The Brain Gene Registry: a data snapshot
Authors: Baldridge Dustin , Kaster Levi , Sancimino Catherine , Srivastava Siddharth , Molholm Sophie , Gupta Aditi , Oh Inez , Lanzotti Virginia , Grewal Daleep , Riggs Erin Rooney , Savatt Juliann M. , Hauck Rachel , Sveden Abigail ,   the Brain Gene Registry Consortium, Wasserstein Melissa , Sahin Mustafa , Wangler Michael F. , Schultz Robert , Gropman Andrea , Smith-Hicks Constance , Abbeduto Len , German Kendell , DaWalt Leann Smith , Neul Jeffrey L. , Walkley Steven U. , Storch Eric A. , Samaco Rodney , Izumi Kosuke , Pandey Juhi , Berger Seth I. , Cohen Julie S. , Shankar Suma , Doherty Dan , Mahida Sonal , Dies Kira A. , Clarke Megan , Taylor Alexa , Berl Madison , German Ryan , Nguyen Christina , Harris Holly K. , Hut Amanda , Gomez Vanessa , Arneson Carrie L. , Horn Isaac , Lavezzi Gabriel Damon , Grypp Diane , McNeil Devinae , White Cailin , Rusyniak Julie , Higareda Abigail Moradel , Deppen Paul , Bican Anna , Rockouski Madeline , Schneider Emily , Thompson Madeline , Kinard Jessica , Minor Brittany , Constantino John N. , Piven Joseph , Gurnett Christina A. , Chopra Maya , Hazlett Heather , Payne Philip R. O. 
Published: April 2024

AbstractMonogenic disorders account for a large proportion of population-attributable risk for neurodevelopmental disabilities. However, the data necessary to infer a causal relationship between a given genetic variant and a particular neurodevelopmental disorder is often lacking. Recognizing this scientific roadblock, 13 Intellectual and Developmental Disabilities Research Centers (IDDRCs) formed a consortium to create the Brain Gene Registry (BGR), a repository pairing clinical genetic data with phenotypic data from participants with variants in putative brain genes. Phenotypic profiles are assembled from the electronic health record (EHR) and a battery of remotely administered standardized assessments collectively referred to as the Rapid Neurobehavioral Assessment Protocol (RNAP), which include cognitive, neurologic, and neuropsychiatric assessments, as well as assessments for attention deficit hyperactivity disorder (ADHD) and autism spectrum disorder (ASD). Co-enrollment of BGR participants in the Clinical Genome Resource’s (ClinGen’s) GenomeConnect enables display of variant information in ClinVar. The BGR currently contains data on 479 participants who are 55% male, 6% Asian, 6% Black or African American, 76% white, and 12% Hispanic/Latine. Over 200 genes are represented in the BGR, with 12 or more participants harboring variants in each of these genes: CACNA1A, DNMT3A, SLC6A1, SETD5, and MYT1L. More than 30% of variants are de novo and 43% are classified as variants of uncertain significance (VUSs). Mean standard scores on cognitive or developmental screens are below average for the BGR cohort. EHR data reveal developmental delay as the earliest and most common diagnosis in this sample, followed by speech and language disorders, ASD, and ADHD. BGR data has already been used to accelerate gene-disease validity curation of 36 genes evaluated by ClinGen’s BGR Intellectual Disability (ID)-Autism (ASD) Gene Curation Expert Panel. In summary, the BGR is a resource for use by stakeholders interested in advancing translational research for brain genes and continues to recruit participants with clinically reported variants to establish a rich and well-characterized national resource to promote research on neurodevelopmental disorders.