bluuebunny/crossref_metadata_2025_split huggingface dataset:
Mapping mining-induced ground fissures and their evolution using UAV photogrammetry
Authors: Fu Yaokun , Wu Yongzheng , Yin Xiwen , Zhang Yanjun 
Published: September 2023

Due to its unique geomorphological characteristics, the loess gully region is easy to produce ground fissures under the action of coal mining, destroy the ground infrastructures, induce geological disasters, and threaten the safety of people’s lives and property. Therefore, it is particularly important to accurately obtain information about the development of mining-induced ground fissures and study their spatial-temporal evolution mechanism. Based on the 1212 working face of a mining area in Yulin City, Shaanxi Province, this paper studies the extraction method and spatial-temporal evolution mechanism of ground fissures by combining remote sensing images and field survey data. The study shows that this proposed method significantly reduces noise points and mis-extraction, and the accuracy is more than 80%, improving the extraction accuracy of ground fissures and making the process more automated. By comparing the extraction accuracy of ground fissures at different flight altitudes, we determine that the optimal flight altitude for the research area is 60 m. At the beginning of the working face mining stage, the proportion of low-density areas of ground fissures continues to increase. Some low-density areas transition into high-density areas, which is consistent with the progress of the working face advancement. After the end of the working face retreat, the width of the ground fissures tends to be evenly distributed. The mining-induced ground fissures in the Loess gully and ravine region have good self-similarity. A dynamic development model of ground fissures is constructed to reveal its formation mechanism. The research conclusions can provide a technical support for geological disaster monitoring and land ecological restoration in mining areas.
Strikingly low prevalence of pituitary incidentalomas in a teaching hospital in Uruguay
Authors: Pineyro Maria M. , Sosa Natalia , Rivero Florencia , Tripodi Diego , Negrotto Matias , Lima Ramiro 
Published: September 2023

BackgroundPituitary incidentalomas are an occurrence documented in 10.6% of post-mortem examinations, 4%–20% of computed tomography (CT) scans, and 10%–38% of magnetic resonance imaging (MRI) cases, primarily consisting of microincidentalomas (&lt;1 cm in size). However, the prevalence of pituitary incidentalomas in Uruguay remains unexplored. This study aimed to ascertain the prevalence of pituitary incidentalomas at our hospital.MethodsIn this investigation, we retrospectively identified patients who underwent brain CT and MRI at our hospital over a 1-year span due to conditions other than suspected or known pituitary disorders. The time frame covered was from 1 January to 31 December 2017. Our analysis encompassed all scans, and we conducted interviews with patients discovered to have pituitary incidentalomas. Furthermore, we conducted biochemical assessments in accordance with clinical and imaging traits.ResultsDuring the study period, a total of 3,894 patients underwent imaging procedures. Of these, 1,146 patients underwent MRI scans, and 2,748 underwent CT scans. The mean age was 53.1 ± 19 years, with a relatively even distribution between genders (50.6% women). The majority of imaging requisitions originated from the emergency department (43%), followed by outpatient clinics (29%), and inpatient wards (28%). Common reasons for imaging requests included trauma (20.4%), headaches (11.3%), and stroke (10.9%). Among these cases, two pituitary incidentalomas were detected, resulting in a prevalence of 5 cases per 10,000 individuals annually (0.051%). Both of these cases were initially identified through CT scans, with subsequent MRI scans performed for further assessment. The final diagnoses were a vascular aneurysm and a sellar meningioma, with the latter patient also exhibiting secondary hypothyroidism. Notably, no instances of pituitary adenomas were encountered.ConclusionsThe prevalence of pituitary incidentalomas within our hospital was notably low. Further research is necessary to more comprehensively investigate the occurrence of pituitary incidentalomas in our country.
Epigenome-wide DNA methylation profiling in comparison between pathological and physiological hypertrophy of human cardiomyocytes
Authors: Shi Hangchuan , Chen Si , Meng Fanju W. , Ossip Deborah J. , Yan Chen , Li Dongmei 
Published: September 2023

Background: Physiological and pathological stimuli result in distinct forms of cardiac hypertrophy, but the molecular regulation comparing the two, especially at the DNA methylation level, is not well understood.Methods: We conducted an in vitro study using human cardiomyocytes exposed to angiotensin II (AngII) and insulin-like growth factor 1 (IGF-1) to mimic pathologically and physiologically hypertrophic heart models, respectively. Whole genome DNA methylation patterns were profiled by the Infinium human MethylationEPIC platform with &gt;850 K DNA methylation loci. Two external datasets were used for comparisons and qRT-PCR was performed for examining expression of associated genes of those identified DNA methylation loci.Results: We detected 194 loci that are significantly differentially methylated after AngII treatment, and 206 significant loci after IGF-1 treatment. Mapping the significant loci to genes, we identified 158 genes corresponding to AngII treatment and 175 genes to IGF-1 treatment. Using the gene-set enrichment analysis, the PI3K-Akt signaling pathway was identified to be significantly enriched for both AngII and IGF-1 treatment. The Hippo signaling pathway was enriched after IGF-1 treatment, but not for AngII treatment. CDK6 and RPTOR are components of the PI3K-Akt pathway but have different DNA methylation patterns in response to AngII and IGF-1. qRT-PCR confirmed the different gene expressions of CDK6 and PRTOR.Conclusion: Our study is pioneering in profiling epigenome DNA methylation changes in adult human cardiomyocytes under distinct stress conditions: pathological (AngII) and physiological (IGF-1). The identified DNA methylation loci, genes, and pathways might have the potential to distinguish between pathological and physiological cardiac hypertrophy.
Case report: A case of new mutation in SERPINC1 leading to thrombotic microangiopathy
Authors: Li Bing , Zhang Xiaohui , Lv Hailin , Yang Xiaoqing , Gao Yanxia , Hu Zhao , Ma Chengjun 
Published: September 2023

Introduction: Hereditary antithrombin-III deficiency can significantly increase the risk for thrombosis, which is common in limb deep vein and pulmonary cases. However, thrombotic microangiopathy (TMA) caused by hereditary antithrombin deficiency is rare.Case Presentation: We reported the case of a 32-year-old Chinese female patient with TMA with renal injury caused by decreased antithrombin-III activity due to a new mutation (chr1-173884049 c.50A&gt;G) in SERPINC1, which encodes antithrombin-III. In this case, the patient had no history of relevant drug use, diabetes, or monoclonal plasma cells in the bone marrow puncture. Consequently, TMA of the kidney was considered secondary to hereditary antithrombin-III deficiency. Gene detection was the only clue that led us to suspect that TMA was caused by hereditary antithrombin deficiency.Conclusion: Our findings indicated that for patients with repeated findings of antithrombin-III activity less than 50%, the possibility of antithrombin-III deficiency and complete gene detection must be considered immediately after excluding the use of anticoagulants and lack of availability to facilitate early detection, diagnosis, and intervention.
Patient-reported outcomes in patients with primary immunodeficiency diseases in Japan: baseline results from a prospective observational study
Authors: Kanegane Hirokazu , Ishimura Masataka , Kawai Toshinao , Okada Satoshi , Okamatsu Nobuaki , Go Madoka , Noto Shinichi 
Published: September 2023

IntroductionPrimary immunodeficiency diseases (PIDs) are rare inherited diseases resulting in impaired immunity. People with PID experience lower health-related quality of life (HR-QOL) and disease-related burdens in daily activities. This ongoing, prospective observational study aims to evaluate disease activity, treatment status, treatment-related burden, daily activities, and HR-QOL in patients with PID in Japan over a 1-year period. In this interim report (database lock: July 29, 2022), we present baseline results.MethodsParticipants were enrolled between November 2021 and May 2022; data were collected four times/year per participant until May 2023 using an online electronic patient-reported outcomes system. Patients with PID and healthy volunteers aged ≥12 years, residing in Japan, and with access to a smartphone were eligible. HR-QOL (primary endpoint) was assessed by the EuroQol-5 Dimensions-5 Levels (EQ-5D-5L) and the Medical Outcomes Study 36-Item Short Form Health Survey (SF-36). Work productivity was assessed by the Work Productivity and Activity Impairment (WPAI) Questionnaire. Other aspects of PID and burden were assessed with a new questionnaire developed in-house. The study is registered at the University hospital Medical Information Network clinical trials registry (UMIN000045622).ResultsThe full interim analysis set comprised 71 patients with PID and 47 healthy volunteers. The most common International Union of Immunological Societies PID category was primary antibody deficiency (56.3% of patients). Complications were common, especially recurrent respiratory tract infections (63.4%). Most patients with PID were treated with immunoglobulin replacement therapy (73.2%); 22.4% of these patients had serum immunoglobulin levels &lt;700 mg/dL. Among patients who did not undergo hematopoietic cell transplantation, EQ-5D-5L (n=67) and SF-36 (n=59) Physical and Mental Component Summary scores were significantly lower than in healthy volunteers (p &lt; 0.001). WPAI absenteeism, work productivity loss, and activity impairment scores were significantly lower in 42 working patients with PID than in 37 working healthy volunteers (p &lt; 0.05). Other results indicated that patients with PID experience substantial burdens related to medical visits, expenses, work, and daily activities.DiscussionThis interim analysis confirms that patients with PID in Japan have lower HR-QOL and work productivity compared with healthy individuals and experience substantial limitations and burdens in their daily lives.
Blockade of PD-1 and LAG-3 expression on CD8+ T cells promotes the tumoricidal effects of CD8+ T cells
Authors: Ma Jiajia , Yan Shufang , Zhao Ying , Yan Huifang , Zhang Qian , Li Xinxia 
Published: September 2023

BackgroundThe diffuse large B-cell lymphoma (DLBCL) has the highest incidence of all lymphomas worldwide. To investigate the functions of lymphocyte activation gene 3 (LAG-3) and programmed cell death 1 (PD-1) in tissues and peripheral blood of patients with DLBCL, the expression of LAG-3 and PD-1 genes in DLBCL-TCGA were analyzed.MethodsLAG-3 and PD-1 mRNA levels in DLBCL were analyzed using data from The Cancer Genome Atlas (TCGA) database. Utilize the Genotype-Tissue Expression (GTEx) database for assessing the variance in the expression of LAG-3, PD-1, and other associated factors between the tissues of DLBCL patients and healthy individuals. Immunohistochemistry was applied to detect the expression of LAG-3 and PD-1 levels in 137 cases of DLBCL tissues and 20 cases of reactive lymphoid hyperplasia. The prognostic value of LAG-3 and PD-1 were assessed using the Kaplan-Meier curve. The Estimation of Stromal and Immune cells in Malignant Tumor tissues using Expression data (ESTIMATE) and ssGSEA algorithm were used to explore the immune microenvironment of DLBCL. Additionally, the expression and co-expression of LAG-3 and PD-1 were detected on CD4 and CD8 T cells in peripheral blood samples from 100 cases of DLBCL tissues and 30 cases of healthy individuals using flow cytometry.ResultsAccording to TCGA database, LAG-3 and PD-1 gene expression levels were significantly up-regulated in DLBCL tissues. LAG-3 and PD-1 levels were also strongly positively correlated with those of most infiltrating immune cells. Overall survival of patients with high LAG-3 and PD-1 co-expression was significantly shorter than that of patients with low co-expression. In DLBCL patients, LAG-3 and PD-1 were highly expressed in peripheral blood CD8+ T cells. In addition, LAG-3 was highly expressed in CD4+ T cells, while the expression of PD-1 in CD4+ T cells of DLBCL patients showed no significant difference compared to healthy individuals. Additionally, CD8+ T cells and SU-DHL6/OCI-LY3 from patients with DLBCL were co-cultured in vitro; after addition of LAG-3 and/or PD-1 inhibitors alone, an increased perforin and granzyme B secretion levels by CD8+ T cells were detected, as well as an increase in the overall proportion of tumor cells undergoing apoptosis.ConclusionHigh LAG-3 and PD-1 levels significantly inhibit CD8+ T cell function, resulting in weakened ability to kill tumor cells. Combined LAG-3 and PD-1 blockade can restore CD8+ T cell function and provides a potential avenue for development of personalized cellular immunotherapy for DLBCL.
Effect of various hepatectomy procedures on circulating tumor cells in postoperative patients: a case-matched comparative study
Authors: Lei YongRong , Wang XiShu , Tian YiChen , Xu Rong , Pei Jun , Fu YuNa , Sun Heng , Wang YaNi , Zheng Ping , Xia Feng , Wang JianHua 
Published: September 2023

BackgroundThe objective of this study is to elucidate the prevalence of systemic circulating tumor cells (CTCs) prior to and following resection of hepatocellular carcinoma (HCC), and to compare the disparities in postoperative CTCs in terms of quantity and classifications between the open liver resection (OPEN) and laparoscopic liver resection (LAP) cohorts.Patients, materials, and methodsFrom September 2015 to May 2022, 32 consecutive HCC patients who underwent laparoscopic liver resection at Southwest Hospital were retrospectively enrolled in this study. The clinicopathological data were retrieved from a prospectively collected computer database. Patients in the OPEN group matched at a 1:1 ratio with patients who underwent open liver resection during the study period on age, gender, tumor size, number of tumors, tumor location, hepatitis B surface antigen (HBsAg) positivity, alpha-fetoprotein (AFP) level, TNM and Child-Pugh staging from the database of patients to form the control group. The Can-Patrol CTC enrichment technique was used to enrich and classify CTCS based on epithelial-mesenchymal transformation phenotypes. The endpoint was disease-free survival (DFS), and the Kaplan–Meier method and multiple Cox proportional risk model were used to analyze the influence of clinicopathological factors such as total CTCs and CTC phenotype on prognosis.ResultsThe mean age of the 64 patients with primary liver cancer was 52.92 years (23–71), and 89.1% were male. The postoperative CTC clearance rate was more significant in the OPEN group. The total residual CTC and phenotypic CTC of the LAP group were significantly higher than those of the OPEN group (p = 0.017, 0.012, 0.049, and 0.030, respectively), which may increase the possibility of metastasis (p = 0.042). In Kaplan–Meier analysis, DFS was associated with several clinicopathological risk factors, including Barcelona Clinical Liver Cancer (BCLC) stage, tumor size, and vascular invasion. Of these analyses, BCLC Stage [p = 0.043, HR (95% CI) =2.03(1.022–4.034)], AFP [p = 0.007, HR (95% CI) =1.947 (1.238–3.062)], the number of positive CTCs [p = 0.004, HR (95% CI) =9.607 (2.085–44.269)] and vascular invasion [p = 0.046, HR (95% CI) =0.475 (0.22–1.023)] were significantly associated with DFS.ConclusionIn comparison to conventional OPEN technology, LAP technology has the capacity to augment the quantity of epithelial, mixed, and mesenchymal circulating tumor cells (CTCs). Following the surgical procedure, there was a notable increase in the total CTCs, epithelial CTCs, and mixed CTCs within the LAP group, indicating a potential drawback of LAP in facilitating the release of CTCs.
Effects of compost as a soil amendment on bacterial community diversity in saline–alkali soil
Authors: Xu Daolong , Yu Xiaowen , Chen Jin , Li Xiufen , Chen Jian , Li JiangHua 
Published: September 2023

IntroductionSoil salinization poses a worldwide challenge that hampers agricultural productivity.MethodsEmploying high-throughput sequencing technology, we conducted an investigation to examine the impact of compost on the diversity of bacterial communities in saline soils. Our study focused on exploring the diversity of bacterial communities in the inter-root soil of plants following composting and the subsequent addition of compost to saline soils.ResultsCompared to the initial composting stage, Alpha diversity results showed a greater diversity of bacteria during the rot stage. The germination index reaches 90% and the compost reaches maturity. The main bacterial genera in compost maturation stage are Flavobacterium, Saccharomonospora, Luteimonas and Streptomyces. Proteobacteria, Firmicutes, and Actinobacteria were the dominant phyla in the soil after the addition of compost. The application of compost has increased the abundance of Actinobacteria and Chloroflexi by 7.6 and 6.6%, respectively, but decreased the abundance of Firmicutes from 25.12 to 18.77%. Redundancy analysis revealed that soil factors pH, solid urease, organic matter, and total nitrogen were closely related to bacterial communities.DiscussionThe addition of compost effectively reduced soil pH and increased soil enzyme activity and organic matter content. An analysis of this study provides theoretical support for compost’s use as a saline soil amendment.
Modulation of associations between education years and cortical volume in Alzheimer’s disease vulnerable brain regions by Aβ deposition and APOE ε4 carrier status in cognitively normal older adults
Authors: Kim Hak-Bin , Kim Sung-Hwan , Um Yoo Hyun , Wang Sheng-Min , Kim Regina E. Y. , Choe Yeong Sim , Lee Jiyeon , Kim Donghyeon , Lim Hyun Kook , Lee Chang Uk , Kang Dong Woo 
Published: September 2023

BackgroundEducation years, as a measure of cognitive reserve, have been shown to affect the progression of Alzheimer’s disease (AD), both pathologically and clinically. However, inconsistent results have been reported regarding the association between years of education and intermediate structural changes in AD-vulnerable brain regions, particularly when AD risk factors were not considered during the preclinical phase.ObjectiveThis study aimed to examine how Aβ deposition and APOE ε4 carrier status moderate the relationship between years of education and cortical volume in AD-vulnerable regions among cognitively normal older adults.MethodsA total of 121 participants underwent structural MRI, [18F] flutemetamol PET-CT imaging, and neuropsychological battery assessment. Multiple regression analysis was conducted to examine the interaction between years of education and the effects of potential modifiers on cortical volume. The associations between cortical volume and neuropsychological performance were further explored in subgroups categorized based on AD risk factors.ResultsThe cortical volume of the left lateral occipital cortex and bilateral fusiform gyrus demonstrated a significant differential association with years of education, depending on the presence of Aβ deposition and APOE ε4 carrier status. Furthermore, a significant relationship between the cortical volume of the bilateral fusiform gyrus and AD-nonspecific cognitive function was predominantly observed in individuals without AD risk factors.ConclusionAD risk factors exerted varying influences on the association between years of education and cortical volume during the preclinical phase. Further investigations into the long-term implications of these findings would enhance our understanding of cognitive reserves in the preclinical stages of AD.
Gradient-based feature-attribution explainability methods for spiking neural networks
Authors: Bitar Ammar , Rosales Rafael , Paulitsch Michael 
Published: September 2023

IntroductionSpiking neural networks (SNNs) are a model of computation that mimics the behavior of biological neurons. SNNs process event data (spikes) and operate more sparsely than artificial neural networks (ANNs), resulting in ultra-low latency and small power consumption. This paper aims to adapt and evaluate gradient-based explainability methods for SNNs, which were originally developed for conventional ANNs.MethodsThe adapted methods aim to create input feature attribution maps for SNNs trained through backpropagation that process either event-based spiking data or real-valued data. The methods address the limitations of existing work on explainability methods for SNNs, such as poor scalability, limited to convolutional layers, requiring the training of another model, and providing maps of activation values instead of true attribution scores. The adapted methods are evaluated on classification tasks for both real-valued and spiking data, and the accuracy of the proposed methods is confirmed through perturbation experiments at the pixel and spike levels.Results and discussionThe results reveal that gradient-based SNN attribution methods successfully identify highly contributing pixels and spikes with significantly less computation time than model-agnostic methods. Additionally, we observe that the chosen coding technique has a noticeable effect on the input features that will be most significant. These findings demonstrate the potential of gradient-based explainability methods for SNNs in improving our understanding of how these networks process information and contribute to the development of more efficient and accurate SNNs.
Learning-based sliding mode synchronization for fractional-order Hindmarsh-Rose neuronal models with deterministic learning
Authors: Chen Danfeng , Li Junsheng , Yuan Chengzhi , He Jun , Zhu Wenbo 
Published: September 2023

IntroductionIn recent years, extensive research has been conducted on the synchronous behavior of neural networks. It is found that the synchronization ability of neurons is related to the performance of signal reception and transmission between neurons, which in turn affects the function of the organism. However, most of the existing synchronization methods are faced with two difficulties, one is the structural parameter dependency, which limits the promotion and application of synchronous methods in practical problems. The other is the limited adaptability, that is, even when faced with the same control tasks, for most of the existing control methods, the control parameters still need to be retrained. To this end, the present study investigates the synchronization problem of the fractional-order HindmarshRose (FOHR) neuronal models in unknown dynamic environment.MethodsInspired by the human experience of knowledge acquiring, memorizing, and application, a learning-based sliding mode control algorithm is proposed by using the deterministic learning (DL) mechanism. Firstly, the unknown dynamics of the FOHR system under unknown dynamic environment is locally accurately identified and stored in the form of constant weight neural networks through deterministic learning without dependency of the system parameters. Then, based on the identified and stored system dynamics, the model-based and relearning-based sliding mode controller are designed for similar as well as new synchronization tasks, respectively.ResultsThe synchronization process can be started quickly by recalling the empirical dynamics of neurons. Therefore, fast synchronization effect is achieved by reducing the online computing time. In addition, because of the convergence of the identification and synchronization process, the control experience can be constantly replenished and stored for reutilization, so as to improve the synchronization speed and accuracy continuously.DiscussionThe thought of this article will also bring inspiration to the related research in other fields.