus riparius (Insecta: Diptera), Branchiura sowerbyi (Oligochaeta: Tubificidae), Lumbriculus variegatus (Oligochaeta: Lumbriculidae), Valvata piscinalis (Gastropoda: Valvatidae), and Sericostoma personatum (Trichoptera: Sericostomatidae). This approach permitted the biological and ecological variety of the battery to be maximized. Because biological and ecological traits of taxa determine species sensitivity, such maximization should permit the battery to better account for the sensitivity range within a community.
Influence of food limitation on the effects of fenvalerate pulse exposure on the life history and population growth rate of Daphnia magna
Authors: Pieters Barry J. , Paschke Albrecht , Reynaldi Sebastián , Kraak Michiel H. S. , Admiraal Wim , Liess Matthias 
Published: August 2005

Abstract
Laboratory ecotoxicity tests may not adequately evaluate the effects of pesticides, because they often do not include more environmentally relevant conditions, such as pulsed toxicant exposures and low food conditions. Therefore, we tested the effects of a pulse of the pyrethroid insecticide fenvalerate (FV) on the life history and population growth rate (r) of the cladoceran Daphnia magna. The daphnids were subjected to a 24-h pesticide pulse exposure (0.03, 0.1, 0.3, 0.6, 1.0, and 3.2 μg/L) under high and low food conditions and were monitored for 21 d. Chemical analysis showed that at t = 1 h, the nominal FV concentrations were reduced by 50 to 66%. Fenvalerate decreased survival and growth in the week following pulse exposure. Age at first reproduction increased, with consequent adverse effects on cumulative reproduction per living female and, therefore, on r. Thus, a short-term exposure of FV caused a long-term reduction on r as a result of increased mortality and a delay in development. Low food conditions exacerbated the effects of the FV exposure on juvenile survival and growth during the first week. This caused a much stronger reduction in r under low food conditions. We concluded that a pulsed FV exposure may result in long-term reduction of r that can be predicted only with more environmentally relevant toxicity tests, as described in the present study.
Nondestructive pollution exposure assessment in the european hedgehog (Erinaceus europaeus): I. Relationships between concentrations of metals and arsenic in hair, spines, and soil
Authors: D'Havé Helga , Scheirs Jan , Mubiana Valentine Kayawe , Verhagen Ron , Blust Ronny , De Coen Wim 
Published: August 2005

Abstract
Conventional metal exposure assessment in terrestrial mammals is generally based on organ analyses of sacrificed animals. Few studies on mammals use nondestructive methodologies despite the growing ethical concern over the use of destructive sampling. Nondestructive methods involve minimal stress to populations and permit successive biomonitoring of the same populations and individuals. In the present study we assessed metal exposure of hedgehogs (Erinaceus europaeus) by investigating relationships between concentrations of metals (Ag, Al, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, Zn) and As in soil samples and in hair and spines of hedgehogs. Samples were collected in seven study sites along a metal pollution gradient, characterized by decreasing total soil Ag, As, Cd, Cu, Ni, and Pb concentrations with increasing distance from a nonferrous metallurgic factory. For a number of elements, soil contamination was related both to distance to the smelter and to habitat. Soil concentrations were positively related to levels in hair and spines for Ag, As, Cd, and Pb and thus to hedgehog exposure. Metal concentrations in soil did not relate to metal concentrations in hair and spines for essential elements (e.g., Cu, Fe, Mn, Ni, and Zn), except Co in hair and soil. Our results demonstrate that, at least for nonessential elements, concentrations in soils can be used to predict contamination of these elements in hedgehogs or vice versa. Furthermore, hedgehog exposure increased toward the smelter and was higher for hedgehogs foraging in grasslands than for animals foraging in the forest. Moreover, we believe that hair and spines are promising tools in terrestrial wildlife exposure assessment studies of metals and As.
The Prestige oil spill. I. Biodegradation of a heavy fuel oil under simulated conditions
Authors: Díez Sergi , Sabaté Jordi , Viñas Marc , Bayona Josep M. , Solanas Anna M. , Albaigés Joan 
Published: August 2005

Abstract
In vitro biodegradation of the Prestige heavy fuel oil has been carried out using two microbial consortia obtained by enrichment in different substrates to simulate its environmental fate and potential utility for bioremediation. Different conditions, such as incubation time (i.e., 20 or 40 d), oil weathering, and addition of an oleophilic fertilizer (S200), were evaluated. Weathering slowed down the degradation of the fuel oil, probably because of the loss of lower and more labile components, but the addition of S200 enhanced significantly the extension of the biodegradation. n-Alkanes, alkylcyclohexanes, alkylbenzenes, and the two- to three-ring polycyclic aromatic hydrocarbons (PAHs) were degraded in 20 or 40 d of incubation of the original oil, whereas the biodegradation efficiency decreased for higher PAHs and with the increase of alkylation. Molecular markers were degraded according to the following sequence: Acyclic isoprenoids &lt; diasteranes &lt; C27-steranes &lt; ββ-steranes &lt; homohopanes &lt; monoaromatic steranes &lt; triaromatic steranes. Isomeric selectivity was observed within the C1- and C2-phenanthrenes, dibenzothiophenes, pyrenes, and chrysenes, providing source and weathering indices for the characterization of the heavy oil spill. Acyclic isoprenoids, C27-steranes, C1- and C2-naphthalenes, phenanthrenes, and dibenzothiophenes were degraded completely when S200 was used. The ratios of the C2- and C3-alkyl homologues of fluoranthene/pyrene and chrysene/benzo[a]anthracene are proposed as source ratios in moderately degraded oils. The 4-methylpyrene and 3-methylchrysene were refractory enough to serve as conserved internal markers in assessing the degradation of the aromatic fraction in a manner similar to that of hopane, as used for the aliphatic fraction.
Impacts of nonpoint inputs from potato farming on populations of slimy sculpin (Cottus cognatus)
Authors: Gray Michelle A. , Curry R. Allen , Munkittrick Kelly R. 
Published: August 2005

Abstract
The potential influence of agricultural activity, particularly potato cultivation, on slimy sculpin populations (Cottus cognatus) was examined at 19 rivers of New Brunswick, Canada. Comparisons with forested streams resulted in differences in fish density, size, and reproductive performance. Young-of-the-year (YOY) sculpin were present only at two of 11 agricultural sites, though they were present at all nine forested sites. Sediment deposition was greatest at agricultural sites, with increased fine sediments deposited. Larger, coarse sands were deposited at two sites with active forest operations. Temperature had a stronger correlation than sedimentation with sculpin size and density in the agricultural region. Agricultural catchments were warmer than in forested catchments (median = 16.0 and 13.3°C, respectively). Body size of slimy sculpin was correlated positively and YOY densities correlated negatively with temperature, and sites with temperatures ≥25°C were devoid of YOY sculpin. Our data indicate there is a significant effect of temperature on slimy sculpin populations in rivers of potato farming areas, highlighting the importance of examining indirect factors when investigating possible impacts of nonpoint source agricultural inputs. Indirect factors such as sediment deposition and temperature need to be considered in order to discriminate accurately the chronic impacts of agricultural chemicals on fish populations.