bluuebunny/crossref_metadata_2025_split huggingface dataset:
Estimating mortality of small passerine birds colliding with wind turbines
Authors: Nilsson A. L. K. , Molværsmyr S. , Breistøl A. , Systad G. H. R. 
Published: December 2023

AbstractAs demand for renewable energy is rising, wind power development is rapidly growing worldwide. In its wake, conflicts arise over land use changes converting pristine nature into industrial power plants and its associated adverse biodiversity effects, crowned by one of the most obvious and deadly consequences: bird collisions. Most post-construction studies report low levels of avian mortality, but the majority of these studies are conducted primarily on larger birds. However, the diversity and abundance of small passerine birds are rarely reflected in the carcass surveys, although they in numeric proportion to their abundances should be the most numerous. The assumption that surveys find all carcasses seems thus rarely fulfilled and passerine mortality is likely to be grossly underestimated. We therefore designed an experiment with dummy birds to estimate mortality of small-bodied passerines and other small-bodied birds during post-construction surveys, tested in a medium-sized wind farm in western Norway. The wind farm was surveyed weekly during the migration periods by carcass survey teams using trained dogs to find killed birds. The dogs in the carcass surveys were more successful in locating the large than the small dummy birds (60–200 g), where they found 74% of the large dummy birds. Detecting the smaller category (5–24 g) was more demanding and the dogs only found 17% of the small dummy birds. Correcting the post-construction carcass survey outcome with the results from the experiment leads to an almost fourfold increase in estimated mortality rates, largely due to the low detection rate of the smallest category. The detection rates will naturally vary between wind farms, depending on the specific habitat characteristics, the efficiency of the carcass surveys and the search intervals. Thus, implementing a simple experiment with dummy birds to future post-construction surveys will produce more accurate estimates of the wind turbine mortality rates, and thus improve our understanding of the biodiversity effects of conforming to a more sustainable future.
Behavioral evidence for global consciousness transcending national parochialism
Authors: Liu James H. , Choi Sarah Y. , Lee I-Ching , Leung Angela K.-y. , Lee Michelle , Lin Mei-Hua , Hodgetts Darrin , Chen Sylvia Xiaohua 
Published: December 2023

AbstractWhile national parochialism is commonplace, individual differences explain more variance in it than cross-national differences. Global consciousness (GC), a multi-dimensional concept that includes identification with all humanity, cosmopolitan orientation, and global orientation, transcends national parochialism. Across six societies (N = 11,163), most notably the USA and China, individuals high in GC were more generous allocating funds to the other in a dictator game, cooperated more in a one-shot prisoner’s dilemma, and differentiated less between the ingroup and outgroup on these actions. They gave more to the world and kept less for the self in a multi-level public goods dilemma. GC profiles showed 80% test–retest stability over 8 months. Implications of GC for cultural evolution in the face of trans-border problems are discussed.
Features of animal babbling in the vocal ontogeny of the gray mouse lemur (Microcebus murinus)
Authors: Langehennig-Peristenidou Alexandra , Romero-Mujalli Daniel , Bergmann Tjard , Scheumann Marina 
Published: December 2023

AbstractIn human infants babbling is an important developmental stage of vocal plasticity to acquire maternal language. To investigate parallels in the vocal development of human infants and non-human mammals, seven key features of human babbling were defined, which are up to date only shown in bats and marmosets. This study will explore whether these features can also be found in gray mouse lemurs by investigating how infant vocal streams gradually resemble the structure of the adult trill call, which is not present at birth. Using unsupervised clustering, we distinguished six syllable types, whose sequential order gradually reflected the adult trill. A subset of adult syllable types was produced by several infants, with the syllable production being rhythmic, repetitive, and independent of the social context. The temporal structure of the calling bouts and the tempo-spectral features of syllable types became adult-like at the age of weaning. The age-dependent changes in the acoustic parameters differed between syllable types, suggesting that they cannot solely be explained by physical maturation of the vocal apparatus. Since gray mouse lemurs exhibit five features of animal babbling, they show parallels to the vocal development of human infants, bats, and marmosets.
Nanofluidic qPCR unable to detect and serotype Streptococcus pneumoniae in urine samples of hospitalized South African patients with community-acquired pneumonia
Authors: Olwagen Courtney P. , Jeche Tariro R. , Van Der Merwe Lara , Nunes Marta C. , Madhi Shabir A. , Baillie Vicky L. 
Published: December 2023

AbstractPneumonia is a major cause of death among adults living with HIV in South Africa, but the etiology of many cases remains unknown. This study evaluated the utility of a nanofluidic qPCR assay to detect and serotype Streptococcus pneumoniae in urine samples from patients hospitalized with community-acquired pneumonia (CAP). The nanofluidic qPCR assay was optimized to target 13 pneumococcal serotypes and 4 reference genes. Archived urine samples collected from patients > 15 years of age hospitalized with pneumonia between April 2018 and August 2019 were retrospectively tested using the nanofluidic qPCR assay, BinaxNOW urine antigen test, and standard LytA qPCR. Blood culture was undertaken on a subset of the samples at the discretion of the attending physician. Cohens' Kappa statistics were used to determine the concordance between the methods. Of the 828 adults hospitalized for CAP, urine samples were available in 53% (n = 439). Of those, a random subset of 96 (22%) samples underwent testing. Of the participants included in the final analysis, the mean age was 45.8 years (SD 16.2), 49% (n = 47) were female, 98% (n = 94) were black, and 66% (n = 63) were living with HIV infection. The nanofluidic qPCR method was able to detect PCV13 vaccine strains spiked into urine samples; however, the method failed to detect any pneumococcus in clinical samples. In comparison, 19% of the pneumonia cases were attributed to S. pneumoniae using urine antigen testing. Nanofluidic qPCR is unable to detect and serotype Streptococcus pneumoniae in urine samples of South Africans hospitalized with CAP.
Back-propagation optimization and multi-valued artificial neural networks for highly vivid structural color filter metasurfaces
Authors: Clini de Souza Arthur , Lanteri Stéphane , Hernández-Figueroa Hugo Enrique , Abbarchi Marco , Grosso David , Kerzabi Badre , Elsawy Mahmoud 
Published: December 2023

AbstractWe introduce a novel technique for designing color filter metasurfaces using a data-driven approach based on deep learning. Our innovative approach employs inverse design principles to identify highly efficient designs that outperform all the configurations in the dataset, which consists of 585 distinct geometries solely. By combining Multi-Valued Artificial Neural Networks and back-propagation optimization, we overcome the limitations of previous approaches, such as poor performance due to extrapolation and undesired local minima. Consequently, we successfully create reliable and highly efficient configurations for metasurface color filters capable of producing exceptionally vivid colors that go beyond the sRGB gamut. Furthermore, our deep learning technique can be extended to design various pixellated metasurface configurations with different functionalities.
Spring-assisted posterior vault expansion: a parametric study to improve the intracranial volume increase prediction
Authors: Deliège Lara , Ramdat Misier Karan , Silva Dulanka , James Gregory , Ong Juling , Dunaway David , Jeelani Noor Ul Owase , Schievano Silvia , Borghi Alessandro 
Published: December 2023

AbstractSpring-assisted posterior vault expansion has been adopted at the London Great Ormond Street Hospital for Children to treat raised intracranial pressure in patients affected by syndromic craniosynostosis, a congenital calvarial anomaly causing the premature fusion of skull sutures. This procedure involves elastic distractors used to dynamically reshape the skull and increase the intracranial volume (ICV). In this study, we developed and validated a patient-specific model able to predict the ICV increase and carried out a parametric study to investigate the effect of surgical parameters on that final volume. Pre- and post-operative computed tomography data relative to 18 patients were processed to extract simplified patient-specific skull shape, replicate surgical cuts, and simulate spring expansion. A parametric study was performed to quantify each parameter’s impact on the surgical outcome: for each patient, the osteotomy location was varied in a pre-defined range; local sensitivity of the predicted ICV to each parameter was analysed and compared. Results showed that the finite element model performed well in terms of post-operative ICV prediction and allowed for parametric optimization of surgical cuts. The study indicates how to optimize the ICV increase according to the type of procedure and provides indication on the most robust surgical strategy.
Family history, socioeconomic factors, comorbidities, health behaviors, and the risk of sudden cardiac arrest
Authors: Jung Eujene , Park Jeong Ho , Ro Young Sun , Ryu Hyun Ho , Cha Kyoung-Chul , Do Shin Sang , Hwang Sung Oh ,   The Cardiac Arrest Pursuit Trial with Unique Registration, Epidemiologic Surveillance (CAPTURES) project investigators, Hwang Sung Oh , Do Shin Sang , Lee Mi Jin , Park Jong-Hak , Kim Su Jin , Oh Sung Bum , Shin Jonghwan , Park Seung Min , Sim Min Seob , Kim Won Young , Park In-Cheol , Ryu Hyun Ho , You Yeonho , Kim Sang-Chul , Park Ju Ok 
Published: December 2023

AbstractGenetic, environment, and behaviour factors have a role in causing sudden cardiac arrest (SCA). We aimed to determine the strength of the association between various risk factors and SCA incidence. We conducted a multicentre case-control study at 17 hospitals in Korea from September 2017 to December 2020. The cases included out-of-hospital cardiac arrest aged 19–79 years with presumed cardiac aetiology. Community-based controls were recruited at a 1:1 ratio after matching for age, sex, and urban residence level. Multivariable conditional logistic regression analysis was conducted. Among the 1016 cases and 1731 controls, 948 cases and 948 controls were analysed. A parental history of SCA, low educational level, own heart disease, current smoking, and non-regular exercise were associated with SCA incidence (Adjusted odds ratio [95% confidence interval]: 2.51 [1.48–4.28] for parental history of SCA, 1.37 [1.38–2.25] for low edication level, 3.77 [2.38–5.90] for non-coronary artery heart disease, 4.47 [2.84–7.03] for coronary artery disease, 1.39 [1.08–1.79] for current smoking, and 4.06 [3.29–5.02] for non-regular exercise). Various risk factors related to genetics, environment, and behaviour were independently associated with the incidence of SCA. Establishing individualised SCA prevention strategies in addition to general prevention strategies is warranted.
Heating and storage of structured acylglycerols with succinyl-linked stigmasterol residue does not cause negative chemical or biological changes
Authors: Rudzińska M. , Grygier A. , Olejnik A. , Kowalska K. , Kmiecik D. , Chojnacka A. , Gładkowski W. , Grudniewska A. , Przybylski R. 
Published: December 2023

AbstractFour structured acylglycerols with stigmasterol bonded by a succinyl linker were investigated and their stability were analyzed. Samples were heated to 60 °C and kept at that temperature to simulate storage, and to 180 °C to simulate frying conditions. The degradation of the synthesized compounds and formed derivatives was determined, and their cytotoxicity and genotoxicity on normal human cells from the digestive system was determined. Holding at 180 °C resulted in greater degradation of the compounds than holding at 60 °C. The most stable compound in each sample proved to be one with oleic acid in its structure—1,3-dioleoyl-2-stigmasterylsuccinoyl-sn-glycerol (DO2SSt) at 60 °C and 1,2-dioleoyl-3-stigmasterylsuccinoyl-sn-glycerol (DO3SSt) at 180 °C. These results indicate that the type of fatty acid in the molecule is more important than its position in the glycerol structure. None of the diacylmonostigmasterylsuccinoyl-sn-glycerols (DASStGs) before or after heating exhibited cytotoxic or genotoxic potential to small intestine and colon mucosa cells.
Evaluation of building washing machines as an extreme environment for potentially pathogenic fungi
Authors: Zareshahrabadi Zahra , Amirzadeh Neda , Pakshir Keyvan , Nasr Reza , Mohammadi Rasoul , Zomorodian Kamiar 
Published: December 2023

AbstractWashing machines are commonly used in households and are considered indispensable appliances for maintaining cleanliness and hygiene. Environmental conditions within household washing machines are ideal for fungal colonization, which may pose risks to human health and contribute to sick building syndrome. This study aimed to investigate the fungal species contamination in the building washing machines. A total of 50 building washing machines were swab-sampled at three locations: the detergent drawer, the inner and outer parts of the rubber door seal. The housekeeping conditions of these appliances were assessed through a questionnaire. The isolated fungi were identified using standard mycological diagnostic procedures and molecular analysis based on the ITS1/ITS4 and β-tubulin gene regions. The possibility of fungal agents transferring from contaminated washing machines to autoclaved clothes during laundry cycles was investigated. Fungi were detected in 82% of the sampled appliances, with the inner rubber door seal being the most frequently colonized area. Using conventional and molecular techniques, we identified 122 fungal isolates, encompassing 17 diverse genera of molds, yeast-like, and yeast fungi. The mold fungi included 14 genera of hyaline and black genus. Among these, the most frequently identified genera of hyaline and black fungi were Aspergillus (27.7%), and Cladosporium (10.7%), respectively. This study demonstrates that building washing machines may serve as suitable ecological niches for fungal growth and transmission. Therefore, regular cleaning and disinfection of these devices are necessary.
Effect of 40 Hz light flicker on cognitive impairment and transcriptome of hippocampus in right unilateral common carotid artery occlusion mice
Authors: Niu Zhaorui , Yu Minjie , Xu Peixia , Liu Renchuan , Li Shangda , Wu Congchong , Huang Bochao , Ye Xinyi , Hu Jianbo , Xu Yi , Lu Shaojia 
Published: December 2023

AbstractVascular cognitive impairment caused by chronic cerebral hypoperfusion (CCH) seriously affects the quality of life of elderly patients. However, there is no effective treatment to control this disease. This study investigated the potential neuroprotective effect of the 40 Hz light flicker in a mouse model of CCH. CCH was induced in male C57 mice by right unilateral common carotid artery occlusion (rUCCAO), leading to chronic brain injury. The mice underwent 40 Hz light flicker stimulation for 30 days after surgery. The results showed that 40 Hz light flicker treatment ameliorated memory deficits after rUCCAO and alleviated the damage to neurons in the frontal lobe and hippocampus. Light flicker administration at 40 Hz decreased IL-1β and TNF-α levels in the frontal lobe and hippocampus, but immunohistochemistry showed that it did not induce angiogenesis in mice with rUCCAO. Gene expression profiling revealed that the induction of genes was mainly enriched in inflammatory-related pathways. Our findings demonstrate that 40 Hz light flicker can suppress cognitive impairment caused by rUCCAO and that this effect may be involved in the attenuation of neuroinflammation.
Relationship between disproportionately enlarged subarachnoid-space hydrocephalus and white matter tract integrity in normal pressure hydrocephalus
Authors: Lee Sunju , Lim Jae-Sung , Cheong E-nae , Lee Yoojin , Kim Jae Woo , Kim Ye Eun , Jo Sungyang , Kim Hyung-Ji , Shim Woo Hyun , Lee Jae-Hong 
Published: December 2023

AbstractNormal pressure hydrocephalus (NPH) patients had altered white matter tract integrities on diffusion tensor imaging (DTI). Previous studies suggested disproportionately enlarged subarachnoid space hydrocephalus (DESH) as a prognostic sign of NPH. We examined DTI indices in NPH subgroups by DESH severity and clinical symptoms. This retrospective case–control study included 33 NPH patients and 33 age-, sex-, and education-matched controls. The NPH grading scales (0–12) were used to rate neurological symptoms. Patients with NPH were categorized into two subgroups, high-DESH and low-DESH groups, by the average value of the DESH scale. DTI indices, including fractional anisotropy, were compared across 14 regions of interest (ROIs). The high-DESH group had increased axial diffusivity in the lateral side of corona radiata (1.43 ± 0.25 vs. 1.72 ± 0.25, p = 0.04), and showed decreased fractional anisotropy and increased mean, and radial diffusivity in the anterior and lateral sides of corona radiata and the periventricular white matter surrounding the anterior horn of lateral ventricle. In patients with a high NPH grading scale, fractional anisotropy in the white matter surrounding the anterior horn of the lateral ventricle was significantly reduced (0.36 ± 0.08 vs. 0.26 ± 0.06, p = 0.03). These data show that DESH may be a biomarker for DTI-detected microstructural alterations and clinical symptom severity.
Periportal hepatocyte proliferation at midgestation governs maternal glucose homeostasis in mice
Authors: Kozuki Satoshi , Kabata Mio , Sakurai Satoko , Iwaisako Keiko , Nishimura Tomomi , Toi Masakazu , Yamamoto Takuya , Toyoshima Fumiko 
Published: December 2023

AbstractThe maternal liver is challenged by metabolic demands throughout pregnancy. However, hepatocyte dynamics and their physiological significance in pregnancy remain unclear. Here, we show in mice that hepatocyte proliferation is spatiotemporally regulated in each liver lobular zone during pregnancy, with transient proliferation of periportal and pericentral hepatocytes during mid and late gestation, respectively. Using adeno-associated virus (AAV)−8-mediated expression of the cell cycle inhibitor p21 in hepatocytes, we show that inhibition of hepatocyte proliferation during mid, but not late, gestation impairs liver growth. Transcriptionally, genes involved in glucose/glycogen metabolism are downregulated in late pregnancy when midgestational hepatocyte proliferation is attenuated. In addition, hepatic glycogen storage is abolished, with concomitant elevated blood glucose concentrations, glucose intolerance, placental glycogen deposition, and fetal overgrowth. Laser capture microdissection and RNA-seq analysis of each liver lobular zone show zone-specific changes in the transcriptome during pregnancy and identify genes that are periportally expressed at midgestation, including the hyaluronan-mediated motility receptor (Hmmr). Knockdown of Hmmr in hepatocytes by AAV8-shHmmr suppresses periportal hepatocyte proliferation at midgestation and induces impaired hepatic glycogen storage, glucose intolerance, placental glycogen deposition and fetal overgrowth. Our results suggest that periportal hepatocyte proliferation during midgestation is critical for maternal glycogen metabolism and fetal size.
Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems
Authors: Weinheimer Alaina R , Aylward Frank O , Leray Matthieu , Scott Jarrod J 
Published: December 2023

Abstract
Phages (viruses of bacteria and archaea) are a ubiquitous top-down control on microbial communities by selectively infecting and killing cells. As obligate parasites, phages are inherently linked to processes that impact their hosts’ distribution and physiology, but phages can also be impacted by external, environmental factors, such as UV radiation degrading their virions. To better understand these complex links of phages to their hosts and the environment, we leverage the unique ecological context of the Isthmus of Panama, which narrowly disconnects the productive Tropical Eastern Pacific (EP) and nutrient-poor Tropical Western Atlantic (WA) provinces. We could thus compare patterns of phage and prokaryotic communities at both global scales (between oceans) and local-scales (between habitats within an ocean). Although both phage and prokaryotic communities differed sharply between the oceans, phage community composition did not significantly differ between mangroves and reefs of the WA, while prokaryotic communities were distinct. These results suggest phages are more shaped by dispersal processes than local conditions regardless of spatial scale, while prokaryotes tend to be shaped by local conditions at smaller spatial scales. Collectively, we provide a framework for addressing the co-variability between phages and prokaryotes in marine systems and identifying factors that drive consistent versus disparate trends in community shifts, essential to informing models of biogeochemical cycles that include these interactions.
Matrix community models for ecology and evolution
Authors: Lytle David A. , Tonkin Jonathan D. 
Published: December 2023

AbstractEcological communities are shaped by biotic interactions as well as environmental forces, and both must be incorporated to obtain models capable of forecasting realistic community dynamics. Many community models first specify pairwise biotic interactions and then secondarily examine how extrinsic factors such as abiotic conditions affect species abundances. A disadvantage of this approach is that the species interactions themselves are often environment and context specific, making parameterization difficult. We propose an alternative approach, matrix community models (MCMs), which are sets of matrix population models linked by an assumption of aggregate density dependence. MCMs incorporate detailed species autecology but are neutral with respect to pairwise species interactions, instead allowing interactions to be revealed within the model structure. These model-revealed species interactions, including competitive exclusion, facilitation, and interference competition, shape the distribution and abundance of species within communities and generate empirically testable predictions about species interactions. We develop a framework for building MCMs using vital rates in a stochastic, multispecies framework. Single-species matrix population models are connected via an assumption of aggregate density dependence, pairwise species interactions are estimated with sensitivity analysis, and community trajectories are analyzed under different environmental regimes using standard statistical tools and network analysis. MCMs have the advantage that pairwise species interactions need not be specified a priori, and that mechanistic demographic-environment linkages permit forecasting of community dynamics under novel, non-stationary environmental regimes. A challenge is that species’ autecological vital rates, such as fecundity, growth and survivorship, must be measured under a diverse range of environmental conditions to parameterize the models. We illustrate the approach with examples and discuss prospects for future theoretical and empirical developments.