bluuebunny/crossref_metadata_2025_split huggingface dataset:
The geochemistry of Lower Tertiary basic dykes in the Eastern Red Hills district, Isle of Skye, and their significance for the proposed magmatic evolution of the Skye Centre
Authors: Bell B. R. 
Published: December 2006

AbstractMajor- and trace-element data are presented for basic dykes intruding the Eastern Red Hills district of the Tertiary igneous centre of Skye. In addition to a group of transitional basic intrusions, members of two other distinctive suites have been identified: (1) a series of basic alkaline intrusions (akin to the ‘Beinn Dearg Type’ of Harker, 1904), with characteristic high alkali contents, distinctive values of K2O/(K2O + Na2O) and rare-earth-element (REE) patterns similar to those of many of the Tertiary lavas of north Skye, and, (2) tholeiitic dykes, with low concentrations ofK2O, Ti/Zr values of c. 100, and flat REE patterns similar to those of the so-called Fairy Bridge magma type (Mattey et al., 1977). From these data and a consideration of the time relationships of the various components of the Skye Centre, agreement is found with Thompson et al.'s (1972, 1980) model of a mantle thermal anomaly which generates the magmatic sequence: transitional basic magmas, giving way to olivine-bearing tholeiitic magmas (at the culmination of the anomaly), and, finally, late-stage basic alkaline magmas at the end of the activity.
Grandidierite from a pelitic xenolith in the Haddo House complex, NE Scotland
Authors: Hero R. K. , Windley B. F. , Ackermand D. 
Published: December 2006

AbstractGrandidierite occurs in the outer margin of a biotite-rich pelitic xenolith in norite close to the contact of a tourmaline-bearing granite in the Haddo House norite-gabbro complex. The boron for the grandidierite was derived by metasomatism from the granite. The assemblage is (decreasing order): An55–51 plagioclase (65%), biotite (10%), spinel (10%), cordierite (5%), corundum (5%), ilmenite, grandidierite (< 1%), rutile, sphene, zircon. XMg range is grandidierite (0.80–0.78) > cordierite (0.78) > biotite (c. 0.59) > spinel (0.35–0.27). The grandidierite has little chemical variation: SiO2, 19.9–20.5%; Al2O3, 51.3–51.9%. A compilation of all grandidierite analyses in the literature shows that the only substitutions are Fe2+ ⇌ Mg and Al ⇌ Fe3+, the XMg range being 0.98 to 0.19.
The evolution of saline and thermal groundwaters in the Carnmenellis granite
Authors: Edmunds W. M. , Andrews J. N. , Burgess W. G. , Kay R. L. F. , Lee D. J. 
Published: December 2006

AbstractThe Carnmenellis granite and its aureole contain the only recorded thermal groundwaters (up to 52 °C) in British granites. They occur as springs in tin mines at depths between 200 and 700 m and most are saline (maximum mineralization 19 310 mg 1−1). Mining activity has disturbed the groundwater circulation pattern developed over a geological time-scale and levels of bomb-produced tritium (> 4 TU) indicate that a significant component (up to 65 %) of the most saline waters are of recent origin. All components of all the mine waters are of meteoric origin. Radiogenic 4He contents, 40Ar/36Ar ratios, and uranium series geochemistry suggest that the thermal component has a likely residence time of at least 5 × 104 years and probably of order 106 years.The thermal waters have molar Na+/Cl− ratios considerably less than 1 but they are enriched relative to sea water in all major cations except Mg. The groundwater is also particularly enriched in Li with contents ranging up to 125 mg 1−1. The groundwater salinity, which may reach a maximum of 30 000 mg 1−1, is shown to result from weathering reactions of biotite (probably through a chloritization step) and plagioclase feldspar, to kaolinite. On volumetric considerations, fluid inclusions cannot contribute significantly to the groundwater salinity, and stable isotope ratios rule out any contribution from sea water.Groundwater silica contents and molar Na+/K+ ratios suggest that the likely equilibration temperature is 54°C, which would imply a depth of circulation of about 1.2 km.
Gahnite compositions compared
Authors: Batchelor Richard A. , Kinnaird Judith A. 
Published: December 2006

AbstractBlue-coloured gem-quality spinel from Nigeria was analysed by wet chemical methods (using atomic absorption spectrophotometry) and investigated by X-ray diffraction. The results showed it to be gahnite (unit cell dimension a=8.091±0.003 Å) containing 36.7% ZnO, 3.58% FeO, and 0.12% MgO. The spinel has an RI of 1.79 and density between 4.4 and 4.59. Broadening of the n[111] XRD reflections indicates a measure of compositional heterogeneity. The gahnite analyses were compared with compositions of zinc spinels from other parts of the world. The analyses cluster into two distinct groups, Mg-rich spinels of metamorphic origin and Mg-poor spinels (including the Nigerian gahnite) with igneous affinities. Diadochy seems to operate within the zinc spinel structure between (Zn + Mn) and (Fe + Mg).
Some observations on the properties of dypingite, Mg5(CO3)4(OH)2·5H2O, and related minerals
Authors: Canterford J. H. , Tsambourakis G. , Lambert B. 
Published: December 2006

AbstractDypingite, Mg5(CO3)4(OH)2·5H2O, was found in materials obtained during the production of high purity magnesia from crude magnesite by the calcination/CO2-leaching process. The snow-white, finely crystalline dypingite contained 41.0% MgO; the theoretical value is 41.5%. The X-ray powder data revealed a long period structure with a strong peak at 31.0 Å. The five strongest reflections (Å) and their estimated intensities (I/I0) were 10.4 (100), 31.0 (40), 15.62 (40), 5.86 (30), and 6.34 (20). The DTA curve showed ten endothermic reactions with maxima at 43, 50, 77, 86, 105, 127, 180, 260, 420, and 514°C and an exothermic reaction at 495°C.
On the occurrence of niobium-tantalum and other rare-element minerals in the Meldon aplite, Devonshire
Authors: Knorring Oleg von , Condliffe Eric 
Published: December 2006

AbstractA number of rare-element minerals from the Meldon aplite are described, e.g. native arsenic and antimony, arsenolite, stibiconite, and various niobium-tantalum minerals. Some of the minerals are new to the occurrence and some may be new to the British Isles. Particular attention has been paid to the Nb-Ta minerals and a large number of electron-microprobe analyses for manganocolumbite, manganotantalite, and microlite are presented. Examination of numerous, minute crystals and fragments of columbite-tantalite revealed a complex oscillatory zoning, indicating a slow rate of cooling and perhaps incomplete miscibility of the isomorphous columbite-tantalite series.
Secondary ilvaite in a dolerite dyke from Rogaland, SW Norway
Authors: Barton Michael , van Bergen Manfred J. 
Published: December 2006

AbstractIlvaite is an alteration product of carbonate, which itself replaced clinopyroxene, in a Precambrian tholeiitic dyke. Additional secondary minerals are ferroactinolite, cummingtonite, chlorite, biotite, prehnite, and epidote. Microprobe analyses demonstrate that the ilvaite is close to the ideal end-member composition [CaFe22+Fe3+Si2O8 (OH)] and that only cummingtonites, Mg/(Mg+Fe2+) 0.77–0.39, and carbonates (solid solutions between calcite and dolomite, dolomite and ankerite, magnesite and siderite) show significant compositional variations. It is estimated that ilvaite formed at temperatures < 470 °C and at pressures < 2 kbar, probably during a low-grade metamorphic event (or events) associated with the Caledonian orogeny. The fluids involved in the alteration process contained both CO2 and H2O, initial fluids probably being richer in CO2 than later ones. Ilvaite may be more common in hydrothermally altered igneous rocks than previously supposed.
Unusual sector zoning in Lewisian zircons
Authors: Hoffman J. F. , Long J. V. P. 
Published: December 2006

AbstractAn unusual form of sector zoning has been recorded in some Lewisian zircons. The sectors lie in a plane cut perpendicular to the c-axis and are observed as variations in the intensity of cathodoluminescence, and in trace-element concentrations. Sectors radiating from the centre of growth out to the {100} faces exhibit low-intensity cathodoluminescence and are enriched in Y and depleted in Hf and Zr. Those radiating to the {110} faces are brightly luminescent, slightly enriched in Hf and depleted in Y. X-ray diffraction data, and comparison with previous studies of zircons, suggest that the sectors vary slightly in crystallographic orientation, such that the boundaries between sectors form discontinuities in the structure.
Retzian-(La), a new mineral from Sterling Hill, Sussex County, New Jersey
Authors: Dunn Pete J. , Peacor Donald R. , Simmons William B. 
Published: December 2006

AbstractRetzian-(La), ideally, Mn2La(AsO4)(OH)4, is a new rare-earth analogue of retzian and retzian-(Nd). It was found associated with willemite, calcite, and franklinite, in the Stealing Hill Mine, Ogdensburg, Sussex County, New Jersey, USA. Retzian-(La) is orthorhombic, space group Pban, with a = 5.670(7), b = 12.01(1), and c = 4.869(8) Å. The strongest lines in the X-ray powder diffraction pattern are (d,I/I0,hkl): 3.51 80 111, 2.715 100 131, 1.848 50 061, 1.456 40. Microprobe analysis yielded MnO 25.2, MgO 3.7, ZnO 1.2, As2O5 26.5, La2O3 10.6, Ce2O3 8.8, Nd2O3 8.2, Pr2O3 5.1, Sm2O3 2.2, Y2O3 2.5, H2O [7.7], sum = 101.7 wt. %, corresponding to an La-dominant member of the retzian series.Retzian-(La) forms 0.5 mm euhedral crystals composed of the forms {001}, {010}, {110}, and {150}; the crystals have pseudohexagonal habit. It is reddish-brown, with vitreous luster, no cleavage, density > 4.2 g/cm3. Optically, it is biaxial, positive, 2V = 82° with α = 1.766, β = 1.773, and γ = 1.788. Dispersion is strong, r > v; pleochroism is very weak; orientation is X = c, Y= b, Z = a; absorption is Z > Y > X.
Caratiite, a potassium, new sulphate-chloride of copper and from the lavas of the 1869 Vesuvius eruption
Authors: Clark A. M. , Fejer E. E. , Couper A. G. 
Published: December 2006

AbstractCaratiite is a sulphate-chloride of potassium and copper with ideal formula K4Cu4O2(SO4)4MeCl (where Me = Na and/or Cu); it formed as fine green acicular crystals in lava of the 1869 eruption of Mt. Vesuvius, Naples, Italy. Caratiite is tetragonal, space group I4; a 13.60(2), c 4.98(1) Å, Z = 2. The strongest lines of the powder pattern are [d Å, I, hkl]: 9.61 100 (110); 6.80 80 (200); 4.296 60 (310); 3.015 100b (420,321); 2.747 70 (411); 2.673 60 (510); 2.478 60 (002); 2.388 70 (431,501); 2.281 60 (600). The mineral is uniaxial positive, ω 1.598, ɛ 1.711; it does not fluoresce under either short- or long-wavelength ultra-violet light. The specific gravity is 3.0 (meas.) and 3.22 (calc.).
The β-tail domain (βTD) regulates physiologic ligand binding to integrin CD11b/CD18
Authors: Gupta Vineet , Gylling Annette , Alonso José Luis , Sugimori Takashi , Ianakiev Petre , Xiong Jiang-Ping , Amin Arnaout M. 
Published: December 2006

AbstractCrystallographic and electron microscopy studies revealed genuflexed (bent) integrins in both unliganded (inactive) and physiologic ligandbound (active) states, suggesting that local conformational changes are sufficient for activation. Herein we have explored the role of local changes in the contact region between the membrane-proximal β-tail domain (βTD) and the ligand-binding βA domain of the bent conformation in regulating interaction of integrin CD11b/CD18 (αMβ2) with its physiologic ligand iC3b. We replaced the βTD CD loop residues D658GMD of the CD18 (β2) subunit with the equivalent D672SSG of the β3 subunit, with AGAA or with NGTD, expressed the respective heterodimeric receptors either transiently in epithelial HEK293T cells or stably in leukocytes (K562), and measured their ability to bind iC3b and to conformation-sensitive mAbs. In the presence of the physiologic divalent cations Ca2+ plus Mg2+ (at 1 mM each), the modified integrins showed increased (in HEK293) or constitutive (in K562) binding to iC3b compared with wild-type receptors. K562 expressing the βTD-modified integrins bound in Ca2+Mg2+ to the βA-directed high-affinity reporter mAb 24 but not to mAb KIM127, a reporter of the genu-straightened state. These data identify a role for the membrane proximal βTD as an allosteric modulator of integrin activation.
Interrelation between polyploidization and megakaryocyte differentiation: a gene profiling approach
Authors: Raslova Hana , Kauffmann Audrey , Sekkaï Dalila , Ripoche Hugues , Larbret Fréderic , Robert Thomas , Le Roux Diana Tronik , Kroemer Guido , Debili Najet , Dessen Philippe , Lazar Vladimir , Vainchenker William 
Published: December 2006

Abstract
Polyploidization is a part of the normal developmental process leading to platelet production during megakaryocyte (MK) differentiation. Ploidization is mainly involved in cell enlargement, but it is not clear whether gene expression is modified during MK ploidization. In this study, human MKs were grown from CD34+ cells in the presence of thrombopoietin and sorted according to their ploidy level. A pangenomic microarray technique was applied to compare gene expression in 2N-, 4N-, 8N-, and 16N-sorted MKs. Using hierarchical clustering, we demonstrated that 2N and 4N MKs or 8N and 16N MKs are 2 different close populations with 105 discriminating genes. In the second approach, we determined the profile of genes that were continuously down- and up-regulated during polyploidization. Among the 100 down-regulated genes, 24 corresponded to genes involved in DNA replication and repair. The great majority of up-regulated genes corresponded to genes directly involved in platelet functions, such as genes encoding specific platelet glycoproteins and α-granule proteins, actin and microtubule cytoskeleton, factors involved in signaling, and transport proteins. Together, these results suggest that MK polyploidization per se does not regulate gene expression but is intrinsically included in the differentiation process.
In vivo administration of lentiviral vectors triggers a type I interferon response that restricts hepatocyte gene transfer and promotes vector clearance
Authors: Brown Brian D. , Sitia Giovanni , Annoni Andrea , Hauben Ehud , Sergi Lucia Sergi , Zingale Anna , Roncarolo Maria Grazia , Guidotti Luca G. , Naldini Luigi 
Published: December 2006

AbstractLiver gene transfer is a highly sought goal for the treatment of inherited and infectious diseases. Lentiviral vectors (LVs) have many desirable properties for hepatocyte-directed gene delivery, including the ability to integrate into nondividing cells. Unfortunately, upon systemic administration, LV transduces hepatocytes relatively inefficiently compared with nonparenchymal cells, and the duration of transgene expression is often limited by immune responses. Here, we investigated the role of innate antiviral responses in these events. We show that administration of LVs to mice triggers a rapid and transient IFNαβ response. This effect was dependent on functional vector particles, and in vitro challenge of antigen-presenting cells suggested that plasmacytoid dendritic cells initiated the response. Remarkably, when LVs were administered to animals that lack the capacity to respond to IFNαβ, there was a dramatic increase in hepatocyte transduction, and stable transgene expression was achieved. These findings indicate that, even in the setting of acute delivery of replication-defective vectors, IFNs effectively interfere with transduction in a cell-type–specific manner. Moreover, because disabling a single component of the innate/immune network was sufficient to establish persistent xenoantigen expression, our results raise the hope that the immunologic barriers to gene therapy are less insurmountable than expected.
Modification of the mycobacteriophage Ms6 attP core allows the integration of multiple vectors into different tRNAala T-loops in slow- and fast-growing mycobacteria
Authors: Dos Vultos Tiago , Méderlé Isabelle , Abadie Valérie , Pimentel Madalena , Moniz-Pereira José , Gicquel Brigitte , Reyrat Jean-Marc , Winter Nathalie 
Published: December 2006

Abstract

Background
Mycobacteriophage Ms6 integrates into Mycobacterium smegmatis and M. bovis BCG chromosome at the 3' end of tRNAala genes. Homologous recombination occurs between the phage attP core and the attB site located in the T-loop. Integration-proficient vectors derived from Ms6 are useful genetic tools, but their insertion sites in the BCG chromosome remain poorly defined. The primary objective of this study was to identify Ms6 target genes in M. smegmatis and BCG. We then aimed to modify the attP site in Ms6-derived vectors, to switch integration to other tRNAala loci. This provided the basis for the development of recombinant M. bovis BCG strains expressing several reporter genes inserted into different tRNAala genes.

Results
The three tRNAala genes are highly conserved in M. smegmatis and BCG. However, in the T-loop of tRNAalaU and tRNAalaV containing the attB site, a single base difference was observed between the two species. We observed that the tRNAalaU gene was the only site into which Ms6-derived integration-proficient vectors integrated in M. smegmatis, whereas in BCG, the tRNAalaV gene was used as the target. No integration occurred in the BCG tRNAalaU T-loop, despite a difference of only one base from the 26-base Ms6 attP core. We mutated the attP core to give a perfect match with the other tRNAala T-loops from M. smegmatis and BCG. Modification of the seven-base T-loop decreased integration efficiency, identifying this site as a possible site of strand exchange. Finally, two Ms6 vectors were constructed to integrate two reporter genes into the tRNAalaU and tRNAalaV T-loops of the same BCG chromosome.

Conclusion
Small changes in the 7 bp T-loop attP site of Ms6 made it possible to use another attB site, albeit with a lower integration efficiency. These molecular studies on BCG tRNAala genes made it possible to create valuable tools for the site-directed insertion of several genes in the same BCG strain. These tools will be useful for the development of novel multivalent vaccines and genetic studies.
Acupuncture for chronic neck pain: a pilot for a randomised controlled trial
Authors: Salter Gemma C , Roman Mark , Bland Martin J , MacPherson Hugh 
Published: December 2006

AbstractBackgroundAcupuncture is increasingly being used for many conditions including chronic neck pain. However the evidence remains inconclusive, indicating the need for further well-designed research. The aim of this study was to conduct a pilot randomised controlled parallel arm trial, to establish key features required for the design and implementation of a large-scale trial on acupuncture for chronic neck pain.MethodsPatients whose GPs had diagnosed neck pain were recruited from one general practice, and randomised to receive usual GP care only, or acupuncture (up to 10 treatments over 3 months) as an adjunctive treatment to usual GP care. The primary outcome measure was the Northwick Park Neck Pain Questionnaire (NPQ) at 3 months. The primary analysis was to determine the sample size for the full scale study.ResultsOf the 227 patients with neck pain identified from the GP database, 28 (12.3%) consenting patients were eligible to participate in the pilot and 24 (10.5%) were recruited to the trial. Ten patients were randomised to acupuncture, receiving an average of eight treatments from one of four acupuncturists, and 14 were randomised to usual GP care alone. The sample size for the full scale trial was calculated from a clinically meaningful difference of 5% on the NPQ and, from this pilot, an adjusted standard deviation of 15.3%. Assuming 90% power at the 5% significance level, a sample size of 229 would be required in each arm in a large-scale trial when allowing for a loss to follow-up rate of 14%. In order to achieve this sample, one would need to identify patients from databases of GP practices with a total population of 230,000 patients, or approximately 15 GP practices roughly equal in size to the one involved in this study (i.e. 15,694 patients).ConclusionThis pilot study has allowed a number of recommendations to be made to facilitate the design of a large-scale trial, which in turn will help to clarify the existing evidence base on acupuncture for neck pain.
ICD-10 coding algorithms for defining comorbidities of acute myocardial infarction
Authors: So Lawrence , Evans Dewey , Quan Hude 
Published: December 2006

Abstract

Background
With the introduction of ICD-10 throughout Canada, it is important to ensure that Acute Myocardial Infarction (AMI) comorbidities employed in risk adjustment methods remain valid and robust. Therefore, we developed ICD-10 coding algorithms for nine AMI comorbidities, examined the validity of the ICD-10 and ICD-9 coding algorithms in detection of these comorbidities, and assessed their performance in predicting mortality. The nine comorbidities that we examined were shock, diabetes with complications, congestive heart failure, cancer, cerebrovascular disease, pulmonary edema, acute renal failure, chronic renal failure, and cardiac dysrhythmias.

Methods
Coders generated a comprehensive list of ICD-10 codes corresponding to each AMI comorbidity. Physicians independently reviewed and determined the clinical relevance of each item on the list. To ensure that the newly developed ICD-10 coding algorithms were valid in recording comorbidities, medical charts were reviewed. After assessing ICD-10 algorithms' validity, both ICD-10 and ICD-9 algorithms were applied to a Canadian provincial hospital discharge database to predict in-hospital, 30-day, and 1-year mortality.

Results
Compared to chart review data as a 'criterion standard', ICD-9 and ICD-10 data had similar sensitivities (ranging from 7.1 – 100%), and specificities (above 93.6%) for each of the nine AMI comorbidities studied. The frequencies for the comorbidities were similar between ICD-9 and ICD-10 coding algorithms for 49,861 AMI patients in a Canadian province during 1994 – 2004. The C-statistics for predicting 30-day and 1 year mortality were the same for ICD-9 (0.82) and for ICD-10 data (0.81).

Conclusion
The ICD-10 coding algorithms developed in this study to define AMI comorbidities performed similarly as past ICD-9 coding algorithms in detecting conditions and risk-adjustment in our sample. However, the ICD-10 coding algorithms should be further validated in external databases.
Quantitative expansion of ES cell-derived myeloid progenitors capable of differentiating into macrophages
Authors: Odegaard Justin I , Vats Divya , Zhang Lina , Ricardo-Gonzalez Roberto , Smith Kristi L , Sykes David B , Kamps Mark P , Chawla Ajay 
Published: December 2006

AbstractMacrophages participate in physiologic and pathologic processes through elaboration of distinct activation programs. Studies with macrophage cell systems have revealed much concerning the importance of this pleiotropic cell; however, these studies are inherently limited by three factors: heterogeneity of the target cell population, poor capacity to elaborate various activation programs, and lack of a genetically tractable model system for loss- and gain-of-function studies. Although definitive, hematopoietic lineages can be isolated from embryonic stem (ES) cells, these isolation procedures are inefficient and time-consuming and require elaborate cell-sorting protocols. We therefore examined whether myeloid precursors, capable of differentiating into macrophages, could be conditionally expanded in vitro. Here, we report methods for selective isolation and immortalization of ES cell-derived myeloid precursors by estrogen-regulated HoxA9 protein. Using this new macrophage differentiation system, an unlimited number of custom-designed macrophages with defined functional characteristics can be generated from any targeted ES cell. In combination with knockout or small interfering RNA knockdown technologies, this macrophage differentiation system provides a powerful tool for high throughput analysis of regulatory mechanisms controlling macrophage activation in health and disease.