bluuebunny/crossref_metadata_2025_split huggingface dataset:
Salmonella in healthy pigs: prevalence, serotype diversity and antimicrobial resistance observed during 1998–1999 and 2004–2005 in Japan
Authors: FUTAGAWA-SAITO K. , HIRATSUKA S. , KAMIBEPPU M. , HIROSAWA T. , OYABU K. , FUKUYASU T. 
Published: October 2007

SUMMARYTo determine prevalence, serotype diversity and antimicrobial resistance of Salmonella in healthy pigs, faecal samples from 6771 pigs on 73 farms collected during 1998–1999 and 2004–2005 were examined. Salmonella isolates were serotyped and tested for susceptibility to 22 antimicrobials: benzylpenicillin, ampicillin, amoxicillin, cefazolin, cephaloridine, gentamicin, kanamycin, streptomycin, fradiomycin, colistin, tetracycline, chlortetracycline, oxytetracycline, chloramphenicol, thiamphenicol, sulfadimethoxine, sulfamethoxazole, sulfamethoxypyridazine, trimethoprim, sulfamethoxazole/trimethoprim, norfloxacin and ofloxacin. Farm-level and pig-level Salmonella prevalences were 35·5% and 2·2% in 1998–1999, and 35·7% and 3·3% in 2004–2005. Prevalence by growth stage was 2·4% for sows, 3·3% for weaned pigs, 2·7% for fattening pigs and 3·8% for finishing pigs. The predominant serotypes identified were Agona (28·4%), Typhimurium (17·9%) and Infantis (16·4%) in 1998–1999, and Typhimurium (32·5%), Anatum (24·6%) and Infantis (13·5%) in 2004–2005. Compared with the 1998–1999 isolates, the 2004–2005 isolates showed significantly higher rates of resistance to all the antimicrobials except tetracyclines (P<0·01 to P<0·05) and resistance to ⩾2 antimicrobials [19·4% (13/67) vs. 39·7% (50/126), P<0·01]. This study provides national estimates of Salmonella prevalence in healthy pigs of different growth stages in Japan.
Use of a molecular epidemiological database to track human rabies case histories in South Africa
Authors: COETZEE P. , WEYER J. , PAWESKA J. T. , BURT F. J. , MARKOTTER W. , NEL L. H. 
Published: October 2007

SUMMARYThe KwaZulu Natal and Eastern Cape provinces of South Africa have experienced a serious dog rabies epidemic over the past three decades. Towards a better understanding of this epidemic, we have previously analysed nucleotide sequences of 142 rabies virus specimens that were obtained from these regions during 2003–2004 and provided a molecular description of the geographical distribution of rabies viral variants in the affected provinces. Here, as an extension, we studied five human cases that occurred during 2002–2003 and demonstrated the use of the sequence database in tracking unknown human rabies case histories. We were able to identify the geographical origin of viruses responsible for each human infection and in one case obtained evidence that suggested a non-bite transmission of rabies virus from an infected dog to a child. We argue for the value of this information in surveillance and epidemiological study and in the follow-up and management of potential exposures.
Excess salmonellosis in women in the United States: 1968–2000
Authors: RELLER M. E. , TAUXE R. V. , KALISH L. A. , MØLBAK K. 
Published: October 2007

SUMMARYWe describe recent epidemiological changes in salmonellosis. Linking 1968–2000 NationalSalmonellaSurveillance System to census data, we calculated population-based age- and sex-stratified rates of non-urinary salmonellosis for the top 30 non-typhoidal serotypes. Using 1996–1997, 1998–1999, and 2000–2001 population-based FoodNet surveys, we compared reported diarrhoea, medical visits, and stool cultures. Despite an overall female-to-male incidence rate ratio (FMRR) of 0·99, the sex-specific burden of salmonellosis varied by age (<5 years FMRR 0·92; 5–19 years 0·85; 20–39 years 1·09; 40–59 years 1·23, and ⩾60 years 1·08) and serotype (FMRR range 0·87 for Mississippi to 1·25 for Senftenberg). Serotype-specific FMRRs and median age (range 2 years for Derby to 29 years for Senftenberg) were related (correlation 0·76,P<0·0001). Recently, the relative burden of salmonellosis in women has increased. FoodNet data suggest that this change is real rather than due to differential reporting. Excess salmonellosis in women may reflect differences in exposure or biological susceptibility.
Materials used for seed storage containers: response to Gómez-Campo [Seed Science Research16, 291–294 (2006)]
Authors: Walters Christina 
Published: October 2007

AbstractEfficient seed storage is a shared concern among the growing number of seed banks established for crop improvement or ex situ conservation. Container properties greatly affect seed interactions with the environment and the overall cost and success of seed banking operations. Several material properties contribute to their suitability as seed containers. This paper provides a consolidated list of water vapour permeability properties of thermal plastics commonly used for packaging. Composite packages with layers of film with different properties provide distinct advantages to seed banks. Different seed banks must rank the importance of the various factors depending on their mission and resources. Once the risks, costs and benefits are weighed, an appropriate strategy can be developed that addresses a seed bank's specific needs. Because there are many problems and several solutions, it is likely that strategies will vary among seed banks. This response details variables to consider when selecting seed storage packages, and focuses on water diffusion rates of packages with different compositions. A ‘moisture audit’ will help seed bank operators make informed decisions about packaging.
Seed dormancy in red rice. XII: Population-based analysis of dry-afterripening with a hydrotime model
Authors: Gianinetti Alberto , Alan Cohn Marc 
Published: October 2007

AbstractRed rice (Oryza sativaL.) dispersal units (florets) were dry-afterripened for 0–8 weeks and subsequently incubated at 30°C in polyethylene glycol (PEG) solutions with water potentials from 0 to − 1.6 MPa. Germination percentages and rates increased with dry-afterripening and water potential of the incubation medium. The seed population exhibited a normal distribution of base water potentials (Ψb, i.e. minimum water potential allowing germination) among individual seeds, characterized by three parameters: the hydrotime constant (θH), the mean base water potential (Ψb) and the standard deviation of the base water potential distribution (σΨb). Changes in germination during afterripening could be described by modifications of such parameters, particularlyΨb, which was employed to derive an index, DH(ARX = Ψb(ARX) − Ψb(ARN), where DH(ARX) represents a measure of dormancy of the seed population (in MPa) based on the hydrotime model,Ψb(ARX) is the mean base water potential of the seed population at any afterripening timeX, andΨb(ARN) is the mean water potential of the non-dormant (fully afterripened) population. The introduction of this index permitted interpretation of afterripening as a measurable reduction in the dormancy status of the seed, with progressive acquisition of both full germinative capacity and maximum germination rate, as anticipated by the hydrotime model. Moreover, secondary dormancy was induced proportionally to the reduction in water potential in the dark. Susceptibility to secondary dormancy induction was defined through DI(ARX), an index analogous to DH(ARX). These indices revealed that, in red rice, both breaking of primary dormancy and the inducibility of secondary dormancy followed decay kinetics with different sensitivities to the duration of dry storage.
Pelvic floor sex steroid hormone receptors, distribution and expression in pre‐ and postmenopausal stress urinary incontinent women
Authors: SÖDERBERG MARIE WESTERGREN , JOHANSSON BENGT , MASIRONI BRITT , BYSTRÖM BIRGITTA , FALCONER CHRISTIAN , SAHLIN LENA , EKMAN ORDEBERG GUNVOR 
Published: October 2007

AbstractBackground. Hormonal influence on stress urinary incontinence (SUI) is under debate. Sex steroid hormonal activity is mediated by nuclear receptor proteins. The aim of this study is to identify receptor isoforms and their genetic expression in the pelvic floor extra cellular matrix (ECM), and to compare women with and without SUI before and after menopause. Methods. Sub‐mucosal para‐urethral biopsies from 4 pre‐menopausal and 8 postmenopausal patients with SUI were analysed immunohistochemically regarding estrogen receptors (ER) α and β, the progesterone receptor (PR) (A+B) and B, and the androgen receptor (AR). Six pre‐menopausal and 5 postmenopausal women served as controls. All receptors were scored manually. Additionally, ER‐α and ER‐β were quantified by image analysis. Biopsies from 7 pre‐menopausal and 7 postmenopausal women suffering from SUI were studied by real‐time RT‐PCR for expression of ER‐α, ER‐β, PR and AR. The control group consisted of 5 pre‐menopausal and 5 postmenopausal women. Results. Immunohistochemistry revealed receptor‐positive cells for all isoforms in all groups. Higher ER‐β scores were seen in the pre‐menopausal SUI group compared to controls. Lower PR‐B scores were found after menopause in both groups. The image analysis confirmed that ER‐β was significantly increased in the pre‐menopausal SUI group compared to controls (p = 0.02). By real‐time RT‐PCR, no difference of mRNA expression regarding any receptor was detected between any SUI and control group. ER‐β mRNA levels were low or undetectable. There was a significant down‐regulation of PR among postmenopausal women (p = 0.001). Conclusions. The para‐urethral ECM is a target for sex steroid hormones mediated by the respective receptor. The significant higher expression of ER‐β protein in the pre‐menopausal SUI‐group was not reflected by a corresponding up‐regulation of mRNA which was poorly expressed in all groups.
Individual variation in agrammatism: a single case study of the influence of interaction
Authors: Beeke Suzanne , Wilkinson Ray , Maxim Jane 
Published: October 2007

AbstractBackground: Agrammatic speech can manifest in different ways in the same speaker if task demands change. Individual variation is considered to reflect adaptation, driven by psycholinguistic factors such as underlying deficit. Recently, qualitative investigations have begun to show ways in which conversational interaction can influence the form of an agrammatic speaker's output.Aims: To explore qualitative patterns of individual variation in the output of a single case, in order to address the following questions: (1) in what ways do grammatical structure, verbs and argument structure differ qualitatively between data samples?; and (2) what is the influence of interaction on the structure of utterances?Methods & Procedures: A man with severe and chronic agrammatism is videotaped completing tests of spoken sentence construction, composite, and cartoon strip picture descriptions and a story telling task. In addition, he independently videotapes a sample of conversation with a family member at home. Analyses of these data draw on cognitive neuropsychological, linguistic and psycholinguistic methodologies as well as the data‐driven procedures of conversation analysis.Outcomes & Results: The qualitative analysis uncovers considerable variation between data sets with respect to grammatical structure, verbs and argument structure. The agrammatic speaker appears more skilled at imposing order on his spontaneous speech than the results of sentence construction tests might predict. Interaction influences his output style. Adaptation is found to be a collaborative process that occurs between two speakers in the quest for mutual understanding, not something that takes place within an individual.Conclusions: It is concluded that an interactional approach to agrammatism has the potential to yield important insights into the characteristics of telegraphic speech and individual variation. The failure of sentence‐level tests to capture this individual's skill in producing systematically structured utterances in conversation implies that the assessment of agrammatism could benefit from the additional sampling and analysis of conversational grammar.
Diet studies of seabirds: a review and recommendations
Authors: Barrett Robert T. , Camphuysen Kees (C. J.) , Anker-Nilssen Tycho , Chardine John W. , Furness Robert W. , Garthe Stefan , Hüppop Ommo , Leopold Mardik F. , Montevecchi William A. , Veit Richard R. 
Published: October 2007

AbstractBarrett, R. T., Camphuysen, C. J., Anker-Nilssen, T., Chardine, J. W., Furness, R. W., Garthe, S., Hüppop, O., Leopold, M. F., Montevecchi, W. A., and Veit, R. R. 2007. Diet studies of seabirds: a review and recommendations. – ICES Journal of Marine Science, 64. We review the different methods that are used to collect dietary data from marine birds. We consider their limitations and practicalities and emphasize critical data gaps in our knowledge of the feeding ecology of seabirds (na mely diets outside breeding seasons). To enhance comparability of findings among studies, species, and oceanographic regions, we make recommendations on standards for the reporting of results in the literature.
Marker-Free Transgenic Plants through Genetically Programmed Auto-Excision
Authors: Verweire Dimitri , Verleyen Kristof , De Buck Sylvie , Claeys Martine , Angenon Geert 
Published: October 2007

Abstract
We present here a vector system to obtain homozygous marker-free transgenic plants without the need of extra handling and within the same time frame as compared to transformation methods in which the marker is not removed. By introducing a germline-specific auto-excision vector containing a cre recombinase gene under the control of a germline-specific promoter, transgenic plants become genetically programmed to lose the marker when its presence is no longer required (i.e. after the initial selection of primary transformants). Using promoters with different germline functionality, two modules of this genetic program were developed. In the first module, the promoter, placed upstream of the cre gene, confers CRE functionality in both the male and the female germline or in the common germline (e.g. floral meristem cells). In the second module, a promoter conferring single germline-specific CRE functionality was introduced upstream of the cre gene. Promoter sequences used in this work are derived from the APETALA1 and SOLO DANCERS genes from Arabidopsis (Arabidopsis thaliana) Columbia-0 conferring common germline and single germline functionality, respectively. Introduction of the genetic program did not reduce transformation efficiency. Marker-free homozygous progeny plants were efficiently obtained, regardless of which promoter was used. In addition, simplification of complex transgene loci was observed.
Newly Formed Vacuoles in Root Meristems of Barley and Pea Seedlings Have Characteristics of Both Protein Storage and Lytic Vacuoles
Authors: Olbrich Andrea , Hillmer Stefan , Hinz Giselbert , Oliviusson Peter , Robinson David G. 
Published: October 2007

AbstractPlant cells are considered to possess functionally different types of vacuoles in the same cell. One of the papers cited in support of this concept reported that protein storage and lytic vacuoles in root tips of barley (Hordeum vulgare) and pea (Pisum sativum) seedlings were initially separate compartments that later fused to form a central vacuole during cell elongation. We have reinvestigated the situation in these two roots using immunogold electron microscopy as well as immunofluorescence microscopy of histological sections. Using antisera generated against the whole protein of α-tonoplast intrinsic protein (TIP) as well as specific C-terminal TIP peptide antisera against α-, γ-, and δ-TIP, together with antisera against the storage proteins barley lectin and pea legumin and vicilin, we were unable to obtain evidence for separate vacuole populations. Instead, our observations point to the formation of a single type of vacuole in cells differentiating both proximally and distally from the root meristem. This is a hybrid-type vacuole containing storage proteins and having both α- and γ-TIPs, but not δ-TIP, in its tonoplast. As cells differentiate toward the zone of elongation, their vacuoles are characterized by increasing amounts of γ-TIP and decreasing amounts of α-TIP.
Building Blocks for Plant Gene Assembly
Authors: Karimi Mansour , Bleys Annick , Vanderhaeghen Rudy , Hilson Pierre 
Published: October 2007

Abstract
The MultiSite Gateway cloning system, based on site-specific recombination, enables the assembly of multiple DNA fragments in predefined order, orientation, and frame register. To streamline the construction of recombinant genes for functional analysis in plants, we have built a collection of 36 reference Gateway entry clones carrying promoters, terminators, and reporter genes, as well as elements of the LhG4/LhGR two-component system. This collection obeys simple engineering rules. The genetic elements (parts) are designed in a standard format. They are interchangeable, fully documented, and can be combined at will according to the desired output. We also took advantage of the MultiSite Gateway recombination sites to create vectors in which two or three genes can be cloned simultaneously in separate expression cassettes. To illustrate the flexibility of these core resources for the construction of a wide variety of plant transformation vectors, we generated various transgenes encoding fluorescent proteins and tested their activity in plant cells. The structure and sequence of all described plasmids are accessible online at http://www.psb.ugent.be/gateway/. All accessions can be requested via the same Web site.
MPB2C, a Microtubule-Associated Protein, Regulates Non-Cell-Autonomy of the Homeodomain Protein KNOTTED1
Authors: Winter Nikola , Kollwig Gregor , Zhang Shoudong , Kragler Friedrich 
Published: October 2007

Abstract
Plasmodesmata establish a pathway for the intercellular trafficking of viral movement proteins and endogenous non-cell-autonomous proteins, such as the two closely related meristem-maintaining KNOTTED1-like homeobox (KNOX) proteins Zea mays KNOTTED1 (KN1) and Arabidopsis thaliana SHOOTMERISTEMLESS (STM). KNOX family members are DNA binding proteins that regulate the transcriptional activity of target genes in conjunction with BEL1-like homeodomain proteins. It has been shown previously, using in vivo transport assays, that the C-terminal domain of KN1, including the homeodomain, is necessary and sufficient for cell-to-cell transport through plasmodesmata. Here, using interaction and coexpression assays, we demonstrate that the microtubule-associated and viral movement protein binding protein MPB2C from Nicotiana tabacum, and its homolog in Arabidopsis, At MPB2C, are KN1/STM binding factors. Interaction between the MPB2C proteins and KN1/STM was mapped to the KN1 homeodomain, a region not essential for heterodimerization with BEL1. Expression of MPB2C in single cells prevented KN1 cell-to-cell movement. Furthermore, in vivo trichome rescue studies established that MPB2C negatively regulates KN1 association to plasmodesmata and, consequently, cell-to-cell transport. These findings are discussed in terms of the role played by MPB2C proteins in regulating the cell-to-cell trafficking of homeodomain proteins in plants.
The GID1-Mediated Gibberellin Perception Mechanism Is Conserved in the Lycophyte Selaginella moellendorffii but Not in the Bryophyte Physcomitrella patens
Authors: Hirano Ko , Nakajima Masatoshi , Asano Kenji , Nishiyama Tomoaki , Sakakibara Hitoshi , Kojima Mikiko , Katoh Etsuko , Xiang Hongyu , Tanahashi Takako , Hasebe Mitsuyasu , Banks Jo Ann , Ashikari Motoyuki , Kitano Hidemi , Ueguchi-Tanaka Miyako , Matsuoka Makoto 
Published: October 2007

Abstract
In rice (Oryza sativa) and Arabidopsis thaliana, gibberellin (GA) signaling is mediated by GIBBERELLIN-INSENSITIVE DWARF1 (GID1) and DELLA proteins in collaboration with a GA-specific F-box protein. To explore when plants evolved the ability to perceive GA by the GID1/DELLA pathway, we examined these GA signaling components in the lycophyte Selaginella moellendorffii and the bryophyte Physcomitrella patens. An in silico search identified several homologs of GID1, DELLA, and GID2, a GA-specific F-box protein in rice, in both species. Sm GID1a and Sm GID1b, GID1 proteins from S. moellendorffii, showed GA binding activity in vitro and interacted with DELLA proteins from S. moellendorffii in a GA-dependent manner in yeast. Introduction of constitutively expressed Sm GID1a, Sm G1D1b, and Sm GID2a transgenes rescued the dwarf phenotype of rice gid1 and gid2 mutants. Furthermore, treatment with GA4, a major GA in S. moellendorffii, caused downregulation of Sm GID1b, Sm GA20 oxidase, and Sm GA3 oxidase and degradation of the Sm DELLA1 protein. These results demonstrate that the homologs of GID1, DELLA, and GID2 work in a similar manner in S. moellendorffii and in flowering plants. Biochemical studies revealed that Sm GID1s have different GA binding properties from GID1s in flowering plants. No evidence was found for the functional conservation of these genes in P. patens, indicating that GID1/DELLA-mediated GA signaling, if present, differs from that in vascular plants. Our results suggest that GID1/DELLA-mediated GA signaling appeared after the divergence of vascular plants from the moss lineage.
A Circadian Rhythm Set by Dusk Determines the Expression of FT Homologs and the Short-Day Photoperiodic Flowering Response in Pharbitis
Authors: Hayama Ryosuke , Agashe Bhavna , Luley Elisabeth , King Rod , Coupland George 
Published: October 2007

Abstract
Seasonal control of flowering through responsiveness to daylength shows extreme variation. Different species flower in response to long days or short days (SDs), and this difference evolved several times. The molecular mechanisms conferring these responses have been compared in detail only in Arabidopsis thaliana and rice (Oryza sativa) and suggest that a conserved pathway confers daylength responses through regulation of FLOWERING LOCUS T (FT) transcription by CONSTANS (CO). We studied Pharbitis (Ipomoea nil; formerly, Pharbitis nil), a widely used SD model species and a member of the Convolvulaceae, and showed using transgenic plants together with detailed expression analysis that two putative orthologs of FT (Pn FT1 and Pn FT2) promote flowering specifically under SDs. These genes are expressed only under SDs, and light flashes given during the night reduce their expression and prevent flowering. We demonstrate that in Pharbitis a circadian rhythm set by the light-to-dark transition at dusk regulates Pn FT expression, which rises only when the night is longer than 11 h. Furthermore, Pharbitis accessions that differ in their critical night-length responses express Pn FT at different times after dusk, demonstrating that natural genetic variation influencing the clock regulating Pn FT expression alters the flowering response. In these assays, Pn FT mRNA abundance was not related to Pn CO expression, suggesting that Pn FT may be regulated by a different transcription factor in Pharbitis. We conclude that SD response in Pharbitis is controlled by a dedicated light sensitive clock, set by dusk, that activates Pn FT transcription in darkness, a different mechanism for measuring daylength than described for Arabidopsis and rice.