bluuebunny/crossref_metadata_2025_split huggingface dataset:
Analogue magnitude representation of angles and its relation to geometric expertise
Authors: Hohol Mateusz , Szymanek Piotr , Cipora Krzysztof 
Published: April 2024

AbstractThe distance effect (comparing objects becomes easier with increasing differences in their magnitude) is observed in tasks ranging across domains, and its existence has been interpreted as evidence for analogue magnitude representation. Similarly, associations between response side and magnitude (faster left/right-sided responses to small/large objects, respectively) are observed across domains. We investigated the analogue processing of angles and the association between angle magnitude and response side in relation to geometric expertise. We compared the behavioural pattern of two groups—architects and controls—in a direct angle magnitude classification task (i.e., judge whether a presented angle was greater or less than 90°) and in an indirect task (i.e., judge whether an angle was drawn with a dashed or continuous line). We found a robust distance effect for reaction times and accuracy at the whole sample level and in each group separately. Architects revealed a smaller distance effect for accuracy than controls. This could be interpreted as an argument for a more precise analogue representation of angles in experts compared to non-experts. However, we did not find evidence for an association between angle magnitude and response side in any group.
Three-dimensional biphase fabric estimation from 2D images by deep learning
Authors: Chou Daniel , Etcheverry Matias , Arson Chloé 
Published: April 2024

AbstractA pruned VGG19 model subjected to Axial Coronal Sagittal (ACS) convolutions and a custom VGG16 model are benchmarked to predict 3D fabric descriptors from a set of 2D images. The data used for training and testing are extracted from a set of 600 3D biphase microstructures created numerically. Fabric descriptors calculated from the 3D microstructures constitute the ground truth, while the input data are obtained by slicing the 3D microstructures in each direction of space at regular intervals. The computational cost to train the custom ACS-VGG19 model increases linearly with p (the number of images extracted in each direction of space), and increasing p does not improve the performance of the model - or only does so marginally. The best performing ACS-VGG19 model provides a MAPE of 2 to 5% for the means of aggregate size, aspect ratios and solidity, but cannot be used to estimate orientations. The custom VGG16 yields a MAPE of 2% or less for the means of aggregate size, distance to nearest neighbor, aspect ratios and solidity. The MAPE is less than 3% for the mean roundness, and in the range of 5-7% for the aggregate volume fraction and the mean diagonal components of the orientation matrix. Increasing p improves the performance of the custom VGG16 model, but becomes cost ineffective beyond 3 images per direction. For both models, the aggregate volume fraction is predicted with less accuracy than higher order descriptors, which is attributed to the bias given by the loss function towards highly-correlated descriptors. Both models perform better to predict means than standard deviations, which are noisy quantities. The custom VGG16 model performs better than the pruned version of the ACS-VGG19 model, likely because it contains 3 times (p = 1) to 28 times (p = 10) less parameters than the ACS-VGG19 model, allowing better and faster cnvergence, with less data. The custom VGG16 model predicts the second and third invariants of the orientation matrix with a MAPE of 2.8% and 8.9%, respectively, which suggests that the model can predict orientation descriptors regardless of the orientation of the input images.
Application of optimized Kalman filtering in target tracking based on improved Gray Wolf algorithm
Authors: Pang Zheming , Wang Yajun , Yang Fang 
Published: April 2024

AbstractHigh precision is a very important index in target tracking. In order to improve the prediction accuracy of target tracking, an optimized Kalman filter approach based on improved Gray Wolf algorithm (IGWO-OKF) is proposed in this paper. Since the convergence speed of traditional Gray Wolf algorithm is slow, meanwhile, the number of gray wolves and the choice of the maximum number of iterations has a great influence on the algorithm, a nonlinear control parameter combination adjustment strategy is proposed. An improved Grey Wolf Optimization algorithm (IGWO) is formed by determining the best combination of adjustment parameters through the fastest iteration speed of the algorithm. The improved Grey Wolf Optimization algorithm (IGWO) is formed, and the process noise covariance matrix and observation noise covariance matrix in Kalman filter are optimized by IGWO. The proposed approach is applied into. The experiment results show that the proposed IGWO-OKF approach has low error, high accuracy and good prediction effect.
Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
Authors: ten Berk de Boer Esmee , Ameur Adam , Bunikis Ignas , Ek Marlene , Stattin Eva-Lena , Feuk Lars , Eisfeldt Jesper , Lindstrand Anna 
Published: April 2024

AbstractLong-read genome sequencing (lrGS) is a promising method in genetic diagnostics. Here we investigate the potential of lrGS to detect a disease-associated chromosomal translocation between 17p13 and the 19 centromere. We constructed two sets of phased and non-phased de novo assemblies; (i) based on lrGS only and (ii) hybrid assemblies combining lrGS with optical mapping using lrGS reads with a median coverage of 34X. Variant calling detected both structural variants (SVs) and small variants and the accuracy of the small variant calling was compared with those called with short-read genome sequencing (srGS). The de novo and hybrid assemblies had high quality and contiguity with N50 of 62.85 Mb, enabling a near telomere to telomere assembly with less than a 100 contigs per haplotype. Notably, we successfully identified the centromeric breakpoint of the translocation. A concordance of 92% was observed when comparing small variant calling between srGS and lrGS. In summary, our findings underscore the remarkable potential of lrGS as a comprehensive and accurate solution for the analysis of SVs and small variants. Thus, lrGS could replace a large battery of genetic tests that were used for the diagnosis of a single symptomatic translocation carrier, highlighting the potential of lrGS in the realm of digital karyotyping.
The alterations in nerve growth factor concentration in plasma and synovial fluid before and after total knee arthroplasty
Authors: Onodera Tomohiro , Iwasaki Koji , Matsuoka Masatake , Morioka Yasuhide , Matsubara Shinji , Kondo Eiji , Iwasaki Norimasa 
Published: April 2024

AbstractTotal knee arthroplasty (TKA) is an effective procedure for pain relief; however, the emergence of postsurgical pain remains a concern. In this study, we investigated the production of nerve growth factor (NGF) and mediators that affect NGF production and their function in the synovial fluid and plasma after TKA. This study included 19 patients (20 knees) who had rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), and knee osteoarthritis (OA) who underwent TKA, categorized into OA and non-OA groups. The levels of NGF, inflammatory cytokines, and lipid mediators were analyzed before and after surgery. The intraoperative synovial fluid NGF concentration was more than seven times higher in the non-OA group than in the OA group. The intra-articular NGF levels increased significantly by more than threefold postoperatively in the OA group but not in the non-OA group. Moreover, the levels of inflammatory cytokines and lipid mediators were increased in the synovial fluid of both groups. The intra-articular cytokines or NGF concentrations positively correlated with postoperative pain. Targeted NGF control has the potential to alleviate postsurgical pain in TKA, especially in patients with OA, emphasizing the importance of understanding NGF dynamics under different knee conditions.
Measurement of mass force field driving water refilling of cuttage
Authors: Xu Mingwei , Li Ke , Xue Yanling , Wang Feixiang , Liu Zhixuan , Xiao Tiqiao 
Published: April 2024

AbstractCuttage is a common plant cultivation method, and the key to its survival is the restoration of water refilling, which remains unclear up to now. We report 3D dynamic imaging of water refilling of cuttage without resorting to any contrast agent. Hydrodynamics of the refilled water flow over time reveals the existence of a unit mass force field with a gradient along the refilling direction, which means that cutting plants also have a gradient force field to drive the recovery of water refilling, as predicted by Cohesion-Tension theory in normal plants. We found that force fields of different functional regions are isolated and independently distributed, which is conducive to ensure the safety of water transmission. At the same time, we also found that there is a so-called "inchworm effect" in the mass force field, which contributes to the force transfer inside the cutting through local force accumulation. Results of this paper demonstrate that the developed method for the measurement of mass force field in-vivo is applicable to help decipher the mechanism of plant water refilling.
The principle of magnetic flux switch
Authors: Heidary Amir , Ghaffarian Niasar Mohammad , Popov Marjan 
Published: April 2024

AbstractThis paper introduces an innovative Magnetic Switch (MFS) designed to control and alter magnetic flux within energy system components, offering an alternative to conventional power electronic devices. The MFS comprises a low-current control coil, a control core, and a high-density magnetic flux-carrying main core combined with a main coil energy system. In this novel magnetic configuration, when a low-power current excites the control coil, the magnetic flux in the main core (supplied by the main coil) decreases to nearly zero. Conversely, when the control coil disconnects from the power source, the magnetic flux within the main core attains its maximum value. This operation positions the MFS as a groundbreaking concept within magnetic-based energy systems, akin to transistors in power electronics. The main outcomes of the MFS concept are that it can vary the magnetic flux of the main core in the large range, and it is a fast magnetic switch with a simple and low power loss control circuit and an independent control coil from the main coil. Analytical studies thoroughly elucidate the performance and advantages of this proposed magnetic switch, substantiated by Finite Element Method simulations and experimental prototype outcomes.
The dysregulation of biliary tract microflora is closely related to primary choledocholithiasis: a multicenter study
Authors: Xiao Min , Zhou Yankun , Wang Zhengfei , Dai Wenchao , Wang Di , Wan Zhenmiao , Chen Zhitao , Li Qiyong , Zheng ShuSen 
Published: April 2024

AbstractBile microecology changes play an important role in the occurrence and development of choledocholithiasis. At present, there is no clear report on the difference of bile microecology between asymptomatic patients with gallbladder polyps and choledocholithiasis. This study compared bile microecology between gallbladder polyp patients and patients with choledocholithiasis to identify risk factors for primary choledocholithiasis. This study was conducted in 3 hospitals in different regions of China. Bile samples from 26 patients with gallbladder polyps and 31 patients with choledocholithiasis were collected by laparoscopic cholecystectomy and endoscopic retrograde choledocholithiasis cholangiography (ERCP), respectively. The collected samples were used for 16S ribosomal RNA sequencing and liquid chromatography mass spectrometry analysis. The α-diversity of bile microecological colonies was similar between gallbladder polyp and choledocholithiasis, but the β-diversity was different. Firmicutes, Proteobacteri, Bacteroidota and Actinobacteriota are the most common phyla in the gallbladder polyp group and choledocholithiasis group. However, compared with the gallbladder polyp patients, the abundance of Actinobacteriota has significantly lower in the choledocholithiasis group. At the genera level, the abundance of a variety of bacteria varies between the two groups, and Enterococcus was significantly elevated in choledocholithiasis group. In addition, bile biofilm formation—Pseudomonas aeruginosa was more metabolically active in the choledocholithiasis group, which was closely related to stone formation. The analysis of metabolites showed that a variety of metabolites decreased in the choledocholithiasis group, and the concentration of beta-muricholic acid decreased most significantly. For the first time, our study compared the bile of gallbladder polyp patients with patients with choledocholithiasis, and suggested that the change in the abundance of Actinobacteriota and Enterococcus were closely related to choledocholithiasis. The role of Pseudomonas aeruginosa biofilm in the formation of choledocholithiasis was discovered for the first time, and some prevention schemes for choledocholithiasis were discussed, which has important biological and medical significance.
Impact of insertion into the left internal jugular vein in chemoport-associated infections: a retrospective single-center study of 1690 cases
Authors: Kim Gwon-Min , Song Seunghwan , Kim Do Young , Kim Soo Han , Lee Chung Won , Bae Miju , Kim Jong Won , Huh Up 
Published: April 2024

AbstractWe analyzed chemoport insertion procedures to evaluate infectious morbidity and factors causing infection. This single-center retrospective study included 1690 cases of chemoport implantation between January 2017 and December 2020. Overall, chemoports were inserted in 1582 patients. The average duration of chemoport use was 481 days (range 1–1794, median 309). Infections occurred in 80 cases (4.7%), with 0.098 per 1000 catheter-days. Among the 80 cases in which chemoports were removed because of suspected infection, bacteria were identified in 48 (60%). Significantly more cases of left internal jugular vein punctures were noted in the infected group (15 [18.8%] vs. 147 [9.1%]; p = 0.004). Pulmonary embolism was significantly different between the infection groups (3 [3.8%] vs. 19 (1.2%), p = 0.048). The hazard ratio was 2.259 (95% confidence interval [CI] 1.288–3.962) for the left internal jugular vein, 3.393 (95% CI 1.069–10.765) for pulmonary embolism, and 0.488 (95% CI 0.244–0.977) for chronic obstructive pulmonary disease. Using the right internal jugular vein rather than the left internal jugular vein when performing chemoport insertion might reduce subsequent infections.
Type 1 secretion necessitates a tight interplay between all domains of the ABC transporter
Authors: Anlauf Manuel T. , Bilsing Florestan L. , Reiners Jens , Spitz Olivia , Hachani Eymen , Smits Sander H. J. , Schmitt Lutz 
Published: April 2024

AbstractType I secretion systems (T1SS) facilitate the secretion of substrates in one step across both membranes of Gram-negative bacteria. A prime example is the hemolysin T1SS which secretes the toxin HlyA. Secretion is energized by the ABC transporter HlyB, which forms a complex together with the membrane fusion protein HlyD and the outer membrane protein TolC. HlyB features three domains: an N-terminal C39 peptidase-like domain (CLD), a transmembrane domain (TMD) and a C-terminal nucleotide binding domain (NBD). Here, we created chimeric transporters by swapping one or more domains of HlyB with the respective domain(s) of RtxB, a HlyB homolog from Kingella kingae. We tested all chimeric transporters for their ability to secrete pro-HlyA when co-expressed with HlyD. The CLD proved to be most critical, as a substitution abolished secretion. Swapping only the TMD or NBD reduced the secretion efficiency, while a simultaneous exchange abolished secretion. These results indicate that the CLD is the most critical secretion determinant, while TMD and NBD might possess additional recognition or interaction sites. This mode of recognition represents a hierarchical and extreme unusual case of substrate recognition for ABC transporters and optimal secretion requires a tight interplay between all domains.
The role of QRFP43 in the secretory activity of the gonadotrophic axis in female sheep
Authors: Przybył Bartosz Jarosław , Szlis Michał , Wysoczański Bartłomiej , Wójcik-Gładysz Anna 
Published: April 2024

AbstractIn mammals reproduction is regulated by many factors, among others by the peptides belonging to the RFamide peptide family. However, the knowledge concerning on the impact of recently identified member of this family (QRFP43) on the modulation of the gonadotrophic axis activity is still not fully understood and current research results are ambiguous. In the present study we tested the in vivo effect of QRFP43 on the secretory activity of the gonadotrophic axis at the hypothalamic-pituitary level in Polish Merino sheep. The animals (n = 48) were randomly divided into three experimental groups: controls receiving an icv infusion of Ringer-Locke solution, group receiving icv infusion of QRFP43 at 10 μg per day and 50 μg per day. All sheep received four 50 min icv infusions at 30 min intervals, on each of three consecutive days. Hypothalamic and pituitaries were collected and secured for further immunohistochemical and molecular biological analysis. In addition, during the experiment a blood samples have been collected for subsequent RIA determinations. QRFP43 was found to downregulate Kiss mRNA expression in the MBH and reduce the level of IR material in ME. This resulted in a reduction of GnRH IR material in the ME. QRFP43 increased plasma FSH levels while decreasing LH levels. Our findings indicate that QRFP43 inhibits the activity of the gonadotropic axis in the ovine at the level of the hypothalamus and may represent another neuromodulator of reproductive processes in animals.
Prevalence and patterns of third molar impaction among Ethiopians in Addis Ababa: a retrospective pilot study
Authors: Gebeyehu Tsedenia , Abaynew Yeshewas 
Published: April 2024

AbstractTooth impaction is a condition in which a tooth does not reach its normal position and is often observed in the third mandibular molar due to inadequate space. This study aimed to investigate the prevalence and configuration of the impacted third molars with an emphasis on angular orientations in a sample of the Ethiopian population. This cross-sectional study included a retrospective analysis of 291 patient records and orthopantomography data from the archives of a private dental clinic in Addis Ababa, during the study period from December 2020 to November 2022. Demographic details and data on the position and level of the impacted third molars were evaluated using the Winter classification. Data were analyzed for frequency distribution. The prevalence of impacted third molars was 22% (n = 64), with a greater incidence on the right side (60.9%) and a higher frequency in the mandible (67.2%). Vertical angulation (32.8%), followed by mesioangular angulation (31.2%), was the most common impaction pattern. The results highlight the need for improved treatment protocols for third molar impaction, emphasizing the prevalence in the mandible and the importance of addressing vertical impaction. Regular dental check-ups are essential for assessing third molar impaction and planning appropriate management. These data can inform policymaking and treatment considerations for impacted third molars in the Ethiopian population.
Exploring the preparation of YbBa2Cu3O7−y superconductor in flowing oxygen atmosphere
Authors: Wang Yanan , Zhang Zerong , Gao Zhan , Wang Lei , Wang Qiuliang 
Published: April 2024

AbstractREBCO has been used extensively as coated conductors applied to superconducting magnets due to its exceptional superconducting properties. As a REBCO superconductor, YbBa2Cu3O7−y (Yb123) has a low melting temperature, making it suitable for use as an intermediate medium connector while preparing the superconducting joint. However, there is still uncertainty about the formation mechanism of Yb123 and the synthesis of this superconductor has not been fully understood. Therefore, this study systematically investigated the phase transformation process of Yb123 during heat treatment in flowing oxygen. The results indicated that Yb123 sample with the highest phase purity could be obtained by annealing at 927 °C or 937 °C but not in between, respectively. Furthermore, a quantitative phase analysis revealed that the sample annealed at 937 °C had a phase purity greater than 80 wt%. Additionally, a strong c-axis texture was observed in the bulk Yb123 superconductor prepared at 937 °C. Meanwhile, the superconducting results revealed that the bulk sample’s Tc was 89.9 K, and its self-field critical current densities at 4.2 K and 77 K were 1.3 × 105 A/cm2 and 5.0 × 103 A/cm2, respectively. Based on the results mentioned above, the phase transformation process and formation mechanism of Yb123 in flowing oxygen were elaborated.
Evaluating cell culture reliability in pediatric brain tumor primary cells through DNA methylation profiling
Authors: Pedace Lucia , Pizzi Simone , Abballe Luana , Vinci Maria , Antonacci Celeste , Patrizi Sara , Nardini Claudia , Del Bufalo Francesca , Rossi Sabrina , Pericoli Giulia , Gianno Francesca , Besharat Zein Mersini , Tiberi Luca , Mastronuzzi Angela , Ferretti Elisabetta , Tartaglia Marco , Locatelli Franco , Ciolfi Andrea , Miele Evelina 
Published: April 2024

AbstractIn vitro models of pediatric brain tumors (pBT) are instrumental for better understanding the mechanisms contributing to oncogenesis and testing new therapies; thus, ideally, they should recapitulate the original tumor. We applied DNA methylation (DNAm) and copy number variation (CNV) profiling to characterize 241 pBT samples, including 155 tumors and 86 pBT-derived cell cultures, considering serum vs serum-free conditions, late vs early passages, and dimensionality (2D vs 3D cultures). We performed a t-SNE classification and identified differentially methylated regions in tumors compared to cell models. Early cell cultures recapitulate the original tumor, but serum media and 2D culturing were demonstrated to significantly contribute to the divergence of DNAm profiles from the parental ones. All divergent cells clustered together acquiring a common deregulated epigenetic signature suggesting a shared selective pressure. We identified a set of hypomethylated genes shared among unfaithful cells converging on response to growth factors and migration pathways, such as signaling cascade activation, tissue organization, and cellular migration. In conclusion, DNAm and CNV are informative tools that should be used to assess the recapitulation of pBT-cells from parental tumors.