bluuebunny/crossref_metadata_2025_split huggingface dataset:
Global research trends and emerging opportunities for integrin adhesion complexes in cardiac repair: a scientometric analysis
Authors: Lv Jiayu , Fu Zhenyue , Zheng Haoran , Song Qingqiao 
Published: April 2024

ObjectiveCardiac regenerative medicine has gained significant attention in recent years, and integrins are known to play a critical role in mediating cardiac development and repair, especially after an injury from the myocardial infarction (MI). Given the extensive research history and interdisciplinary nature of this field, a quantitative retrospective analysis and visualization of related topics is necessary.Materials and methodsWe performed a scientometric analysis of published papers on cardiac integrin adhesion complexes (IACs), including analysis of annual publications, disciplinary evolution, keyword co-occurrence, and literature co-citation.ResultsA total of 2,664 publications were finally included in the past 20 years. The United States is the largest contributor to the study and is leading this area of research globally. The journal Circulation Research attracts the largest number of high-quality publications. The study of IACs in cardiac repair/regenerative therapies involves multiple disciplines, particularly in materials science and developmental biology. Keywords of research frontiers were represented by Tenasin-C (2019–2023) and inflammation (2020–2023).ConclusionIntegrins are topics with ongoing enthusiasm in biological development and tissue regeneration. The rapidly emerging role of matricellular proteins and non-protein components of the extracellular matrix (ECM) in regulating matrix structure and function may be a further breakthrough point in the future; the emerging role of IACs and their downstream molecular signaling in cardiac repair are also of great interest, such as induction of cardiac proliferation, differentiation, maturation, and metabolism, fibroblast activation, and inflammatory modulation.
Effect of medroxyprogesterone acetate dose in progestin-primed ovarian stimulation on pregnancy outcomes in poor ovarian response patients with different body mass index levels
Authors: Zhang Qianjie , He Shaojing , Meng Yicen , Yin Tailang , Ming Lei , Yang Jing , Li Saijiao 
Published: April 2024

BackgroundFor the poor ovarian response (POR) population, the relationship between medroxyprogesterone acetate (MPA) dose in progestin-primed ovarian stimulation (PPOS) and clinical outcome is still unclear. This study aims to explore the effect of MPA dose in PPOS on clinical outcomes in POSEIDON group 3 and 4 patients with different body mass index (BMI) levels, hoping to provide clinical doctors with better options for controlled ovarian hyperstimulation (COH) programs.MethodsThis is a retrospective analysis of 253 oocyte retrieval cycles of POSEIDON group 3 and 4 patients who underwent PPOS protocol in IVF/ICSI treatment at the Reproductive Medical Center of Renmin Hospital of Wuhan University from March 2019 to April 2022. The effects of different MPA doses (8 mg/d or 10 mg/d) on pregnancy outcomes were compared in normal BMI (18.5–24 kg/m2) and high BMI (≥24 kg/m2) patients, and multivariate logistic regression analysis was performed to analyze the factors affecting pregnancy outcomes.ResultsFor normal BMI patients, the 8-mg/d MPA group had a higher embryo implantation rate (33.78% vs. 18.97%, P = 0.012). For high BMI patients, the 10-mg/d MPA group had a higher HCG positive rate (55.00% vs. 25.00%, P = 0.028), clinical pregnancy rate (50.00% vs. 20.00%, P = 0.025), and cumulative pregnancy rate (37.74% vs. 13.79%, P = 0.023) compared with the 8-mg/d MPA group. There was no significant difference in cumulative live birth rate between the 8-mg/d and 10-mg/d MPA groups in patients with normal or high BMI. The results of multivariate logistic regression showed a significant correlation between MPA dose and cumulative pregnancy in the high BMI population (OR = 0.199, 95% CI: 0.046~0.861, P = 0.031).ConclusionsFor POR patients with high BMI, 10 mg/d of MPA in the PPOS protocol had a higher cumulative pregnancy rate than 8 mg/d of MPA, but it had no significant effect on the cumulative live birth rate.
Study on the induced effect of bedding weakness in deep shale gas reservoir on hydraulic fractures propagation
Authors: Duan Guifu , Mou Jianye , Liu Zhaoyi , Han Lingling , Cui Hanzhuo 
Published: April 2024

Shale gas, as an important unconventional oil and gas resource, plays an important role in energy supply. Due to the strong mechanical heterogeneity and compactness, which requires the use of fracturing to crush the formation to obtain industrial production capacity. Therefore, it is very important to analyze shale’s mechanical properties and fracturing propagation laws. In this paper, the shale numerical model is established by adopting discrete element method (DEM). The mesoscopic constitutive parameters of shale with different matrix and bedding strength are determined based on rock samples tests. The reliability of the model is verified by finite element method. And the fracture propagation laws under the influence of shale beddings are studied. The results show that the existence of bedding fractures leads to the nonuniformity of fractures propagation in shale reservoirs. The stress difference of 5 MPa and the approach Angle of 75° are the key factors affecting the interaction between hydraulic fractures and natural fractures. As the bedding number increases, the borehole pressure increases and the total number of fractures’ propagation decreases. The results provide a theoretical basis for further understanding of fractures’ propagation in deep shale reservoirs, and have important guiding significance for optimization and improvement of fracture complexity in the subsequent construction.
Modeling the impacts of hot drought on forests in Texas
Authors: Lawal Shakirudeen , Costanza Jennifer , Koch Frank H. , Scheller Robert M. 
Published: April 2024

IntroductionUnder climate change, drought is increasingly affecting forest ecosystems, with subsequent consequences for ecosystem services. An historically exceptional drought in Texas during 2011 caused substantial tree mortality. We used 2004–2019 Forest Inventory and Analysis (FIA) data and state-wide weather data to examine the climatic conditions associated with this elevated tree mortality.MethodsWe measured moisture extremes (wet to dry) using the Standardized Precipitation Evapotranspiration Index (SPEI) at two timescales (12- and 36-month). We quantified heat wave severity using the Heat Wave Magnitude Index daily (HWMId) over the same period. We performed statistical modeling of the relationship between tree mortality and these indices across four Texas regions (Southeast, Northeast, North Central, and South) and for prominent tree genera (Pinus, Juniperus, Quercus, Liquidambar, Prosopis, and Ulmus) as well as selected species: Quercus stellata, Q. virginiana, and Q. nigra.ResultsThe highest tree mortality was observed between 2011 and 2013. We found similarity in the trends of the 12- and 36-month SPEI, both of which exhibited more extreme negative intensities (i.e., drought) in 2011 than other years. Likewise, we found that the extreme heat experienced in 2011 was much greater than what was experienced in other years. The heat waves and drought were more intense in East (i.e., Southeast and Northeast) Texas than Central (i.e., North Central and South) Texas. In gradient boosted regression models, the 36-month SPEI had a stronger empirical relationship with tree mortality than the 12-month SPEI in all regions except South Texas, where HWMId had more influence than SPEI at either timescale. The correlations between moisture extremes, extreme heat, and tree mortality were high; typically, mortality peaked after periods of extreme moisture deficit rather than surplus, suggesting that the mortality was associated with hot drought conditions. The effects of extreme heat outweighed those of SPEI for all tree genera except oaks (Quercus). This was also true for oak species other than water oak (Q. nigra). In generalized additive models, the median trend showed tree mortality of Prosopis was higher during conditions of moderate drought (SPEI36 ∼ –1) or worse, but for Pinus and Quercus, mortality started to become apparent under mild drought conditions (SPEI36 ∼ –0.5). The impacts of extreme heat on the mortality of Juniperus occurred when heat wave magnitude reached the ultra extreme category (HWMId &gt; 80) but occurred at lower magnitude for Liquidambar.DiscussionIn summary, we identified risks to Texas forest ecosystems from exposure to climate extremes. Similar exposure can be expected to occur more frequently under a changing climate.
Antioxidant network-based signatures cluster glioblastoma into distinct redox-resistant phenotypes
Authors: Yang Yihan , More Sanket , De Smet Frederik , De Vleeschouwer Steven , Agostinis Patrizia 
Published: April 2024

IntroductionAberrant reactive oxygen species (ROS) production is one of the hallmarks of cancer. During their growth and dissemination, cancer cells control redox signaling to support protumorigenic pathways. As a consequence, cancer cells become reliant on major antioxidant systems to maintain a balanced redox tone, while avoiding excessive oxidative stress and cell death. This concept appears especially relevant in the context of glioblastoma multiforme (GBM), the most aggressive form of brain tumor characterized by significant heterogeneity, which contributes to treatment resistance and tumor recurrence. From this viewpoint, this study aims to investigate whether gene regulatory networks can effectively capture the diverse redox states associated with the primary phenotypes of GBM.MethodsIn this study, we utilized publicly available GBM datasets along with proprietary bulk sequencing data. Employing computational analysis and bioinformatics tools, we stratified GBM based on their antioxidant capacities and evaluated the distinctive functionalities and prognostic values of distinct transcriptional networks in silico.ResultsWe established three distinct transcriptional co-expression networks and signatures (termed clusters C1, C2, and C3) with distinct antioxidant potential in GBM cancer cells. Functional analysis of each cluster revealed that C1 exhibits strong antioxidant properties, C2 is marked with a discrepant inflammatory trait and C3 was identified as the cluster with the weakest antioxidant capacity. Intriguingly, C2 exhibited a strong correlation with the highly aggressive mesenchymal subtype of GBM. Furthermore, this cluster holds substantial prognostic importance: patients with higher gene set variation analysis (GSVA) scores of the C2 signature exhibited adverse outcomes in overall and progression-free survival.ConclusionIn summary, we provide a set of transcriptional signatures that unveil the antioxidant potential of GBM, offering a promising prognostic application and a guide for therapeutic strategies in GBM therapy.
MLXIPL associated with tumor-infiltrating CD8+ T cells is involved in poor prostate cancer prognosis
Authors: Fan Yuanming , Ge Yuqiu , Niu Kaiming , Li Ying , Qi Lian-Wen , Zhu Haixia , Ma Gaoxiang 
Published: April 2024

IntroductionWithin tumor microenvironment, the presence of preexisting antitumor CD8+ T Q7 cells have been shown to be associated with a favorable prognosis in most solid cancers. However, in the case of prostate cancer (PCa), they have been linked to a negative impact on prognosis.MethodsTo gain a deeper understanding of the contribution of infiltrating CD8+ T cells to poor prognosis in PCa, the infiltration levelsof CD8+ T cells were estimated using the TCGA PRAD (The Cancer Genome Atlas Prostate Adenocarcinoma dataset) and MSKCC (Memorial Sloan Kettering Cancer Center) cohorts.ResultsBioinformatic analyses revealed that CD8+ T cells likely influence PCa prognosis through increased expression of immune checkpoint molecules and enhanced recruitment of regulatory T cells. The MLXIPL was identified as the gene expressed in response to CD8+ T cell infiltration and was found to be associated with PCa prognosis. The prognostic role of MLXIPL was examined in two cohorts: TCGA PRAD (p = 2.3E-02) and the MSKCC cohort (p = 1.6E-02). Subsequently, MLXIPL was confirmed to be associated with an unfavorable prognosis in PCa, as evidenced by an independent cohort study (hazard ratio [HR] = 2.57, 95% CI: 1.42- 4.65, p = 1.76E-03).DiscussionIn summary, the findings suggested that MLXIPL related to tumor-infiltrating CD8+ T cells facilitated a poor prognosis in PCa.
Predicting effect of anti-PD-1/PD-L1 inhibitors therapy for hepatocellular carcinoma by detecting plasma metabolite based on UHPLC-MS
Authors: Liu Botong , Shi Jinyu , Su Rui , Zheng Ran , Xing Fan , Zhang Yuan , Wang Nanya , Chen Huanwen , Feng Shouhua 
Published: April 2024

IntroductionAnti-PD-1/PD-L1 inhibitors therapy has become a promising treatment for hepatocellular carcinoma (HCC), while the therapeutic efficacy varies significantly among effects for individual patients are significant difference. Unfortunately, specific predictive biomarkers indicating the degree of benefit for patients and thus guiding the selection of suitable candidates for immune therapy remain elusive.no specific predictive biomarkers are available indicating the degree of benefit for patients and thus screening the preferred population suitable for the immune therapy. MethodsUltra-high-pressure liquid chromatography-mass spectrometry (UHPLC-MS) considered is an important method for analyzing biological samples, since it has the advantages of high rapid, high sensitivity, and high specificity. Ultra-high-pressure liquid chromatography-mass spectrometry (UHPLC-MS) has emerged as a pivotal method for analyzing biological samples due to its inherent advantages of rapidity, sensitivity, and specificity. In this study, potential metabolite biomarkers that can predict the therapeutic effect of HCC patients receiving immune therapy were identified by UHPLC-MS. ResultsA partial least-squares discriminant analysis (PLS-DA) model was established using 14 glycerophospholipid metabolites mentioned above, and good prediction parameters (R2 = 0.823, Q2 = 0.615, prediction accuracy = 0.880 and p &lt; 0.001) were obtained. The relative abundance of glycerophospholipid metabolite ions is closely related to the survival benefit of HCC patients who received immune therapy. DiscussionThis study reveals that glycerophospholipid metabolites play a crucial role in predicting the efficacy of immune therapy for HCC.
Comparative transcriptome analysis reveals immune-related genes involved in allograft and xenograft transplantation in Pinctada fucata
Authors: Zheng Yusi , Wang Pei , Guo Ying , Bai Lirong , Yu Dahui , Zhao Sen 
Published: April 2024

BackgroundThe marine pearl culture industry is a key industry in the Beibu Gulf of China that achieves large-scale pearl production by artificial nucleus insertion in pearls. High-quality pearls can produced by xenotransplantation, but allotransplantation or xenotransplantation can lead to various immune responses, resulting in nucleus rejection or even the recipient shell death and thereby causing significant losses in pearl production.MethodsFew studies have investigated the immune defenses of oysters related to allografts and xenografts. In this study, transcriptomic comparisons of allograft and xenograft Pinctada fucata haemocytes were conducted to identify genes associated with immune responses.ResultsA total of 33.11 Gbp of clean reads were generated from five P. fucata haemocytes. De-novo assembly of quality-filtered reads generated a total of 26,526 unigenes, with 22,002 known genes and 4,524 predicted novel genes. In addition, 34,904 novel transcripts were detected, with 15,620 novel alternative splicing isoforms of known protein coding genes and 4,605 belonging to novel protein coding genes, with the remaining 14,679 comprising long non-coding RNA transcripts. Functional enrichment analysis of immune-related differentially expressed genes (DEGs) using the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases revealed 36–44 significantly enriched GO terms and 34 significantly enriched KEGG pathways. Ten DEGs were subjected to validation of expression levels using RT-q PCR analysis, revealing generally consistent values as the high-throughput sequencing data.ConclusionOyster haemocytes were comprehensively evaluated in this study using transcriptomic comparisons and with a focus on immune-related functional genes and pathways. The results revealed numerous DEGs related to immune function that can serve as the basis for subsequent immune response analysis of allotransplantation and xenotransplantation.
Use of the Canadian CT head rule for patients on anticoagulant/anti-platelet therapy presenting with mild traumatic brain injury: prospective observational study
Authors: Uccella Laura , Riboni Cristiana , Polinelli Francesco , Biondi Carola , Uccheddu Graziano , Petrino Roberta , Majno-Hurst Pietro 
Published: April 2024

Background and importanceMild traumatic brain injury (mTBI) is a frequent presentation in Emergency Department (ED). There are standardised guidelines, the Canadian CT Head Rule (CCHR), for CT scan in mTBI that rule out patients on either anticoagulant or anti-platelet therapy. All patients with these therapies undergo a CT scan irrespectively of other consideration.ObjectiveTo determine whether standard guidelines could be applied to patients on anticoagulants or anti-platelet drugs.Design, settings, and participants1,015 patients with mTBI and Glasgow Coma Score (GCS) of 15 were prospectively recruited, 509 either on anticoagulant or anti-platelet therapy and 506 on neither. All patients on neither therapy underwent CT scan following guidelines. All patients with mTBI on either therapy underwent CT scan irrespective of the guidelines.Outcome measure and analysisPrimary endpoint was the incidence of post-traumatic intracranial bleeding in patients either on anticoagulants or anti-platelet drugs and in patients who were not on these therapies. Bayesian statistical analysis with calculation of Confidence Intervals (CI) was then performed.Main resultsSixty scans were positive for bleeding: 59 patients fulfilled the criteria and 1 did not. Amongst patients with haemorrhage, 24 were on either therapy and only one did not meet the guidelines but in this patient the CT scan was performed before 2 h from the mTBI. Patients on either therapy did not have higher bleeding rates than patients on neither. There were higher bleeding rates in patients on anti-platelet therapy who met the guidelines vs. patients who did not. These rates overlapped with patients on neither therapy, meeting CCHR.ConclusionThe CCHR might be used for mTBI patients on either therapy. Anticoagulants and anti-platelet drugs should not be considered a risk factor for patients with mTBI and a GCS of 15. Multicentric studies are needed to confirm this result.
Subjective benefits from wearing self-fitting over-the-counter hearing aids in the real world
Authors: Sheng Tong , Pasquesi Lauren , Gilligan Jennifer , Chen Xing-Jie , Swaminathan Jayaganesh 
Published: April 2024

IntroductionIn 2022, the US Food and Drug Administration enacted final regulations to establish the category of over-the-counter (OTC) hearing aids aimed at reducing barriers to access hearing health care for individuals with self-perceived mild to moderate hearing loss. However, given the infancy of this device category, the effectiveness of OTC hearing aids in real-world environments is not yet well understood.Methods and resultsTo gain insights into the perceived benefit of self-fitting OTC hearing aids, a two-pronged investigation was conducted. In the primary investigation, 255 active users of a self-fitting OTC hearing aid were surveyed on their perceived benefit using an abridged form of the Satisfaction with Amplification in Daily Living (SADL) scale. The mean global (4.9) and subscale scores (Positive Effect (PE): 4.3; Negative Features (NF): 4.3; Personal Image (PI): 6.1) were within the range of those previously reported for users of prescription hearing aids. In the secondary investigation, 29 individuals with self-reported hearing impairment but no prior experience with the investigational self-fitting OTC hearing aids used the devices and reported their perceived benefit and satisfaction following short-term usage. For this prospective group, the global SADL (5.4) and subscale scores (PE: 4.8; NF: 4.9; PI: 6.5) following a minimum of 10 weeks of real-world use were also within the range of those previously reported for traditional hearing aid users. In addition, this prospective group was also asked quality of life questions which assessed psychological benefits of hearing aid use. Responses to these items suggest hearing aid related improvements in several areas spanning emotional health, relationships at home and at work, social life, participation in group activities, confidence and feelings about one’s self, ability to communicate effectively, and romance.DiscussionConverging data from these investigations suggest that self-fitting OTC hearing aids can potentially provide their intended users with a level of subjective benefit comparable to what prescription hearing aid users might experience.
A novel Nutrient Rich Food (NRFa11.3) score uses flavonoids and carotenoids to identify antioxidant-rich spices, herbs, vegetables, and fruit
Authors: Drewnowski Adam 
Published: April 2024

IntroductionNutrient profiling (NP) models designed to evaluate the healthfulness of plant-based foods ought to incorporate bioactive phytochemicals. Herbs and spices are one food group of current interest.MethodsTwo new versions of the well-established Nutrient Rich Food (NRF) index were applied to spices, herbs, vegetables, fruit, and other plant-based foods. Analyses used the US Department of Agriculture (USDA) SR-28 nutrient composition database merged with the USDA Expanded Flavonoid database 3.3. The NRF4.3 model was based on protein, fiber, potassium, and vitamin C. The NRFa11.3 model was based on micronutrients with reported antioxidant activity (vitamin C, vitamin E, selenium, copper, and zinc), carotenoids (alpha and beta carotene, beta-cryptoxanthin, lycopene, lutein/zeaxantin) and flavonoids. Saturated fat, added sugar, and sodium were nutrients to limit. The NRF algorithm was based on sums of percent daily values (%DVs) capped at 100%.ResultsThe NRF4.3 model awarded high scores to herbs and spices, cocoa powder, and nuts, but did not discriminate well among vegetables and fruit. The NRFa11.3 model performed better. Green leafy, red orange and cruciferous vegetables had the highest carotenoid content. Highest in flavonoids were cocoa powder, herbs and spices, and berries. Highest combined NRFa11.3 values were observed for herbs and spices, green leafy vegetables, cocoa, nuts, and red-orange and cruciferous vegetables.DiscussionFresh and dry herbs and spices, often ignored by NP models, were particularly nutrient-rich and may provide non-negligible amounts of key phytonutrients to the human diet.