bluuebunny/crossref_metadata_2025_split huggingface dataset:
Weighted nonparametric maximum likelihood estimate of a mixing distribution in nonrandomized clinical trials
Authors: Liu Chaofeng , Xie Jun , Zhang Ying 
Published: May 2007

AbstractHierarchical models have a variety of applications, including multi‐center clinical trials, local estimation of disease rates, longitudinal studies, risk assessment, and meta‐analysis. In a hierarchical model, observations are sampled conditional on individual unit‐specific parameters and these parameters are sampled from a mixing distribution. In observational studies or nonrandomized clinical trails, observations may be biased samples from a population and heterogeneous with respect to some confounding factors. Without controlling the heterogeneity in the sample, the standard estimation of the mixing distribution may lead to inaccurate statistical inferences. In this article, we propose a weighted nonparametric maximum likelihood estimate (NPMLE) of the mixing distribution and its smoothed versionviaweighted smoothing by roughening. The proposed estimator reduces bias by assigning a weight to each subject in the sample. The weighted NPMLE is shown to be weighted self‐consistent and therefore can be easily calculated through a recursive approach. Simulation studies were conducted to evaluate the performance of the proposed estimator. We applied this method to clinical trial data evaluating a new treatment for stress urinary incontinence. Copyright © 2007 John Wiley & Sons, Ltd.
Inelastic behavior of staggered truss systems
Authors: Kim Jinkoo , Lee Joon‐Ho , Kim Young‐Moon 
Published: May 2007

AbstractIn this study 4‐, 10‐, and 30‐story staggered truss systems (STS) were designed and their seismic performances were evaluated by pushover analysis. The results were compared with the seismic performance of conventional moment‐resisting frames and braced frames. According to the analysis results, the STS showed relatively satisfactory lateral load‐resisting capability compared with conventional braced frames. However, in the mid‐ to high‐rise STS, plastic hinges formed at horizontal and vertical chords of a Vierendeel panel, which subsequently led to brittle collapse of the structure. Based on these observations, reinforcing schemes were applied and their effects on enhancing lateral load‐resisting capacity were investigated. Copyright © 2007 John Wiley & Sons, Ltd.
Seismic analysis, design, and review for tall buildings
Authors: Moehle Jack P. 
Published: May 2007

AbstractWhereas current building codes legally apply to seismic design of tall buildings, their prescriptive provisions do not adequately address many critical aspects. Performance‐based engineering provides a desirable alternative. Application of performance‐based procedures requires: an understanding of the relation between performance and nonlinear modeling; selection and manipulation of ground motions appropriate to design hazard levels; selection of appropriate nonlinear models and analysis procedures; interpretation of results to determine design quantities based on nonlinear dynamic analysis procedures; careful attention to structural details; and peer review by independent qualified experts to help assure the building official that the proposed materials and system are acceptable. These topics are discussed with an emphasis on tall buildings. Copyright © 2006 John Wiley & Sons, Ltd.
Antibiotic from the marine environment with antimicrobial fouling activity
Authors: Wigglesworth‐Cooksey B. , Cooksey K. E. , Long Richard 
Published: May 2007

AbstractThe degradation in performance of submerged marine structures through their colonization by micro‐ and macrobiota is well known. Historically, toxic surface coatings have been used to control both types of fouling. Legislative requirements worldwide now require alternative non‐ or minimally toxic coatings to be used. Here we report on the potential for synthetic 2‐pentyl‐4‐quinolinol (PQ), an antibiotic from an Alteromonas sp., as a candidate antifoulant. Hundred micromolar PQ reduces the growth of four marine diatoms that usually grow as biofilms. Furthermore, PQ inhibits the initial adhesive process in Amphora coffeaeformis in a logarithmic dose‐dependent manner, but not the adhesion of a Navicula sp., indicating differing adhesive processes in these two diatoms. Treatment of established biofilms with PQ causes a rapid and complete loss of motility in both Amphora and Navicula and eventually, as seen by Sytox Green staining, cell death, and lysis. We conclude that PQ, or one of its chemical analogues, holds promise as an antifoulant molecule for inclusion in marine surface coating. © 2007 Wiley Periodicals, Inc. Environ Toxicol 22: 275–280, 2007.
Retracted: Characterization of enhanced antibacterial effects of novel silver nanoparticles
Authors: Shrivastava Siddhartha , Bera Tanmay , Roy Arnab , Singh Gajendra , Ramachandrarao P , Dash Debabrata 
Published: May 2007

In the present study, we report the preparation of silver nanoparticles in the range of 10–15 nm with increased stability and enhanced anti-bacterial potency. The morphology of the nanoparticles was characterized by transmission electron microscopy. The antibacterial effect of silver nanoparticles used in this study was found to be far more potent than that described in the earlier reports. This effect was dose dependent and was more pronounced against gram-negative bacteria than gram-positive organisms. Although bacterial cell lysis could be one of the reasons for the observed antibacterial property, nanoparticles also modulated the phosphotyrosine profile of putative bacterial peptides, which could thus affect bacterial signal transduction and inhibit the growth of the organisms.
First Report of Barley yellow mosaic virus in Barley in Spain
Authors: Achon M. A. , Marsiñach M. , Ratti C. , Rubies-Autonell C. 
Published: May 2007

Recently, the presence of Barley mild mosaic virus (BaMMV) and the weakly serological detection of Barley yellow mosaic virus (BaYMV) were reported in Spain (1); both viruses are members of the genus Bymovirus (family Potyviridae). Random and symptomatic surveys were conducted during February and March of 2003 in barley fields in northeastern Spain to determine the occurrence of BaMMV and BaYMV. Leaves from 316 samples collected in 15 fields were analyzed using enzyme-linked immunosorbent assay (ELISA) with commercial antisera specific for BaYMV and BaMMV (Loewe Biochemica, Munich) as well as antisera against both viruses (provided by T. Klumen). Positive ELISA samples were further analyzed using reverse transcription-polymerase chain reaction (RT-PCR) with specific primers that amplify 445 bp of BaMMV and 433 bp of BaYMV (2). Complete agreement was observed between the ELISA and RT-PCR results. Mixed infections of BaYMV and BaMMV were detected in 10 samples, BaYMV in 5 samples and BaMMV in 3 samples. Samples positive for both viruses that exhibited clear mosaic symptoms were collected in two fields. RT-PCR products from five BaYMV-infected samples were cloned and sequenced and showed 96 to 98% identity to BaYMV isolates previously reported from Europe (Genbank Accession Nos. AJ1515479-85 and X95695-7) and 92 to 95% identity with isolates reported from Asia (GenBank Accession Nos. AB023585-96, AJ132268, AJ224619-22, AJ224624-28, AF536944-46, AF536948-58, D01091, D00544, and Z24677). Sequence identity of Spanish isolates were 96 to 99%. To our knowledge, this is the first report of BaYMV infecting barley in Spain and illustrates the association of both Bymoviruses infecting barley. References: (1) M. A. Achon et al. Plant Dis. 87:1004, 2003. (2) D. Hariri et al. Eur. J. Plant Pathol. 106:365, 2000.
Outbreak of Iris yellow spot virus in Onion Seed Crops in Central Oregon
Authors: Crowe F. J. , Pappu H. R. 
Published: May 2007

Iris yellow spot virus (IYSV) of the genus Tospovirus, family Bunyaviridae is considered an emerging or reemerging pathogen affecting onions in the United States. The virus has been endemic to the Treasure Valley of southern Idaho for more than a decade (4). Reports of its further spread came from several states in the region, most recently from New Mexico and Washington (1,3). During the 2004 growing season, a few onion seed crops near Madras (Jefferson County) in central Oregon showed symptoms suggestive of IYSV infection, including characteristic diamond-shaped scape lesions (2). By July, scapes in one-half of a 4-ha field were 100% symptomatic and 95% lodged, leading to nearly total crop failure; in the other half, scapes were 30 to 40% symptomatic and 15% lodged, with symptoms and lodging increasing weekly at 8 weeks before harvest. The half of this crop with greater incidence was immediately adjacent to a field where very limited IYSV-like symptoms were noticed in a 2002–2003 onion seed crop that was harvested in mid-August 2003, after the highly symptomatic 2003–2004 onion seed crop was planted next to it in early July 2003. Both crops were planted from true seed. In another onion seed crop located 1,000 m away, IYSV-like symptoms were abundant around the field edges in July and through the field in August 2004, with approximately 5% lodging by mid-August. A small number of plants with IYSV-like symptoms were present in a few more distant fields, but not in most onion seed fields in central Oregon. Symptomatic plants were collected and tested in the laboratory for confirmation of IYSV infection. IYSV was confirmed using enzyme-linked immunosorbent assay (ELISA) with a commercially available antiserum (Agdia Inc., Elkhart, IN). Total nucleic acids were extracted, and using primers specific to the nucleocapsid (N) gene of IYSV (3), reverse transcription-polymerase chain reaction (RT-PCR) was done. RT-PCR gave DNA amplicons of the expected size. The DNA amplicons were cloned and sequenced. Nucleotide sequence comparisons with known IYSV N gene sequences confirmed virus identity. The rapid spread of IYSV in the Pacific Northwest and its severity of incidence often leading to 100% incidence is a cause for concern for onion growers and industry. Efforts to identify management practices to reduce its impact have to be undertaken on a regional basis because of its widespread occurrence across several states in the northwestern United States. References: (1) R. Creamer et al. Plant Dis. 88:1049, 2004 (2) L. J. du Toit et al. APSnet image of the week. On-line publication: http://apsnet.org/online/archive/ 2003/IW000030.asp , 2003. (3) L. J. du Toit et al. Plant Dis. 88:222, 2004. (4) J. M. Hall et al. Plant Dis. 77:952, 1993.
Southwestern Dwarf Mistletoe, Arceuthobium vaginatum subsp. cryptopodum, Found Parasitizing Picea pungens in Colorado
Authors: Mathiasen R. , Marcus N. 
Published: May 2007

Southwestern dwarf mistletoe (Arceuthobium vaginatum (Willd.) Presl subsp. cryptopodum (Engelm.) Hawksw. & Wiens, Viscaceae) severely parasitizes several species of pines (Pinus spp., family Pinaceae) in Colorado, Utah, Arizona, New Mexico, and northern Mexico, but it has not been reported to parasitize any species of spruce (Picea, family Pinaceae) (1). However, in June 2004, this dwarf mistletoe was observed parasitizing blue spruce (Picea pungens Engelm.) in the Black Forest north of Colorado Springs, CO (39°02.118′N, 104°36.028′W, elevation 2,250 m). The infected blue spruce was planted as an ornamental approximately 4 m from a 16-m-high ponderosa pine (Pinus ponderosa Douglas ex Lawson & C. Lawson) severely infected with southwestern dwarf mistletoe. Mature dwarf mistletoe shoots were produced on five infected branches of the blue spruce. These shoots were compared with a morphological description of southwestern dwarf mistletoe (1) and this was sufficient for a positive identification of the dwarf mistletoe. The other dwarf mistletoes reported to infect blue spruce are Arceuthobium microcarpum (Engelm.) Hawksw. & Wiens, A. americanum Nutt. ex Engelm., and A. douglasii Engelm.; these are all morphologically distinct from southwestern dwarf mistletoe (1). Three of the infected branches formed small (less than 0.3 m in diameter), nonsystemic witches' brooms. All of the infections on the 6-m-high blue spruce were higher than 1 m on the tree. Thus, it is likely that the spruce was infected after it was transplanted. Three other blue spruces were also located within 4 m of the infected ponderosa pine, but these trees were not infected. To our knowledge, this is the first report of southwestern dwarf mistletoe parasitizing blue spruce and the first report of this dwarf mistletoe on Picea spp. Voucher specimens have been deposited in the Deaver Herbarium, Northern Arizona University, Flagstaff (Accession No. 73959). References: (1) F. Hawksworth and D. Wiens. Dwarf mistletoes: Biology, pathology, and systematics. USDA For. Serv. Agric. Handb. 709, 1996.
First Report of Bean pod mottle virus in Soybean in Alabama
Authors: Sikora E. J. , Murphy J. F. 
Published: May 2007

During October 2003, soybean (Glycine max (L.) Merr.) plants showing symptoms of delayed maturity of stems, or green stem, were observed in a soybean cultivar trial on Dee River Ranch in Pickens County, Alabama. Symptoms were characteristic of those caused by Bean pod mottle virus (BPMV). BPMV infections have been identified in other southern states, including Arkansas, Louisiana, and neighboring Mississippi, but had not yet been identified in Alabama (1,2,3). In this study, a cultivar trial was established as a nonreplicated strip test to evaluate the performance of nongenetically modified soybean cultivars in high-pH soils. The trial consisted of 12 maturity group V cultivars planted side by side in 24-row plots approximately 1 km long. The cultivars consisted of Anand, Asgrow 5547, Asgrow 5944, Delta King 5995, Deltapine 4748, Deltapine 5110, Deltapine 5989, Essex, Hutcheson, Pioneer 9594, Pioneer 9597, and USG5601T. During the season, a known vector of BPMV, the bean leaf beetle (Cerotoma trifurcate Forster), was identified in the plots (4). On 10 October, the majority of plants in the trial had senesced; however, it was observed that plants of 6 of the 12 cultivars were showing symptoms of green stem typical of BPMV infection. A visual assessment was taken to determine incidence of green stem for Asgrow 5547, Delta King 5995, Deltapine 5110, Deltapine 5989, Pioneer 9594, and USG5601T. Incidence between 1 and 5% was observed for Delta King 5995, Deltapine 5989, and Pioneer 9594. Incidence of less than 1% was observed for Asgrow 5547, Deltapine 5110, and USG5601T. Twenty soybean plants showing symptoms of green stem and retaining green leaves were sampled from each of the six cultivars by collecting one trifoliate leaf near the top of the plant. All samples were tested for BPMV using double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) according to the manufacturer's instructions (Agdia, Inc., Elkart, IN). BPMV was detected in 30% of Deltapine 5989, 10% of Delta King 5995, and 45% of Pioneer 9594 plants. BPMV was not detected in Asgrow 5547, Deltapine 5110, and USG5601T. Ten of the samples shown to be infected with BPMV using DAS-ELISA were mechanically transferred to soybean seedlings in the greenhouse. These plants developed systemic mottle symptoms typical of those caused by BPMV and tested positive for the virus BPMV using DAS-ELISA. To our knowledge, this is the first report of BPMV in Alabama. References: (1) N. S. Horn et al. LA. Agric. 13:12, 1970. (2) H. N. Pitre et al. Plant Dis. Rep. 63:419, 1979. (3) J. P. Ross. Plant Dis. Rep. 47:1049, 1963. (4) H. J. Walters. (Abstr.) Phytopathology 48:346, 1958.
The First Report of Beech Bark Disease in Ohio Comes Nineteen Years After the First Report of the Initiating Scale
Authors: MacKenzie M. , Iskra A. J. 
Published: May 2007

Beech bark disease (BBD) is a two-part disease complex. It first requires the feeding of an initiating insect scale and is only fully developed when scale-altered bark becomes infected by one of two Neonectria species. In Ohio, there was a 19-year lag between discovery of the initiating scale insect and the development of BBD. In September 1984, the BBD-initiating scale (Cryptococcus fagisuga Lind) was discovered in the Holden Arboretum, Geauga County, OH (2). Nineteen years later (December 2003), A. Iskra discovered the exotic BBD-causing fungus, Neonectria coccinea (Pers.:Fr.) Rossman & Samuels var faginata Lohman, Watson & Ayers, on American beech (Fagus grandifolia Ehrh.) in the Holden Arboretum. In 1934, Erlich (1) reported that there was normally a delay of at least 1 year between the appearance of the scale and the first appearance of the Neonectria spp. fungus. In the years immediately after the first report of the scale in Ohio (2), pathologists and arboretum staff made frequent visits to the site in an attempt to find Neonectria spp. fruiting. After a decade of searching, these visits became more infrequent. However, it was on one of these visits that A. Iskra found the fungus. He found it on only four trees, none of which had the extensive bark cankering common in chronic Neonectria spp. infections. In North America, the two species of Neonectria that have been involved in BBD mortality are the native N. galligena (Bres.) Rossman & Samuels, or the exotic N. coccinea var faginata. In the absence of beech scale infestations, reports of the native N. galligena infecting American beech are few. Yet, in West Virginia, western Pennsylvania, Michigan, and possibly North Carolina, the fungus first associated with the killing front has been the native N. galligena and not the exotic variety, N. coccinea var faginata. To our knowledge, this is the first report of BBD in Ohio and it is unique because the associated fungus is the exotic variety. References: (1) J. Erlich. Can. J. Res. 10:593, 1934. (2) M. E. Mielke et al. Plant Dis. 69:905, 1985.
First Report of Root Rot Incited by Thielaviopsis basicola on Lamb's Lettuce (Valerianella olitoria) in Europe
Authors: Garibaldi A. , Gilardi G. , Gullino M. L. 
Published: May 2007

Lamb's lettuce (Valerianella olitoria) is increasingly grown in Italy and used in the preparation of processed salad. In the fall of 2003, plants of lamb's lettuce cvs. Trophy and Palmares showing symptoms of severe stunting were observed in several commercial plastic greenhouses near Bergamo in northern Italy. The distribution of the disease was generally uniform in the greenhouses and 10 to 30% of the plants were affected. The first symptoms, consisting of reduced growth of the plants and extensive chlorosis, developed in October at temperatures ranging between 10 and 20°C on 30-day-old plants. The roots of diseased plants showed extensive necrosis that extended to the crown of the plants. The diseased tissue was disinfested for 1 min in 1% NaOCl and plated on potato dextrose agar amended with 100 µg/l streptomycin sulfate. A fungus with the morphological characteristics of Thielaviopsis basicola was consistently and readily isolated from symptomatic tissues (1). Catenulate, cylindrical, hyaline endoconidia and catenulate, subrectangular, thick-walled chlamydospores (aleuriospores) were observed. Ten-day-old plants of cvs. Trophy and Palmares were artificially inoculated by dipping three isolates of T. basicola obtained from infected plants for 15 min in a spore suspension (1 × 106 CFU/ml). Noninoculated plants served as control treatments. Each treatment consisted of 30 plants. Plants were maintained at 20°C in a growth chamber, with 12 h of light/day. Symptoms developed 25 days after the artificial inoculation on both cultivars, and T. basicola was consistently reisolated from diseased plants. The noninoculated plants remained healthy. The pathogenicity test was carried out twice. To our knowledge, this is the first report of T. basicola on lamb's lettuce in Italy as well as in the world. The same disease was described on corn salad (Valerianella locusta) in the United States (2). References: (1) D. E. Mathre and A.V. Ravenscroft. Phytopathology 56:337, 1966. (2) M. E. Stanghellini et al. Plant Dis. 74:81, 1990.
First Report of White Rust of Arugula Caused by Albugo candida in Argentina
Authors: Zapata R. , Romero A. M. , Maseda P. H. 
Published: May 2007

Production of arugula (Eruca sativa) has increased greatly in Argentina. Since 2002, particularly during the fall, a foliar disease has affected commercial crops in Capilla del Señor (northeast of Buenos Aires Province, Argentina). The disease appeared in foci, spreading throughout the whole production field or greenhouse. Severely affected crops were plowed under. Diseased leaves were chlorotic and had white sori that emerged through the abaxial epidermis. Sori corresponded to the white rust agent, Albugo candida (Pers.) Kunze (1). Sporangiophores were hyaline and clavate, and sporangia were globose and hyaline with a mean diameter of 16.2 μm (14.2 to 19.2 μm). Pathogenicity tests were performed by spraying a suspension of 106 zoospores/ml or 5 × 104 sporangia/ml on four healthy 30-day-old arugula plants. Inoculum was prepared by scrapping sporangia from infected leaves. Sporangia were used directly or incubated in sterile distilled water (SDW) for 14 h at 5°C to induce zoospore formation (2). Four additional healthy plants were sprayed with SDW to serve as controls. Plants were kept in plastic bags for 48 h and maintained in the greenhouse thereafter. White rust symptoms, similar to those observed on the original plants from the field, were observed on inoculated plants 10 days after inoculation. To our knowledge, this is the fist report of A. candida on arugula in Argentina. References: (1) K. Mukerji. No. 458 in: Descriptions of Pathogenic Fungi and Bacteria. CMI, Kew, Surrey, UK, 1975. (2) H. Scheck and S. Koike. Plant Dis. 83:877, 1999.
First Incidence of Plum Pox Virus on Apricot Trees in China
Authors: Navratil M. , Safarova D. , Karesova R. , Petrzik K. 
Published: May 2007

Plum pox disease, caused by Plum pox virus (PPV), is the most severe virus disease of plums, apricots, and peaches. The disease causes heavy losses for fruit growers and the international trade of propagation materials and fresh fruits. PPV was first reported in Bulgaria in 1917 (1). It is now widespread in Europe and has been reported from Cyprus, Syria, Egypt, India, Kazakhstan, Chile, the United States, and Canada. Leaves on symptomatic apricot trees (Prunus armeniaca cvs. Hong Mei and Bai Mei and a selected genotype) in the Hunan Province of China showed typical yellow rings and diffused chlorotic spots. Samples from three suspected trees were repeatedly analyzed using double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) and reverse transcription-polymerase chain reaction (RT-PCR) in the summers of 2001-2003. PPV was detected in leaves, bark, and leaf buds of all three trees using ELISA with polyclonal and monoclonal antibodies provided by M. Navratil, Palacky University, Olomouc, Czech Republic (3). The results were confirmed using RT-PCR amplification of a 243-bp of the coat protein gene with a PPV-specific primer pair (2). BLAST analysis of two RT-PCR product sequences (GenBank Accession Nos. AY750961 and AY795603) showed 100% homology to multiple sequences of the PPV-D strain (GenBank Accession Nos. X81080, AF440743, and AF401295). The third sequence (GenBank Accession No. AY795602) had a C at position 112 rather than the T found in the other sequences. The ELISA, RT-PCR, and sequence results indicate that PPV-D was present in the apricot trees. To our knowledge, this is the first indication of PPV occurrence in China. This sporadic incidence of PPV on apricot trees requires addressing problems with the occurrence and spread of plum pox diseases in China and starting an eradication program. References: (1) D. Atanasoff. Annu. Univ. Sofia Fac. Agron. et Sylvic. 11:49, 1932. (2) T. Candresse et al. Phytopathology. 88:198, 1998. (3) I. Hilgert et al. Hybridoma. 12:215, 1993.