bluuebunny/crossref_metadata_2025_split huggingface dataset:
Experimental study on flow characteristics of jet ventilation in crossflow in confined mine spaces
Authors: Wang Jue , Jiang Cheng , Zhou Xihua , Kang Jiayu , Yu Shixuan , Bai Gang 
Published: April 2024

AbstractThe increasing depth of mine excavation presents greater challenges in mine ventilation and in managing cooling energy consumption. Therefore, there is an urgent need for comprehensive research on jet ventilation influenced by low-speed crossflows. This study investigated the impact of flow velocity ratios (R) and jet exit diameters (d) on flow-field distribution and flow characteristics through velocity measurements and smoke flow visualization experiments. The results of the study revealed two distinct types of air lakes formed by jet ventilation in crossflow (JVIC), with one being wall-attached and the other suspended. Notably, a significant secondary flow phenomenon was observed in the near-field near the upper wall. Additionally, the deflection angle (θj) of JVIC decreases as R and d/D increase, leading to the formation and movement of a semi-confined point (SP) and a confined point (CP) in the -x direction. Moreover, the wall confinement effect diminishes the jet’s diffusion and deflection ability in the -z direction, leading to increased penetration in the x direction. Before the formation of the SP, the deflection section of the jet lengthens, followed by a rapid shortening upon its formation. Finally, the study further developed empirical equations for the jet axial trajectory and diffusion width.
Climate and land use shape the water balance and water quality in selected European lakes
Authors: Paule-Mercado Ma. Cristina , Rabaneda-Bueno Rubén , Porcal Petr , Kopacek Marek , Huneau Frederic , Vystavna Yuliya 
Published: April 2024

AbstractThis study provides insights into factors that influence the water balance of selected European lakes, mainly in Central Europe, and their implications for water quality. An analysis of isotopic, chemical and land use data using statistical and artificial intelligence models showed that climate, particularly air temperature and precipitation, played a key role in intensifying evaporation losses from the lakes. Water balance was also affected by catchment factors, notably groundwater table depth. The study shows that lakes at lower altitudes with shallow depths and catchments dominated by urban or crop cover were more sensitive to water balance changes. These lakes had higher evaporation-to-inflow ratios and increased concentrations of total nitrogen in the water. On the other hand, lakes at higher elevations with deeper depths and prevailing forest cover in the catchment were less sensitive to water balance changes. These lakes, which are often of glacial origin, were characterized by lower evaporation losses and thus better water quality in terms of total nitrogen concentrations. Understanding connections between water balance and water quality is crucial for effective lake management and the preservation of freshwater ecosystems.
Impact of bathymetry on Indian Ocean circulation in a nested regional ocean model
Authors: Rahman Raheema , Rahaman Hasibur 
Published: April 2024

AbstractThe Regional Indian Ocean model based on Modular Ocean Model (MOM4p1) was used to understand the importance of a realistic representation of bathymetry on Ocean General Circulation. The model has 1/4° uniform horizontal resolution and is forced with Coordinated Ocean-Ice Reference Experiments (CORE-II) inter-annual forcing with two simulations named BLND (realistic bathymetry) and OM3 (smoothed bathymetry), which only differ in the representation of bathymetry for the years 1992–2005. We also used recent reanalysis products from ORAS5 and SODA3 and ADCP observation to compare the subsurface currents. We show that by the inclusion of realistic bathymetry, there is a significant improvement in the upper ocean salinity, temperature, and currents, particularly near the coast. The salinity and temperature of the upper ocean are very close to the observed value near the coast. The bias in the salinity and temperature was reduced to half in BLND simulation compared to OM3, which led to a more realistic East India Coastal Current (EICC). We show the first evidence of a basin-wide cyclonic gyre over the Bay of Bengal at 1000 m depth during spring, which is just opposite to that of a basin-wide anti-cyclonic gyre at the surface. We found the presence of poleward EICC during spring at 1000 m and 2000 m depth, which is opposite to that of the surface. The presence of this deeper EICC structure is completely absent during fall. We show the presence of a boundary current along the coast of Andaman and Nicobar Island at a depth of 2000 m. The observed Wyrtki Jet (WJ) magnitude and spatial structure are most realistically reproduced in BLND simulation as compared to OM3 simulations. Both ORAS5 and SODA reanalysis products underestimate the WJ magnitude. The presence of the Maldives Islands is responsible for the westward extent of Equatorial Under Current (EUC). The presence of Maldives also creates wakes on the leeward side in the EUC zonal current. During fall, EUC is better defined in the eastern Equatorial Indian Ocean and lies at a depth of between 50 and 100 m, unlike its spring counterpart, in which its core is located slightly deeper, between 100 and 150 m depth. During peak summer months, June–July, a strong eastward zonal jet is present at 1000 m depth, similar to Wyrtki Jet (WJ). Inter-monsoon Jets, i.e., spring and fall jets, are also seen but are in the opposite direction, i.e., westward, unlike eastward in WJ.
Expression levels and DNA methylation profiles of the growth gene SHOX in cartilage tissues and chondrocytes
Authors: Hattori Atsushi , Seki Atsuhito , Inaba Naoto , Nakabayashi Kazuhiko , Takeda Kazue , Tatsusmi Kuniko , Naiki Yasuhiro , Nakamura Akie , Ishiwata Keisuke , Matsumoto Kenji , Nasu Michiyo , Okamura Kohji , Michigami Toshimi , Katoh-Fukui Yuko , Umezawa Akihiro , Ogata Tsutomu , Kagami Masayo , Fukami Maki 
Published: April 2024

AbstractAll attempts to identify male-specific growth genes in humans have failed. This study aimed to clarify why men are taller than women. Microarray-based transcriptome analysis of the cartilage tissues of four adults and chondrocytes of 12 children showed that the median expression levels of SHOX, a growth gene in the pseudoautosomal region (PAR), were higher in male samples than in female samples. Male-dominant SHOX expression was confirmed by quantitative RT-PCR for 36 cartilage samples. Reduced representation bisulfite sequencing of four cartilage samples revealed sex-biased DNA methylation in the SHOX-flanking regions, and pyrosequencing of 22 cartilage samples confirmed male-dominant DNA methylation at the CpG sites in the SHOX upstream region and exon 6a. DNA methylation indexes of these regions were positively correlated with SHOX expression levels. These results, together with prior findings that PAR genes often exhibit male-dominant expression, imply that the relatively low SHOX expression in female cartilage tissues reflects the partial spread of X chromosome inactivation into PAR. Altogether, this study provides the first indication that sex differences in height are ascribed, at least in part, to the sex-dependent epigenetic regulation of SHOX. Our findings deserve further validation.
Association between Moraxella keratitis and advanced glycation end products
Authors: Inoue Hidenori , Toriyama Koji , Takahira Naoko , Murakami Shinobu , Miyamoto Hitoshi , Suzuki Takashi , Shiraishi Atsushi 
Published: April 2024

AbstractDiabetes mellitus is recognized as a major predisposing factor forMoraxellakeratitis. However, how diabetes mellitus contributes toMoraxellakeratitis remains unclear. In this study, we examinedMoraxellakeratitis; based on the findings, we investigated the impact of advanced glycation end products (AGEs) deposition in the cornea of individuals with diabetic mellitus on the adhesion ofMoraxellaisolates to the cornea. A retrospective analysis of 27 culture-proven cases ofMoraxellakeratitis at Ehime University Hospital (March 2006 to February 2022) was performed.Moraxellaisolates were identified using matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Among the patients, 30.4% had diabetes mellitus and 22.2% had the predominant ocular condition of using steroid eye drops. The species identified wereMoraxella nonliquefaciensin 59.3% andMoraxella lacunatain 40.7% of patients. To investigate the underlying mechanisms, we assessed the effects ofM. nonliquefaciensadherence to simian virus 40-immortalized human corneal epithelial cells (HCECs) with or without AGEs. The results demonstrated the number ofM. nonliquefaciensadhering to HCECs was significantly increased by adding AGEs compared with that in controls (p < 0.01). Furthermore, in the corneas of streptozotocin-induced diabetic C57BL/6 mice treated with or without pyridoxamine, an AGE inhibitor, the number ofM. nonliquefaciensadhering to the corneas of diabetic mice was significantly reduced by pyridoxamine treatment (p < 0.05). In conclusion, the development ofMoraxellakeratitis may be significantly influenced by the deposition of AGEs on the corneal epithelium of patients with diabetes mellitus.
A detailed 3D MRI brain atlas of the African lungfish Protopterus annectens
Authors: Lozano Daniel , López Jesús M. , Chinarro Adrián , Morona Ruth , Moreno Nerea 
Published: April 2024

AbstractThe study of the brain by magnetic resonance imaging (MRI) in evolutionary analyses is still in its incipient stage, however, it is particularly useful as it allows us to analyze detailed anatomical images and compare brains of rare or otherwise inaccessible species, evolutionarily contextualizing possible differences, while at the same time being non-invasive. A good example is the lungfishes, sarcopterygians that are the closest living relatives of tetrapods and thus have an interesting phylogenetic position in the evolutionary conquest of the terrestrial environment. In the present study, we have developed a three-dimensional representation of the brain of the lungfish Protopterus annectens together with a rostrocaudal anatomical atlas. This methodological approach provides a clear delineation of the major brain subdivisions of this model and allows to measure both brain and ventricular volumes. Our results confirm that lungfish show neuroanatomical patterns reminiscent of those of extant basal sarcopterygians, with an evaginated telencephalon, and distinctive characters like a small optic tectum. These and additional characters uncover lungfish as a remarkable model to understand the origins of tetrapod diversity, indicating that their brain may contain significant clues to the characters of the brain of ancestral tetrapods.
Blood urea nitrogen to serum albumin ratio as a new prognostic indicator in type 2 diabetes mellitus patients with chronic kidney disease
Authors: Liu Shizhen , Qiu Chuangye , Li Wenxia , Li Xingai , Liu Fanna , Hu Guoqiang 
Published: April 2024

AbstractChronic kidney disease (CKD) is often a common comorbidity in critically ill patients with type 2 diabetes mellitus (T2DM). This study explored the relationship between blood urea nitrogen to serum albumin ratio (BAR) and mortality in T2DM patients with CKD in intensive care unit (ICU). Patients were recruited from the Medical Information Mart database, retrospectively. The primary and secondary outcomes were 90-day mortality, the length of ICU stay, hospital mortality and 30-day mortality, respectively. Cox regression model and Kaplan–Meier survival curve were performed to explore the association between BAR and 90-day mortality. Subgroup analyses were performed to determine the consistency of this association. A total of 1920 patients were enrolled and divided into the three groups (BAR < 9.2, 9.2 ≤ BAR ≤ 21.3 and BAR > 21.3). The length of ICU stay, 30-day mortality, and 90-day mortality in the BAR > 21.3 group were significantly higher than other groups. In Cox regression analysis showed that high BAR level was significantly associated with increased greater risk of 90-day mortality. The adjusted HR (95%CIs) for the model 1, model 2, and model 3 were 1.768 (1.409–2.218), 1.934, (1.489–2.511), and 1.864, (1.399–2.487), respectively. Subgroup analysis also showed the consistency of results. The Kaplan–Meier survival curve analysis revealed similar results as well that BAR > 21.3 had lower 90-day survival rate. High BAR was significantly associated with increased risk of 90-day mortality. BAR could be a simple and useful prognostic tool in T2DM patients with CKD in ICU.
The voluntary utilization of visual working memory
Authors: Kvitelashvili Shalva , Kessler Yoav 
Published: April 2024

AbstractWhile a vast amount of research has focused on understanding the capacity limits of visual working memory (VWM), little is known about how VWM resources are employed in unforced behavior and how they correlate with individual capacity constraints. We present a novel, openly available, and easy-to-administer paradigm enabling participants to freely utilize their VWM capacity. Participants had to reconstruct an array of colored squares. In each trial, they were allowed to alternate between the memory array and the reconstruction screen as many times as they wished, each time choosing how many items to reconstruct. This approach allowed us to estimate the number of utilized items, as well as the accuracy of the reconstruction. In addition, VWM capacity was measured using a change detection task. In two experiments, we show that participants tend to under-utilize their VWM resources, performing well below their capacity limits. Surprisingly, while the extent to which participants utilized their VWM was highly reliable, it was uncorrelated with VWM capacity, suggesting that VWM utilization is limited due to strategic considerations rather than capacity limits.
Evaluating the influence of various friction stir processing strategies on surface integrity of hybrid nanocomposite Al6061
Authors: Molla Ramezani Navid , Davoodi Behnam 
Published: April 2024

AbstractTo fundamentally investigate the influence of different friction stir processing (FSP) strategies, namely raster, spiral, and parallel in various passes on the surface integrity of hybrid aluminum nanocomposites reinforced by titanium oxide (TiO2), silicon carbide (SiC), and zirconium oxide (ZrO2) nanoparticles, various examinations were conducted. The surface integrity, comprising microstructural characterization, elemental composition, surface topography, roughness, waviness, and microhardness was studied by different analyses, including scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDS), optical microscopy (OM), atomic force microscopy (AFM), and Vickers microhardness machine in different zones. Results demonstrated that surface integrity and quality are dependent on the type of FSP strategy. SEM images revealed that a homogeneous distribution of the nanoparticles in the matrix is obtainable by the parallel and raster FSP strategies. Roughness and waviness measurements illustrated that the surface topography of the hybrid nanocomposite was symmetrical and improved by raster strategy and TiO2 + ZrO2 nanoparticle reinforcement. Furthermore, the two-pass FSP improved the arithmetic average surface value (Ra) such that the Ra of two passes decreased by 32.5% compared to a single one. The mean microhardness in the spiral, raster, and parallel pass strategies increased by ~ 45%, 37%, and 31%, respectively.
A randomized controlled clinical trial examining the effects of Cordyceps militaris beverage on the immune response in healthy adults
Authors: Ontawong Atcharaporn , Pengnet Sirinat , Thim-Uam Arthid , Munkong Narongsuk , Narkprasom Nukrob , Narkprasom Kanjana , Kuntakhut Kullanat , Kamkeaw Natakorn , Amornlerdpison Doungporn 
Published: April 2024

AbstractCordyceps militaris (L.) Link (C. militaris) contains various beneficial substances, including polysaccharides (galactomannan), nucleotides (adenosine and cordycepin), cordycepic acid, amino acids, and sterols (ergosterol and beta-sitosterol). It also contains other essential nutrients, such as protein, vitamins (E, K, B1, B2, and B12), and minerals (potassium, sodium, calcium, magnesium, iron, zinc, and selenium). Due to the numerous health benefits of supplements and products containing C. militaris extract, their popularity has increased. However, the immunostimulant effect of C. militaris remains unclear. Therefore, this study developed a functional beverage from the submerged fermentation of C. militaris (FCM) and aimed to investigate the potential of FCM in healthy male and female volunteers in Phayao Province, Thailand. This study provides essential information for the development of healthy drink products. Healthy men and women were provided either FCM containing 2.85 mg of cordycepin or placebo for 8 weeks (n = 10 for each gender). The immune cell markers, immunoglobulins, and safety parameters were assessed initially at baseline and at 4 and 8 weeks. The NK cell activity markedly increased in the male FCM group from baseline (p = 0.049) to 4 weeks after receiving FCM. Compared with those in the placebo group, the NK activity in women who received FCM for 8 weeks significantly increased (p = 0.023) from baseline. Within-group analysis revealed that the IL-1β levels were markedly reduced in the male FCM group (p = 0.049). Furthermore, the IL-6 levels decreased from baseline in the female FCM group (p = 0.047). The blood sugar, lipid, and safety indices were not different between the experimental groups. FCM can potentially be developed as an immune-boosting supplement without liver, kidney, or blood component toxicity.
Interferon-gamma signaling promotes cartilage regeneration after injury
Authors: Kim Ju-Ryoung , Hong Bong-Ki , Pham Thi Hong Nhung , Kim Wan-Uk , Kim Hyun Ah 
Published: April 2024

AbstractOsteoarthritis is a common chronic disease and major cause of disability and chronic pain in ageing populations. In this pathology, the entire joint is involved, and the regeneration of articular cartilage still remains one of the main challenges. Here, we investigated the molecular mechanisms underlying cartilage regeneration in young mice using a full-thickness cartilage injury (FTCI) model. FTCI-induced cartilage defects were created in the femoral trochlea of young and adult C57BL/6 mice. To identify key molecules and pathways involved in the early response to cartilage injury, we performed RNA sequencing (RNA-seq) analysis of cartilage RNA at 3 days after injury. Young mice showed superior cartilage regeneration compared to adult mice after cartilage injury. RNA-seq analysis revealed significant upregulation of genes associated with the immune response, particularly in the IFN-γ signaling pathway and qRT-PCR analysis showed macrophage polarization in the early phase of cartilage regeneration (3 days) in young mice after injury, which might promote the removal of damaged or necrotic cells and initiate cartilage regeneration in response to injury. IFN-γR1- and IFN-γ-deficient mice exhibited impaired cartilage regeneration following cartilage injury. DMM-induced and spontaneous OA phenotypes were exacerbated in IFN-γR1−/− mice than in wild-type mice. Our data support the hypothesis that IFN-γ signaling is necessary for cartilage regeneration, as well as for the amelioration of post-traumatic and age-induced OA.
Assessing scale-dependency of climate risks in coffee-based agroforestry systems
Authors: Byrareddy Vivekananda M. , Kath Jarrod , Kouadio Louis , Mushtaq Shahbaz , Geethalakshmi Vellingiri 
Published: April 2024

AbstractAgroforestry is a management strategy for mitigating the negative impacts of climate and adapting to sustainable farming systems. The successful implementation of agroforestry strategies requires that climate risks are appropriately assessed. The spatial scale, a critical determinant influencing climate impact assessments and, subsequently, agroforestry strategies, has been an overlooked dimension in the literature. In this study, climate risk impacts on robusta coffee production were investigated at different spatial scales in coffee-based agroforestry systems across India. Data from 314 coffee farms distributed across the districts of Chikmagalur and Coorg (Karnataka state) and Wayanad (Kerala state) were collected during the 2015/2016 to 2017/2018 coffee seasons and were used to quantify the key climate drivers of coffee yield. Projected climate data for two scenarios of change in global climate corresponding to (1) current baseline conditions (1985–2015) and (2) global mean temperatures 2 °C above preindustrial levels were then used to assess impacts on robusta coffee yield. Results indicated that at the district scale rainfall variability predominantly constrained coffee productivity, while at a broader regional scale, maximum temperature was the most important factor. Under a 2 °C global warming scenario relative to the baseline (1985–2015) climatic conditions, the changes in coffee yield exhibited spatial-scale dependent disparities. Whilst modest increases in yield (up to 5%) were projected from district-scale models, at the regional scale, reductions in coffee yield by 10–20% on average were found. These divergent impacts of climate risks underscore the imperative for coffee-based agroforestry systems to develop strategies that operate effectively at various scales to ensure better resilience to the changing climate.
Functional characterization of plant specific Indeterminate Domain (IDD) transcription factors in tomato (Solanum lycopersicum L.)
Authors: Rajendran Sujeevan , Kang Yu Mi , Yang In Been , Eo Hye Bhin , Baek Kyung Lyung , Jang Seonghoe , Eybishitz Assaf , Kim Ho Cheol , Je Byeong Il , Park Soon Ju , Kim Chul Min 
Published: April 2024

AbstractPlant-specific transcription factors (TFs) are responsible for regulating the genes involved in the development of plant-specific organs and response systems for adaptation to terrestrial environments. This includes the development of efficient water transport systems, efficient reproductive organs, and the ability to withstand the effects of terrestrial factors, such as UV radiation, temperature fluctuations, and soil-related stress factors, and evolutionary advantages over land predators. In rice and Arabidopsis, INDETERMINATE DOMAIN (IDD) TFs are plant-specific TFs with crucial functions, such as development, reproduction, and stress response. However, in tomatoes, IDD TFs remain uncharacterized. Here, we examined the presence, distribution, structure, characteristics, and expression patterns of SlIDDs. Database searches, multiple alignments, and motif alignments suggested that 24 TFs were related to Arabidopsis IDDs. 18 IDDs had two characteristic C2H2 domains and two C2HC domains in their coding regions. Expression analyses suggest that some IDDs exhibit multi-stress responsive properties and can respond to specific stress conditions, while others can respond to multiple stress conditions in shoots and roots, either in a tissue-specific or universal manner. Moreover, co-expression database analyses suggested potential interaction partners within IDD family and other proteins. This study functionally characterized SlIDDs, which can be studied using molecular and bioinformatics methods for crop improvement.