bluuebunny/crossref_metadata_2025_split huggingface dataset:
An investigation of the impact of the location and timing of antigen-specific T cell division on airways inflammation
Authors: Hutchison S , Choo-Kang B S W , Gibson V B , Bundick R V , Leishman A J , Brewer J M , McInnes I B , Garside P 
Published: November 2008

SummaryIt is widely accepted that allergic asthma is orchestrated by T helper type 2 lymphocytes specific for inhaled allergen. However, it remains unclear where and when T cell activation and division occurs after allergen challenge, and whether these factors have a significant impact on airways inflammation. We therefore employed a CD4-T cell receptor transgenic adoptive transfer model in conjunction with laser scanning cytometry to characterize the location and timing of T cell division in asthma in vivo. Thus, for the first time we have directly assessed the division of antigen-specific T cells in situ. We found that accumulation of divided antigen-specific T cells in the lungs appeared to occur in two waves. The first very early wave was apparent before dividing T cells could be detected in the lymph node (LN) and coincided with neutrophil influx. The second wave of divided T cells accumulating in lung followed the appearance of these cells in LN and coincided with peak eosinophilia. Furthermore, accumulation of antigen-specific T cells in the draining LN and lung tissue, together with accompanying pathology, was reduced by intervention with the sphingosine 1-phosphate receptor agonist FTY720 2 days after challenge. These findings provide greater insight into the timing and location of antigen-specific T cell division in airways inflammation, indicate that distinct phases and locations of antigen presentation may be associated with different aspects of pathology and that therapeutics targeted against leukocyte migration may be useful in these conditions.
Lagged effects of experimental warming and doubled precipitation on annual and seasonal aboveground biomass production in a tallgrass prairie
Authors: SHERRY REBECCA A. , WENG ENSHENG , ARNONE III JOHN A. , JOHNSON DALE W. , SCHIMEL DAVE S. , VERBURG PAUL S. , WALLACE LINDA L. , LUO YIQI 
Published: November 2008

AbstractGlobal climate change is expected to result in a greater frequency of extreme weather, which can cause lag effects on aboveground net primary production (ANPP). However, our understanding of lag effects is limited. To explore lag effects following extreme weather, we applied four treatments (control, doubled precipitation, 4 °C warming, and warming plus doubled precipitation) for 1 year in a randomized block design and monitored changes in ecosystem processes for 3 years in an old‐field tallgrass prairie in central Oklahoma. Biomass was estimated twice in the pretreatment year, and three times during the treatment and posttreatment years. Total plant biomass was increased by warming in spring of the treatment year and by doubled precipitation in summer. However, double precipitation suppressed fall production. During the following spring, biomass production was significantly suppressed in the formerly warmed plots 2 months after treatments ceased. Nine months after the end of treatments, fall production remained suppressed in double precipitation and warming plus double precipitation treatments. Also, the formerly warmed plots still had a significantly greater proportion of C4 plants, while the warmed plus double precipitation plots retained a high proportion of C3 plants. The lag effects of warming on biomass did not match the temporal patterns of soil nitrogen availability determined by plant root simulator probes, but coincided with warming‐induced decreases in available soil moisture in the deepest layers of soil which recovered to the pretreatment pattern approximately 10 months after the treatments ceased. Analyzing the data with an ecosystem model showed that the lagged temporal patterns of effects of warming and precipitation on biomass can be fully explained by warming‐induced differences in soil moisture. Thus, both the experimental results and modeling analysis indicate that water availability regulates lag effects of warming on biomass production.
Warming and drying suppress microbial activity and carbon cycling in boreal forest soils
Authors: ALLISON STEVEN D. , TRESEDER KATHLEEN K. 
Published: November 2008

AbstractClimate warming is expected to have particularly strong effects on tundra and boreal ecosystems, yet relatively few studies have examined soil responses to temperature change in these systems. We used closed‐top greenhouses to examine the response of soil respiration, nutrient availability, microbial abundance, and active fungal communities to soil warming in an Alaskan boreal forest dominated by mature black spruce. This treatment raised soil temperature by 0.5 °C and also resulted in a 22% decline in soil water content. We hypothesized that microbial abundance and activity would increase with the greenhouse treatment. Instead, we found that bacterial and fungal abundance declined by over 50%, and there was a trend toward lower activity of the chitin‐degrading enzymeN‐acetyl‐glucosaminidase. Soil respiration also declined by up to 50%, but only late in the growing season. These changes were accompanied by significant shifts in the community structure of active fungi, with decreased relative abundance of a dominant Thelephoroid fungus and increased relative abundance of Ascomycetes and Zygomycetes in response to warming. In line with our hypothesis, we found that warming marginally increased soil ammonium and nitrate availability as well as the overall diversity of active fungi. Our results indicate that rising temperatures in northern‐latitude ecosystems may not always cause a positive feedback to the soil carbon cycle, particularly in boreal forests with drier soils. Models of carbon cycle‐climate feedbacks could increase their predictive power by incorporating heterogeneity in soil properties and microbial communities across the boreal zone.
On linking multiyear biometric measurements of tree growth with eddy covariance‐based net ecosystem production
Authors: OHTSUKA TOSHIYUKI , SAIGUSA NOBUKO , KOIZUMI HIROSHI 
Published: November 2008

AbstractAnnual measurements of the diameter growth and litter fall of trees began in 1998 using a 1.0 ha permanent plot beneath a flux tower at the Takayama flux site, central Japan. This opened up an opportunity for studies that compare the interannual variability in tree growth with eddy covariance‐based net ecosystem production (NEP). A possible link between multiyear biometric‐based net primary production (NPP) and eddy covariance‐based NEP was investigated to determine the contribution of autotrophic production and heterotrophic respiration (HR) to the interannual variability of NEP in deciduous forest ecosystems. We also defined the NEP* as the measurable organic matter stored in an ecosystem during the interval in which soil respiration (SR) measurements were taken. The difference of biometric‐based NEP* from eddy covariance‐based NEP within a given year varied between 55% and 105%. Woody tissue NPP (stems and coarse roots) varied markedly from 0.88 to 1.96 Mg C ha−1 yr−1 during the 8‐year study period (1999–2006). Annual woody tissue NPP was positively correlated with eddy covariance‐based NEP (r2=0.52, P<0.05). However, neither foliage NPP (r2=0.03) nor HR (r2=0.06) were correlated with eddy covariance‐based NEP. Therefore, it was hypothesized that interannual variability in the ecosystem carbon exchange was directly responsible for much of the interannual variation in autotrophic production, especially carbon accumulation in the woody components of the ecosystem. Moreover, similar interannual variations of biometric‐based NEP* and eddy covariance‐based NEP with small variations in SR and foliage NPP suggest a constant net accumulation of carbon in nonliving pools at the Takayama site.
Ecosystem feedbacks and cascade processes: understanding their role in the responses of Arctic and alpine ecosystems to environmental change
Authors: WOOKEY PHILIP A. , AERTS RIEN , BARDGETT RICHARD D. , BAPTIST FLORENCE , BRÅTHEN KARI ANNE , CORNELISSEN JOHANNES H. C. , GOUGH LAURA , HARTLEY IAIN P. , HOPKINS DAVID W. , LAVOREL SANDRA , SHAVER GAIUS R. 
Published: November 2008

AbstractGlobal environmental change, related to climate change and the deposition of airborne N‐containing contaminants, has already resulted in shifts in plant community composition among plant functional types in Arctic and temperate alpine regions. In this paper, we review how key ecosystem processes will be altered by these transformations, the complex biological cascades and feedbacks that might result, and some of the potential broader consequences for the earth system. Firstly, we consider how patterns of growth and allocation, and nutrient uptake, will be altered by the shifts in plant dominance. The ways in which these changes may disproportionately affect the consumer communities, and rates of decomposition, are then discussed. We show that the occurrence of a broad spectrum of plant growth forms in these regions (from cryptogams to deciduous and evergreen dwarf shrubs, graminoids and forbs), together with hypothesized low functional redundancy, will mean that shifts in plant dominance result in a complex series of biotic cascades, couplings and feedbacks which are supplemental to the direct responses of ecosystem components to the primary global change drivers. The nature of these complex interactions is highlighted using the example of the climate‐driven increase in shrub cover in low‐Arctic tundra, and the contrasting transformations in plant functional composition in mid‐latitude alpine systems. Finally, the potential effects of the transformations on ecosystem properties and processes that link with the earth system are reviewed. We conclude that the effects of global change on these ecosystems, and potential climate‐change feedbacks, cannot be predicted from simple empirical relationships between processes and driving variables. Rather, the effects of changes in species distributions and dominances on key ecosystem processes and properties must also be considered, based upon best estimates of the trajectories of key transformations, their magnitude and rates of change.
Response of isoprene emission to ambient CO2 changes and implications for global budgets
Authors: HEALD COLETTE L. , WILKINSON MICHAEL J. , MONSON RUSSELL K. , ALO CLEMENT A. , WANG GUILING , GUENTHER ALEX 
Published: November 2008

AbstractWe explore the potential role of atmospheric carbon dioxide (CO2) on isoprene emissions using a global coupled land–atmosphere model [Community Atmospheric Model–Community Land Model (CAM–CLM)] for recent (year 2000, 365 ppm CO2) and future (year 2100, 717 ppm CO2) conditions. We incorporate an empirical model of observed isoprene emissions response to both ambient CO2 concentrations in the long‐term growth environment and short‐term changes in intercellular CO2 concentrations into the MEGAN biogenic emission model embedded within the CLM. Accounting for CO2 inhibition has little impact on predictions of present‐day global isoprene emission (increase from 508 to 523 Tg C yr−1). However, the large increases in future isoprene emissions typically predicted in models, which are due to a projected warmer climate, are entirely offset by including the CO2 effects. Projected global isoprene emissions in 2100 drop from 696 to 479 Tg C yr−1 when this effect is included, maintaining future isoprene sources at levels similar to present day. The isoprene emission response to CO2 is dominated by the long‐term growth environment effect, with modulations of 10% or less due to the variability in intercellular CO2 concentration. As a result, perturbations to isoprene emissions associated with changes in ambient CO2 are largely aseasonal, with little diurnal variability. Future isoprene emissions increase by more than a factor of two in 2100 (to 1242 Tg C yr−1) when projected changes in vegetation distribution and leaf area density are included. Changing land cover and the role of nutrient limitation on CO2 fertilization therefore remain the largest source of uncertainty in isoprene emission prediction. Although future projections suggest a compensatory balance between the effects of temperature and CO2 on isoprene emission, the enhancement of isoprene emission due to lower ambient CO2 concentrations did not compensate for the effect of cooler temperatures over the last 400 thousand years of the geologic record (including the Last Glacial Maximum).
Leaf isoprene emission rate as a function of atmospheric CO2 concentration
Authors: WILKINSON MICHAEL J. , MONSON RUSSELL K. , TRAHAN NICOLE , LEE STANFIELD , BROWN ERIN , JACKSON ROBERT B. , POLLEY H. WAYNE , FAY PHILIP A. , FALL RAY 
Published: November 2008

AbstractThere is considerable interest in modeling isoprene emissions from terrestrial vegetation, because these emissions exert a principal control over the oxidative capacity of the troposphere. We used a unique field experiment that employs a continuous gradient in CO2 concentration from 240 to 520 ppmv to demonstrate that isoprene emissions in Eucalyptus globulus were enhanced at the lowest CO2 concentration, which was similar to the estimated CO2 concentrations during the last Glacial Maximum, compared with 380 ppmv, the current CO2 concentration. Leaves of Liquidambar styraciflua did not show an increase in isoprene emission at the lowest CO2 concentration. However, isoprene emission rates from both species were lower for trees grown at 520 ppmv CO2 compared with trees grown at 380 ppmv CO2. When grown in environmentally controlled chambers, trees of Populus deltoides and Populus tremuloides exhibited a 30–40% reduction in isoprene emission rate when grown at 800 ppmv CO2, compared with 400 ppmv CO2. P. tremuloides exhibited a 33% reduction when grown at 1200 ppmv CO2, compared with 600 ppmv CO2. We used current models of leaf isoprene emission to demonstrate that significant errors occur if the CO2 inhibition of isoprene is not taken into account. In order to alleviate these errors, we present a new model of isoprene emission that describes its response to changes in atmospheric CO2 concentration. The model logic is based on assumed competition between cytosolic and chloroplastic processes for pyruvate, one of the principal substrates of isoprene biosynthesis.
Keeping up with early springs: rapid range expansion in an avian herbivore incurs a mismatch between reproductive timing and food supply
Authors: VAN DER JEUGD HENK P. , EICHHORN GÖTZ , LITVIN KONSTANTIN E. , STAHL JULIA , LARSSON KJELL , VAN DER GRAAF ALEXANDRA J. , DRENT RUDI H. 
Published: November 2008

AbstractWithin three decades, the barnacle goose population wintering on the European mainland has dramatically increased in numbers and extended its breeding range. The expansion has occurred both within the Arctic as well as by the colonization of temperate areas. Studies of performance of individuals in expanding populations provide information on how well species can adapt to novel environments and global warming. We, therefore, studied the availability of high quality food as well as timing of reproduction, wing moult, fledgling production and postfledging survival of individually marked geese in three recently established populations: one Arctic (Barents Sea) and two temperate (Baltic, North Sea). In the Barents Sea population, timing of hatching was synchronized with the peak in food availability and there was strong stabilizing selection. Although birds in the Baltic and North Sea populations bred 6–7 weeks earlier than Arctic birds, timing of hatching was late in relation to the peak in food availability, and there was moderate to strong directional selection for early breeding. In the Baltic, absolute timing of egg laying advanced considerably over the 20‐year study period, but advanced little relative to spring phenology, and directional selection on lay date increased over time. Wing moult of adults started only 2–4 weeks earlier in the temperate populations than in the Arctic. Synchronization between fledging of young and end of wing moult decreased in the temperate populations. Arctic‐breeding geese may gradually accumulate body stores from the food they encounter during spring migration, which allows them to breed relatively early and their young to use the peak of the Arctic food resources. By contrast, temperate‐breeding birds are not able to acquire adequate body stores from local resources early enough, that is before the quality of food for their young starts to decrease. When global temperatures continue to rise, Arctic‐breeding barnacle geese might encounter similar problems.
Soil organic matter dynamics during 80 years of reforestation of tropical pastures
Authors: MARIN‐SPIOTTA ERIKA , SILVER WHENDEE L. , SWANSTON CHRISTOPHER W. , OSTERTAG REBECCA 
Published: November 2008

AbstractOur research takes advantage of a historical trend in natural reforestation of abandoned tropical pastures to examine changes in soil carbon (C) during 80 years of secondary forest regrowth. We combined a chronosequence approach with differences in the natural abundance of 13C between C3 (forest) and C4 (pasture) plants to estimate turnover times of C in the bulk soil and in density fractions. Overall, gains in secondary forest C were compensated for by the loss of residual pasture‐derived soil C, resulting in no net change in bulk soil C stocks down to 1 m depth over the chronosequence. The free light fraction (LF), representing physically unprotected particulate organic matter, was most sensitive to land‐use change. Reforestation replenished C in the free LF that had been depleted during conversion to pastures. Turnover times varied with model choice, but in general, soil C cycling rates were rapid for the 0–10 cm depth, with even the heavy fraction (HF) containing C cycling in decadal time scales. Turnover times of C in the free LF from the 0–10 cm depth were shorter than for the occluded and HFs, highlighting the importance of physical location in the soil matrix for residence time in the soil. The majority of the soil C pool (82±21%) was recovered in the mineral‐associated density fraction. Carbon‐to‐nitrogen ratios and differences in natural abundance 15N of soil organic matter (SOM) showed an increasing degree of decomposition across density fractions with increasing mineral association. Our data show that the physical distribution of C in the soil has a large impact on soil C turnover and the ability of soils to maintain SOM stocks during land‐use and land‐cover change.
Copepod life cycle adaptations and success in response to phytoplankton spring bloom phenology
Authors: SEEBENS HANNO , EINSLE ULRICH , STRAILE DIETMAR 
Published: November 2008

AbstractIn a seasonal environment, the timing of reproduction is usually scheduled to maximize the survival of offspring. Within deep water bodies, the phytoplankton spring bloom provides a short time window of high food quantity and quality for herbivores. The onset of algal bloom development, however, varies strongly from year to year due to interannual variability in meteorological conditions. Furthermore, the onset is predicted to change with global warming. Here, we use a long‐term dataset to study (a) how a cyclopoid copepod, Cyclops vicinus, is dealing with the large variability in phytoplankton bloom phenology, and (b) if bloom phenology has an influence on offspring numbers. C. vicinus performed a two‐phase dormancy, that is, the actual diapause of fourth copepodid stages at the lake bottom is followed by a delay in maturation, that is, a quiescence, within the fifth copepodid stage until the start of the spring bloom. This strategy seems to guarantee a high temporal match of the food requirements for successful offspring development, especially through the highly vulnerable naupliar stages, with the phytoplankton spring bloom. However, despite this match with food availability in all study years, offspring numbers, that is, offspring survival rates were higher in years with an early start of the phytoplankton bloom. In addition, the phenology of copepod development suggested that also within study years, early offspring seems to have lower mortality rates than late produced offspring. We suggest that this is due to a longer predator‐free time period and/or reduced time stress for development. Hence, within the present climate variability, the copepod benefited from warmer spring temperatures resulting in an earlier phytoplankton spring bloom. Time will show if the copepod's strategy is flexible enough to cope with future warming.
Response of ecosystem carbon exchange to warming and nitrogen addition during two hydrologically contrasting growing seasons in a temperate steppe
Authors: XIA JIANYANG , NIU SHULI , WAN SHIQIANG 
Published: November 2008

AbstractA large remaining source of uncertainty in global model predictions of future climate is how ecosystem carbon (C) cycle feedbacks to climate change. We conducted a field manipulative experiment of warming and nitrogen (N) addition in a temperate steppe in northern China during two contrasting hydrological growing seasons in 2006 [wet with total precipitation 11.2% above the long‐term mean (348 mm)] and 2007 (dry with total precipitation 46.7% below the long‐term mean). Irrespective of strong intra‐ and interannual variations in ecosystem C fluxes, responses of ecosystem C fluxes to warming and N addition did not change between the two growing seasons, suggesting independence of warming and N responses of net ecosystem C exchange (NEE) upon hydrological variations in the temperate steppe. Warming had no effect on NEE or its two components, gross ecosystem productivity (GEP) and ecosystem respiration (ER), whereas N addition stimulated GEP but did not affect ER, leading to positive responses of NEE. Similar responses of NEE between the two growing seasons were due to changes in both biotic and abiotic factors and their impacts on ER and GEP. In the wet growing season, NEE was positively correlated with soil moisture and forb biomass. Negative effects of warming‐induced water depletion could be ameliorated by higher forb biomass in the warmed plots. N addition increased forb biomass but did not affect soil moisture, leading to positive effect on NEE. In the dry growing season, NEE showed positive dependence on grass biomass but negative dependence on forb biomass. No changes in NEE in response to warming could result from water limitation on both GEP and ER as well as little responses of either grass or forb biomass. N addition stimulated grass biomass but reduced forb biomass, leading to the increase in NEE. Our findings highlight the importance of changes in abiotic (soil moisture, N availability) and biotic (growth of different plant functional types) in mediating the responses of NEE to climatic warming and N enrichment in the semiarid temperate steppe in northern China.