bluuebunny/crossref_metadata_2025_split huggingface dataset:
Characteristics of germline DNA damage response gene mutations in ovarian cancer in Southwest China
Authors: Fu Kaiyu , Li Qingli , Wang Jie , Zhang Mengpei , Yan Xinyu , Li Kemin , Song Liang , Zhong Lan , Ma Yu , Chen Jinghong , Zeng Jing , Wang Danqing , Shao Di , Zhu Shida , Yin Rutie 
Published: March 2024

AbstractDNA damage response (DDR) pathways are responsible for repairing endogenous or exogenous DNA damage to maintain the stability of the cellular genome, including homologous recombination repair (HRR) pathway, mismatch repair (MMR) pathway, etc. In ovarian cancer, current studies are focused on HRR genes, especially BRCA1/2, and the results show regional and population differences. To characterize germline mutations in DDR genes in ovarian cancer in Southwest China, 432 unselected ovarian cancer patients underwent multi-gene panel testing from October 2016 to October 2020. Overall, deleterious germline mutations in DDR genes were detected in 346 patients (80.1%), and in BRCA1/2 were detected in 126 patients (29.2%). The prevalence of deleterious germline mutations in BRCA2 is higher than in other studies (patients are mainly from Eastern China), and so is the mismatch repair genes. We identified three novel BRCA1/2 mutations, two of which probably deleterious (BRCA1 p.K1622* and BRCA2 p.L2987P). Furthermore, we pointed out that deleterious mutations of FNACD2 and RECQL4 are potential ovarian cancer susceptibility genes and may predispose carriers to ovarian cancer. In conclusion, our study highlights the necessity of comprehensive germline mutation detection of DNA damage response genes in ovarian cancer patients, which is conducive to patient management and genetic counseling.
Limited increases in Arctic offshore oil and gas production with climate change and the implications for energy markets
Authors: Zhang Ying , Msangi Siwa , Edmonds James , Waldhoff Stephanie 
Published: March 2024

AbstractClimate change impacts on sea ice thickness is opening access to offshore Arctic resources. The degree to which these resources are exploited will depend on sea-ice conditions, technology costs, international energy markets, and the regulatory environment. We use an integrated human-Earth system model, GCAM, to explore the effects of spatial–temporal patterns of sea-ice loss under climate change on future Arctic offshore oil and gas extraction, considering interactions with global energy markets and emission reduction scenarios. We find that under SSP5, a “fossil-fueled development” scenario, the effects of sea-ice loss are larger for Arctic offshore oil production than gas. Under SSP5, future extraction of Arctic offshore oil and gas through 2100 adds roughly 0.8–2.6 EJ/year to oil and gas markets but does not have large impacts on global oil and gas markets. Surprisingly, a low-carbon scenario results in greater Arctic offshore oil production to offset the more emissions-intensive unconventional oil production.
Binocular rivalry reveals differential face processing in congenital prosopagnosia
Authors: Halder Theresa , Ludwig Karin , Schenk Thomas 
Published: March 2024

AbstractCongenital Prosopagnosia (CP) is an innate impairment in face perception with heterogeneous characteristics. It is still unclear if and to what degree holistic processing of faces is disrupted in CP. Such disruption would be expected to lead to a focus on local features of the face. In this study, we used binocular rivalry (BR) to implicitly measure face perception in conditions that favour holistic or local processing. The underlying assumption is that if stimulus saliency affects the perceptual dominance of a given stimulus in BR, one can deduce how salient a stimulus is for a given group (here: participants with and without CP) based on the measured perceptual dominance. A further open question is whether the deficit in face processing in CP extends to the processing of the facial display of emotions. In experiment 1, we compared predominance of upright and inverted faces displaying different emotions (fearful, happy, neutral) vs. houses between participants with CP (N = 21) and with normal face perception (N = 21). The results suggest that CP observers process emotions in faces automatically but rely more on local features than controls. The inversion of faces, which is supposed to disturb holistic processing, affected controls in a more pronounced way than participants with CP. In experiment 2, we introduced the Thatcher effect in BR by inverting the eye and mouth regions of the presented faces in the hope of further increasing the effect of face inversion. However, our expectations were not borne out by the results. Critically, both experiments showed that inversion effects were more pronounced in controls than in CP, suggesting that holistic face processing is less relevant in CP. We find BR to be a useful implicit test for assessing visual processing specificities in neurological participants.
In silico approaches for the identification of potential allergens among hypothetical proteins from Alternaria alternata and its functional annotation
Authors: Sundararaj Rajamanikandan , Mathimaran Amala , Prabhu Dhamodharan , Ramachandran Balajee , Jeyaraman Jeyakanthan , Muthupandian Saravanan , Asmelash Tsehaye 
Published: March 2024

AbstractDirect exposure to the fungal species Alternaria alternata is a major risk factor for the development of asthma, allergic rhinitis, and inflammation. As of November 23rd 2020, the NCBI protein database showed 11,227 proteins from A. alternata genome as hypothetical proteins (HPs). Allergens are the main causative of several life-threatening diseases, especially in fungal infections. Therefore, the main aim of the study is to identify the potentially allergenic inducible proteins from the HPs in A. alternata and their associated functional assignment for the complete understanding of the complex biological systems at the molecular level. AlgPred and Structural Database of Allergenic Proteins (SDAP) were used for the prediction of potential allergens from the HPs of A. alternata. While analyzing the proteome data, 29 potential allergens were predicted by AlgPred and further screening in SDAP confirmed the allergic response of 10 proteins. Extensive bioinformatics tools including protein family classification, sequence-function relationship, protein motif discovery, pathway interactions, and intrinsic features from the amino acid sequence were used to successfully predict the probable functions of the 10 HPs. The functions of the HPs are characterized as chitin-binding, ribosomal protein P1, thaumatin, glycosyl hydrolase, and NOB1 proteins. The subcellular localization and signal peptide prediction of these 10 proteins has further provided additional information on localization and function. The allergens prediction and functional annotation of the 10 proteins may facilitate a better understanding of the allergenic mechanism of A. alternata in asthma and other diseases. The functional domain level insights and predicted structural features of the allergenic proteins help to understand the pathogenesis and host immune tolerance. The outcomes of the study would aid in the development of specific drugs to combat A. alternata infections.
Extracellular vesicles secreted from mesenchymal stem cells ameliorate renal ischemia reperfusion injury by delivering miR-100-5p targeting FKBP5/AKT axis
Authors: Chen Guo , Li Xinyuan , Zhou Xiang , Li Yang , Yu Haitao , Peng Xiang , Bai Xuesong , Zhang Chunlin , Feng Zhenwei , Mei Yuhua , Li Li , Liu Yu , Gou Xin , Jiang Yuanbin 
Published: March 2024

AbstractThe incidence of acute kidney injury (AKI) due to ischemia–reperfusion (IR) injury is increasing. There is no effective treatment for AKI, and because of this clinical challenge, AKI often progresses to chronic kidney disease, which is closely associated with poor patient outcomes and high mortality rates. Small extracellular vesicles from human umbilical cord mesenchymal stem cells (hUCMSC-sEVs) play increasingly vital roles in protecting tissue function from the effects of various harmful stimuli owing to their specific biological features. In this study, we found that miR-100-5p was enriched in hUCMSC-sEVs, and miR-100-5p targeted FKBP5 and inhibited HK-2 cell apoptosis by activating the AKT pathway. HK-2 cells that were exposed to IR injury were cocultured with hUCMSC-sEVs, leading to an increase in miR-100-5p levels, a decrease in FKBP5 levels, and an increase in AKT phosphorylation at Ser 473 (AKT-473 phosphorylation). Notably, these effects were significantly reversed by transfecting hUCMSCs with an miR-100-5p inhibitor. Moreover, miR-100-5p targeted FKBP5, as confirmed by a dual luciferase reporter assay. In vivo, intravenous infusion of hUCMSC-sEVs into mice suffering from IR injury resulted in significant apoptosis inhibition, functional maintenance and renal histological protection, which in turn decreased FKBP5 expression levels. Overall, this study revealed an effect of hUCMSC-sEVs on inhibiting apoptosis; hUCMSC-sEVs reduced renal IR injury by delivering miR-100-5p to HK-2 cells, targeting FKBP5 and thereby promoting AKT-473 phosphorylation to activate the AKT pathway. This study provides novel insights into the role of hUCMSC-sEVs in the treatment of AKI.
Changes in use and outcomes after fibrinogen concentrate insurance coverage for critical obstetrical hemorrhage: a nationwide questionnaire survey in Japan
Authors: Nii Masafumi , Oda Tomoaki , Morikawa Mamoru , Nakabayashi Yasushi , Adachi Tomoko , Kobayashi Takao , Itakura Atsuo 
Published: March 2024

AbstractFibrinogen concentrate (FC) for acquired hypofibrinogenemia associated with critical obstetrical hemorrhage (COH) was covered by public medical insurance in September 2021 in Japan. We aimed to investigate changes in the policy of FC use and its effect on COH after insurance coverage. A primary survey covering September 2020 to August 2021 and a secondary survey covering September 2021 to August 2022 were conducted at 428 higher-level medical facilities. We investigated the policy of FC use in transfusion strategy and the maternal outcomes in COH. Among the hospitals that responded to both surveys, the number of facilities that use FC increased from 51.5 (101/196) to 78.6% (154/196) (P < 0.0001). The number of COH cases treated using FC increased from 14.3 to 24.3% (P < 0.0001) and that transfused with ≥ 10 units of red blood cells (RBCs) decreased from 36.8 to 29.8% (P = 0.001). The incidence of pulmonary edema reduced by 3.7–2.0% (P = 0.021), and transfusion-induced allergy by 1.9–0.7% (P = 0.008). No changes were observed in the incidence of thromboembolism, arterial embolization, or hysterectomy. The increased use of FC after insurance coverage led to changes in the transfusion strategy, which may be associated with decreases in transfusions of RBCs, pulmonary edema, and transfusion-induced allergies.
Gait-related beta-gamma phase amplitude coupling in the subthalamic nucleus of parkinsonian patients
Authors: Farokhniaee AmirAli , Palmisano Chiara , Del Vecchio Del Vecchio Jasmin , Pezzoli Gianni , Volkmann Jens , Isaias Ioannis U. 
Published: March 2024

AbstractAnalysis of coupling between the phases and amplitudes of neural oscillations has gained increasing attention as an important mechanism for large-scale brain network dynamics. In Parkinson’s disease (PD), preliminary evidence indicates abnormal beta-phase coupling to gamma-amplitude in different brain areas, including the subthalamic nucleus (STN). We analyzed bilateral STN local field potentials (LFPs) in eight subjects with PD chronically implanted with deep brain stimulation electrodes during upright quiet standing and unperturbed walking. Phase-amplitude coupling (PAC) was computed using the Kullback-Liebler method, based on the modulation index. Neurophysiological recordings were correlated with clinical and kinematic measurements and individual molecular brain imaging studies ([123I]FP-CIT and single-photon emission computed tomography). We showed a dopamine-related increase in subthalamic beta-gamma PAC from standing to walking. Patients with poor PAC modulation and low PAC during walking spent significantly more time in the stance and double support phase of the gait cycle. Our results provide new insights into the subthalamic contribution to human gait and suggest cross-frequency coupling as a gateway mechanism to convey patient-specific information of motor control for human locomotion.
Associations between dietary inflammatory index and stroke risk: based on NHANES 2005–2018
Authors: Huang Ruixian , Lai Fengxia , Zhao Le , Zhang Jingjing , Chen Hao , Wang Shuang , Chen Canjin , Wang Wenhao , Mai Zhenhua , Ding Yuanlin , Kong Danli 
Published: March 2024

AbstractThe dietary inflammatory index (DII) is a measure of the inflammatory potential of the diet and is closely associated with insulin resistance (IR) and stroke. And IR may play an important role in the development of stroke. Therefore, this study aimed to evaluate the relationship between DII and stroke risk while delving into the potential role of IR in this association. We analyzed data from the National Health and Nutrition Examination Survey (NHANES) from 2005 to 2018, performing weighted univariate analyses, logistic regression, and mediation analyses. At baseline, 3.89% of participants developed stroke, and we observed stroke patients exhibited higher DII scores. After adjusting for covariates, compared to participants in the first quartile of DII scores, those in the third quartile and fourth quartile had increased odds of experiencing a stroke (OR: 1.78, 95% CI: 1.18–2.68) and (OR: 1.70, 95% CI: 1.16–2.50), respectively. Moreover, a significant dose–response relationship was observed (P-trend < 0.05). However, there was no observed interaction between DII and homeostatic model assessment-IR (HOMA-IR) concerning stroke risk, and HOMA-IR did not mediate the association between DII and stroke. In summary, our study elucidated the significant association between DII and stroke risk, independent of IR. This insight suggests that an anti-inflammatory diet may serve as an effective strategy for stroke prevention.
Non-canonical RNA substrates of Drosha lack many of the conserved features found in primary microRNA stem-loops
Authors: Gu Karen , Mok Lawrence , Wakefield Matthew J. , Chong Mark M. W. 
Published: March 2024

AbstractThe RNase III enzyme Drosha has a central role in microRNA (miRNA) biogenesis, where it is required to release the stem-loop intermediate from primary (pri)-miRNA transcripts. However, it can also cleave stem-loops embedded within messenger (m)RNAs. This destabilizes the mRNA causing target gene repression and appears to occur primarily in stem cells. While pri-miRNA stem-loops have been extensively studied, such non-canonical substrates of Drosha have yet to be characterized in detail. In this study, we employed high-throughput sequencing to capture all polyA-tailed RNAs that are cleaved by Drosha in mouse embryonic stem cells (ESCs) and compared the features of non-canonical versus miRNA stem-loop substrates. mRNA substrates are less efficiently processed than miRNA stem-loops. Sequence and structural analyses revealed that these mRNA substrates are also less stable and more likely to fold into alternative structures than miRNA stem-loops. Moreover, they lack the sequence and structural motifs found in miRNA stem-loops that are required for precise cleavage. Notably, we discovered a non-canonical Drosha substrate that is cleaved in an inverse manner, which is a process that is normally inhibited by features in miRNA stem-loops. Our study thus provides valuable insights into the recognition of non-canonical targets by Drosha.
Inducing room-temperature valley polarization of excitonic emission in transition metal dichalcogenide monolayers
Authors: Morozov Sergii , Yezekyan Torgom , Wolff Christian , Bozhevolnyi Sergey I. , Mortensen N. Asger 
Published: March 2024

AbstractThe lowest energy states in transition metal dichalcogenide (TMD) monolayers follow valley selection rules, which have attracted vast interest due to the possibility of encoding and processing of quantum information. However, these quantum states are strongly affected by temperature-dependent intervalley scattering leading to complete valley depolarization, which hampers practical applications at room temperature. Therefore, for achieving clear and robust valley polarization in TMD monolayers one needs to suppress parasitic depolarization processes, which is the central challenge in the growing field of valleytronics. Here, in electron-doping experiments on TMD monolayers, we show that strong doping levels beyond 1013 cm−2 can induce 61% and 37% valley contrast at room temperature in tungsten diselenide and molybdenum diselenide monolayers, respectively. Our findings demonstrate that charged excitons in TMD monolayers hold the potential for the development of efficient valleytronic devices functional at 300 K.
Wild fish consumption can balance nutrient retention in farmed fish
Authors: Willer David F. , Newton Richard , Malcorps Wesley , Kok Bjorn , Little David , Lofstedt Anneli , de Roos Baukje , Robinson James P. W. 
Published: March 2024

AbstractWild fish used as aquafeeds could be redirected towards human consumption to support sustainable marine resource use. Here we use mass-balance fish-in/fish-out ratio approaches to assess nutrient retention in salmon farming and identify scenarios that provide more nutrient-rich food to people. Using data on Norway’s salmon farms, our study revealed that six of nine dietary nutrients had higher yields in wild fish used for feeds, such as anchovies and mackerel, than in farmed salmon production. Reallocating one-third of food-grade wild feed fish towards direct human consumption would increase seafood production, while also retaining by-products for use as aquafeeds, thus maximizing nutrient utilization of marine resources.
How does public perception of climate protest influence support for climate action?
Authors: Badullovich N. , Tucker D. , Amoako R. , Ansah P. , Davis B. , Horoszko U. , Zakiyyah H. , Maibach E. 
Published: March 2024

AbstractIncreasingly, climate activists use nonviolent civil disobedience (NVCD) to raise awareness about the need to end fossil fuel use. In two small studies we explored the potential of NVCD to enhance U.S. public support for this goal. Study 1 showed that some NVCD actions (e.g., marches and sit-ins) and some targets of those actions (e.g., fossil fuel companies) are seen as more acceptable than other targets (e.g., ordinary people). Study 2 suggested that perceived acceptable NVCD actions against perceived acceptable targets may be more effective than other forms of NVCD. We provide some potential directions for future research to better elucidate understanding on this topic.
Emotion regulation flexibility and momentary affect in two cultures
Authors: Chen Mark Shuquan , Bi Kaiwen , Han Xuerui , Sun Pei , Bonanno George A. 
Published: March 2024

AbstractRecent theoretical models highlight the importance of emotion regulation (ER) flexibility, challenging traditional notions of universally maladaptive versus adaptive strategies. Here we employed ecological momentary assessment to develop proxy ecological measures for ER flexibility components (context sensitivity, repertoire and feedback responsiveness) and examine their associations with momentary affective outcomes in two independent samples from the United States (158 adults and 12,217 observations) and China (144 adults and 11,347 observations, analysis preregistered). Participants completed four daily surveys for 21 days, reporting emotional situations, situation characteristics, ER use and change and momentary distress. Increased momentary context sensitivity and use of repertoire were found associated with reduced distress, while results for feedback responsiveness were less consistent. Maintaining effective strategies was generally adaptive, whereas switching from ineffective strategies was adaptive for momentary depressed, but not anxious, mood. This innovative ecological momentary assessment design demonstrates transcultural similarities in ER flexibility’s benefits and nuanced implications of its components on affective outcomes.
Calculations of the mechanical, optoelectronic, and magnetic properties of FrGeX3 (X = Cl, Br, I) under hydrostatic pressures based on first-principles theories
Authors: Hasan M. D. Ratul , Apon Imtiaz Ahamed , Ovi Istiak Ahmed , Haque Mohammad Salman 
Published: March 2024

Using first-principles calculations based on density functional theory, this work investigated the mechanical, magnetic, elastic, electrical, and optical characteristics of the halide-based perovskite FrGeX3 (X = Cl, Br, I) at different hydrostatic pressures ranging from 0 to 9 GPa. It was determined that the compound FrGeX3 (X = Cl, Br, I) is stable and ductile in nature by calculating its thermodynamic and mechanical stability using the parameters of its formation enthalpy and elastic constant. When no hydrostatic pressure is applied, the band computations reveal that FrGeCl3, FrGeBr3, and FrGeI3 all remain in the semiconductor region with bandgaps of 1.14, 0.8, and 0.645 eV, respectively. The study examined how increasing induced pressure affects the bandgap and density of states of the structure for all three halides. The bandgap of FrGeCl3, FrGeBr3, and FrGeI3 fell to 0 eV at 9, 6, and 5 GPa, respectively. In addition, the optical absorption, reflectivity, refractive index, and imaginary and real components of dielectric functions were all studied in detail for cubic perovskites FrGeX3 (X = Cl, Br, I) under varying hydrostatic pressures, from 0 to 9 GPa. Due to increased pressure, the compound transitioned into a conductor and improved its absorption capabilities for all compounds within the 8–14 eV range, making it suitable for use in the UV spectrum. Cl has the largest absorption among all compounds, whereas I displays the lowest. Reflectivity ranges from around 14% to 18% for all compounds and increases w%ith pressure. The actual component of the refractive index ranges from around 2.25 to 2.7 at 0 eV and increases with pressure. Chlorine has a low refractive index, whereas iodine demonstrates the greatest. The highest fluctuation is shown for Br. The dielectric characteristics vary from around 5 to 7.5 F/m. Chlorine (Cl) has the least charge storage capacity, while iodine (I) demonstrates the most, of which both increase with pressure in all compounds. Structure FrGeX3 (X = Cl, Br, I) is hardened and made more ductile by applying hydrostatic pressure, as seen by the increasing bulk, Young’s, and shear modulus values, as well as the elastic constants (C11 and C12). While the electrons were in a co-linear position, the magnetic property was also studied by optimizing the band structure and density of states. The diamagnetic property of the combination FrGeX3 (where X = Cl, Br, I) remained unchanged even when subjected to increased pressure. According to the findings, this perovskite material has remarkable absorption properties, which point to a change in its behavior from semiconductor to metal. Their potential uses in solar cells, UV absorbers, and optoelectronic devices are highlighted by these computational results.