bluuebunny/crossref_metadata_2025_split huggingface dataset:
Interactions between trace metals (Cu, Hg, Ni, Pb) and 2,3,7,8-tetrachlorodibenzo-p-dioxin in the antarctic fishTrematomus bernacchii: Oxidative effects on biotransformation pathway
Authors: Benedetti Maura , Fattorini Daniele , Martuccio Giacomo , Nigro Marco , Regoli Francesco 
Published: November 2008

AbstractBiological effects of chemical mixtures are an emerging issue when using biomarkers in field conditions, because synergistic or inhibitory interactions, cascade, and indirect mechanisms can both enhance or suppress responses to specific classes of pollutants. The Antarctic rock cod (Trematomus bernacchii) was exposed to various trace metals (Cu, Hg, Ni, and Pb) and to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), dosed alone or in combination, to generate hypotheses regarding the mechanisms of action at the cellular level. Concentrations of metals significantly increased in liver of T. bernacchii without significant differences between organisms exposed only to the elements or cotreated with TCDD. The marked induction of cytochrome P450 (CYP) by TCDD was greatly suppressed by cotreatment with Cu at both catalytic and protein expression levels, whereas no significant effects were caused by coexposures with Hg, Ni, and Pb. The oxidative status was measured by integrating individual antioxidants with the total oxyradical scavenging capacity toward peroxyl radicals (ROO·) and hydroxyl radicals (·OH). Synergistic oxidative effects appeared in fish coexposed to Cu and TCDD, suggesting that biotransformation efficiency is down-regulated by higher levels of hydrogen peroxide, hydroxyl radicals, and/or mechanisms limiting availability of heme groups. Major oxidative perturbations also were observed in organisms coexposed to TCDD and Hg; in these organisms, however, the marked increase of glutathione content could explain the absence of oxidative inhibition of the CYP system. More limited oxidative effects were caused by Ni and Pb, and the contemporary absence of inhibitory effects on CYP would further confirm the importance of pro-oxidant mechanisms in modulating the biotransformation pathway. The overall results indicate that a wide battery of biomarkers is necessary to assess the impact of chemical mixtures in field conditions.
Toxicological assessment of chemicals usingCaenorhabditis elegansand optical oxygen respirometry
Authors: Schouest Katherine , Zitova Alice , Spillane Charles , Papkovsky Dmitri B. 
Published: November 2008

AbstractOxygen consumption is indicative of an organism's metabolic state, whereby alterations in respiration rate can result from the presence of different stimuli. Here, we develop a novel approach based on quenched fluorescence oxygen sensing and respirometry method for toxicity screening assays using the nematode Caenorhabditis elegans. Previously, C. elegans was established as a useful model in soil and aquatic toxicology studies. For existing toxicology screening approaches with C. elegans, however, the endpoint is lethality. In addition, the assay time frame for the existing approaches is considerably longer than that for the approach described here. We present a sensitive, robust, high-throughput platform using standard laboratory equipment for toxicological studies by measuring respiration rate in C. elegans animals using a phosphorescent probe.
Nonnutrient anthropogenic chemicals in seagrass ecosystems: Fate and effects
Authors: Lewis Michael A. , Devereux Richard 
Published: November 2008

Abstract
Impacts of human-related chemicals, either alone or in combination with other stressors, are important to understand to prevent and reverse continuing worldwide seagrass declines. This review summarizes reported concentrations of anthropogenic chemicals in grass bed–associated surface waters, sediments, and plant tissues and phytotoxic concentrations. Fate information in seagrass-rooted sediments and overlying water is most available for trace metals. Toxicity results in aqueous exposures are available for at least 13 species and a variety of trace metals, pesticides, and petrochemicals. In contrast, results for chemical mixtures and chemicals in sediment matrices are uncommon. Contaminant bioaccumulation information is available for at least 23 species. The effects of plant age, tissue type, and time of collection have been commonly reported but not biological significance of the chemical residues. Experimental conditions have varied considerably in seagrass contaminant research and interspecific differences in chemical residues and chemical tolerances are common, which limits generalizations and extrapolations among species and chemicals. The few reported risk assessments have been usually local and limited to a few single chemicals and species representative of the south Australian and Mediterranean floras. Media-specific information describing exposure concentrations, toxic effect levels, and critical body burdens of common near-shore contaminants is needed for most species to support integrated risk assessments at multiple geographical scales and to evaluate the ability of numerical effects-based criteria to protect these marine angiosperms at risk.
Development and evaluation of reverse polyethylene samplers for marine phase ii whole-sediment toxicity identification evaluations
Authors: Perron Monique M. , Burgess Robert M. , Ho Kay T. , Pelletier Marguerite C. , Friedman Carey L. , Cantwell Mark G. , Shine James P. 
Published: November 2008

AbstractMarine and estuarine sediments accumulate contaminants and act as a sink for a wide range of toxic chemicals. As a result, the sediments themselves can become a source of contamination. At sufficient levels, contaminated sediments can cause benthic impairments and toxicity to marine organisms. Among the wide range of contaminants, nonionic organic contaminants (NOCs) are a primary cause of toxicity in marine sediments. Toxicity identification evaluations (TIEs) are used to characterize and identify chemicals causing toxicity in effluents, interstitial waters, and whole sediments using whole-organism endpoints. Phase I whole-sediment TIE methods for NOCs exist, but the development of phase II TIE methods for NOCs is a current research challenge. In the present study, the use of reverse polyethylene samplers (RePES) for phase II methods is examined. Various RePES designs were evaluated in an experimental design study with NOC chemical solutions. Based on equilibration time and proximity of measured NOC water concentrations in the reconstituted system to theoretical concentrations, a nontriolein design with loading of chemical solutions on the inside of the polyethylene tubing was chosen as most effective. A partitioning study demonstrated NOCs partitioned between the RePES and water as well as between the water and air, as expected using this nontriolein RePES design. Finally, a sediment toxicity study comparing the nontriolein RePES to contaminant-spiked sediments was conducted. The nontriolein RePES design was capable of successfully recreating the toxicity and water concentrations observed with the intact sediments.
Stability and stress analyses of headrace tunnel, Upper Seti Storage Hydroelectric Project, Western Nepal
Authors: Regmi Niraj Kumar , Adhikary Prakash Chandra , Tamrakar Jayandra Man , Dhakal Rabindra Prasad 
Published: November 2008

The Upper Seti (Damauli) Storage Hydroelectric Project has a capacity of 128 MW, the storage type scheme, and includes 1000 m long horse shoe headrace tunnel, 140 m high concrete gravity dam, two diversion tunnels of lengths 712 m and 881 m and an underground powerhouse. The study was carried out to identify stability and stress conditions for the headrace tunnel to suggest the required tunnel support. The project area extensively covers dolomite and minorly covers slate. The rock mass classification showed fair to good quality of dolomite and poor to fair quality of slate. The surface wedges would form in intake portal and powerhouse site. In the headrace tunnel, structural wedges would be formed due to underground excavation and would be stabilized with the help of shotcrete and rock bolting. doi: 10.3126/bdg.v10i0.1419 Bulletin of the Department of Geology, Tribhuvan University, Kathmandu, Nepal, Vol. 10, 2007, pp. 45-54
Association of CD4 Enhancer Gene Polymorphisms with Rheumatoid Arthritis and Systemic Lupus Erythematosus in Taiwan
Authors: LO SUI-FOON , WAN LEI , LIN HSIU-CHEN , HUANG CHUNG-MING , TSAI FUU-JEN 
Published: November 2008

ObjectiveIt has been found that changes in CD4 expression and CD4+ T cell activity may influence tolerance or tissue destruction in autoimmune diseases and contribute to their risk. We examined whether an association of CD4 enhancer gene polymorphisms with rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE) exists.MethodsFor study of the CD4 –11743A/C polymorphism, 192 patients with RA, 141 patients with SLE, and 96 normal controls participated. For the CD4 –10845A/G polymorphism, 191 patients with RA, 127 patients with SLE, and 92 controls participated. The polymorphism of the CD4 enhancer was examined with the polymerase chain reaction-restriction fragment length polymorphism method. Genotypic and allelic frequencies of the 3 groups of participants were compared. Genotype groups were also compared according to different clinical variables among the patients with RA and SLE.ResultsFor the CD4 –11743A/C polymorphism, patients with RA demonstrated significantly higher frequency of the C allele (p = 0.048); patients with SLE had significantly higher frequency of the CC genotype (p = 0.026), and lower frequency of the AC genotype (p = 0.013) compared with controls. For the CD4 –10845A/G polymorphism, patients with RA had significantly higher frequencies of the AA genotype (p = 0.047) and the A allele (p = 0.026); patients with SLE had significantly higher frequency of the AA genotype (p = 0.011) and A allele (p = 0.001), and lower frequency of the GG genotype (p = 0.003) compared with controls. A comparison of genotype groups according to different clinical variables revealed the association of the respective polymorphisms with mucosal ulcer lesions among patients with SLE.ConclusionOur results suggest that the genetic polymorphisms at the CD4 enhancer gene are associated with the risk of development of RA and SLE. They are also associated with mucosal ulcer lesions in patients with SLE.
Functional Polymorphisms of Folate-Metabolizing Enzymes in Relation to Homocysteine Concentrations in Systemic Lupus Erythematosus
Authors: SUMMERS CAROLYN M. , CUCCHIARA ANDREW J. , NACKOS ELENI , HAMMONS ANDREA L. , MOHR ELISABETH , WHITEHEAD ALEXANDER S. , VON FELDT JOAN M. 
Published: November 2008

ObjectiveTo determine if functional polymorphisms of folate/homocysteine pathway enzymes are associated with homocysteine concentrations and/or coronary artery calcification (CAC) scores in patients with systemic lupus erythematosus (SLE) and controls.MethodsWe investigated 163 SLE patients and 160 controls. Functional polymorphisms in 6 genes in the folate/homocysteine pathway were genotyped: 5,10-methylenetetrahydrofolate reductase (MTHFR) 677C>T, MTHFR 1298A>C, cystathionine β-synthase (CBS) 844ins68, methionine synthase (MTR) 2756A>G, methionine synthase reductase (MTRR) 66A>G, thymidylate synthase (TYMS) 1494del6, and dihydrofolate reductase (DHFR) c.86+60_78.ResultsHomocysteine levels were higher in African American SLE patients than Caucasian patients and African American controls. Genotype distributions were significantly different in African American and Caucasian controls for 6 of the 7 polymorphisms. Genotype distributions for each polymorphism did not differ significantly between SLE patients and controls even after stratification by race. Glomerular filtration rate was strongly negatively correlated to homocysteine levels, and was therefore adjusted for as a covariate in the models of the effects of the polymorphisms on homocysteine levels. In SLE patients none of the 7 polymorphisms was associated with homocysteine concentrations. In Caucasian controls only MTHFR 677C>T and 1298A>C showed effects on homocysteine similar to what would be expected from the literature. There were no genotypic associations with median CAC scores in SLE patients or controls with and without stratification by race.ConclusionPolymorphisms in folate/homocysteine metabolizing enzymes do not predict higher homocysteine levels or CAC scores in patients with SLE.
Different Genetic Effects of Interferon Regulatory Factor 5 (IRF5) Polymorphisms on Systemic Lupus Erythematosus in a Korean Population
Authors: SHIN HYOUNG DOO , KIM IL , CHOI CHAN-BUM , LEE SOO OK , LEE HYE WON , BAE SANG-CHEOL 
Published: November 2008

ObjectiveIn an effort to replicate additional associations of interferon regulatory factor 5 (IRF5) polymorphisms with systemic lupus erythematosus (SLE) in an Asian population, we examined those genetic effects in a Korean SLE cohort.MethodsEach IRF5 polymorphism was genotyped in 1565 subjects using the TaqMan method and examined to determine whether it could explain the association with SLE.ResultsThree single-nucleotide polymorphisms (IRF5-15-1, rs2070197, and rs10488631), which showed strong and/or independent association in Caucasian populations, were not polymorphic in our Korean population. Association analysis revealed different genetic effects in Koreans compared with Caucasian populations. In addition, conditional analysis suggested independent genetic effects of 3 variant groups in the Korean population.ConclusionWe demonstrate different genetic effects of IRF5 polymorphisms on the risk of SLE according to ethnicity.
RAPID3 (Routine Assessment of Patient Index Data 3), a Rheumatoid Arthritis Index Without Formal Joint Counts for Routine Care: Proposed Severity Categories Compared to Disease Activity Score and Clinical Disease Activity Index Categories
Authors: PINCUS THEODORE , SWEARINGEN CHRISTOPHER J. , BERGMAN MARTIN , YAZICI YUSUF 
Published: November 2008

ObjectiveTo compare 4 categories (high, moderate, and low severity, and near-remission) of RAPID3 (Routine Assessment of Patient Index Data 3), an index without formal joint counts, which is scored in < 10 seconds to 4 categories of the DiseaseActivity Score (DAS28) and Clinical Disease Activity Index (CDAI) in patients with rheumatoid arthritis (RA).MethodsAll patients complete a Multidimensional Health Assessment Questionnaire (MDHAQ) at each visit. A physician/assessor 28-joint count and erythrocyte sedimentation rate (ESR) were completed in 285 patients with RA in usual care by 3 rheumatologists to score DAS28, CDAI, and RAPID3. RAPID3 includes the 3 MDHAQ patient self-report RA Core Data Set measures for physical function, pain, and patient global estimate. Proposed RAPID3 (range 0–10) severity categories of high (> 4), moderate (2.01–4), low (1.01–2), and near-remission (≤ 1) were compared to DAS (0–10) activity categories of high (> 5.1), moderate (3.21–5.1), low (2.61–3.2), and remission (≤ 2.6), and CDAI (0–76) categories of > 22, 10.1–22.0, 2.9–10.0, and ≤ 2.8. Additional RAPID scores, which add to RAPID3 a physician/assessor or patient self-report joint count and/or assessor global estimate, were also analyzed. Statistical significance was analyzed using Spearman correlations, cross-tabulations, and kappa statistics.ResultsAll RAPID scores were correlated significantly with DAS28 and CDAI (rho > 0.65, p < 0.001). Overall, 78%–84% of patients who met DAS28 or CDAI moderate/high activity criteria met similar RAPID severity criteria, and 68%–77% who met DAS28 or CDAI remission/low activity criteria also met similar RAPID criteria. RAPID3 was as informative as other indices.ConclusionRAPID3 provides a feasible, informative quantitative index for busy clinical settings.
Increased Serum Levels of Nɛ-(hexanoyl)lysine, A New Marker of Oxidative Stress, in Systemic Sclerosis
Authors: SHIMIZU KAZUHIRO , OGAWA FUMIHIDE , AKIYAMA YUICHIRO , MUROI EIJI , YOSHIZAKI AYUMI , IWATA YOHEI , KOMURA KAZUHIRO , BAE SANGJAE , SATO] SHINICHI 
Published: November 2008

ObjectiveTo determine serum levels of Nɛ-(hexanoyl)lysine (HEL), a new marker of oxidative stress, and its clinical association in patients with systemic sclerosis (SSc).MethodsSerum HEL levels from 26 patients with limited cutaneous SSc (lSSc), 34 with diffuse cutaneous SSc (dSSc), 20 with systemic lupus erythematosus (SLE), 20 with dermatomyositis (DM), and 40 healthy individuals were examined by enzyme linked immunosorbent assay.ResultsSerum HEL levels were elevated in patients with SSc compared with healthy controls (n = 40) with similar levels between patients with lSSc and dSSc (p < 0.0001). SSc patients with elevated HEL levels had increased serum levels of anti-agalactosyl IgG antibody, rheumatoid factor (RF), and IgM than those with normal HEL levels (p < 0.05). HEL levels correlated positively with anti-agalactosyl IgG antibody (p = 0.013, r = 0.408) and RF titer (p = 0.0028, r = 0.426).ConclusionOur results suggest that oxidative stress may play an important role in immunological abnormalities of SSc, especially in the production of autoantibodies including anti-agalactosyl IgG antibody and RF.
Circulating Osteoprotegerin and Soluble RANK Ligand in Systemic Sclerosis
Authors: DOVIO ANDREA , DATA VALERIA , CARIGNOLA RENATO , CALZOLARI GILBERTO , VITETTA ROSETTA , VENTURA MASSIMO , SABA LAURA , SEVERINO ADRIANA , ANGELI ALBERTO 
Published: November 2008

ObjectiveMicrovascular damage is an early pathogenetic event in systemic sclerosis (SSc). The receptor activator of nuclear factor-κB ligand (RANKL)/RANK/osteoprotegerin (OPG) system is involved in vascular biology. Our aim was to assess OPG and soluble RANKL (sRANKL) serum levels in patients with SSc and healthy controls.MethodsSixty patients with SSc (median age 58, range 31–72 yrs) and 60 healthy subjects matched for age, sex, and menopausal status were recruited. Serum OPG, sRANKL, soluble vascular cell adhesion molecule (sVCAM; marker of endothelial activation/injury), and bone turnover markers were measured. Bone mineral density in patients was assessed and cardiovascular/coronary risk was estimated.ResultsOPG was similar in the 2 groups, while sRANKL and sRANKL/OPG ratio was higher in patients (p = 0.01 for both). sVCAM was markedly higher in patients (p < 0.001). OPG levels correlated positively with age in both patients (Spearman R = 0.50, p < 0.001) and controls (R = 0.56, p < 0.001). In patients, OPG was lower in men and higher in those with active ulcers or calcinosis. sRANKL levels were higher in patients treated with platelet aggregation inhibitors, and correlated negatively with densitometric measures. 25-hydroxyvitamin D levels were significantly lower in patients (p < 0.001). In patients, OPG levels correlated positively with cardiovascular and coronary risk (R = 0.28, p = 0.05 and R = 0.34, p < 0.01, respectively) and were higher in patients with hypertension and left ventricular hypertrophy. sVCAMlevels correlated positively with cardiovascular and coronary risk (R = 0.27, p = 0.06, and R = 0.38, p < 0.01, respectively).ConclusionHigher sRANKL levels and sRANKL/OPG ratio in patients with SSc are likely to be a consequence of altered bone microenvironment. We show a dissociation between the well established marker of endothelial activation/injury, sVCAM, and the alleged marker of vascular damage, OPG, in patients with SSc. Further studies are needed to better ascertain the relationships of the RANKL/RANK/OPG system with the progression of macro- and microvascular damage.
Changing Patterns in Mortality and Disease Outcomes for Patients with Systemic Lupus Erythematosus
Authors: UROWITZ MURRAY B. , GLADMAN DAFNA D. , TOM BRIAN D.M. , IBAÑEZ DOMINIQUE , FAREWELL VERNON T. 
Published: November 2008

ObjectiveSurvival of patients with systemic lupus erythematosus (SLE) has improved significantly, but new morbidities have emerged, leading to altered patterns of outcome in this disease. We examined changes in mortality and other outcomes over time in a large SLE cohort.MethodsA group of 1241 patients from the University of Toronto Lupus Clinic followed prospectively were divided into 4 entry cohorts — 1: 1970–1978, 2: 1979–1987, 3: 1988–1996, 4: 1997–2005. These cohorts were followed through four 9-year calendar periods defined over the same intervals. Both cohort and calendar effects were assessed for the following outcomes: mortality (standardized mortality ratio; SMR), disease activity over time (adjusted mean SLEDAI; AMS), cumulative damage (Systemic Lupus International Collaborating Clinics Damage Index; SDI), coronary artery disease (CAD), and osteonecrosis (ON). Cox regression models were used to further investigate mortality and the influence on it of the disease-related factors.ResultsOver the 36-year period of the study, 211 deaths occurred. The overall SMR in the first and last decades were 12.60 (95% CI: 9.13, 17.39) and 3.46 (95% CI: 2.71, 4.40) respectively. When SMR were stratified by the entry cohort and calendar period, there is evidence of a calendar-period effect but no cohort effect. The AMS decreased over the decades, while SDI, CAD, and ON increased. There were significant detrimental effects for male sex, CAD, AMS, SDI, and use of immunosuppressive drugs and significant protective effects for use of antimalarials and the effect of calendar period on mortality.ConclusionOur study demonstrates improved survival in patients with SLE over a 36-year period. Disease-related variables included in the model are important factors for mortality in this SLE cohort, but could not completely explain the trend of improved survival over calendar period observed.
Risk Factors for Developing Osteonecrosis After Prophylaxis in Steroid-treated Rabbits
Authors: MOTOMURA GORO , YAMAMOTO TAKUAKI , MIYANISHI KEITA , KONDO KYOKO , HIROTA YOSHIO , IWAMOTO YUKIHIDE 
Published: November 2008

ObjectiveBoth abnormal lipid metabolisms and coagulopathy have been suggested to be associated with the development of steroid-induced osteonecrosis (ON). We examined plasma risk factors for development of steroid-induced ON in rabbits after prophylaxis with a lipid-lowering agent and/or an anticoagulant.MethodsSeventy adult male rabbits were injected intramuscularly once with 20 mg/kg methylprednisolone acetate. Fifty-five rabbits received prophylaxis with probucol (a lipid-lowering agent; n = 20) or warfarin (an anticoagulant; n = 14) or both (n = 21). Probucol and warfarin were administered beginning 1 to 2 weeks prior to steroid injection. Two weeks after steroid injection, the bilateral femora and humeri were examined histopathologically for the presence of ON. Based on a logistic regression model, laboratory variables before steroid injection were assessed to determine whether they demonstrated any association with the risk of ON.ResultsTwenty-one rabbits developed ON. In the univariate analyses, significant positive associations were observed between plasma concentrations of triglyceride and low-density lipoprotein and the risk of development of ON. In the multivariate model, only the plasma triglyceride level suggested a positive association. Even after adjusting for probucol and warfarin use, the plasma triglyceride level was still suggested to be a predictor for development of ON. Rabbits with higher baseline triglyceride levels had a more pronounced triglyceride increase in their response to steroids.ConclusionOur study suggests that, after prophylaxis with probucol and/or warfarin, plasma triglyceride level is associated with the development of steroid-induced ON in rabbits.