bluuebunny/crossref_metadata_2025_split huggingface dataset:
Investigation the biological activities and the metabolite profiles of endophytic fungi isolated from Gundelia tournefortii L.
Authors: Ebadi Mostafa , Ahmadi Fatemeh , Tahmouresi Hossein , Pazhang Mohammad , Mollaei Saeed 
Published: March 2024

AbstractEndophytic fungi are microorganisms that are considered as a potential source of natural compounds, and can be applied in various industries. The aims of this research were molecular identification of endophytic fungi isolated from the Gundelia tournefortii stems, and investigation their biological activities as well as phenolic and fatty acid profile. Surface sterilized stems of G. tournefortii were placed on potato dextrose agar (PDA) to isolate the fungal endophytes. Genomic DNA was extracted by CTAB method, and PCR amplification was performed by ITS 1 and ITS 4 as primers. The enzyme production of endophytic fungi was determined based on the formation of a clear zone that appeared around the colonies of fungus. The anti-oxidant activity was evaluated by measuring the amount of free radicals DPPH. Also, the total phenol and flavonoid contents were measured obtained by Folin-Ciocalteu and aluminum chloride colorimetric methods, respectively. Moreover, the separation and identification of phenolic acids and fatty acids were done by HPLC and GC, respectively. Phylogenetic analysis was done based on the Internal Transcribed Spacer (ITS) region, and five isolates were identified as following: Aspergillus niger, Penicillium glabrum, Alternaria alternata, A. tenuissima, and Mucor circinelloides. Evaluation of the enzymatic properties showed that P. gabrum (31 ± 1.9 mm), and A. niger (23 ± 1.7) had more ability for producing pectinase and cellulase. The anti-oxidant activity of isolates showed that A. alternata extract (IC50 = 471 ± 29 µg/mL) had the highest anti-oxidant properties, followed by A. tenuissima extract (IC50 = 512 ± 19 µg/mL). Also, the extract of A. alternata had the greatest amount of total phenols and flavonoids contents (8.2 ± 0.4 mg GAL/g and 2.3 ± 0.3 mg QE/g, respectively). The quantification analysis of phenolic acid showed that rosmarinic acid, para-coumaric acid, and meta-coumaric acid (42.02 ± 1.31, 7.53 ± 0.19, 5.41 ± 0.21 mg/g, respectively) were the main phenolic acids in the studied fungi. The analysis of fatty acids confirmed that, in all fungi, the main fatty acids were stearic acid (27.9–35.2%), oleic acid (11.3–17.3%), palmitic acid (16.9–23.2%), linoleic acid (5.8–11.6%), and caprylic acid (6.3–10.9%). Our finding showed that endophytic fungi are a source of bioactive compounds, which could be used in various industries. This is the first report of endophytic fungi associated with G. tournefortii, which provides knowledge on their future use on biotechnological processes.
Investigation of the rhythmic recruitment of tear neutrophils to the ocular surface and their phenotypes
Authors: Jin Yutong , Minten Ceili , Jenkins Mara , Jones Lyndon , Gorbet Maud 
Published: March 2024

AbstractHundreds of thousands of polymorphonuclear neutrophils (PMNs) are collected from the ocular surface upon waking, while few are harvested during daytime. This study aimed to investigate potential factors contributing to the circadian infiltration of tear PMNs, including changes in IL-8 and C5a in tears, and their phenotypes across different time points in a 24-h cycle. Tear PMNs were collected using a gentle eyewash after 2-h and 7-h of sleep (eye closure, EC) at night, after 2-h EC during the day, and towards the end of the afternoon. Significantly fewer cells were collected after 2-h EC during the day compared to 2-h EC at night. A positive correlation between IL-8 and PMN numbers existed, but not with C5a. Tear PMNs collected after 2-h EC at night were less degranulated and possessed a larger activation potential compared to 7-h EC. Tear PMNs from 7-h EC at night exhibited hyper-segmented nuclei and more NETosis compared to 2 h EC night, indicating an aged and activated phenotype. The diurnal-nocturnal recruitment pattern of tear PMNs may be driven by increased IL-8 in nighttime tears. Higher degranulation and NETs point to the significant activation of tear PMNs on the ocular surface during prolonged eye closure at night.
Effects of the interplay between topology and function of an integrated urban development on patterns of user movement
Authors: Manivannan Ajaykumar , Chin Wei Chien Benny , Gopalakrishnan Srilalitha , Wong Daniel K. H. , Schroepfer Thomas , Bouffanais Roland 
Published: March 2024

AbstractWith the advent of distributed multi-sensory networks of devices, vast troves of real-time data can be gathered about our interactions with the built environment. These rich data sets can be mined to achieve improved and informed data-driven designs of buildings, neighborhoods, and potentially entire cities. Among those, integrated developments have the peculiarity of combining multiple functions within a compact space and, as such, behave as microcosms of a city that can help address the problem of urban sprawl and density. However, a general lack of data and framework about integrated developments hinders our ability to test design hypotheses about the complex interplay between heterogeneity in both space and function. Here, we apply a data-driven approach to analyze the joint influence of topology and function on user movement within a state-of-the-art integrated development in Singapore. Specifically, we leverage the network representation of the building and use movement data collected from 51 individuals over a month. We show evidence of correlation (40%) between the spatial network features and human movement at the building level. We are also able to quantify the relationship between the functional and spatial components of the integrated development through user movement. Previous studies have shown a 60% or higher correlation between the topology and human movement at the city or country scales. Our moderate correlation, therefore, implies that more factors influencing user movement are at play. The heterogeneity in the spatial function introduced trips with diverse origins and destinations. A further data-driven analysis integrating origins and destinations reveals both qualitative and quantitative means of studying the relationship between the built environment and the processes that take place in them.
Copper(II) phosphate as a promising catalyst for the degradation of ciprofloxacin via photo-assisted Fenton-like process
Authors: Rozmyślak Mateusz , Walkowiak Adrian , Frankowski Marcin , Wolski Lukasz 
Published: March 2024

AbstractThis work aims to unravel the potential of copper(II) phosphate as a new promising heterogenous catalyst for the degradation of ciprofloxacin (CIP) in the presence of H2O2 and/or visible light (λ > 400 nm). For this purpose, copper(II) phosphate was prepared by a facile precipitation method and fully characterized. Of our particular interest was the elucidation of the kinetics of CIP degradation on the surface of this heterogeneous catalyst, identification of the main reactive oxygen species responsible for the oxidative degradation of CIP, and the evaluation of the degradation pathways of this model antibiotic pollutant. It was found that the degradation of the antibiotic proceeded according to the pseudo-first-order kinetics. Copper(II) phosphate exhibited ca. 7 times higher CIP degradation rate in a Fenton-like process than commercial CuO (0.00155 vs. 0.00023 min−1, respectively). Furthermore, the activity of this metal phosphate could be significantly improved upon exposure of the reaction medium to visible light (reaction rate = 0.00445 min−1). In a photo-assisted Fenton-like process, copper(II) phosphate exhibited the highest activity in CIP degradation from among all reference samples used in this study, including CuO, Fe2O3, CeO2 and other metal phosphates. The main active species responsible for the degradation of CIP were hydroxyl radicals.
An efficient intrusion detection model based on convolutional spiking neural network
Authors: Wang Zhen , Ghaleb Fuad A. , Zainal Anazida , Siraj Maheyzah Md , Lu Xing 
Published: March 2024

AbstractMany intrusion detection techniques have been developed to ensure that the target system can function properly under the established rules. With the booming Internet of Things (IoT) applications, the resource-constrained nature of its devices makes it urgent to explore lightweight and high-performance intrusion detection models. Recent years have seen a particularly active application of deep learning (DL) techniques. The spiking neural network (SNN), a type of artificial intelligence that is associated with sparse computations and inherent temporal dynamics, has been viewed as a potential candidate for the next generation of DL. It should be noted, however, that current research into SNNs has largely focused on scenarios where limited computational resources and insufficient power sources are not considered. Consequently, even state-of-the-art SNN solutions tend to be inefficient. In this paper, a lightweight and effective detection model is proposed. With the help of rational algorithm design, the model integrates the advantages of SNNs as well as convolutional neural networks (CNNs). In addition to reducing resource usage, it maintains a high level of classification accuracy. The proposed model was evaluated against some current state-of-the-art models using a comprehensive set of metrics. Based on the experimental results, the model demonstrated improved adaptability to environments with limited computational resources and energy sources.
Surgical impact of bilateral transient occlusion of uterine and utero-ovarian arteries during laparoscopic myomectomy
Authors: Moratalla-Bartolomé Enrique , Lázaro-de-la-Fuente Jesús , López-Carrasco Irene , Cabezas-López Elena , Carugno Jose , Sancho-Sauco Javier , Pelayo-Delgado Irene 
Published: March 2024

AbstractThe objective of this article is to compare the amount of intraoperative blood loss during laparoscopic myomectomy when performing bilateral transient clamping of the uterine and utero-ovarian arteries versus no intervention. It´s a randomized controlled prospective study carried out in the Department of Obstetrics and Gynecology Ramón y Cajal University Hospital and HM Montepríncipe-Sanchinarro University Hospital, Madrid, Spain, in women with fibroid uterus undergoing laparoscopic myomectomy. Eighty women diagnosed with symptomatic fibroid uterus were randomly assigned to undergo laparoscopic myomectomy without additional intervention (Group A) or temporary clamping of bilateral uterine and utero-ovarian arteries prior to laparoscopic myomectomy (Group B). Estimated blood loss, operating time, length of hospital stay, and postoperative hemoglobin values were compared in both groups. The number of fibroids removed was similar in both groups (p = 0.77). Estimated blood loss was lower in the group of patients with prior occlusion of uterine arteries (p = 0.025) without increasing operating time (p = 0.17) nor length of stay (p = 0.17). No patient had either intra or postoperative complications. Only two patients (2.5%) required blood transfusion after surgery. We conclude that temporary clamping of bilateral uterine arteries prior to laparoscopic myomectomy is a safe intervention that reduces blood loss without increasing operative time.
Significance of pyrolytic temperature, application rate and incubation period of biochar in improving hydro-physical properties of calcareous sandy loam soil
Authors: Albalasmeh Ammar A. , Quzaih Mohammad Z. , Gharaibeh Mamoun A. , Rusan Munir , Mohawesh Osama E. , Rababah Samer R. , Alqudah Ahmad , Alghamdi Abdulaziz G. , Naserin Amir 
Published: March 2024

AbstractBiochar is increasingly recognized for its ability to enhance hydro-physical properties of soil, offering promising solutions for improving soil structure, water retention, and overall agricultural productivity. In this study, sandy loam soil was amended at different rates (0, 15, 30, and 60 t ha−1) of biochar produced from olive pomace (Jift) at different pyrolysis temperatures (300, 400, 500, and 600 °C), and incubated for 30, 60, and 90 days. The biochar-amended soils were collected for analysis after each incubation period for infiltration rate, aggregate stability, soil water retention, water repellency, and penetration resistance. At 300 °C, aggregate stability increased with biochar amendments; the highest value (65%) was after 60 days of incubation. At other pyrolysis temperatures, aggregate stability decreased, or no effect of temperature was observed. Also, at 300 °C, the infiltration rate was decreased with biochar application and the lowest value of (0.14 ml/min) was at 90 days of incubation. At other pyrolysis temperatures, the infiltration rate was increased with increased biochar application rate. Water retention was increased with biochar application at 300 °C; however, biochar application did not affect water retention at other pyrolysis temperatures. These results strongly suggest the improvement of soil physical and hydraulic properties following the addition of biochar amendment. Overall, biochar had positive effects on hydro-physical properties. The biochar produced at 300 °C pyrolysis temperature was the most beneficial to agriculturally relevant hydraulic conditions. However, field assessments are necessary to evaluate the long-term effects of biochar on hydro-physical properties.
A randomized controlled study to assess the effect of mosapride citrate on intestinal recovery following gastrectomy
Authors: Jun Shiyeol , Oh Seyeol , Jung Ji Eun , Kwon In Gyu , Noh Sung Hoon 
Published: March 2024

AbstractThe enhanced recovery after surgery (ERAS) protocol, including prokinetic medications, is commonly used to prevent postoperative ileus. Prospective studies evaluating the effectiveness of mosapride citrate, a prokinetic 5-hydroxytryptamine 4 receptor agonist, in patients undergoing gastrectomy within the ERAS framework are lacking. This double-blind randomized trial included patients who were scheduled for laparoscopic or robotic gastrectomy for gastric cancer. Participants were randomly assigned to either a control (placebo) or experimental (mosapride citrate) group, with drugs administered on postoperative days 1–5. Bowel motility was evaluated based on bowel transit time measured using radiopaque markers, first-flatus time, and amount of food intake. No significant differences were observed in baseline characteristics between the two groups. On postoperative day 3, no significant difference was observed in the number of radiopaque markers visible in the colon between the groups. All factors associated with bowel recovery, including the time of first flatus, length of hospital stay, amount of food intake, and severity of abdominal discomfort, were similar between the two groups. Mosapride citrate does not benefit the recovery of intestinal motility after minimally invasive gastrectomy in patients with gastric cancer. Therefore, routine postoperative use of mosapride citrate is not recommended in such patients.
Integration of polygenic and gut metagenomic risk prediction for common diseases
Authors: Liu Yang , Ritchie Scott C. , Teo Shu Mei , Ruuskanen Matti O. , Kambur Oleg , Zhu Qiyun , Sanders Jon , Vázquez-Baeza Yoshiki , Verspoor Karin , Jousilahti Pekka , Lahti Leo , Niiranen Teemu , Salomaa Veikko , Havulinna Aki S. , Knight Rob , Méric Guillaume , Inouye Michael 
Published: March 2024

AbstractMultiomics has shown promise in noninvasive risk profiling and early detection of various common diseases. In the present study, in a prospective population-based cohort with ~18 years of e-health record follow-up, we investigated the incremental and combined value of genomic and gut metagenomic risk assessment compared with conventional risk factors for predicting incident coronary artery disease (CAD), type 2 diabetes (T2D), Alzheimer disease and prostate cancer. We found that polygenic risk scores (PRSs) improved prediction over conventional risk factors for all diseases. Gut microbiome scores improved predictive capacity over baseline age for CAD, T2D and prostate cancer. Integrated risk models of PRSs, gut microbiome scores and conventional risk factors achieved the highest predictive performance for all diseases studied compared with models based on conventional risk factors alone. The present study demonstrates that integrated PRSs and gut metagenomic risk models improve the predictive value over conventional risk factors for common chronic diseases.
Regulation of Zbp1 by miR-99b-5p in microglia controls the development of schizophrenia-like symptoms in mice
Authors: Kaurani Lalit , Islam Md Rezaul , Heilbronner Urs , Krüger Dennis M , Zhou Jiayin , Methi Aditi , Strauss Judith , Pradhan Ranjit , Schröder Sophie , Burkhardt Susanne , Schuetz Anna-Lena , Pena Tonatiuh , Erlebach Lena , Bühler Anika , Budde Monika , Senner Fanny , Kohshour Mojtaba Oraki , Schulte Eva C , Schmauß Max , Reininghaus Eva Z , Juckel Georg , Kronenberg-Versteeg Deborah , Delalle Ivana , Odoardi Francesca , Flügel Alexander , Schulze Thomas G , Falkai Peter , Sananbenesi Farahnaz , Fischer Andre 
Published: March 2024

AbstractCurrent approaches to the treatment of schizophrenia have mainly focused on the protein-coding part of the genome; in this context, the roles of microRNAs have received less attention. In the present study, we analyze the microRNAome in the blood and postmortem brains of schizophrenia patients, showing that the expression of miR-99b-5p is downregulated in both the prefrontal cortex and blood of patients. Lowering the amount of miR-99b-5p in mice leads to both schizophrenia-like phenotypes and inflammatory processes that are linked to synaptic pruning in microglia. The microglial miR-99b-5p-supressed inflammatory response requires Z-DNA binding protein 1 (Zbp1), which we identify as a novel miR-99b-5p target. Antisense oligonucleotides against Zbp1 ameliorate the pathological effects of miR-99b-5p inhibition. Our findings indicate that a novel miR-99b-5p-Zbp1 pathway in microglia might contribute to the pathogenesis of schizophrenia.
Salmonella manipulates macrophage migration via SteC-mediated myosin light chain activation to penetrate the gut-vascular barrier
Authors: Dai Yuanji , Zhang Min , Liu Xiaoyu , Sun Ting , Qi Wenqi , Ding Wei , Chen Zhe , Zhang Ping , Liu Ruirui , Chen Huimin , Chen Siyan , Wang Yuzhen , Yue Yingying , Song Nannan , Wang Weiwei , Jia Haihong , Ma Zhongrui , Li Cuiling , Chen Qixin , Li Bingqing 
Published: March 2024

AbstractThe intestinal pathogen Salmonella enterica rapidly enters the bloodstream after the invasion of intestinal epithelial cells, but how Salmonella breaks through the gut-vascular barrier is largely unknown. Here, we report that Salmonella enters the bloodstream through intestinal CX3CR1+ macrophages during early infection. Mechanistically, Salmonella induces the migration/invasion properties of macrophages in a manner dependent on host cell actin and on the pathogen effector SteC. SteC recruits host myosin light chain protein Myl12a and phosphorylates its Ser19 and Thr20 residues. Myl12a phosphorylation results in actin rearrangement, and enhanced migration and invasion of macrophages. SteC is able to utilize a wide range of NTPs other than ATP to phosphorylate Myl12a. We further solved the crystal structure of SteC, which suggests an atypical dimerization-mediated catalytic mechanism. Finally, in vivo data show that SteC-mediated cytoskeleton manipulation is crucial for Salmonella breaching the gut vascular barrier and spreading to target organs.
Pericyte signaling via soluble guanylate cyclase shapes the vascular niche and microenvironment of tumors
Authors: Zhu Jing , Yang Wu , Ma Jianyun , He Hao , Liu Zhen , Zhu Xiaolan , He Xueyang , He Jing , Chen Zhan , Jin Xiaoliang , Wang Xiaohong , He Kaiwen , Wei Wu , Hu Junhao 
Published: March 2024

AbstractPericytes and endothelial cells (ECs) constitute the fundamental components of blood vessels. While the role of ECs in tumor angiogenesis and the tumor microenvironment is well appreciated, pericyte function in tumors remains underexplored. In this study, we used pericyte-specific deletion of the nitric oxide (NO) receptor, soluble guanylate cyclase (sGC), to investigate via single-cell RNA sequencing how pericytes influence the vascular niche and the tumor microenvironment. Our findings demonstrate that pericyte sGC deletion disrupts EC–pericyte interactions, impairing Notch-mediated intercellular communication and triggering extensive transcriptomic reprogramming in both pericytes and ECs. These changes further extended their influence to neighboring cancer-associated fibroblasts (CAFs) and tumor-associated macrophages (TAMs) through paracrine signaling, collectively suppressing tumor growth. Inhibition of pericyte sGC has minimal impact on quiescent vessels but significantly increases the vulnerability of angiogenic tumor vessels to conventional anti-angiogenic therapy. In conclusion, our findings elucidate the role of pericytes in shaping the tumor vascular niche and tumor microenvironment and support pericyte sGC targeting as a promising strategy for improving anti-angiogenic therapy for cancer treatment.
Reprogramming of arachidonic acid metabolism using α-terpineol to alleviate asthma: insights from metabolomics
Authors: Rong Ying , Liu Fanglin , Zhou Hui , Yu Tong , Qin Zhaolong , Cao Qianwen , Liu Luyao , Ma Xiaoge , Qu Lingbo , Xu Peirong , Liao Xinglin , Jiang Qiman , Zhang Nan , Xu Xia 
Published: March 2024

α-Terpineol and Hp-β-CD were prepared for Ter-Hp-β-CD inclusion complex for nebulized inhalation treatment in asthmatic mice. Biochemical indices and differential metabolite assays in mice showed that α-Terpineol is a potential drug to prevent asthma by reprogramming arachidonic acid metabolism.