bluuebunny/crossref_metadata_2025_split huggingface dataset:
Perturbing highly conserved spatial relationships in the regulatory domain that controls inducible cat translation
Authors: Gu Zhiping , Lovett Paul S. 
Published: October 2006

SummaryChloramphenicol activates translation of cat‐86 mRNA by stalling a ribosome in the leader of individual transcripts. Stalling triggers two sequential events: the destabilization of a region of secondary structure that sequesters the cat ribosome‐binding site (RBS‐C), and the initiation of cat translation. The site of drug‐dependent ribosome stalling is dictated by the leader sequence, crb; crb causes a ribosome to stall with its aminoacyl site at leader codon 6. We demonstrate that induction requires the maintenance of a precise spatial relationship between crb and sequences within the left inverted repeat of the secondary structure. Therefore, destabilization of the secondary structure during chloramphenicol induction may result from the interaction of a stalled ribosome with a specific sequence in the secondary structure rather than from non‐specific masking of RNA sequences, cat‐86 regulation also depends on the distance that separates crb from RBS‐C. This interval of 33 nucleotides was incrementally increased and decreased by mutations within a loop in the secondary structure. Shortening the distance between crb and RBS‐C by three nucleotides reduced induction by half and a deletion of nine nucleotides abolished induction. Insertion mutations were without effect on induced expression but elevated basal expression. The results indicate that when the A site of a ribosome occupies leader codon 6 the secondary structure is destabilized and there is no interference with entry of a second ribosome at RBS‐C. The data further demonstrate that when the A site of a ribosome in the leader is within 30 nucleotides of RBS‐C, cat expression decreases. This decrease probably results from competition of the leader ribosome with the ribosome initiating cat translation. Our observations demonstrate that in wild‐type cat‐86 the distances between crb and the secondary structure, and between crb and RBS‐C provide the precise spacing necessary to achieve three interdependent effects: the destabilization of the RNA secondary structure by a ribosome stalled at crb; a lack of competition between a ribosome stalled at crb and the initiating ribosome; and maintenance of a low, but measurable, basal level of cat expression. The spatial relationships identified as necessary for the regulation of cat‐86 are conserved in the regulatory regions for five other inducible cat genes.
Cloning and genetic characterization of a Hellcobacter pylori flagellin gene
Authors: Leying H. , Suerbaum S. , Geis G. , Haas R. 
Published: October 2006

Summary Helicobacter pylori produces polar sheathed flagella, which are believed to be essential for the bacterial colonization of the human gastric mucosa. Here we report on the cloning and genetic characterization of a H. pylori gene encoding the subunit of the flagellar filament, the flagellin. Screening of a genomic library of H. pylori with an oligonucleotide probe derived from the W‐terminal amino acid sequence of purified flagellin resulted in a recombinant plasmid clone carrying the flagellin‐encoding gene flaA on a 9.3 kb Bglll fragment. The nucleotide sequence of flaA revealed an open reading frame of 1530 nucleotides, encoding a protein with a predicted molecular mass of 53.2 kDa, which is similar in size with the purified flagellin protein in SDS‐potyacrylamide gel electrophoresis. Sequence alignment of H. pylori flagellin (FlaA) with other bacterial flagellins demonstrates a high degree of similarity in the amino‐terminal and carboxy‐terminal regions, including those of the closely related genus Campylobacter (56% overall identity with Campylobacter coli flaA), but little homology in the central domain. Southern hybridizations of chromosomal DNA with flaA‐specific probes did not reveal the presence of additional homologous flagellin genes in H. pylori. Sequence analysis of the flaA flanking regions and mapping of the flaA mRNA start site by a primer extension experiment indicated that transcription of the gene is under the control of a σ28‐specific promoter sequence in H. pylori. The region upstream of the flaA promoter is subject to local DNA modification, resulting in the masking of two out of three closely linked HindIII restriction sites in the chromosome of strain 898–1. Escherichia coli strains harbouring the recombinant plasmid did not produce full‐length flagellin and data obtained with FlaA fusion proteins using an E. coli plasmid expression system suggest that a distinct nucleotide sequence in the gene interferes with productive translation of this protein in E. coli.
Sequence alterations affecting F plasmid transfer gene expression: a conjugation system dependent on transcription by the RNA polymerase of phage T7
Authors: Maneewannakul Kesmanee , Maneewannakul Sumit , Ippen‐Ihler Karin 
Published: October 2006

SummaryWe constructed derivatives of the Escherichia coli conjugative plasmid F that carry altered sequences in place of the major transfer operon promoter, PY Replacement of PY with a promoter‐deficient sequence resulted in a transfer‐deficient, F‐pilus‐specific phage‐resistant plasmid (pOX38‐tra 701) that could still express TraJ and TraT; TraY, F‐pilin, TraD, and Tral were not detectable on Western blots. On a second plasmid (pOX38‐tra 715) we replaced PY with a phage T7 late promoter sequence. In hosts carrying a lacUV5‐promoter‐regulated T7 RNA polymerase gene, all transfer‐associated properties of pOX38‐tra 715 could be regulated with IPTG. After induction, pOX38‐tra715 transferred at the wild‐type frequency, expressed normal numbers of F‐pili and conferred sensitivity to pilus‐specific phages. No adverse effects on cell viability were apparent, and additional mutations could easily be crossed onto pOX38‐tra 715. A traJ deletion (pOX36‐tra716) had no effect on the IPTG‐induced transfer phenotype. Insertion of cam into trbC, resulted in a mutant (pOX38‐tra715trbC33) which, after induction, exhibited the same phenotype associated with other trbC mutants; it could also be complemented by expression of trbC in trans. With pOX38‐tra715 or its derivatives, we were able to label specifically the products of tra genes located throughout the long tra operon, by using rifampicin. This feature can be used to investigate transfer protein interactions and to follow changes in these proteins that are associated with conjugal mating events.
The chromosomal integration site for the Streptomyces plasmid SLP1 is a functional tRNATyr gene essential for cell viability
Authors: Vögtli Martin , Cohen Stanley N. 
Published: October 2006

SummaryThe genetic element SLP1 exists in nature as a single DNA segment integrated into the genome of Streptomyces coelicolor. Upon mating with Streptomyces lividans, a closely related species, SLP1 undergoes precise excision from its chromosomal site and is transferred into the recipient where it integrates chromosomally. Previous work has shown that integration and excision involve site‐specific recombination between a chromosomal site, attB, and a virtually identical sequence, attP, on SLP1. We demonstrate here by means of gene replacement that a tRNATvr sequence that overlaps part of the attB site of S. lividans is both biologically functional and essential for cell viability. The requirement for this tRNA gene has been used to stabilize the inheritance of a segrationally unstable plasmid in cells lacking a chromosomal attB site. The evolution of an essential DNA locus as an attachment site for a chromosomally integrating genetic element represents a novel mechanism of biological adaptation.
The gal locus from Haemophilus influenzae: cloning, sequencing and the use of gal mutants to study lipopolysaccharide
Authors: Maskell D.J. , Szabo M. J. , Deadman M. E. , Moxon E. R. 
Published: October 2006

SummaryThe gal locus from Haemophilus influenzae was cloned and sequenced. Four genes were identified by amino acid homology: galT, galK, galM an6 galR. The coding direction of galT, galK and galM is divergent from that of galR. There are non‐coding intergenic regions between gaIR and galT, galT and galK, and galK and galM. Deletion‐insertion mutations constructed in galK and galE, which is in Iic3, were moved into the H. influenzae chromosome generating each of the single mutants as well as the double gal mutant. Even when grown on complex media, the double mutant failed to react with an anti‐lipopolysac‐charide monoclonal antibody known to react with a digalactoside epitope. Both the galE single and the galEgalK double mutants were serum‐sensitive and relatively avirulent in infant rats, indicating a critical role for galactose metabolism, and providing evidence to support a central role for lipopolysaccharide, in H. influenzae virulence.
A 3′ transcriptional enhancer within the coding sequence of a yeast gene encoding the common subunit of two multi‐enzyme complexes
Authors: Zaman Z. , Brown A. J. P. , Dawes I. W. 
Published: October 2006

SummaryA well‐defined set of isogenic yeast strains has been constructed whereby each strain contains a different LPD::lacZ gene fusion integrated at the ura3 locus. These LPD::lacZ fusions differ in the amount of the LPD1 gene (encoding lipoamide dehydrogenase) that is fused to the lacZ reporter. Comparison of the β‐galactosidase activities of each strain during growth on glucose or ethanol revealed that some part of the LPD1 coding region between +13 and +700 is involved in activating gene expression in a carbon source‐dependent manner. This activation occurs at the mRNA level, and is not mediated by changes in mRNA stability. Therefore, the LPD1 gene appears to contain a transcriptional enhancer that lies 3′ to the transcriptional start site, and which responds to carbon source.
Postinfantile giant‐cell hepatitis associated with ulcerative colitis and autoimmune hepatitis
Authors: Anagnostopoulos George K , Margantinis George , Tsiakos Stavros , Kostopoulos Panagiotis , Grigoriadis Kyriakos , Arvanitidis Dimitrios 
Published: October 2006

AbstractPostinfantile giant cell hepatitis (PGCH) is rare. It is characterized by the presence of multinucleated giant cells in liver biopsy, and although it has been associated with several etiological agents, in many cases its etiology remains unclear. The case is presented herein of an adult woman with PGCH in the setting of ulcerative colitis and autoimmune hepatitis. The presence of autoimmune hepatitis in the patient is consistent and supports the autoimmune pathogenesis of PGCH in a subgroup of patients. Furthermore, this finding, along with others, suggests that PGCH may be included in the list of hepatic complications of inflammatory bowel disease.
Reviews
Authors: Lambert Kenneth 
Published: October 2006

Von franz, Marie‐louise, C. G. Jung: his myth in our time.Meltzer, D., Bremner, J., Hoxter, S., Weddell, D., Wittenberg, I. Explorations in autism—a psychoanalytic study.Singer, June. Androgyne: towards a new theory of sexuality. C. G. Jung letters Freeman, Thomas: Childhood psychopathology and adult psychosis.Van de Winckel, Erna.Les symboles et l'inconscient.
Book Reviews
Authors: Lambert Kenneth 
Published: October 2006

Fordham, Michael. Jungian psychotherapy: a study in analytical psychology.Moreno, M. Introduzione alla prassi della psicologia analiticaShuttle, Penelope and Redgrove, Peter. The wise wound: menstruation and everywomanHomans, Peter, Ed. Childhood and selfhood.Inglis, Brian. Natural and supernatural; a history of the paranormal.Sontag, Susan. Illness as metaphor.
Journal Reviews
Authors: Ledermann Rushi 
Published: October 2006

[Authors are asked to send offprints of articles in learned journals on subjects relevant to this section. Offprints of articles in other publications will not normally be reported here, likewise offprints of articles in books, since they may constitute part of a volume that can be made the subject matter of a review.]Allenby, A. I. (London). ‘Science and psychology’Bosanquet, Camilla (London). ‘Analytical psychotherapy’Dreifuss, G. (Haifa). ‘Artists in the creative process of Jungian analysis’Fierz, H. K. (Zürich). ‘Die Bedeutung des Traumes in der Analytichen Psychologie C. G. Jung.’Leutwiler, Arthur (Zürich). ‘Über den Umgang mit Suizidgefährdeten’Plaut, A. (London). Individuation: Ein Grundkonzept der Psychotherapie (Individuation): a basic concept of psychotherapy)Pouplier, Mechthild (Stuttgart). ‘Zur Problematik von Sieg und Niederlage’Pouplier, M. (Stuttgart). ‘Über die Einbeziehung von Partnern Partnerinnen in die Stationäre Psychotherapie’Zoya, L. (Milano). ‘Riflessioni sulla terapia analitica delle tossicomanie, con particolare riferimento all'alcoolismo’Zoya, L. (Milano). ‘Un caso di problematica etica inconscia’Zoya, L. (Milano). ‘La terapia analitica di fronte alia vecchaia’
Reviews
Authors: Peterson Corinna 
Published: October 2006

Chiron: a new review of Jungian analysisJacoby, Mario. The Analytic Encounter: Transference and Human Relationship.Westman, Heinz. The Structure of Biblical Myths. The Ontogenesis of the Psyche.Papadopoulos, R. Saayman, G. (eds.). Jung in Modern Perspective.Jensen, Ferne (Ed.). C. G. Jung, Emma Jung and Toni Wolff. A Collection of Remembrances.Lawrence, Marilyn. The Anorexic Experience.Spignesi, Angelyn. Starving Women. A Psychology of Anorexia Nervosa.
Reviews
Authors: Samuels Andrew 
Published: October 2006

Edinger, Edward P. Encounter with the Self: a Jungian Commentary on William Blake'sCovitz, Joel, Emotional Child Abuse: The Family Curse.Tuby, Molly. (Ed). In the Wake of JungMartin, Luther H., Goss, James (Eds). Essays on Jung and the Study of ReligionCoward, H. with Bocelli, J., Jordens, J., and Henderson, J. Jung and Eastern Thought.
Reviews
Authors: Samuels Andrew 
Published: October 2006

Edinger, Edward, F. The Bible and the Psyche: Individuation Symbolism in the Old Testament.Hillman, James. Anima: an Anatomy of a Personified Notion.Leonard, Linda Schierse. The Wounded Woman: Healing the Father‐Daughter Relationship.Spiegelman, Marvin, J., Miyuki, Mokusen. Buddhism and Jungian Psychology.Perera, Sylvia Brinton. The Scapegoat Complex.Franz, Marie‐Louise Von, On Dreams and Death.Benvenuto, Bice, Kennedy, Roger. The Works of Jacques Lacan: An Introduction.Symington, Neville. The Analytic Experience: Lectures from the Tavistock.
Journal Reviews
Authors: Perry Christopher 
Published: October 2006

Affield‐Niemeyer, P. (Berlin). ‘Laughter and its shadow: archetypal symbols and their history, exemplified by a discussion of the recognition of the Gestalt in the human face, in smiling, laughing, and the fear of being thought ridiculous’. Analytische PsychologicErlenmeyer, A. (Berlin). ‘Die Funktion des Religiösen und der Über–Ich–Begriff in C. G. Jungs Theoriebildung. Historische und klinische Aspekte (The function of religion and the concept of the super‐ego in the formation of C. G. Jung's theories. Historical and clinical aspects)’. Analytische PsychologicMcGlashan, A. R. (London). ‘Symbolization and human development: The use of symbols in religion from the perspective of analytical psychology’. Journal of Religious StudiesOdajnyk, V. Walter (New York). ‘Meditation and alchemy’. Psychological PerspectivesSamuels, A. (London). ‘Gender and the borderline’. Chiron.Samuels, A. (London). ‘On fathering daughters’. ObserverSamuels, A. (London). ‘Dimensioni simboliche dell'eros nella relazione transferale–controtransferale: impieghi clinici della metafora alchemica di Jung’ (Symbolic dimensions of Eros in transference and countertransference: some clinical uses of Jung's alchemical metaphor). AnalysisSpringer, A. (Berlin). ‘The return of the repressed in the mask of the victim’. Journal of PsychohistorySauer, G. (Berlin). ‘Lehrer traumen von Schule und Schulern (Teachers' dreams about school and pupils)’. Beiträge, Pädagogischer ArbeitUrban, E. (London). ‘Childhood and the child within: views of an analytical psychologist’. Journal of the British Association of PsychotherapistsVan Eenwyk, J. R. (Evanston) ‘Switching tracks in psychotherapy: parallel paradigms in psychology and religion’. Journal of Contemporary Psychotherapy
Book Reviews
Authors: Covington Coline , Jalbert Ronald 
Published: October 2006

Samuels, A. (Ed.) Psychopathology: Contemporary Jungian Perspectives.Sidoli, Mara. The Unfolding Self.Fabricius, Johannes. Alchemy: The Medieval Alchemists and their Royal Art.Aziz, Robert. C. G. Jung' Psychology of Religion and Synchronicity.
Journal Reviews
Authors: Diggle Sedwell 
Published: October 2006

Gad, Irene, (New York). ‘“Beauty and the Beast” and “The Wonderful Shpp”. The couple in fairy tales: when father's daughter meets mother's son.’ In Psyche's Stories, ed. M. Stein and L. Corbett.Hobdell, Roger. (London). ‘Individual and group therapy combined’. In The Practice of Group Atialysis, ed. J. Roberts and M. Pines.Samuels, A. (London). ‘Education and ecology: psychological reflections’.Samuels, A. (London). ‘Jung and anti‐Semitism’.Samuels, A. (London). ‘Le père et ses enfants’. Cahiers Jungiens de PsychartalyseSamuels, A. (London). ‘O espelho e o martelo: Psichologia profunda e transformaçao politica’ (The mirror and the hammer: depth psychology and political transformation)Samuels, A. (London). ‘Original morality in a depressed culture’. Psychoanalysis and Contemporary ThoughtSamuels, A. (London). ‘Parents as messengers’, British Journal of PsychotherapySamuels, A. (London). ‘Pluralism and training’. Journal of the British Association of PsychotherapistsUlanov, Ann Belford. (New York). ‘The objectivity of subjectivity: the feminist and spiritual strengths of psychoanalysis’. In Jung and Christianity in Dialogue, ed. R. Moore and D. MeekleUlanov, Ann Belford. (New York). ‘Scapegoating: the double cross’. In Lingering Shadows: Freud, Jung and Anti‐Semitism, ed. A. MaidenbaumUrban, E. (London). ‘The eye of the beholder: work with a ten‐year old deaf girl’. Journal of Child PsychotherapyVan Eenwyck, J. R. (Illinois). ‘The chaotic dynamics of everyday life’. The Quarterly Journal of the American Theosophical Society
Book Reviews
Authors: Covington Coline , Jalbert Ron 
Published: October 2006

Kerenyi, K. and Hillman, J. Oedipus Variations: Studies in Literature and PsychoanalysisChodorow, J. Dance Therapy and Depth Psychology: The Moving ImaginationLoomis, M. E. Dancing the Wheel of Psychological TypesGrinberg, L. The Goals of Psychoanalysis: Identification, Identity and Supervision
Journal Reviews
Authors: Diggle Sedwell 
Published: October 2006

Clarus, I. (Stuttgart, BRD). ‘Die Tränen, ihre äussere und innere Wirklichkeit’ (Tears, their outer and inner reality). Analytische PsychologicErlenmeyer, Arvid. (Berlin). ‘Jung und die Deutschen’. Analytische PsychologieHubback, Judith (London). ‘Eve’. In To Speak or Be Silent: The Paradox of Disobedience in the Lives of WomenJones, Peggy (London). ‘Avoiding the edge’. British Journal of PsychotherapyJust, Wilhelm (Austria). ‘Experiencing One‐ness: Unus Mundus‐Vir Unus’. In Unus Mundus: Kosmos und Sympathie; Beitrage zum Gedanken der Einheit von Mensch und KosmoOdajnyk, V. Walter. (New York). ‘Zazen: a psychological exploration’. Psychological PerspectivesSamuels, A. (London). ‘Countertransference and polities’. British Journal of PsychotherapySamuels, A. (London). ‘Educazione ed ecologia: riflessioni psicologiche’. L'immaginaleSamuels, A. (London). ‘Men under scrutiny’. Psychological PerspectivesSamuels, A. (London). ‘Nationale Psychologie, National Sozialismus und Analytische Psychologie’. Analytische PsychologieSamuels, A. (London). ‘Oltre il principio di compensazione: la modificazione dell'approccio di jung al sogno' (Beyond the principle of compensation: modifying Jung's approach to the dream). RiflessiSamuels, A. (London). ‘Person and psyche’. HarvestSamueis, A. (London). ‘The political clinic’, Psychological Perspectives
Book Reviews
Authors: Perry Christopher , Jalbert Ronald 
Published: October 2006

Grünbaum, Adolf. Validation in the Clinical Theory of Psychoanalysis: A Study in the Philosophy of PsychoanalysisHollis, James. The Middle Passage: From Misery to Meaning in MidlifeBertoia, Judi. Drawings from a Dying Child: Insights into Death from a Jungian PerspectiveHolt, David. The Psychology of Carl Jung: Essays in Application and Deconstruction
Book Reviews
Authors: Perry Christopher , Jalbert Ronald 
Published: October 2006

Meghnagi, David (ed.) Freud and JudaismSpiegelman, J. Marvin. Judaism and Jungian PsychologyMomigliano, Luciana Nissim and Robutti, Andreina. Shared Experience: The Psychoanalytical DialogueNemiroff, Robert A., Sugarman, Alan and Robbins, Alvin (eds). On Loving, Hating and Living Well: The Public Psychoanalytic Lectures of Ralph R. Greenson, M.DRosenfeld, David. The Psychotic: Aspects of the Personality
Journal Reviews
Authors: Meredith‐Owen William , Short Susanne 
Published: October 2006

Arden, Margaret. (London). ‘Freud and Jung’. Free AssociationsCarr, Coeli. (U.S.A.). ‘Selling the Feminine’. The San Francisco Jung Institute Library JournalDavies, Miranda. (London). ‘Heroic deeds, manic defence, and intrusive identification: some reflections on psychotherapy with a 16‐year old boy’. Journal of Child PsychotherapyFordham, Michael. (London). ‘The Jung‐Klein hybrid’. Free AssociationsGiegerich, Wolfgang. ‘Killings: psychology's Platonism and the missing link to reality’. SpringJacoby, Mario. (Zollikon, Switzerland). ‘The Psychology of self in Jung and Kohut’. Journal of the British Association of PsychotherapistsNeumann, Micha. (Israel). ‘The psychology and psychopathology of the second generation of holocaust survivors’. Zeitschrift für Analytische PsychologieReis, Patricia. (U.S.A). ‘Female gender trouble: pursuing the perverse with Madonna’. The San Francisco Jung Institute Library JounalRoose, Jeanine Auger. (Los Angeles). ‘The Still Point of the Turning World’. In Mad Parts of Sane People in AnalysisSamuels, A. (London). ‘Men Under Scrutiny’. Winnicott StudiesSamuels, A. (London). ‘The mirror and the hammer: depth psychology and political transformation’. Commentaries by Figlio, K., Shamdasani, S., Mayers, D. and Papadopoulos, R. with a Reply. Free AssociationsWyly, James. (Chicago). ‘Abstract Art and the Unconscious’, Quadrant
Book Reviews
Authors: Perry Christopher , Jalbert Ronald 
Published: October 2006

Samuels, Andrew, The Political PsycheSamuels, Andrew. The Political PsycheStein, Murray. Solar Conscience/Lunar Conscience: An Essay on the Psychological Foundations of Morality, Lawfulness, and the Sense of JusticeEstés, Clarissa Pinkola. Women who Run with the Wolves: Contacting the Power of the Wild WomanRutter, Virginia Beane. Woman Changing Woman: Restoring the Mother‐Daughter RelationshipMoses, Rafael (ed.). Persistent Shadows of the Holocaust: The Meaning to Those Not Directly AffectedWilcocks, Robert. Maelzel's Chess Player: Sigmund Freud and the Rhetoric of DeceitWagner, Suzanne. Matter of Heart, C.G. Jung: The Extraordinary Journey into the Soul of Man
Book Reviews
Authors: Kugler Paul 
Published: October 2006

Plaut, Alfred. Analysis Analysed: When the Map Becomes the TerritoryPlaut, Alfred. Analysis Analysed: When the Map Becomes the TerritoryCooper, Judy. Speak Of Me As I Am: The Life and Work of Masud KahnMitchell, Rie Rogers and Friedman, Harriet S. Sandplay: Past Present and FutureSmith, J.C. The Neurotic Foundations of Social Order: Psychoanalytic Roots of PatriarchySymington, Neville. Narcissism: A New TheoryHopcke, Robert H. Men's Dreams, Men's Healing: A Psychotherapist Explores a New View of Masculinity through Jungian Dreamwork
Book Reviews
Authors: Perry Christopher , Matthews Boris 
Published: October 2006

Fordham, Michael. The Making of an Analyst: A MemoirRedfearn, Joseph. The Exploding Self: The Creative and Destructive Nuckus of the PersonalityGordon, Rosemary. Bridges: Metaphor for Psychic ProcessesJackson, Murray and Williams, Paul. Unimaginable Storms: A Search for Meaning in PsychosisStevens, anthony. JungWeissman, Judith. Of Two Minds: Poets Who Hear Voices