bluuebunny/crossref_metadata_2025_split huggingface dataset:
Inverting Geodetic Strain Rates for Slip Deficit Rate in Complex Deforming Zones: An Application to the New Zealand Plate Boundary
Authors: Johnson Kaj M. , Wallace Laura M. , Maurer Jeremy , Hamling Ian , Williams Charles , Rollins Chris , Gerstenberger Matt , Van Dissen Russ 
Published: March 2024

AbstractThe potential for future earthquakes on faults is often inferred from inversions of geodetically derived surface velocities for locking on faults using kinematic models such as block models. This can be challenging in complex deforming zones with many closely spaced faults or where deformation is not readily described with block motions. Furthermore, surface strain rates are more directly related to coupling on faults than surface velocities. We present a methodology for estimating slip deficit rate directly from strain rate and apply it to New Zealand for the purpose of incorporating geodetic data in the 2022 revision of the New Zealand National Seismic Hazard Model. The strain rate inversions imply slightly higher slip deficit rates than the preferred geologic slip rates on sections of the major strike‐slip systems including the Alpine Fault, the Marlborough Fault System and the northern part of the North Island Fault System. Slip deficit rates are significantly lower than even the lowest geologic estimates on some strike‐slip faults in the southern North Island Fault System near Wellington. Over the entire plate boundary, geodetic slip deficit rates are systematically higher than geologic slip rates for faults slipping less than one mm/yr but lower on average for faults with slip rates between about 5 and 25 mm/yr. We show that 70%–80% of the total strain rate field can be attributed to elastic strain due to fault coupling. The remaining 20%–30% shows systematic spatial patterns of strain rate style that is often consistent with local geologic style of faulting.
Exploring van der Waals materials with high anisotropy: geometrical and optical approaches
Authors: Slavich Aleksandr S. , Ermolaev Georgy A. , Tatmyshevskiy Mikhail K. , Toksumakov Adilet N. , Matveeva Olga G. , Grudinin Dmitriy V. , Voronin Kirill V. , Mazitov Arslan , Kravtsov Konstantin V. , Syuy Alexander V. , Tsymbarenko Dmitry M. , Mironov Mikhail S. , Novikov Sergey M. , Kruglov Ivan , Ghazaryan Davit A. , Vyshnevyy Andrey A. , Arsenin Aleksey V. , Volkov Valentyn S. , Novoselov Kostya S. 
Published: March 2024

AbstractThe emergence of van der Waals (vdW) materials resulted in the discovery of their high optical, mechanical, and electronic anisotropic properties, immediately enabling countless novel phenomena and applications. Such success inspired an intensive search for the highest possible anisotropic properties among vdW materials. Furthermore, the identification of the most promising among the huge family of vdW materials is a challenging quest requiring innovative approaches. Here, we suggest an easy-to-use method for such a survey based on the crystallographic geometrical perspective of vdW materials followed by their optical characterization. Using our approach, we found As2S3 as a highly anisotropic vdW material. It demonstrates high in-plane optical anisotropy that is ~20% larger than for rutile and over two times as large as calcite, high refractive index, and transparency in the visible range, overcoming the century-long record set by rutile. Given these benefits, As2S3 opens a pathway towards next-generation nanophotonics as demonstrated by an ultrathin true zero-order quarter-wave plate that combines classical and the Fabry–Pérot optical phase accumulations. Hence, our approach provides an effective and easy-to-use method to find vdW materials with the utmost anisotropic properties.
Enhanced fear memory after social defeat in mice is dependent on interleukin-1 receptor signaling in glutamatergic neurons
Authors: Goodman Ethan J. , Biltz Rebecca G. , Packer Jonathan M. , DiSabato Damon J. , Swanson Samuel P. , Oliver Braeden , Quan Ning , Sheridan John F. , Godbout Jonathan P. 
Published: March 2024

AbstractChronic stress is associated with increased anxiety, cognitive deficits, and post-traumatic stress disorder. Repeated social defeat (RSD) in mice causes long-term stress-sensitization associated with increased microglia activation, monocyte accumulation, and enhanced interleukin (IL)-1 signaling in endothelia and neurons. With stress-sensitization, mice have amplified neuronal, immune, and behavioral responses to acute stress 24 days later. This is clinically relevant as it shares key aspects with post-traumatic stress disorder. The mechanisms underlying stress-sensitization are unclear, but enhanced fear memory may be critical. The purpose of this study was to determine the influence of microglia and IL-1R1 signaling in neurons in the development of sensitization and increased fear memory after RSD. Here, RSD accelerated fear acquisition, delayed fear extinction, and increased cued-based freezing at 0.5 day. The enhancement in contextual fear memory after RSD persisted 24 days later. Next, microglia were depleted with a CSF1R antagonist prior to RSD and several parameters were assessed. Microglia depletion blocked monocyte recruitment to the brain. Nonetheless, neuronal reactivity (pCREB) and IL-1β RNA expression in the hippocampus and enhanced fear memory after RSD were microglial-independent. Because IL-1β RNA was prominent in the hippocampus after RSD even with microglia depletion, IL-1R1 mediated signaling in glutamatergic neurons was assessed using neuronal Vglut2+/IL-1R1−/− mice. RSD-induced neuronal reactivity (pCREB) in the hippocampus and enhancement in fear memory were dependent on neuronal IL-1R1 signaling. Furthermore, single-nuclei RNA sequencing (snRNAseq) showed that RSD influenced transcription in specific hippocampal neurons (DG neurons, CA2/3, CA1 neurons) associated with glutamate signaling, inflammation and synaptic plasticity, which were neuronal IL-1R1-dependent. Furthermore, snRNAseq data provided evidence that RSD increased CREB, BDNF, and calcium signaling in DG neurons in an IL-1R1-dependent manner. Collectively, increased IL-1R1-mediated signaling (monocytes/microglia independent) in glutamatergic neurons after RSD enhanced neuronal reactivity and fear memory.
Does minimed 780GTM insulin pump system affect energy and nutrient intake?: long-term follow-up study
Authors: Atik-Altinok Yasemin , Mansuroglu Yelda , Demir Gunay , Balki Hanife Gul , Ozen Samim , Darcan Sukran , Goksen Damla 
Published: March 2024

Abstract
Objective
We evaluate the energy and nutrient intake of children, adolescents, and young adults with type 1 diabetes (T1D) who started to use automated insulin delivery (AID) systems before the transition and during follow-up for 6 months in a real-world setting.

Research design and methods
Twenty-nine people with T1D (PwD) who started to use MiniMed 780GTM participated in the study. Participants’ 3-day food diaries and glycemic outcomes were analyzed at baseline and after (the 3rd and 6th month) switching to an advanced hybrid closed-loop system (a-HCL).

Results
Mean carbohydrate, protein, and fat intake (energy %) at baseline were 49.1 ± 4.5, 17.8 ± 2.3, and 33.0 ± 3.9, respectively, and there were no statistically significant differences during the follow-up period. However, low fiber (<14 g/1000 kcal) and high saturated fat (>10 energy %) intake in PwD, both baseline and follow-up period. The median auto-correction bolus ratio was 14.0 (9.5)% at auto mode after 14 days, 18.0 (11.0)% at the 3rd month, and 19.0 (7.5)% at the 6th month (p < 0.05). A negative correlation was present between auto-correction boluses with TIR in both the 3rd (r:-0.747, p < 0.01) and 6th month (r:-0.395, p < 0.05). A negative correlation was present between auto-correction boluses with TIR in both the 3rd (r:-0.747, p < 0.01) and 6th month (r:-0.395, p < 0.05).

Conclusions
a-HCLS systems offer better glycemic control. Using the Minimed 780 GTM insulin pump system didn’t change the energy and nutrient intake of PwD. This real-world follow-up study suggests that children, adolescents, and young adults with T1D consume saturated fat above and fiber intake lower than recommendations independent of the use of a-HCLS.

Clinical trials registration number
NCT05666596.
Effect of inorganic material surface chemistry on structures and fracture behaviours of epoxy resin
Authors: Miyata Tomohiro , Sato Yohei K. , Kawagoe Yoshiaki , Shirasu Keiichi , Wang Hsiao-Fang , Kumagai Akemi , Kinoshita Sora , Mizukami Masashi , Yoshida Kaname , Huang Hsin-Hui , Okabe Tomonaga , Hagita Katsumi , Mizoguchi Teruyasu , Jinnai Hiroshi 
Published: March 2024

AbstractThe mechanisms underlying the influence of the surface chemistry of inorganic materials on polymer structures and fracture behaviours near adhesive interfaces are not fully understood. This study demonstrates the first clear and direct evidence that molecular surface segregation and cross-linking of epoxy resin are driven by intermolecular forces at the inorganic surfaces alone, which can be linked directly to adhesive failure mechanisms. We prepare adhesive interfaces between epoxy resin and silicon substrates with varying surface chemistries (OH and H terminations) with a smoothness below 1 nm, which have different adhesive strengths by ~13 %. The epoxy resins within sub-nanometre distance from the surfaces with different chemistries exhibit distinct amine-to-epoxy ratios, cross-linked network structures, and adhesion energies. The OH- and H-terminated interfaces exhibit cohesive failure and interfacial delamination, respectively. The substrate surface chemistry impacts the cross-linked structures of the epoxy resins within several nanometres of the interfaces and the adsorption structures of molecules at the interfaces, which result in different fracture behaviours and adhesive strengths.
Fully inkjet-printed Ag2Se flexible thermoelectric devices for sustainable power generation
Authors: Liu Yan , Zhang Qihao , Huang Aibin , Zhang Keyi , Wan Shun , Chen Hongyi , Fu Yuntian , Zuo Wusheng , Wang Yongzhe , Cao Xun , Wang Lianjun , Lemmer Uli , Jiang Wan 
Published: March 2024

AbstractFlexible thermoelectric devices show great promise as sustainable power units for the exponentially increasing self-powered wearable electronics and ultra-widely distributed wireless sensor networks. While exciting proof-of-concept demonstrations have been reported, their large-scale implementation is impeded by unsatisfactory device performance and costly device fabrication techniques. Here, we develop Ag2Se-based thermoelectric films and flexible devices via inkjet printing. Large-area patterned arrays with microscale resolution are obtained in a dimensionally controlled manner by manipulating ink formulations and tuning printing parameters. Printed Ag2Se-based films exhibit (00 l)-textured feature, and an exceptional power factor (1097 μWm−1K−2 at 377 K) is obtained by engineering the film composition and microstructure. Benefiting from high-resolution device integration, fully inkjet-printed Ag2Se-based flexible devices achieve a record-high normalized power (2 µWK−2cm−2) and superior flexibility. Diverse application scenarios are offered by inkjet-printed devices, such as continuous power generation by harvesting thermal energy from the environment or human bodies. Our strategy demonstrates the potential to revolutionize the design and manufacture of multi-scale and complex flexible thermoelectric devices while reducing costs, enabling them to be integrated into emerging electronic systems as sustainable power sources.
Stem Leydig cells support macrophage immunological homeostasis through mitochondrial transfer in mice
Authors: Chi Ani , Yang Bicheng , Dai Hao , Li Xinyu , Mo Jiahui , Gao Yong , Chen Zhihong , Feng Xin , Ma Menghui , Li Yanqing , Yang Chao , Liu Jie , Liu Hanchao , Wang Zhenqing , Gao Feng , Liao Yan , Shi Xuetao , Deng Chunhua , Zhang Min 
Published: March 2024

AbstractAs testicular mesenchymal stromal cells, stem Leydig cells (SLCs) show great promise in the treatment of male hypogonadism. The therapeutic functions of mesenchymal stromal cells are largely determined by their reciprocal regulation by immune responses. However, the immunoregulatory properties of SLCs remain unclear. Here, we observe that SLCs transplantation restore male fertility and testosterone production in an ischemia‒reperfusion injury mouse model. SLCs prevent inflammatory cascades through mitochondrial transfer to macrophages. Reactive oxygen species (ROS) released from activated macrophages inducing mitochondrial transfer from SLCs to macrophages in a transient receptor potential cation channel subfamily member 7 (TRPM7)-mediated manner. Notably, knockdown of TRPM7 in transplanted SLCs compromised therapeutic outcomes in both testicular ischemia‒reperfusion and testicular aging mouse models. These findings reveal a new mechanism of SLCs transplantation that may contribute to preserve testis function in male patients with hypogonadism related to immune disorders.
Lunar rock investigation and tri-aspect characterization of lunar farside regolith by a digital twin
Authors: Ding Liang , Zhou Ruyi , Yu Tianyi , Yang Huaiguang , He Ximing , Gao Haibo , Wang Juntao , Yuan Ye , Wang Jia , Wang Zhengyin , Qi Huanan , Li Jian , Feng Wenhao , Li Xin , Liu Chuankai , Han Shaojin , Zeng Xiaojia , Zhao Yu-Yan Sara , Liu Guangjun , Wan Wenhui , Zhang Yuedong , Wang Saijin , Li Lichun , Deng Zongquan , Liu Jianzhong , Hu Guolin , Zhao Rui , Zhang Kuan 
Published: March 2024

AbstractYutu-2 rover conducted an exciting expedition on the 41st lunar day to investigate a fin-shaped rock at Longji site (45.44°S, 177.56°E) by extending its locomotion margin on perilous peaks. The varied locomotion encountered, especially multi-form wheel slippage, during the journey to the target rock, established unique conditions for a fin-grained lunar regolith analysis regarding bearing, shear and lateral properties based on terramechanics. Here, we show a tri-aspect characterization of lunar regolith and infer the rock’s origin using a digital twin. We estimate internal friction angle within 21.5°−42.0° and associated cohesion of 520-3154 Pa in the Chang’E-4 operational site. These findings suggest shear characteristics similar to Apollo 12 mission samples but notably higher cohesion compared to regolith investigated on most nearside lunar missions. We estimate external friction angle in lateral properties to be within 8.3°−16.5°, which fills the gaps of the lateral property estimation of the lunar farside regolith and serves as a foundational parameter for subsequent engineering verifications. Our in-situ spectral investigations of the target rock unveil its composition of iron/magnesium-rich low-calcium pyroxene, linking it to the Zhinyu crater (45.34°S, 176.15°E) ejecta. Our results indicate that the combination of in-situ measurements with robotics technology in planetary exploration reveal the possibility of additional source regions contributing to the local materials at the Chang’E-4 site, implying a more complicated geological history in the vicinity.
Deep model predictive control of gene expression in thousands of single cells
Authors: Lugagne Jean-Baptiste , Blassick Caroline M. , Dunlop Mary J. 
Published: March 2024

AbstractGene expression is inherently dynamic, due to complex regulation and stochastic biochemical events. However, the effects of these dynamics on cell phenotypes can be difficult to determine. Researchers have historically been limited to passive observations of natural dynamics, which can preclude studies of elusive and noisy cellular events where large amounts of data are required to reveal statistically significant effects. Here, using recent advances in the fields of machine learning and control theory, we train a deep neural network to accurately predict the response of an optogenetic system in Escherichia coli cells. We then use the network in a deep model predictive control framework to impose arbitrary and cell-specific gene expression dynamics on thousands of single cells in real time, applying the framework to generate complex time-varying patterns. We also showcase the framework’s ability to link expression patterns to dynamic functional outcomes by controlling expression of the tetA antibiotic resistance gene. This study highlights how deep learning-enabled feedback control can be used to tailor distributions of gene expression dynamics with high accuracy and throughput without expert knowledge of the biological system.
Structural basis for self-discrimination by neoantigen-specific TCRs
Authors: Finnigan John P. , Newman Jenna H. , Patskovsky Yury , Patskovska Larysa , Ishizuka Andrew S. , Lynn Geoffrey M. , Seder Robert A. , Krogsgaard Michelle , Bhardwaj Nina 
Published: March 2024

AbstractT cell receptors (TCR) are pivotal in mediating tumour cell cytolysis via recognition of mutation-derived tumour neoantigens (neoAgs) presented by major histocompatibility class-I (MHC-I). Understanding the factors governing the emergence of neoAg from somatic mutations is a major focus of current research. However, the structural and cellular determinants controlling TCR recognition of neoAgs remain poorly understood. This study describes the multi-level analysis of a model neoAg from the B16F10 murine melanoma, H2-Db/Hsf2 p.K72N68-76, as well as its cognate TCR 47BE7. Through cellular, molecular and structural studies we demonstrate that the p.K72N mutation enhances H2-Db binding, thereby improving cell surface presentation and stabilizing the TCR 47BE7 epitope. Furthermore, TCR 47BE7 exhibited high functional avidity and selectivity, attributable to a broad, stringent, binding interface enabling recognition of native B16F10 despite low antigen density. Our findings provide insight into the generation of anchor-residue modified neoAg, and emphasize the value of molecular and structural investigations of neoAg in diverse MHC-I contexts for advancing the understanding of neoAg immunogenicity.
Activity-dependent compartmentalization of dendritic mitochondria morphology through local regulation of fusion-fission balance in neurons in vivo
Authors: Virga Daniel M. , Hamilton Stevie , Osei Bertha , Morgan Abigail , Kneis Parker , Zamponi Emiliano , Park Natalie J. , Hewitt Victoria L. , Zhang David , Gonzalez Kevin C. , Russell Fiona M. , Grahame Hardie D. , Prudent Julien , Bloss Erik , Losonczy Attila , Polleux Franck , Lewis Tommy L. 
Published: March 2024

AbstractNeuronal mitochondria play important roles beyond ATP generation, including Ca2+ uptake, and therefore have instructive roles in synaptic function and neuronal response properties. Mitochondrial morphology differs significantly between the axon and dendrites of a given neuronal subtype, but in CA1 pyramidal neurons (PNs) of the hippocampus, mitochondria within the dendritic arbor also display a remarkable degree of subcellular, layer-specific compartmentalization. In the dendrites of these neurons, mitochondria morphology ranges from highly fused and elongated in the apical tuft, to more fragmented in the apical oblique and basal dendritic compartments, and thus occupy a smaller fraction of dendritic volume than in the apical tuft. However, the molecular mechanisms underlying this striking degree of subcellular compartmentalization of mitochondria morphology are unknown, precluding the assessment of its impact on neuronal function. Here, we demonstrate that this compartment-specific morphology of dendritic mitochondria requires activity-dependent, Ca2+ and Camkk2-dependent activation of AMPK and its ability to phosphorylate two direct effectors: the pro-fission Drp1 receptor Mff and the recently identified anti-fusion, Opa1-inhibiting protein, Mtfr1l. Our study uncovers a signaling pathway underlying the subcellular compartmentalization of mitochondrial morphology in dendrites of neurons in vivo through spatially precise and activity-dependent regulation of mitochondria fission/fusion balance.
Direct observation of altermagnetic band splitting in CrSb thin films
Authors: Reimers Sonka , Odenbreit Lukas , Šmejkal Libor , Strocov Vladimir N. , Constantinou Procopios , Hellenes Anna B. , Jaeschke Ubiergo Rodrigo , Campos Warlley H. , Bharadwaj Venkata K. , Chakraborty Atasi , Denneulin Thibaud , Shi Wen , Dunin-Borkowski Rafal E. , Das Suvadip , Kläui Mathias , Sinova Jairo , Jourdan Martin 
Published: March 2024

AbstractAltermagnetism represents an emergent collinear magnetic phase with compensated order and an unconventional alternating even-parity wave spin order in the non-relativistic band structure. We investigate directly this unconventional band splitting near the Fermi energy through spin-integrated soft X-ray angular resolved photoemission spectroscopy. The experimentally obtained angle-dependent photoemission intensity, acquired from epitaxial thin films of the predicted altermagnet CrSb, demonstrates robust agreement with the corresponding band structure calculations. In particular, we observe the distinctive splitting of an electronic band on a low-symmetry path in the Brilliouin zone that connects two points featuring symmetry-induced degeneracy. The measured large magnitude of the spin splitting of approximately 0.6 eV and the position of the band just below the Fermi energy underscores the significance of altermagnets for spintronics based on robust broken time reversal symmetry responses arising from exchange energy scales, akin to ferromagnets, while remaining insensitive to external magnetic fields and possessing THz dynamics, akin to antiferromagnets.
The defensome of complex bacterial communities
Authors: Beavogui Angelina , Lacroix Auriane , Wiart Nicolas , Poulain Julie , Delmont Tom O. , Paoli Lucas , Wincker Patrick , Oliveira Pedro H. 
Published: March 2024

AbstractBacteria have developed various defense mechanisms to avoid infection and killing in response to the fast evolution and turnover of viruses and other genetic parasites. Such pan-immune system (defensome) encompasses a growing number of defense lines that include well-studied innate and adaptive systems such as restriction-modification, CRISPR-Cas and abortive infection, but also newly found ones whose mechanisms are still poorly understood. While the abundance and distribution of defense systems is well-known in complete and culturable genomes, there is a void in our understanding of their diversity and richness in complex microbial communities. Here we performed a large-scale in-depth analysis of the defensomes of 7759 high-quality bacterial population genomes reconstructed from soil, marine, and human gut environments. We observed a wide variation in the frequency and nature of the defensome among large phyla, which correlated with lifestyle, genome size, habitat, and geographic background. The defensome’s genetic mobility, its clustering in defense islands, and genetic variability was found to be system-specific and shaped by the bacterial environment. Hence, our results provide a detailed picture of the multiple immune barriers present in environmentally distinct bacterial communities and set the stage for subsequent identification of novel and ingenious strategies of diversification among uncultivated microbes.