bluuebunny/crossref_metadata_2025_split huggingface dataset:
An Analysis of the Soil Moisture Feedback on Convective and Stratiform Precipitation
Authors: Alfieri Lorenzo , Claps Pierluigi , D’Odorico Paolo , Laio Francesco , Over Thomas M. 
Published: April 2008

Abstract
Land–atmosphere interactions in midlatitude continental regions are particularly active during the warm season. It is still unclear whether and under what circumstances these interactions may involve positive or negative feedbacks between soil moisture conditions and rainfall occurrence. Assessing such feedbacks is crucially important to a better understanding of the role of land surface conditions on the regional dynamics of the water cycle. This work investigates the relationship between soil moisture and subsequent precipitation at the daily time scale in a midlatitude continental region. Sounding data from 16 locations across the midwestern United States are used to calculate two indices of atmospheric instability—namely, the convective available potential energy (CAPE) and the convective inhibition (CIN). These indices are used to classify rainfall as convective or stratiform. Correlation analyses and uniformity tests are then carried out separately for these two rainfall categories, to assess the dependence of rainfall occurrence on antecedent soil moisture conditions, using simulated soil moisture values. The analysis suggests that most of the positive correlation observed between soil moisture and subsequent precipitation is due to the autocorrelation of long stratiform events. The authors found both areas with positive and areas with negative feedback on convective precipitation. This behavior is likely due to the contrasting effects of soil moisture conditions on convective phenomena through changes in surface temperature and the supply of water vapor to the overlying air column. No significant correlation is found between daily rainfall intensity and antecedent simulated soil moisture conditions either for convective or stratiform rainfall.
On the Asymmetry between Cyclonic and Anticyclonic Flow in Basins with Sloping Boundaries
Authors: Nøst Ole Anders , Nilsson Johan , Nycander Jonas 
Published: April 2008

Abstract
The authors present results from laboratory experiments and numerical simulations of the barotropic circulation in a basin with sloping boundaries forced by a surface stress. Focus is placed on flows with large-scale Rossby numbers that are significantly smaller than unity. The results of the laboratory experiments and simulations show that cyclonic circulation follows the isobaths, the flow pattern being independent of the strength of the forcing. For anticyclonic circulation, the flow pattern changes with forcing strength. It is similar to the cyclonic topographically steered pattern for weak forcing, and it develops strong cross-slope flows for strong forcing.
Linear dynamics are symmetric between cyclonic and anticyclonic circulations and give a good description of the cyclonic and weakly forced anticyclonic circulations. The analysis of the nonlinear dynamics shows that topographically steered cyclonic flows are all stable and steady energy-minimum solutions to the inviscid nonlinear equations. This implies that the nonlinear terms (advection of relative vorticity) are always small for the topographically steered cyclonic flow.
For anticyclonic flow, the situation is very different. It is possible that no anticyclonic topographically steered flow is ever a solution to the steady inviscid equations. And if such a steady anticyclonic flow does exist, it is likely to be unstable, since it must correspond to a saddle point in energy rather than to a minimum or a maximum. The nonlinear terms are important when the Rossby number is larger than the Ekman number, which is the case for the anticyclonic experiments with strongest forcing. For these experiments, the advection of relative vorticity prevents the flow from following topography, creating locations with strong relative vorticity and cross-slope flow. The development of cross-slope flow can be understood from the conservation of potential vorticity in basins with irregular topography.
The separation of anticyclonic flow from steep topography shown in the laboratory experiments and the theoretical analysis herein are in agreement with features like the Gulf Stream separation from the continental slope at Cape Hatteras, North Carolina.
The Upper-Oceanic Response to Overflows: A Mechanism for the Azores Current
Authors: Kida Shinichiro , Price James F. , Yang Jiayan 
Published: April 2008

Abstract
The oceanic response to overflows is explored using a two-layer isopycnal model. Overflows enter the open ocean as dense gravity currents that flow along and down the continental slope. While descending the slope, overflows typically double their volume transport by entraining upper oceanic water. The upper oceanic layer must balance this loss of mass, and the resulting convergent flow produces significant vortex stretching. Overflows thus represent an intense and localized mass and vorticity forcing for the upper ocean. In this study, simulations show that the upper ocean responds to the overflow-induced forcing by establishing topographic β plumes that are aligned more or less along isobaths and that have a transport that is typically a few times larger than that of the overflows. For the topographic β plume driven by the Mediterranean overflow, the occurrence of eddies near Cape St. Vincent, Portugal, allows the topographic β plume to flow across isobaths. The modeled topographic β-plume circulation forms two transatlantic zonal jets that are analogous to the Azores Current and the Azores Countercurrent. In other cases (e.g., the Denmark Strait overflow), the same kind of circulation remains trapped along the western boundary and hence would not be readily detected.
Mean Circulation and Structures of Tilted Ocean Deep Convection
Authors: Wirth A. , Barnier B. 
Published: April 2008

Abstract
Convection in a homogeneous ocean is investigated by numerically integrating the three-dimensional Boussinesq equations in a tilted, rotating frame ( f–F plane) subject to a negative buoyancy flux (cooling) at the surface. The study focuses on determining the influence of the angle (tilt) between the axis of rotation and gravity on the convection process. To this end the following two essential parameters are varied: (i) the magnitude of the surface heat flux, and (ii) the angle (tilt) between the axis of rotation and gravity. The range of the parameters investigated is a subset of typical open-ocean deep convection events.
It is demonstrated that when gravity and rotation vector are tilted with respect to each other (i) the Taylor–Proudman–Poincaré theorem leaves an imprint in the convective structures, (ii) a horizontal mean circulation is established, and (iii) the second-order moments involving horizontal velocity components are considerably increased.
Tilted rotation thus leaves a substantial imprint in the dynamics of ocean convection.
The Stochastic Parametric Mechanism for Growth of Wind-Driven Surface Water Waves
Authors: Farrell Brian F. , Ioannou Petros J. 
Published: April 2008

Abstract
Theoretical understanding of the growth of wind-driven surface water waves has been based on two distinct mechanisms: growth due to random atmospheric pressure fluctuations unrelated to wave amplitude and growth due to wave coherent atmospheric pressure fluctuations proportional to wave amplitude. Wave-independent random pressure forcing produces wave growth linear in time, while coherent forcing proportional to wave amplitude produces exponential growth. While observed wave development can be parameterized to fit these functional forms and despite broad agreement on the underlying physical process of momentum transfer from the atmospheric boundary layer shear flow to the water waves by atmospheric pressure fluctuations, quantitative agreement between theory and field observations of wave growth has proved elusive. Notably, wave growth rates are observed to exceed laminar instability predictions under gusty conditions. In this work, a mechanism is described that produces the observed enhancement of growth rates in gusty conditions while reducing to laminar instability growth rates as gustiness vanishes. This stochastic parametric instability mechanism is an example of the universal process of destabilization of nearly all time-dependent flows.
A Dual-Weighted Approach to Order Reduction in 4DVAR Data Assimilation
Authors: Daescu D. N. , Navon I. M. 
Published: April 2008

Abstract
Strategies to achieve order reduction in four-dimensional variational data assimilation (4DVAR) search for an optimal low-rank state subspace for the analysis update. A common feature of the reduction methods proposed in atmospheric and oceanographic studies is that the identification of the basis functions relies on the model dynamics only, without properly accounting for the specific details of the data assimilation system (DAS). In this study a general framework of the proper orthogonal decomposition (POD) method is considered and a cost-effective approach is proposed to incorporate DAS information into the order-reduction procedure. The sensitivities of the cost functional in 4DVAR data assimilation with respect to the time-varying model state are obtained from a backward integration of the adjoint model. This information is further used to define appropriate weights and to implement a dual-weighted proper orthogonal decomposition (DWPOD) method for order reduction. The use of a weighted ensemble data mean and weighted snapshots using the adjoint DAS is a novel element in reduced-order 4DVAR data assimilation. Numerical results are presented with a global shallow-water model based on the Lin–Rood flux-form semi-Lagrangian scheme. A simplified 4DVAR DAS is considered in the twin-experiment framework with initial conditions specified from the 40-yr ECMWF Re-Analysis (ERA-40) datasets. A comparative analysis with the standard POD method shows that the reduced DWPOD basis may provide an increased efficiency in representing an a priori specified forecast aspect and as a tool to perform reduced-order optimal control. This approach represents a first step toward the development of an order-reduction methodology that combines in an optimal fashion the model dynamics and the characteristics of the 4DVAR DAS.
A Factorial Analysis of Storm Surge Flooding in Barrow, Alaska
Authors: Lynch Amanda H. , Lestak Leanne R. , Uotila Petteri , Cassano Elizabeth N. , Xie Lian 
Published: April 2008

Abstract
This paper describes work to improve the understanding of the broad range of factors affecting the occurrence of flooding in Barrow, Alaska, using as a basis the series of extreme events that have affected the community over the past 50 years. A numerical weather prediction model and a storm surge inundation model have been applied to the 21 case studies identified in National Weather Service data as high wind events. Based on this simulation work flow, a reduced-form model that adequately describes the flooding response has been developed. Specifically, it was found that when wind is forecast to be greater than 13 m s−1 (30 mph) for at least 20 h, this is the most accurate predictor of the possibility of damaging flood. It was found that wind direction, the magnitude of fetch to the sea ice edge (when present), and maximum wind speed were in contrast relatively small contributors to the likelihood of flooding.
Influence of Indian Ocean Dipole on Poleward Propagation of Boreal Summer Intraseasonal Oscillations
Authors: Ajayamohan R. S. , Rao Suryachandra A. , Yamagata Toshio 
Published: April 2008

Abstract
The influence of the Indian Ocean dipole (IOD) on the poleward propagation of boreal summer intraseasonal oscillations (BSISOs) is examined using observed datasets. This study finds that coherent (incoherent) poleward propagation of precipitation anomalies from 5°S to 25°N are observed during negative (positive) IOD years. Disorganized poleward propagation of BSISO in the south equatorial Indian Ocean is observed during positive IOD years. The rationale behind such an anomaly in the poleward propagation of BSISO in contrasting IOD years is identified based on the theory of northward-propagating BSISO, which suggests the influential role of air–sea interaction on the genesis and propagation of BSISO. It is found that the mean structure of moisture convergence and meridional specific humidity distribution undergoes radical changes in contrasting IOD years, which in turn influences the meridional propagation of BSISO. This study assumes significance, considering the critical role of BSISO in modulating the seasonal mean summer monsoon rainfall.
Precipitation Recycling: Moisture Sources over Europe using ERA-40 Data
Authors: Bisselink B. , Dolman A. J. 
Published: April 2008

Abstract
Atmospheric moisture within a region is supplied by both local evaporation and advected from external sources. The contribution of local evaporation in a region to the precipitation in the same region is defined as “precipitation recycling.” Precipitation recycling helps in defining the role of land–atmosphere interactions in regional climate. A dynamic precipitation recycling model, which includes the moisture storage term, has been applied to calculate summer variability of the precipitation recycling over Europe based on 40-yr European Centre for Medium-Range Weather Forecasts (ECMWF) Re-Analysis (ERA-40) data. Time series for three subregions in Europe (central Europe, the Balkans, and Spain) are obtained to analyze the variability in recycling and to compare the potential in the subregions for interactions between land surface and atmospheric processes. In addition, the recycled precipitation and recycling ratios are linked to several components of the water vapor balance equation [precipitation, evaporation, precipitation minus evaporation (P − E), and moisture transport]. It is found that precipitation recycling is large in dry summers for central Europe, while the opposite is true for the Balkans. Large precipitation recycling is determined in relation with weak moisture transport and high evaporation rates in central Europe. This occurs for dry summers. For the Balkans, precipitation recycling is large in wet summers when moisture transport is weak, and P − E and evaporation are large. Here, the recycling process intensifies the hydrological cycle due to a positive feedback via convective precipitation and therefore the amount of recycled precipitation is larger. For Spain, recycling is also larger when moisture transport is weak, but other correlations are not found. For regions such as central Europe in dry summers and the Balkans in wet summers, which are susceptible to land–atmosphere interactions, future climate and/or land use can have an impact on the regional climate conditions due to changes in evaporation.
Brightband Identification Based on Vertical Profiles of Reflectivity from the WSR-88D
Authors: Zhang Jian , Langston Carrie , Howard Kenneth 
Published: April 2008

Abstract
The occurrence of a bright band, a layer of enhanced reflectivity due to melting of aggregated snow, increases uncertainties in radar-based quantitative precipitation estimation (QPE). The height of the brightband layer is an indication of 0°C isotherm and can be useful in identifying areas of potential icing for aviation and in the data assimilation for numerical weather prediction (NWP). Extensive analysis of vertical profiles of reflectivity (VPRs) derived from the Weather Surveillance Radar-1988 Doppler (WSR-88D) base level data showed that the brightband signature could be easily identified from the VPRs. As a result, an automated brightband identification (BBID) scheme has been developed. The BBID algorithm can determine from a volume scan mean VPR and a background freezing level height from a numerical weather prediction model whether a bright band exists and the height of the brightband layer. The paper presents a description of the BBID scheme and evaluation results from a large dataset from WSR-88D radars in different geographical regions and seasons.
Horizontal-Velocity and Variance Measurements in the Stable Boundary Layer Using Doppler Lidar: Sensitivity to Averaging Procedures
Authors: Pichugina Yelena L. , Tucker Sara C. , Banta Robert M. , Brewer W. Alan , Kelley Neil D. , Jonkman Bonnie J. , Newsom Rob K. 
Published: April 2008

AbstractQuantitative data on turbulence variables aloft—above the region of the atmosphere conveniently measured from towers—have been an important but difficult measurement need for advancing understanding and modeling of the stable boundary layer (SBL). Vertical profiles of streamwise velocity variances obtained from NOAA’s high-resolution Doppler lidar (HRDL), which have been shown to be approximately equal to turbulence kinetic energy (TKE) for stable conditions, are a measure of the turbulence in the SBL. In the present study, the mean horizontal wind component U and variance σ2u were computed from HRDL measurements of the line-of-sight (LOS) velocity using a method described by Banta et al., which uses an elevation (vertical slice) scanning technique. The method was tested on datasets obtained during the Lamar Low-Level Jet Project (LLLJP) carried out in early September 2003, near the town of Lamar in southeastern Colorado.This paper compares U with mean wind speed obtained from sodar and sonic anemometer measurements. The results for the mean U and mean wind speed measured by sodar and in situ instruments for all nights of LLLJP show high correlation (0.71–0.97), independent of sampling strategies and averaging procedures, and correlation coefficients consistently &gt;0.9 for four high-wind nights, when the low-level jet speeds exceeded 15 m s−1 at some time during the night. Comparison of estimates of variance, on the other hand, proved sensitive to both the spatial and temporal averaging parameters. Several series of averaging tests are described, to find the best correlation between TKE calculated from sonic anemometer data at several tower levels and lidar measurements of horizontal-velocity variance σ2u. Because of the nonstationarity of the SBL data, the best results were obtained when the velocity data were first averaged over intervals of 1 min, and then further averaged over 3–15 consecutive 1-min intervals, with best results for the 10- and 15-min averaging periods. For these cases, correlation coefficients exceeded 0.9. As a part of the analysis, Eulerian integral time scales (τ) were estimated for the four high-wind nights. Time series of τ through each night indicated erratic behavior consistent with the nonstationarity. Histograms of τ showed a mode at 4–5 s, but frequent occurrences of larger τ values, mostly between 10 and 100 s.
Proteochemometric modeling of HIV protease susceptibility
Authors: Lapins Maris , Eklund Martin , Spjuth Ola , Prusis Peteris , Wikberg Jarl ES 
Published: April 2008

Abstract

Background
A major obstacle in treatment of HIV is the ability of the virus to mutate rapidly into drug-resistant variants. A method for predicting the susceptibility of mutated HIV strains to antiviral agents would provide substantial clinical benefit as well as facilitate the development of new candidate drugs. Therefore, we used proteochemometrics to model the susceptibility of HIV to protease inhibitors in current use, utilizing descriptions of the physico-chemical properties of mutated HIV proteases and 3D structural property descriptions for the protease inhibitors. The descriptions were correlated to the susceptibility data of 828 unique HIV protease variants for seven protease inhibitors in current use; the data set comprised 4792 protease-inhibitor combinations.

Results
The model provided excellent predictability (R
2 = 0.92, Q
2 = 0.87) and identified general and specific features of drug resistance. The model's predictive ability was verified by external prediction in which the susceptibilities to each one of the seven inhibitors were omitted from the data set, one inhibitor at a time, and the data for the six remaining compounds were used to create new models. This analysis showed that the over all predictive ability for the omitted inhibitors was Q
2

inhibitors
= 0.72.

Conclusion
Our results show that a proteochemometric approach can provide generalized susceptibility predictions for new inhibitors. Our proteochemometric model can directly analyze inhibitor-protease interactions and facilitate treatment selection based on viral genotype. The model is available for public use, and is located at HIV Drug Research Centre.
Immunomodulation of human monocytes following exposure to Lutzomyia intermedia saliva
Authors: Menezes Maria José , Costa Dirceu J , Clarêncio Jorge , Miranda José Carlos , Barral Aldina , Barral-Netto Manoel , Brodskyn Cláudia , de Oliveira Camila I 
Published: April 2008

AbstractBackgroundSand fly saliva contains potent and complex pharmacologic molecules that are able to modulate the host's hemostatic, inflammatory, and immune systems. In this study, we evaluated the effects of salivary gland sonicate (SGS) ofLutzomyia intermedia, the natural vector ofLeishmania braziliensis, on monocytes obtained from the peripheral blood mononuclear cells (PBMC) of healthy volunteers. We investigated the effects of sand fly saliva on cytokine production and surface molecule expression of LPS-stimulated human monocytes uninfected or infected withL. braziliensis.ResultsPre-treatment of non-infected human monocytes withL. intermediaSGS followed by LPS-stimulation led to a significant decrease in IL-10 production accompanied by a significant increase in CD86, CD80, and HLA-DR expression. Pre-treatment with SGS followed by LPS stimulation andL. braziliensisinfection led to a significant increase in TNF-α, IL-6, and IL-8 production without significant alterations in co-stimulatory molecule expression. However, pre-treatment withL. intermediaSGS did not result in significant changes in the infection rate of human monocytes.ConclusionOur data indicate thatL. intermediasaliva is able to modulate monocyte response, and, although this modulation is dissociated from enhanced infection withL. braziliensis, it may be associated with successful parasitism.