bluuebunny/crossref_metadata_2025_split huggingface dataset:
Herbivorous sea urchins (Echinometra mathaei) support resilience on overfished and sedimented tropical reefs
Authors: Fong Caitlin R. , Smith Nefertiti , Catalan Elijah , Caraveo Blanca Alvarez , Barber Paul H. , Fong Peggy 
Published: February 2024

AbstractHuman impacts are dramatically changing ecological communities, motivating research on resilience. Tropical reefs are increasingly undergoing transitions to short algal turf, a successional community that mediates either recovery to coral by allowing recruitment or transitions to longer turf/macroalgae. Intense herbivory limits turf height; subsequently, overfishing erodes resilience of the desirable coral-dominated reef state. Increased sedimentation also erodes resilience through smothering and herbivory suppression. In spite of this critical role, most herbivory studies on tropical reefs focus on fishes, and the contribution of urchins remains under-studied. To test how different herbivory and sedimentation scenarios impact turf resilience, we experimentally simulated, in situ, four future overfishing scenarios derived from patterns of fish and urchin loss in other reef systems and two future sedimentation regimes. We found urchins were critical to short turf resilience, maintaining this state even with reduced fish herbivory and increased sediment. Further, urchins cleared sediment, facilitating fish herbivory. This study articulates the likelihood of increased reliance on urchins on impacted reefs in the Anthropocene.
The phylogeographic journey of a plant species from lowland to highlands during the Pleistocene
Authors: Soares Luana Sousa , Freitas Loreta B. 
Published: February 2024

AbstractPhylogeographic history refers to how species evolve and diversify in response to historical, ecological, and demographic factors. The climate fluctuation during the Pleistocene period marked a crucial time in shaping many species’ distribution and genetic structure, particularly those from southern South American grasslands. This work investigated the phylogeographic history of a highland grassland, Petunia altiplana T. Ando & Hashim. (Solanaceae), its diversity, and geographic distribution using a population genomic approach based on RAD-seq data. Our results indicated that, during the Pleistocene, when the grasslands expanded to highlands, the lowland populations of P. altiplana reached the higher open fields, enlarging their geographic distribution. We found that the P. altiplana genetic diversity followed the geographic division into eastern (E) and western (WE) population groups, with a subtle division in the E group regarding the Pelotas River headwater. The results also showed that isolation by distance was the main divergence pattern, with elevation playing a pivotal role in shaping WE and E groups. Our findings indicated that lowland-adapted populations quickly colonized highlands during the late Pleistocene.
Coherent control of two Jaynes–Cummings cavities
Authors: Castaños-Cervantes L. O. , Procopio Lorenzo M. , Enríquez Marco 
Published: February 2024

AbstractWe uncover new features on the study of a two-level atom interacting with one of two cavities in a coherent superposition. The Jaynes-Cummings model is used to describe the atom–field interaction and to study the effects of quantum indefiniteness on such an interaction. We show that coherent control of the two cavities in an undefined manner allows novel possibilities to manipulate the atomic dynamics on demand which are not achievable in the conventional way. In addition, it is shown that the coherent control of the atom creates highly entangled states of the cavity fields taking a Bell-like or Schrödinger-cat-like state form. Our results are a step forward to understand and harness quantum systems in a coherent control, and open a new research avenue in the study of atom–field interaction exploiting quantum indefiniteness.
Synthesis of 2D layered transition metal (Ni, Co) hydroxides via edge-on condensation
Authors: Ping Lu , Minarik Gillian E. , Gao Hongze , Cao Jun , Li Tianshu , Kitadai Hikari , Ling Xi 
Published: February 2024

AbstractLayered transition metal hydroxides (LTMHs) with transition metal centers sandwiched between layers of coordinating hydroxide anions have attracted considerable interest for their potential in developing clean energy sources and storage technologies. However, two-dimensional (2D) LTMHs remain largely understudied in terms of physical properties and applications in electronic devices. Here, for the first time we report > 20 μm α-Ni(OH)2 2D crystals, synthesized from hydrothermal reaction. And an edge-on condensation mechanism assisted with the crystal field geometry is proposed to understand the 2D intra-planar growth of the crystals, which is also testified through series of systematic comparative studies. We also report the successful synthesis of 2D Co(OH)2 crystals (> 40 μm) with more irregular shape due to the slightly distorted octahedral geometry of the crystal field. Moreover, the detailed structural characterization of synthesized α-Ni(OH)2 are performed. The optical band gap energy is extrapolated as 2.54 eV from optical absorption measurements and the electronic bandgap is measured as 2.52 eV from reflected electrons energy loss spectroscopy (REELS). We further demonstrate its potential as a wide bandgap (WBG) semiconductor for high voltage operation in 2D electronics with a high breakdown strength, 4.77 MV/cm with 4.9 nm thickness. The successful realization of the 2D LTMHs opens the door for future exploration of more fundamental physical properties and device applications.
Environmental and mineralogical studies on the stream sediments of Baltim–El Burullus coastal plain, North Delta, Egypt
Authors: Sallam A. M. , Faheim A. A. , El-Elshafiey Z. A. , Azeem M. M. Abdel , El Feky M. G. , Hanfi M. Y. 
Published: February 2024

AbstractThis work is mainly concerned with the effect of anthropogenic activities and natural radioactivity due to the presence of highly radioactive black sand spots, factory construction, and shipping, in addition to other activities like agriculture on human beings. Forty samples were collected along Baltim–El Burullus coastal plain to detect the effect of these problems and determine the suggested solutions. The black sand of the Baltim–El Burullus coastal plain exhibits a considerable amount of economically heavy minerals, their ratio relative to the bulk composition in the investigated samples ranges from 3.18 to 10.5% with an average of 5.45%. The most important of them are magnetite, ilmenite, rutile, leucoxene, garnet, zircon and monazite. The existence of some radioactive-bearing accessory mineral deposits like zircon and monazite led to measuring the naturally occurring radionuclides 226Ra, 232Th and 40K to evaluate the excess lifetime cancer risk (ELCR). The results showed that these concentrations are 19.1 ± 9.73, 14.7 ± 9.53 and 211 ± 71.34 Bq kg−1 were lower than the corresponding reported worldwide average of 35, 45, and 412 Bq kg−1 for each radionuclide (226Ra, 232Th, and 40 K). The gamma hazard indices such as absorbed dose rate (Dair), the annual effective dose (AED), and excess lifetime cancer risk (ELCR) factor were computed in the investigated sediments and all the results were found (Dair = 26.4 nGy h−1, AED = 0.03 mSv year−1, ELCR = 0.0001) to be lower than the values suggested by the United Nations Scientific Committee on the effect of Atomic Research (59 nGy h−1, 0.07 mSv year−1 and 0.0029 for Dair, AED and ELCR, respectively). The study suggests that the black sand is safe to use in various infrastructure applications at Baltim–El Burullus coastal plain. The levels of radioactivity are not high enough to pose a risk to human health.
Ocean warming events resilience capability in underwater computing platforms
Authors: Periola A. A. , Alonge A. A. , Ogudo K. A. 
Published: February 2024

AbstractUnderwater data centers (UDCs) use the ocean’s cold-water resources for free cooling and have low cooling costs. However, UDC cooling is affected by marine heat waves, and underwater seismic events thereby affecting UDC functioning continuity. Though feasible, the use of reservoirs for UDC cooling is non–scalable due to the high computing overhead, and inability to support continuity for long duration marine heat waves. The presented research proposes a mobile UDC (capable of migration) to address this challenge. The proposed UDC migrates from high underwater ground displacement ocean regions to regions having no or small underwater ground displacement. It supports multiple client underwater applications without requiring clients to develop, deploy, and launch own UDCs. The manner of resource utilization is influenced by the client’s service level agreement. Hence, the proposed UDC provides resilient services to the clients and the requiring applications. Analysis shows that using the mobile UDC instead of the existing reservoir UDC approach enhances the operational duration and power usage effectiveness by 8.9–48.5% and 55.6–70.7% on average, respectively. In addition, the overhead is reduced by an average of 95.8–99.4%.
Association of physical functional activity impairment with severity of sarcopenic obesity: findings from National Health and Nutrition Examination Survey
Authors: Huang Shih-Wei , Lee Yu-Hao , Liao Chun-De , Escorpizo Reuben , Liou Tsan-Hon , Lin Hui-Wen 
Published: February 2024

AbstractWe aim to clarify the relationship between low skeletal muscle mass and varying levels of adiposity and to identify the types of physical function impairments associated with sarcopenic obesity (SO). This study examined cross-sectional data from the National Health and Nutrition Examination Survey with whole-body dual-energy X-ray absorptiometry (DXA) scans. The data included age, gender, DXA-assessed body composition, and physical functional activity with performing daily tasks by questionnaire. We subdivided the data by body composition into a non-SO group and a SO group (ASMI 0–49.99% and FMI of 50–100%), after which the SO data were subdivided into three classes. A higher class indicated higher adiposity and lower muscle mass. The physical function impairment of the two groups was compared. Our study examined 7161 individuals, of which 4907 did not have SO and 2254 had SO, and their data were further divided into three classes (i.e., class I, 826 individuals; class II, 1300 individuals; and class III, 128 individuals). Significant differences in demographics and DXA parameters were identified between the non-SO and SO groups (P < 0.001); the individuals with SO were older, included more women, and exhibited high adiposity and less lean muscle mass. The individuals with class III SO exhibited greater differences and reported more difficulty in performing daily activities. The individuals with class III SO exhibited the most severe physical function impairment. Our study highlights the considerable difficulties encountered by individuals with SO in performing daily activities. Given this finding, customized rehabilitation strategies should be implemented to improve the quality of life of individuals with SO.
Identification of immunogenic cell death-related genes involved in Alzheimer’s disease
Authors: Wang Rui , Du Yaming , Shao Wei , Wang Junli , Liu Xin , Xu Xinzi , Chen Guohua , Sun Yixuan 
Published: February 2024

AbstractAlzheimer's disease (AD) is the leading cause of dementia worldwide, with recent studies highlighting the potential role of immunogenic cell death (ICD) in the pathogenesis of this neurodegenerative disorder. A total of 52 healthy controls and 64 patients with AD were included. Compared to the controls, the patients with AD exhibited 2392 differentially expressed genes (DEGs), of which 1015 and 1377 were upregulated and downregulated genes, respectively. Among them, nine common genes were identified by intersecting the AD-related module genes with the DEGs and ICD-associated genes. Gene ontology (GO)analysis further revealed “positive regulation of cytokine production” as the most significant term. Moreover, the enriched molecular functions were primarily related to the inflammatory body complex, while the overlapping genes were significantly enriched in lipopolysaccharide binding. Kyoto encyclopedia of genes and genomes (KEGG) analysis also indicated that these overlapping genes were mainly enriched in immunity, inflammation, and lipid metabolism pathways. Furthermore, the following four hub genes were detected using machine learning algorithms: P2RX7, HSP90AA1, NT5E, and NLRP3. These genes demonstrated significant differences in expression between the AD and healthy control groups (P < 0.05). Additionally, the area under the curve values of these four genes were all > 0.7, indicating their potential diagnostic value for AD. We further validated the protein levels of these four genes in the hippocampus of 3xTg-AD and C57BL/6J mice, showing P2RX7 and HSP90AA1 expression levels consistent with the previously analyzed trends. Finally, the single-sample gene set enrichment analysis (ssGSEA) algorithm provided additional evidence by demonstrating the crucial role of immune cell infiltration and its link with the hub genes in AD progression. Our study results suggest that ICD-mediated elevation of HSP90AA1 and P2RX7 levels and the resulting induction of tau hyperphosphorylation and neuroinflammation are vital in the AD pathogenic mechanism.
Graph neural network recommendation algorithm based on improved dual tower model
Authors: He Qiang , Li Xinkai , Cai Biao 
Published: February 2024

AbstractIn this era of information explosion, recommendation systems play a key role in helping users to uncover content of interest among massive amounts of information. Pursuing a breadth of recall while maintaining accuracy is a core challenge for current recommendation systems. In this paper, we propose a new recommendation algorithm model, the interactive higher-order dual tower (IHDT), which improves current models by adding interactivity and higher-order feature learning between the dual tower neural networks. A heterogeneous graph is constructed containing different types of nodes, such as users, items, and attributes, extracting richer feature representations through meta-paths. To achieve feature interaction, an interactive learning mechanism is introduced to inject relevant features between the user and project towers. Additionally, this method utilizes graph convolutional networks for higher-order feature learning, pooling the node embeddings of the twin towers to obtain enhanced end-user and item representations. IHDT was evaluated on the MovieLens dataset and outperformed multiple baseline methods. Ablation experiments verified the contribution of interactive learning and high-order GCN components.
The chemical succession in anoxic lake waters as source of molecular diversity of organic matter
Authors: Lau Maximilian P. , Hutchins Ryan H. S. , Tank Suzanne E. , A. del Giorgio Paul 
Published: February 2024

AbstractThe aquatic networks that connect soils with oceans receive each year 5.1 Pg of terrestrial carbon to transport, bury and process. Stagnant sections of aquatic networks often become anoxic. Mineral surfaces attract specific components of organic carbon, which are released under anoxic conditions to the pool of dissolved organic matter (DOM). The impact of the anoxic release on DOM molecular composition and reactivity in inland waters is unknown. Here, we report concurrent release of iron and DOM in anoxic bottom waters of northern lakes, removing DOM from the protection of iron oxides and remobilizing previously buried carbon to the water column. The deprotected DOM appears to be highly reactive, terrestrially derived and molecularly distinct, generating an ambient DOM pool that relieves energetic constraints that are often assumed to limit carbon turnover in anoxic waters. The Fe-to-C stoichiometry during anoxic mobilization differs from that after oxic precipitation, suggesting that up to 21% of buried OM escapes a lake-internal release-precipitation cycle, and can instead be exported downstream. Although anoxic habitats are transient and comprise relatively small volumes of water on the landscape scale, our results show that they may play a major role in structuring the reactivity and molecular composition of DOM transiting through aquatic networks and reaching the oceans.
Inferring position of motor units from high-density surface EMG
Authors: Lundsberg Jonathan , Björkman Anders , Malesevic Nebojsa , Antfolk Christian 
Published: February 2024

AbstractThe spatial distribution of muscle fibre activity is of interest in guiding therapy and assessing recovery of motor function following injuries of the peripheral or central nervous system. This paper presents a new method for stable estimation of motor unit territory centres from high-density surface electromyography (HDsEMG). This completely automatic process applies principal component compression and a rotatable Gaussian surface fit to motor unit action potential (MUAP) distributions to map the spatial distribution of motor unit activity. Each estimated position corresponds to the signal centre of the motor unit territory. Two subjects were used to test the method on forearm muscles, using two different approaches. With the first dataset, motor units were identified by decomposition of intramuscular EMG and the centre position of each motor unit territory was estimated from synchronized HDsEMG data. These positions were compared to the positions of the intramuscular fine wire electrodes with depth measured using ultrasound. With the second dataset, decomposition and motor unit localization was done directly on HDsEMG data, during specific muscle contractions. From the first dataset, the mean estimated depth of the motor unit centres were 8.7, 11.6, and 9.1 mm, with standard deviations 0.5, 0.1, and 1.3 mm, and the respective depths of the fine wire electrodes were 8.4, 15.8, and 9.1 mm. The second dataset generated distinct spatial distributions of motor unit activity which were used to identify the regions of different muscles of the forearm, in a 3-dimensional and projected 2-dimensional view. In conclusion, a method is presented which estimates motor unit centre positions from HDsEMG. The study demonstrates the shifting spatial distribution of muscle fibre activity between different efforts, which could be used to assess individual muscles on a motor unit level.
Calcitriol promotes M2 polarization of tumor-associated macrophages in 4T1 mouse mammary gland cancer via the induction of proinflammatory cytokines
Authors: Stachowicz-Suhs Martyna , Łabędź Natalia , Anisiewicz Artur , Banach Joanna , Kłopotowska Dagmara , Milczarek Magdalena , Piotrowska Aleksandra , Dzięgiel Piotr , Maciejczyk Adam , Matkowski Rafał , Wietrzyk Joanna 
Published: February 2024

AbstractOur research found that vitamin D3 (VD3) treatment increased lung metastasis in mice with 4T1 murine breast cancer (BC). This study aims to investigate the impact of VD3 on the activation of tumor-associated macrophages (TAMs) in BC. Mice bearing 4T1, E0771, 67NR BC cells, and healthy mice, were fed diets with varying VD3 contents (100—deficient, 1000—normal, and 5000 IU/kg—elevated). Some mice in the 1000 and 100 IU/kg groups received calcitriol. We studied bone metastasis and characterized TAMs and bone marrow-derived macrophages (BMDMs). 4T1 cells had higher bone metastasis potential in the 5000 IU/kg and calcitriol groups. In the same mice, an elevated tumor osteopontin level and M2 polarization of TAMs (MHCIIlow CD44high phenotype) were observed. Gene expression analysis confirmed M2 polarization of 4T1 (but not 67NR) TAMs and BMDMs, particularly in the 100 IU + cal group (increased Mrc1, Il23, and Il6). This polarization was likely due to COX-2/PGE2 induction in 4T1 calcitriol-treated cells, leading to increased proinflammatory cytokines like IL-6 and IL-23. Future studies will explore COX-2/PGE2 as a primary mediator of calcitriol-stimulated inflammation in the BC microenvironment, especially relevant for BC patients with VD3 deficiency and supplementation.
Widespread and increasing near-bottom hypoxia in the coastal ocean off the United States Pacific Northwest
Authors: Barth John A. , Pierce Stephen D. , Carter Brendan R. , Chan Francis , Erofeev Anatoli Y. , Fisher Jennifer L. , Feely Richard A. , Jacobson Kym C. , Keller Aimee A. , Morgan Cheryl A. , Pohl John E. , Rasmuson Leif K. , Simon Victor 
Published: February 2024

AbstractThe 2021 summer upwelling season off the United States Pacific Northwest coast was unusually strong leading to widespread near-bottom, low-oxygen waters. During summer 2021, an unprecedented number of ship- and underwater glider-based measurements of dissolved oxygen were made in this region. Near-bottom hypoxia, that is dissolved oxygen less than 61 µmol kg−1and harmful to marine animals, was observed over nearly half of the continental shelf inshore of the 200-m isobath, covering 15,500 square kilometers. A mid-shelf ribbon with near-bottom, dissolved oxygen less than 50 µmol kg−1extended for 450 km off north-central Oregon and Washington. Spatial patterns in near-bottom oxygen are related to the continental shelf width and other features of the region. Maps of near-bottom oxygen since 1950 show a consistent trend toward lower oxygen levels over time. The fraction of near-bottom water inshore of the 200-m isobath that is hypoxic on average during the summer upwelling season increases over time from nearly absent (2%) in 1950–1980, to 24% in 2009–2018, compared with 56% during the anomalously strong upwelling conditions in 2021. Widespread and increasing near-bottom hypoxia is consistent with increased upwelling-favorable wind forcing under climate change.
Intra-articular injection of ascorbic acid enhances microfracture-mediated cartilage repair
Authors: Chen Zhian , Zhang Sihe , Duan Peiya , Yin Zhengbo , Dong Shuangbin , Pang Rongqing , Tan Hongbo 
Published: February 2024

AbstractPrevious studies have confirmed that ascorbic acid (AA) can promote cartilage repair and improve cartilage differentiation in bone marrow mesenchymal stem cells. However, the use of microfracture (MFX) combined with AA to repair cartilage damage has not been studied. This study established a rabbit animal model and treated cartilage injury with different concentrations of AA combined with MFX. Macroscopic observations, histological analysis, immunohistochemical analysis and reverse transcription quantitative polymerase chain reaction analysis of TGF-β, AKT/Nrf2, and VEGF mRNA expression were performed. The results showed that intra-articular injection of AA had a positive effect on cartilage repair mediated by microfractures. Moreover, 10 mg/ml AA was the most effective at promoting cartilage repair mediated by microfractures. Intra-articular injection of AA promoted the synthesis of type II collagen and the formation of glycosaminoglycans by downregulating the mRNA expression of TGF-β and VEGF. In summary, this study confirmed that AA could promote cartilage repair after MFX surgery.