bluuebunny/crossref_metadata_2025_split huggingface dataset:
Comprehensive data analysis of white blood cells with classification and segmentation by using deep learning approaches
Authors: Özcan Şeyma Nur , Uyar Tansel , Karayeğen Gökay 
Published: April 2024

AbstractDeep learning approaches have frequently been used in the classification and segmentation of human peripheral blood cells. The common feature of previous studies was that they used more than one dataset, but used them separately. No study has been found that combines more than two datasets to use together. In classification, five types of white blood cells were identified by using a mixture of four different datasets. In segmentation, four types of white blood cells were determined, and three different neural networks, including CNN (Convolutional Neural Network), UNet and SegNet, were applied. The classification results of the presented study were compared with those of related studies. The balanced accuracy was 98.03%, and the test accuracy of the train‐independent dataset was determined to be 97.27%. For segmentation, accuracy rates of 98.9% for train‐dependent dataset and 92.82% for train‐independent dataset for the proposed CNN were obtained in both nucleus and cytoplasm detection. In the presented study, the proposed method showed that it could detect white blood cells from a train‐independent dataset with high accuracy. Additionally, it is promising as a diagnostic tool that can be used in the clinical field, with successful results in classification and segmentation.
Performance analysis of massive MIMO using various transmit precoding schemes for a wireless network
Authors: Dastoor Sarosh , Patel Hemil 
Published: April 2024

SummaryAn evaluation of various transmit precoding schemes is proposed in this thesis on basis of spectral efficiency (SE) of massive MIMO (m‐MIMO) system in 2 GHz spectrum. The present generation of wireless networks must be rethought due to the rapidly rising user base, huge volume data transfer, wide coverage requirement, and exponential rise in data rate. 5G mobile network includes a multi‐fold increase in network capacity, energy conservation, decreased latency, higher coverage probability, and a seamless connection. m‐MIMO has provided good solution for enhancing the data rate with the coverage, overcoming the effects of multipath fading and has also increased diversity of the system. Massiveness of MIMO system along with 5G network is the key technology to address the issue of SE, throughput, improvement of QoS (quality of service), coverage probability, power delay profile, diversity simulation, energy efficiency, and improvement in bit error rate. Parameters such as SE, throughput, and coverage probability are important for any communication system, and their improvement can increase overall capacity of cellular network system and could meet the requirement of upcoming demand for mobile network. The research paper is focused on performance analysis of m‐MIMO with reference to the SE of various transmit precoding schemes. Simulation results show that SE provided by M‐MMSE (multi‐cell minimum mean‐squared error) technique of precoding ranks highest for the same number of antennas and pilot reuse factor as compared to other schemes.
Frequent and strong cold‐air pooling drives temperate forest composition
Authors: Pastore Melissa A. , Classen Aimée T. , D'Amato Anthony W. , English Marie E. , Rand Karin , Foster Jane R. , Adair E. Carol 
Published: April 2024

AbstractCold‐air pooling is an important topoclimatic process that creates temperature inversions with the coldest air at the lowest elevations. Incomplete understanding of sub‐canopy spatiotemporal cold‐air pooling dynamics and associated ecological impacts hinders predictions and conservation actions related to climate change and cold‐dependent species and functions. To determine if and how cold‐air pooling influences forest composition, we characterized the frequency, strength, and temporal dynamics of cold‐air pooling in the sub‐canopy at local to regional scales in New England, USA. We established a network of 48 plots along elevational transects and continuously measured sub‐canopy air temperatures for 6–10 months (depending on site). We then estimated overstory and understory community temperature preferences by surveying tree composition in each plot and combining these data with known species temperature preferences. We found that cold‐air pooling was frequent (19–43% seasonal occurrences) and that sites with the most frequent inversions displayed inverted forest composition patterns across slopes with more cold‐adapted species, namely conifers, at low instead of high elevations. We also observed both local and regional variability in cold‐air pooling dynamics, revealing that while cold‐air pooling is common, it is also spatially complex. Our study, which uniquely focused on broad spatial and temporal scales, has revealed some rarely reported cold‐air pooling dynamics. For instance, we discovered frequent and strong temperature inversions that occurred across seasons and in some locations were most frequent during the daytime, likely affecting forest composition. Together, our results show that cold‐air pooling is a fundamental ecological process that requires integration into modeling efforts predicting future forest vegetation patterns under climate change, as well as greater consideration for conservation strategies identifying potential climate refugia for cold‐adapted species.
Synchrotron‐source micro‐x‐ray computed tomography for examining butterfly eyes
Authors: Paukner Dawn , Wildenberg Gregg A. , Badalamente Griffin S. , Littlewood Peter B. , Kronforst Marcus R. , Palmer Stephanie E. , Kasthuri Narayanan 
Published: April 2024

AbstractComparative anatomy is an important tool for investigating evolutionary relationships among species, but the lack of scalable imaging tools and stains for rapidly mapping the microscale anatomies of related species poses a major impediment to using comparative anatomy approaches for identifying evolutionary adaptations. We describe a method using synchrotron source micro‐x‐ray computed tomography (syn‐μXCT) combined with machine learning algorithms for high‐throughput imaging of Lepidoptera (i.e., butterfly and moth) eyes. Our pipeline allows for imaging at rates of ~15 min/mm3 at 600 nm3 resolution. Image contrast is generated using standard electron microscopy labeling approaches (e.g., osmium tetroxide) that unbiasedly labels all cellular membranes in a species‐independent manner thus removing any barrier to imaging any species of interest. To demonstrate the power of the method, we analyzed the 3D morphologies of butterfly crystalline cones, a part of the visual system associated with acuity and sensitivity and found significant variation within six butterfly individuals. Despite this variation, a classic measure of optimization, the ratio of interommatidial angle to resolving power of ommatidia, largely agrees with early work on eye geometry across species. We show that this method can successfully be used to determine compound eye organization and crystalline cone morphology. Our novel pipeline provides for fast, scalable visualization and analysis of eye anatomies that can be applied to any arthropod species, enabling new questions about evolutionary adaptations of compound eyes and beyond.
Native prey, not landscape change or novel prey, drive cougar (Puma concolor) distribution at a boreal forest range edge
Authors: Gaston Millicent V. , Barnas Andrew F. , Smith Rebecca M. , Murray Sean , Fisher Jason T. 
Published: April 2024

AbstractMany large carnivores, despite widespread habitat alteration, are rebounding in parts of their former ranges after decades of persecution and exploitation. Cougars (Puma concolor) are apex predator with their remaining northern core range constricted to mountain landscapes and areas of western North America; however, cougar populations have recently started rebounding in several locations across North America, including northward in boreal forest landscapes. A camera‐trap survey of multiple landscapes across Alberta, Canada, delineated a range edge; within this region, we deployed an array of 47 camera traps in a random stratified design across a landscape spanning a gradient of anthropogenic development relative to the predicted expansion front. We completed multiple hypotheses in an information‐theoretic framework to determine if cougar occurrence is best explained by natural land cover features, anthropogenic development features, or competitor and prey activity. We predicted that anthropogenic development features from resource extraction and invading white‐tailed deer (Odocoileus virgianius) explain cougar distribution at this boreal range edge. Counter to our predictions, the relative activity of native prey, predominantly snowshoe hare (Lepus americanus), was the best predictor of cougar occurrence at this range edge. Small‐bodied prey items are particularly important for female and sub‐adult cougars and may support breeding individuals in the northeast boreal forest. Also, counter to our predictions, there was not a strong relationship detected between cougar occurrence and gray wolf (Canis lupus) activity at this range edge. However, further investigation is recommended as the possibility of cougar expansion into areas of the multi‐prey boreal system, where wolves have recently been controlled, could have negative consequences for conservation goals in this region (e.g. the recovery of woodland caribou [Rangifer tarandus caribou]). Our study highlights the need to monitor contemporary distributions to inform conservation management objectives as large carnivores recover across North America.
A Family of Lanthanoid‐Sodium Multifunctional Coordination Polymers: Single‐Molecule Magnet, Luminescent and Magnetocaloric Properties
Authors: Troyano Alejandro Cuesta , González Jonay , Arauzo Ana , Bartolomé Elena , Sañudo E. Carolina 
Published: April 2024

AbstractIn this paper we report the microwave assisted synthesis and characterization of a family of Na−Ln coordination polymers (CPs) of formula [NaDy2(MeCOO)2(SALOH)5(chpH)2] (1Ln, Ln=Eu, Gd, Tb, Dy, Ho, Y). The Na+ cations isolate Ln2 units in a one‐dimensional polymer. By changing the lanthanoid ions, we attain Single Molecule Magnet properties (1Dy), luminescent properties (1Eu, 1Tb, 1Ho), a diamagnetic material (1Y) and a material that presents magnetocaloric effect (1Gd).
2‐Thiophenyl–Isoquinoline Ir(III) Complex: A Promising Tool in Antipseudomonal Photodynamic Therapy under Red Irradiation
Authors: Renault Julien , Couchot Julie , Faucon Aline L. , Renaud Jean‐Luc , Mislin Gaëtan L. A. , Plésiat Patrick , Gaillard Sylvain 
Published: April 2024

AbstractInnovative therapeutic strategies are more than ever needed to counter the rise of antibiotic–resistant bacterial pathogens worldwide. The use of light, and especially photodynamic therapy (PDT) appears as a promising alternative or complement to antibiotic treatments, fostered by the development of new photosensitizers. In this study, eight Ir(III) complexes were synthesized and evaluated for their photoactivation properties and capacity to generate radical species under blue (452 nm), green (525 nm), and red (631 nm) LED light, respectively. Their antibacterial properties were assessed on Pseudomonas aeruginosa, Acinetobacter baumannii, Escherichia coli, and Staphylococcus aureus with most of these complexes exhibiting potentially useful activities upon light irradiation, at concentrations below 10 mg/L. A complex of Ir(III) cyclometallated to thiophenyl–isoquinoline (tiq) and bearing 2,2’‐bipyridine (bipy) as ancillary ligand was further investigated. This latter showed a concentration‐ and light intensity–dependent bactericidal activity on P. aeruginosa when irradiated under blue to red lights, proving that such complexes would be suitable candidates for PDT. Importantly, this lead complex remained active against antibiotic resistant clinical strains and was unaffected by active efflux systems. These data open interesting perspectives for the development of new treatments to tackle antibiotic resistant Gram–negative bacteria.
Theoretical analysis and numerical study of natural convection inside combined solar chimney
Authors: Cui Huimin , Han Mengjiao , Zhang Jitao , Han Zhiming , Xu Feng , Liu Qingkuan 
Published: April 2024

AbstractSolar chimneys may induce natural ventilation through solar radiation. However, sufficient theoretical studies are needed as a basis to fully exploit passive design in practical green building design. In this work, we investigate the heat transfer properties of turbulent natural convective flows in a combined solar chimney with a thermal flux at the absorption wall by means of theoretical analysis and numerical simulations. Two different flow patterns have been found, one with a clear thermal boundary layer flow pattern and the other without, based on high Rayleigh numbers. For flow development in these two flow regimes, the transient scaling analysis is performed separately and the control mechanism for each phase is presented. Some new scale relationships are established to characterize the ventilation performance of solar chimneys, including thermal boundary layer thickness δT, velocity vT, mass flow m, and so on. For the distinct thermal boundary layers, δT,s ~ HΓ2/5/Bo1/5κ2/5, vT,s ~ Bo2/5κ4/5Γ1/5/H, m ~ ρBo1/5κ2/5Γ3/5. For nonobvious thermal boundary layers, vT,f ~ Bo1/3κ/H2/3W1/3, m ~ ρBo1/3κ/A2/3. The important scale relationships are validated using corresponding numerical simulation data, such as the mass flow rate scale M ~ (Γ/κ)3/5Bo1/5 in the distinct thermal boundary layer flow state, and so on. The air changes per hour and heat exchange efficiencies are calculated for a solar chimney with a fixed height‐to‐width ratio to provide a basis for the design of a solar chimney.
Theabrownin alleviates nonalcoholic fatty liver disease by inhibiting the intestinal farnesoid X receptor–ceramide axis
Authors: Wang Jieyi , Zheng Dan , Ge Kun , Huang Fengjie , Li Yang , Zheng Xiaojiao , Jia Wei , Zhao Aihua 
Published: April 2024

AbstractTheabrownin (TB), which is derived from Pu‐erh tea and previously recognized as an intestinal farnesoid X receptor (FXR) antagonist, is known to have favorable effects on metabolic diseases such as hyperlipidemia and obesity. However, the mechanisms underlying the beneficial effects of TB in nonalcoholic fatty liver disease (NAFLD) require further exploration. This study aimed to use an NAFLD mouse model to evaluate changes in hepatic steatosis via the intestinal FXR–ceramide (Cer) axis following treatment with TB. The results indicated that TB alleviated hepatic steatosis and reduced total Cer levels in NAFLD mice. In particular, the levels of Cer(d18:1/16:0) in the intestine and liver were significantly reduced, which is considered to play a vital role in aggravating NAFLD. Furthermore, the transcriptional expression of Cer synthetase was markedly downregulated following treatment with TB or FXR antagonist, but this expression was reversed following treatment with a specific intestinal FXR agonist. These results indicate that TB alleviates NAFLD by reducing Cer levels via the inhibition of the intestinal FXR–Cer synthetase pathway.
Multi‐omic analysis reveals genes and proteins integral to bioactivity of Echinochrome A isolated from the waste stream of the sea urchin industry in Aotearoa New Zealand
Authors: Hammond Joseph , Das Isabella M. , Paenga Ruihana , Caddie Manu , Skinner Damian , Sheridan Jeffrey P. , Miller Matthew R. , Munkacsi Andrew B. 
Published: April 2024

AbstractEvechinus chloroticus (commonly known as kina) is a sea urchin species endemic to New Zealand. Its roe is a culinary delicacy to the indigenous Māori and a globally exported food product. Echinochrome A (Ech A) is a bioactive compound isolated from the waste product of kina shells and spines; however, the molecular mechanisms of Ech A bioactivity are not well understood, partly due to Ech A never being studied using unbiased genome‐wide analysis. To explore the high‐value pharmaceutical potential of kina food waste, we obtained unbiased functional genomic and proteomic profiles of yeast cells treated with Echinochrome A. Abundance was measured for 4100 proteins every 30 min for four hours using fluorescent microscopy, resulting in the identification of 92 proteins with significant alterations in protein abundance caused by Ech A treatment that were over‐represented with specific changes in DNA replication, repair and RNA binding after 30 min, followed by specific changes in the metabolism of metal ions (specifically iron and copper) from 60–240 min. Further analysis indicated that Ech A chelated iron, and that iron supplementation negated the growth inhibition caused by Ech A. Via a growth‐based genome‐wide analysis of 4800 gene deletion strains, 20 gene deletion strains were sensitive to Ech A in an iron‐dependent manner. These genes were over‐represented in the cellular response to oxidative stress, suggesting that Ech A suppressed growth inhibition caused by oxidative stress. Unexpectedly, genes integral to cardiolipin and inositol phosphate biosynthesis were required for Ech A bioactivity. Overall, these results identify genes, proteins, and cellular processes mediating the bioactivity of Ech A. Moreover, we demonstrate unbiased genomic and proteomic methodology that will be useful for characterizing bioactive compounds in food and food waste.
Ultra‐Processed food intake and risk of Helicobacter pylori infection: A case–control study
Authors: Ebrahimi Zohreh , Shateri Zainab , Nouri Mehran , Sikaroudi Masoumeh Khalighi , Masoodi Mohsen , Shidfar Farzad , Hejazi Mahdi 
Published: April 2024

AbstractThe components in our food are known as one of the important risk factors for the development of Helicobacter pylori (H. pylori) infection. A balanced diet, rich in fruits and vegetables, and free of fat, sugar, and salt, might protect people from the consequences of H. pylori infection. Therefore, the purpose of this study was to investigate the associations between ultra‐processed foods (UPFs) intake and the risk of H. pylori infection. The case–control study was conducted to assess the intake of UPFs in patients with H. pylori infection compared with healthy individuals. The dietary data of the contributors were collected by a validated food frequency questionnaire (FFQ). To estimate the UPFs intake, the classification of the NOVA food group was utilized. The associations of intake UPFs with H. pylori infection were assessed using binary logistic regression. Finally, dietary data of 150 cases and 302 controls (mean age: 39.5 ± 10.95 years) were analyzed. UPFs intake was associated with higher risk of H. pylori infection (odds ratio (OR) = 1.71; 95% confidence interval (CI): 1.05, 2.79). The association remained constant after adjustment for age, body mass index (BMI), sex, energy intake, physical activity, smoking, and alcohol status (OR = 2.17; 95% CI: 1.22, 3.86). Our data declare that UPFs consumption could have a role in increasing the likelihood of the risk of H. pylori infection. To confirm the current findings, prospective studies are suggested.
Telemedicine‐enabled biofeedback electropalatography rehabilitation (TEBER): A pilot study for patients treated with surgery for oral cavity carcinoma
Authors: Chepeha Douglas B. , Barbon Carly E. A. , Esemezie Alex O. , Al Mardini Majd , Philteos Justine , Spector Matthew E. , Bressmann Tim , Martino Rosemary , Bratman Scott V. , Cho John B. C. , Hope Andrew J. , Hosni Ali Abdalati , Kim John J. H. , Ringash Jolie G. , Waldron John N. , Brown Dale H. , de Almeida John R. , Gilbert Ralph W. , Goldstein David P. , Gullane Patrick J. , Irish Jonathan C. , Monteiro Eric A. , Yao Christopher M. K. L. 
Published: April 2024

AbstractBackgroundTo address the rehabilitative barriers to frequency and precision of care, we conducted a pilot study of a biofeedback electropalatography (EPG) device paired with telemedicine for patients who underwent primary surgery +/− adjuvant radiation for oral cavity carcinoma. We hypothesized that lingual optimization followed by telemedicine‐enabled biofeedback electropalatography rehabilitation (TEBER) would further improve speech and swallowing outcomes after “standard‐of‐care” SOC rehabilitation.MethodPilot prospective 8‐week (TEBER) program following 8 weeks of (SOC) rehabilitation.ResultsTwenty‐seven patients were included and 11 completed the protocol. When examining the benefit of TEBER independent of standard of care, “range‐of‐liquids” improved by +0.36 [95% CI, 0.02–0.70, p = 0.05] and “range‐of‐solids” improved by +0.73 [95% CI, 0.12–1.34, p = 0.03]. There was a positive trend toward better oral cavity obliteration; residual volume decreased by −1.2 [95% CI, −2.45 to 0.053, p = 0.06], and “nutritional‐mode” increased by +0.55 [95% CI, −0.15 to 1.24, p = 0.08].ConclusionThis pilot suggests that TEBER bolsters oral rehabilitation after 8 weeks of SOC lingual range of motion.
Relationship among weather variation, agricultural production, and migration: A systematic methodological review
Authors: Sarker Bishwajit , Alam Masud , Uddin Md. Jamal 
Published: April 2024

AbstractBackground and AimsTwo main problems the globe currently facing are migration and weather variation. Weather change has a significant impact on the agricultural industry, which affects the majority of poor people. There is a dearth of adequate methodological documentation when examining the relationship between weather variation, agricultural output, and migration. We aimed to identify methodological reporting difficulties by reviewing the quantitative literature on weather‐related migration through agricultural channels.MethodsA systematic evaluation was conducted using papers published between January 2010 and June 2022, indexed in the SCOPUS, PUBMED, and Google Scholar databases. Using inclusion/exclusion criteria, we selected 22 original research articles out of 18,929 distinct articles for review, in accordance with the PRISMA guidelines. We extracted data from each study to understand how various concepts, research designs, and investigative techniques influence our understanding of migration patterns related to weather in the agricultural sector.ResultsThe majority (64%) of the study's data consisted of time series data. In 50% of the studies, secondary data were used. Additionally, 55% of these studies did not state the sample size. In 40% of the studies, model assumptions were fully adhered to, whereas in 36% of the studies, they were not followed at all. The majority of the articles used the Ordinary Least Squares technique, while about 41% applied the Two‐Stage Least Squares technique. Various tests were conducted across these studies, such as robustness checks (59.1%), endogeneity tests (31.8%), omitted variable bias tests (22.7%), sensitivity analyses (22.7%), and weak instrument tests (13.6%), to name a few. In the research we selected, the methodology section had various shortcomings and lacked organization. Furthermore, the justifications for deviations from model assumptions were unclear, potentially affecting the study outcomes.ConclusionThis study has important indications for researchers in studying climatic (weather) migration through agricultural channels besides for policymakers by giving a thorough review of the methods and techniques.