bluuebunny/crossref_metadata_2025_split huggingface dataset:
Down-regulation of MKP-1 in hippocampus protects against stress-induced depression-like behaviors and neuroinflammation
Authors: Geng Mengjun , Shao Qiujing , Fu Jiacheng , Gu Jingyang , Feng Laipeng , Zhao Liqin , Liu Cong , Mu Junlin , Zhang Xiaoli , Zhao Mingjun , Guo Xinsheng , Song Cai , Li Yan , Wang Huiying , Wang Changhong 
Published: March 2024

AbstractChronic stress is the primary environmental risk factor for major depressive disorder (MDD), and there is compelling evidence that neuroinflammation is the major pathomechanism linking chronic stress to MDD. Mitogen-activated protein kinase (MAPK) phosphatase-1 (MKP-1) is a negative regulator of MAPK signaling pathways involved in cellular stress responses, survival, and neuroinflammation. We examined the possible contributions of MKP-1 to stress-induced MDD by comparing depression-like behaviors (anhedonia, motor retardation, behavioral despair), neuroinflammatory marker expression, and MAPK signaling pathways among rats exposed to chronic unpredictable mild stress (CUMS), overexpressing MKP-1 in the hippocampus, and CUMS-exposed rats underexpressing MKP-1 in the hippocampus. Rats exposed to CUMS exhibited MKP-1 overexpression, greater numbers of activated microglia, and enhanced expressions of neuroinflammatory markers (interleukin [IL]-6, [IL]-1β, tumor necrosis factor [TNF]-ɑ, and decreased phosphorylation levels of ERK and p38 in the hippocampus as well as anhedonia in the sucrose preference test, motor retardation in the open field, and greater immobility (despair) in the forced swimming tests. These signs of neuroinflammation and depression-like behaviors and phosphorylation levels of ERK and p38 were also observed in rats overexpressing MKP-1 without CUMS exposure, while CUMS-induced neuroinflammation, microglial activation, phosphorylation levels of ERK and p38, and depression-like behaviors were significantly reversed by MKP-1 knockdown. Moreover, MKP-1 knockdown promoted the activation of the MAPK isoform ERK, implying that the antidepressant-like effects of MKP-1 knockdown may be mediated by the ERK pathway disinhibition. These findings suggested that hippocampal MKP-1 is an essential regulator of stress-induced neuroinflammation and a promising target for antidepressant development.
Caspase-2 protects against ferroptotic cell death
Authors: Dawar Swati , Benitez Mariana C. , Lim Yoon , Dite Toby A. , Yousef Jumana M. , Thio Niko , Garciaz Sylvain , Jackson Thomas D. , Milne Julia V. , Dagley Laura F. , Phillips Wayne A. , Kumar Sharad , Clemons Nicholas J. 
Published: March 2024

AbstractCaspase-2, one of the most evolutionarily conserved members of the caspase family, is an important regulator of the cellular response to oxidative stress. Given that ferroptosis is suppressed by antioxidant defense pathways, such as that involving selenoenzyme glutathione peroxidase 4 (GPX4), we hypothesized that caspase-2 may play a role in regulating ferroptosis. This study provides the first demonstration of an important and unprecedented function of caspase-2 in protecting cancer cells from undergoing ferroptotic cell death. Specifically, we show that depletion of caspase-2 leads to the downregulation of stress response genes including SESN2, HMOX1, SLC7A11, and sensitizes mutant-p53 cancer cells to cell death induced by various ferroptosis-inducing compounds. Importantly, the canonical catalytic activity of caspase-2 is not required for its role and suggests that caspase-2 regulates ferroptosis via non-proteolytic interaction with other proteins. Using an unbiased BioID proteomics screen, we identified novel caspase-2 interacting proteins (including heat shock proteins and co-chaperones) that regulate cellular responses to stress. Finally, we demonstrate that caspase-2 limits chaperone-mediated autophagic degradation of GPX4 to promote the survival of mutant-p53 cancer cells. In conclusion, we document a novel role for caspase-2 as a negative regulator of ferroptosis in cells with mutant p53. Our results provide evidence for a novel function of caspase-2 in cell death regulation and open potential new avenues to exploit ferroptosis in cancer therapy.
OTUD4 promotes the progression of glioblastoma by deubiquitinating CDK1 and activating MAPK signaling pathway
Authors: Ci Mingxin , Zhao Gaichao , Li Chongyang , Liu Ruochen , Hu Xiaosong , Pan Jun , Shen Yang , Zhang Guanghui , Li Yongsen , Zhang Li , Liang Ping , Cui Hongjuan 
Published: March 2024

AbstractGlioblastoma, IDH-Wild type (GBM, CNS WHO Grade 4) is a highly heterogeneous and aggressive primary malignant brain tumor with high morbidity, high mortality, and poor patient prognosis. The global burden of GBM is increasing notably due to limited treatment options, drug delivery problems, and the lack of characteristic molecular targets. OTU deubiquitinase 4 (OTUD4) is a potential predictive factor for several cancers such as breast cancer, liver cancer, and lung cancer. However, its function in GBM remains unknown. In this study, we found that high expression of OTUD4 is positively associated with poor prognosis in GBM patients. Moreover, we provided in vitro and in vivo evidence that OTUD4 promotes the proliferation and invasion of GBM cells. Mechanism studies showed that, on the one hand, OTUD4 directly interacts with cyclin-dependent kinase 1 (CDK1) and stabilizes CDK1 by removing its K11, K29, and K33-linked polyubiquitination. On the other hand, OTUD4 binds to fibroblast growth factor receptor 1 (FGFR1) and reduces FGFR1’s K6 and K27-linked polyubiquitination, thereby indirectly stabilizing CDK1, ultimately influencing the activation of the downstream MAPK signaling pathway. Collectively, our results revealed that OTUD4 promotes GBM progression via OTUD4-CDK1-MAPK axis, and may be a prospective therapeutic target for GBM treatment.
Anharmonic strong-coupling effects at the origin of the charge density wave in CsV3Sb5
Authors: He Ge , Peis Leander , Cuddy Emma Frances , Zhao Zhen , Li Dong , Zhang Yuhang , Stumberger Romona , Moritz Brian , Yang Haitao , Gao Hongjun , Devereaux Thomas Peter , Hackl Rudi 
Published: March 2024

AbstractThe formation of charge density waves is a long-standing open problem, particularly in dimensions higher than one. Various observations in the vanadium antimonides discovered recently further underpin this notion. Here, we study the Kagome metal CsV3Sb5 using polarized inelastic light scattering and density functional theory calculations. We observe a significant gap anisotropy with $$2{\Delta }_{\max }/{k}_{{{{{{{{\rm{B}}}}}}}}}{T}_{{{{{{{{\rm{CDW}}}}}}}}}\, \approx \, 20$$
2

Δ

max

/

k

B

T

CDW

≈

20
, far beyond the prediction of mean-field theory. The analysis of the A1g and E2g phonons, including those emerging below TCDW, indicates strong phonon-phonon coupling, presumably mediated by a strong electron-phonon interaction. Similarly, the asymmetric Fano-type lineshape of the A1g amplitude mode suggests strong electron-phonon coupling below TCDW. The large electronic gap, the enhanced anharmonic phonon-phonon coupling, and the Fano shape of the amplitude mode combined are more supportive of a strong-coupling phonon-driven charge density wave transition than of a Fermi surface instability or an exotic mechanism in CsV3Sb5.
Magmatism controls global oceanic transform fault topography
Authors: Tian Xiaochuan , Behn Mark D. , Ito Garrett , Schierjott Jana C. , Kaus Boris J. P. , Popov Anton A. 
Published: March 2024

AbstractOceanic transform faults play an essential role in plate tectonics. Yet to date, there is no unifying explanation for the global trend in broad-scale transform fault topography, ranging from deep valleys to shallow topographic highs. Using three-dimensional numerical models, we find that spreading-rate dependent magmatism within the transform domain exerts a first-order control on the observed spectrum of transform fault depths. Low-rate magmatism results in deep transform valleys caused by transform-parallel tectonic stretching; intermediate-rate magmatism fully accommodates far-field stretching, but strike-slip motion induces across-transform tension, producing transform strength dependent shallow valleys; high-rate magmatism produces elevated transform zones due to local compression. Our models also address the observation that fracture zones are consistently shallower than their adjacent transform fault zones. These results suggest that plate motion change is not a necessary condition for reproducing oceanic transform topography and that oceanic transform faults are not simple conservative strike-slip plate boundaries.
Sequence-dependent material properties of biomolecular condensates and their relation to dilute phase conformations
Authors: Sundaravadivelu Devarajan Dinesh , Wang Jiahui , Szała-Mendyk Beata , Rekhi Shiv , Nikoubashman Arash , Kim Young C. , Mittal Jeetain 
Published: March 2024

AbstractMaterial properties of phase-separated biomolecular condensates, enriched with disordered proteins, dictate many cellular functions. Contrary to the progress made in understanding the sequence-dependent phase separation of proteins, little is known about the sequence determinants of condensate material properties. Using the hydropathy scale and Martini models, we computationally decipher these relationships for charge-rich disordered protein condensates. Our computations yield dynamical, rheological, and interfacial properties of condensates that are quantitatively comparable with experimentally characterized condensates. Interestingly, we find that the material properties of model and natural proteins respond similarly to charge segregation, despite different sequence compositions. Molecular interactions within the condensates closely resemble those within the single-chain ensembles. Consequently, the material properties strongly correlate with molecular contact dynamics and single-chain structural properties. We demonstrate the potential to harness the sequence characteristics of disordered proteins for predicting and engineering the material properties of functional condensates, with insights from the dilute phase properties.
Distributed feature representations of natural stimuli across parallel retinal pathways
Authors: Hsiang Jen-Chun , Shen Ning , Soto Florentina , Kerschensteiner Daniel 
Published: March 2024

AbstractHow sensory systems extract salient features from natural environments and organize them across neural pathways is unclear. Combining single-cell and population two-photon calcium imaging in mice, we discover that retinal ON bipolar cells (second-order neurons of the visual system) are divided into two blocks of four types. The two blocks distribute temporal and spatial information encoding, respectively. ON bipolar cell axons co-stratify within each block, but separate laminarly between them (upper block: diverse temporal, uniform spatial tuning; lower block: diverse spatial, uniform temporal tuning). ON bipolar cells extract temporal and spatial features similarly from artificial and naturalistic stimuli. In addition, they differ in sensitivity to coherent motion in naturalistic movies. Motion information is distributed across ON bipolar cells in the upper and the lower blocks, multiplexed with temporal and spatial contrast, independent features of natural scenes. Comparing the responses of different boutons within the same arbor, we find that axons of all ON bipolar cell types function as computational units. Thus, our results provide insights into the visual feature extraction from naturalistic stimuli and reveal how structural and functional organization cooperate to generate parallel ON pathways for temporal and spatial information in the mammalian retina.
The corrosion behavior of low carbon steel (AISI 1010) influenced by grain size through microstructural mechanical
Authors: Alharbi Sayer Obaid , Ahmad Shakeel , Gul Taza , Ali Ishtiaq , Bariq Abdul 
Published: March 2024

AbstractLow-carbon steel (AISI 1010) is the predominant material used in industrial food processing equipment. Such equipment is vulnerable to the corrosive environment produced by various production stages. Different processes, such as sulphonation and carbonation, are used in the processing of sugar in the sugar industry, creating a corrosive atmosphere. The corrosion behavior of low carbon steel (AISI 1010) is strongly influenced by grain size variations, which in turn affect the microstructural mechanical properties of the material. The mechanical behavior and performance of metallic materials, including their corrosion resistance, is determined by grain size which is an important parameter for this phenomena. The impact of low-carbon steel (AISI 1010) microstructure on corrosion behavior is discussed in this work. Heat treatment produces two different types of microstructure from the same material, which are then analyzed. Scanning Electron Microscopy (SEM) and Energy Dispersive Spectroscopy (EDS) have both been used to study characteristics including morphology and content. By supplying an appropriate corrosive medium, the corrosion performance of several microstructures of low-carbon steel (AISI 1010) was assessed, and corrosion rates were calculated using weight-loss and electrochemical techniques. Results show that the creation of a protective coating with a higher charge transfer resistance is caused by the adsorption process. The variety in phases and grain sizes may contribute to the corrosion stability of different microstructures, and as a result, the corrosion rate lowers as average grain sizes are reduced. Employing the galvanic effect, pearlite increases the rate of ferrite corrosion. The study's findings support the notion that quenching low-carbon steel (AISI 1010) results in a finer grain structure and greater corrosion resistance.
Tissue-specific variations of piperine in ten populations of Piper longum L.: bioactivities and toxicological profile
Authors: Biswas Protha , Pandey Devendra Kumar , Shekhawat Mahipal S. , Dey Abhijit , Malik Tabarak 
Published: March 2024

AbstractP. longum L., one of the most significant species of the genus Piperaceae, is most frequently employed in Indian-Ayurvedic and other traditional medicinal-systems for treating a variety of illnesses. The alkaloid piperine, is the key phytoconstituent of the plant, primarily responsible for its’ pharmacological-impacts. The aim of the study is to analyse the intra-specific variation in piperine content among different chemotypes (PL1 to PL 30) and identify high piperine yielding chemotype (elite-chemotype) collected from 10 different geographical regions of West Bengal by validated HPTLC chromatography method. The study also focused on the pharmacological-screening to better understand the antioxidant activity of the methanol extracts of P. longum by DPPH and ABTS radical-scavenging activity and genotoxic activity by Allium cepa root tip assay. It was found that the P. longum fruit chemotypes contain high amount piperine (highest 16.362 mg/g in chemotype PL9) than the stem and leaf chemotypes. Both DPPH and ABTS antioxidant assays revealed that P. longum showed moderate radical-scavenging activity and the highest activity was found in PL9 (fruit) chemotype with IC50 values of 124.2 $$\pm 0.97$$

±
0.97

and 104 $$\pm 0.78$$

±
0.78

µg/ml respectively. The A. cepa root tip assay showed no such significant genotoxic-effect and change in mitotic-index. The quick, reproducible, and validated HPTLC approach offers a useful tool for determining quantitative variations of piperine among P. longum chemotypes from different geographical-regions and also according to the different tissues and choose elite genotypes with high piperine production for continued propagation and commercialization for the pharmaceutical sector. Additionally, the plant's in-vitro antioxidant property and lack of genotoxicity directly supports its’ widespread and long history of use as a medicinal and culinary plant.
The impact of toxic trolling comments on anti-vaccine YouTube videos
Authors: Miyazaki Kunihiro , Uchiba Takayuki , Kwak Haewoon , An Jisun , Sasahara Kazutoshi 
Published: March 2024

AbstractAnti-vaccine trolling on video-hosting websites hinders efforts to increase vaccination rates by using toxic language and threatening claims to intimidate people and promote vaccine hesitancy. However, there is a shortage of research investigating the effects of toxic messages on these platforms. This study focused on YouTube anti-vaccine videos and examined the relationship between toxicity and fear in the comment section of these videos. We discovered that highly liked toxic comments were associated with a significant level of fear in subsequent comments. Moreover, we found complex patterns of contagion between toxicity and fear in the comments. These findings suggest that initial troll comments can evoke negative emotions in viewers, potentially fueling vaccine hesitancy. Our research bears essential implications for managing public health messaging and online communities, particularly in moderating fear-mongering messages about vaccines on social media.
A tissue-silicone integrated simulator for right ventricular pulsatile circulation with severe functional tricuspid regurgitation
Authors: Takada Jumpei , Morimura Hayato , Hamada Kohei , Okamoto Yusei , Mineta Shiho , Tsuboko Yusuke , Hattori Kaoru , Iwasaki Kiyotaka 
Published: March 2024

AbstractThere is a great demand for development of a functional tricuspid regurgitation (FTR) model for accelerating development and preclinical study of tricuspid interventional repair devices. This study aimed to develop a severe FTR model by creating a tissue-silicone integrated right ventricular pulsatile circulatory simulator. The simulator incorporates the porcine tricuspid annulus, valve leaflets, chordae tendineae, papillary muscles, and right ventricular wall as one continuous piece of tissue, thereby preserving essential anatomical relationships of the tricuspid valve (TV) complex. We dilated the TV annulus with collagenolytic enzymes under applying stepwise dilation, and successfully achieved a severe FTR model with a regurgitant volume of 45 ± 9 mL/beat and a flow jet area of 15.8 ± 2.3 cm2 (n = 6). Compared to a normal model, the severe FTR model exhibited a larger annular circumference (133.1 ± 8.2 mm vs. 115.7 ± 5.5 mm; p = 0.009) and lower coaptation height (6.6 ± 1.0 mm vs. 17.7 ± 1.3 mm; p = 0.003). Following the De-Vega annular augmentation procedure to the severe FTR model, a significant reduction in regurgitant volume and flow jet area were observed. This severe FTR model may open new avenues for the development and evaluation of transcatheter TV devices.
Enhancement of sense of ownership using virtual and haptic feedback
Authors: Altukhaim Samirah , George Daniel , Nagaratnam Kiruba , Kondo Toshiyuki , Hayashi Yoshikatsu 
Published: March 2024

AbstractAccomplishing motor function requires multimodal information, such as visual and haptic feedback, which induces a sense of ownership (SoO) over one’s own body part. In this study, we developed a visual–haptic human machine interface that combines three different types of feedback (visual, haptic, and kinesthetic) in the context of passive hand-grasping motion and aimed to generate SoO over a virtual hand. We tested two conditions, both conditions the three set of feedback were synchronous, the first condition was in-phase, and the second condition was in antiphase. In both conditions, we utilized passive visual feedback (pre-recorded video of a real hand displayed), haptic feedback (balloon inflated and deflated), and kinesthetic feedback (finger movement following the balloon curvature). To quantify the SoO, the participants’ reaction time was measured in response to a sense of threat. We found that most participants had a shorter reaction time under anti-phase condition, indicating that synchronous anti-phase of the multimodal system was better than in-phase condition for inducing a SoO of the virtual hand. We conclude that stronger haptic feedback has a key role in the SoO in accordance with visual information. Because the virtual hand is closing and the high pressure from the balloon against the hand creates the sensation of grasping and closing the hand, it appeared as though the person was closing his/her hand at the perceptual level.
Elevated external temperature affects cell ultrastructure and heat shock proteins (HSPs) in Paramacrobiotus experimentalis Kaczmarek, Mioduchowska, Poprawa, & Roszkowska, 2020
Authors: Kayastha Pushpalata , Wieczorkiewicz Filip , Pujol Myriam , Robinson Alison , Michalak Marek , Kaczmarek Łukasz , Poprawa Izabela 
Published: March 2024

AbstractIncreasing temperature influences the habitats of various organisms, including microscopic invertebrates. To gain insight into temperature-dependent changes in tardigrades, we isolated storage cells exposed to various temperatures and conducted biochemical and ultrastructural analysis in active and tun-state Paramacrobiotus experimentalis Kaczmarek, Mioduchowska, Poprawa, & Roszkowska, 2020. The abundance of heat shock proteins (HSPs) and ultrastructure of the storage cells were examined at different temperatures (20 °C, 30 °C, 35 °C, 37 °C, 40 °C, and 42 °C) in storage cells isolated from active specimens of Pam. experimentalis. In the active animals, upon increase in external temperature, we observed an increase in the levels of HSPs (HSP27, HSP60, and HSP70). Furthermore, the number of ultrastructural changes in storage cells increased with increasing temperature. Cellular organelles, such as mitochondria and the rough endoplasmic reticulum, gradually degenerated. At 42 °C, cell death occurred by necrosis. Apart from the higher electron density of the karyoplasm and the accumulation of electron-dense material in some mitochondria (at 42 °C), almost no changes were observed in the ultrastructure of tun storage cells exposed to different temperatures. We concluded that desiccated (tun-state) are resistant to high temperatures, but not active tardigrades (survival rates of tuns after 24 h of rehydration: 93.3% at 20 °C, 60.0% at 35 °C, 33.3% at 37 °C, 33.3% at 40 °C, and 20.0% at 42 °C).
Fast reconstruction of EEG signal compression sensing based on deep learning
Authors: Du XiuLi , Liang KuanYang , Lv YaNa , Qiu ShaoMing 
Published: March 2024

AbstractWhen traditional EEG signals are collected based on the Nyquist theorem, long-time recordings of EEG signals will produce a large amount of data. At the same time, limited bandwidth, end-to-end delay, and memory space will bring great pressure on the effective transmission of data. The birth of compressed sensing alleviates this transmission pressure. However, using an iterative compressed sensing reconstruction algorithm for EEG signal reconstruction faces complex calculation problems and slow data processing speed, limiting the application of compressed sensing in EEG signal rapid monitoring systems. As such, this paper presents a non-iterative and fast algorithm for reconstructing EEG signals using compressed sensing and deep learning techniques. This algorithm uses the improved residual network model, extracts the feature information of the EEG signal by one-dimensional dilated convolution, directly learns the nonlinear mapping relationship between the measured value and the original signal, and can quickly and accurately reconstruct the EEG signal. The method proposed in this paper has been verified by simulation on the open BCI contest dataset. Overall, it is proved that the proposed method has higher reconstruction accuracy and faster reconstruction speed than the traditional CS reconstruction algorithm and the existing deep learning reconstruction algorithm. In addition, it can realize the rapid reconstruction of EEG signals.