bluuebunny/crossref_metadata_2025_split huggingface dataset:
Altered perivascular spaces in subcortical white matter in Parkinson’s disease patients with levodopa-induced dyskinesia
Authors: Cao Xingyue , Gan Caiting , Zhang Heng , Yuan Yongsheng , Sun Huimin , Zhang Li , Wang Lina , Zhang Lian , Zhang Kezhong 
Published: March 2024

AbstractDilated perivascular spaces (PVS) have emerged as a pathological hallmark in various neurological conditions, including Parkinson’s disease (PD). Levodopa-induced dyskinesia (LID), an intractable motor complication of PD, remains enigmatic regarding the distribution patterns of PVS. Our objective was to scrutinize the percent PVS (pPVS) changes within PD patients with LID (PD-LID). In total, 132 individuals were enrolled, including PD-LID (n = 42), PD patients without LID (PD-nLID, n = 45), and healthy controls (HCs, n = 45). Employing an automated approach for PVS quantification based on structural magnetic resonance imaging, we comprehensively evaluated total pPVS in subcortical white matter globally and regionally. A significant increase in global pPVS was observed in PD patients versus HCs, particularly evident in PD-LID relative to HCs. Within the PD-LID group, elevated pPVS was discerned in the right inferior frontal gyrus region (rIFG) (pars opercularis), contrasting with PD-nLID and HCs. Moreover, PD patients exhibited increased pPVS in bilateral superior temporal regions compared to HCs. Notably, pPVS in the rIFG positively correlated with dyskinetic symptoms and could well identify LID. Our findings unveiled PVS alternations in subcortical white matter in PD-LID at both global and regional levels, highlighting the increased pPVS in rIFG as a prospective imaging marker for LID.
Protein-altering variants at copy number-variable regions influence diverse human phenotypes
Authors: Hujoel Margaux L. A. , Handsaker Robert E. , Sherman Maxwell A. , Kamitaki Nolan , Barton Alison R. , Mukamel Ronen E. , Terao Chikashi , McCarroll Steven A. , Loh Po-Ru 
Published: March 2024

AbstractCopy number variants (CNVs) are among the largest genetic variants, yet CNVs have not been effectively ascertained in most genetic association studies. Here we ascertained protein-altering CNVs from UK Biobank whole-exome sequencing data (n = 468,570) using haplotype-informed methods capable of detecting subexonic CNVs and variation within segmental duplications. Incorporating CNVs into analyses of rare variants predicted to cause gene loss of function (LOF) identified 100 associations of predicted LOF variants with 41 quantitative traits. A low-frequency partial deletion of RGL3 exon 6 conferred one of the strongest protective effects of gene LOF on hypertension risk (odds ratio = 0.86 (0.82–0.90)). Protein-coding variation in rapidly evolving gene families within segmental duplications—previously invisible to most analysis methods—generated some of the human genome’s largest contributions to variation in type 2 diabetes risk, chronotype and blood cell traits. These results illustrate the potential for new genetic insights from genomic variation that has escaped large-scale analysis to date.
Cell-type-specific and disease-associated expression quantitative trait loci in the human lung
Authors: Natri Heini M. , Del Azodi Christina B. , Peter Lance , Taylor Chase J. , Chugh Sagrika , Kendle Robert , Chung Mei-i , Flaherty David K. , Matlock Brittany K. , Calvi Carla L. , Blackwell Timothy S. , Ware Lorraine B. , Bacchetta Matthew , Walia Rajat , Shaver Ciara M. , Kropski Jonathan A. , McCarthy Davis J. , Banovich Nicholas E. 
Published: March 2024

AbstractCommon genetic variants confer substantial risk for chronic lung diseases, including pulmonary fibrosis. Defining the genetic control of gene expression in a cell-type-specific and context-dependent manner is critical for understanding the mechanisms through which genetic variation influences complex traits and disease pathobiology. To this end, we performed single-cell RNA sequencing of lung tissue from 66 individuals with pulmonary fibrosis and 48 unaffected donors. Using a pseudobulk approach, we mapped expression quantitative trait loci (eQTLs) across 38 cell types, observing both shared and cell-type-specific regulatory effects. Furthermore, we identified disease interaction eQTLs and demonstrated that this class of associations is more likely to be cell-type-specific and linked to cellular dysregulation in pulmonary fibrosis. Finally, we connected lung disease risk variants to their regulatory targets in disease-relevant cell types. These results indicate that cellular context determines the impact of genetic variation on gene expression and implicates context-specific eQTLs as key regulators of lung homeostasis and disease.
Genome assembly of a symbiotic balantidia (Balantidium ctenopharyngodoni) in fish hindgut
Authors: Zhao Weishan , Xiong Jie , Li Ming , Bu Xialian , Jiang Chuanqi , Wang Guangying , Zhang Jing , Li Wenxiang , Zou Hong , Miao Wei , Chen Kai , Wang Guitang 
Published: March 2024

AbstractBalantidium ctenopharyngodoni is identified as the sole ciliate species that exclusively resides within the hindgut of grass carp with high prevalence and intensity. In this study, the successful cultivation of B. ctenopharyngodoni enabled us to collect enough cells for genome sequencing. Consequently, we acquired a high-quality genome assembly spanning 68.66 Mb, encompassing a total of 22,334 nanochromosomes. Furthermore, we predicted 29,348 protein-coding genes, and 95.5% of them was supported by the RNA-seq data. The trend of GC content in the subtelomeric regions of single-gene chromosomes was similar to other ciliates containing nanochromosomes. A large number of genes encoding carbohydrate-binding modules with affinities for starch and peptidoglycans was identified. The identification of mitochondrion-related organelles (MROs) within genome indicates its well-suited adaptation to the anaerobic conditions in the hindgut environment. In summary, our results will offer resources for understanding the genetic basis and molecular adaptations of balantidia to hindgut of herbivorous fish.
Harnessing Big Data in Critical Care: Exploring a new European Dataset
Authors: Rodemund Niklas , Wernly Bernhard , Jung Christian , Cozowicz Crispiana , Koköfer Andreas 
Published: March 2024

AbstractFreely available datasets have become an invaluable tool to propel data-driven research, especially in the field of critical care medicine. However, the number of datasets available is limited. This leads to the repeated reuse of datasets, inherently increasing the risk of selection bias. Additionally, the need arose to validate insights derived from one dataset with another. In 2023, the Salzburg Intensive Care database (SICdb) was introduced. SICdb offers insights in currently 27,386 intensive care admissions from 21,583 patients. It contains cases of general and surgical intensive care from all disciplines. Amongst others SICdb contains information about: diagnosis, therapies (including data on preceding surgeries), scoring, laboratory values, respiratory and vital signals, and configuration data. Data for SICdb (1.0.6) was collected at one single tertiary care institution of the Department of Anesthesiology and Intensive Care Medicine at the Salzburger Landesklinik (SALK) and Paracelsus Medical University (PMU) between 2013 and 2021. This article aims to elucidate on the characteristics of the dataset, the technical implementation, and provides analysis of its strengths and limitations.
The importance of intravenous glucose tolerance test glucose stimulus for the evaluation of insulin secretion
Authors: Godsland Ian F. , Johnston Desmond G. , Alberti KGMM , Oliver Nick 
Published: March 2024

AbstractFor 100 years, the Intravenous glucose tolerance test (IVGTT) has been used extensively in researching the pathophysiology of diabetes mellitus and AIRg—the IVGTT-induced acute insulin response to the rapid rise in circulating glucose—is a key measure of insulin secretory capacity. For an effective evaluation of AIRg, IVGTT glucose loading should be adjusted for glucose distribution volume (gVOL) to provide an invariant, trend-free immediate rise in circulating glucose (ΔG0). Body weight-based glucose loads have been widely used but whether these achieve a trend-free ΔG0 does not appear to have been investigated. By analysing variation in AIRg, ΔG0 and gVOL with a range of IVGTT loads, both observed and simulated, we explored the hypothesis that there would be an optimum anthropometry-based IVGTT load calculation that, by achieving a trend-free ΔG0, would not compromise evaluation of AIRg as an index of beta cell function. Data derived from patient and research volunteer records for 3806 IVGTT glucose and insulin profiles. Among the non-obese, as gVOL rose, weight increased disproportionately rapidly. Consequently, the IVGTT glucose load needed for an invariant ΔG0 was progressively overestimated, accounting for 47% of variation in AIRg. Among the obese, ΔG0 was trend-free yet AIRg increased by 11.6% per unit body mass index, consistent with a more proportionate increase in weight with gVOL and a hyperinsulinaemic adaptation to adiposity-associated insulin resistance. Simulations further confirmed our hypothesis by demonstrating that a body surface area-based IVGTT load calculation could provide for a more generally invariant IVGTT ΔG0.
Composition and antimicrobial activity of Rosmarinus officinalis L. and Artemisia monosperma L. leaf essential oils and methanolic extracts from plants grown in normal and saline habitats in Egypt
Authors: Soliman Marwa Mohamed , Elsaba Yasmin Mohamed , Soliman M. S. A. , Ahmed Eman Zakaria 
Published: March 2024

AbstractThe present work aimed to investigate the effect of salinity in natural habitats in Egypt on the main secondary metabolites of Rosmarinus officinalis L. and Artemisia monosperma L. plants compared to plants grown at normal conditions. Plants grown under salinity were collected from Egyptian Western Coastal region habitats irrigated with underground water. Results showed that salinity increased the essential oil percentage of R. officinalis L. by 52.7% and A. monosperma L by 0.29% in addition to the total phenolics and flavonoids content in dry leaves compared to control plants. GC/MS analysis of rosemary essential oils revealed that salinity decreased the amount of some major oil monoterpenes component as verbenone, with a slight effect on 1,8 cineole and increased Camphor, endo- Boreneol, and linalool in addition to the appearance of new specific components such as Chrysanthenone monoterpene ketone and Caryophyllene sesquiterpene, while, in the case of Artemisia, the GC/MS showed that Artemisia ketone, Camphor, β -phellandrene monoterpenes andα-Bisabolol sesquiterpenewere the major oil components; salinity decreased Camphor and β -phellandrene content and increased artemisia ketone and α-Bisabolol oil content. About 11 new oil constituents were detected such as ( +)-2-Bornanone and Sesquisabinene hydrate. Mineral ions (N, K+, Ca+2, P, and Mg+2) uptake by R. officinalis and A. monosperma decreased in plants grown under salinity, while Na content increased compared to corresponding controls. Results demonstrated that both plants could tolerate the high salinity level in natural Western Coastal region soil which promoted more production of valuable secondary metabolites. The antimicrobial effect of R. officinalis L. and A. monosperma L. leaf methanolic extracts, results showed that R. officinalis extracts had an inhibitory response against all tested gram-positive and negative bacteria, in addition to the yeast (Candida albicans), whereas there was no any inhibitory effect concerning A. monosperma L extract on the tested species.
A retrospective study evaluating the influence of Class III correction appliances on the sagittal pharyngeal airway dimension
Authors: Eid Farah Y. , Abbas Bassant A. , Elfouly Dina A. , Madian Ahmed M. 
Published: March 2024

AbstractThe aim of this study was to compare the effects of Class III correction appliances including the Facemask (FM), and the new non-compliance fixed functional appliances such as the Reversed Forsus Fatigue Resistant Device (FRD), as well as the CS-2000 (CS), on the sagittal pharyngeal airway dimension (SPAD). Pre-treatment and post-treatment lateral cephalograms of 45 patients who underwent Class III appliance treatment, using either FM, Reversed FRD, or CS were collected from the files of treated patients. SPAD changes were evaluated in each group, and comparisons were conducted between the three study groups. Additionally, sagittal and vertical skeletal measurements were conducted. The FM, the Reversed FRD, and the CS, were found to generate a significant increase in the SPAD, with the Reversed FRD contributing to the most significant change at the OPAA (116.80 ± 26.36 mm2). All three appliances elicited significant antero-posterior changes in the SNA°, SNB°, and ANB°, also with the greatest intermaxillary change documented with the employment of the Reversed FRD (ANB° = 3.33 ± 0.82°). As for the vertical dimension, the FM, the Reversed FRD, and the CS elicited significant FMA° increases, with the greatest change attributed to the FM (FMA° = 2.32 ± 0.97°). Therefore, the three tested Class III corrective appliances generated significant SPAD, antero-posterior, and vertical changes. However, the Revered FRD showed a superior impact in increasing the SPAD at the OPAA level and in eliciting significant intermaxillary changes.
An adaptive predefined time sliding mode control for uncertain nonlinear cyber-physical servo system under cyber attacks
Authors: Riaz Saleem , Li Bingqiang , Qi Rong , Zhang Chenda 
Published: March 2024

AbstractMalicious attacks are often inevitable in cyber-physical systems (CPS). Accuracy in Cyber physical system for position tracking of servos is the major concern now a days. In high precision industrial automation, it is very hard to achieve accuracy in tracking especially under malicious cyber-attacks, control saturations, parametric perturbations and external disturbances. In this paper, we have designed a novel predefined time (PDT) convergence sliding mode adaptive controller (PTCSMAC) for such kind of cyber physical control system. Main key feature of our control is to cope these challenges that are posed by CPS systems such as parameter perturbation, control saturation, and cyber-attacks and the whole system then upgrade to a third-order system to facilitate adaptive control law. Then, we present an adaptive controller based on the novel PDT convergent sliding mode surface (SMS) combined with a modified weight updated Extreme Learning Machine (ELM) which is used to approximate the uncertain part of the system. Another significant advantage of our proposed control approach is that it does not require detailed model information, guaranteeing robust performance even when the system model is uncertain. Additionally, our proposed PTCSMAC controller is nonsingular regardless of initial conditions, and is capable of eradicating the possibility of singularity problems, which are frequently a concern in numerous CPS control systems. Finally, we have verified our designed PTCSMAC control law through rigorous simulations on CPS seeker servo positioning system and compared the robustness and performance of different existing techniques.
TCN-attention-HAR: human activity recognition based on attention mechanism time convolutional network
Authors: Wei Xiong , Wang Zifan 
Published: March 2024

AbstractWearable sensors are widely used in medical applications and human–computer interaction because of their portability and powerful privacy. Human activity identification based on sensor data plays a vital role in these fields. Therefore, it is important to improve the recognition performance of different types of actions. Aiming at the problems of insufficient time-varying feature extraction and gradient explosion caused by too many network layers, a time convolution network recognition model with attention mechanism (TCN-Attention-HAR) was proposed. The model effectively recognizes and emphasizes the key feature information. The ability of extracting temporal features from TCN (temporal convolution network) is improved by using the appropriate size of the receiver domain. In addition, attention mechanisms are used to assign higher weights to important information, enabling models to learn and identify human activities more effectively. The performance of the Open Data Set (WISDM, PAMAP2 and USC-HAD) is improved by 1.13%, 1.83% and 0.51%, respectively, compared with other advanced models, these results clearly show that the network model presented in this paper has excellent recognition performance. In the knowledge distillation experiment, the parameters of student model are only about 0.1% of those of teacher model, and the accuracy of the model has been greatly improved, and in the WISDM data set, compared with the teacher's model, the accuracy is 0.14% higher.
3D cotton-type anisotropic biomimetic scaffold with low fiber motion electrospun via a sharply inclined array collector for induced osteogenesis
Authors: Cho Sun Hee , Lee Soonchul , Kim Jeong In 
Published: March 2024

AbstractElectrospinning is an effective method to fabricate fibrous scaffolds that mimic the ECM of bone tissue on a nano- to macro-scale. However, a limitation of electrospun fibrous scaffolds for bone tissue engineering is the structure formed by densely compacted fibers, which significantly impedes cell infiltration and tissue ingrowth. To address this problem, several researchers have developed numerous techniques for fabricating 3D fibrous scaffolds with customized topography and pore size. Despite the success in developing various 3D electrospun scaffolds based on fiber repulsion, the lack of contact points between fibers in those scaffolds has been shown to hinder cell attachment, migration, proliferation, and differentiation due to excessive movement of the fibers. In this article, we introduce a Dianthus caryophyllus-inspired scaffold fabricated using SIAC-PE, a modified collector under specific viscosity conditions of PCL/LA solution. The developed scaffold mimicking the structural similarities of the nature-inspired design presented enhanced cell proliferation, infiltration, and increased expression of bone-related factors by reducing fiber movements, presenting high space interconnection, high porosity, and controlled fiber topography.
Kir4.1 channels contribute to astrocyte CO2/H+-sensitivity and the drive to breathe
Authors: Cleary Colin M. , Browning Jack L. , Armbruster Moritz , Sobrinho Cleyton R. , Strain Monica L. , Jahanbani Sarvin , Soto-Perez Jaseph , Hawkins Virginia E. , Dulla Chris G. , Olsen Michelle L. , Mulkey Daniel K. 
Published: March 2024

AbstractAstrocytes in the retrotrapezoid nucleus (RTN) stimulate breathing in response to CO2/H+, however, it is not clear how these cells detect changes in CO2/H+. Considering Kir4.1/5.1 channels are CO2/H+-sensitive and important for several astrocyte-dependent processes, we consider Kir4.1/5.1 a leading candidate CO2/H+ sensor in RTN astrocytes. To address this, we show that RTN astrocytes express Kir4.1 and Kir5.1 transcripts. We also characterized respiratory function in astrocyte-specific inducible Kir4.1 knockout mice (Kir4.1 cKO); these mice breathe normally under room air conditions but show a blunted ventilatory response to high levels of CO2, which could be partly rescued by viral mediated re-expression of Kir4.1 in RTN astrocytes. At the cellular level, astrocytes in slices from astrocyte-specific inducible Kir4.1 knockout mice are less responsive to CO2/H+ and show a diminished capacity for paracrine modulation of respiratory neurons. These results suggest Kir4.1/5.1 channels in RTN astrocytes contribute to respiratory behavior.
The nuclear import receptor Kapβ2 modifies neurotoxicity mediated by poly(GR) in C9orf72-linked ALS/FTD
Authors: Cicardi M. E. , Kankate V. , Sriramoji S. , Krishnamurthy K. , Markandaiah S. S. , Verdone B. M. , Girdhar A. , Nelson A. , Rivas L. B. , Boehringer A. , Haeusler A. R. , Pasinelli P. , Guo L. , Trotti D. 
Published: March 2024

AbstractExpanded intronic G4C2 repeats in the C9ORF72 gene cause amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). These intronic repeats are translated through a non-AUG-dependent mechanism into five different dipeptide repeat proteins (DPRs), including poly-glycine-arginine (GR), which is aggregation-prone and neurotoxic. Here, we report that Kapβ2 and GR interact, co-aggregating, in cultured neurons in-vitro and CNS tissue in-vivo. Importantly, this interaction significantly decreased the risk of death of cultured GR-expressing neurons. Downregulation of Kapβ2 is detrimental to their survival, whereas increased Kapβ2 levels mitigated GR-mediated neurotoxicity. As expected, GR-expressing neurons displayed TDP-43 nuclear loss. Raising Kapβ2 levels did not restore TDP-43 into the nucleus, nor did alter the dynamic properties of GR aggregates. Overall, our findings support the design of therapeutic strategies aimed at up-regulating Kapβ2 expression levels as a potential new avenue for contrasting neurodegeneration in C9orf72-ALS/FTD.
New water accounting reveals why the Colorado River no longer reaches the sea
Authors: Richter Brian D. , Lamsal Gambhir , Marston Landon , Dhakal Sameer , Sangha Laljeet Singh , Rushforth Richard R. , Wei Dongyang , Ruddell Benjamin L. , Davis Kyle Frankel , Hernandez-Cruz Astrid , Sandoval-Solis Samuel , Schmidt John C. 
Published: March 2024

AbstractPersistent overuse of water supplies from the Colorado River during recent decades has substantially depleted large storage reservoirs and triggered mandatory cutbacks in water use. The river holds critical importance to more than 40 million people and more than two million hectares of cropland. Therefore, a full accounting of where the river’s water goes en route to its delta is necessary. Detailed knowledge of how and where the river’s water is used can aid design of strategies and plans for bringing water use into balance with available supplies. Here we apply authoritative primary data sources and modeled crop and riparian/wetland evapotranspiration estimates to compile a water budget based on average consumptive water use during 2000–2019. Overall water consumption includes both direct human uses in the municipal, commercial, industrial, and agricultural sectors, as well as indirect water losses to reservoir evaporation and water consumed through riparian/wetland evapotranspiration. Irrigated agriculture is responsible for 74% of direct human uses and 52% of overall water consumption. Water consumed for agriculture amounts to three times all other direct uses combined. Cattle feed crops including alfalfa and other grass hays account for 46% of all direct water consumption.