bluuebunny/crossref_metadata_2025_split huggingface dataset:
A stacked record of relative palaeointensity for past 500 ka from western equatorial Indian Ocean sediments
Authors: Chen Liang , Zhou Liang , Liu Jiabo , Yin Zhengxin , Zhang Jianli , Guan Yulong , Chen Long , Zhang Yuzhen , Hu Yuewei , Liu Yang , Jiang Zhaoxia 
Published: October 2023

SUMMARY
Relative palaeointensity (RPI) records can reflect the evolution of the Earth's axial dipole field and provide a suitable template for global stratigraphic correlation. Current RPI records are primarily obtained from the Atlantic and Pacific Oceans, particularly in the mid-latitudes of the Northern Hemisphere. Fewer RPI records originate from the Indian Ocean, particularly in low latitude areas, which limits sediment dating and geomagnetic evolution studies in these regions. In this study, we conduct a palaeomagnetic study on four sediment cores recovered from the western equatorial Indian Ocean (WEIO) to establish a new regional RPI stack from the past 500 ka for the global coverage of palaeointensity data, as well as a regional reference for palaeointensity-assisted stratigraphy. To estimate the RPI, the isothermal remanent magnetization is used as a normalizer. A chronological framework is constructed by correlating RPI records and environmental magnetic parameters (anhysteretic remanent magnetizationsaturation/isothermal remanent magnetization, ARM/SIRM) with PISO-1500 and LR04 δ18O curves, respectively. Our RPI stacked curve (WEIO-500) varies according to global and other regional high-resolution records. The five lows in the obtained RPI curve can be correlated with previously reported excursions. In addition, the mean inclination direction of each core is similar to the expected hypothetical geocentric axial dipole direction, with a negative inclination anomaly (mean ΔI) of −2.18° to −4.86°. The low mean ΔI and its reproducibility reflect the reliability of our chronological framework and stacked curve, thereby providing a new reference for correlating and calibrating RPI records from WEIO as well as other equatorial areas.
Hepatitis C Treatment in People With HIV: Potential to Eliminate Disease and Disparity
Authors: Falade-Nwulia Oluwaseun , Lesko Catherine R , Fojo Anthony T , Keruly Jeanne C , Moore Richard D , Sutcliffe Catherine G , Mehta Shruti H , Chander Geetanjali , Thomas David L , Sulkowski Mark 
Published: October 2023

Abstract
Access to direct acting antivirals (DAAs) may be associated with reductions in hepatitis C virus (HCV) viremia prevalence among people with human immunodeficiency virus (PWH). Among 3755 PWH, estimated HCV viremia prevalence decreased by 94.0% from 36% (95% confidence interval [CI], 27%–46%) in 2009 (pre-DAA era) to 2% (95% CI, 0%–4%) in 2021 (DAA era). Male sex, black race, and older age were associated with HCV viremia in 2009 but not in 2021. Injection drug use remained associated with HCV viremia in 2009 and 2021. Targeted interventions are needed to meet the HCV care needs of PWH who use drugs.
Parthenogenesis affects interspecific competition between Megalurothrips usitatus and Frankliniella intonsa (Thysanoptera: Thripidae) in changing environment: evidence from life table study
Authors: Guo Ling-Hang , Wu Sheng-Yong , Gong Run-Na , Tang Liang-De 
Published: October 2023

Abstract
The thrips Megalurothrips usitatus Bagnall and Frankliniella intonsa Trybom (Thysanoptera: Thripidae) are important pests in cowpea-growing areas of south China. Parthenogenesis is an important reproductive form of thysanopterans, and plays an important role in maintaining population growth. To understand the developmental and reproductive characteristics of these 2 thrips species during parthenogenesis, we compared the age–stage life tables of M. usitatus and F. intonsa on cowpea pods under natural regimes during the summer and winter. The results showed that the total preadult period and total preoviposition period of M. usitatus were significantly longer than those of F. intonsa in both seasons. Moreover, longevity of adult M. usitatus (29.53 days) was shorter compared with adult F. intonsa (34.00 days) in summer, whereas higher fecundity (220.8 eggs/female) and more oviposition days (37.83 days) were observed in M. usitatus compared with F. intonsa in winter (fecundity = 179.83 eggs/female, oviposition days = 33.03 days). The net and gross reproductive rates of M. usitatus were significantly greater than those of F. intonsa during winter. In addition, the intrinsic and finite rates of increase of M. usitatus were significantly lower than those of F. intonsa, and the mean generation time of M. usitatus was significantly longer than that of F. intonsa both in summer and winter. These results indicated that parthenogenesis has species specificity among thrips, which in turn affects population development, especially under changing environments.
Urban regeneration projects and crime: evidence from Glasgow
Authors: Borbely Daniel , Rossi Gennaro 
Published: October 2023

Abstract
This study investigates the effects of urban regeneration on crime, leveraging recent large-scale regeneration projects—called Transformational Regeneration Areas (TRAs)—in Glasgow, Scotland. We employ a difference-in-differences approach that makes use of variation in both the timing of TRA implementation, and in proximity to these areas to measure exposure to urban regeneration projects. We find a large and significant reduction in crime within 400 m of TRAs but this effect fades as we move further away. Simultaneously, we find no evidence of city-wide reductions in crime after urban regeneration.
Reference genome for the Northern bat (Eptesicus nilssonii), a most northern bat species
Authors: Laine Veronika N , Pulliainen Arto T , Lilley Thomas M 
Published: October 2023

Abstract
The northern bat (Eptesicus nilssonii) is the most northern bat species in the world. Its distribution covers whole Eurasia, and the species is thus well adapted to different habitat types. However, recent population declines have been reported and rapid conservation efforts are needed. Here we present a high-quality de novo genome assembly of a female northern bat from Finland (BLF_Eptnil_asm_v1.0). The assembly was generated using a combination of Pacbio and Omni-C technologies. The primary assembly comprises 726 scaffolds spanning 2.0 Gb, represented by a scaffold N50 of 102 Mb, a contig N50 of 66.2 Mb, and a BUSCO completeness score of 93.73%. Annotation of the assembly identified 20,250 genes. This genome will be an important resource for the conservation and evolutionary genomic studies especially in understanding how rapid environmental changes affect northern species.
Bacteria- and fungus-derived PAMPs induce innate immune memory via similar functional, metabolic, and transcriptional adaptations
Authors: McBride Margaret A , Stothers Cody L , Fensterheim Benjamin A , Caja Katherine R , Owen Allison M , Hernandez Antonio , Bohannon Julia K , Patil Naeem K , Ali Sabah , Dalal Sujata , Rahim Mohsin , Trenary Irina A , Young Jamey D , Williams David L , Sherwood Edward R 
Published: October 2023

Abstract
Exposure to pathogen-associated molecular patterns (PAMPs) induces an augmented, broad-spectrum antimicrobial response to subsequent infection, a phenomenon termed innate immune memory. This study examined the effects of treatment with β-glucan, a fungus-derived dectin-1 ligand, or monophosphoryl lipid A (MPLA), a bacteria-derived Toll-like receptor 4 ligand, on innate immune memory with a focus on identifying common cellular and molecular pathways activated by these diverse PAMPs. Treatment with either PAMP prepared the innate immune system to respond more robustly to Pseudomonas aeruginosa infection in vivo by facilitating mobilization of innate leukocytes into blood, recruitment of leukocytes to the site of infection, augmentation of microbial clearance, and attenuation of cytokine production. Examination of macrophages ex vivo showed amplification of metabolism, phagocytosis, and respiratory burst after treatment with either agent, although MPLA more robustly augmented these activities and more effectively facilitated killing of bacteria. Both agents activated gene expression pathways in macrophages that control inflammation, antimicrobial functions, and protein synthesis and suppressed pathways regulating cell division. β-glucan treatment minimally altered macrophage differential gene expression in response to lipopolysaccharide (LPS) challenge, whereas MPLA attenuated the magnitude of the LPS-induced transcriptional response, especially cytokine gene expression. These results show that β-glucan and MPLA similarly augment the innate response to infection in vivo. Yet, MPLA more potently induces alterations in macrophage metabolism, antimicrobial functions, gene transcription and the response to LPS.
C9orf72 proline-arginine dipeptide repeats disrupt the proteasome and perturb proteolytic activities
Authors: Zhang Yifan , Nelson Sophia C K , Viera Ortiz Ashley P , Lee Edward B , Fairman Robert 
Published: October 2023

Abstract
The hexanucleotide G4C2 repeat expansion in C9orf72 is the most frequent genetic cause of familial amyotrophic lateral sclerosis (ALS). Aberrant translation of this hexanucleotide sequence leads to production of 5 dipeptide repeats (DPRs). One of these DPRs is proline-arginine (polyPR), which is found in C9orf72-expanded ALS (C9ALS) patient brain tissue and is neurotoxic across multiple model systems. PolyPR was previously reported to bind and impair proteasomes in vitro. Nevertheless, the clinical relevance of the polyPR-proteasome interaction and its functional consequences in vivo are yet to be established. Here, we aim to confirm and functionally characterize polyPR-induced impairment of proteolysis in C9ALS patient tissue and an in vivo model system. Confocal microscopy and immunofluorescence studies on both human and Drosophila melanogaster brain tissues revealed sequestration of proteasomes by polyPR into inclusion-like bodies. Co-immunoprecipitation in D. melanogaster showed that polyPR strongly binds to the proteasome. In vivo, functional evidence for proteasome impairment is further shown by the accumulation of ubiquitinated proteins along with lysosomal accumulation and hyper-acidification, which can be rescued by a small-molecule proteasomal enhancer. Together, we provide the first clinical report of polyPR-proteasome interactions and offer in vivo evidence proposing polyPR-induced proteolytic dysfunction as a pathogenic mechanism in C9ALS.
Exogenous enzyme addition affects litter decomposition by altering the microbial community and litter nutrient content in planted forest
Authors: Nie Huayue , Wang Chenrui , Tian Meirong , Gao Jixi 
Published: October 2023

Abstract
Litter inputs have great impacts on the soil properties and ecosystem functioning in forests. Rapid litter decomposition leads to decreases in planted forest agricultural waste and enhances the nutrient cycle in forests. The breakdown of litter and the release of various components depend heavily on enzymes. However, the effects of exogenous enzyme preparations on litter decomposition have been hardly investigated. In this study, we examined how these enzymes affected the remaining rate of litter quality, nutrient content (C, N, K), and microbial community diversity. Taking Eriobotrya japonica litter as the research object, five exogenous enzymes (laccase, lignin peroxidase, leucine arylamidase, cellulase, and acid phosphatase) were applied to litter leaves. The mass remaining rate and main nutrient content of the litter were measured during the decomposition period. The microbial diversity attached to the surface of the litter was determined after decomposition at constant temperature and humidity for 189 days. Application of laccase and lignin peroxidase increased litter degradation by affecting microbial diversity, N and K contents. Addition of leucine arylamidase leaded to an increase in N content, and decreased the quality of the litter. The cellulose and lignin decomposition rate in litters was unaffected by the addition of cellulase, laccase, and lignin peroxidase. These results indicate that exogenous addition of enzymes may alter the nutrient content and microbial community, thus affecting litter decomposition. It is imperative to investigate the effects and mechanisms of exogenous enzymes on litter decomposition for regulating decomposition of agricultural waste litter.
Antibiofilm activity of promethazine, deferiprone, and Manuka honey in an ex vivo wound model
Authors: Guedes Gláucia Morgana de Melo , Freitas Alyne Soares , Pinheiro Rodrigo Machado , Pereira Vinicius Carvalho , Melgarejo Carliane Melo Alves , de Araujo Emanuela Silva , Ribeiro Késia Veras Costa , Bandeira Silviane Praciano , Cordeiro Rossana de Aguiar , Rocha Marcos Fábio Gadelha , Sidrim José Júlio Costa , Castelo-Branco Débora de Souza Collares Maia 
Published: October 2023

Abstract
This study evaluated the antibiofilm activity of promethazine, deferiprone, and Manuka honey against Staphylococcus aureus and Pseudomonas aeruginosa in vitro and ex vivo in a wound model on porcine skin. The minimum inhibitory concentrations (MICs) and the effects of the compounds on biofilms were evaluated. Then, counting colony-forming units (CFUs) and confocal microscopy were performed on biofilms cultivated on porcine skin for evaluation of the compounds. For promethazine, MICs ranging from 97.66 to 781.25 µg/ml and minimum biofilm eradication concentration (MBEC) values ranging from 195.31 to 1562.5 µg/ml were found. In addition to reducing the biomass of both species’ biofilms. As for deferiprone, the MICs were 512 and &gt;1024 µg/ml, the MBECs were ≥1024 µg/ml, and it reduced the biomass of biofilms. Manuka honey had MICs of 10%–40%, MBECs of 20 to &gt;40% and reduced the biomass of S. aureus biofilms only. Concerning the analyses in the ex vivo model, the compounds reduced (P &lt; .05) CFU counts for both bacterial species, altering the biofilm architecture. The action of the compounds on biofilms in in vitro and ex vivo tests raises the possibility of using them against biofilm-associated wounds. However, further studies are needed to characterize the mechanisms of action and their effectiveness on biofilms in vivo.
Calculated Stark widths of the triply charged argon ion Ar iv
Authors: Mahmoudi Walid F , Abu El Maati Lamia , Ben Nessib Nabil , Sahal-Bréchot Sylvie , Dimitrijević Milan S 
Published: October 2023

ABSTRACT
In this work we studied the Stark widths of Ar iv ion which are important for modelling atmosphere of some particular stars. Using semiclassical perturbation and modified semi-empirical approach, we present in this work Stark widths of triply ionized argon Ar iv spectral lines which will be implemented in the STARK-B data base. Energy levels and oscillator strengths needed as input for Stark width calculations were obtained from the atomic structure data base TOPbase. If we need to interpolate these Stark widths at different temperatures for the studied transitions of Ar iv, we use a simple and accurate fitting formula based on a least-squares method. The calculated values were compared to the existing experimental and calculated Stark width values.
A multimessenger model for neutron star–black hole mergers
Authors: Gompertz B P , Nicholl M , Smith J C , Harisankar S , Pratten G , Schmidt P , Smith G P 
Published: October 2023

ABSTRACT
We present a semi-analytic model for predicting kilonova light curves from the mergers of neutron stars with black holes (NSBH). The model is integrated into the mosfit platform, and can generate light curves from input binary properties and nuclear equation-of-state considerations, or incorporate measurements from gravitational wave (GW) detectors to perform multimessenger parameter estimation. The rapid framework enables the generation of NSBH kilonova distributions from binary populations, light curve predictions from GW data, and statistically meaningful comparisons with an equivalent binary neutron star (BNS) model in mosfit. We investigate a sample of kilonova candidates associated with cosmological short gamma-ray bursts, and demonstrate that they are broadly consistent with being driven by NSBH systems, though most have limited data. We also perform fits to the very well sampled GW170817, and show that the inability of an NSBH merger to produce lanthanide-poor ejecta results in a significant underestimate of the early (≲2 d) optical emission. Our model indicates that NSBH-driven kilonovae may peak up to a week after merger at optical wavelengths for some observer angles. This demonstrates the need for early coverage of emergent kilonovae in cases where the GW signal is either ambiguous or absent; they likely cannot be distinguished from BNS mergers by the light curves alone from ∼2 d after the merger. We also discuss the detectability of our model kilonovae with the Vera C. Rubin Observatory’s Legacy Survey of Space and Time (LSST).
Analysis of the impact of broad absorption lines on quasar redshift measurements with synthetic observations
Authors: García Luz Ángela , Martini Paul , Gonzalez-Morales Alma X , Font-Ribera Andreu , Herrera-Alcantar Hiram K , Aguilar Jessica Nicole , Ahlen Steve , Brooks David , de la Macorra Axel , Doel Peter , Forero-Romero Jaime E , Guy Julien , Kisner Theodore , Landriau Martin , Miquel Ramon , Moustakas John , Nie Jundan , Poppett Claire , Tarlé Gregory , Zhou Zhimin 
Published: October 2023

ABSTRACT
Accurate quasar classifications and redshift measurements are increasingly important to precision cosmology experiments. Broad absorption line (BAL) features are present in 15–20 per cent of all quasars, and these features can introduce systematic redshift errors, and in extreme cases produce misclassifications. We quantitatively investigate the impact of BAL features on quasar classifications and redshift measurements with synthetic spectra that were designed to match observations by the Dark Energy Spectroscopic Instrument (DESI) survey. Over the course of 5 yr, DESI aims to measure spectra for 40 million galaxies and quasars, including nearly three million quasars. Our synthetic quasar spectra match the signal-to-noise ratio and redshift distributions of the first year of DESI observations, and include the same synthetic quasar spectra both with and without BAL features. We demonstrate that masking the locations of the BAL features decreases the redshift errors by about 1 per cent and reduces the number of catastrophic redshift errors by about 80 per cent. We conclude that identifying and masking BAL troughs should be a standard part of the redshift determination step for DESI and other large-scale spectroscopic surveys of quasars.
When the well runs dry: modelling environmental quenching of high-mass satellites in massive clusters at z ≳ 1
Authors: Baxter Devontae C , Cooper M C , Balogh Michael L , Rudnick Gregory H , De Lucia Gabriella , Demarco Ricardo , Finoguenov Alexis , Forrest Ben , Muzzin Adam , Reeves Andrew M M , Sarron Florian , Vulcani Benedetta , Wilson Gillian , Zaritsky Dennis 
Published: October 2023

ABSTRACT
We explore models of massive (&gt;1010 M⊙) satellite quenching in massive clusters at z ≳ 1 using an MCMC framework, focusing on two primary parameters: Rquench (the host-centric radius at which quenching begins) and τquench (the time-scale upon which a satellite quenches after crossing Rquench). Our MCMC analysis shows two local maxima in the 1D posterior probability distribution of Rquench at approximately 0.25 and 1.0 R200. Analysing four distinct solutions in the τquench–Rquench parameter space, nearly all of which yield quiescent fractions consistent with observational data from the GOGREEN survey, we investigate whether these solutions represent distinct quenching pathways and find that they can be separated between ‘starvation’ and ‘core quenching’ scenarios. The starvation pathway is characterized by quenching time-scales that are roughly consistent with the total cold gas (H2 + H i) depletion time-scale at intermediate z, while core quenching is characterized by satellites with relatively high line-of-sight velocities that quench on short time-scales (∼0.25 Gyr) after reaching the inner region of the cluster (&lt;0.30 R200). Lastly, we break the degeneracy between these solutions by comparing the observed properties of transition galaxies from the GOGREEN survey. We conclude that only the ‘starvation’ pathway is consistent with the projected phase-space distribution and relative abundance of transition galaxies at z ∼ 1. However, we acknowledge that ram pressure might contribute as a secondary quenching mechanism.
Binaries drive high Type Ia supernova rates in dwarf galaxies
Authors: Johnson James W , Kochanek Christopher S , Stanek K Z 
Published: October 2023

ABSTRACT
The scaling of the specific Type Ia supernova (SN Ia) rate with host galaxy stellar mass $\dot{\text{N}}_\text{Ia} / \text{M}_\star \sim \text{M}_\star ^{-0.3}$ as measured in ASAS-SN and DES strongly suggests that the number of SNe Ia produced by a stellar population depends inversely on its metallicity. We estimate the strength of the required metallicity dependence by combining the average star formation histories (SFHs) of galaxies as a function of their stellar mass with the mass–metallicity relation (MZR) for galaxies and common parametrizations for the SN Ia delay-time distribution. The differences in SFHs can account for only ∼30 per cent of the increase in the specific SN Ia rate between stellar masses of M⋆ = 1010 and 107.2 M⊙. We find that an additional metallicity dependence of approximately ∼Z−0.5 is required to explain the observed scaling. This scaling matches the metallicity dependence of the close binary fraction observed in APOGEE, suggesting that the enhanced SN Ia rate in low-mass galaxies can be explained by a combination of their more extended SFHs and a higher binary fraction due to their lower metallicities. Due to the shape of the MZR, only galaxies below M⋆ ≈ 3 × 109 M⊙ are significantly affected by the metallicity-dependent SN Ia rates. The $\dot{\text{N}}_\text{Ia} / \text{M}_\star \sim \text{M}_\star ^{-0.3}$ scaling becomes shallower with increasing redshift, dropping by factor of ∼2 at 107.2 M⊙ between z = 0 and 1 with our ∼Z−0.5 scaling. With metallicity-independent rates, this decrease is a factor of ∼3. We discuss the implications of metallicity-dependent SN Ia rates for one-zone models of galactic chemical evolution.
Production of water from a dynamically new comet
Authors: Kossacki Konrad J , Szutowicz Sławomira 
Published: October 2023

ABSTRACT
In our paper, we presented the results of numerical simulations dealing with the production of water from the nucleus of a hypothetical dynamically new comet. The simulations were performed using empirical equation based on the results of laboratory experiments performed in vacuum using ice agglomerates. We presented also the results obtained using simple, popular approach. The model nucleus is a prolate ellipsoid of rough surface. The results were compared with the observed production of water from the nucleus of comet C/2012 K1 PanSTARRS. Our simulations indicate, that the observed production of water can be reproduced without assuming the presence of highly volatile ices when the dust may slide down the slopes and the thermal conductivity of the nucleus is very low.