bluuebunny/crossref_metadata_2025_split huggingface dataset:
The amphioxus (Branchiostoma floridae) genome contains a highly diversified set of G protein-coupled receptors
Authors: Nordström Karl JV , Fredriksson Robert , Schiöth Helgi B 
Published: January 2008

Abstract

Background
G protein-coupled receptors (GPCRs) are one of the largest families of genes in mammals. Branchiostoma floridae (amphioxus) is one of the species most closely related species to vertebrates.

Results
Mining and phylogenetic analysis of the amphioxus genome showed the presence of at least 664 distinct GPCRs distributed among all the main families of GPCRs; Glutamate (18), Rhodopsin (570), Adhesion (37), Frizzled (6) and Secretin (16). Surprisingly, the Adhesion GPCR repertoire in amphioxus includes receptors with many new domains not previously observed in this family. We found many Rhodopsin GPCRs from all main groups including many amine and peptide binding receptors and several previously uncharacterized expansions were also identified. This genome has however no genes coding for bitter taste receptors (TAS2), the sweet and umami (TAS1), pheromone (VR1 or VR2) or mammalian olfactory receptors.

Conclusion
The amphioxus genome is remarkably rich in various GPCR subtypes while the main GPCR groups known to sense exogenous substances (such as Taste 2, mammalian olfactory, nematode chemosensory, gustatory, vomeronasal and odorant receptors) in other bilateral species are absent.
Protein interactions in human genetic diseases
Authors: Schuster-Böckler Benjamin , Bateman Alex 
Published: January 2008

AbstractWe present a novel method that combines protein structure information with protein interaction data to identify residues that form part of an interaction interface. Our prediction method can retrieve interaction hotspots with an accuracy of 60% (at a 20% false positive rate). The method was applied to all mutations in the Online Mendelian Inheritance in Man (OMIM) database, predicting 1,428 mutations to be related to an interaction defect. Combining predicted and hand-curated sets, we discuss how mutations affect protein interactions in general.
Factors Predicting the Near-Final Height in Growth Hormone-Treated Children and Adolescents with Chronic Kidney Disease
Authors: Nissel Richard , Lindberg Anders , Mehls Otto , Haffner Dieter 
Published: January 2008

AbstractContext: GH therapy is an accepted measure to increase adult height in young prepubertal patients suffering from growth failure related to chronic kidney disease (CKD). The impact of GH therapy on final height (FH) in CKD patients of pubertal age is unclear.Objective: This study set out to analyze near-FH in a cohort of GH-treated CKD patients.Design, Settings, and Patients: Of 240 evaluable patients in the Pfizer International Growth Database (KIGS) with CKD, 39% were prepubertal and 61% were pubertal at baseline; 45% were on conservative treatment for CKD, 28% were on dialysis, and 27% were in the period after renal transplantation.Main Outcome Measures: Near-FH, relation to pubertal stage, and factors predictive of growth response were the main outcome measures.Results: Mean height sd scores increased continuously during GH treatment until near-FH by 1.2 and 1.6 in boys and girls, respectively. Mean near-FH differed significantly from prepubertal patients showing severely delayed puberty (−3.6), late pubertal patients (−2.9), early pubertal patients (−2.2), and prepubertal patients with normal onset of puberty (−2.0). The initial degree of stunting, degree of bone age retardation, duration of GH therapy, time spent on conservative treatment/dialysis, pubertal delay (&gt;2 sd), gender, and age at start of GH treatment were significant predictors of growth response to GH therapy, explaining between 33 and 61% of the overall variability.Conclusions: Long-term GH therapy of CKD patients in prepubertal and pubertal age results in an increased adult height, but response is diminished in patients on dialysis and/or with severely delayed puberty.
Watershed and land use–based sources of trace metals in urban storm water
Authors: Tiefenthaler Liesl L , Stein Eric D , Schiff Kenneth C 
Published: January 2008

Abstract
Trace metal contributions in urban storm water are of concern to environmental managers because of their potential impacts on ambient receiving waters. The mechanisms and processes that influence temporal and spatial patterns of trace metal loading in urban storm water, however, are not well understood. The goals of the present study were to quantify trace metal event mean concentration (EMC), flux, and mass loading associated with storm water runoff from representative land uses; to compare EMC, flux, and mass loading associated with storm water runoff from urban (developed) and nonurban (undeveloped) watersheds; and to investigate within-storm and within-season factors that affect trace metal concentration and flux. To achieve these goals, trace metal concentrations were measured in 315 samples over 11 storm events in five southern California, USA, watersheds representing eight different land use types during the 2000 through 2005 storm seasons. In addition, 377 runoff samples were collected from 12 mass emission sites (end of watershed) during 15 different storm events. Mean flux at land use sites ranged from 24 to 1,238, 0.1 to 1,272, and 6 to 33,189 g/km2 for total copper, total lead, and total zinc, respectively. Storm water runoff from industrial land use sites contained higher EMCs and generated greater flux of trace metals than other land use types. For all storms sampled, the highest metal concentrations occurred during the early phases of storm water runoff, with peak concentrations usually preceding peak flow. Early season storms produced significantly higher metal flux compared with late season storms at both mass emission and land use sites.
Dose-related effects following oral exposure of 2,4-dinitrotoluene on the western fence lizard, Sceloporus occidentalis
Authors: Suski Jamie G , Salice Christopher , Houpt John T , Bazar Matthew A , Talent Larry G 
Published: January 2008

Abstract
2,4-dintitrotoluene (2,4-DNT) is an explosive frequently found in the soil of military installations. Because reptiles can be common on these sites, ecological risk assessments for compounds such as 2,4-DNT could be improved with toxicity data specific to reptiles. Western fence lizards, Sceloporus occidentalis, were used to develop a laboratory toxicity model for reptiles. A hierarchical approach was used; acute to subchronic studies were conducted to provide toxicity data relevant to short- and long-term exposures. First, a modified median lethal dose (LD50) study was conducted on male and female lizards using a stage-wise probit model. The LD50 was 577 mg/kg for female and 380 mg/kg for male lizards. Subsequently, a subacute experiment was conducted to further assess 2,4-DNT toxicity to male lizards and to define exposure levels for a longer term, subchronic study. The subchronic study was conducted for 60 consecutive days; male lizards were exposed to 0, 9, 15, 25, 42, 70 mg/kg/d. Dose-dependent mortality was observed in the three highest dose groups (25, 42, and 70 mg/kg/d); all other animals survived the study duration. Benchmark dose model calculations based on mortality indicated a 5% effect level of 15.8 mg/kg/d. At study termination, a gross necropsy was performed, organ weights were taken, and blood was collected for clinical and hematological analysis. Body weight, kidney weight, food consumption, postdose observations, and blood chemistries all were found to be significantly different from controls at doses above 9 mg/kg/d. Also, preliminary results suggest behavioral observations, and reduced food consumption may be a sensitive indicator of toxicity. The present study indicates Sceloporus occidentalis is suitable for evaluating toxicity of compounds to reptilian species.
Reproductive toxicity of vinclozolin in the fathead minnow: Confirming an anti-androgenic mode of action
Authors: Martinović Dalma , Blake Lindsey S , Durhan Elizabeth J , Greene Katie J , Kahl Michael D , Jensen Kathleen M , Makynen Elizabeth A , Villeneuve Daniel L , Ankley Gerald T 
Published: January 2008

AbstractThe objective of the present study was to characterize responses of the reproductive endocrine system of the fathead minnow (Pimephales promelas) to the fungicide vinclozolin (VZ), using a 21-d reproduction assay, and a shorter-term (approximately two weeks) test in which fish were cotreated with the VZ (a putative anti-androgen) and the androgen 17β-trenbolone (TB). Effects on fecundity, gonadal histology, secondary sexual characteristics, reproductive hormones, and relative abundance of androgen receptor (AR) and 11 β-hydroxysteroid dehydrogenase (11 βHSD) mRNA transcripts were evaluated in one or both of these studies. Fecundity of VZ-exposed fish was decreased in a concentration-dependent manner in the 21-d test, culminating in complete reproductive failure at a concentration of 700 μg/L. Exposure to VZ decreased expression of male secondary sexual characteristics— an effect typical of anti-androgens. The finding that exposure of females to TB-induced expression of prominent, male-like tubercles, which could be effectively blocked with VZ, provides powerful evidence of the anti-androgenic activity of VZ in vivo. In the two experiments VZ produced several responses possibly indicative of compensation or adaptation of the fish to the anti-androgen, including increases in gonad weight, AR and 11 βHSD mRNA transcript abundance, and ex vivo gonadal production of testosterone and 11-ketotestosterone. Overall, our results demonstrate that the model anti-androgen VZ, which also is an environmental contaminant, impairs reproductive success of fathead minnows and elicits endocrine responses consistent with an anti-androgenic mode of action.
Use of pollution-induced community tolerance of the bacterial community to detect phenol toxicity in soil
Authors: Demoling Louise Aldén , Bååth Erland 
Published: January 2008

AbstractPollution-induced community tolerance (PICT) was used to study effects of phenol on soil bacteria. Phenol was added to an agricultural soil in a microcosm experiment. The effects were studied for up to four months. Bacterial growth rates were estimated with the leucine incorporation technique. This technique was also used as detection method for PICT. Changes in community structure were studied using the phospholipid fatty acid (PLFA) pattern. Increased phenol PICT of the bacterial community was found at phenol concentrations above 1 μmol/g wet weight soil. Direct inhibiting effect on bacterial growth rates 1 d after adding phenol was correlated to PICT. Phenol toxicity was reflected by changes in the structure of the bacterial community, although PICT appeared more sensitive than the PLFA method. In soil amended with 1 to 10 μmol phenol/g soil, bacterial growth recovered within one week. In the soil amended with the highest phenol concentration (30 μmol/g soil), bacterial growth rate recovered from total inhibition after 27 d, eventually reaching values six times higher than in the control. However, PICT did not change during the four months the experiment was performed. The specificity of PICT was also studied by examining cotolerance to 2-chlorophenol, 2,4-dichlorophenol, 2,3,6-trichlorophenol, Cu, and Zn. Adding phenol induced cotolerance of the bacterial community to the other phenols, although always at a lover level than to phenol. No cotolerance was found to metals in phenol-polluted soil. We conclude that the PICT concept is a valuable tool in determining phenol toxicity to bacterial communities, especially in situations where bacterial growth has recovered. Cotolerance between different phenols can, however, make interpretations of PICT more complicated.
A screening method for toxicity identification evaluation on an industrial effluent using Chelex®-100 resin and chelators for specific metals
Authors: Onikura Norio , Kishi Katsuyuki , Nakamura Akiko , Takeuchi Shinichi 
Published: January 2008

AbstractToxicity of an industrial effluent was characterized using a toxicity identification method established at our research institute. Toxicity was evaluated using the Ceriodaphnia dubia survival test. The industrial effluent chosen in the present study had toxic effects on C. dubia before treatment. The effluent was first filtered to remove suspended solids (F-treatment). Activated charcoal was then added to the effluent to adsorb organic substances (AC-treatment), followed by treatment of the supernatant with Chelex®-100 resin to remove di- and trivalent cations, including transition metals (C100-treatment). The effluent exhibited atoxic effect on C. dubia even after the AC-treatment, but it was no longer toxic after the C100-treatment, indicating that the effluent contained cations that affect C. dubia survival. To further identify the metals responsible for the toxicity, benzoin-α-oxime or dimethylglyoxime was added to the effluent to chelate specific cations. The toxicity of the effluent was eliminated by addition of dimethylglyoxime but not significantly so by addition of benzoin-α-oxime, suggesting that the toxicants in the effluent strongly formed complexes with dimethylglyoxime. These results combined with those of metal analysis strongly suggest that nickel might be the noxious agent. The toxicity identification method described in this paper is effective for the identification of metal toxicants in industrial effluents. The method using insoluble chelating resins and chelators for specific metals would serve as a useful addition to the standard toxicity identification evaluation procedure.
Congener-specific characterization and sources of polychlorinated dibenzo-p-dioxins, dibenzofurans and dioxin-like polychlorinated biphenyls in marine sediments from industrialized bays of Korea
Authors: Moon Hyo-Bang , Choi Hee-Gu , Lee Pil-Yong , Ok Gon 
Published: January 2008

AbstractPolychlorinated dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs), and dioxin-like polychlorinated biphenyls (DLPCBs) were determined in 122 coastal sediments from heavily industrialized areas in Korea. Toxic equivalent (TEQ) concentrations of PCDD and PCDF (PCDD/F) and DLPCB ranged from 0.44 to 38.5 pg/g dry weight and from 0.01 to 38.4 pg/g dry weight, respectively. Overall PCDD/F and DLPCB concentrations were elevated in estuarine and inner bay locations close to industrial complexes, indicating that these contaminants derived from local discharges. Concentrations of PCDD/F measured in the present study were comparable to those in industrialized areas of other countries. Nonparametric multidimensional scaling ordination and congener-specific characterization showed that combustion processes occurring in industrial complexes, including the steel industry, are the major source of PCDD/Fs in Korean coastal waters. There were no significant correlations among PCDD/Fs, DLPCBs, and total organic carbon; however, there was moderate correlation between PCDD/Fs and DLPCBs in some coastal bays, suggesting that these chemicals have similar sources and movements in these locations.
Dose-dependent enantiomeric enrichment of 2,2′,3,3′,6,6′-hexachlorobiphenyl in female mice
Authors: Kania-Korwel Izabela , Hornbuckle Keri C , Robertson Larry W , Lehmler Hans-Joachim 
Published: January 2008

AbstractNineteen of the 209 possible polychlorinated biphenyl (PCB) congeners are chiral and stable to racemization at ambient temperature. Chiral PCB congeners are important components of technical and environmental PCB mixtures, and some are highly toxic. Both environmental and laboratory studies have shown that these chiral PCB congeners undergo enantiomeric enrichment in many species; however, the processes and factors influencing the extent of this enantiomeric enrichment are poorly understood. We hypothesized that the exposure levels are an important factor affecting the extent of enantiomeric enrichment. To test this hypothesis, we investigated the levels and enantiomeric fractions of (±)-PCB 136 in selected tissues, feces, and urine of female C57Bl/6 mice 3 d after oral administration of 2.5, 10, or 50 mg/kg body weight of (±)-PCB 136. The PCB 136 tissue levels typically increased with increasing dose. The extent of the enrichment of (+)-PCB 136 in tissues and feces, however, decreased with increasing dose, an observation that suggests a saturation of the disposition process responsible for the enantiomeric enrichment. Overall, the present study demonstrates that in addition to species, exposure source, exposure frequency, and other factors, levels of PCB exposure are an important determinant of the enantiomeric enrichment of PCBs in mice and, most likely, other species.
Why Dissection Videos Should Not Replace Cadaver Prosections in the Gross Veterinary Anatomy Curriculum: Results from a Comparative Study
Authors: Theoret Christine Laura , Carmel Éric-Norman , Bernier Sonia 
Published: January 2008

The goal of our study was to evaluate the impact of a tool intended to eliminate large-animal cadavers from the anatomy laboratory, in view of their prohibitive cost and the logistic difficulties they pose. We sought to determine whether a commented video of the bovine abdominal cavity could effectively replace a prosection of this region. The hypothesis was that students receiving video instruction would achieve lower scores on a post-instructional exam than those benefiting from a commented cadaver prosection. A commented video of the bovine abdominal cavity was compared to a prosection covering identical material. Seventy-five first-year students, having received no prior instruction on the region of interest, were divided into two groups of equivalent knowledge: group A received prosection instruction (N = 38) and group B, video instruction (N = 37). Following instruction, students completed a test on a cadaver, requiring that they correctly match 15 labeled structures with a list of 40 possible answers. Statistical analysis consisted of a repeated-measures linear model with group (A vs. B) as a between-subject factor and time (pre- vs post-test) as a within-subject factor, with significance at p ≤ 0.05. Students in group A achieved mean scores of 9.21 ± 0.31, while those in group B scored 7.65 ± 0.31. Although both groups significantly improved following instruction, there was a statistically significant difference in the post-instruction scores between groups A and B (p = 0.0007), in favor of the prosection group. The major comment in favor of cadaver prosection pertained to the sensory experience; in favor of video instruction, students stressed accessibility to the pedagogical material for autonomous learning and revision as well as superior viewing compared to the setup adopted for prosections. In conclusion, while our data suggest that cadaver prosections are superior to video demonstrations, it is apparent that students can learn bovine abdominal anatomy by both methods. Future investigations on the subject of alternative teaching methods are warranted.
Teaching Basic Medical Sciences at a Distance: Strategies for Effective Teaching and Learning in Internet-Based Courses
Authors: Ertmer Peggy A , Nour Abdelfattah Y.M 
Published: January 2008

In recent years, the Internet has become an effective and accessible delivery mechanism for distance education. In 2003, 81% of all institutions of higher education offered at least one fully online or hybrid course. By 2005, the proportion of institutions that listed online education as important to their long-term goals had increased by 8%. This growth in available online courses and their increased convenience and flexibility have stimulated dramatic increases in enrollment in online programs, including the Veterinary Technology Distance Learning Program (VT-DLP) at Purdue University. Regardless of the obvious benefits, distance learning (DL) can be frustrating for the learners if course developers are unable to merge their knowledge about the learners, the process of instructional design, and the appropriate uses of technology and interactivity options into effective course designs. This article describes strategies that we have used to increase students’ learning of physiology content in an online environment. While some of these are similar, if not identical, to strategies that might be used in a face-to-face (f2f) environment (e.g., case studies, videos, concept maps), additional strategies (e.g., animations, virtual microscopy) are needed to replace or supplement what might normally occur in a f2f course. We describe how we have addressed students’ need for instructional interaction, specifically in the context of two foundational physiology courses that occur early in the VT-DLP. Although the teaching and learning strategies we have used have led to increasingly high levels of interaction, there is an ongoing need to evaluate these strategies to determine their impact on students’ learning of physiology content, their development of problem-solving skills, and their retention of information.
Urban domestic gardens (XII): The richness and composition of the flora in five UK cities
Authors: Loram Alison , Thompson Ken , Warren Philip H. , Gaston Kevin J. 
Published: January 2008

AbstractQuestion:What floras are typically associated with domestic gardens in cities?Location:The urban areas of the cities of Belfast, Cardiff, Edinburgh, Leicester and Oxford, UK.Methods:The composition and diversity of plant species in 267 urban domestic gardens in the five cities was recorded by complete census and quadrat sampling.Results:The entire garden flora consisted of 1056 species, of which 30% were native and 70% alien. 34% of the 50 most frequently recorded species in gardens were native, a number of them being weeds. Although plant species richness in individual gardens varied with garden area, the above breakdowns held true when the cities were considered individually. The only exception was Belfast where, overall, plant species richness was slightly lower than in any of the other cities. Comparing quadrat samples, species richness was found to be greater in the garden habitats of each of the cities than in a number of other habitats, with species accumulation curves showing no sign of reaching saturation at 120 quadrats. This is due to the high proportion of alien species found in gardens, and in particular those surviving at low densities as a result of human intervention.Conclusion:There was surprisingly little difference in plant species richness, diversity or composition between the cities, despite the variation in geographical and climatic factors. This suggests that human factors such as plant availability, garden management and social/economic status of individual householders had an overriding influence.