bluuebunny/crossref_metadata_2025_split huggingface dataset:
Palynological evidence for the Palaeocene evolution of the forearc basin, Indus Suture Zone, Ladakh, India
Authors: Upadhyay Rajeev , Ram‐Awatar  , Kar R. K. , Sinha Anshu K. 
Published: July 2004

AbstractThe discovery of Permian, Mesozoic and Palaeocene palynomorphs from the Nindam forearc basin, exposed along the Indus Suture Zone in Ladakh, is reported. The palynomorphs are from volcanogenic sandstones and are poorly preserved, distorted and show the effects of abrasion (striation marks). The frequent occurrence of Proxapertites indicates the assemblage is at least Palaeocene in age. The Palaeocene palynomorphs and sediments were transported to the Nindam trough from nearby elevated landward regions (islands). These Palaeocene provenance areas were characterized by an estuarine, nearshore, tropical, warm‐humid environment and were situated at equatorial palaeolatitudes. However, the occurrence of Permian and Mesozoic palynomorphs in the assemblage indicates that the Late Palaeozoic and Mesozoic Tethyan sedimentary rocks exposed along the northern margin of the Indian plate were redeposited into the tectonically active Cretaceous–Palaeocene trench–subduction complex that existed between the Indian and the Asian plates until the collision took place at ∼50–60 Ma.
Seed production of Chenopodium album in competition with field vegetables
Authors: Grundy A C , Mead A , Burston S , Overs T 
Published: July 2004

SummaryTotal weed control within a crop is both difficult and expensive to achieve, so that some weeds will often remain to set seed. The seed production resulting from these weeds will ultimately affect the sustainability of the weed control strategy. If too much is allowed to return each season there could be a gradual, but significant, increase in the potential weed flora over a number of seasons. Field trials were carried out in 2000 and 2001 to quantify the potential magnitude of this weed seed return from Chenopodium album L., grown at two planting densities either in pure stands or in competition with one of two crops (cabbage or onion). Crop and weed weights and weed seed production were notably greater in 2001. Both dry weight and seed production of C. album were suppressed by increasing planting density or by the presence of crop, with cabbage having a more suppressive effect. Despite the plasticity in seed production, a linear relationship was demonstrated between log weed seed production and log weed biomass that was robust over a range of competitive situations with onion and cabbage, at different planting densities and in growing seasons. The study also demonstrated that the relationship could be combined with an existing simple competition model to allow the consequences of incomplete weed control to be assessed in terms of potential weed seed return.
Effect of sowing date and host resistance on the establishment and development of Orobanche crenata in faba bean and common vetch
Authors: Pérez‐de‐Luque A , Sillero J C , Moral A , Cubero J I , Rubiales D 
Published: July 2004

SummaryThe effect of early and late sowing dates on the establishment of Orobanche crenata Forsk. (crenate broomrape) in resistant and susceptible cultivars of faba bean (Vicia faba L.) and vetch (Vicia sativa L.) were studied over four seasons in southern Spain. Differences in establishment, development and shoot emergence of the parasite were compared. With resistant faba bean and vetch cultivars, there was reduced attachment and shoot emergence of O. crenata with all sowing dates. Susceptible cultivars were more severely affected by the parasite with early sowing. Orobanche crenata development was also delayed in resistant cultivars. Crop yield, estimated by the number of pods per plant, decreased with late sowings. The combined use of resistant cultivars and early sowing is a useful tool as part of an integrated control strategy. Resistant cultivars allow early sowing (with low O. crenata attack), thus avoiding yield losses due to the short crop cycle with late sowing.
An investigation of genetic variation in Cirsium arvense field patches
Authors: Hettwer U , Gerowitt B 
Published: July 2004

SummaryThe genetic structure of typical Cirsium arvense patch populations in two arable fields was examined. Patches were mapped and plant samples were taken in these patches. Plants of a central patch and four surrounding patches were sampled in 1 year to investigate the influence of root fragment dispersal. Plants of another patch were sampled in three subsequent years to investigate the patch development. The genotypes of the plants were examined using repetitive enterogenic primer (REP) and inter simple sequence repeat (ISSR) analysis. The mean proportion of distinguishable genotypes ranged from 0.13 to 0.67 and the evenness index ranged from 0.58 to 1.00. Differences in genotypes between neighbouring patches indicated that root fragment dispersal via soil cultivation was of minor importance. Three years sampling within a patch showed that the patch mainly ‘grew’ via the establishment of new clones rather than by clonal growth of one genotype. The influence of various factors caused by population demography or arable practice on patch development in an arable field is discussed. Although various factors can help to maintain genetic diversity, there is strong evidence for regular seedling establishment in arable fields.
Solid substrate for production of Alternaria alternata conidia: a potential mycoherbicide for the control of Eichhornia crassipes (water hyacinth)
Authors: Babu RM , Sajeena A , Seetharaman K 
Published: July 2004

Summary Eichhornia crassipes (water hyacinth), a major aquatic weed in India, is one of the targets in a biological weed control research programme in India. A fungal pathogen, Alternaria alternata, is being evaluated as a biological control agent for this weed. The feasibility of solid substrate for the mass production of A. alternata has been examined. Conidia production and virulence of A. alternata were affected by temperature, light and incubation period. The highest number of conidia were produced on rice seed followed by wheat, sorghum, maize seeds and cornmeal at 20°C when exposed to near‐ultraviolet than on the other substrates, while the least conidia were observed on these substrates under light conditions. At 20°C, large numbers of virulent conidia were produced on rice seeds after 4 weeks of incubation under constant dark conditions. Henceforth, the use of rice seeds as a solid substrate for production of A. alternata could be a feasible method to produce conidia in a village co‐operative scenario in India.
Effect of weed control treatments on weeds, seed yield, yield components and nodulation in winter lentil
Authors: Erman M , Tepe I , Yazlik A , Levent R , Ipek K 
Published: July 2004

SummaryGood weed control is critical in winter lentil production. This study was conducted on the lentil cultivar Sazak 91 during the winter seasons of 1997–98 and 1998–99 to determine the most appropriate method for controlling weeds. Hand weeding (weed‐free control), weedy control (inoculated), weedy control (uninoculated), hand hoeing once, hand hoeing twice, trifluralin, imazethapyr, linuron, prometryn, phenmedipham + desmedipham, trifluralin + hand hoeing and linuron + hand hoeing treatments were evaluated and the effects of herbicides on nodulation in lentil were investigated. In the first year Convolvulus arvensis, Centaurea balsamita, Ranunculus arvensis, Cephalaria syriaca and Lathyrus spp., dominated whereas in the second year Hordeum vulgare, Adonis aestivalis and Centaurea depressa were the dominant weed species in the plots. Prometryn, hand hoeing, linuron and a combination of linuron + hand hoeing were found to be the most effective for control of weeds, resulting in the highest yield in winter lentil throughout the investigation. Trifluralin and imazethapyr had a phytotoxic effect on the lentil plants. None of the weed control treatments had any adverse effects on nodulation and Rhizobium leguminosarum inoculation was not found to have any effect on the competitive ability of the lentil plants.
Effects of oxadiargyl on direct‐seeded rice and Echinochloa crus‐galli under aerobic and anaerobic conditions
Authors: Gitsopoulos T K , Froud‐Williams R J 
Published: July 2004

SummaryDose–response experiments were conducted in glasshouse pot experiments to investigate the selectivity of oxadiargyl, a recently introduced herbicide, in direct‐seeded rice under both aerobic and anaerobic conditions. Crop sensitivity to oxadiargyl was comparatively greater for wet‐seeded (anaerobic) than for dry‐seeded rice (aerobic). Likewise, greater efficacy against Echinochloa crus‐galli (L.) was also observed under anaerobic conditions. These results indicate greater activity of oxadiargyl under anaerobic conditions, but that application pre‐sowing with subsequent flooding would reduce selectivity in wet‐seeded rice. The results are discussed in relation to rice production in Mediterranean agriculture.
The glutamate dehydrogenase gene gdhA increased the resistance of tobacco to glufosinate
Authors: Nolte S A , Young B G , Mungur R , Lightfoot D A 
Published: July 2004

SummaryThe gene gdhA from Escherichia coli, that encodes a NADPH‐dependent glutamate dehydrogenase (GDH), directs a novel pathway in transgenic plants that allows an increase in ammonium assimilation. Glufosinate leads to plant death by the irreversible inhibition of glutamate synthetase (GS) leading to a disruption of subsequent GS‐related processes resulting in elevated ammonium and disruption of photorespiration. Therefore, it was speculated that the gdhA‐transformed plants may exhibit a novel mechanism of resistance to glufosinate by altered activity of the GDH‐directed pathway(s) and subsequently related processes. Studies were conducted in the greenhouse to evaluate the resistance of tobacco plants containing the gdhA gene to glufosinate. Five tobacco genotype lines were investigated including a non‐transformed control line, a positive control line and three transformed lines with levels of increasing GDH activity directed by the gdhA gene. Plants transformed with the gdhA gene expressed up to six times increased level of resistance (GR50) to glufosinate compared with the non‐transformed control, which is 100 times less resistant than plants transformed with the bar gene. The GDH activity among lines was highly correlated (r2 = 0.9903) with the level of herbicide resistance. Thus, the use of the E. coli gdhA gene in plant transformations can provide an additional mechanism for resistance to glufosinate.
Estimating population abundance in plant species with dormant life‐stages: Fire and the endangered plant Grevillea caleyi R. Br.
Authors: Auld Tony D. , Scott Judith 
Published: July 2004

Summary  Assessment of the conservation significance of a species at a particular site involves estimating the population size. Generally this is based on a single survey. However, where plant species vary greatly in abundance in response to disturbance regimes, there will be uncertainty associated with the use of single estimates of abundance. The interpretation of such estimates is dependent on an understanding of the ecology of the species and the disturbance regimes that impact on it. We examined the usefulness of abundance estimates in the endangered shrub Grevillea caleyi (a fire‐sensitive shrub with a persistent soil seed bank) from south‐eastern Australia, where fire is a major landscape disturbance. Comparisons of estimates of abundance before and after fire showed very large changes in the number of plants of G. caleyi above ground. Changes in abundance of over two orders of magnitude were observed. The longer the site was left unburnt, the greater the magnitude of change in abundance after the next fire. Above‐ground plants may be rare or absent at sites unburnt for over 15–20 years, but were abundant after fire, due to re‐establishment from the soil seed bank. Sites burnt by two fires in quick succession showed declines in population abundance, most likely due to the soil seed bank not being replenished between such short interval fires. Assessments of the conservation significance of remnant sites of G. caleyi and similar species based on a single sample of above‐ground plant abundance at one time are considered inappropriate. The amount of available habitat for G. caleyi, either as area of occupancy or preferably extent of available habitat, was a moderate predictor of the likely magnitude of abundance in the species after fire. However, the usefulness of these measures for species whose biology is comparable to Grevillea caleyi, will be limited due to factors relating to the degree of species‐specific habitat requirements, local site fire history and the impact of any one fire on resultant post‐fire germination levels. Any assessment of conservation significance will require the interpretation of available information in relation to the ecology of a species.
Basic Residues of the Retroviral Nucleocapsid Play Different Roles in Gag-Gag and Gag-Ψ RNA Interactions
Authors: Lee Eun-Gyung , Linial Maxine L. 
Published: July 2004

ABSTRACT

The
Orthoretrovirus
Gag interaction (I) domain maps to the nucleocapsid (NC) domain in the Gag polyprotein. We used the yeast two-hybrid system to analyze the role of
Alpharetrovirus
NC in Gag-Gag interactions and also examined the efficiency of viral assembly and release in vivo. We could delete either or both of the two Cys-His (CH) boxes without abrogating Gag-Gag interactions. We found that as few as eight clustered basic residues, attached to the C terminus of the spacer peptide separating the capsid (CA) and NC domains in the absence of NC, was sufficient for Gag-Gag interactions. Our results support the idea that a sufficient number of basic residues, rather than the CH boxes, play the important role in Gag multimerization. We also examined the requirement for basic residues in Gag for packaging of specific packaging signal (Ψ)-containing RNA. Using a yeast three-hybrid RNA-protein interaction assay, second-site suppressors of a packaging-defective Gag mutant were isolated, which restored Ψ RNA binding. These suppressors mapped to the p10 or CA domains in Gag and resulted in either introduction of a positively charged residue or elimination of a negatively charged one. These results imply that the structural interactions of NC with other domains of Gag are necessary for Ψ RNA binding. Taken together, our results show that while Gag assembly only requires a certain number of positively charged amino acids, Gag binding to genomic RNA for packaging requires more complex interactions inherent in the protein tertiary structure.
Diverse Hepatitis C Virus Glycoproteins Mediate Viral Infection in a CD81-Dependent Manner
Authors: McKeating J. A. , Zhang L. Q. , Logvinoff C. , Flint M. , Zhang J. , Yu J. , Butera D. , Ho D. D. , Dustin L. B. , Rice C. M. , Balfe P. 
Published: July 2004

ABSTRACT
We recently reported that retroviral pseudotypes bearing the hepatitis C virus (HCV) strain H and Con1 glycoproteins, genotype 1a and 1b, respectively, require CD81 as a coreceptor for virus-cell entry and infection. Soluble truncated E2 cloned from a number of diverse HCV genotypes fail to interact with CD81, suggesting that viruses of diverse origin may utilize different receptors and display altered cell tropism. We have used the pseudotyping system to study the tropism of viruses bearing diverse HCV glycoproteins. Viruses bearing these glycoproteins showed a 150-fold range in infectivity for hepatoma cells and failed to infect lymphoid cells. The level of glycoprotein incorporation into particles varied considerably between strains, generally reflecting the E2 expression level within transfected cells. However, differences in glycoprotein incorporation were not associated with virus infectivity, suggesting that infectivity is not limited by the absolute level of glycoprotein. All HCV pseudotypes failed to infect HepG2 cells and yet infected the same cells after transduction to express human CD81, confirming the critical role of CD81 in HCV infection. Interestingly, these HCV pseudotypes differed in their ability to infect HepG2 cells expressing a panel of CD81 variants, suggesting subtle differences in the interaction of CD81 residues with diverse viral glycoproteins. Our current model of HCV infection suggests that CD81, together with additional unknown liver specific receptor(s), mediate the virus-cell entry process.
Analysis of Integration Sites of Jaagsiekte Sheep Retrovirus in Ovine Pulmonary Adenocarcinoma
Authors: Cousens Christina , Bishop Jeanette V. , Philbey Adrian W. , Gill Clare A. , Palmarini Massimo , Carlson Jonathan O. , DeMartini James C. , Sharp J. Michael 
Published: July 2004

ABSTRACT
Ovine pulmonary adenocarcinoma (OPA) is an infectious lung tumor of sheep caused by Jaagsiekte sheep retrovirus (JSRV). To test the hypothesis that JSRV insertional mutagenesis is involved in the oncogenesis of OPA, we cloned and characterized 70 independent integration sites from 23 cases of OPA. Multiple integration sites were identified in most tumors. BLAST analysis of the sequences did not disclose any potential oncogenic motifs or any identical integration sites in different tumors. Thirty-seven of the integration sites were mapped to individual chromosomes by PCR with a panel of sheep-hamster hybrid cell lines. Integration sites were found on 20 of the 28 sheep chromosomes, suggesting a random distribution. However, four integration sites from four different tumors mapped to chromosome 16. By Southern blot hybridization, probes derived from two of these sites mapped to within 5 kb of each other on normal sheep DNA. These sites were found within a single sheep bacterial artificial chromosome clone and were further mapped to only 2.5 kb apart, within an uncharacterized predicted gene and less than 200 kb from a mitogen-activated protein kinase-encoding gene. These findings suggest that there is at least one common integration site for JSRV in OPA and add weight to the hypothesis that insertional mutagenesis is involved in the development of this tumor.
Effect of Membrane Curvature-Modifying Lipids on Membrane Fusion by Tick-Borne Encephalitis Virus
Authors: Stiasny Karin , Heinz Franz X. 
Published: July 2004

ABSTRACT
Enveloped viruses enter cells by fusion of their own membrane with a cellular membrane. Incorporation of inverted-cone-shaped lipids such as lysophosphatidylcholine (LPC) into the outer leaflet of target membranes has been shown previously to impair fusion mediated by class I viral fusion proteins, e.g., the influenza virus hemagglutinin. It has been suggested that these results provide evidence for the stalk-pore model of fusion, which involves a hemifusion intermediate (stalk) with highly bent outer membrane leaflets. Here, we investigated the effect of inverted-cone-shaped LPCs and the cone-shaped oleic acid (OA) on the membrane fusion activity of a virus with a class II fusion protein, the flavivirus tick-borne encephalitis virus (TBEV). This study included an analysis of lipid mixing, as well as of the steps preceding or accompanying fusion, i.e., binding to the target membrane and lipid-induced conformational changes in the fusion protein E. We show that the presence of LPC in the outer leaflet of target liposomes strongly inhibited TBEV-mediated fusion, whereas OA caused a very slight enhancement, consistent with a fusion mechanism involving a lipid stalk. However, LPC also impaired the low-pH-induced binding of a soluble form of the E protein to liposomes and its conversion into a trimeric postfusion structure that requires membrane binding at low pH. Because inhibition is already observed before the lipid-mixing step, it cannot be determined whether impairment of stalk formation is a contributing factor in the inhibition of fusion by LPC. These data emphasize, however, the importance of the composition of the target membrane in its interactions with the fusion peptide that are crucial for the initiation of fusion.
Caspases Mediate Processing of the Capsid Precursor and Cell Release of Human Astroviruses
Authors: Méndez Ernesto , Salas-Ocampo Elizabeth , Arias Carlos F. 
Published: July 2004

ABSTRACT
In this work we have shown that astrovirus infection induces apoptosis of Caco-2 cells, since fragmentation of cellular DNA, cleavage of cellular proteins which are substrate of activated caspases, and a change in the mitochondrial transmembrane potential occur upon virus infection. The human astrovirus Yuc8 polyprotein capsid precursor VP90 is initially processed to yield VP70, and we have shown that this processing is trypsin independent and occurs intracellularly through four cleavages at its carboxy-terminal region. We further showed that VP90-VP70 processing is mediated by caspases, since it was blocked by the pancaspase inhibitor benzyloxycarbonyl-Val-Ala-Asp fluoromethylketone (z-VAD-fmk), and it was promoted by the apoptosis inducer TNF-related apoptosis-inducing ligand (TRAIL). Although the cell-associated virus produced in the presence of these compounds was not affected, the release of infectious virus to the cell supernatant was drastically reduced in the presence of z-VAD-fmk and increased by TRAIL, indicating that VP90-VP70 cleavage is important for the virus particles to be released from the cell. This is the first report that describes the induction and utilization of caspase activity by a virus to promote processing of the capsid precursor and dissemination of the viral particles.
Baculovirus Vectors Elicit Antigen-Specific Immune Responses in Mice
Authors: Facciabene Andrea , Aurisicchio Luigi , La Monica Nicola 
Published: July 2004

ABSTRACT

To characterize the induction of antigen-specific immune response mediated by baculovirus, vectors expressing the E2 glycoprotein of hepatitis C virus or the carcinoembryonic antigen (CEA) under the control of the cytomegalovirus immediate-early promoter-enhancer were constructed. Additionally, a baculovirus vector encoding the E2 glycoprotein (Bac-G-E2) and expressing vesicular stomatitis virus glycoprotein (VSV-G) in the viral envelope was generated by inserting the VSV-G coding sequence downstream of the polyhedrin promoter. Mice were subjected to intramuscular, intranasal, or subcutaneous inoculations with Bac-E2 and the cellular immune response was monitored by ELISPOT and intracellular staining. Additionally, humoral response was monitored by titrating anti-E2 antibodies. Induction of a measurable anti-E2 T-cell response was observed only after intramuscular injection and was predominantly CD8
+
specific. The immunogenic properties of baculovirus as vaccine vector were not restricted to E2 because a CEA-specific CD4
+
T-cell response was observed upon intramuscular injection of Bac-CEA. Interestingly, the Bac-G-E2 vector was shown to be a more efficient immunogen than Bac-E2, in view of the 10-fold difference in the minimal dose required to elicit a measurable T-cell response upon intramuscular injection. Induction of inflammatory cytokines such as gamma interferon, tumor necrosis factor alpha, and interleukin-6 was detected as early as 6 h postinjection of Bac-G-E2. Most importantly, both vectors elicited CD8
+
T cells with effector function capable of lysing target cells loaded with a hepatitis C virus-specific epitope. Additionally, enhanced NK cytolytic activity was detected in immunized mice. Thus, these results further demonstrate that baculovirus may be considered a useful vector for gene therapy.