bluuebunny/crossref_metadata_2025_split huggingface dataset:
Bismuth tellurides and sulphosalts from the Larga hydrothermal system, Metaliferi Mts , Romania: Paragenesis and genetic significance
Authors: Cook N. J. , Ciobanu C. L. 
Published: August 2004

AbstractIntermediate levels of the Larga-Fatţa Báii field, Metaliferi Mts., Romania, are host to epithermal vein mineralization, small skarn-like bodies and ‘geode’-like replacement ores, that together form a complex hydrothermal system rooted in the subjacent andesite stock. Silver-Pb-Bi sulphosalts, some with Sb and/or Se, are intimately associated with hessite and a range of Bi-tellurides with Bi/(Te+S+Se) ≤1 (tetradymite, tellurobismuthite, tsumoite, Pb-free rucklidgeite) within all these ore types. Lillianite homologues, both ordered 4L and 7L derivatives (lillianite, gustavite), and disordered varieties are the most abundant sulphosalts, with subordinate bismuthinite derivatives (aikinite, krupkaite, bismuthinite). An exceptionally Ag-rich lillianite homologue, intimately intergrown with tetradymite and hessite, is identified as treasureite on the basis of chemical composition. Porphyry-style mineralization from 600 m beneath the studied level contains rucklidgeite as the single stable Bi-telluride. The trace mineralogy of the system is suggestive of a hydrothermal system strongly zoned with respect to fTe2 and, to a lesser extent, also fS2. Mineralogical and textural evidence suggests that initial crystallization took place at temperatures in excess of 400°C. The association of gold with Bi-minerals is linked to the role of Bimelt as a scavenger for gold, and deposition within ‘droplets’ simultaneous with the formation of arsenopyrite from löllingite + pyrrhotite. Both Bi-tellurosulphides and sulphosalts are commonly non-stoichiometric, a fact that can be correlated with order-disorder in both series. When widely distributed, as in the Larga system, trace amounts of Bi-minerals (sulphosalts, tellurides/tellurosulphides) have considerable, untapped potential as tracers of the physical-chemical character of an evolving hydrothermal system.
Multispectral imaging of ore minerals in optical microscopy
Authors: Pirard E. 
Published: August 2004

AbstractMultispectral imaging of ore minerals under the microscope is a logical extension of quantitative colour analysis and microspectrophotometric analysis of minerals. This paper describes, step by step, how the proper calibration of a scientific video camera can be performed in order to obtain precise reflectance measurements at each pixel within the field of view. After having reviewed the different sources of noise and aberration, practical formulae are presented that allow for the acquisition of a set of images at different wavelengths in the visible spectrum.The advantage of using a multispectral image acquisition system based on narrow bandwidth (10 nm) interference filters is discussed and quantitatively compared to colour imaging using tristimulus (red, green, blue) filters.Images taken from major sulphide parageneses are shown as examples of well contrasted multispectral images. Finally, the potential for automatic identification of ore minerals is discussed with reference to supervised multivariate image classification algorithms similar to those used in remote sensing. Additional comments on extending the principles for handling optical anisotropy and developing a multiradial imaging system are made.
Stabilization of trivalent Mn in natural tetragonal hydrogarnets on the join ‘hydrogrossular’—henritermierite, Ca3Mn23+ [SiO4]2[H4O4]
Authors: Hålenius U. 
Published: August 2004

AbstractFour relatively intense and broad absorption bands centred at ∼12500, ∼19500, ∼21500 and ∼23000 cm–1 were recorded in polarized electronic single-crystal spectra of natural, optically uniaxial and pleochroic hydrogarnets with henritermierite contents ranging from 35 to 97 mol.%. These absorption bands arise from spin-allowed electronic d-d transitions in trivalent Mn located at the axially distorted six-coordinated site of the tetragonal hydrogarnet structure.The crystal field stabilization energy (CFSE) for trivalent Mn at the Mn site, as derived from band energies, is ∼185 kJ/mol. This considerably higher CFSE for Mn3+ in tetragonal hydrogarnets as compared to cubic garnets (130 –145 kJ/mol) explains the natural occurrence of close to end-member tetragonal Mn3+-hydrogarnets while only limited Mn3+-substitution is observed in natural cubic garnets.The fact that incorporation of Mn3+ at intermediate concentrations stabilizes the tetragonal hydrogarnets indicates the potential natural existence of a number of new, partially Mn3+-substituted, hydrogarnets, e.g. tetragonal Mn3+-bearing ‘hydroandradite’.
Origin of placer laurite from Borneo: Se and As contents, and S isotopic compositions
Authors: Hattori K. H. , Cabri L. J. , Johanson B. , Zientek M. L. 
Published: August 2004

AbstractWe examined grains of the platinum-group mineral, laurite (RuS2), from the type locality, Pontyn River, Tanah Laut, Borneo, and from the Tambanio River, southeast Borneo. The grains show a variety of morphologies, including euhedral grains with conchoidal fractures and pits, and spherical grains with no crystal faces, probably because of abrasion. Inclusions are rare, but one grain contains Ca-Al amphibole inclusions, and another contains an inclusion of chalcopyrite+bornite+pentlandite+heazlewoodite (Ni3S2) that is considered to have formed by a two-stage process of exsolution and crystallization from a once homogeneous Fe-Cu-Ni sulphide melt.All grains examined are solid solutions of Ru and Os with Ir (2.71 –11.76 wt.%) and Pd (0.31–0.66 wt.%). Their compositions are similar to laurite from ophiolitic rocks. The compositions show broad negative correlations between Os and Ir, between As and Ir, and between As (0.4 –0.74 wt.%) and Se (140 to 240 ppm). Laurite with higher Os contains more Se and less Ir and As. The negative correlations between Se and As may be attributed to their occupancy of the S site, but the compositional variations of Os, Ir and As probably reflect the compositional variation of rocks where the crystals grew.Ratios of S/Se in laurite show a narrow spread from 1380 to 2300, which are similar to ratios for sulphides from the refractory sub-arc mantle. Sulphur isotopic compositions of laurite are independent of chemical compositions and morphologies and are similar to the chondritic value of 0%. The data suggest that S in laurite has not undergone redox changes and originated from the refractory mantle. The data support the formation of laurite in the residual mantle or in a magma generated from such a refractory mantle, followed by erosion after the obduction of the host ultramafic rocks.
‘Irite’ (Hermann, 1836/1841) from the Urals
Authors: Jedwab J. 
Published: August 2004

AbstractA reappraisal of Hermann's ‘irite’, described in 1836 and 1841, has been attempted by examining and analysing three museum samples, accessioned before 1865. The three samples were determined to be mixtures of chromite, native Os and Ir, rutheniridosmine, platinum, laurite, hongshiite, irarsite, cuprorhodsite, iridsite, prassoite, hollingworthite, erlichmannite, several Ru-Ir-Pt-Ti-Cr-Fe oxide/ hydroxide compounds (sometimes well crystallized), Pt-Ir-K chlorocompounds, and Pt-Ir-Ru-K-Clcontaining opal. The latter two are considered as artifacts generated by the hydrometallurgical processes applied to the crude platinum ores. Individual particles of native iridium and osmium display baroque crystal habits (filaments, leafs, blades, hollow crystals) that could be their natural, although rarely observed, states. There is still doubt about the origin (either natural or artificial) of all Ru-Ir-Pt- Ti-Cr-Fe oxides, but they can be compared with those found in several pristine placer and hard-rock deposits worldwide and in the Urals.
Platinum-group element mineralization in an As-rich magmatic sulphide system, Talnotry, southwest Scotland
Authors: Power M. R. , Pirrie D. , Jedwab J. , Stanley C. J. 
Published: August 2004

AbstractArsenic-rich magmatic sulphide mineralization is hosted by a diorite intrusion at Talnotry, southwest Scotland. A relatively abundant and diverse platinum-group mineral assemblage is present and is dominated by sperrylite, irarsite and electrum with subordinate merenskyite, michenerite and froodite. Early euhedral gersdorffite is enriched with respect to Rh, Ir and Pt and in some cases contains exsolved blebs of irarsite or euhedral grains of sperrylite. Sperrylite is also enclosed within silicates and sulphides indicating that it crystallized directly from an As-rich sulphide liquid. Pyrrhotite-chalcopyrite mineral assemblages are consistent with the fractional crystallization of monosulphide solid solution and are overlain by PGE-, Ni- and As-rich mineral assemblages indicative of crystallization from a NiAs liquid. Late-stage, cross-cutting, electrum-bearing chalcopyrite veins are consistent with the crystallization of Cu- and Au-rich intermediate solid solution. The chemistry, mineralogy and lithological relationships of the diorite suggest that it may be an appinite and as such is potentially analogous to the Au-rich lamprophyre dykes present within southwest Scotland.
An imaging system for standardized quantitative analysis of C. elegans behavior
Authors: Feng Zhaoyang , Cronin Christopher J , Wittig John H , Sternberg Paul W , Schafer William R 
Published: August 2004

Abstract
Background
The nematode Caenorhabditis elegans is widely used for the genetic analysis of neuronal cell biology, development, and behavior. Because traditional methods for evaluating behavioral phenotypes are qualitative and imprecise, there is a need for tools that allow quantitation and standardization of C. elegans behavioral assays.

Results
Here we describe a tracking and imaging system for the automated analysis of C. elegans morphology and behavior. Using this system, it is possible to record the behavior of individual nematodes over long time periods and quantify 144 specific phenotypic parameters.

Conclusions
These tools for phenotypic analysis will provide reliable, comprehensive scoring of a wide range of behavioral abnormalities, and will make it possible to standardize assays such that behavioral data from different labs can readily be compared. In addition, this system will facilitate high-throughput collection of phenotypic data that can ultimately be used to generate a comprehensive database of C. elegans phenotypic information.

Availability
The hardware configuration and software for the system are available from wschafer@ucsd.edu.
Expression profiling of serum inducible genes identifies a subset of SRF target genes that are MKL dependent
Authors: Selvaraj Ahalya , Prywes Ron 
Published: August 2004

Abstract
Background
Serum Response Factor (SRF) is a transcription factor that is required for the expression of many genes including immediate early genes, cytoskeletal genes, and muscle-specific genes. SRF is activated in response to extra-cellular signals by its association with a diverse set of co-activators in different cell types. In the case of the ubiquitously expressed immediate early genes, the two sets of SRF binding proteins that regulate its activity are the TCF family of proteins that include Elk1, SAP1 and SAP2 and the myocardin-related MKL family of proteins that include MKL1 and MKL2 (also known as MAL, MRTF-A and -B and BSAC). In response to serum or growth factors these two classes of co-activators are activated by different upstream signal transduction pathways. However, it is not clear how they differentially activate SRF target genes.

Results
In order to identify the serum-inducible SRF target genes that are specifically dependent on the MKL pathway, we have performed microarray experiments using a cell line that expresses dominant negative MKL1. This approach was used to identify SRF target genes whose activation is MKL-dependent. Twenty-eight of 150 serum-inducible genes were found to be MKL-dependent. The promoters of the serum-inducible genes were analyzed for SRF binding sites and other common regulatory elements. Putative SRF binding sites were found at a higher rate than in a mouse promoter database but were only identified in 12% of the serum-inducible promoters analyzed. Additional partial matches to the consensus SRF binding site were found at a higher than expected rate in the MKL-dependent gene promoters. The analysis for other common regulatory elements is discussed.

Conclusions
These results suggest that a subset of immediate early and SRF target genes are activated by the Rho-MKL pathway. MKL may also contribute to the induction of other SRF target genes however its role is not essential, possibly due to other activation mechanisms such as MAPK phosphorylation of TCFs.
Sequence periodicity of Escherichia coli is concentrated in intergenic regions
Authors: Hosid Sergey , Trifonov Edward N , Bolshoy Alexander 
Published: August 2004

Abstract
Background
Sequence periodicity with a period close to the DNA helical repeat is a very basic genomic property. This genomic feature was demonstrated for many prokaryotic genomes. The Escherichia coli sequences display the period close to 11 base pairs.

Results
Here we demonstrate that practically only ApA/TpT dinucleotides contribute to overall dinucleotide periodicity in Escherichia coli. The noncoding sequences reveal this periodicity much more prominently compared to protein-coding sequences. The sequence periodicity of ApC/GpT, ApT and GpC dinucleotides along the Escherichia coli K-12 is found to be located as well mainly within the intergenic regions.

Conclusions
The observed concentration of the dinucleotide sequence periodicity in the intergenic regions of E. coli suggests that the periodicity is a typical property of prokaryotic intergenic regions. We suppose that this preferential distribution of dinucleotide periodicity serves many biological functions; first of all, the regulation of transcription.
Effect of green tea on blood glucose levels and serum proteomic patterns in diabetic (db/db) mice and on glucose metabolism in healthy humans
Authors: Tsuneki Hiroshi , Ishizuka Mitsuyo , Terasawa Miki , Wu Jin-Bin , Sasaoka Toshiyasu , Kimura Ikuko 
Published: August 2004

Abstract
Background
Green tea is widely consumed in Asian countries and is becoming increasingly popular in Western countries. Epidemiologically, it has been suggested that green tea consumption prevents type 2 diabetes. The present study was aimed at providing evidence of improvement in glucose metabolism in diabetic mice and healthy humans upon green tea consumption.

Results
Green tea promoted glucose metabolism in healthy human volunteers at 1.5 g/body in oral glucose tolerance tests. Green tea also lowered blood glucose levels in diabetic db+/db+ mice and streptozotocin-diabetic mice 2–6 h after administration at 300 mg/kg without affecting serum insulin level, whereas no effect was observed in control mice (+m/+m and normal ddY mice). The serum protein profiles of db+/db+ and +m/+m mice were analyzed for the first time by SELDI (surface-enhanced laser desorption/ionization)-TOF (time-of-flight)-MS (mass spectrometry), and then compared to investigate any effects of oral green tea administration on serum proteins. The protein profiles in db+/db+ mice showed that the spectral peak intensities at the mass/charge ratios (m/z) of 4119, 4203, 4206, 4211, 4579, 9311 and 18691 were >3 times lower, and those of 13075, 17406, 17407, 17418, 17622, 18431 and 26100 were >3 times higher than respective peak intensities in +m/+m mice. When green tea was administered to db+/db+ mice, the peak intensities were markedly decreased at m/z 11651 and 11863, and slightly decreased at m/z 4212. The peak intensities at 7495, 7595, 7808, 14983, 15614, 31204 were markedly increased after the administration.

Conclusion
The present study provides evidence that green tea has an antidiabetic effect. Although we could not find simple reversed effect of green tea on the diabetes-induced modifications of the levels of several serum proteins, we found that the 4211 (4212) Da protein level that was decreased in the diabetic state was further decreased after green tea administration. This is the first report demonstrating that a certain serum protein may be involved in the antihyperglycemic effect of green tea. The contribution of this protein should be further studied.
Histologic assessment of biliary obstruction with different percutaneous endoluminal techniques
Authors: Rossi Michele , Cantisani Vito , Salvatori Filippo Maria , Rebonato Alberto , Greco Laura , Giglio Luigi , Guido Giampiero , Pagliara Elisa , David Vincenzo 
Published: August 2004

Abstract
Background
Despite the sophisticated cross sectional image techniques currently available, a number of biliary stenosis or obstructions remain of an uncertain nature. In these pathological conditions, an "intrinsic" parietal alteration is the cause of biliary obstruction and it is very difficult to differentiate benign from malignant lesions using cross-sectional imaging procedures alone. We evaluated the efficacy of different endoluminal techniques to achieve a definitive pathological diagnosis in these situations.

Methods
Eighty patients underwent brushing, and or biopsy of the biliary tree through an existing transhepatic biliary drainage route. A subcoort of 12 patients needed balloon-dilatation of the bile duct and the material covering the balloon surface was also sent for pathological examination (balloon surface sampling). Pathological results were compared with surgical findings or with long-term clinical and instrumental follow-ups. Success rates, sensitivity, specificity, accuracy, confidential intervals, positive predictive value and negative predictive value of the three percutaneous techniques in differentiating benign from malignant disease were assessed.
The agreement coefficient of biopsy and brushing with final diagnosis was calculated using the Cohen's "K" value.

Results
Fifty-six patients had malignant strictures confirmed by surgery, histology, and by clinical follow-ups. Success rates of brushing, balloon surface sampling, and biopsy were 90.7, 100, and 100%, respectively. The comparative efficacy of brushing, balloon-surface sampling, and biopsy resulted as follows: sensitivity of 47.8, 87.5, and 92.1%, respectively; specificity of 100% for all the techniques; accuracy of 69.2, 91.7 and 93.6%, Positive Predictive Value of 100% for all the procedures and Negative Predictive Value of 55, 80, and 75%, respectively.

Conclusions
Percutaneous endoluminal biopsy is more accurate and sensitive than percutaneous bile duct brushing in the detection of malignant diseases (p < 0.01).
Microarray analysis reveals genetic pathways modulated by tipifarnib in acute myeloid leukemia
Authors: Raponi Mitch , Belly Robert T , Karp Judith E , Lancet Jeffrey E , Atkins David , Wang Yixin 
Published: August 2004

Abstract
Background
Farnesyl protein transferase inhibitors (FTIs) were originally developed to inhibit oncogenic ras, however it is now clear that there are several other potential targets for this drug class. The FTI tipifarnib (ZARNESTRA™, R115777) has recently demonstrated clinical responses in adults with refractory and relapsed acute leukemias. This study was conducted to identify genetic markers and pathways that are regulated by tipifarnib in acute myeloid leukemia (AML).

Methods
Tipifarnib-mediated gene expression changes in 3 AML cell lines and bone marrow samples from two patients with AML were analyzed on a cDNA microarray containing approximately 7000 human genes. Pathways associated with these expression changes were identified using the Ingenuity Pathway Analysis tool.

Results
The expression analysis identified a common set of genes that were regulated by tipifarnib in three leukemic cell lines and in leukemic blast cells isolated from two patients who had been treated with tipifarnib. Association of modulated genes with biological functional groups identified several pathways affected by tipifarnib including cell signaling, cytoskeletal organization, immunity, and apoptosis. Gene expression changes were verified in a subset of genes using real time RT-PCR. Additionally, regulation of apoptotic genes was found to correlate with increased Annexin V staining in the THP-1 cell line but not in the HL-60 cell line.

Conclusions
The genetic networks derived from these studies illuminate some of the biological pathways affected by FTI treatment while providing a proof of principle for identifying candidate genes that might be used as surrogate biomarkers of drug activity.
Performance of dye-affinity beads for aluminium removal in magnetically stabilized fluidized bed
Authors: Yavuz Handan , Say Ridvan , Andaç Müge , Bayraktar Necmi , Denizli Adil 
Published: August 2004

Abstract
Background
Aluminum has recently been recognized as a causative agent in dialysis encephalopathy, osteodystrophy, and microcytic anemia occurring in patients with chronic renal failure who undergo long-term hemodialysis. Only a small amount of Al(III) in dialysis solutions may give rise to these disorders.

Methods
Magnetic poly(2-hydroxyethyl methacrylate) (mPHEMA) beads in the size range of 80–120 μm were produced by free radical co-polymerization of HEMA and ethylene dimethacrylate (EDMA) in the presence of magnetite particles (Fe3O4). Then, metal complexing ligand alizarin yellow was covalently attached onto mPHEMA beads. Alizarin yellow loading was 208 μmol/g. These beads were used for the removal of Al(III) ions from tap and dialysis water in a magnetically stabilized fluidized bed.

Results
Al(III) adsorption capacity of the beads decreased with an increase in the flow-rate. The maximum Al(III) adsorption was observed at pH 5.0. Comparison of batch and magnetically stabilized fluidized bed (MSFB) maximum capacities determined using Langmuir isotherms showed that dynamic capacity (17.5 mg/g) was somewhat higher than the batch capacity (11.8 mg/g). The dissociation constants for Al(III) were determined using the Langmuir isotherm equation to be 27.3 mM (MSFB) and 6.7 mM (batch system), indicating medium affinity, which was typical for pseudospecific affinity ligands. Al(III) ions could be repeatedly adsorbed and desorbed with these beads without noticeable loss in their Al(III) adsorption capacity.

Conclusions
Adsorption of Al(III) demonstrate the affinity of magnetic dye-affinity beads. The MSFB experiments allowed us to conclude that this inexpensive sorbent system may be an important alternative to the existing adsorbents in the removal of aluminium.