bluuebunny/crossref_metadata_2025_split huggingface dataset:
Enhanced anti-tumor activity of transferrin/folate dual-targeting magnetic nanoparticles using chemo-thermo therapy on retinoblastoma cancer cells Y79
Authors: Sadri Elaheh , Khoee Sepideh , Moayeri Samaneh , Haji Ali Bahareh , Pirhajati Mahabadi Vahid , Shirvalilou Sakine , Khoei Samideh 
Published: December 2023

AbstractMalignant neoplasms are one of the main causes of death, especially in children, on a global scale, despite strenuous efforts made at advancing both diagnostic and therapeutic modalities. In this regard, a new nanocarrier Vincristine (VCR)-loaded Pluronic f127 polymer-coated magnetic nanoparticles conjugated with folic acid and transferrin (PMNP-VCR-FA-TF) were synthesized and characterized by various methods. The cytotoxicity of these nanoparticles was evaluated in vitro and ex vivo conditions. The in vitro anti-tumor effect of the nanoparticles was evaluated by colony formation assay (CFA) and reactive oxygen species (ROS) in Y79 cell line. The results showed that nanoparticles with two ligands conferred greater toxicity toward Y79 cancer cells than ARPE19 normal cells. Under an alternating magnetic field (AMF), these nanoparticles demonstrated a high specific absorption rate. The CFA and ROS results indicated that the AMF in combination with PMNP-VCR-FA-TF conferred the highest cytotoxicity toward Y79 cells compared with other groups (P < 0.05). PMNP-VCR-FA-TF could play an important role in converting externally applied radiofrequency energy into heat in cancer cells. The present study confirmed that dual targeting chemo-hyperthermia using PMNP-VCR-FA-TF was significantly more effective than hyperthermia or chemotherapy alone, providing a promising platform for precision drug delivery as an essential component in the chemotherapy of retinoblastoma.
Structural insights into N-terminal methionine cleavage by the human mitochondrial methionine aminopeptidase, MetAP1D
Authors: Lee Yeon , Kim Hayoung , Lee Eunji , Hahn Hyunggu , Heo Yoonyoung , Jang Dong Man , Kwak Kihyuck , Kim Hyo Jung , Kim Hyoun Sook 
Published: December 2023

AbstractIsozymes are enzymes that catalyze identical biological reactions, yet exhibit slight variations in structures and catalytic efficiency, which enables the precise adjustment of metabolism to fulfill the specific requirements of a particular tissue or stage of development. Methionine aminopeptidase (MetAP) isozymes function a critical role in cleaving N-terminal methionine from nascent proteins to generate functional proteins. In humans, two distinct MetAP types I and II have been identified, with type I further categorized into cytosolic (MetAP1) and mitochondrial (MetAP1D) variants. However, despite extensive structural studies on both bacterial and human cytosolic MetAPs, the structural information remains unavailable for human mitochondrial MetAP. This study was aimed to elucidate the high-resolution structures of human mitochondrial MetAP1D in its apo-, cobalt-, and methionine-bound states. Through a comprehensive analysis of the determined structures and a docking simulation model with mitochondrial substrate peptides, we present mechanistic insights into the cleavage process of the initiator methionine from mitochondrial proteins. Notably, despite the shared features at the active site between the cytosolic and mitochondrial MetAP type I isozymes, we identified distinct structural disparities within the active-site pocket primarily contributed by two specific loops that could play a role in accommodating specific substrates. These structural insights offer a basis for the further exploration of MetAP isozymes as critical players in cellular processes and potential therapeutic applications.
Clinical significance of polymorphisms of genes encoding collagen (COL1A1, COL5A1) and their correlation with joint laxity and recurrent patellar dislocation in adolescents
Authors: Małecki Krzysztof , Fabiś-Strobin Anna , Sałacińska Kinga , Kwas Katarzyna , Stelmach Wojciech , Beczkowski Jacek , Niedzielski Kryspin , Gach Agnieszka 
Published: December 2023

AbstractThe aim of this study was to assess the coexistence of polymorphisms of the COL1A1 and COL5A1 genes with clinically diagnosed laxity and the occurrence of recurrent patellar dislocation in adolescents. The research group comprised 50 cases of recurrent patellar dislocation. The mean age at diagnosis was 14.2 years (10–17, SD 2.6). The control group consisted of 199 participants without a diagnosis of recurrent patellar dislocation, with a mean age of 15.2 (10–17 years, SD 2.7). Joint laxity by the Beighton scale was assessed. Analysis of the allele distribution of the analysed genes COL1A1 and COL5A1 revealed no statistically significant difference between the study group and the control group (p = 0.859 and p = 0.205, respectively). Analysis of the Beighton score showed a statistically significantly higher result in the study group than in the control group (p < 0.001). No correlation between the presence of polymorphisms and joint laxity diagnosis was confirmed. In conclusion, COL1A1 and COL5A1 gene polymorphisms are not significantly more common in adolescents with recurrent patellar dislocation than in healthy peers; there is also no correlation between joint laxity and polymorphisms of the COL1A1 and COL5A1 genes.Registered on ClinicalTrials.gov with ID: PMMHRI-2021.2/1/7-GW.
Acoustic characterization for creep behaviors of marine sandy hydrate-bearing sediment
Authors: Li Yanlong , Hu Qiaobo , Wu Nengyou , Wang Hongbin , Sun Xiaofeng , Hu Gaowei , Sun Zhiwen , Jiang Yujing 
Published: December 2023

AbstractMarine natural gas hydrate (NGH) is a promising substitutive low-carbon energy resource, whereas NGH-production induced geoengineering concerns remain challenging. Advanced forecast of possible geoengineering risks is the fundamental for eco-friendly NGH exploitation. Reservoir creep deformation is an early symptom of the geoengineering risks. However, whether the creep deformation behaviors of the NGH-bearing strata is predictable remains controversial. In this study, a series of multi-step loading creep test are conducted for sandy gas hydrate bearing sediment (GHBS) samples, during which the ultrasonic responses are recorded simultaneously. The acoustic velocity, compression-to-shear velocity ratio, Poission’s ratio, main frequency, and main frequency amplitude are used to characterize creep failures of the GHBS for the first time. Combining analyses of the creep behaviors and acoustic responses yield the following conclusions. Firstly, the long-term strength derived from creeping test is 0.45–0.60 times of the shear strength derived from triaxial shearing. Ignoring the creep effect might underestimate the scale and intensity of possible geoengineering risks during long-term NGH exploitation. Secondly, the acoustic velocity increases gently and then decreases continuously during creeping. Once the accelerated creep appears, the acoustic velocity plummets significantly, together with a sudden decrease in the compression-to-shear velocity ratio, and fluctuations in the main frequency and its amplitude. Furthermore, the main frequency and its amplitude shall fluctuate abruptly prior to the emergence of the accelerated creep. Therefore, we anticipate that the combination of abnormal fluctuations of main frequency and its amplitude can be used as early-warning indicators for possible creep failure of the GHBS. The results might have great significance for in-situ detection and prediction of possible reservoir failure during long-term NGH exploitation.
Structural definition of babesial RAP-1 proteins identifies a novel protein superfamily across Apicomplexa
Authors: Hötzel Isidro , Suarez Carlos E. 
Published: December 2023

AbstractApicomplexan protozoa are intracellular parasites of medical and economic importance. These parasites contain specialized apical complex organelles, including rhoptries, that participate in the process of host cell invasion. Conserved antigens expressed in the rhoptries are rational vaccine targets, but whether conservation of protein structure is a functional requirement for invasion remains unknown. Novel protein structural modeling enables identification of structurally conserved protein families that are not evident by sequence analysis alone. Here we show by AlphaFold2 structural modeling that the rhoptry-associated protein 1 superfamily of the Piroplasmida hemoparasites Babesia and Theileria (pRAP-1) is structurally conserved, with the core conserved region being composed of a globin-like and a 4-helix bundle subdomain. Search for structurally related members of this protein family in other apicomplexan parasites revealed structural homologues of pRAP-1 in several species of Plasmodium, Toxoplasma gondii and other members of the Sarcocystidae family. Based on these structural findings, pRAP-1 is a conserved apical complex protein, but whether these proteins share functional features in different species remains unknown. Identification of widely conserved elements involved in infection in these parasites will enhance our knowledge of invasion mechanisms, and facilitate the design of methods for controlling diseases that affect humans and animals globally.
Digitalization enhancement in the pharmaceutical supply network using a supply chain risk management approach
Authors: Wong Wai Peng , Saw Pui San , Jomthanachai Suriyan , Wang Leong Seng , Ong Huey Fang , Lim Chee Peng 
Published: December 2023

AbstractOne major issue in pharmaceutical supply chain management is the supply shortage, and determining the root causes of medicine shortages necessitates an in-depth investigation. The concept of risk management is proposed in this study to identify significant risk factors in the pharmaceutical supply chain. Fuzzy failure mode and effect analysis and data envelopment analysis were used to evaluate the risks of the pharmaceutical supply chain. Based on a case study on the Malaysian pharmaceutical supply chain, it reveals that the pharmacy node is the riskiest link. The unavailability of medicine due to unexpected demand, as well as the scarcity of specialty or substitute drugs, pose the most significant risk factors. These risks could be mitigated by digital technology. We propose an appropriate digital technology platform consisting of big data analytics and blockchain technologies to undertake these challenges of supply shortage. By addressing risk factors through the implementation of a digitalized supply chain, organizations can fortify their supply networks, fostering resilience and efficiency, and thereby playing a pivotal role in advancing the Pharma 4.0 era.
Myeloid deletion of talin-1 reduces mucosal macrophages and protects mice from colonic inflammation
Authors: Latour Yvonne L. , McNamara Kara M. , Allaman Margaret M. , Barry Daniel P. , Smith Thaddeus M. , Asim Mohammad , Williams Kamery J. , Hawkins Caroline V. , Jacobse Justin , Goettel Jeremy A. , Delgado Alberto G. , Piazuelo M. Blanca , Washington M. Kay , Gobert Alain P. , Wilson Keith T. 
Published: December 2023

AbstractThe intestinal immune response is crucial in maintaining a healthy gut, but the enhanced migration of macrophages in response to pathogens is a major contributor to disease pathogenesis. Integrins are ubiquitously expressed cellular receptors that are highly involved in immune cell adhesion to endothelial cells while in the circulation and help facilitate extravasation into tissues. Here we show that specific deletion of the Tln1 gene encoding the protein talin-1, an integrin-activating scaffold protein, from cells of the myeloid lineage using the Lyz2-cre driver mouse reduces epithelial damage, attenuates colitis, downregulates the expression of macrophage markers, decreases the number of differentiated colonic mucosal macrophages, and diminishes the presence of CD68-positive cells in the colonic mucosa of mice infected with the enteric pathogen Citrobacter rodentium. Bone marrow-derived macrophages lacking expression of Tln1 did not exhibit a cell-autonomous phenotype; there was no impaired proinflammatory gene expression, nitric oxide production, phagocytic ability, or surface expression of CD11b, CD86, or major histocompatibility complex II in response to C. rodentium. Thus, we demonstrate that talin-1 plays a role in the manifestation of infectious colitis by increasing mucosal macrophages, with an effect that is independent of macrophage activation.
The impact of wind energy on plant biomass production in China
Authors: Gao Li , Wu Qingyang , Qiu Jixiang , Mei Yingdan , Yao Yiran , Meng Lina , Liu Pengfei 
Published: December 2023

AbstractGlobal wind power expansion raises concerns about its potential impact on plant biomass production (PBP). Using a high-dimensional fixed effects model, this study reveals significant PBP reduction due to wind farm construction based on 2404 wind farms, 108,361 wind turbines, and 7,904,352 PBP observations during 2000–2022 in China. Within a 1–10 km buffer, the normalized differential vegetation and enhanced vegetation indices decrease from 0.0097 to 0.0045 and 0.0075 to 0.0028, respectively. Similarly, absorbed photosynthetically active radiation and gross primary productivity decline from 0.0094 to 0.0034% and 0.0003–0.0002 g*C/m2 within a 1–7 km buffer. Adverse effects last over three years, magnified in summer and autumn, and are more pronounced at lower altitudes and in plains. Forest carbon sinks decrease by 12,034 tons within a 0–20 km radius, causing an average economic loss of $1.81 million per wind farm. Our findings underscore the balanced mitigation strategies for renewable energy transition when transiting from fossil fuels.
Numerical study on the hydrodynamic performance and internal flow of an axial-flow pump with various inlet flow angles
Authors: Son Yong-Jin , Kim Yong-In , Yang Hyeon-Mo , Lee Kyoung-Yong , Yoon Joon Yong , Choi Young-Seok 
Published: December 2023

AbstractIn this study, numerical simulation was employed to predict the performance and internal flow characteristics of the inlet of an axial-flow pump by assigning an absolute flow angle to the inlet guide vane (IGV) trailing-edge flow. Further, the finite volume method based on the three-dimensional Reynolds-averaged Navier–Stokes equations was employed to discretize the governing equations. The shear stress transport model was used as the turbulence model, and an appropriate number of nodes were selected for the hexahedral grid system through a grid-dependency test. The performance curve and changes in the internal flow field were investigated based on the variation in the flow angle at the inlet of the axial-flow pump. These results can be used to establish an efficient operational plan by adjusting the IGV angle of IGV when installing a variable IGV for an axial-flow pump.
Increased habitat segregation at the dawn of the Phanerozoic revealed by correspondence analysis of bioturbation
Authors: Meek Dean M. , Buatois Luis A. , Mángano M. Gabriela , Eglington Bruce M. 
Published: December 2023

AbstractThe Agronomic Revolution of the early Cambrian refers to the most significant re-structuration of the benthic marine ecosystem in life history. Using a global compilation of trace-fossil records across the Ediacaran-Cambrian transition, this paper investigates the relationship between the benthos and depositional environments prior to, during, and after the Agronomic Revolution to shed light on habitat segregation via correspondence analysis. The results of this analysis characterize Ediacaran mobile benthic bilaterians as facies-crossing and opportunistic, with low levels of habitat specialization. In contrast, the Terreneuvian and Cambrian Series 2 reveal progressive habitat segregation, parallel to matground environmental restriction. This event was conducive to the establishment of distinct endobenthic communities along the marine depositional profile, showing that the increase in styles of animal-substrate interactions was expressed by both alpha and beta ichnodiversity. Habitat segregation at the dawn of the Phanerozoic may illustrate an early extension of the trophic group amensalism at community scale.
Sustained participation in a Payments for Ecosystem Services program reduces deforestation in a Mexican agricultural frontier
Authors: Charoud Hugo , Costedoat Sebastien , Izquierdo-Tort Santiago , Moros Lina , Villamayor-Tomás Sergio , Castillo-Santiago Miguel Ángel , Wunder Sven , Corbera Esteve 
Published: December 2023

AbstractPayments for Ecosystem Services (PES) provide conditional incentives for forest conservation. PES short-term effects on deforestation are well-documented, but we know less about program effectiveness when participation is sustained over time. Here, we assess the impact of consecutive renewals of PES contracts on deforestation and forest degradation in three municipalities of the Selva Lacandona (Chiapas, Mexico). PES reduced deforestation both after a single 5-year contract and after two consecutive contracts, but the impacts are only detectable in higher deforestation-risk parcels. Enrollment duration increases PES impact in these parcels, which suggests a positive cumulative effect over time. These findings suggest that improved spatial targeting and longer-term enrollment are key enabling factors to improve forest conservation outcomes in agricultural frontiers.
CuO nanoparticles mixed with activated BC extracted from algae as promising material for supercapacitor electrodes
Authors: Ahmed Alsharif Marwah , Alatawi Aishah , Hamdalla Taymour A. , Alfadhli S. , Darwish A. A. A. 
Published: December 2023

AbstractThe present analysis aims to use existing resources to lower the cost of electrodes and reduce environmental pollution by utilizing waste materials like green algae. In the present research, the hydrothermal carbonization technique was utilized to synthesize a nano sized CuO mixed with activated biochar (CuO@BC) extracted from red sea algae (Chlorophyta). The CuO@BC sample was extensively examined using several advanced physical techniques, such as UV/Visible spectroscopy, FTIR, XED, HRTEM, SEM, EDX, BET, and TGA. The HRTEM indicated that the size of the particles is 32 nm with a larger surface area and without aggregations. The BET analysis of CuO@BC indicates that the material contains pores of a relatively large size and with a pore diameter of about 42.56 A°. The electrochemical analysis of CuO@BC modified glassy carbon electrode CuO@BC/GCE has been investigated using CV, GCD, and EIS techniques. This CuO@BC/GCE shows excellent electrochemical features that are significant for energy storage applications. The CuO@BC/GCE showed a specific capacitance of approximately 353 Fg−1 which is higher compared to individual materials. Overall, the research outcomes suggest that the CuO@BC/GCE shows potential for use in high-performance supercapacitors as energy storage systems that are eco-friendly and sustainable.
Acceptance sampling plan based on difference in difference estimator with application
Authors: Azam Muhammad , Khan Maira Ahsan , Arshad Asma , Saleem Muhammad , Aslam Muhammad 
Published: December 2023

AbstractAn acceptance sampling plan has been designed in this study based on the Difference-in-Difference estimator. This plan is designed for the inspection of those product units whose life follows the normal distribution. The operating characteristic function is discussed for the two respective cases of the standard deviation known and unknown. The parameters of the proposed plan are determined by minimizing the sample size and followed by the satisfying optimization rule. The results are computed and tabulated for various parametric combinations of acceptable quality levels and limiting quality levels. The computations are performed by using R statistical programming software for all respective cases. The real-life application of the proposed sampling plan has been discussed and elaborated in detail.
CT texture features and lung shunt fraction measured using 99mTc-macroaggregated albumin SPECT/CT before trans-arterial radioembolization for hepatocellular carcinoma patients
Authors: Lee Jae Hwan , Lee Chong-ho , Kim Minuk , Song Yoo Sung , Yoon Chang Jin , Lee Won Woo 
Published: December 2023

AbstractThe aim of this study is to determine whether contrast-enhanced computed tomography (CECT)-based texture parameters can predict high (> 30 Gy) expected lung dose (ELD) calculated using 99mTc macroaggregated albumin single-photon emission computed tomography/computed tomography (SPECT/CT) for pre-trans-arterial radioembolization (TARE) dosimetry. 35 patients were analyzed, with a treatable planned dose of ≥ 200 Gy for unresectable hepatocellular carcinoma (HCC). Lung shunt fraction (LSF) was obtained from planar and SPECT/CT scans. Texture features of the tumor lesion on CECT before TARE were analyzed. Univariate and multivariate linear regression analyses were performed to determine potential ELD > 30 Gy predictors. Among the 35 patients, nine (25.7%) had ELD > 30 Gy, and had a higher LSF than the ELD ≤ 30 Gy group using the planar (20.7 ± 8.0% vs. 6.3 ± 3.3%; P < 0.001) and SPECT/CT (12.4 ± 5.1% vs. 3.5 ± 2.0%; P < 0.001) scans. The tumor integral total (HU × L) value was a predictor for high LSF using SPECT/CT, with an area under the curve, sensitivity, and specificity of 0.983 (95% confidence interval: 0.869–1.000, P < 0.001), 100%, and 88.5%, respectively. The tumor integral total value is an imaging marker for predicting ELD > 30 Gy. Applying CECT texture analysis may assist in reducing time and cost in patient selection and modifying TARE treatment plans.
Evolution of the Araliaceae family involved rapid diversification of the Asian Palmate group and Hydrocotyle specific mutational pressure
Authors: Kang Jong-Soo , Giang Vo Ngoc Linh , Park Hyun-Seung , Park Young Sang , Cho Woohyeon , Nguyen Van Binh , Shim Hyeonah , Waminal Nomar Espinosa , Park Jee Young , Kim Hyun Hee , Yang Tae-Jin 
Published: December 2023

AbstractThe Araliaceae contain many valuable species in medicinal and industrial aspects. We performed intensive phylogenomics using the plastid genome (plastome) and 45S nuclear ribosomal DNA sequences. A total of 66 plastome sequences were used, 13 of which were newly assembled in this study, 12 from new sequences, and one from existing data. While Araliaceae plastomes showed conserved genome structure, phylogenetic reconstructions based on four different plastome datasets revealed phylogenetic discordance within the Asian Palmate group. The divergence time estimation revealed that splits in two Araliaceae subfamilies and the clades exhibiting phylogenetic discordances in the Asian Palmate group occurred at two climatic optima, suggesting that global warming events triggered species divergence, particularly the rapid diversification of the Asian Palmate group during the Middle Miocene. Nucleotide substitution analyses indicated that the Hydrocotyloideae plastomes have undergone accelerated AT-biased mutations (C-to-T transitions) compared with the Aralioideae plastomes, and the acceleration may occur in their mitochondrial and nuclear genomes as well. This implies that members of the genus Hydrocotyle, the only aquatic plants in the Araliaceae, have experienced a distinct evolutionary history from the other species. We also discussed the intercontinental disjunction in the genus Panax and proposed a hypothesis to complement the previously proposed hypothesis. Our results provide the evolutionary trajectory of Araliaceae and advance our current understanding of the evolution of Araliaceae species.