bluuebunny/crossref_metadata_2025_split huggingface dataset:
Light: An Extrinsic Factor Influencing Animal-based Research
Authors: Dauchy Robert T , Hanifin John P , Brainard George C , Blask David E 
Published: January 2024

AbstractLight is an environmental factor that is extrinsic to animals themselves and that exerts a profound influence on the regulation of circadian, neurohormonal, metabolic, and neurobehavioral systems of all animals, including research animals. These widespread biologic effects of light are mediated by distinct photoreceptors—rods and cones that comprise the conventional visual system and melanopsin-containing intrinsically photosensitive retinal ganglion cells (ipRGCs) of the nonvisual system that interact with the rods and cones. The rods and cones of the visual system, along with the ipRGCs of the nonvisual system, are species distinct in terms of opsins and opsin concentrations and interact with one another to provide vision and regulate circadian rhythms of neurohormonal and neurobehavioral responses to light. Here, we review a brief history of lighting technologies, the nature of light and circadian rhythms, our present understanding of mammalian photoreception, and current industry practices and standards. We also consider the implications of light for vivarium measurement, production, and technological application and provide simple recommendations on artificial lighting for use by regulatory authorities, lighting manufacturers, designers, engineers, researchers, and research animal care staff that ensure best practices for optimizing animal health and well-being and, ultimately, improving scientific outcomes.
Wheat landraces as sources of high grain quality and nutritional properties
Authors: Shamanin V. P. , Pototskaya I. V. , Esse S. A. , Gladkih M. S. , Shepelev S. S. , Zuev E. V. , Vinichenko N. A. , Koksel H. , Morgounov A. I. 
Published: January 2024

Background. Improving the grain quality of modern spring bread wheat cultivars is a highly relevant task of breeding. To solve this problem, old and local wheat varieties (landraces) are of considerable interest. A rich collection of them is available among the plant genetic resources preserved at VIR. With this in view, the aim of this research was to identify sources of high protein, gluten, macro- and micronutrient content out of the landraces from the VIR collection for improvement of wheat grain quality through breeding.Materials and methods. Field and laboratory research were conducted in the experimental field of Omsk State Agrarian University under the conditions of the southern forest-steppe of Western Siberia in 2020–2021. Sowing was carried out on fallow on conventional sowing dates. Mineral composition in the grain of the studied landraces was analyzed at the Kurchatov Genomic Center, Novosibirsk, using atomic absorption spectrometry techniques.Results. The research results showed that landraces from different regions of Russia, Kazakhstan, Tajikistan, and Kyrgyzstan were characterized by high levels of protein (18.4–18.8%) and gluten (35.9–36.0%) in grain. Landraces from Kazakhstan had low Zn content (on average 38.3 mg/kg), while those from Kyrgyzstan, on the contrary, had high content of Zn (41.9 mg/kg) and Fe (55.1 mg/kg), and landraces from Tajikistan had high K content (3820 mg/kg). A positive relationship between the concentrations of Mg, Mn, Fe, and Zn was found in the grain of wheat landraces.Conclusion. Wheat landraces are of interest as genetic resources for the development of high-protein cultivars with improved nutritional value of grain for the milling and breadmaking industries.
Fruit and seed plumpness, germination and viability of rare plants in Yakutia
Authors: Androsova D. N. , Danilova N. S. , Tkachenko K. G. , Staroverov N. E. , Gryaznov A. Yu. 
Published: January 2024

Background. With the increasing anthropogenic impact on nature, conservation and renewal of rare and endangered plants in natural cenoses is an urgent problem. Quality assessment, identification of full-fledged plump seeds, and determination of their viability is the way to develop reproduction technologies and provide a possibility of repatriating these species to their natural habitats. Collecting and studying natural flora species in botanical gardens helps to save biological resources of useful species and recommend them for urban landscaping.Materials and methods. X-ray techniques were used to analyze seed quality and viability of rare species in the flora of Yakutia: Adonis sibirica Patrin, Phlojodicarpus sibiricus (Steph. ex Spreng.) Koso-Pol., Iris laevigata Fisch. et C.A. Mey., Iris sanguinea Donn, and Paeonia anomala L. Methods developed for the application of microfocus radiography to fruits and seeds were used in the X-ray analysis.Results. Seed quality was assessed according to guidelines. It was shown that fruits and seeds of the studied species developed under the conditions of Yakutia were full-fledged (plump), but due to the presence of a morphophysiological type of dormancy in them, they could germinate only after a cold or multistage stratification.Conclusion. Assessment of reproductive diaspore quality and viability in rare and endangered plant species of Yakutia will make it possible to develop technologies for increasing their seed germination rates and restoring the natural populations of these species.
Occurrence of the <i>FBF</i>7 fire blight resistance locus in accessions of apple wild species (<i>Malus</i> Mill.)
Authors: Lyzhin A. S. , Saveleva N. N. 
Published: January 2024

Background. Fire blight (Erwinia amylovora (Burill) Winslow et al.) is a dangerous disease of fruit crops. In the Russian Federation, fire blight is one of the quarantine diseases. Apple resistance to fire blight is controlled polygenically. However, the data on the genotypes of Malus Mill. wild species and varieties in the context of individual resistance loci are scarce. The purpose of the research was studying the genetic collection of apple wild species according to the FBF7 fire blight resistance locus to identify promising sources of resistance to E. amylovora.Materials and methods. The materials of this study included 23 wild and two cultivated apple-tree species (50 accessions) from the genetic collection of the I.V. Michurin FSC. The FBF7 QTL for fire blight resistance was identified with the flanking SCAR-markers AE10-375 and GE-8019, and SSR-marker CH-F7-Fb1.Results and conclusion. The GE-8019 marker was identified in 50.0% of the apple accessions, AE10-375 in 76.0% of the accessions, and CH-F7-Fb1 in 30.0%. Inter- and intraspecific polymorphism of the Malus genus was revealed for the analyzed resistance locus, as well as for individual DNA markers linked to the FBF7 QTL. The GE-8019 and AE10-375 markers flanking the FBF7 QTL were found in 42.0% of the studied genotypes. Meanwhile, three diagnostic markers (GE-8019, AE10-375, and CH-F7-Fb1) were identified only in 7 accessions: M. × robusta var. persicifolia (Carr.) Rehd. (к-41279), M. × cerasifera var. hiemalis Spach. (к-2342) (Ser. Baccatae), M. sylvestris (L.) Mill. (k-73 and k-123), M. × spectabilis var. albi plena (Ait.) Borkh. (к-2416) (Ser. Malus), M. × sargentii (Rehd.) Langenf. (k-2428) (Ser. Toringonae), and M. coronaria (L.) Mill. (к-2336) (Ser. Coronariae). These forms are promising genetic sources of resistance to E. amylovora.
New cultivars of vegetable cowpea (<i>Vigna unguiculata</i> (l.) walp.) developed at VIR
Authors: Gurkina M. V. , Burlyaeva M. O. 
Published: January 2024

Background. Cowpea is an important legume crop of great nutritional and economic value, ranking fourth in the world among leguminous crops in the area of cultivation. This crop is known to tolerate high temperatures and droughts, so new cowpea cultivars adapted to the local arid conditions of the Lower Volga are of considerable interest.Materials and methods. Mass and individual selection techniques were applied to develop new cultivars from cowpea landraces held in the VIR collection. Selection was carried out at Astrakhan Experiment Station of VIR in 2012–2018, and variety trials took place in 2019–2021.Results. Cvs. ‘Samma Nova’ and ‘Pasta Grin’ were released for vegetable use. The pod yield of ‘Samma Nova’ is 12.18–14.85 t/ha, seed yield is 0.92–1.14 t/ha, protein content is 28.8% in seeds and 27.1% in pods, and its growing season is 57–66 days. The cultivar is bushy, with synchronous pod and seed maturation, suitable for mechanized cultivation. The pod yield of ‘Pasta Grin’ is 24.68–25.84 t/ha, seed yield is 0.82–1.04 t/ha, protein content is 29.1% in pods and 23.6% in seeds. It is a mid-season cultivar, with a rambling stem, intended for growing on a trellis. Both cultivars significantly exceeded the reference (cv. ‘Sibirsky Razmer”) in most of the studied indicators. The breeding work with cowpea accessions showed that pod harvesting at the commercial ripeness stage stimulated plants to develop new pods, which extended the duration of fruiting and increased productivity. The maximum number of pods in all studied cultivars was formed in the first 20 days of the fruiting period.Conclusion. In 2022, according to the results of competitive and local trials, cvs. ‘Samma Nova’ and ‘Pasta Grin’ were included in the State Register for Selection Achievements (National List). The zones of cultivation and seed production for these cultivars are Astrakhan and Volgograd Provinces, Krasnodar and Stavropol Territories, and the Republic of Crimea.
Grain quality indicators and size-dependent fractional composition in winter rye cultivars under the conditions of the Lower Volga region
Authors: Nuzhdina N. N. , Zhiganov D. A. , Ermolaeva T. Y. , Kulevatova T. B. , Zlobina L. N. , Andreeva L. V. , Kulikova V. A. , Salmanova N. A. , Nechaev V. N. 
Published: January 2024

Background. Grain quality indicators of winter rye cultivars were analyzed in connection with the size-dependent fractional composition of their grain in the Lower Volga environments.Materials and methods. The research material included 22 cultivars developed at various Russian scientific institutions, 3 Belarusian ones, and 3 cultivars bred at the Federal Center of Agriculture Research of the South-East Region. Comparative trials were conducted in 2021–2022 on 13.2 m2 plots in two field replications. The following grain quality indicators were studied: grain test weight, 1000 grain weight, size-dependent fractional composition, Hagberg falling number, amylogram peak height, starch gelatinization temperature, protein content, and rheological properties of the meal/water slurry.Results. Protein content was recorded at a level of 9.98–10.85%, while the starch gelatinization temperature was high due to the June air temperatures higher than the norm. Significant differences among the cultivars were found in the fractional composition of grain: 12 forms were identified with medium viscosity of the meal/water slurry and the fine-grain fraction content up to 30% of the total weight.Conclusions. There is a positive significant correlation between the five studied indicators characterizing the rheological properties of the meal/water slurry made from the grain of winter rye cultivars and the grain fraction composition (0.82*–0.91*).
Nomenclatural standards and genetic certificates for apple-tree cultivars developed at the North Caucasian Federal Scientific Center of Horticulture, Viticulture, wine-making
Authors: Ulyanovskaya E. V. , Suprun I. I. , Bogdanovich T. V. , Chernutskaya E. A. , Tokmakov S. V. , Talovina G. V. 
Published: January 2024

Background. The development of genetic certificates and nomenclatural standards for newly released cultivars of Malus domestica Borkh. (apple tree) ensures an opportunity to preserve the original and authentic genetic and morphological information on domestic cultivars promising for the south of Russia. The purpose of this study was to develop genetic certificates and nomenclatural standards for 7 apple-tree cultivars developed at the North Caucasian Federal Scientific Center of Horticulture, Viticulture, Wine-making (NCFSCHVW), five of which were released jointly with the All-Russian Research Institute of Fruit Crop Breeding (VNIISPK).Materials and methods. The materials included apple-tree cultivars resistant or immune to scab (Venturia inaequalis (Cooke) G. Winter) from the NCFSCHVW collection stock. Conventional herbarization and DNA fingerprinting methods were used. For cultivar certification, an improved technique of DNA sampling and 12 microsatellite markers were applied.Results. Unique DNA profile certificates and nomenclatural standards were produced for 7 apple-tree cultivars: ‘Vasilisa’, ‘Karmen’, ‘Krasny Yantar’, ‘Soyuz’ and ‘Rassvet’ (with the Rvi6 gene) released jointly by the NCFSCHVW and VNIISPK, plus ‘Zolotoye Letneye’ and ‘Feya’ developed at the NCFSCHVW. The apple-tree herbarium specimens were placed for perpetual storage in the WIR Herbarium of the N.I. Vavilov All-Russian Institute of Plant Genetic Resources (VIR).Conclusion. The results obtained are promising for identification and authenticity verification of new domestic apple-tree cultivars during their reproduction and cultivation.
Resistance of old winter bread wheat landraces to tan spot
Authors: Mironenko N. V. , Kovalenko N. M. , Baranova O. A. , Mitrofanova O. P. 
Published: January 2024

Background. The most effective and environmentally safe way to combat wheat diseases is to produce cultivars resistant to their pathogens. For this purpose, old landraces are often used as genetically diverse sources of traits important for breeding. In the process of wheat breeding for resistance to tan spot caused by the fungus Pyrenophora tritici-repentis (Died.) Drechs. (abbr. Ptr), selection is carried out against the dominant allele of Tsn1, the gene of sensitivity to the toxin Ptr ToxA, which induces necrosis and represents the main pathogenicity factor of Ptr controlled by the ToxA gene. The aim of the study was to characterize a set of bread wheat (Triticum aestivum L.) accessions from the VIR collection for resistance to various Ptr populations, genotype these accessions using Xfcp623 – a DNA marker of the Tsn1 gene, and identify sources of tan spot resistance.Materials and methods. Sixty-seven accessions of winter bread wheat landraces were studied. Seedling resistance to two Ptr populations was assessed using a 5-point scale adopted at VIZR. The allelic state of Tsn1 was identified by PCR.Results. Dominant alleles of Tsn1 were found for 55% of the studied accessions. Seventeen accessions were resistant or moderately resistant to two Ptr populations and an isolate from Krasnodar Territory previously used for their characterization. Nine of them had the tsn1tsn1 genotype, and 8 had Tsn1Tsn1. The accessions mainly belonged to three agroecological groups proposed by N. I. Vavilov: “steppe winter bread wheat (Banatka wheats)”, “North European forest awnless bread wheats (Sandomirka wheats)”, and “Caucasian mountain winter bread wheat”.Conclusion. The identified 17 accessions resistant to Ptr are potential breeding sources of resistance. In the studied set of accessions, no significant relationship was found between the allelic state of the Tsn1 gene in the accession and its response to the infection with pathogen populations, including isolates with the ToxA gene.
Anatomy, ploidy level, and essential oil composition of <i>Hyssopus officinalis</i> ʻNikitskiy Beliyʼ <i>in vitro</i> and <i>ex situ</i>
Authors: Bulavin I. V. , Ivanova N. N. , Miroshnichenko N. N. , Saplev N. M. , Feskov S. A. 
Published: January 2024

Background. Clonal micropropagation is a biotechnological method for plant multiplication. The existing data on the structure of organs in vitro, genetic stability, and essential oil composition are limited for Hyssopus officinalis L., so this study was aimead at investigating these aspects under a short period of in vitro culturing.Materials and methods. Plants of Hyssopus officinalis ʻNikitskiy Beliyʼ cultivated ex situ, in vitro and ex vitro were analyzed. Conventional methods were applied to study plant anatomy, ploidy level, and relative DNA content, as well as to extract and analyze essential oil. Statistical analysis was performed using the Past 4.03 software.Results. According to the results obtained, with 6-BAP introduced into MS nutrient medium in optimal concentrations (0.3– 0.5 mg/L), the general in vitro structure of leaf blades in the developed microshoots was similar to those in ex situ plants, while the qualitative and quantitative changes observed were induced by the effect of specific culturing conditions and plant rejuvenation. The analysis of the ploidy level and relative DNA content in the nuclei isolated from the leaf tissue cells of the microshoots ex vitro after adaptation revealed no changes compared to the ex situ leaf parameters. The mass fraction of essential oil and its component composition in the mother plants and ex vitro regenerants were similar.Conclusion. Cultivation of Hyssopus officinalis ʻNikitskiy Beliyʼ microshoots on MS nutrient medium with 6-BAP optimal concentrations promotes morphogenesis without significant deviations in the ploidy level, relative DNA content, essential oil yield, or its component composition. The developed protocol for clonal micropropagation of Hyssopus officinalis ʻNikitskiy Beliyʼ provides clones identical to the ex situ plants.
Diversity of barley accessions from the Asian part of Russia in greenbug resistance
Authors: Radchenko E. E. , Abdullaev R. A. , Dyatlova K. D. , Akimova D. E. , Zveinek I. A. 
Published: January 2024

Background. The use of barley cultivars resistant to greenbug (Schizaphis graminum Rondani) is an effective, economical and ecology-friendly way to control the dangerous phytophage. The insect is able to overcome the resistance of the host plant, which necessitates a relentless search for new genes to ensure reliable protection of barley fields from the pest.Materials and methods. Resistance to the Krasnodar greenbug population was assessed in 345 barley accessions from the Asian part of Russia. Besides, resistance to S. graminum was studied in cv. ‘Post’ (carrier of the Rsg1 gene), a pure line derived from cv. ‘Onokhoisky’ (k-16626, Buryatia) heterogeneous for this trait, and landraces from Mongolia (k-3885, k-3904, and k-4080). Juvenile plants were infested with aphids in the laboratory, and when a susceptible control died, the damage to experimental barley accessions was assessed using a scoring scale. Genetic control of greenbug resistance in the line derived from cv. ‘Onokhoisky’ was studied using the insect’s test clones and an analysis of the segregation in F2 hybrids from crossing the resistant line with cv. ‘Belogorsky’ susceptible to the aphid, when the plants were infested with the Krasnodar population of the phytophage and with clones of S. graminum.Results and conclusions. We identified 7 accessions heterogeneous for aphid resistance. Among them, plants with a high level of greenbug resistance were found in three landraces from Tuva (k-14714, k-14718, and k-14733). Resistance was also clearly expressed in the line derived from cv. ‘Onokhoisky’. This cultivar is protected by a dominant allele that differs from the previously identified Rsg1, as well as from the alleles found in Mongolian landraces k-3904, k-4080, and k-3885. ‘Onokhoisky’ also has genes with low expressivity, which manifest themselves when the main gene for resistance to S. graminum appears ineffective.
Microclonal propagation of elite industrial grape cultivars (<i>Vitis vinifera</i> L.)
Authors: Fizikova A. Yu. 
Published: January 2024

Background. The grape is one of the most economically significant berry crops: its cultivation area covers over 6.7 million hectares. Due to certain biological characteristics of grapes, such as a long juvenile period (5–8 years), a high degree of genomic heterozygosity, and the frequently encountered phenomenon of inbred depression, when homozygotization during hybridization leads to a loss of viability and production characteristics of the cultivar, vegetative propagation becomes the basis for grape reproduction and industrial cultivation. Microclonal propagation is the foundation for rejuvenation and revitalization of modern vineyards. Developing approaches for microclonal propagation of elite industrial grape cultivars remains a relevant task for the modern wine industry.Materials and methods. The industrial grape cultivars ‘Malbec’, ‘Merlot’, ‘Chardonnay’, and ‘Riesling’ from the field collection of the All-Russian National Research institute of Viticulture and Winemaking “Magarach” were used for the work.Results. This research succeeded in devising a universal, one-stage protocol for the microclonal propagation of elite industrial grape cultivars, such as ‘Merlot’, ‘Chardonnay’, ‘Malbec’, and ‘Riesling’, making the production of plants ready for adaptation into the soil (ex vitro) within 1 months after rooting.Conclusion. The use of the microclonal propagation protocol developed in this study for industrial grape cultivars will reduce labor costs and shorten the time required to obtain a plant ready for adaptation to open ground two to three times.
Dynamics of variability in agronomic characters of millet cv. ‘Gorlinka’ under the climate conditions of the southern part of the East European Plain
Authors: Kulemina T. V. 
Published: January 2024

Background. The change of temperature conditions is cyclic by nature. Since the 1970s this process has been intensifying several times faster towards global climate warming. The effect of high temperature and drought is expected to lead to undesirable consequences for the economy, a decrease in yields, and a threat to food security. This aspect requires an assessment of the ongoing climate changes and identification of the causes that induce the response of plants to them.Materials and methods. The zoned millet cultivar ‘Gorlinka’ served as the material for this study. Variability was assessed from 2001 through 2019 for such characters as the duration of the growing season, grain yield, grain size, and plant height. The cultivar was tested according to VIR’s guidelines. Statistical data processing was performed using Microsoft Excel.Results and conclusion. The climate change in the southern part of the East European Plain (Tambov Province) from 2001 to 2019 towards warming in June under sufficient moisture (HTC = 1.26) did not significantly affect the duration of the growing season or grain yield of cv. ‘Gorlinka’.