bluuebunny/crossref_metadata_2025_split huggingface dataset:
The Berry and Reinhardt Autoconversion Parameterization: A Digest
Authors: Gilmore Matthew S. , Straka Jerry M. 
Published: April 2008

Abstract
The simplified version of the Berry and Reinhardt parameterization used for initiating rain from cloud droplets is presented and is compared with 12 other versions of itself from the literature. Many of the versions that appear to be different from each other can be brought into agreement with the original parameterization by making the same assumptions: a mean diameter based upon mass or volume and distribution shape parameters chosen to give the same cloud mass relative variance as the original Berry and Reinhardt parameterization. However, there are differences in how authors have chosen to parameterize the cloud number concentration sink and rain number concentration source, and those choices, along with model limitations, have important impacts on rain development within the scheme. These differences among versions are shown to have important time-integrated feedbacks upon the developing initial rain distribution. Three of 12 implementations of the bulk scheme are shown to be able to reproduce the original Berry and Reinhardt bin-model solutions very well, and about 6 of 12 do poorly.
Statistical Characteristics of Raindrop Size Distribution in Southwest Monsoon Season
Authors: Kirankumar N. V. P. , Rao T. Narayana , Radhakrishna B. , Rao D. Narayana 
Published: April 2008

Abstract
Raindrop size distribution (DSD) parameters are retrieved from dual-frequency (UHF and VHF) wind profiler measurements made at Gadanki, India, in a summer monsoon season. The convoluted UHF spectra are first corrected for vertical air motion and spectral broadening (using VHF measurements) and later are used for deriving DSD parameters. Two distinctly different case studies, a mesoscale convective system and a pure stratiform precipitation system, have been considered for a detailed study. DSD parameters obtained in these case studies reveal systematic variations of DSD from case to case and also from one rain regime to another within the same precipitating system. A statistical study has been carried out using the profiler data collected during the passage of 16 rain events. The retrieved DSD profiles are divided into separate rain regimes (stratiform and convection), based on reflectivity, to examine salient microphysical characteristics and the vertical variability of DSD in different precipitation regimes. The distribution of DSD parameters is, in general, wider in the convective rain regime than in the stratiform regime, particularly below 2.4 km. The vertical variation of the gamma parameter distribution in the stratiform rain regime is minimal, indicating that the microphysical processes (growth and decay), which alter the rain DSD, may be in equilibrium. On the other hand, the distribution in the convective rain regime appears to be more complex, with the mean profile of the shape parameter varying significantly with height. The observed vertical variability of the gamma parameters and the median volume diameter in the convective rain regime is attributed to two major microphysical processes: evaporation and breakup. The role of other processes, like drop sorting and collision–coalescence, in altering the DSD parameters is also discussed. The present statistics, representing continental monsoon rainfall, are compared with the existing statistics at Darwin, Australia, and the results are discussed in light of DSD differences in oceanic and continental monsoon precipitation.
Comparison of Hurricane Return Levels Using Historical and Geological Records
Authors: Elsner James B. , Jagger Thomas H. , Liu Kam-biu 
Published: April 2008

Abstract
Hurricane return levels estimated using historical and geological information are quantitatively compared for Lake Shelby, Alabama. The minimum return level of overwash events recorded in sediment cores is estimated using a modern analog (Hurricane Ivan of 2004) to be 54 m s−1 (105 kt) for a return period of 318 yr based on 11 events over 3500 yr. The expected return level of rare hurricanes in the observed records (1851–2005) at this location and for this return period is estimated using a parametric statistical model and a maximum likelihood procedure to be 73 m s−1 (141 kt), with a lower bound on the 95% confidence interval of 64 m s−1 (124 kt). Results are not significantly different if data are taken from the shorter 1880–2005 period. Thus, the estimated sensitivity of Lake Shelby to overwash events is consistent with the historical record given the model. In fact, assuming the past is similar to the present, the sensitivity of the site to overwash events as estimated from the model is likely more accurately set at 64 m s−1.
Spectral Retrieval of Latent Heating Profiles from TRMM PR Data. Part III: Estimating Apparent Moisture Sink Profiles over Tropical Oceans
Authors: Shige Shoichi , Takayabu Yukari N. , Tao Wei-Kuo 
Published: April 2008

Abstract
The spectral latent heating (SLH) algorithm was developed to estimate apparent heat source (Q1) profiles for the Tropical Rainfall Measuring Mission (TRMM) precipitation radar (PR) in Parts I and II of this study. In this paper, the SLH algorithm is used to estimate apparent moisture sink (Q2) profiles. The procedure of Q2 retrieval is the same as that of heating retrieval except for using the Q2 profile lookup tables derived from numerical simulations of tropical cloud systems from the Tropical Ocean and Global Atmosphere (TOGA) Coupled Ocean–Atmosphere Response Experiment (COARE) utilizing a cloud-resolving model (CRM). The Q2 profiles were reconstructed from CRM-simulated parameters with the COARE table and then compared with CRM-simulated “true” Q2 profiles, which were computed directly from the water vapor equation in the model. The consistency check indicates that discrepancies between the SLH-reconstructed and CRM-simulated profiles for Q2, especially at low levels, are larger than those for Q1 and are attributable to moistening for the nonprecipitating region that SLH cannot reconstruct. Nevertheless, the SLH-reconstructed total Q2 profiles are in good agreement with the CRM-simulated ones. The SLH algorithm was applied to PR data, and the results were compared with Q2 profiles derived from the budget study. Although discrepancies between the SLH-retrieved and sounding-based profiles for Q2 for the South China Sea Monsoon Experiment (SCSMEX) are larger than those for heating, key features of the vertical profiles agree well. The SLH algorithm can also estimate differences of Q2 between the western Pacific Ocean and the Atlantic Ocean, consistent with the results from the budget study.
Performance and Uncertainty of CNR1 Net Radiometers during a One-Year Field Comparison
Authors: Michel Dominik , Philipona Rolf , Ruckstuhl Christian , Vogt Roland , Vuilleumier Laurent 
Published: April 2008

Abstract
Net radiation flux in correlation with surface energy budget, snowmelt, glacier ice balance, and forest or agricultural flux exchange investigations is measured in numerous field experiments. Instrument costs and energy consumption versus performance and uncertainty of net radiation instruments has been widely discussed. Here the authors analyze and show performance and uncertainty of two Kipp and Zonen CNR1 net radiometers, which were compared to high standard reference radiation instruments measuring individual shortwave and longwave downward and upward flux components. The intercomparison was aimed at investigating the performance of the radiometers under different climatological conditions and was made over one year at the midlatitude Baseline Surface Radiation Network (BSRN) station in Payerne, Switzerland (490 MSL). Of the two CNR1 radiometers tested, one was installed in a ventilation and heating system, whereas the other was mounted without ventilation and heating. Uncertainties of the different flux components were found to be larger for shortwave than longwave radiation and larger for downward than upward components. Using the single sensitivity coefficient provided by the manufacturer, which for CNR1 radiometers conditions using all four sensors, rather large root-mean-square differences between 2 and 14 W m−2 were measured for the individual components for hourly averages and between 2 and 12 W m−2 for daily averages. The authors then performed a field calibration, comparing each individual sensor to the reference instrument for one particular day. With the individual field calibration the uncertainty of hourly averages was reduced significantly for all components of the ventilated and heated instrument. For the unventilated CNR1 uncertainties could not be reduced significantly for all sensors. The total net radiation uncertainty of both CNR1 is rather large with up to 26% on daily averages (∼10 W m−2) for the original sensitivity coefficients and without field calibration. Only with the field calibration and for the ventilated and heated CNR1 net radiometer is an uncertainty of 10% of the daily totals of total net radiation reached, as claimed by the manufacturer.
Satellite Estimates and Shipboard Observations of Downward Radiative Fluxes at the Ocean Surface
Authors: Guo G. , Coakley J. A. 
Published: April 2008

Abstract
Clouds and the Earth’s Radiant Energy System (CERES) uses a suite of instruments on the Terra and Aqua satellites combined with analyzed weather data and information on surface conditions to estimate surface radiative fluxes. CERES estimates for the Terra satellite were compared with measurements of the surface radiative fluxes collected with the research vessels (RVs) Wecoma and Thomas G. Thompson radiometers for cruises off the Oregon coast undertaken during 2000–03. To assess the shipboard measurements, the radiometer observations were analyzed to identify cloud-free conditions characterized by ∼1–2 h of relatively stable radiative fluxes. Fluxes for the cloud-free conditions were compared with those calculated using profiles of temperature and humidity from analyzed meteorological fields for the times and locations of the measurements and broadband radiative transfer models. For summertime conditions along the Oregon coast, and assuming a marine aerosol having 0.55-μm optical depth of 0.05, modeled and observed values of the shortwave flux agreed to within 1%–2%. Similar comparisons for the downward cloud-free longwave flux were within 1%–3%. This agreement also held for the CERES surface radiative flux estimates with CERES cloud-free fields of view for ocean scenes within 50 km of the ship being compared with 30-min averages of the shipboard measurements centered on the times of the Terra overpass. Using the CERES observations to identify cloud-free conditions for the Wecoma revealed that in some cases the shipboard measurements of the shortwave flux varied erratically. Criteria were adopted to avoid such behavior, yielding periods in which the surface radiative fluxes were reasonably stable for a range of cloud-free and cloudy conditions. With the criteria applied, the absolute magnitude of the mean differences between the shipboard measurements and the CERES estimates for the downward shortwave flux were within 2%, with RMS differences less than 6% within each month of CERES–shipboard matchups. The absolute magnitude of the mean differences for the downward longwave flux was less than 2%, with RMS differences less than 5%.
Dependence of Land Surface Albedo on Solar Zenith Angle: Observations and Model Parameterization
Authors: Yang Fanglin , Mitchell Kenneth , Hou Yu-Tai , Dai Yongjiu , Zeng Xubin , Wang Zhuo , Liang Xin-Zhong 
Published: April 2008

AbstractThis study examines the dependence of surface albedo on solar zenith angle (SZA) over snow-free land surfaces using the intensive observations of surface shortwave fluxes made by the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) Program and the National Oceanic and Atmospheric Administration Surface Radiation Budget Network (SURFRAD) in 1997–2005. Results are used to evaluate the National Centers for Environmental Prediction (NCEP) Global Forecast Systems (GFS) parameterization and several new parameterizations derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) products. The influence of clouds on surface albedo and the albedo difference between morning and afternoon observations are also investigated. A new approach is taken to partition the observed upward flux so that the direct-beam and diffuse albedos can be separately computed. The study focused first on the ARM Southern Great Plains Central Facility site. It is found that the diffuse albedo prescribed in the NCEP GFS matched closely with the observations. The direct-beam albedo parameterized in the GFS is largely underestimated at all SZAs. The parameterizations derived from the MODIS product underestimated the direct-beam albedo at large SZAs and slightly overestimated it at small SZAs. Similar results are obtained from the analyses of observations at other stations. It is also found that the morning and afternoon dependencies of direct-beam albedo on SZA differ among the stations. Attempts are made to improve numerical model algorithms that parameterize the direct-beam albedo as a product of the direct-beam albedo at SZA = 60° (or the diffuse albedo), which varies with surface type or geographical location and/or season, and a function that depends only on SZA. A method is presented for computing the direct-beam albedos over these snow-free land points without referring to a particular land-cover classification scheme, which often differs from model to model.
Inclusion of a Drag Approach in the Town Energy Balance (TEB) Scheme: Offline 1D Evaluation in a Street Canyon
Authors: Hamdi R. , Masson V. 
Published: April 2008

Abstract
The Town Energy Balance module bridges the micro- and mesoscale and simulates local-scale urban surface energy balance for use in mesoscale meteorological models. Previous offline evaluations show that this urban module is able to simulate in good behavior road, wall, and roof temperatures and to correctly partition radiation forcing into turbulent and storage heat fluxes. However, to improve prediction of the meteorological fields inside the street canyon, a new version has been developed, following the methodology described in a companion paper by Masson and Seity. It resolves the surface boundary layer inside and above urban canopy by introducing a drag force approach to account for the vertical effects of buildings. This new version is tested offline, with one-dimensional simulation, in a street canyon using atmospheric and radiation data recorded at the top of a 30-m-high tower as the upper boundary conditions. Results are compared with simulations using the original single-layer version of the Town Energy Balance module on one hand and with measurements within and above a street canyon on the other hand. Measurements were obtained during the intensive observation period of the Basel Urban Boundary Layer Experiment. Results show that this new version produces profiles of wind speed, friction velocity, turbulent kinetic energy, turbulent heat flux, and potential temperature that are more consistent with observations than with the single-layer version. Furthermore, this new version can still be easily coupled to mesoscale meteorological models.
Barotropic Regeneration of Upper-Level Synoptic Disturbances in Different Configurations of the Zonal Weather Regime
Authors: Rivière Gwendal 
Published: April 2008

Barotropic dynamics of upper-tropospheric midlatitude disturbances evolving in different configurations of the zonal weather regime (i.e., in different zonal-like large-scale flows) were studied using observational analyses and barotropic model experiments. The contraction stage of upper-level disturbances that follows their elongation stage leads to an increase of eddy kinetic energy that is called the barotropic regeneration process in this text. This barotropic mechanism is studied through notions of barotropic critical regions (BtCRs) and effective deformation that have been introduced in a previous paper. The effective deformation field is equal to the difference between the square of the large-scale deformation magnitude and the square of the large-scale vorticity. Regions where the effective deformation is positive correspond to regions where the large-scale flow tends to strongly stretch synoptic disturbances. A BtCR is an area separating two large-scale regions of positive effective deformation, one located upstream and on the south side of the jet and the other downstream and on the north side. Such a region presents a discontinuity in the orientation of the dilatation axes and is a potential area where the barotropic regeneration process may occur. Winter days presenting a zonal weather regime in the 40-yr ECMWF Re-Analysis dataset are decomposed, via a partitioning algorithm, into different configurations of the effective deformation field at 300 hPa. A six-cluster partition is obtained. Composite maps of the barotropic generation rate for each cluster exhibit a succession of negative and positive values on both sides of the BtCRs. It confirms statistically that the barotropic regeneration mechanism occurs preferentially about BtCRs. Numerical experiments using a forced barotropic model on the sphere are performed. Each experiment consists of adding a synoptic-scale perturbation to one of the zonal-like jet configurations found in observations, which is kept fixed with time. The combined effects of the effective deformation and nonlinearities are shown to be crucial to reproduce the barotropic regeneration process about BtCRs.
The Ocean–Land–Atmosphere Model (OLAM). Part II: Formulation and Tests of the Nonhydrostatic Dynamic Core
Authors: Walko Robert L. , Avissar Roni 
Published: April 2008

Abstract
The dynamic core of the Ocean–Land–Atmosphere Model (OLAM), which is a new global model that is partly based on the Regional Atmospheric Modeling System (RAMS), is described and tested. OLAM adopts many features of its predecessor, but its dynamic core is new and incorporates a global geodesic grid with triangular mesh cells and a finite-volume discretization of the nonhydrostatic compressible Navier–Stokes equations. The spatial discretization of horizontal momentum is based on a C-staggered grid and uses a method that has not been previously applied in atmospheric modeling. The temporal discretization uses a unique form of time splitting that enforces consistency of advecting mass flux among all conservation equations. OLAM grid levels are horizontal, and topography is represented by the shaved-cell method. Aspects of the shaved-cell method that pertain to the OLAM discretization on the triangular mesh are described, and a method of conserving momentum in shaved cells on a C-staggered grid is presented.
The dynamic core was tested in simulations with multiple vertical model levels and significant vertical motion. The tests include an idealized global circulation simulation, a cold density current, and mountain-wave flow over an orographic barrier, all of which are well-known standard benchmark experiments. OLAM gave acceptable results in all tests, demonstrating that its dynamic core produces accurate and robust solutions.
Elevated protein tyrosine phosphatase activity provokes Eph/ephrin-facilitated adhesion of pre-B leukemia cells
Authors: Wimmer-Kleikamp Sabine H. , Nievergall Eva , Gegenbauer Kristina , Adikari Samantha , Mansour Mariam , Yeadon Trina , Boyd Andrew W. , Patani Neill R. , Lackmann Martin 
Published: April 2008

AbstractSignaling by Eph receptors and cell-surface ephrin ligands modulates adhesive cell properties and thereby coordinates cell movement and positioning in normal and oncogenic development. While cell contact–dependent Eph activation frequently leads to cell-cell repulsion, also the diametrically opposite response, cell-cell adhesion, is a probable outcome. However, the molecular principles regulating such disparate functions have remained controversial. We have examined cell-biologic mechanisms underlying this switch by analyzing ephrin-A5–induced cell-morphologic changes of EphA3-positive LK63 pre-B acute lymphoblastic leukemia cells. Their exposure to ephrin-A5 surfaces leads to a rapid conversion from a suspended/nonpolarized to an adherent/polarized cell type, a transition that relies on EphA3 functions operating in the absence of Eph-kinase signaling. Cell morphology change and adhesion of LK63 cells are effectively attenuated by endogenous protein tyrosine phosphatase (PTP) activity, whereby PTP inhibition and productive EphA3-phosphotyrosine signaling reverse the phenotype to nonadherent cells with a condensed cytoskeleton. Our findings suggest that Eph-associated PTP activities not only control receptor phosphorylation levels, but as a result switch the response to ephrin contact from repulsion to adhesion, which may play a role in the pathology of hematopoietic tumors.
The RGS gene loco is essential for male reproductive system differentiation in Drosophila melanogaster
Authors: McGurk Leeanne , Pathirana Stephen , Rothwell Kathleen , Trimbuch Thorsten , Colombini Paolo , Yu Fengwei , Chia William , Bownes Mary 
Published: April 2008

Abstract

Background
The loco gene encodes several different isoforms of a regulator of G-protein signalling. These different isoforms of LOCO are part of a pathway enabling cells to respond to external signals. LOCO is known to be required at various developmental stages including neuroblast division, glial cell formation and oogenesis. Less is known about LOCO and its involvement in male development therefore to gain further insight into the role of LOCO in development we carried out a genetic screen and analysed males with reduced fertility.

Results
We identified a number of lethal loco mutants and four semi-lethal lines, which generate males with reduced fertility. We have identified a fifth loco transcript and show that it is differentially expressed in developing pupae. We have characterised the expression pattern of all loco transcripts during pupal development in the adult testes, both in wild type and loco mutant strains. In addition we also show that there are various G-protein α subunits expressed in the testis all of which may be potential binding partners of LOCO.

Conclusion
We propose that the male sterility in the new loco mutants result from a failure of accurate morphogenesis of the adult reproductive system during metamorphosis, we propose that this is due to a loss of expression of loco c3. Thus, we conclude that specific isoforms of loco are required for the differentiation of the male gonad and genital disc.