bluuebunny/crossref_metadata_2025_split huggingface dataset:
First-Year Medical Students’ Perceptions of Stigma Toward People With Opioid Use Disorder Before and After an Educational Intervention
Authors: Graves Rachel L. , Shofer Frances S. , Kayser Joshua B. , Perrone Jeanmarie 
Published: March 2024

Background: Stigma among medical trainees toward people with opioid use disorder (OUD) compounds the problems associated with opioid addiction. People with OUD who experience overt and implicit stigma from healthcare providers are less likely to seek and receive treatment, further restricting their access to already limited resources. The objective of our study was to assess an educational strategy to mitigate stigma toward people with OUD among first-year medical students. Methods: This study assessed perceptions of stigma toward people with OUD among first-year medical students using an adaptation of a brief, validated opioid stigma scale before and after an educational intervention. The intervention consisted primarily of a recorded panel in which people with a history of OUD shared their experiences with stigma followed by small group discussions. Results: After the educational intervention, students were more likely to respond that (1) they believed most people held negative beliefs about people with OUD and (2) they personally disagreed with negative statements about people with OUD. Conclusions: Educational interventions addressing stigma toward people with OUD are potentially effective and should be integrated into medical curricula. Such interventions are a crucial part of the effort to improve the medical care of people with OUD.
Ebnerite and epiebnerite: NH4ZnPO4 dimorphs with zeolite-type frameworks from the Rowley mine, Arizona, USA
Authors: Kampf Anthony R. , Gu Xiangping , Yang Hexiong , Ma Chi , Marty Joe 
Published: March 2024

AbstractEbnerite and epiebnerite, both with the ideal formula NH4ZnPO4, are new mineral species from the Rowley mine, Maricopa County, Arizona, USA. They occur in an unusual bat-guano-related, post-mining assemblage of phases. Epiebnerite grows epitactically on ebnerite and replaces it. Ebnerite and epiebnerite are found in intimate association with alunite, halite, mimetite, newberyite, sampleite, struvite and wulfenite on hematite-rich quartz–baryte matrix. Crystals of ebnerite are colourless narrow prisms up to ~0.3 mm in length. The streak is white, lustre is vitreous, Mohs hardness is ~2, tenacity is brittle and fracture is splintery. The density is 2.78(2) g⋅cm–3. Ebnerite is optically uniaxial (–) with ω = 1.585(2) and ɛ = 1.575(2). Epiebnerite occurs as colourless prisms or blades, up to about 10 × 3 × 2 μm, in parallel growth forming ribs with serrated edges epitactic on ebnerite prisms. The streak is white, lustre is vitreous, Mohs hardness is probably ~2, tenacity is brittle. The calculated density is 2.851 g⋅cm–3. Epiebnerite is optically biaxial with all indices of refraction near 1.580. Electron microprobe analysis gave the empirical formula [(NH4)0.89K0.06]Σ0.95(Zn0.96Cu0.07)Σ1.03[(P0.97Si0.03)Σ1.00O4] for ebnerite and [(NH4)0.67K0.28]Σ0.95(Zn0.99Cu0.02)Σ1.02(P1.00O4) for epiebnerite. Ebnerite is hexagonal, P63, with a = 10.67051(16), c = 8.7140(2) Å, V = 859.25(3) Å3 and Z = 8. Epiebnerite is monoclinic, P21, with a = 8.796(16), b = 5.457(16), c = 8.960(16) Å, β = 90.34(6)°, V = 430.1(17) Å3 and Z = 4. The structures of ebnerite (R1 = 0.0372 for 1168 Io > 2σI reflections) and epiebnerite (known from synthetic monoclinic NH4ZnPO4) are zeolite-like frameworks based upon corner-sharing linkages between alternating ZnO4 and PO4 tetrahedra with channels in the frameworks hosting the NH4 groups. The two structures are topologically distinct. Ebnerite belongs to the family of ‘stuffed derivatives’ of tridymite, whereas epiebnerite possesses an ABW-type zeolite structure.
Deep self-supervised machine learning algorithms with a novel feature elimination and selection approaches for blood test-based multi-dimensional health risks classification
Authors: Tutsoy Onder , Koç Gizem Gul 
Published: March 2024

Abstract
Background
Blood test is extensively performed for screening, diagnoses and surveillance purposes. Although it is possible to automatically evaluate the raw blood test data with the advanced deep self-supervised machine learning approaches, it has not been profoundly investigated and implemented yet.

Results
This paper proposes deep machine learning algorithms with multi-dimensional adaptive feature elimination, self-feature weighting and novel feature selection approaches. To classify the health risks based on the processed data with the deep layers, four machine learning algorithms having various properties from being utterly model free to gradient driven are modified.

Conclusions
The results show that the proposed deep machine learning algorithms can remove the unnecessary features, assign self-importance weights, selects their most informative ones and classify the health risks automatically from the worst-case low to worst-case high values.
Whole-genome sequencing and analysis of Chryseobacterium arthrosphaerae from Rana nigromaculata
Authors: Zhu Lihong , Liu Hao , Li Xiaohui , Shi Yuefeng , Yin Xiaoliang , Pi Xionge 
Published: March 2024

AbstractChryseobacterium arthrosphaerae strain FS91703 was isolated from Rana nigromaculata in our previous study. To investigate the genomic characteristics, pathogenicity-related genes, antimicrobial resistance, and phylogenetic relationship of this strain, PacBio RS II and Illumina HiSeq 2000 platforms were used for the whole genome sequencing. The genome size of strain FS91703 was 5,435,691 bp and GC content was 37.78%. A total of 4,951 coding genes were predicted; 99 potential virulence factors homologs were identified. Analysis of antibiotic resistance genes revealed that strain FS91703 harbored 10 antibiotic resistance genes in 6 categories and 2 multidrug-resistant efflux pump genes, including adeG and farA. Strain FS91703 was sensitive to β-lactam combination drugs, cephem, monobactam and carbapenems, intermediately resistant to phenicol, and resistant to penicillin, aminoglycosides, tetracycline, fluoroquinolones, and folate pathway inhibitors. Phylogenetic analysis revealed that strain FS91703 and C. arthrosphaerae CC-VM-7T were on the same branch of the phylogenetic tree based on 16 S rRNA; the ANI value between them was 96.99%; and the DDH values were 80.2, 72.2 and 81.6% by three default calculation formulae. These results suggested that strain FS91703 was a species of C. arthrosphaerae. Pan-genome analysis showed FS91703 had 566 unique genes compared with 13 other C. arthrosphaerae strains, and had a distant phylogenetic relationship with the other C. arthrosphaerae strains of the same branch in phylogenetic tree based on orthologous genes. The results of this study suggest that strain FS91703 is a multidrug-resistant and highly virulent bacterium, that differs from other C. arthrosphaerae strains at the genomic level. The knowledge about the genomic characteristics and antimicrobial resistance of strain FS91703 provides valuable insights into this rare species, as well as guidance for the treatment of the disease caused by FS91703 in Rana nigromaculata.
‘Fertile island’ effects on the soil microbial community beneath the canopy of Tetraena mongolica, an endangered and dominant shrub in the West Ordos Desert, North China
Authors: Liu Zhangkai , Shao Yuying , Cui Qingguo , Ye Xuehua , Huang Zhenying 
Published: March 2024

Abstract
Background
The fertile islands formed by shrubs are major drivers of the structure and function of desert ecosystems, affecting seedling establishment, plant–plant interactions, the diversity and productivity of plant communities, and microbial activity/diversity. Although an increasing number of studies have shown the critical importance of soil microbes in fertile island formation, how soil microbial community structure and function are affected by the different fertile island effect intensities is still unknown. As an endangered and dominant shrub species in the West Ordos Desert, Tetraena mongolica was selected for further exploration of its fertile island effect on the soil microbial community in the present study to test the following two hypotheses: (1) T. mongolica shrubs with different canopy sizes exert fertile island effects of different strengths; (2) the soil microbial community structure and function beneath the T. mongolica canopy are affected by the fertile island, and the strength of these effects varies depending on the shrub canopy size.

Results
The contents of soil total nitrogen (TN) and available phosphorus (AVP) were significantly greater beneath T. mongolica shrub canopy than outside the shrub canopy. With increasing shrub canopy size, the enrichment of soil TN and AVP increased, indicating a stronger fertile island effect. The structure and function of soil microbial communities, including fungal, archaeal and bacterial communities, are affected by the fertile island effect. An increase in canopy size increased the relative abundance of Ascomycota (Fungi) and Thaumarchaeota (Archaea). For the soil microbial functional groups, the relative abundance of endophytes in the fungal functional groups; steroid hormone biosynthesis, sphingolipid metabolism, and steroid biosynthesis genes in the bacterial functional groups; and nonhomologous end-joining and bisphenol degradation functional genes in the archaeal functional groups increased significantly with increasing T. mongolica canopy size.

Conclusions
These results revealed that T. mongolica had a fertile island effect, which affected the soil microbial community structure and functions, and that the fertile island effect might increase with increasing shrub canopy size. The fertile island effect may strengthen the interaction between T. mongolica shrubs and microbes, which may be beneficial to the growth and maintenance of T. mongolica.
The growth, nutrient uptake and fruit quality in four strawberry cultivars under different Spectra of LED supplemental light
Authors: Roosta Hamid Reza , Bikdeloo Mahdi , Ghorbanpour Mansour 
Published: March 2024

AbstractAn experiment was conducted in a greenhouse to determine the effects of different supplemental light spectra on the growth, nutrient uptake, and fruit quality of four strawberry cultivars. The plants were grown under natural light and treated with blue (460 nm), red (660 nm), and red/blue (3:1) lights. Results showed that the “Parous” and “Camarosa” had higher fresh and dry mass of leaves, roots, and crowns compared to the “Sabrina” and “Albion”. The use of artificial LED lights improved the vegetative growth of strawberry plants. All three supplemental light spectra significantly increased the early fruit yield of cultivars except for “Parous”. The red/blue supplemental light spectrum also increased the fruit mass and length of the “Albion”. Supplemental light increased the total chlorophyll in “Camarosa” and “Albion”, as well as the total soluble solids in fruits. The “Albion” had the highest concentration of fruit anthocyanin, while the “Sabrina” had the lowest. The use of supplemental light spectra significantly increased the fruit anthocyanin concentration in all cultivars. Without supplemental light, the “Camarosa” had the lowest concentration of K and Mg, which increased to the highest concentration with the use of supplemental light spectra. All three spectra increased Fe concentration to the highest value in the “Sabrina”, while only the red/blue light spectrum was effective on the “Camarosa”. In conclusion, the use of supplemental light can increase the yield and fruit quality of strawberries by elevating nutrients, chlorophyll, and anthocyanin concentrations in plants.
A case study: lessons learned from online tutorial to improve practice readiness for family medicine residents in Palestine
Authors: Colton Benjamin , Saudi Lubna , Smalldridge Ann , Spicer Nicki , Zink Therese 
Published: March 2024

Abstract
Background
Geopolitical and socioeconomic challenges limit faculty development and clinical teaching in Palestine and many other developing countries. The first, and still only, Family Medicine (FM) residency program is a four-year program based out of An-Najah University in the West Bank. Training in primary care clinics occurs in the final two years and there are many challenges to adequate supervision in the clinical setting that were exacerbated during the pandemic. To improve the readiness for practice skills of 13 Palestinian FM residents a three-month tutorial program was organized in 2020. A nongovernmental organization (NGO) that has worked to support Family Medicine development in the region engaged experienced British and American General Practitioners trained as tutors to offer online tutorials. We examined the program as a case study to understand the factors that facilitated or impaired a positive virtual learning environment in a middle/low income country.

Methods
The tutors and residents were divided into groups and met virtually between June and September 2020. Evaluations and session reports collected during the program, the text of an online chat, and responses to an online survey two years later were collected. Using thematic analysis techniques, we evaluated the value for the residents at the time and two years later and identified factors that facilitated or impaired a positive virtual learning environment.

Results
Themes of knowledge, skills, attitudes, cultural disconnects, and tutorial logistics emerged. The group with the most stable tutor pairing, including one Arabic-speaker familiar with the context, was the most engaged. The all-female group formed a chat group to share real-time case questions during clinical practice and focused on skills (e.g. conducting a thorough medication review) and attitudes (e.g. open to sharing and discussing uncertainties). Other groups were less cohesive.

Conclusions
Transnational tutorials that focused on clinical thinking and decision-making skills were most successful when the tutorial pair was stable, offered familiarity with the language and addressed cultural differences. Intrinsic factors such as lacking the motivation to participate and extrinsic factors such as unstable internet and rolling electric cuts, and clinical structures that made applying new skills challenging were more difficult to address but must be considered.
Acceptance of assisted partner notification among HIV-positive adults with severe mental illness at a national referral hospital in Uganda: a cross-sectional study
Authors: Nante Rachel Wangi , Muyinda Herbert , Kiweewa John M. , Ndagire Regina , Ssendikwanawa Emmanuel , Ojiambo Kevin Ouma , Nangendo Joanita , Nakku Juliet , Semitala Fred C. 
Published: March 2024

Abstract
Background
HIV mostly affects people with severe mental illnesses (SMIs) than the general population. In 2015, the World Health Organization (WHO) introduced assisted partner notification (APN) as a strategy to increase HIV testing. Although research has demonstrated the effectiveness of APN in the general population, its use among people living with HIV (PLHIV) who have SMI is not well understood. This study sought to determine the acceptance of the APN strategy among PLHIV who had a diagnosis of SMI.

Methods
This study used a cross-sectional study design that was retrospective to determine acceptance of APN among PLHIV with a documented diagnosis of SMI. We enrolled participants with a diagnosis of both HIV and SMI from August 2018 to January 2022, attending the HIV clinic at Butabika Hospital. We used pretested questionnaires to extract participants’ demographic and clinical data from their existing clinical charts, antiretroviral therapy (ART) registers and APN registers. We defined acceptance of APN as the number of PLHIV with SMI diagnoses who agreed to provide information about their sexual partners. We used modified Poisson regression analysis to assess the factors associated with the acceptance of APN.

Results
A total of 125 participants were enrolled, of whom 83 (66.4%) were female. The median age was 30 (interquartile range (IQR) (25–34)), and 41 (33%) of them accepted APN (95% CI: 25.05–41.61). Receipt of at least three counselling sessions before enrollment in APN (aPR = 1.8, 95% CI: 1.72–1.98) was the most significant factor associated with increased acceptance of APN. Poor adherence to ART (aPR = 0.62, 95% CI: 0.54–0.80), being escorted to hospital by a distant relative (aPR = 0.55, 95% CI: 0.39–0.80), being married/cohabiting (aPR = 0.65, 95% CI: 0.60–0.81), and being a Seventh Day Adventist (SDA) (aPR = 0.53, 95% CI: 0.45–0.71) or Pentecostal (aPR = 0.44, 95% CI: 0.22–0.98) by faith were associated with reduced acceptance of APN.

Conclusion and recommendation
The acceptance of APN is low among PLHIV with a diagnosis of SMI. More structured counselling would facilitate earlier identification of undiagnosed HIV-positive partners. We recommend a follow-up study to compare acceptance of APN among PLHIV with SMI and those without SMI.
Effect of strontium on transcription factors identified by transcriptome analyses of bovine ruminal epithelial cells
Authors: Tan Panpan , Wang Yazhou , Mei Linshan , Loor Juan J. , Zhao Chenxu , Kong Yezi , Zeng Fangyuan , Zhao Baoyu , Wang Jianguo 
Published: March 2024

Abstract
Background
Strontium (Sr) has similar physicochemical properties as calcium (Ca) and is often used to evaluate the absorption of this mineral. Because the major route of Ca absorption in the bovine occurs in the rumen, it is essential to understand whether Sr impacts the ruminal epithelial cells and to what extent.

Results
In the present study, RNA sequencing and assembled transcriptome assembly were used to identify transcription factors (TFs), screening and bioinformatics analysis in bovine ruminal epithelial cells treated with Sr. A total of 1405 TFs were identified and classified into 64 families based on an alignment of conserved domains. A total of 174 differently expressed TFs (DE-TFs) were increased and 52 DE-TFs were decreased; the biological process-epithelial cell differentiation was inhibited according to the GSEA-GO analysis of TFs; The GO analysis of DE-TFs was enriched in the DNA binding. Protein-protein interaction network (PPI) found 12 hubs, including SMAD4, SMAD2, SMAD3, SP1, GATA2, NR3C1, PPARG, FOXO1, MEF2A, NCOA2, LEF1, and ETS1, which verified genes expression levels by real-time PCR.

Conclusions
In this study, SMAD2, PPARG, LEF1, ETS1, GATA2, MEF2A, and NCOA2 are potential candidates that could be targeted by Sr to mediate cell proliferation and differentiation, as well as lipid metabolism. Hence, these results enhance the comprehension of Sr in the regulation of transcription factors and provide new insight into the study of Sr biological function in ruminant animals.
Characteristics of intestinal bacteriophages and their relationship with Bacteria and serum metabolites during quail sexual maturity transition
Authors: Xiong Xinwei , Gong Jishang , Lu Tian , Yuan Liuying , Lan Yuehang , Tu Xutang 
Published: March 2024

Abstract
Background
Bacteriophages are prokaryotic viruses that rank among the most abundant microbes in the gut but remain among the least understood, especially in quails. In this study, we surveyed the gut bacteriophage communities in 22 quails at different ages (days 20 and 70) using shotgun metagenomic sequencing. We then systematically evaluated the relationships with gut bacteria and host serum metabolites.

Results
We discovered that Myoviridae and Siphoviridae were the dominant bacteriophage families in quails. Through a random forest and LEfSe analysis, we identified 23 differential bacteriophages with overlapping presence. Of these, 21 bacteriophages (e.g., Enterococcus phage IME-EFm5 and Enterococcus phage IME-EFm1) showed higher abundances in the day 20 group, while two bacteriophages (Bacillus phage Silence and Bacillus virus WPh) were enriched in the day 70 group. These key bacteriophages can serve as biomarkers for quail sexual maturity. Additionally, the differential bacteriophages significantly correlated with specific bacterial species and shifts in the functional capacities of the gut microbiome. For example, Enterococcus phages (e.g., Enterococcus phage EFP01, Enterococcus phage IME-EFm5, and Enterococcus phage IME-EFm1) were significantly (P < 0.001, FDR) and positively correlated with Enterococcus faecalis. However, the relationships between the host serum metabolites and either bacteriophages or bacterial species varied. None of the bacteriophages significantly (P > 0.05, FDR) correlated with nicotinamide riboside and triacetate lactone. In contrast, some differential bacterial species (e.g., Christensenella massiliensis and Bacteroides neonati) significantly (P < 0.05, FDR) correlated with nicotinamide riboside and triacetate lactone. Furthermore, characteristic successional alterations in gut bacteriophages, bacteria, and host serum metabolites across different ages highlighted a sexual maturity transition coexpression network.

Conclusion
This study improves our understanding of the gut bacteriophage characteristics in quails and offers profound insights into the interactions among gut bacteriophages, bacteria, and host serum metabolites during the quail’s sexual maturity transition.
Circulating miRNAs associate with historical childhood asthma hospitalization in different serum vitamin D groups
Authors: Hong Xiaoning , Jiang Mingye , Kho Alvin T. , Tiwari Anshul , Guo Haiyan , Wang Alberta L. , McGeachie Michael J. , Weiss Scott T. , Tantisira Kelan G. , Li Jiang 
Published: March 2024

Abstract
Background
Vitamin D may help to alleviate asthma exacerbation because of its anti-inflammation effect, but the evidence is inconsistent in childhood asthma. MiRNAs are important mediators in asthma pathogenesis and also excellent non-invasive biomarkers. We hypothesized that circulating miRNAs are associated with asthma exacerbation and modified by vitamin D levels.

Methods
We sequenced baseline serum miRNAs from 461 participants in the Childhood Asthma Management Program (CAMP). Logistic regression was used to associate miRNA expression with asthma exacerbation through interaction analysis first and then stratified by vitamin D insufficient and sufficient groups. Microarray from lymphoblastoid B-cells (LCLs) treated by vitamin D or sham of 43 subjects in CAMP were used for validation in vitro. The function of miRNAs was associated with gene modules by weighted gene co-expression network analysis (WGCNA).

Results
We identified eleven miRNAs associated with asthma exacerbation with vitamin D effect modification. Of which, five were significant in vitamin D insufficient group and nine were significant in vitamin D sufficient group. Six miRNAs, including hsa-miR-143-3p, hsa-miR-192-5p, hsa-miR-151a-5p, hsa-miR-24-3p, hsa-miR-22-3p and hsa-miR-451a were significantly associated with gene modules of immune-related functions, implying miRNAs may mediate vitamin D effect on asthma exacerbation through immune pathways. In addition, hsa-miR-143-3p and hsa-miR-451a are potential predictors of childhood asthma exacerbation at different vitamin D levels.

Conclusions
miRNAs are potential mediators of asthma exacerbation and their effects are directly impacted by vitamin D levels.