bluuebunny/crossref_metadata_2025_split huggingface dataset:
Nucleotide sequence diversity of the 5S rDNA spacer in the simple blade kelp genera Laminaria, Cymathaere and Kjellmaniella (Laminariales, Phaeophyceae) from northern Japan
Authors: Yotsukura Norishige , Kawai Tadashi , Kawashima Shoji , Ebata Hiroki , Ichimura Terunobu 
Published: November 2006

SUMMARYTandem repeats of the 5S ribosomal RNA gene (rDNA) were confirmed for almost all laminarian, cymathaerean and kjellmaniellan species distributed in northern Japan. The nucleotide sequence of the spacer region between tandemly repeated 5S rDNA was investigated for 79 samples from 31 sites. Phylogenetic analysis of the 29 different sequences detected revealed two lineages: (1) Laminaria coriacea group, including Laminaria coriacea Miyabe, Laminaria cichorioides Miyabe, Laminaria sachalinensis (Miyabe) Miyabe, Laminaria yendoana Miyabe, Cymathaere japonica Miyabe et Nagai, Kjellmaniella gyrata (Kjellman) Miyabe and Kjellmaniella crassifolia Miyabe; (2) Laminaria japonica group including Laminaria japonica Areschoug, Laminaria religiosa Miyabe, Laminaria ochotensis Miyabe, Laminaria diabolica Miyabe, Laminaria longipedalis Okamura, Laminaria angustata Kjellman and Laminaria longissima Miyabe. In addition, the latter group was divided into two: subgroup (2a) including L. angustata and L. longissima and subgroup (2b) including L. japonica, L. religiosa, L. ochotensis, L. diabolica and L. longipedalis. Members of the three groups differ from each other in the appearance of ornaments (bullation, gyration and folds) on the surface of the blade. These are absent in group (2a), only present in the early stages of the lifespan of group (2b), and present for the duration of the lifespan in group (1). Genetic distances among samples were extremely small within group (2a). Together with previous crossing studies and data on ocean currents and distribution, these findings suggest that gene flow occurs within group (2b).
Seasonal variations in the diel vertical distribution of phytoplankton and zooplankton in a shallow pond
Authors: Yamamoto Yoshimasa , Nakahara Hiroyuki 
Published: November 2006

SUMMARYThe seasonal succession of phytoplankton diversity, and the variations in the diel vertical distribution of phyto‐ and zooplankton were investigated in a small shallow pond (1.7 m water depth) in 2003. It was inferred that the water tended to stratify weakly in the daytime from February to June. In February and April, the green alga Golenkinia radiata Chodat dominated the phytoplankton assemblage. The cell density of G. radiata greatly decreased in April, when rotifers increased near the bottom. The vertical mixing was attenuated in June, large populations of the euglenoids (Lepocinclis salina Fritsch, Phacus acuminatus Stokes, Trachelomonas hispida (Perty) Stein et Deflandre) developed, and the cyanobacterium Aphanizomenon flos‐aquae var. klebahnii Elenk. appeared at low density. Euglenoids and A. flos‐aquae were mostly distributed in the bottom layer. In late September, when the water was mixed throughout the day, euglenoids and A. flos‐aquae were distributed evenly throughout the water column. The zooplankton (cyclopoid copepods and rotifers) densities in September were the lowest throughout the year. The vertical mixing increased in November, and the phytoplankton community was composed of A. flos‐aquae, P. acuminatus, T. hispida and the green alga Ankistrodesmus falcatus (Corda) Ralfs. In November, at the final stage of water bloom of A. flos‐aquae, its population density decreased with depth. The two euglenoids exhibited similar cell distributions at 0.8 m and 1.6 m during 1–3 November. A. falcatus was distributed evenly throughout the water column; however, when the vertical mixing lessened, the cells at the surface started to sink. Copepod nauplii and rotifers appeared at high densities in November. Seasonal variation in the phytoplankton community structure in the pond seemed to be related to the vertical mixing of the water. In addition, zooplankton, especially rotifers, might play an important role in initiating a spring clear‐water phase and in the bloom collapse of A. flos‐aquae.
Stephanodiscus kusuensis, sp. nov a new Pleistocene diatom from Southern Japan
Authors: Julius Matthew L. , Curtin Michael , Tanaka Hiroyuki 
Published: November 2006

SUMMARYA new fossil diatom, Stephanodiscus kusuensis sp. nov., is described from a diatomite deposit from the Kusu Basin, Oita Prefecture Japan. Radiometric age estimates of the strata in which the taxon occurs are 400–500 kyr. The new species is distinct from all other known species of Stephanodiscus because it possesses a highly pronounced double concentric undulation and two distinct arrangements of central strutted processes. Cladistic analysis is used to identify the phylogenetic position of this taxon with respect to other Stephanodiscus species.
Reproductive morphology and taxonomic reappraisal ofExophyllum wentiiWeber‐van Bosse (Rhodomelaceae, Rhodophyta) from Bali Island, Indonesia
Authors: Indy Jeane R. , N’Yeurt Antoine D. R. , Yasui Hajime 
Published: November 2006

SUMMARYThe little‐known and rarely collected algaExophyllum wentiiWeber‐van Bosse is re‐described in detail from the type material, as well as from new collections from Indonesia, which for the first time reveal in detail the structure of cystocarpic and spermatangial plants and the development of tetrasporangial stichidia under culture conditions. New morphological reproductive information confirms placement of the genusExophyllumwithin the Rhodomelaceae.Exophyllumis distinguished from other related genera within the Rhodomelaceae by its cartilaginous, non‐trichoblastic decumbent thallus with multiple holdfasts and its discoid spermatangial organs. Some Pacific material earlier attributed toE. wentiiwas found to be misidentified and re‐assigned to the Dasyaceae.
A further phylogenetic study of the heterotrophic dinoflagellate genus, Protoperidinium (Dinophyceae) based on small and large subunit ribosomal RNA gene sequences
Authors: Yamaguchi Aika , Kawamura Hiroshi , Horiguchi Takeo 
Published: November 2006

SUMMARYThe heterotrophic marine dinoflagellate genus Protoperidinium is the largest genus in the Dinophyceae. Previously, we reported on the intrageneric and intergeneric phylogenetic relationships of 10 species of Protoperidinium, from four sections, based on small subunit (SSU) rDNA sequences. The present paper reports on the impact of data from an additional 5 species and, therefore, an additional two sections, using the SSU rDNA data, but now also incorporating sequence data from the large subunit (LSU) rDNA. These sequences, in isolation and in combination, were used to reconstruct the evolutionary history of the genus. The LSU rDNA trees support a monophyletic genus, but the phylogenetic position within the Dinophyceae remains ambiguous. The SSU, LSU and SSU + LSU rDNA phylogenies support monophyly in the sections Avellana, Divergentia, Oceanica and Protoperidinium, but the section Conica is paraphyletic. Therefore, the concept of discrete taxonomic sections based on the shape of 1′ plate and 2a plate is upheld by molecular phylogeny. Furthermore, the section Oceanica is indicated as having an early divergence from other groups within the genus. The sections Avellana and Excentrica and a clade combining the sections Divergentia/Protoperidinium derived from Conica‐type dinoflagellates independently. Analysis of the LSU rDNA data resulted in the same phylogeny as that obtained using SSU rDNA data and, with increased taxon sampling, including members of new sections, a clearer idea of the evolution of morphological features within the genus Protoperidinium was obtained. Intraspecific variation was found in Protoperidinium conicum (Gran) Balech, Protoperidinium excentricum (Paulsen) Balech and Protoperidinium pellucidum Bergh based on SSU rDNA data and also in Protoperidinium claudicans (Paulsen) Balech, P. conicum and Protoperidinium denticulatum (Gran et Braarud) Balech based on LSU rDNA sequences. The common occurrence of base pair substitutions in P. conicum is indicative of the presence of cryptic species.
Phenology of the rhodomelarian algae Neorhodomela aculeata and Ceramium kondoi and their survival strategies against herbivorous snails
Authors: Choi Han Gil , Lee Ji Hee , Choo Young‐Kug , Chai Kyu‐Yun , Kim Young Sik , Han Jung‐Soo , Prathep Anchana , Nam Ki Wan 
Published: November 2006

SUMMARYThe seasonal growth and reproductive phenology of Neorhodomela aculeata (Perestenko) Masuda and Ceramium kondoi Yendo, and the food preferences of herbivorous snails were examined to elucidate (i) why snails select the fronds of N. aculeata for their habitat; and (ii) the survival strategies of the two red algae under grazing pressures. The maximal lengths and weights of both algal species were recorded for each season over a 12‐month period beginning with the spring of 2003. C. kondoi grew in length at a faster rate than N. aculeate, whereas the turf alga N. aculeata produced new branches from the tips of broken branches. The reproductive period of C. kondoi was between the spring and summer but the reproductive organs of N. aculeata were observed throughout the year. The algal loss rate of fresh N. aculeata to snails was low but snails had a food preference for N. aculeata when compared to C. kondoi in an artificial food experiment. These results indicate that snails may adapt to chemical compounds characteristic of N. aculeata and that the alga further reduces predation damage by its structural resistance. In conclusion, the survival strategies of C. kondoi appear to be rapid growth, seasonal sexual reproduction, and a delicately branched frond morphology that reduces stable feeding patterns of its predators plus high tissue nitrogen content, whereas the survival strategy of N. aculeata includes regenerative growth responses, structural toughness and chemical defenses while under the grazing pressure of herbivorous snails.
Linear relationship between Gaeumannomyces graminis var. tritici (Ggt) genotypic frequencies and disease severity on wheat roots in the field
Authors: Lebreton Lionel , Gosme Marie , Lucas Philippe , Guillerm‐Erckelboudt Anne‐Yvonne , Sarniguet Alain 
Published: November 2006

SummaryIn order to investigate potential links existing between Gaeumannomyces graminis var. tritici (Ggt) population structure and disease development during polyetic take‐all epidemics in sequences of Ggt host cereals, seven epidemics in fields with different cropping histories were monitored during the seasons 2001/2002 (two fields), 2002/2003 (two fields) and 2003/2004 (three fields). Take‐all incidence and severity were measured at stem elongation and Ggt populations were characterized. The 73 isolates collected in the two fields in 2001/2002 were distributed into two multilocus genotypes, G1 and G2 according to amplified fragment length polymorphism analysis. A monolocus molecular marker amplified by F‐12 random amplification polymorphism DNA primer sizing between 1.9 and 2.0 kb that gave strictly the same distinction between the two multilocus genotypes was further applied to measure G1/G2 frequencies among Ggt populations in all fields (266 isolates). The ratios of G1 to G2 differed between fields with different cropping histories. A linear relationship between G2 frequency among Ggt populations and disease severity at stem elongation was measured during the three cropping seasons. When take‐all decline was observed, G2 frequencies were low in first wheat crops, highest in short‐term sequences and intermediate in longer sequences of consecutive crops of Ggt host cereals. This pattern could be the result of population selection by environmental conditions, in particular by microbial antagonism during the parasitic phase of the fungus. In order to better understand take‐all epidemic dynamics, the distinction between these two genotypes could be a basis to develop models that link approaches of quantitative epidemiology and advances in population genetics of Ggt.
Choosing between Alternative Classification Criteria to Measure the Labour Force State
Authors: Battistin Erich , Rettore Enrico , Trivellato Ugo 
Published: November 2006

SummaryLabour force counting relies on general guidelines that are set by the International Labour Office to classify individuals into three labour force states: employment, unemployment and inactivity. However, the resulting statistics are known to be sensitive to slight variations in operational definitions which are prima facie consistent with the general guidelines. We consider two interpretations of the general guidelines, operationalized by the criterion that is currently followed by Eurostat and a criterion that was followed by the Italian Statistical Office up to 1992. After showing that the labour force statistics resulting from the two criteria differ considerably, we compare individuals whose classification depends on the criterion that is adopted with individuals whose classification is common between criteria to study the boundary between unemployment and inactivity. An application of our strategy is presented using data from the Italian Labour Force Survey, painting a picture neatly against the criterion that is currently followed by Eurostat.
Holistic Trajectories: a Study of Combined Employment, Housing and Family Careers by using Multiple-Sequence Analysis
Authors: Pollock Gary 
Published: November 2006

SummarySocial science applications of sequence analysis have thus far involved the development of a typology on the basis of an analysis of one or two variables which have had a relatively low number of different states. There is a yet unexplored potential for sequence analysis to be applied to a greater number of variables and thereby a much larger state space. The development of a typology of employment experiences, for example, without reference to data on changes in housing, marital and family status is arguably inadequate. The paper demonstrates the use of sequence analysis in the examination of multivariable combinations of status as they change over time and shows that this method can provide insights that are difficult to achieve through other analytic methods. The data that are examined here provide support to intuitive understandings of clusters of common experiences which are both life course specific and related to socio-economic factors. Housing tenure is found to be of key importance in understanding the holistic trajectories that are examined. This suggests that life course trajectories are sharply differentiated by experience of social housing.
Are Football Referees Really Biased and Inconsistent?: Evidence on the Incidence of Disciplinary Sanction in the English Premier League
Authors: Dawson Peter , Dobson Stephen , Goddard John , Wilson John 
Published: November 2006

SummaryThe paper presents a statistical analysis of patterns in the incidence of disciplinary sanction (yellow and red cards) that were taken against players in the English Premier League over the period 1996–2003. Several questions concerning sources of inconsistency and bias in refereeing standards are examined. Evidence is found to support a time consistency hypothesis, that the average incidence of disciplinary sanction is predominantly stable over time. However, a refereeing consistency hypothesis, that the incidence of disciplinary sanction does not vary between referees, is rejected. The tendency for away teams to incur more disciplinary points than home teams cannot be attributed to the home advantage effect on match results and appears to be due to a refereeing bias favouring the home team.
Conditional Gaussian Mixture Modelling for Dietary Pattern Analysis
Authors: Fahey Michael T. , Thane Christopher W. , Bramwell Gemma D. , Coward W. Andy 
Published: November 2006

SummaryFree-living individuals have multifaceted diets and consume foods in numerous combinations. In epidemiological studies it is desirable to characterize individual diets not only in terms of the quantity of individual dietary components but also in terms of dietary patterns. We describe the conditional Gaussian mixture model for dietary pattern analysis and show how it can be adapted to take account of important characteristics of self-reported dietary data. We illustrate this approach with an analysis of the 2000–2001 National Diet and Nutrition Survey of adults. The results strongly favoured a mixture model solution allowing clusters to vary in shape and size, over the standard approach that has been used previously to find dietary patterns.
Does avian species richness in natural patch mosaics follow the forest fragmentation paradigm?
Authors: Pavlacky D. C. , Anderson S. H. 
Published: November 2006

AbstractAs one approaches the north‐eastern limit of pinyon (Pinus spp.) juniper (Juniperus spp.) vegetation on the Colorado Plateau, USA, woodland patches become increasingly disjunct, grading into sagebrush (Artemisia spp.)‐dominated landscapes. Patterns of avian species richness in naturally heterogeneous forests may or may not respond to patch discontinuity in the same manner as bird assemblages in fragmented agricultural systems. We used observational data from naturally patchy woodlands and predictions derived from studies of human‐modified agricultural forests to estimate the effects of patch area, shape, isolation and distance to contiguous woodland on avian species richness. We predicted that patterns of species richness in naturally patchy juniper woodlands would differ from those observed in fragmented agricultural systems. Our objectives were to (1) estimate the effect of naturally occurring patch structure on avian species richness with respect to habitat affinity and migratory strategy and (2) assess the concordance of the effects to predictions from agricultural forest systems. We used the analogy between populations and communities to estimate species richness, where species are treated as individuals in the application of traditional capture–recapture theory. Information‐theoretic model selection showed that overall species richness was explained primarily by the species area relationship. There was some support for a model with greater complexity than the equilibrium theory of island biogeography where the isolation of large patches resulted in greater species richness. Species richness of woodland‐dwelling birds was best explained by the equilibrium hypothesis with partial landscape complementation by open‐country species in isolated patches. Species richness within specific migratory strategies showed concomitant increases and no shifts in species composition along the patch area gradient. Our results indicate that many patterns of species richness considered to be fragmentation effects may be general consequences of patch discontinuity and are ubiquitous in naturally heterogeneous systems. There was no evidence for the effects of patch shape and distance to contiguous woodland in juniper woodland, suggesting edge effects and dependence upon regional species pools are characteristics of fragmented agricultural systems. Natural patch mosaics may provide benchmarks for evaluating fragmentation effects and managing forests by mimicking natural landscape patterns.
Patch‐ and landscape‐scale effects on howler monkey distribution and abundance in rainforest fragments
Authors: Anzures‐Dadda A. , Manson R. H. 
Published: November 2006

AbstractVariation at both the patch and landscape scale is known to influence the distribution and abundance of arboreal monkeys in rainforest fragments. However, few studies have examined the factors associated with these different scales of focus simultaneously. Using stepwise logistic‐regression and generalized linear models (GLMs), howler monkey Alouatta palliata distribution and abundance were examined as a function of patch quality (fragment area, shape, tree DBH and canopy height) and landscape connectivity (isolation, total forest area, fragment and road abundance, corridor abundance and length) in 119 rainforest fragments in northern Chiapas, Mexico. The positive correlation observed between monkey distribution (presence/absence) and both fragment area and abundance may be explained by increased resources within larger fragments and those whose proximity allows greater exploration by monkeys. In contrast, GLM analysis indicated that monkey abundance in inhabited fragments was positively correlated with corridor abundance, canopy height and fragment area. These relationships could be explained by greater reproductive investments by monkeys in forest fragments whose size, degree of perturbation and degree of connectivity with other fragments suggest greater overall resource availability. Future studies should explicitly include a multi‐scale approach to understanding the factors affecting patterns of monkey distribution and abundance, particularly as this relates to measures of and interactions between patch connectivity and resource availability.
Alarm responses are maintained during captive rearing in chicks of endangered kaki
Authors: Galbraith J. A. , Sancha S. E. , Maloney R. F. , Hauber M. E. 
Published: November 2006

AbstractThe maintenance of species‐specific behavioural repertoires and traditions is an important but often implicit goal of conservation efforts. When captive rearing is used as a conservation practice, it becomes critical to address its possible implications for the social and behavioural traits of developing individuals. In particular, animals must retain or acquire many of their behavioural abilities to increase the likelihood of survival upon release into the wild. This study investigated the behavioural development of critically endangered kaki (black stilt:Himantopus novaezelandiae) chicks reared without live adult conspecifics. The captive rearing programme included playbacks of adult kaki alarm calls during cleaning and handling of precocial chicks housed as groups. We used videotaped observations and playback experiments to address the following questions: do kaki chicks respond differentially to (1) familiar versus unfamiliar adult kaki alarm calls and (2) conspecific alarm versus heterospecific control vocalizations. Adult‐naïve kaki chicks exhibited a varied behavioural repertoire over their early development. In multivariate analyses, when age was statistically controlled, chicks showed responses to familiar and unfamiliar alarm calls that were similar in magnitude. In contrast, following conspecific alarm calls chicks had longer average latencies to resume pre‐playback activities than following heterospecific vocalizations. Although the generality of these conclusions is limited by experimental constraints stemming from working with an endangered species, the findings suggest that current management techniques produce captive‐reared kaki for release into the wild that possess many of the behavioural and auditory recognition skills that are required for survival.