bluuebunny/crossref_metadata_2025_split huggingface dataset:
Enhancing Clear Radiance Generation for Geostationary Hyperspectral Infrared Sounder Using High Temporal Resolution Information
Authors: Di Di , Li Jun , Li Zhenglong , Zheng Jing , Gong Xinya 
Published: January 2024

AbstractWith high spatio‐temporal resolution geostationary hyperspectral infrared sounder (GeoHIS) observations, monitoring, and predicting rapidly changing weather events are expected to be improved with continuous information of 3D weather cube. However, due to the nature of radiation, clouds prevent an adequate retrieval of atmospheric thermodynamic information under clear‐sky conditions due to large uncertainties in the current radiative transfer model. Removing cloud effects from GeoHIS sub‐footprint is an alternative approach for enhancing clear radiance generation. Such cloud removal can be achieved through the optimal cloud‐clearing (OCC) method, which usually relies on the assumption of atmospheric spatial homogeneity. With high temporal resolution observations from GeoHIS, cloud removal can also be achieved through OCC but using the assumption of temporal homogeneity. This concept was demonstrated using 15‐min Geostationary Interferometric Infrared Sounder (GIIRS) observations. The longwave GIIRS clear radiances under partially cloud cover can be effectively produced with observation errors less than 0.02 ± 0.86 K and 0.04 ± 0.77 K for 11 and 12 μm, respectively.
Activation of RMTg projections to the VTA reverse cocaine-induced molecular adaptation in the reward system
Authors: Khayat A. , Yaka R. 
Published: January 2024

AbstractThe rostromedial tegmental nucleus (RMTg) plays a crucial role in regulating reward-related behavior by exerting inhibitory control over the ventral tegmental area (VTA). This modulation of dopamine neuron activity within the VTA is essential for maintaining homeostasis in the reward system. Recently we have shown that activation of RMTg projections to the VTA during the acquisition of cocaine-conditioned place preference (CPP) reduces the rewarding properties of cocaine and decreases VTA dopamine neuron activity. By inhibiting dopamine neurons in the VTA, we hypothesized that RMTg projections hold the potential to restore reward system homeostasis disrupted by repeated cocaine use, and attenuate molecular adaptations in the reward system, including alterations in signaling pathways. Our study demonstrates that enhancing the GABAergic inputs from the RMTg to the VTA can mitigate cocaine-induced molecular changes in key regions, namely the VTA, nucleus accumbens (NAc), and prefrontal cortex (PFC). Specifically, we found that cocaine-induced alteration in the phosphorylation state of ERK (pERK) and GluA1 on serine 845 (S845) and serine 831 (S831), that play a major role in plasticity by controlling the activity and trafficking of AMPA receptors, were significantly reversed following optic stimulation of RMTg afferents to the VTA. These findings highlight the therapeutic potential of targeting the RMTg-VTA circuitry for mitigating cocaine reward. Ultimately, this research may pave the way for novel therapeutic interventions that restore balance in the reward system and alleviate the detrimental effects of cocaine.
CHEK2 knockout is a therapeutic target for TP53-mutated hepatocellular carcinoma
Authors: Chen Yuyan , Zhu Zhengyi , Wu Xingyu , Li Hui , Guan Wenxian , Ren Haozhen 
Published: January 2024

AbstractCurrently, there is still a lack of novel and effective drug targets to improve the prognosis of hepatocellular carcinoma (HCC). Additionally, the role of CHEK2 in HCC has not been reported yet. The eQTLgen database and two HCC Genome-Wide Association Study (GWAS) datasets (ieu-b-4953, ICD10 C22.0) were used to find the drug target: CHEK2. Next, Colony, Edu, β-gal, and cell cycle analysis were facilitated to evaluate the role of CHEK2 knockout in HCC. In addition, Nultin-3 was added to evaluate the apoptosis of TP53-mutated HCC cells with CHEK2 knockout. Furthermore, MitoSox, electron microscopy, mitochondrial ATP, and NADH+/NADH levels were assessed in the CHEK2 knockout HCC cells with or without Metformin. Finally, cell-derived tumor xenograft was used to evaluate the role of CHEK2 knockout in vivo. We initially identified a potential drug target, CHEK2, through GWAS data analysis. Furthermore, we observed a significant upregulation of CHEK2 expression in HCC, which was found to be correlated with a poor prognosis. Subsequently, the results indicated that knocking out CHEK2 selectively affects the proliferation, cell cycle, senescence, and apoptosis of TP53-mutant HCC cells. Additionally, the introduction of Nultin-3 further intensified the functional impact on TP53-mutant cells. Then ClusterProfiler results showed high CHEK2 and TP53 mutation group was positively enriched in the mitochondrial ATP pathway. Then we used MitoSox, electron microscopy, mitochondrial ATP, and NADH + /NADH assay and found knockout of CHECK could induce the ATP pathway to inhibit the growth of HCC. Our research introduces a novel drug target for TP53-mutant HCC cells via mitochondrial ATP, addressing the limitation of Nultin-3 as a standalone treatment that does not induce tumor cell death.
Mode-dependent magnonic noise
Authors: Furukawa Ryo , Nezu Shoki , Eguchi Takuro , Sekiguchi Koji 
Published: January 2024

Abstract
The performance of magnonic devices such as converters, switches, and multiplexers greatly depends on magnonic noise. While a peculiar discrete magnonic noise has been previously reported, the sources of underlying magnon dynamics occurring in high-magnon density conditions have not been clarified. Here, zero-span measurements of the spectrum analyzer were recorded to accurately detect magnonic noise as a fluctuation of the spin-wave amplitude. The results of low-frequency magnonic noise demonstrated a spin-wave mode dependency, indicating the existence of a peculiar magnon surface state. Furthermore, the energy thresholds of four-magnon scattering and autooscillation were determined using magnonic white noise. The noise data obtained in this study can help promote theoretical and experimental research on magnons.
Ultrabroadband absorptive refractory plasmonics for photocatalytic hydrogen evolution reactions
Authors: Go Myeongcheol , Hong Inju , Lee Dasol , Kim Sanghoon , Jang Junho , Kim Keon-Woo , Shim Sangmin , Yong Kijung , Rho Junsuk , Kim Jin Kon 
Published: January 2024

Abstract
As an environmentally friendly and renewable method for hydrogen production powered by solar energy, photocatalytic hydrogen evolution reactions (HERs) using broadband absorbers have received much attention. Here, we report the fabrication and characterization of an ultrabroadband absorber for the photocatalytic HER. The absorber is composed of titanium nitride and titanium dioxide heterostructures deposited onto a porous anodized aluminum oxide template. The absorber shows ultrabroadband absorption in both the visible and near-infrared regions (400–2500 nm), with averages of 99.1% and 80.1%, respectively. Additionally, the presence of the TiO2 layer within the absorber extends the lifetime of the hot carriers by 2.7 times longer than that without the TiO2 layer, enhancing the transfer of hot electrons and improving the efficiency of hydrogen production by 1.9 times. This novel ultrabroadband absorber has potential use in advanced photocatalytic HER applications, providing a sustainable and cost-effective route for hydrogen generation from solar energy.
Endothelial leakiness elicited by amyloid protein aggregation
Authors: Li Yuhuan , Ni Nengyi , Lee Myeongsang , Wei Wei , Andrikopoulos Nicholas , Kakinen Aleksandr , Davis Thomas P. , Song Yang , Ding Feng , Leong David Tai , Ke Pu Chun 
Published: January 2024

AbstractAlzheimer’s disease (AD) is a major cause of dementia debilitating the global ageing population. Current understanding of the AD pathophysiology implicates the aggregation of amyloid beta (Aβ) as causative to neurodegeneration, with tauopathies, apolipoprotein E and neuroinflammation considered as other major culprits. Curiously, vascular endothelial barrier dysfunction is strongly associated with Aβ deposition and 80-90% AD subjects also experience cerebral amyloid angiopathy. Here we show amyloid protein-induced endothelial leakiness (APEL) in human microvascular endothelial monolayers as well as in mouse cerebral vasculature. Using signaling pathway assays and discrete molecular dynamics, we revealed that the angiopathy first arose from a disruption to vascular endothelial (VE)-cadherin junctions exposed to the nanoparticulates of Aβ oligomers and seeds, preceding the earlier implicated proinflammatory and pro-oxidative stressors to endothelial leakiness. These findings were analogous to nanomaterials-induced endothelial leakiness (NanoEL), a major phenomenon in nanomedicine depicting the paracellular transport of anionic inorganic nanoparticles in the vasculature. As APEL also occurred in vitro with the oligomers and seeds of alpha synuclein, this study proposes a paradigm for elucidating the vascular permeation, systemic spread, and cross-seeding of amyloid proteins that underlie the pathogeneses of AD and Parkinson’s disease.
Genetic architecture distinguishes tinnitus from hearing loss
Authors: Clifford Royce E. , Maihofer Adam X. , Chatzinakos Chris , Coleman Jonathan R. I. , Daskalakis Nikolaos P. , Gasperi Marianna , Hogan Kelleigh , Mikita Elizabeth A. , Stein Murray B. , Tcheandjieu Catherine , Telese Francesca , Zuo Yanning , Ryan Allen F. , Nievergelt Caroline M. 
Published: January 2024

AbstractTinnitus is a heritable, highly prevalent auditory disorder treated by multiple medical specialties. Previous GWAS indicated high genetic correlations between tinnitus and hearing loss, with little indication of differentiating signals. We present a GWAS meta-analysis, triple previous sample sizes, and expand to non-European ancestries. GWAS in 596,905 Million Veteran Program subjects identified 39 tinnitus loci, and identified genes related to neuronal synapses and cochlear structural support. Applying state-of-the-art analytic tools, we confirm a large number of shared variants, but also a distinct genetic architecture of tinnitus, with higher polygenicity and large proportion of variants not shared with hearing difficulty. Tissue-expression analysis for tinnitus infers broad enrichment across most brain tissues, in contrast to hearing difficulty. Finally, tinnitus is not only correlated with hearing loss, but also with a spectrum of psychiatric disorders, providing potential new avenues for treatment. This study establishes tinnitus as a distinct disorder separate from hearing difficulties.
Neural representations of situations and mental states are composed of sums of representations of the actions they afford
Authors: Thornton Mark A. , Tamir Diana I. 
Published: January 2024

AbstractHuman behavior depends on both internal and external factors. Internally, people’s mental states motivate and govern their behavior. Externally, one’s situation constrains which actions are appropriate or possible. To predict others’ behavior, one must understand the influences of mental states and situations on actions. On this basis, we hypothesize that people represent situations and states in terms of associated actions. To test this, we use functional neuroimaging to estimate neural activity patterns associated with situations, mental states, and actions. We compute sums of the action patterns, weighted by how often each action occurs in each situation and state. We find that these summed action patterns reconstructed the corresponding situation and state patterns. These results suggest that neural representations of situations and mental states are composed of sums of their action affordances. Summed action representations thus offer a biological mechanism by which people can predict actions given internal and external factors.
A generative model of memory construction and consolidation
Authors: Spens Eleanor , Burgess Neil 
Published: January 2024

AbstractEpisodic memories are (re)constructed, share neural substrates with imagination, combine unique features with schema-based predictions and show schema-based distortions that increase with consolidation. Here we present a computational model in which hippocampal replay (from an autoassociative network) trains generative models (variational autoencoders) to (re)create sensory experiences from latent variable representations in entorhinal, medial prefrontal and anterolateral temporal cortices via the hippocampal formation. Simulations show effects of memory age and hippocampal lesions in agreement with previous models, but also provide mechanisms for semantic memory, imagination, episodic future thinking, relational inference and schema-based distortions including boundary extension. The model explains how unique sensory and predictable conceptual elements of memories are stored and reconstructed by efficiently combining both hippocampal and neocortical systems, optimizing the use of limited hippocampal storage for new and unusual information. Overall, we believe hippocampal replay training generative models provides a comprehensive account of memory construction, imagination and consolidation.
COMPAS-2: a dataset of cata-condensed hetero-polycyclic aromatic systems
Authors: Mayo Yanes Eduardo , Chakraborty Sabyasachi , Gershoni-Poranne Renana 
Published: January 2024

AbstractPolycyclic aromatic systems are highly important to numerous applications, in particular to organic electronics and optoelectronics. High-throughput screening and generative models that can help to identify new molecules to advance these technologies require large amounts of high-quality data, which is expensive to generate. In this report, we present the largest freely available dataset of geometries and properties of cata-condensed poly(hetero)cyclic aromatic molecules calculated to date. Our dataset contains ~500k molecules comprising 11 types of aromatic and antiaromatic building blocks calculated at the GFN1-xTB level and is representative of a highly diverse chemical space. We detail the structure enumeration process and the methods used to provide various electronic properties (including HOMO-LUMO gap, adiabatic ionization potential, and adiabatic electron affinity). Additionally, we benchmark against a ~50k dataset calculated at the CAM-B3LYP-D3BJ/def2-SVP level and develop a fitting scheme to correct the xTB values to higher accuracy. These new datasets represent the second installment in the COMputational database of Polycyclic Aromatic Systems (COMPAS) Project.
German yield and area data for 11 crops from 1979 to 2021 at a harmonized spatial resolution of 397 districts
Authors: Duden Christoph , Nacke Christina , Offermann Frank 
Published: January 2024

AbstractLong time series with spatially highly resolved crop data are important for research projects on numerous future challenges in the environment and food sector. In this publication, we describe a dataset with crop-yield and area data for Germany from 1979 to 2021. The data are spatially resolved to 397 districts, which have an average size of 900 km2, and include the crops spring barley, winter barley, grain maize, silage maize, oats, potatoes, winter rape, rye, sugarbeet, triticale and winter wheat. The crop-yield data cover, on average, about 9.5 million hectares per year and 80% of Germany’s total arable land. The dataset contains 214,820 yield and area data points. These were obtained by collecting and digitizing crop data from multiple statistical sources and transforming the data to match the district boundaries in 2020. Potential applications of the data include the analysis of interactions between agricultural yields and environmental factors, such as weather; the validation of yield prediction methodologies or the analysis of yield-loss risks in agriculture.
Unravelling the dynamics of genotype and environment interactions on chilli (Capsicum annuum L.) yield-related attributes in soilless planting systems
Authors: Sahmat Siti Sahmsiah , Rafii Mohd Yusop , Oladosu Yusuff , Jusoh Mashitah , Hakiman Mansor , Mohidin Hasmah 
Published: January 2024

AbstractEvaluation of genotypes to identify high-yielding and stable varieties is crucial for chilli production sustainability and food security. These analyses are essential, particularly when the breeding program aims to select lines with great adaptability and stability. Thirty chilli genotypes were evaluated for yield stability under four soilless planting systems viz; fertigation, HydroStock (commercial hydrogel), BioHydrogel (biodegradable hydrogel), and hydroponic to study the influence of genotype by environment interaction. The research used a split-plot randomized complete block design (RCBD) with two cropping cycles and five replications. The GGE biplot analysis was employed to assess the mean versus stability perspective in explaining the variation in genotypic and genotype-by-environment effects on the yield-related attributes for yield per plant, fruit number, fruit length, and width. Stability analysis denoted genotypes G26 and G30 as the most stable for yield per plant, while G16, G22, and G30 were stable for the number of fruits per plant. Among the four planting systems evaluated, HydroStock and BioHydrogel outperformed the others in yield per plant, demonstrating the highest level of informativeness or discrimination. These findings offer critical insights for future crop breeding programs and the optimization of agricultural practices.
Exploring the mechanism and phytochemicals in Psoraleae Fructus-induced hepatotoxicity based on RNA-seq, in vitro screening and molecular docking
Authors: Shang Huiying , Liu Xian , Pan Jinchao , Cheng Hongbo , Ma Zengchun , Xiao Chengrong , Gao Yue 
Published: January 2024

AbstractPsoraleae Fructus (PF) is a widely-used herb with diverse pharmacological activities, while its related hepatic injuries have aroused public concerns. In this work, a systematic approach based on RNA sequencing (RNA-seq), high-content screening (HCS) and molecular docking was developed to investigate the potential mechanism and identify major phytochemicals contributed to PF-induced hepatotoxicity. Animal experiments proved oral administration of PF water extracts disturbed lipid metabolism and promoted hepatic injuries by suppressing fatty acid and cholesterol catabolism. RNA-seq combined with KEGG enrichment analysis identified mitochondrial oxidative phosphorylation (OXPHOS) as the potential key pathway. Further experiments validated PF caused mitochondrial structure damage, mtDNA depletion and inhibited expressions of genes engaged in OXPHOS. By detecting mitochondrial membrane potential and mitochondrial superoxide, HCS identified bavachin, isobavachalcone, bakuchiol and psoralidin as most potent mitotoxic compounds in PF. Moreover, molecular docking confirmed the potential binding patterns and strong binding affinity of the critical compounds with mitochondrial respiratory complex. This study unveiled the underlying mechanism and phytochemicals in PF-induced liver injuries from the view of mitochondrial dysfunction.
Residual Complex I activity and amphidirectional Complex II operation support glutamate catabolism through mtSLP in anoxia
Authors: Ravasz Dora , Bui David , Nazarian Sara , Pallag Gergely , Karnok Noemi , Roberts Jennie , Marzullo Bryan P. , Tennant Daniel A. , Greenwood Bennett , Kitayev Alex , Hill Collin , Komlódi Timea , Doerrier Carolina , Cunatova Kristyna , Fernandez-Vizarra Erika , Gnaiger Erich , Kiebish Michael A. , Raska Alexandra , Kolev Krasimir , Czumbel Bence , Narain Niven R. , Seyfried Thomas N. , Chinopoulos Christos 
Published: January 2024

AbstractAnoxia halts oxidative phosphorylation (OXPHOS) causing an accumulation of reduced compounds in the mitochondrial matrix which impedes dehydrogenases. By simultaneously measuring oxygen concentration, NADH autofluorescence, mitochondrial membrane potential and ubiquinone reduction extent in isolated mitochondria in real-time, we demonstrate that Complex I utilized endogenous quinones to oxidize NADH under acute anoxia. 13C metabolic tracing or untargeted analysis of metabolites extracted during anoxia in the presence or absence of site-specific inhibitors of the electron transfer system showed that NAD+ regenerated by Complex I is reduced by the 2-oxoglutarate dehydrogenase Complex yielding succinyl-CoA supporting mitochondrial substrate-level phosphorylation (mtSLP), releasing succinate. Complex II operated amphidirectionally during the anoxic event, providing quinones to Complex I and reducing fumarate to succinate. Our results highlight the importance of quinone provision to Complex I oxidizing NADH maintaining glutamate catabolism and mtSLP in the absence of OXPHOS.
Object geometry serves humans’ intuitive physics of stability
Authors: Liu Yaxin , Ayzenberg Vladislav , Lourenco Stella F. 
Published: January 2024

AbstractHow do humans judge physical stability? A prevalent account emphasizes the mental simulation of physical events implemented by an intuitive physics engine in the mind. Here we test the extent to which the perceptual features of object geometry are sufficient for supporting judgments of falling direction. In all experiments, adults and children judged the falling direction of a tilted object and, across experiments, objects differed in the geometric features (i.e., geometric centroid, object height, base size and/or aspect ratio) relevant to the judgment. Participants’ performance was compared to computational models trained on geometric features, as well as a deep convolutional neural network (ResNet-50), none of which incorporated mental simulation. Adult and child participants’ performance was well fit by models of object geometry, particularly the geometric centroid. ResNet-50 also provided a good account of human performance. Altogether, our findings suggest that object geometry may be sufficient for judging the falling direction of tilted objects, independent of mental simulation.
Longitudinal changes in resting state fMRI brain self-similarity of asymptomatic high school American football athletes
Authors: Fitzgerald Bradley , Bari Sumra , Vike Nicole , Lee Taylor A. , Lycke Roy J. , Auger Joshua D. , Leverenz Larry J. , Nauman Eric , Goñi Joaquín , Talavage Thomas M. 
Published: January 2024

AbstractAmerican football has become the focus of numerous studies highlighting a growing concern that cumulative exposure to repetitive, sports-related head acceleration events (HAEs) may have negative consequences for brain health, even in the absence of a diagnosed concussion. In this longitudinal study, brain functional connectivity was analyzed in a cohort of high school American football athletes over a single play season and compared against participants in non-collision high school sports. Football athletes underwent four resting-state functional magnetic resonance imaging sessions: once before (pre-season), twice during (in-season), and once 34–80 days after the contact activities play season ended (post-season). For each imaging session, functional connectomes (FCs) were computed for each athlete and compared across sessions using a metric reflecting the (self) similarity between two FCs. HAEs were monitored during all practices and games throughout the season using head-mounted sensors. Relative to the pre-season scan session, football athletes exhibited decreased FC self-similarity at the later in-season session, with apparent recovery of self-similarity by the time of the post-season session. In addition, both within and post-season self-similarity was correlated with cumulative exposure to head acceleration events. These results suggest that repetitive exposure to HAEs produces alterations in functional brain connectivity and highlight the necessity of collision-free recovery periods for football athletes.