bluuebunny/crossref_metadata_2025_split huggingface dataset:
Lyophilized cell-free supernatants of the oral probiotics Streptococcus salivarius M18 and Streptococcus salivarius K12 show promises for milk safety
Authors: Karaçam Sevinç , Tunçer Sinem 
Published: April 2024

Abstract
The functional food ingredients market has been growing due to the preferences for healthier, nutritional, environment-friendly, and convenience foods. Here, we evaluated the antimicrobial potential of the lyophilized cell-free supernatants of the two most promising oral probiotic strains Streptococcus salivarius M18 and S. salivarius K12 on Pseudomonas aeruginosa to be applied for safety purposes in the milk. We showed that the lyophilized culture supernatant of the strain M18 inhibited the pathogen growth in milk by about 75%, 70%, and 60% when incubated at 37°C, room temperature, and +4°C, respectively. The inhibition levels were about 50%, 30%, and 45% for the lyophilized K12 cell-free supernatant. Besides, the lyophilized culture supernatants of the oral probiotics, especially of S. salivarius M18, exhibited anti-cancer activities on colon cancer cells in vitro. Thus, the results of this manuscript suggest that the cell-free supernatants of the M18 and K12 strains are potential candidates, which merit more investigation for their applications, as biopreservatives in foods and beverages and as anti-cancer biotics for human health.
Isolation and characterization of the 2,5-pyridinedicarboxylic acid-degrading bacterium Agrobacterium sp. strain YJ-5
Authors: Jiang Yinhu , Zhang Yueyue , Wang Xiao , Zhang Fuyin , Xu Siqiong , Chen Qing , Hong Qing , He Jian , Qiu Jiguo 
Published: April 2024

Abstract
2,5-Pyridinedicarboxylic acid (2,5-PDA), a natural N-heterocyclic compound and a substitute for production in plastics, was widely distributed in industrial wastewater. However, the biodegradation of 2,5-PDA has been rarely reported. In this study, strain YJ-5, which could utilize 2,5-PDA as the sole carbon source for growth was isolated from pesticide-contaminated soil. Based on the comparative analysis of the 16S rRNA gene sequence, strain YJ-5 was identified as Agrobacterium sp. 2,5-PDA was completely degraded within 7 d and the optimal growth conditions of temperature, pH, and substrate concentration were 30°C, 7.0, and 0.6 mmol−1, respectively. A new intermediate 6-hydroxy-2,5-PDA was determined by UV/VIS spectroscopy and liquid chromatograph coupled time of flight mass spectrometry. When the electron acceptor (2,6-dichlorophenolindophenol) was employed, the 2,5-PDA could be converted by cell extracts of strain YJ-5 cells into 6-hydroxy-2,5-PDA. These results provided new insights for biodegradation on pyridine dicarboxylate.
Prevalence of antimicrobial-resistant bacteria in conventional vs. organic livestock farms in Egypt: a cross-sectional comparative study
Authors: ElSayed Nada , El-Attar Laila , Amine Amira 
Published: April 2024

Abstract
The silent pandemic of antimicrobial resistance (AR) has been on the rise for the past decades. It is essential to determine the burden of AR in animal farms that spreads leading to human exposure. A total of 100 samples including soil, litter, animal excreta, and wastewater were collected from seven conventional and one organic farm in Egypt. The prevalence of extended-spectrum β-lactamase-producing Escherichia coli (ESBL-producing E. coli), fluoroquinolone-resistant E. coli, fluoroquinolone-resistant Salmonella, and vancomycin-resistant enterococci (VRE) was determined in studied farms. Conventional farms had a higher prevalence of antimicrobial-resistant bacteria than the organic farm (73.81% vs. 18.75%, P &lt; .001). In conventional farms 21.43% of samples yielded mixed isolates; however, in the organic farm, only single isolates of ESBL-producing E. coli were detected. The most prevalent ESBL-production gene was blaTEM (82.14%), followed by blaCTX-M (48.22%), and blaSHV (19.64%), either alone or in combination with another gene. The most prevalent fluoroquinolone-resistance genes were qnrS (82.69%) and qnrB (42.30%), either alone or in combination with another gene(s). A total of five VRE isolates harbored vanA gene (83.33%), none carried vanB gene, and one isolate was negative for both genes. The studied conventional livestock farms had significantly higher rates of serious AR threats than the organic farm.
Evaluation of CHROMagar Acinetobacter and MacConkey media for the recovery of Acinetobacter baumannii from soil samples
Authors: Yusuf I , Skiebe E , Wilharm G 
Published: April 2024

Abstract
The opportunistic pathogen Acinetobacter baumannii occupies niches in human and veterinary clinics and other environments. This comparative study was designed to assess the recovery rate of Ac. baumannii from 20 soil samples collected in Germany (from which Ac. baumannii had been previously isolated) on selective CHROMagar Acinetobacter (CMA) and MacConkey Agar (MCA). Suspected Ac. baumannii were confirmed by detection and sequencing of blaOXA-51-like genes. Overall, the recovery rate of Ac. baumannii from both media was similar. Out of the 20 soil samples enriched in mineral salt medium (MM) plus 0.2% acetate for 5 h, Ac. baumannii was recovered from 12 (60%) on CMA and 11 (55%) on MCA, and from 14 (70%) with both selective media after enrichment for 24 h. Typical and distinct colonies of Ac. baumannii were more often observed on CMA with soil enriched in MM for 5 h, while on MCA distinct colonies were more obvious after 24 h. In five soil samples (25%), strains harbouring different OXA-51-like variants were recovered on MCA. Late lactose fermentation (48 h) was observed on MCA. The study suggests that no single growth medium would efficiently recover Ac. baumannii from all soil samples.
Modulation of quorum sensing activity by copper sulfate, potassium dichromate, and cadmium chloride in biosensor strains
Authors: Torres Mariela Analía , Palacios Eva Aida Rebeca , Lacosegliaz Mariano José , de Figueroa Lucía Inés Castellanos , Nieto-Peñalver Carlos Gabriel 
Published: April 2024

Abstract
Beyond their biological roles, metals have a strong impact on the environment. It has been reported that metals are also inhibitory of Quorum Sensing (QS) mechanisms, ones of the best characterized signaling systems in bacteria and fungi. We analyzed the effect of CuSO4, CdCl2, and K2Cr2O7, on QS systems sharing or differing in the bacterial host or the QS signal. The results in this study show that CuSO4 can not only be inhibitory, but also stimulatory of QS activity: at 0.2 mM increased six fold the activity in Chromobacterium subtsugae CV026. This behavior is related to the concentration of the metal and the particular QS system: E. coli MT102 (pJBA132) was no affected, but CuSO4 decreased the QS activity of Pseudomonas putida F117 (pKR-C12) to half its control values. K2Cr2O7 increased four and three folds the QS activities of E. coli MT102 (pJBA132) and P. putida F117 (pAS-C8), respectively, but without effect when combined with CuSO4 or CdCl2. CdCl2 only showed a positive effect in CV026 when combined with CuSO4. Results suggest that factors related with the culture conditions impact on the influence of the metals, and reinforce the importance of the environment in the modulation of QS activity.
Evaluating iQ-CheckTM real-time PCR to detect Salmonella from poultry environmental samples in Fraser Valley, British Columbia, Canada
Authors: Kenmuir Ethan , Knowles Daniel , Hughes Giselle , Battle Jaime , Ghosh Kazal 
Published: April 2024

Abstract
Salmonella is a ubiquitous pathogen that accounts for foodborne and livestock illnesses worldwide. Robust surveillance programs must be implemented to maintain human and animal health and limit economic losses. The poultry industry in particular demands the implementation of rapid Salmonella detection methods that will facilitate the timely availability of results in a manner allowing actions to be taken for the associated poultry products. One such method, the iQ-CheckTM real-time PCR, has significantly reduced turnaround times compared to conventional culture methods. In this study, a total 733 poultry environmental samples was received from farms in the Fraser Valley of British Columbia, Canada and the real-time PCR method was assessed for its ability to detect Salmonella in comparison to the currently used culture protocol. The iQ-Check real-time PCR method was effective at accurately screening out the majority of negative samples, and demonstrated a very strong correlation with the culture method. This was especially true when selective enrichment was performed before PCR, with sensitivity, specificity, and accuracy values reaching 100.0%, 98.5%, and 98.9%, respectively. These results demonstrate that rapid detection methods could be effectively introduced into current Salmonella surveillance workflows dealing with environmental poultry samples to reduce turnaround times and minimize economic impacts on producers.
Evaluation of the health properties of lactobacilli isolated from an Iranian traditional dairy product
Authors: Shemshad Nina , Nasiraie Leila Roozbeh , Heravi Reza Majidzadeh 
Published: April 2024

Abstract
The different lactobacillus strains isolated from dairy resources may have unique functional properties on human health. Thus, the present study aimed to evaluate the health properties of the lactobacilli isolated from a traditional dairy product in vitro. A total of seven isolated lactobacilli abilities were evaluated for environmental pH reduction, antibacterial activity, cholesterol reduction, and antioxidant activity. Based on the results, the highest decrease in the environment pH was observed in Lactobacillusfermentum B166 with 57%. The antipathogen activity test showed the best results for inhibiting Salmonella typhimurium and Pseudomonas aeruginosa to be obtained by Lact. fermentum 10–18 and Lact. brevis SKB1021 strains, respectively. However, Lact. plantarum H1 and Lact. plantarum PS7319 represented the maximum activity in preventing Escherichia coli; also, Lact. fermentum APBSMLB166 inhibited Staphylococcus aureus more than other strains. Additionally, Lact. crustorum B481 and fermentum 10–18 strains significantly led to a higher reduction in the medium cholesterol than the other strains. The results of antioxidant tests demonstrated that Lact. brevis SKB1021 and Lact. fermentum B166 inhabited radical substrate significantly more than the other lactobacilli. Therefore, four lactobacilli isolated from a traditional dairy product improved some safety indexes positively; thus, they are suggested to be used in manufacturing probiotic supplements.
Simple template-based reverse transcription-recombinase polymerase amplification assay for routine diagnosis of citrus tristeza virus
Authors: Sharma Susheel Kumar , Pathaw Neeta , Wangkhem Baby , Jackson Kabrabam Suraj , Devi Konjengbam Sarda , Roy Subhra Saikat , Singh Akoijam Ratankumar , Singh Raghuveer , Banerjee Amrita , Kumar Sudhir , Ningombam Arati , Firake Dnyaneshwar Madhukar , Singh Thokchom Surjit 
Published: April 2024

Abstract
This study reports a simple template-based reverse transcription-polymerase amplification assay (ST-RT-RPA) for detection of citrus tristeza virus (CTV) from crude plant extract lysed in NaOH:EDTA (1:1) without the need of tedious RNA isolation. The developed assay showed versatility in its usage as amplification can be performed at wide temperature range (14°C to 42°C) and incubation time (4 to 32 min), although the best conditions were 38°C for 30 min. The developed ST-RT-RPA assay could detect the CTV up to 10−8 dilution of crude plant extract of NaOH:EDTA and up to 0.01 fg µl−1 of RNA of CTV-infected plant tissues and 0.001 ag µl−1 of plasmid DNA containing viral insert, thus exhibiting sufficient sensitivity. ST-RT-RPA assay showed high specificity without any cross-reaction with other citrus pathogens (Indian citrus ringspot virus, citrus yellow mosaic virus, citrus yellow vein clearing virus, and Candidatus Liberibacter asiaticus) and was more sensitive in detection of CTV infection in field samples as compared to standard reverse transcription-polymerase chain reaction (RT-PCR) with later showing false negative in 7.92% of samples tested after 1 week of sampling. The developed ST-RT-RPA assay used minimally processed crude plant extract as template, tolerant to sample degradation in transit and storage, while it can be easily performed at wide temperatures and could be adopted in resource-poor setup.
Gradually supply of isoamyl alcohol increases the isoamyl acetate production in solid-state fermentation
Authors: Sainz-Mellado Diana C , Méndez-Hernández Jazmín E , López-Miranda Javier , Páez-Lerma Jesús B , Aguilar Cristobal N , Soto-Cruz Nicolas O 
Published: April 2024

Abstract
Nowadays, isoamyl acetate production is carried out by chemical synthesis with a recent interest in developing biological producing processes, mainly based on microorganisms in submerged fermentation. This work assayed producing isoamyl acetate through solid-state fermentation (SSF), feeding the precursor in the gas phase. Polyurethane foam functioned as the inert support to contain 20 ml of a solution of molasses (10% w/v, pH 5.0). The yeast Pichia fermentans was inoculated at 3 × 107 cells per gram of initial dry weight. The airstream to supply oxygen also served to supply the precursor. Slow supply was obtained using an isoamyl alcohol solution of 5 g l−1 in the bubbling columns and an air stream of 50 ml min−1. For fast supply, fermentations were aerated using 10 g l−1 and 100 ml min−1 for isoamyl alcohol solution and air stream, respectively. It demonstrated the feasibility of isoamyl acetate production in SSF. Moreover, the slow supply of the precursor increased isoamyl acetate production up to 390 mg l−1, which is 12.5 times higher than that obtained without precursor (32 mg l−1). On the other hand, fast supply caused an evident inhibition of the growth and production capacity of the yeast.
Zinc solubilizing Bacillus sp (SS9) and Enterobacter sp (SS7) promote mung bean (Vigna radiata L.) growth, nutrient uptake and physiological profiles
Authors: Shreya Desai , Amaresan Natarajan , Supriya Naga Rathna 
Published: April 2024

Abstract
Zinc (Zn) is a crucial micronutrient required for optimum plant growth. Zn-solubilizing bacteria (ZSB) are potential alternatives for Zn supplementation and convert applied inorganic Zn to available forms. In this study, ZSB were isolated from the root nodules of wild legumes. From a set of 17 bacteria, the isolates SS9 and SS7 were found to be efficient in tolerating 1 g (w/v) Zn. The isolates were identified as Bacillus sp (SS9, MW642183) and Enterobacter sp (SS7, MW624528) based on morphology and 16S rRNA gene sequencing. The screening of PGP bacterial properties revealed that both isolates possessed production of indole acetic acid (50.9 and 70.8 µgmL–1), siderophore (40.2% and 28.0%), and solubilization of phosphate and potassium. The pot study experiment in the presence and absence of Zn revealed that the Bacillus sp and Enterobacter sp inoculated plants showed enhanced mung bean plant growth (45.0% to 61.0% increment in shoot length and 26.9 to 30.9% in root length) and biomass compared to the control. The isolates also enhanced photosynthetic pigments such as total chlorophyll (1.5 to 6.0-fold) and carotenoids (0.5 to 3.0-fold) and 1–2-fold increase in Zn, phosphorous (P), and nitrogen (N) uptake compared to the Zn-stressed control. The present results indicated that the inoculation of Bacillus sp (SS9) and Enterobacter sp(SS7) reduced the toxicity of Zn and, in turn, enhanced the plant growth and mobilization of Zn, N, and P to the plant parts.
Molecular characteristics and genetic analysis of the genes related to carbapenemase, efflux pump, and outer membrane proteins in carbapenem-resistant Klebsiella pneumoniae
Authors: Onishi Reo , Shigemura Katsumi , Osawa Kayo , Yang Young-Min , Maeda Koki , Tanimoto Hiroshi , Kado Mitsuki , Fang Shiuh-Bin , Fujisawa Masato 
Published: April 2024

Abstract
Carbapenem-resistant Klebsiella pneumoniae (CRKP) is a life-threatening pathogen that has not been fully investigated on a molecular basis. Therefore, the molecular mechanisms of carbapenem resistance in CRKP collected from medical institutions in Hyogo Prefecture has been analyzed. Antimicrobial susceptibilities and the presence of carbapenemase along with epidemiological analyzes using multilocus sequence typing (MLST) have been investigated. The relative expression of efflux pump genes and mutations of ompK35 and ompK36, encoding the outer membrane porin, were also assessed for their relationship with carbapenem resistance. Most of the collected 22 CRKP isolates were non-susceptible to imipenem (68.2%), meropenem (90.9%), and ertapenem (81.8%), but all 22 strains were susceptible to colistin. Twelve strains (54.5%) were detected for carbapenemase genes such as blaIMP-6. Sequence type 37 was detected by MLST in 10 strains (45.5%). Non-carbapenemase-producing strains had high resistance rates for three carbapenems, and the main cause of resistance was ompK35 mutation. In conclusion, the main cause of resistance was imipenemase metallo-β-lactamase (IMP-6) production in carbapenemase-producing strains, and ompK35 mutation in non-carbapenemase-producing strains. Susceptibility to carbapenem did not differ in CRKP regardless of carbapenemase production, except for imipenem susceptibility. This result contributes to a more insightful understanding of the mechanisms of CRKP in Japan.
A nanobiocatalytic system based on the self-assembly of ferrous phosphate with a high regioselectivity nitrile hydratase
Authors: Wang Li , Huang Jiao , Cui Baocheng , Mu Er , Liang Changhai 
Published: April 2024

Abstract
Our previous study identified a novel nitrile hydratase (NHase) with remarkable biotransformation activity toward adipamide during the production of 5-cyanovaleramide (5-CVAM), an important intermediate of herbicide and chemical raw material. Nevertheless, free NHase will face harsh conditions if they are applied directly in industrial processes. In this study, we, therefore, prepared Fe3(PO4)2 hybrid nanoflowers for NHase immobilization based on the protein–inorganic hybrid self-assembly by establishing a novel and facile method. The results showed that the NHase@Fe3(PO4)2 nanoflowers had significantly enhanced tolerance to the temperature ranging from 40°C to 60°C when compared with free NHase. The catalytic activity of NHase@Fe3(PO4)2 nanoflowers remained high in extreme pH environments such as weak acid (pH 5) and strong alkali (pH 10) environments. In addition, the storage stability and reusability of encapsulated NHase were also superior to that of free NHase. NHase@Fe3(PO4)2 nanoflowers had a notable feature of high substrate tolerance. We found NHase@Fe3(PO4)2 nanoflowers still had 65% activity as the adiponitrile concentration increased up to 200 mmol L−1, whereas free NHase almost lost their catalytic activity when the adiponitrile concentration was just 100 mmol L−1. All of these results clearly demonstrated that ferrous phosphate nanocrystals might offer a novel strategy for 5-CVAM production with nanobiocatalytic systems.
Maize treatment with yeast cells induces resistance against Fusarium rot
Authors: Colombini Fernanda de Sousa , Ceccato-Antonini Sandra Regina , Rosa-Magri Márcia Maria 
Published: April 2024

Abstract
Maize is one of the most cultivated species and requires agrochOPemicals for nutrition and pathogen control. Fusarium verticillioides is responsible for damaging plants and stored grains. Plants naturally exposed to stresses have defense mechanisms that are triggered by chemical or biological agents, known as induced systemic resistance. In this study, the yeast Torulaspora globosa (strain CCA6S01) was evaluated as an immune response promoter in maize against F. verticillioides. The treatments started 4 days after maize emergence and consisted of control (saline solution), acetylsalicylic acid (ASA, 100 mg/L), yeast cells (1 × 105 cells/mL), or yeast metabolites (cell-free filtrates). After running the treatments, the plants were inoculated with 1 mL of a F. verticillioides suspension at a concentration of 1 × 106  spores/mL. The application of yeast cells provided similar results to ASA treatment, a known inducer of plant resistance. Yeast cells provided maize plants with fewer rot symptoms and higher activities of enzymes related to plant resistance. Thus, we concluded that T. globosa (strain CCA6S01) might be used in agriculture practice as a plant protection agent. It can help to decrease the application of fungicides in the field and maintain plant productivity under stress.
Enhanced production and immobilization of phytase from Aspergillus oryzae: a safe and ideal food supplement for improving nutrition
Authors: Pragya  , Sharma Krishna Kant , Kumar Sandeep , Manisha  , Singh Davender , Kumar Vijay , Singh Bijender 
Published: April 2024

Abstract
Microbial phytases are potentially excellent candidates for eliminating anti-nutrient i.e. phytic acid, due to hydrolysis of phospho-monoester linkages present in the phytic acid. An average 2.29-fold increase in phytase production was obtained after statistical optimization in solid-state fermentation. Aspergillus oryzae SBS50 phytase was immobilized on a Ca-alginate matrix with an effectiveness of 53%. Immobilized-phytase retained &gt; 50% activity after recycling for five cycles and also displayed more stability in the presence of organic solvents, metal ions, and detergents as compared to free enzyme. Values of Km and Vmax of immobilized phytase were recorded as 0.66 mM and 666.6 nmol/sec, respectively. Immobilized phytase efficiently hydrolyzed the phytate contents in wheat and pearl millet flours, exhibiting &gt; 70% catalytic activity even after three cycles. Phytase supplementation resulted in the improved nutritional quality of these flours. Furthermore, the safety assessment of the treated and untreated samples reveals the absence of any aflatoxin in the phytase produced by the mould. The results revealed the improved stability of phytase after immobilization and as a safe and significant additive for application in the food industry.