bluuebunny/crossref_metadata_2025_split huggingface dataset:
Social and cultural dimensions of rodent pest management
Authors: PALIS Florencia G. , SINGLETON Grant , SUMALDE Zenaida , HOSSAIN Mahabub 
Published: October 2007

AbstractRice production in Vietnam is threatened by rodent pests, with a significant increase in impact reported from 1990 through to the early 21st century. Pre‐harvest rice losses are typically 5–10%, with losses of >20% occurring in some years in some regions. Farmers' rodent control practices are generally reactive and rely essentially on chemical and physical methods. Ecologically‐based rodent pest management (EBRM) was developed in the late 1990s to manage rodents in rice‐based farming systems in Vietnam and other parts of South‐East Asia. EBRM combines both cultural and physical rodent management practices such as synchrony of cropping, short 2‐week rat campaigns at key periods in key habitats, increasing general hygiene around villages, and use of a community trap‐barrier system. Although EBRM has been reported to be economically profitable, the successful adoption of this set of technologies requires community participation. In this paper we address issues relating to the adoption and sustainability of EBRM in lowland irrigated rice fields in the Mekong Delta in Vietnam. We particularly explore the social and cultural mechanisms involved in maintaining community participation to further understand the conditions under which EBRM works and does not work. Positive indications of sustained use of community‐based EBRM include: a policy pronouncement from the prime minister directing the use of integrated rodent management; the use of existing cooperatives for developing community actions; budgetary allocation from provincial and local governments; diffusion of EBRM to provinces in the south and north that are not involved in farmer participatory field trials; and the adoption of EBRM by a non‐governmental organization, World Vision Vietnam, in their area‐development programs.
Beam Forming of Lamb Waves for Structural Health Monitoring
Authors: Olson Steven E. , DeSimio Martin P. , Derriso Mark M. 
Published: October 2007

AbstractStructural health monitoring techniques are being developed to reduce operations and support costs, increase availability, and maintain safety of current and future air vehicle systems. The use of Lamb waves, guided elastic waves in a plate, has shown promise in detecting localized damage, such as cracking or corrosion, due to the short wavelengths of the propagating waves. Lamb wave techniques have been utilized for structural health monitoring of simple plate and shell structures. However, most aerospace structures are significantly more complex and advanced techniques may be required. One advanced technique involves using an array of piezoelectric transducers to generate or sense elastic waves in the structure under inspection. By adjusting the spacing and/or phasing between the piezoelectric transducers, transmitted or received waves can be focused in a specific direction. This paper presents beam forming details based on analytical modeling, using the finite element method, and experimental testing, using an array of piezoelectric transducers on an aluminum panel. Results are shown to compare well to theoretical predictions.
On Minimal Norms onMn
Authors: Mirzavaziri Madjid , Moslehian Mohammad Sal 
Published: October 2007

We show that for each minimal normN(⋅)on the algebraℳnof alln×ncomplex matrices, there exist norms‖⋅‖1and‖⋅‖2onℂnsuch thatN(A)=max{‖Ax‖2:‖x‖1=1, x∈ℂn}for allA∈ℳn. This may be regarded as an extension of a known result on characterization of minimal algebra norms.
Using Neuroimaging to Resolve the Psi Debate
Authors: Moulton Samuel T. , Kosslyn Stephen M. 
Published: October 2007

Abstract
Parapsychology is the scientific investigation of apparently paranormal mental phenomena (such as telepathy, i.e., “mind reading”), also known as psi. Despite widespread public belief in such phenomena and over 75 years of experimentation, there is no compelling evidence that psi exists. In the present study, functional magnetic resonance imaging (fMRI) was used in an effort to document the existence of psi. If psi exists, it occurs in the brain, and hence, assessing the brain directly should be more sensitive than using indirect behavioral methods (as have been used previously). To increase sensitivity, this experiment was designed to produce positive results if telepathy, clairvoyance (i.e., direct sensing of remote events), or precognition (i.e., knowing future events) exist. Moreover, the study included biologically or emotionally related participants (e.g., twins) and emotional stimuli in an effort to maximize experimental conditions that are purportedly conducive to psi. In spite of these characteristics of the study, psi stimuli and non-psi stimuli evoked indistinguishable neuronal responses—although differences in stimulus arousal values of the same stimuli had the expected effects on patterns of brain activation. These findings are the strongest evidence yet obtained against the existence of paranormal mental phenomena.
Electrophysiological Measures of Time Processing in Infant and Adult Brains: Weber's Law Holds
Authors: Brannon Elizabeth M. , Libertus Melissa E. , Meck Warren H. , Woldorff Marty G. 
Published: October 2007

Abstract
Behavioral studies have demonstrated that time perception in adults, children, and nonhuman animals is subject to Weber's Law. More specifically, as with discriminations of other features, it has been found that it is the ratio between two durations rather than their absolute difference that controls the ability of an animal to discriminate them. Here, we show that scalp-recorded event-related electrical brain potentials (ERPs) in both adults and 10-month-old human infants, in response to changes in interstimulus interval (ISI), appear to obey the scalar property found in time perception in adults, children, and nonhuman animals. Using a timing-interval oddball paradigm, we tested adults and infants in conditions where the ratio between the standard and deviant interval in a train of homogeneous auditory stimuli varied such that there was a 1:4 (only for the infants), 1:3, 1:2, and 2:3 ratio between the standard and deviant intervals. We found that the amplitude of the deviant-triggered mismatch negativity ERP component (deviant-ISI ERP minus standard-ISI ERP) varied as a function of the ratio of the standard to deviant interval. Moreover, when absolute values were varied and ratio was held constant, the mismatch negativity did not vary.
Different Brain Circuits Underlie Motor and Perceptual Representations of Temporal Intervals
Authors: Bueti Domenica , Walsh Vincent , Frith Chris , Rees Geraint 
Published: October 2007

Abstract
In everyday life, temporal information is used for both perception and action, but whether these two functions reflect the operation of similar or different neural circuits is unclear. We used functional magnetic resonance imaging to investigate the neural correlates of processing temporal information when either a motor or a perceptual representation is used. Participants viewed two identical sequences of visual stimuli and used the information differently to perform either a temporal reproduction or a temporal estimation task. By comparing brain activity evoked by these tasks and control conditions, we explored commonalities and differences in brain areas involved in reproduction and estimation of temporal intervals. The basal ganglia and the cerebellum were commonly active in both temporal tasks, consistent with suggestions that perception and production of time are subserved by the same mechanisms. However, only in the reproduction task was activity observed in a wider cortical network including the right pre-SMA, left middle frontal gyrus, left premotor cortex, with a more reliable activity in the right inferior parietal cortex, left fusiform gyrus, and the right extrastriate visual area V5/MT. Our findings point to a role for the parietal cortex as an interface between sensory and motor processes and suggest that it may be a key node in translation of temporal information into action. Furthermore, we discuss the potential importance of the extrastriate cortex in processing visual time in the context of recent findings.
The Electrophysiological Dynamics of Interference during the Stroop Task
Authors: Hanslmayr Simon , Pastötter Bernhard , Bäuml Karl-Heinz , Gruber Sieglinde , Wimber Maria , Klimesch Wolfgang 
Published: October 2007

Abstract
If subjects are required to name the color of the word red printed in blue ink, interference between word meaning and ink color occurs, which slows down reaction time. This effect is well known as the Stroop effect. It is still an unresolved issue how the brain deals with interference in this type of task. To explore this question, an electroencephalogram (EEG) study was carried out. By analyzing several measures of EEG activity, two main findings emerged. First, the event-related potential (ERP) showed increased fronto-central negativity in a time window around 400 msec for incongruent items in contrast to congruent and neutral items. Source localization analysis revealed that a source in the anterior cingulate cortex (ACC) contributed most to the difference. Second, time-frequency analysis showed that theta oscillations (4–7 Hz) in the ACC increased linearly with increasing interference and that phase coupling between the ACC and the left prefrontal cortex was longer persistent for incongruent items compared to congruent and neutral items. These effects occurred at a time window around 600 msec. We conclude that interference between color naming and word meaning in the Stroop task manifests itself at around 400 msec and mainly activates the ACC. Thereafter, sustained phase coupling between the ACC and the prefrontal cortex occurs, which most likely reflects the engagement of cognitive control mechanisms.
Neural Substrates for Action Understanding at Different Description Levels in the Human Brain
Authors: Lestou Vaia , Pollick Frank E. , Kourtzi Zoe 
Published: October 2007

AbstractUnderstanding complex movements and abstract action goals is an important skill for our social interactions. Successful social interactions entail understanding of actions at different levels of action description, ranging from detailed movement trajectories that support learning of complex motor skills through imitation to distinct features of actions that allow us to discriminate between action goals and different action styles. Previous studies have implicated premotor, parietal, and superior temporal areas in action understanding. However, the role of these different cortical areas in action understanding at different levels of action description remains largely unknown. We addressed this question using advanced animation and stimulus generation techniques in combination with sensitive functional magnetic resonance imaging adaptation or repetition suppression methods. We tested the neural sensitivity of fronto-parietal and visual areas to differences in the kinematics and goals of actions using kinematic morphs of arm movements. Our findings provide novel evidence for differential involvement of ventral premotor, parietal, and temporal regions in action understanding. We show that the ventral premotor cortex encodes the physical similarity between movement trajectories and action goals that are important for exact copying of actions and the acquisition of complex motor skills. In contrast, whereas parietal regions and the superior temporal sulcus process the perceptual similarity between movements and may support the perception and imitation of abstract action goals and movement styles. Thus, our findings propose that fronto-parietal and visual areas involved in action understanding mediate a cascade of visual-motor processes at different levels of action description from exact movement copies to abstract action goals achieved with different movement styles.
Visuotactile Learning and Body Representation: An ERP Study with Rubber Hands and Rubber Objects
Authors: Press Clare , Heyes Cecilia , Haggard Patrick , Eimer Martin 
Published: October 2007

Abstract
We studied how the integration of seen and felt tactile stimulation modulates somatosensory processing, and investigated whether visuotactile integration depends on temporal contiguity of stimulation, and its coherence with a preexisting body representation. During training, participants viewed a rubber hand or a rubber object that was tapped either synchronously with stimulation of their own hand, or in an uncorrelated fashion. In a subsequent test phase, somatosensory event-related potentials (ERPs) were recorded to tactile stimulation of the left or right hand, to assess how tactile processing was affected by previous visuotactile experience during training. An enhanced somatosensory N140 component was elicited after synchronous, compared with uncorrelated, visuotactile training, irrespective of whether participants viewed a rubber hand or rubber object. This early effect of visuotactile integration on somatosensory processing is interpreted as a candidate electro-physiological correlate of the rubber hand illusion that is determined by temporal contiguity, but not by preexisting body representations. ERP modulations were observed beyond 200 msec poststimulus, suggesting an attentional bias induced by visuotactile training. These late modulations were absent when the stimulation of a rubber hand and the participant's own hand was uncorrelated during training, suggesting that preexisting body representations may affect later stages of tactile processing.
Rhetorical and Scientific Aspects of the Nicomachean Ethics
Authors: Natali Carlo 
Published: October 2007

AbstractThere are fields of research on NE which still need attention: the edition of the text the style and rhetorical and logical instruments employed by Aristotle in setting out his position. After indicating the situation of the research on the text of NE, I describe some rhetorical devices used by Aristotle in his work: the presence of a preamble, clues about how the argument will be developed, a tendency to introduce new arguments in an inconspicuous way and the articulation of general definitions through more specific analyses. At a deeper level NE seems to be organised on the model of investigating definitions described in the second Book of the Posterior Analytics, and not according the so-called 'dialectical method'. In conclusion I argue that NE is not an early or a confused work, as some scholars maintain, but rather a skilful construction, the fruit of a mature intelligence.
Brain parenchyma involvement as isolated central nervous system relapse of systemic non-Hodgkin lymphoma: an International Primary CNS Lymphoma Collaborative Group report
Authors: Doolittle Nancy D. , Abrey Lauren E. , Shenkier Tamara N. , Tali Siegal , Bromberg Jacoline E.C. , Neuwelt Edward A. , Soussain Carole , Jahnke Kristoph , Johnston Patrick , Illerhaus Gerald , Schiff David , Batchelor Tracy , Montoto Silvia , Kraemer Dale F. , Zucca Emanuele 
Published: October 2007

Abstract
Isolated central nervous system (CNS) relapse involving the brain parenchyma is a rare complication of systemic non-Hodgkin lymphoma. We retrospectively analyzed patient characteristics, management, and outcomes of this complication. After complete response to initial non-Hodgkin lymphoma treatment, patients with isolated CNS relapse with the brain parenchyma as initial relapse site were eligible. Patients with isolated CNS relapse involving only the cerebrospinal fluid were not eligible. Information on 113 patients was assembled from 13 investigators; 94 (83%) had diffuse large B-cell lymphoma. Median time to brain relapse was 1.8 years (range, 0.25-15.9 years). Brain relapse was identified by neuroimaging in all patients; in 54 (48%), diagnostic brain tumor specimen was obtained. Median overall survival from date of brain relapse was 1.6 years (95% confidence interval, 0.9-2.6 years); 26 (23%) have survived 3 years or more. Median time to progression was 1.0 year (95% confidence interval, 0.7-1.7 years). Age less than 60 years (P = .006) at relapse and methotrexate use (P = .008) as front-line treatment for brain relapse were significantly associated with longer survival in a multivariate model. Our results suggest systemic methotrexate is the optimal treatment for isolated CNS relapse involving the brain parenchyma. Long-term survival is possible in some patients.
Angiogenesis is regulated by a novel mechanism: pro- and antiangiogenic proteins are organized into separate platelet α granules and differentially released
Authors: Italiano Joseph E. , Richardson Jennifer L. , Patel-Hett Sunita , Battinelli Elisabeth , Zaslavsky Alexander , Short Sarah , Ryeom Sandra , Folkman Judah , Klement Giannoula L. 
Published: October 2007

Abstract
Platelets, in addition to their function in hemostasis, play an important role in wound healing and tumor growth. Because platelets contain angiogenesis stimulators and inhibitors, the mechanisms by which platelets regulate angiogenesis remain unclear. As platelets adhere to activated endothelium, their action can enhance or inhibit local angiogenesis. We therefore suspected a higher organization of angiogenesis regulators in platelets. Using double immunofluorescence and immunoelectron microscopy, we show that pro- and antiangiogenic proteins are separated in distinct subpopulations of α-granules in platelets and megakaryocytes. Double immunofluorescence labeling of vascular endothelial growth factor (VEGF) (an angiogenesis stimulator) and endostatin (an angiogenesis inhibitor), or for thrombospondin-1 and basic fibroblast growth factor, confirms the segregation of stimulators and inhibitors into separate and distinct α-granules. These observations motivated the hypothesis that distinct populations of α-granules could undergo selective release. The treatment of human platelets with a selective PAR4 agonist (AYPGKF-NH2) resulted in release of endostatin-containing granules, but not VEGF-containing granules, whereas the selective PAR1 agonist (TFLLR-NH2) liberated VEGF, but not endostatin-containing granules. In conclusion, the separate packaging of angiogenesis regulators into pharmacologically and morphologically distinct populations of α-granules in megakaryocytes and platelets may provide a mechanism by which platelets can locally stimulate or inhibit angiogenesis.
BMDExpress: a software tool for the benchmark dose analyses of genomic data
Authors: Yang Longlong , Allen Bruce C , Thomas Russell S 
Published: October 2007

AbstractBackgroundDose-dependent processes are common within biological systems and include phenotypic changes following exposures to both endogenous and xenobiotic molecules. The use of microarray technology to explore the molecular signals that underlie these dose-dependent processes has become increasingly common; however, the number of software tools for quantitatively analyzing and interpreting dose-response microarray data has been limited.ResultsWe have developed BMDExpress, a Java application that combines traditional benchmark dose methods with gene ontology classification in the analysis of dose-response data from microarray experiments. The software application is designed to perform a stepwise analysis beginning with a one-way analysis of variance to identify the subset of genes that demonstrate significant dose-response behavior. The second step of the analysis involves fitting the gene expression data to a selection of standard statistical models (linear, 2° polynomial, 3° polynomial, and power models) and selecting the model that best describes the data with the least amount of complexity. The model is then used to estimate the benchmark dose at which the expression of the gene significantly deviates from that observed in control animals. Finally, the software application summarizes the statistical modeling results by matching each gene to its corresponding gene ontology categories and calculating summary values that characterize the dose-dependent behavior for each biological process and molecular function. As a result, the summary values represent the dose levels at which genes in the corresponding cellular process show transcriptional changes.ConclusionThe application of microarray technology together with the BMDExpress software tool represents a useful combination in characterizing dose-dependent transcriptional changes in biological systems. The software allows users to efficiently analyze large dose-response microarray studies and identify reference doses at which particular cellular processes are altered. The software is freely available athttp://sourceforge.net/projects/bmdexpress/and is distributed under the MIT Public License.
EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome
Authors: Thibaud-Nissen Françoise , Campbell Matthew , Hamilton John P , Zhu Wei , Buell C Robin 
Published: October 2007

Abstract

Background
Despite the improvements of tools for automated annotation of genome sequences, manual curation at the structural and functional level can provide an increased level of refinement to genome annotation. The Institute for Genomic Research Rice Genome Annotation (hereafter named the Osa1 Genome Annotation) is the product of an automated pipeline and, for this reason, will benefit from the input of biologists with expertise in rice and/or particular gene families. Leveraging knowledge from a dispersed community of scientists is a demonstrated way of improving a genome annotation. This requires tools that facilitate 1) the submission of gene annotation to an annotation project, 2) the review of the submitted models by project annotators, and 3) the incorporation of the submitted models in the ongoing annotation effort.

Results
We have developed the Eukaryotic Community Annotation Package (EuCAP), an annotation tool, and have applied it to the rice genome. The primary level of curation by community annotators (CA) has been the annotation of gene families. Annotation can be submitted by email or through the EuCAP Web Tool. The CA models are aligned to the rice pseudomolecules and the coordinates of these alignments, along with functional annotation, are stored in the MySQL EuCAP Gene Model database. Web pages displaying the alignments of the CA models to the Osa1 Genome models are automatically generated from the EuCAP Gene Model database. The alignments are reviewed by the project annotators (PAs) in the context of experimental evidence. Upon approval by the PAs, the CA models, along with the corresponding functional annotations, are integrated into the Osa1 Genome Annotation. The CA annotations, grouped by family, are displayed on the Community Annotation pages of the project website http://rice.tigr.org, as well as in the Community Annotation track of the Genome Browser.

Conclusion
We have applied EuCAP to rice. As of July 2007, the structural and/or functional annotation of 1,094 genes representing 57 families have been deposited and integrated into the current gene set. All of the EuCAP components are open-source, thereby allowing the implementation of EuCAP for the annotation of other genomes. EuCAP is available at http://sourceforge.net/projects/eucap/.