bluuebunny/crossref_metadata_2025_split huggingface dataset:
Greenhouse gas emissions, carbon stocks and wheat productivity following biochar, compost and vermicompost amendments: comparison of non-saline and salt-affected soils
Authors: Farooqi Zia Ur Rahman , Qadir Ayesha Abdul , Khalid Sehrish , Murtaza Ghulam , Ashraf Muhammad Nadeem , Shafeeq-ur-Rahman  , Javed Wasim , Waqas Muhammad Ahmed , Xu Minggang 
Published: April 2024

AbstractUnderstanding the impact of greenhouse gas (GHG) emissions and carbon stock is crucial for effective climate change assessment and agroecosystem management. However, little is known about the effects of organic amendments on GHG emissions and dynamic changes in carbon stocks in salt-affected soils. We conducted a pot experiment with four treatments including control (only fertilizers addition), biochar, vermicompost, and compost on non-saline and salt-affected soils, with the application on a carbon equivalent basis under wheat crop production. Our results revealed that the addition of vermicompost significantly increased soil organic carbon content by 18% in non-saline soil and 52% in salt-affected soil compared to the control leading to improvements in crop productivity i.e., plant dry biomass production by 57% in non-saline soil with vermicompost, while 56% with the same treatment in salt-affected soil. The grain yield was also noted 44 and 50% more with vermicompost treatment in non-saline and salt-affected soil, respectively. Chlorophyll contents were observed maximum with vermicompost in non-saline (24%), and salt-affected soils (22%) with same treatments. Photosynthetic rate (47% and 53%), stomatal conductance (60% and 12%), and relative water contents (38% and 27%) were also noted maximum with the same treatment in non-saline and salt-affected soils, respectively. However, the highest carbon dioxide emissions were observed in vermicompost- and compost-treated soils, leading to an increase in emissions of 46% in non-saline soil and 74% in salt-affected soil compared to the control. The compost treatment resulted in the highest nitrous oxide emissions, with an increase of 57% in non-saline soil and 62% in salt-affected soil compared to the control. In saline and non-saline soils treated with vermicompost, the global warming potential was recorded as 267% and 81% more than the control, respectively. All treatments, except biochar in non-saline soil, showed increased net GHG emissions due to organic amendment application. However, biochar reduced net emissions by 12% in non-saline soil. The application of organic amendments increased soil organic carbon content and crop yield in both non-saline and salt-affected soils. In conclusion, biochar is most effective among all tested organic amendments at increasing soil organic carbon content in both non-saline and salt-affected soils, which could have potential benefits for soil health and crop production.
The impact of a chemical reaction on the heat and mass transfer mechanisms in a dissipative and radiative nanofluid flow over a nonlinear stretching sheet
Authors: Abbas W. , Megahed Ahmed M. , Fares Eman 
Published: April 2024

AbstractThis paper presents a numerical investigation of the flow of a non-Newtonian tangent hyperbolic nanofluid over a nonlinearly stretched surface, taking into account factors such as thermal radiation, prescribed surface temperature, and a chemical reaction mechanism. Furthermore, the analysis includes the consideration of both viscous dissipation and the influence of a magnetic field within a Darcy porous medium. A mathematical framework for addressing the issue, rooted in the principles of conserving momentum, energy, and mass. The MATHEMATICA tools were employed to apply the shooting technique in order to solve the modeled equations describing the temperature, velocity, and concentration fields of the proposed physical system. Graphs are used to illustrate how certain key parameters affect the profiles of concentration, velocity, and temperature. Data tables are utilized to display information pertaining to the local Nusselt number, local Sherwood number, and local skin friction coefficient. The present results have been confirmed through a comparison with previously published findings. This research holds significant importance as it focuses on the extensive utilization of tangent hyperbolic nanofluids in cooling electronic components that produce substantial heat during their operation. The observed pattern indicates that as the local Weisbsenberg number, magnetic number, local porous parameter, and power law index increase, there is a reduction in the boundary layer thickness. Conversely, in the instances of concentration and temperature distributions, an escalation in these parameters leads to an expansion of the boundary layer thickness.
Clinically significant changes in genes and variants associated with epilepsy over time: implications for re-analysis
Authors: Robertson Alan J. , Tran Khoa A. , Bennett Carmen , Sullivan Clair , Stark Zornitza , Vadlamudi Lata , Waddell Nicola 
Published: April 2024

AbstractDespite the significant advances in understanding the genetic architecture of epilepsy, many patients do not receive a molecular diagnosis after genomic testing. Re-analysing existing genomic data has emerged as a potent method to increase diagnostic yields—providing the benefits of genomic-enabled medicine to more individuals afflicted with a range of different conditions. The primary drivers for these new diagnoses are the discovery of novel gene-disease and variants-disease relationships; however, most decisions to trigger re-analysis are based on the passage of time rather than the accumulation of new knowledge. To explore how our understanding of a specific condition changes and how this impacts re-analysis of genomic data from epilepsy patients, we developed Vigelint. This approach combines the information from PanelApp and ClinVar to characterise how the clinically relevant genes and causative variants available to laboratories change over time, and this approach to five clinical-grade epilepsy panels. Applying the Vigelint pipeline to these panels revealed highly variable patterns in new, clinically relevant knowledge becoming publicly available. This variability indicates that a more dynamic approach to re-analysis may benefit the diagnosis and treatment of epilepsy patients. Moreover, this work suggests that Vigelint can provide empirical data to guide more nuanced, condition-specific approaches to re-analysis.
Spectral band selection and ANIMR-GAN for high-performance multispectral coal gangue classification
Authors: Wang Qingya , Hua Huaitian , Tao Liangliang , Liang Yage , Deng Xiaozheng , Yu Fen 
Published: April 2024

AbstractLow-energy and efficient coal gangue sorting is crucial for environmental protection. Multispectral imaging (MSI) has emerged as a promising technology in this domain. This work addresses the challenge of low resolution and poor recognition performance in underground MSI equipment. We propose an attention-based multi-level residual network (ANIMR) within a super-resolution reconstruction model (ANIMR-GAN) inspired by CycleGAN. This model incorporates improvements to the discriminator and loss function. We trained the model on 600 coal and gangue MSI samples and validated it on an independent set of 120 samples. The ANIMR-GAN, combined with a random forest classifier, achieved a maximum accuracy of 97.78% and an average accuracy of 93.72%. Furthermore, the study identifies the 959.37 nm band as optimal for coal and gangue classification. Compared to existing super-resolution methods, ANIMR-GAN offers advantages, paving the way for intelligent and efficient coal gangue sorting, ultimately promoting advancements in sustainable mineral processing.
Light squeezing enhancement by coupling nonlinear optical cavities
Authors: Jabri H. , Eleuch H. 
Published: April 2024

AbstractIn this paper, we explore the squeezing effect generated by two coupled optical cavities. Each cavity contains a second-order nonlinear material and coherently pumped by a laser. Our results show that light intensity is strongly improved due to the presence of the nonlinearities and mainly depends on the detunings between external laser frequencies and cavity modes. More interestingly, the proposed scheme could enhance light squeezing for moderate coupling between cavities : the squeezing generated by one cavity is enhanced by the other one. For resonant interaction, highest squeezing effect is obtained near resonance. When fields are non resonant, squeezing increases near resonance of the considered cavity, but decreases for large detunings relative to the second cavity. Further, when the dissipation rate of the second cavity is smaller than the first, the squeezing could be improved, attaining nearly the perfect squeezing. While the temperature elevation has a negative impact overall on the nonclassical light, squeezing shows an appreciable resistance against thermal baths for appropriate parameter sets.
Innovative numerical modeling for predicting soil relaxation in the design of twin circular culverts
Authors: Shiau Jim , Nguyen Tan , Sams Mathew , Bhattacharya Paramita 
Published: April 2024

AbstractThis study presents a finite difference model for analyzing ground stability and settlement of twin circular culverts in undrained clay. The model is verified through simulations of soil movement and relaxation around a tunnel-boring machine's shield. Stability numbers and ground settlement are evaluated across various culvert geometries and soil ratios and compared to rigorous solutions and previous models. The settlement data obtained is used to determine inflection point parameters for practical culvert design, considering dimensionless ratios. The findings highlight the importance of precise design methodologies that consider soil properties and geometry. The finite difference model proves to be a valuable tool in culvert design, providing accurate analysis of stability and settlement characteristics. The presented design figures and regression equations serve as practical tools for engineers in designing stable twin circular culverts in undrained clay. The study emphasizes the need to carefully consider soil properties and geometry for successful culvert design. In conclusion, the finite difference model offers insights into ground stability and settlement of twin circular culverts. The presented design figures and regression equations support engineers in making informed design decisions, ensuring the stability and long-term performance of culverts in undrained clay conditions.
Phylogeny and biogeography of the wingless orthopteran family Rhaphidophoridae
Authors: Kim Do-Yoon , Kim Sangil , Song Hojun , Shin Seunggwan 
Published: April 2024

AbstractCave crickets (Rhaphidophoridae) are insects of an ancient and wingless lineage within Orthoptera that are distributed worldwide except in Antarctica, and each subfamily has a high level of endemicity. Here, we show the comprehensive phylogeny of cave crickets using multi-gene datasets from mitochondrial and nuclear loci, including all extant subfamilies for the first time. We reveal phylogenetic relationships between subfamilies, including the sister relationship between Anoplophilinae and Gammarotettiginae, based on which we suggest new synapomorphies. Through biogeographic analyses based on divergence time estimations and ancestral range reconstruction, we propose novel hypotheses regarding the biogeographic history of cave crickets. We suggest that Gammarotettiginae in California originated from the Asian lineage when Asia and the Americas were connected by the Bering land bridge, and the opening of the western interior seaway affected the division of Ceuthophilinae from Tropidischiinae in North America. We estimate that Rhaphidophoridae originated at 138 Mya throughout Pangea. We further hypothesize that the loss of wings in Rhaphidophoridae could be the result of their adaptation to low temperatures in the Mesozoic era.
Deletion of podocyte Rho-associated, coiled-coil-containing protein kinase 2 protects mice from focal segmental glomerulosclerosis
Authors: Matoba Keiichiro , Nagai Yosuke , Sekiguchi Kensuke , Ohashi Shinji , Mitsuyoshi Etsuko , Shimoda Masayuki , Tachibana Toshiaki , Kawanami Daiji , Yokota Tamotsu , Utsunomiya Kazunori , Nishimura Rimei 
Published: April 2024

AbstractFocal segmental glomerulosclerosis (FSGS) shares podocyte damage as an essential pathological finding. Several mechanisms underlying podocyte injury have been proposed, but many important questions remain. Rho-associated, coiled-coil-containing protein kinase 2 (ROCK2) is a serine/threonine kinase responsible for a wide array of cellular functions. We found that ROCK2 is activated in podocytes of adriamycin (ADR)-induced FSGS mice and cultured podocytes stimulated with ADR. Conditional knockout mice in which the ROCK2 gene was selectively disrupted in podocytes (PR2KO) were resistant to albuminuria, glomerular sclerosis, and podocyte damage induced by ADR injection. In addition, pharmacological intervention for ROCK2 significantly ameliorated podocyte loss and kidney sclerosis in a murine model of FSGS by abrogating profibrotic factors. RNA sequencing of podocytes treated with a ROCK2 inhibitor proved that ROCK2 is a cyclic nucleotide signaling pathway regulator. Our study highlights the potential utility of ROCK2 inhibition as a therapeutic option for FSGS.
Infrared colours and bolometric corrections of SiO masing stars in the inner Milky Way
Authors: Messineo Maria 
Published: April 2024

Aims. We analysed a sample of SiO-masing late-type stars located in the inner Galaxy with the goal of setting better constraints on their obscuration.
Methods. This reference sample has allowed us to define mathematical relations between their dereddened infrared colours and the observed colours (e.g. Ks-[8], Ks-[24]).
Results. The derived equations define a property (the locus) of these late-type stars. Therefore, they enable us to derive the interstellar extinction. With estimated spectral types, it is possible to decompose the total extinction in the two components (interstellar and envelope extinction).
Conclusions. These relations are useful for classifying extremely obscured late-type stars located in the inner Galaxy. Estimating the two extinction components can be performed on an individual late-type star, independently of its surroundings and even when few mid-infrared measurements are available.
Fine structure in the Sigma Orionis cluster revealed by Gaia DR3
Authors: Žerjal M. , Martín E. L. , Pérez-Garrido A. 
Published: April 2024

Context. Sigma Orionis is an open cluster in the nearest giant star formation site – Orion. Its youth (3−5 Myr), low reddening, and relative vicinity make it an important benchmark cluster to study stellar and substellar formation and evolution.
Aims. Young star-forming sites are complex and hierarchical. Precision astrometry from Gaia DR3 enables the exploration of their fine structure.
Methods. We used the modified convergent point technique to kinematically re-evaluate the members in the Sigma Orionis cluster and its vicinity.
Results. We present clear evidence for three kinematically distinct groups in the Sigma Orionis region. The second group, the RV Orionis association, is adjacent to the Sigma Orionis cluster and is composed only of low-mass stars. The third group, the Flame association, whose age is comparable to that of Sigma Orionis, overlaps with the younger NGC 2024 in the Flame Nebula. In total, we have discovered 105 members of this complex not previously found in the literature (82 in Sigma Orionis, 19 in the Flame association, and 4 in the RV Orionis association).
Polarimetric differential imaging with VLT/NACO
Authors: de Regt S. , Ginski C. , Kenworthy M. A. , Caceres C. , Garufi A. , Gledhill T. M. , Hales A. S. , Huelamo N. , Kóspál Á. , Millar-Blanchaer M. A. , Pérez S. , Schreiber M. R. 
Published: April 2024

Context. The observed diversity of exoplanets can possibly be traced back to the planet formation processes. Planet-disk interactions induce sub-structures in the circumstellar disk that can be revealed via scattered light observations. However, a high-contrast imaging technique such as polarimetric differential imaging (PDI) must first be applied to suppress the stellar diffraction halo.
Aims. In this work we present the PDI PiPelIne for NACO data (PIPPIN), which reduces the archival polarimetric observations made with the NACO instrument at the Very Large Telescope. Prior to this work, such a comprehensive pipeline to reduce polarimetric NACO data did not exist. We identify a total of 243 datasets of 57 potentially young stellar objects observed before NACO’s decommissioning.
Methods. The PIPPIN pipeline applies various levels of instrumental polarisation correction and is capable of reducing multiple observing setups, including half-wave plate or de-rotator usage and wire-grid observations. A novel template-matching method is applied to assess the detection significance of polarised signals in the reduced data.
Results. In 22 of the 57 observed targets, we detect polarised light resulting from a scattering of circumstellar dust. The detections exhibit a collection of known sub-structures, including rings, gaps, spirals, shadows, and in- or outflows of material. Since NACO was equipped with a near-infrared wavefront sensor, it made unique polarimetric observations of a number of embedded protostars. This is the first time detections of the Class I objects Elia 2-21 and YLW 16A have been published. Alongside the outlined PIPPIN pipeline, we publish an archive of the reduced data products, thereby improving the accessibility of these data for future studies.
FINKER: Frequency Identification through Nonparametric KErnel Regression in astronomical time series
Authors: Stoppa F. , Johnston C. , Cator E. , Nelemans G. , Groot P. J. 
Published: April 2024

Context. Optimal frequency identification in astronomical datasets is crucial for variable star studies, exoplanet detection, and astero-seismology. Traditional period-finding methods often rely on specific parametric assumptions, employ binning procedures, or overlook the regression nature of the problem, limiting their applicability and precision.
Aims. We introduce a universal- nonparametric kernel regression method for optimal frequency determination that is generalizable, efficient, and robust across various astronomical data types.
Methods. FINKER uses nonparametric kernel regression on folded datasets at different frequencies, selecting the optimal frequency by minimising squared residuals. This technique inherently incorporates a weighting system that accounts for measurement uncertainties and facilitates multi-band data analysis. We evaluated our method’s performance across a range of frequencies pertinent to diverse data types and compared it with an established period-finding algorithm, conditional entropy.
Results. The method demonstrates superior performance in accuracy and robustness compared to existing algorithms, requiring fewer observations to reliably identify significant frequencies. It exhibits resilience against noise and adapts well to datasets with varying complexity.
JWST Observations of Young protoStars (JOYS)
Authors: Tychoniec Łukasz , van Gelder Martijn L. , van Dishoeck Ewine F. , Francis Logan , Rocha Will R. M. , Caratti o Garatti Alessio , Beuther Henrik , Gieser Caroline , Justtanont Kay , Linnartz Harold , Le Gouellec Valentin J. M. , Perotti Giulia , Devaraj Rangaswamy , Tabone Benoît , Ray Thomas P. , Brunken Nashanty G. C. , Chen Yuan , Kavanagh Patrick J. , Klaassen Pamela , Slavicinska Katerina , Güdel Manuel , Östlin Goran 
Published: April 2024

Context. Accretion and ejection dictate the outcomes of star and planet formation processes. The mid-infrared (MIR) wavelength range offers key tracers of processes that have been difficult to detect and spatially resolve in protostars until now.
Aims. We aim to characterize the interplay between accretion and ejection in the low-mass Class I protobinary system TMC1, comprising two young stellar objects: TMC1-W and TMC1-E at a 85 au separation.
Methods. Using the James Webb Space Telescope (JWST) Mid-Infrared Instrument (MIRI) observations in 5–28 μm range, we measured the intensities of emission lines of H2, atoms, and ions, for instance, the [Fe II] and [Ne II], and HI recombination lines. We analyzed the spatial distribution of the different species using the MIRI Medium Resolution Spectrometer (MRS) capabilities to spatially resolve emission at 0″​​.2–0″​​.7 scales. we compared these results with the corresponding Atacama Large Millimeter/submillimeter Array (ALMA) maps tracing cold gas and dust.
Results. We detected H2 outflow coming from TMC1-E, with no significant H2 emission from TMC1-W. The H2 emission from TMC1-E outflow appears narrow and extends to wider opening angles with decreasing Eup from S(8) to S(1) rotational transitions, indicating the disk wind as its origin. The outflow from TMC1-E protostar shows spatially extended emission lines of [Ne II], [Ne III], [Ar II], and [Ar III], with their line ratios consistent with UV radiation as a source of ionization. With ALMA, we detected an accretion streamer infalling from > 1000 au scales onto the TMC1-E component. The TMC1-W protostar powers a collimated jet, detected with [Fe II] and [Ni II], making it consistent with energetic flow. A much weaker ionized jet is observed from TMC1-E, and both jets appear strikingly parallel to each other, indicating that the disks are co-planar. TMC1-W is associated with strong emission from hydrogen recombination lines, tracing the accretion onto the young star.
Conclusions. MIRI-MRS observations provide an unprecedented view of protostellar accretion and ejection processes on 20 au scales. Observations of a binary Class I protostellar system show that the two processes are clearly intertwined, with accretion from the envelope onto the disk influencing a wide-angle wind ejected on disk scales. Finally, the accretion from the protostellar disk onto the protostar is associated with the source launching a collimated high-velocity jet within the innermost regions of the disk.