bluuebunny/crossref_metadata_2025_split huggingface dataset:
Distinguishing Between Insolation‐Driven and Phase‐Locked 100‐Kyr Ice Age Scenarios Using Example Models
Authors: Koepnick Kirstin , Tziperman Eli 
Published: March 2024

AbstractGlacial‐interglacial oscillations exhibit a periodicity of approximately 100 Kyr during the late Pleistocene. Insolation variations are understood to play a vital role in these ice ages, yet their exact effect is still unknown; the 100 Kyr ice ages may be explained in two different ways. They could be purely insolation‐driven, such that ice ages are a consequence of insolation variations and would not have existed without these variations. Or, ice ages may be self‐sustained oscillations, where they would have existed even without insolation variations. We develop several observable measures that are used to differentiate between the two scenarios and can help to determine which one is more likely based on the observed proxy record. We demonstrate these analyses using two representative models. First, we find that the self‐sustained model best fits the ice volume proxy record for the full 800‐Kyr time period. Next, the same model also shows a 100 Kyr peak consistent with observations, yet the insolation‐driven model exhibits a dominant 400 Kyr spectral peak inconsistent with observations. Our third measure indicates that midpoints in ice volume during terminations do not always occur during the same phase of insolation in both observations and the self‐sustained scenario, whereas they do in the insolation‐driven scenario. While some of these results suggest that the self‐sustained ice ages are more consistent with the observed record, they rely on simple representations of the two scenarios. To draw robust conclusions, a broader class of models should be tested using this method of producing observable differences.
Downstream Nutrient Concentrations Depend on Watershed Inputs More Than Reservoir Releases in a Highly Engineered Watershed
Authors: Montefiore L. R. , Kaplan D. , Phlips E. J. , Milbrandt E. C. , Arias M. E. , Morrison E. , Nelson N. G. 
Published: March 2024

AbstractIn this study, we characterized the impact of regulatory water releases relative to watershed inputs on the quality of receiving waters to identify if and how managed releases could be scheduled to mitigate nutrient export and downstream water quality impairment. We specifically investigated freshwater flow partitioning to the Caloosahatchee River and Estuary (CRE) from a large managed lake, Lake Okeechobee, and the CRE's upstream watershed, the C‐43 basin, in southwest Florida (USA). A water balance was developed to identify dominant freshwater inflow sources (i.e., Lake Okeechobee vs. watershed inputs) over time. From the water balance, analyses of historical trends were performed to detect changes in freshwater inflow contributions to the CRE. Further, seasonal and annual concentration variations and long‐term concentration‐discharge (C‐Q) relationships were analyzed to better understand biogeochemical and hydrological processes in the system in relation to freshwater source. Since 1966, we found the duration and magnitude of flows from the C‐43 basin were higher than those from Lake Okeechobee releases. However, recent increases in the annual water volume and proportion of inflow coming from Lake Okeechobee to the CRE were observed. The C‐Q analysis revealed that nitrate and ammonium concentrations in the CRE were responsive to changes in discharge, while total phosphorus and orthophosphate concentrations were chemostatic. While modifications to the Lake Okeechobee operation schedule could potentially mitigate downstream inorganic nitrogen loading, this potential is limited by complex, seasonal C‐Q relationships and confounding effects from surrounding watersheds.
Winter/Spring Runoff Is Earlier, More Protracted, and Increasing in Volume in the Laurentian Great Lakes Basin
Authors: Hrycik Allison R. , Isles Peter D. F. , Pierson Donald C. , Stockwell Jason D. 
Published: March 2024

AbstractWinter/spring runoff has changed in streams worldwide due to climate change, particularly in temperate areas where winter/spring streamflow depends on snowmelt. Such changes potentially affect receiving waters through altered nutrient loading and mixing patterns. The Laurentian Great Lakes are an important freshwater resource and have experienced a myriad of impacts due to climate change. We analyzed 70 years of stream gauge data in the Great Lakes Basin to test for changes in timing, duration, and amount of winter/spring runoff during the period 1950–2019. We found strong evidence for earlier runoff in each of the Great Lakes except Lake Erie, protracted winter/spring runoff throughout the Great Lakes Basin, and a higher runoff depth during the winter‐spring period over time for all watersheds except Lake Superior. Lake Ontario had the greatest change in the date by which 50% of the Jan–May runoff had been discharged (6 days earlier from 1950 to 2019). For winter/spring runoff duration, the most extreme change was observed in Lake Erie (increase of 19 days), and for runoff depth, the greatest change was in the Lake Huron Basin (increase of 3.3 cm). Results were similar for natural and impacted streams. Our results demonstrate dramatic changes in runoff patterns over the last seven decades in the Great Lakes Basin concomitant with previously published changes in precipitation and snowpack. Shifts toward earlier, more protracted, and more voluminous runoff likely change nutrient loading and mixing patterns that influence primary producers, particularly in the nearshore areas of the Great Lakes.
Simultaneous photocatalytic degradation and SERS detection of tetracycline with self-sustainable and recyclable ternary PI/TiO2/Ag flexible microfibers
Authors: Han Donglai , Guo Boyang , Li Yanru , Feng Wei , Liu Keyan , Wu Tianna , Wan Yuchun , Wang Lili , Gao Ming , Liu Yang , Yang Lili , Wei Maobin , Yang Shuo 
Published: March 2024

AbstractFacile and efficient photocatalysts using sunlight, as well as fast and sensitive surface-enhanced Raman spectroscopy (SERS) substrates, are urgently needed for practical degradation of tetracycline (TC). To meet these requirements, a new paradigm for PI/TiO2/Ag organic‒inorganic ternary flexible microfibers based on semiconducting titanium dioxide (TiO2), the noble metal silver (Ag) and the conjugated polymer polyimide (PI) was developed by engineering a simple method. Under sunlight, the photocatalytic characteristics of the PI/TiO2/Ag flexible microfibers containing varying amounts of Ag quantum dots (QDs) were evaluated with photocatalytic degradation of TC in aqueous solution. The results demonstrated that the amount of Ag affected the photocatalytic activity. Among the tested samples, PI/TiO2/Ag-0.07 (93.1%) exhibited a higher photocatalytic degradation rate than PI/TiO2 (25.7%), PI/TiO2/Ag-0.05 (77.7%), and PI/TiO2/Ag-0.09 (63.3%). This observation and evaluation conducted in the present work strongly indicated a charge transfer mechanism. Moreover, the PI/TiO2/Ag-0.07 flexible microfibers exhibited highly sensitive SERS detection, as demonstrated by the observation of the Raman peaks for TC even at an extremely low concentration of 10–10 moles per liter. The excellent photocatalytic performance and SERS detection capability of the PI/TiO2/Ag flexible microfibers arose from the Schottky barrier formed between Ag and TiO2 and also from the outstanding plasmonic resonance and visible light absorptivity of Ag, along with immobilization by the PI. The successful synthesis of PI/TiO2/Ag flexible microfibers holds significant promise for sensitive detection and efficient photocatalytic degradation of antibiotics.
Scanning ultrasound-mediated memory and functional improvements do not require amyloid-β reduction
Authors: Leinenga Gerhard , To Xuan Vinh , Bodea Liviu-Gabriel , Yousef Jumana , Richter-Stretton Gina , Palliyaguru Tishila , Chicoteau Antony , Dagley Laura , Nasrallah Fatima , Götz Jürgen 
Published: March 2024

AbstractA prevalent view in treating age-dependent disorders including Alzheimer’s disease (AD) is that the underlying amyloid plaque pathology must be targeted for cognitive improvements. In contrast, we report here that repeated scanning ultrasound (SUS) treatment at 1 MHz frequency can ameliorate memory deficits in the APP23 mouse model of AD without reducing amyloid-β (Aβ) burden. Different from previous studies that had shown Aβ clearance as a consequence of blood-brain barrier (BBB) opening, here, the BBB was not opened as no microbubbles were used. Quantitative SWATH proteomics and functional magnetic resonance imaging revealed that ultrasound induced long-lasting functional changes that correlate with the improvement in memory. Intriguingly, the treatment was more effective at a higher frequency (1 MHz) than at a frequency within the range currently explored in clinical trials in AD patients (286 kHz). Together, our data suggest frequency-dependent bio-effects of ultrasound and a dissociation of cognitive improvement and Aβ clearance, with important implications for the design of trials for AD therapies.
Dnmt3a1 regulates hippocampus-dependent memory via the downstream target Nrp1
Authors: Kupke Janina , Klimmt Julien , Mudlaff Franziska , Schwab Maximilian , Lutsik Pavlo , Plass Christoph , Sticht Carsten , Oliveira Ana M. M. 
Published: March 2024

AbstractEpigenetic factors are well-established players in memory formation. Specifically, DNA methylation is necessary for the formation of long-term memory in multiple brain regions including the hippocampus. Despite the demonstrated role of DNA methyltransferases (Dnmts) in memory formation, it is unclear whether individual Dnmts have unique or redundant functions in long-term memory formation. Furthermore, the downstream processes controlled by Dnmts during memory consolidation have not been investigated. In this study, we demonstrated that Dnmt3a1, the predominant Dnmt in the adult brain, is required for long-term spatial object recognition and contextual fear memory. Using RNA sequencing, we identified an activity-regulated Dnmt3a1-dependent genomic program in which several genes were associated with functional and structural plasticity. Furthermore, we found that some of the identified genes are selectively dependent on Dnmt3a1, but not its isoform Dnmt3a2. Specifically, we identified Neuropilin 1 (Nrp1) as a downstream target of Dnmt3a1 and further demonstrated the involvement of Nrp1 in hippocampus-dependent memory formation. Importantly, we found that Dnmt3a1 regulates hippocampus-dependent memory via Nrp1. In contrast, Nrp1 overexpression did not rescue memory impairments triggered by reduced Dnmt3a2 levels. Taken together, our study uncovered a Dnmt3a-isoform-specific mechanism in memory formation, identified a novel regulator of memory, and further highlighted the complex and highly regulated functions of distinct epigenetic regulators in brain function.
Heterogeneity of hepatocellular carcinoma: from mechanisms to clinical implications
Authors: Safri Fatema , Nguyen Romario , Zerehpooshnesfchi Shadi , George Jacob , Qiao Liang 
Published: March 2024

AbstractHepatocellular Carcinoma (HCC) is one of the most common types of primary liver cancer. Current treatment options have limited efficacy against this malignancy, primarily owing to difficulties in early detection and the inherent resistance to existing drugs. Tumor heterogeneity is a pivotal factor contributing significantly to treatment resistance and recurrent manifestations of HCC. Intratumoral heterogeneity is an important aspect of the spectrum of complex tumor heterogeneity and contributes to late diagnosis and treatment failure. Therefore, it is crucial to thoroughly understand the molecular mechanisms of how tumor heterogeneity develops. This review aims to summarize the possible molecular dimensions of tumor heterogeneity with an emphasis on intratumoral heterogeneity, evaluate its profound impact on the diagnosis and therapeutic strategies for HCC, and explore the suitability of appropriate pre-clinical models that can be used to best study tumor heterogeneity; thus, opening new avenues for cancer treatment.
One-step creation of CMS lines using a BoCENH3-based haploid induction system in Brassica crop
Authors: Han Fengqing , Zhang Xiaoli , Liu Yuxiang , Liu Yumei , Zhao Hong , Li Zhansheng 
Published: March 2024

AbstractHeterosis utilization in a large proportion of crops depends on the use of cytoplasmic male sterility (CMS) tools, requiring the development of homozygous fertile lines and CMS lines1. Although doubled haploid (DH) technology has been developed for several crops to rapidly generate fertile lines2,3, CMS lines are generally created by multiple rounds of backcrossing, which is time consuming and expensive4. Here we describe a method for generating both homozygous fertile and CMS lines through in vivo paternal haploid induction (HI). We generated in-frame deletion and restored frameshift mutants of BoCENH3 in Brassica oleracea using the CRISPR/Cas9 system. The mutants induced paternal haploids by outcrossing. We subsequently generated HI lines with CMS cytoplasm, which enabled the generation of homozygous CMS lines in one step. The BoCENH3-based HI system provides a new DH technology to accelerate breeding in Brassica and other crops.
States of epistemic curiosity interfere with memory for incidental scholastic facts
Authors: Keller Nicole E. , Salvi Carola , Leiker Emily K. , Gruber Matthias J. , Dunsmoor Joseph E. 
Published: March 2024

AbstractCuriosity can be a powerful motivator to learn and retain new information. Evidence shows that high states of curiosity elicited by a specific source (i.e., a trivia question) can promote memory for incidental stimuli (non-target) presented close in time. The spreading effect of curiosity states on memory for other information has potential for educational applications. Specifically, it could provide techniques to improve learning for information that did not spark a sense of curiosity on its own. Here, we investigated how high states of curiosity induced through trivia questions affect memory performance for unrelated scholastic facts (e.g., scientific, English, or historical facts) presented in close temporal proximity to the trivia question. Across three task versions, participants viewed trivia questions closely followed in time by a scholastic fact unrelated to the trivia question, either just prior to or immediately following the answer to the trivia question. Participants then completed a surprise multiple-choice memory test (akin to a pop quiz) for the scholastic material. In all three task versions, memory performance was poorer for scholastic facts presented after trivia questions that had elicited high versus low levels of curiosity. These results contradict previous findings showing curiosity-enhanced memory for incidentally presented visual stimuli and suggest that target information that generates a high-curiosity state interferes with encoding complex and unrelated scholastic facts presented close in time.
Electrocortical correlates of attention differentiate individual capacity in associative learning
Authors: Raynal Elsa , Schipper Kate , Brandner Catherine , Ruggeri Paolo , Barral Jérôme 
Published: March 2024

AbstractAssociative learning abilities vary considerably among individuals, with attentional processes suggested to play a role in these variations. However, the relationship between attentional processes and individual differences in associative learning remains unclear, and whether these variations reflect in event-related potentials (ERPs) is unknown. This study aimed to investigate the relationship between attentional processes and associative learning by recording electrocortical activity of 38 young adults (18–32 years) during an associative learning task. Learning performance was assessed using the signal detection index d’. EEG topographic analyses and source localizations were applied to examine the neural correlates of attention and associative learning. Results revealed that better learning scores are associated with (1) topographic differences during early (126–148 ms) processing of the stimulus, coinciding with a P1 ERP component, which corresponded to a participation of the precuneus (BA 7), (2) topographic differences at 573–638 ms, overlapping with an increase of global field power at 530–600 ms, coinciding with a P3b ERP component and localized within the superior frontal gyrus (BA11) and (3) an increase of global field power at 322–507 ms, underlay by a stronger participation of the middle occipital gyrus (BA 19). These insights into the neural mechanisms underlying individual differences in associative learning suggest that better learners engage attentional processes more efficiently than weaker learners, making more resources available and displaying increased functional activity in areas involved in early attentional processes (BA7) and decision-making processes (BA11) during an associative learning task. This highlights the crucial role of attentional mechanisms in individual learning variability.
Cage escape governs photoredox reaction rates and quantum yields
Authors: Wang Cui , Li Han , Bürgin Tobias H. , Wenger Oliver S. 
Published: March 2024

AbstractPhotoredox catalysis relies on light-induced electron transfer leading to a radical pair comprising an oxidized donor and a reduced acceptor in a solvent cage. For productive onward reaction to occur, the oxidized donor and the reduced acceptor must escape from that solvent cage before they undergo spontaneous reverse electron transfer. Here we show the decisive role that cage escape plays in three benchmark photocatalytic reactions, namely, an aerobic hydroxylation, a reductive debromination and an aza-Henry reaction. Using ruthenium(II)- and chromium(III)-based photocatalysts, which provide inherently different cage escape quantum yields, we determined quantitative correlations between the rates of photoredox product formation and the cage escape quantum yields. These findings can be largely rationalized within the framework of Marcus theory for electron transfer.
Natural language instructions induce compositional generalization in networks of neurons
Authors: Riveland Reidar , Pouget Alexandre 
Published: March 2024

AbstractA fundamental human cognitive feat is to interpret linguistic instructions in order to perform novel tasks without explicit task experience. Yet, the neural computations that might be used to accomplish this remain poorly understood. We use advances in natural language processing to create a neural model of generalization based on linguistic instructions. Models are trained on a set of common psychophysical tasks, and receive instructions embedded by a pretrained language model. Our best models can perform a previously unseen task with an average performance of 83% correct based solely on linguistic instructions (that is, zero-shot learning). We found that language scaffolds sensorimotor representations such that activity for interrelated tasks shares a common geometry with the semantic representations of instructions, allowing language to cue the proper composition of practiced skills in unseen settings. We show how this model generates a linguistic description of a novel task it has identified using only motor feedback, which can subsequently guide a partner model to perform the task. Our models offer several experimentally testable predictions outlining how linguistic information must be represented to facilitate flexible and general cognition in the human brain.
Dynamical behavior of water wave phenomena for the 3D fractional WBBM equations using rational sine-Gordon expansion method
Authors: Mamun Abdulla-Al- , Lu Chunhui , Ananna Samsun Nahar , Uddin Md Mohi 
Published: March 2024

AbstractTo examine the dynamical behavior of travelling wave solutions of the water wave phenomenon for the family of 3D fractional Wazwaz-Benjamin-Bona-Mahony (WBBM) equations, this work employs the rational Sine-Gordon expansion (RSGE) approach based on the conformable fractional derivative. The method generalizes the well-known sine-Gordon expansion using the sine-Gordon equation as an auxiliary equation. In contrast to the conventional sine-Gordon expansion method, it takes a more general approach, a rational function rather than a polynomial one of the solutions of the auxiliary equation. The method described above is used to generate various solutions of the WBBM equations for hyperbolic functions, including soliton, singular soliton, multiple-soliton, kink, cusp, lump-kink, kink double-soliton, etc. The RSGE method contributes to our understanding of nonlinear phenomena, provides exact solutions to nonlinear equations, aids in studying solitons, advances mathematical techniques, and finds applications in various scientific and engineering disciplines. The answers are graphically shown in three-dimensional (3D) surface plots and contour plots using the MATLAB program. The resolutions of the equation, which have appropriate parameters, exhibit the absolute wave configurations in all screens. Furthermore, it can be inferred that the physical characteristics of the discovered solutions and their features may aid in our understanding of the propagation of shallow water waves in nonlinear dynamics.
Vibration reduction of human body biodynamic response in sitting posture under vibration environment by seat backrest support
Authors: Ding Wei , Wang Leizhi , Chen Zhaobo , Ao Hongrui , Yan Hui 
Published: March 2024

AbstractFour-degree-of-freedom (4-DOF) human–chair coupling models are constructed to characterize the different contact modes between the head, chest back, waist back and backrest. The seat-to-head transfer ratio (STHT) is used as an evaluation metric for vibration reduction effectiveness. The simulated vibration reduction ratio of the model is close to the experimental results, which proves the validity of the model. The peak STHT is obviously reduced (P < 0.05, T-test) with seat-backrest support. The experiments show that supporting the head ($${a}_{1}$$

a
1

, P < 0.05, Wilcoxon matched-pairs signed ranks) has the best vibration reduction effect (21%), supporting the chest back ($${a}_{2}$$

a
2

, P < 0.05) has a reduced effect (11%), and supporting the waist back ($${a}_{3}$$

a
3

, P < 0.05) has the weakest effect (4%). When the upper torso is in full contact with the backrest, the peak STHT curve and resonance frequency are positively correlated with the contact stiffness of the seat surface and negatively correlated with the contact damping. In order to reduce the seat-to-head transfer ratio, the lowest STHT peak and lowest total energy judgments were proposed as the selection methods for the selection of the contact stiffness and damping of the backrest in two environments (periodic and non-periodic excitation), respectively.