bluuebunny/crossref_metadata_2025_split huggingface dataset:
Distributed usability evaluation of the Pennsylvania Cancer Atlas
Authors: Bhowmick Tanuka , Robinson Anthony C , Gruver Adrienne , MacEachren Alan M , Lengerich Eugene J 
Published: July 2008

Abstract

Background
The Pennsylvania Cancer Atlas (PA-CA) is an interactive online atlas to help policy-makers, program managers, and epidemiologists with tasks related to cancer prevention and control. The PA-CA includes maps, graphs, tables, that are dynamically linked to support data exploration and decision-making with spatio-temporal cancer data. Our Atlas development process follows a user-centered design approach. To assess the usability of the initial versions of the PA-CA, we developed and applied a novel strategy for soliciting user feedback through multiple distributed focus groups and surveys. Our process of acquiring user feedback leverages an online web application (e-Delphi). In this paper we describe the PA-CA, detail how we have adapted e-Delphi web application to support usability and utility evaluation of the PA-CA, and present the results of our evaluation.

Results
We report results from four sets of users. Each group provided structured individual and group assessments of the PA-CA as well as input on the kinds of users and applications for which it is best suited. Overall reactions to the PA-CA are quite positive. Participants did, however, provide a range of useful suggestions. Key suggestions focused on improving interaction functions, enhancing methods of temporal analysis, addressing data issues, and providing additional data displays and help functions. These suggestions were incorporated in each design and implementation iteration for the PA-CA and used to inform a set of web-atlas design principles.

Conclusion
For the Atlas, we find that a design that utilizes linked map, graph, and table views is understandable to and perceived to be useful by the target audience of cancer prevention and control professionals. However, it is clear that considerable variation in experience using maps and graphics exists and for those with less experience, integrated tutorials and help features are needed. In relation to our usability assessment strategy, we find that our distributed, web-based method for soliciting user input is generally effective. Advantages include the ability to gather information from users distributed in time and space and the relative anonymity of the participants while disadvantages include less control over when and how often participants provide input and challenges for obtaining rich input.
Gene silencing by RNAi in mouse Sertoli cells
Authors: González-González Emilio , López-Casas Pedro P , del Mazo Jesús 
Published: July 2008

Abstract

Background
RNA interference (RNAi) is a valuable tool in the investigation of gene function. The purpose of this study was to examine the availability, target cell types and efficiency of RNAi in the mouse seminiferous epithelium.

Methods
The experimental model was based on transgenic mice expressing EGFP (enhanced green fluorescent protein). RNAi was induced by in vivo transfection of plasmid vectors encoding for short hairpin RNAs (shRNAs) targeting EGFP. shRNAs were transfected in vivo by microinjection into the seminiferous tubules via the rete testis followed by square wave electroporation. As a transfection reporter, expression of red fluorescent protein (HcRed 1) was used. Cell types, the efficiency of both transfections and RNAi were all evaluated.

Results
Sertoli cells were the main transfected cells. A reduction of about 40% in the level of EGFP protein was detected in cells successfully transfected both in vivo and in vitro. However, the efficiency of in vivo transfection was low.

Conclusion
In adult seminiferous epithelial cells, in vivo post-transcriptional gene silencing mediated by RNAi via shRNA is efficient in Sertoli cells. Similar levels of RNAi were detected both in vivo and in vitro. This also indicates that Sertoli cells have the necessary silencing machinery to repress the expression of endogenous genes via RNAi.
Persisting with prevention: The importance of adherence for HIV prevention
Authors: Weiss Helen A , Wasserheit Judith N , Barnabas Ruanne V , Hayes Richard J , Abu-Raddad Laith J 
Published: July 2008

Abstract
Background
Only four out of 31 completed randomized controlled trials (RCTs) of HIV prevention strategies against sexual transmission have shown significant efficacy. Poor adherence may have contributed to the lack of effect in some of these trials. In this paper we explore the impact of various levels of adherence on measured efficacy within an RCT.

Analysis
We used simple quantitative methods to illustrate the impact of various levels of adherence on measured efficacy by assuming a uniform population in terms of sexual behavior and the binomial model for the transmission probability per partnership.
At 100% adherence the measured efficacy within an RCT is a reasonable approximation of the true biological efficacy. However, as adherence levels fall, the efficacy measured within a trial substantially under-estimates the true biological efficacy. For example, at 60% adherence, the measured efficacy can be less than half of the true biological efficacy.

Conclusion
Poor adherence during a trial can substantially reduce the power to detect an effect, and improved methods of achieving and maintaining high adherence within trials are needed. There are currently 12 ongoing HIV prevention trials, all but one of which require ongoing user-adherence. Attention must be given to methods of maximizing adherence when piloting and designing RCTs and HIV prevention programmes.
Low-intensity pulsed ultrasound activates the phosphatidylinositol 3 kinase/Akt pathway and stimulates the growth of chondrocytes in three-dimensional cultures: a basic science study
Authors: Takeuchi Ryohei , Ryo Akihide , Komitsu Noriko , Mikuni-Takagaki Yuko , Fukui Atsuko , Takagi Yuta , Shiraishi Toshihiko , Morishita Shin , Yamazaki Yoshiyuki , Kumagai Ken , Aoki Ichiro , Saito Tomoyuki 
Published: July 2008

Abstract
Introduction
The effect of low-intensity pulsed ultrasound (LIPUS) on cell growth was examined in three-dimensional-cultured chondrocytes with a collagen sponge. To elucidate the mechanisms underlying the mechanical activation of chondrocytes, intracellular signaling pathways through the Ras/mitogen-activated protein kinase (MAPK) and the integrin/phosphatidylinositol 3 kinase (PI3K)/Akt pathways as well as proteins involved in proliferation of chondrocytes were examined in LIPUS-treated chondrocytes.

Methods
Articular cartilage tissue was obtained from the metatarso-phalangeal joints of freshly sacrificed pigs. Isolated chondrocytes mixed with collagen gel and culture medium composites were added to type-I collagen honeycomb sponges. Experimental cells were cultured with daily 20-minute exposures to LIPUS. The chondrocytes proliferated and a collagenous matrix was formed on the surface of the sponge. Cell counting, histological examinations, immunohistochemical analyses and western blotting analysis were performed.

Results
The rate of chondrocyte proliferation was slightly but significantly higher in the LIPUS group in comparison with the control group during the 2-week culture period. Western blot analysis showed intense staining of type-IX collagen, cyclin B1 and cyclin D1, phosphorylated focal adhesion kinase, and phosphorylated Akt in the LIPUS group in comparison with the control group. No differences were detected, however, in the MAPK, phosphorylated MAPK and type-II collagen levels.

Conclusion
LIPUS promoted the proliferation of cultured chondrocytes and the production of type-IX collagen in a three-dimensional culture using a collagen sponge. In addition, the anabolic LIPUS signal transduction to the nucleus via the integrin/phosphatidylinositol 3-OH kinase/Akt pathway rather than the integrin/MAPK pathway was generally associated with cell proliferation.
Phase II Multicenter Study of Bendamustine Plus Rituximab in Patients With Relapsed Indolent B-Cell and Mantle Cell Non-Hodgkin's Lymphoma
Authors: Robinson K. Sue , Williams Michael E. , van der Jagt Richard H. , Cohen Philip , Herst Jordan A. , Tulpule Anil , Schwartzberg Lee S. , Lemieux Bernard , Cheson Bruce D. 
Published: July 2008

Purpose Bendamustine HCl is a bifunctional mechlorethamine derivative with clinical activity in the treatment of non-Hodgkin's lymphoma. This study evaluated bendamustine plus rituximab in 67 adults with relapsed, indolent B-cell or mantle cell lymphoma without documented resistance to prior rituximab. Patients and Methods Patients received rituximab 375 mg/m2 intravenously on day 1 and bendamustine 90 mg/m2 intravenously on days 2 and 3 of each 28-day cycle for four to six cycles. An additional dose of rituximab was administered 1 week before the first cycle and 4 weeks after the last cycle. Sixty-six patients (median age, 60 years) received at least one dose of both drugs. Results Overall response rate was 92% (41% complete response, 14% unconfirmed complete response, and 38% partial response). Median duration of response was 21 months (95% CI, 18 to 24 months). Median progression-free survival time was 23 months (95% CI, 20 to 26 months). Outcomes were similar for patients with indolent or mantle cell histologies. The combination was generally well tolerated; the primary toxicity was myelosuppression (grade 3 or 4 neutropenia, 36%; grade 3 or 4 thrombocytopenia, 9%). Conclusion Bendamustine plus rituximab is an active combination in patients with relapsed indolent and mantle cell lymphoma.
Tracking genomic instability within irradiated and bystander populations
Authors: Chapman Kim L , Kelly James W , Lee Ryonfa , Goodwin Edwin H , Kadhim Munira A 
Published: July 2008

Abstract
Over the past two decades, our understanding of radiation biology has undergone a fundamental shift in paradigms away from deterministic ‘hit-effect’ relationships and towards complex ongoing ‘cellular responses’. These responses include now familiar, but still poorly understood, phenomena associated with radiation exposure such as genomic instability and bystander effects. Although these responses share some common features (e.g. they occur at high frequency following very low doses, are heterogeneous in their induction and are observed at time points far removed from the initial radiation exposure), the precise relationship between genomic instability and bystander effects remains to be elucidated. This review will provide a synthesis of the known, and proposed, interrelationships among irradiated and bystander cellular responses to radiation. It also discusses our current experimental approach for gaining a clearer understanding of the relationship between damage induction and long-term effects in both irradiated and bystander cells.
Epidermal growth factor receptor inhibitors for radiotherapy: biological rationale and preclinical results
Authors: Zips Daniel , Krause Mechthild , Yaromina Ala , Dörfler Annegret , Eicheler Wolfgang , Schütze Christina , Gurtner Kristin , Baumann Michael 
Published: July 2008

Abstract
Blocking the epidermal growth factor receptor (EGFR) represents a role model for a successful biological targeting approach to improving outcomes after radiotherapy. This review summarizes data from several local tumour control experiments in which EGFR inhibitors were combined with radiation in FaDu human squamous cell carcinomas xenografted into nude mice. BIBX1382BS is an oral bioavailable inhibitor of the intracellular tyrosine kinase domain of EGFR. It was administered in different experimental settings: concurrent with fractionated radiotherapy, following completion of irradiation, and in the period between surgery and adjuvant irradiation. Despite beneficial effects on tumour growth, in none of these experimental settings did BIBX1382BS improve local tumour control. In contrast, cetuximab (Erbitux), an IgG1 monoclonal antibody against the extracellular ligand-binding domain of EGFR, improved local tumour control when given concurrently with radiation. Results from a series of local tumour control experiments designed to elucidate the underlying mechanisms of cetuximab suggest that multiple radiobiological mechanisms might contribute to the observed effects: decreased number of clonogenic tumour cells, increased cellular radiation sensitivity, decreased repopulation and improved reoxygenation of clonogenic tumour cells during the combined treatment. In summary, the data suggest that different classes of EGFR inhibitors may have a different potential to improve local tumour control after fractionated irradiation.
Amelioration of the pathological changes induced by radiotherapy in normal tissues
Authors: Rezvani Mohi 
Published: July 2008

Abstract
Damage to normal tissues remains the most important limiting factor in the treatment of cancer by radiotherapy. In order to deliver a radiation dose sufficient to eradicate a localised tumour, the normal tissues need to be protected. A number of pharmacological agents have been used experimentally, and some clinically, to alleviate radiation damage to normal tissues but at present there is no effective clinical treatment to protect normal tissues against radiation injury. This paper reviews the efficacy of pharmacological substances used after radiation exposure. The limited evidence available suggests that radiation insult, like many other tissue injuries, is amenable to pharmacological intervention. However, care must be taken in the administration of these substances for the management of different aspects of radiation damage because there appears to be a tissue-specific response to different pharmacological agents. Also, one must be aware of the limitations of results obtained from animal models, which do not necessarily correlate to benefits in the clinic; the conflicting results reported with some modifiers of radiation damage; and the toxicity of these substances and radiation doses used in published studies. Conflicting results may arise from differences in the pathophysiologic processes involved in the development of radiation lesions in different tissues, and in the markers used to assess the efficacy of treatment agents.
PEGylated nanostructured lipid carriers loaded with 10-hydroxycamptothecin: an efficient carrier with enhanced anti-tumour effects against lung cancer
Authors: Zhang Xinxin , Gan Yong , Gan Li , Nie Shufang , Pan Weisan 
Published: July 2008

AbstractMost drugs do not have the pharmacokinetic features required for optimal pulmonary delivery. In this study, we developed PEGylated nanostructured lipid carriers (PEG-NLCs) to improve the delivery of anti-tumour agents to lung tumours. PEG-40 NLCs modified with PEG-40 stearate (molecular weight 2000 Da), PEG-100 NLCs modified with PEG-100 stearate (molecular weight 5000 Da) and NLCs without PEG modification were prepared by melt-emulsification and homogenization, and were loaded with 10-hydroxycamptothecin (HCPT). They were investigated in terms of physiological characteristics, biodistribution, cellular uptake, and anti-tumour effect in-vivo. PEG-NLCs exhibited regular morphology, with a spherical shape. The particle size (measured by laser diffraction) was approximately 100 nm. Encapsulation in PEG-NLCs protected the active lactone form of HCPT compared with HCPT solution after incubation with plasma. In biodistribution studies, PEG-NLCs, especially PEG-40 NLCs, had longer circulation time and decreased uptake by the reticuloendothelial system (RES) compared with unmodified NLCs. PEG-NLCs accumulated in the lungs after i.v. injection in mice. PEG-NLCs showed enhanced cellular uptake by human lung adenocarcinoma epithelial A549 cells. In-vivo experiments indicated that PEG-NLCs loaded with HCPT have superior efficacy against A549 lung cancer compared with HCPT solution and NLCs. These results suggest that PEG-NLCs is a promising delivery system for HCPT in the treatment of lung cancer.
The role of the antennae during courtship behaviour in the parasitic waspTrichopria drosophilae
Authors: Romani Roberto , Rosi Marzia Cristiana , Isidoro Nunzio , Bin Ferdinando 
Published: July 2008

SUMMARYWe have studied the courtship behaviour of Trichopria drosophilaePerkins (Hymenoptera: Diapriidae), a pupal parasitoid of the common fruit fly Drosophila melanogaster Meigen (Diptera: Drosophilidae), to understand the role of the antennae. Virgin pairs of the parasitoid perform an intense and stereotyped antennal courtship, which leads to copulation. During antennation, the two male fourth antennomeres come into contact with the two apical female antennomeres, and thus the secretion produced by the sex pheromone gland is spread onto the female receptors. By preventing the transfer of the courtship pheromone from male to female antennae, mating was inhibited. Moreover, selective ablation of single antennae demonstrated that the courtship pheromone acts on contact. When antennae of both sexes were partially removed (ablation at the same side, i.e. right or left) courtship was successful and copulation occurred. In contrast, in the case of antennal ablation at opposite sides, courtship failed despite the short distance between secretion and receptors. These results confirm the hypothesis that T. drosophilae male antennal glands are the release site of a contact courtship pheromone, playing a key role in mating behaviour. The occurrence of male antennal glands in Hymenoptera and other insect orders is discussed.
Nitric oxide induces aspects of egg-laying behavior in Aplysia
Authors: Miller Nimrod , Katzoff Ayelet , Susswein Abraham J. 
Published: July 2008

SUMMARY
Aplysia egg laying is a complex behavior requiring synchronized activity in many organs. Aspects of the behavior are synchronized viathe direct effects of peptide bag cell neurohormones and via stimuli arising during the behavior. Stimuli synchronizing egg laying were examined by treating A. fasciata with a nitric oxide (NO) donor. NO elicited normal appetitive and consummatory behaviors leading to the deposition of cordons containing egg capsules without eggs. The sites at which NO acts were investigated. The latency to egg deposition in response to a NO donor was shorter than that in response to other stimuli, consistent with NO acting at downstream sites from those affected by the other stimuli. The NO donor does not act on neurons in the head ganglia presynaptic to the bag cells or on the bag cells. Ligating the small hermaphroditic duct connecting the gonad to the accessory genital mass blocked egg laying in response to bag cell homogenates,but not in response to exogenous NO, indicating that NO does not act on the gonad. NO is released by transport of eggs along the small hermaphroditic duct, and NO directly acts on the accessory genital mass which packages eggs. NO also acts at a second site, independent of the effect on the accessory genital mass. A NO donor activates appetitive behaviors that normally precede egg laying even in A. californica that are unable to lay eggs.
The neuroethology of song cessation in response to gleaning bat calls in two species of katydids,Neoconocephalus ensigerandAmblycorypha oblongifolia
Authors: ter Hofstede Hannah M. , Fullard James H. 
Published: July 2008

SUMMARYWe investigated whether the use of primary or secondary behavioural defences is related to prey sensory thresholds using two species of North American katydids, Neoconocephalus ensiger and Amblycorypha oblongifolia. Male katydids produce intense calling songs to attract mates, and many gleaning bat species are known to use these calls to locate them as prey. Low duty cycle calling (i.e. sporadic calls) is a primary defence against gleaning bats (prevents attacks), and song cessation is a secondary defence (enables survival of an attack), for which these two species show behavioural differences. Echolocation calls of Myotis septentrionalis, a sympatric gleaning bat species, were broadcast to singing katydids and to neural preparations of these katydids to test if differences in behavioural response were related to differences in auditory sensitivity. We measured thresholds and firing patterns of the T-cell, an auditory interneuron involved in predator detection. We hypothesized that low duty cycle calling is the best defence for species not sensitive enough to mount a secondary defence in response to predator cues; therefore, we predicted that N. ensiger (high duty cycle song) would have lower behavioural and T-cell thresholds than A. oblongifolia (low duty cycle song). Although more N. ensiger ceased singing than A. oblongifolia, the number and maximum firing rate of T-cell action potentials did not differ between species for echolocation call sequences. We suggest that the T-cell has divergent functions within the Tettigoniidae,including predator and mate detection, and the function could be context dependent in some species.
Experimental reduction of ultraviolet wavelengths reflected from parasitic eggs affects rejection behaviour in the blackcapSylvia atricapilla
Authors: Honza Marcel , Polačiková Lenka 
Published: July 2008

SUMMARYHosts of brood parasites use a variety of cues relating to eggshell appearance of parasitic eggs, which facilitate their recognition and rejection. It has been documented that host visual perception of different colours including UV wavelengths plays an important role in this respect. In the study reported here, we aimed to test whether artificial reduction of the UV wavelengths reflected from parasitic eggshell affects rejection behaviour in the blackcap Sylvia atricapilla. To achieve this goal, we experimentally manipulated, with UV, part of spectra reflected from conspecific eggs and reduced it into the range of 320–350 nm. We used an ultraviolet light blocker, which did not influence the reflectance shape of other spectrum parts. We also used a group of experimental eggs coated in Vaseline, which had no effect on the spectral shape in the UV or visible ranges of the light spectrum. Additionally, we used a third experimental group of unmanipulated eggs as a control. The experimental eggs coated in the UV blocker were rejected at a higher rate than those coated in the Vaseline. Moreover, a binary logistic regression revealed that an artificial reduction of the UV wavelengths reflected from the parasitic egg significantly affected the probability of being rejected by the hosts. To our knowledge, this is the first experimental study to reveal that manipulation with UV wavelengths affects the recognition of parasitic eggs, indicating that the UV part of the spectrum has an important role in host recognition behaviour.