bluuebunny/crossref_metadata_2025_split huggingface dataset:
Expression in Natural Speech
Authors: Tatham Mark , Morton Katherine 
Published: March 2008

AbstractThis chapter details some contributions of the results of biological and cognitive processing to natural speech. It presents the general concept of classifying basic and secondary emotions. A vector model of emotion is suggested and the importance of dynamic modeling is emphasized. The problems of an adequate approach to modelling variability, and the relationship between variability and adequate acoustic modeling is discussed. Problems inherent in collecting useable data bases are identified.
The Perception of Expression
Authors: Tatham Mark , Morton Katherine 
Published: March 2008

AbstractThis chapter emphasizes the goal of the speaker as the production of a speech waveform containing the components, which will trigger adequate perception in the listener. Current limitations to characterizing acoustic triggers are discussed, including the listener’s ability to differentiate acoustic signals and the non-linearity in the relation between the signal and listener. The relationship between rendering the speaker’s plan and the ability to assign a perceptually useful label to the speech waveform is emphasized.
Expressive Synthesis: The Longer Term
Authors: Tatham Mark , Morton Katherine 
Published: March 2008

AbstractSynthesis systems need to address several difficulties to produce acceptable expressive synthetic speech. It is argued that the role of adequate phonological description, robust biological models of the speaking system, and the need for a supervisory agent — the cognitive phonetic agent — are essential to building expressive synthesis systems. Such agents are sometimes referred to as ‘cerebral tools’.
Linear time-varying models can reveal non-linear interactions of biomolecular regulatory networks using multiple time-series data
Authors: Kim Jongrae , Bates Declan G. , Postlethwaite Ian , Heslop-Harrison Pat , Cho Kwang-Hyun 
Published: March 2008

Abstract
Motivation: Inherent non-linearities in biomolecular interactions make the identification of network interactions difficult. One of the principal problems is that all methods based on the use of linear time-invariant models will have fundamental limitations in their capability to infer certain non-linear network interactions. Another difficulty is the multiplicity of possible solutions, since, for a given dataset, there may be many different possible networks which generate the same time-series expression profiles.
Results: A novel algorithm for the inference of biomolecular interaction networks from temporal expression data is presented. Linear time-varying models, which can represent a much wider class of time-series data than linear time-invariant models, are employed in the algorithm. From time-series expression profiles, the model parameters are identified by solving a non-linear optimization problem. In order to systematically reduce the set of possible solutions for the optimization problem, a filtering process is performed using a phase-portrait analysis with random numerical perturbations. The proposed approach has the advantages of not requiring the system to be in a stable steady state, of using time-series profiles which have been generated by a single experiment, and of allowing non-linear network interactions to be identified. The ability of the proposed algorithm to correctly infer network interactions is illustrated by its application to three examples: a non-linear model for cAMP oscillations in Dictyostelium discoideum, the cell-cycle data for Saccharomyces cerevisiae and a large-scale non-linear model of a group of synchronized Dictyostelium cells.
Availability: The software used in this article is available from http://sbie.kaist.ac.kr/software
Contact: ckh@kaist.ac.kr
Supplementary information: Supplementary data are available at Bioinformatics online.
Rheological Properties of Fermented Rice Flour Gel
Authors: Lu Zhan‐Hui , Yuan Mei‐Lan , Sasaki Tomoko , Li Li‐Te , Kohyama Kaoru 
Published: March 2008

ABSTRACTTo clarify the rheological properties of fermented rice noodle (sour mifen) produced in South China, we studied the mechanical properties of gels made from fermented and nonfermented (control) rice flours using static tensile testing, two‐bite testing, and dynamic viscoelastic measurement. Rheological measurement under large deformation showed that retrogradation in fermented rice gel proceeded more slowly than in nonfermented rice gel. Lower hardness and brittleness and higher cohesiveness and resilience (degree of recovery) for gels made from fermented rice flour demonstrated that the gel was less firm but more elastic and flexible. Storage moduli of both types of gel increased with time, but the starch retrogradation was suppressed for fermented rice gel. Fermented rice gel exhibited higher resilience and lower rigidity than nonfermented gel, thus the gel stability improved. The chemical analysis of both starches suggests that the partial hydrolysis of amylopectin occurred during the fermentation process.
Relationship of Bread Quality to Kernel, Flour, and Dough Properties
Authors: Dowell F. E. , Maghirang E. B. , Pierce R. O. , Lookhart G. L. , Bean S. R. , Xie F. , Caley M. S. , Wilson J. D. , Seabourn B. W. , Ram M. S. , Park S. H. , Chung O. K. 
Published: March 2008

ABSTRACTThis study measured the relationship between bread quality and 49 hard red spring (HRS) or 48 hard red winter (HRW) grain, flour, and dough quality characteristics. The estimated bread quality attributes included loaf volume, bake mix time, bake water absorption, and crumb grain score. The best‐fit models for loaf volume, bake mix time, and water absorption had R2 values of 0.78–0.93 with five to eight variables. Crumb grain score was not well estimated, and had R2 values ≈0.60. For loaf volume models, grain or flour protein content was the most important parameter included. Bake water absorption was best estimated when using mixograph water absorption, and flour or grain protein content. Bake water absorption models could generally be improved by including farinograph, mixograph, or alveograph measurements. Bake mix time was estimated best when using mixograph mix time, and models could be improved by including glutenin data. When the data set was divided into calibration and prediction sets, the loaf volume and bake mix time models still looked promising for screening samples. When including only variables that could be rapidly measured (protein content, test weight, single kernel moisture content, single kernel diameter, single kernel hardness, bulk moisture content, and dark hard and vitreous kernels), only loaf volume could be predicted with accuracies adequate for screening samples.
Corn Gluten Meal as a Thermoplastic Resin: Effect of Plasticizers and Water Content
Authors: Lawton J. W. , Selling G. W. , Willett J. L. 
Published: March 2008

ABSTRACTCorn gluten meal (CGM) was studied to investigate the effect plasticizers and water have on its melt processing, and how this melting affects its mechanical properties. GCM containing varying amounts of water were mixed with 23% (w/w) plasticizers; (glycerol, triethylene glycol (TEG), dibutyl tartrate, and octanoic acid in a Haake bowl mixer at 80°C. The amount of water in the CGM affected the amount of torque produced in the Haake mixer. This increase in torque was correlated with how well the CGM melted in the mixer. SEM images of CGM melted in the mixer showed a more uniform homogenous structure when processed at its optimum moisture content. Glycerol, TEG, and dibutyl tartrate produced the greatest torque when the CGM contained <1% water. Octanoic acid produced the greatest torque when the CGM was processed at 8% moisture. CGM plasticized with TEG and octanoic acid were mixed at either their optimum moisture or at 9.6% moisture and then compression molded into tensile bars. The tensile strengths of the bars that were mixed at their optimum moisture content were significantly greater than the bars mixed at 9.6% moisture. The tensile properties of the CGM samples were affected by relative humidity (rh). The tensile strength decreased and elongation increased as relative humidity increased. CGM plasticized with TEG saw a greater changes in its tensile properties due to relative humidity than did octanoic acid plasticized CGM.
Staling Effects When Adding Low Amounts of Normal and Heat‐Treated Barley Flour to a Wheat Bread
Authors: Purhagen Jeanette K. , Sjöö Malin E. , Eliasson Ann‐Charlotte 
Published: March 2008

ABSTRACTThe properties of a white wheat bread could be changed by adding normal or heat‐treated barley flour in small amounts (2 and 4%) to a white wheat bread recipe. Differences regarding gelatinization as well as retrogradation properties were found when analyzing the two flours in model systems. The heat‐treated flour was fully gelatinized due to prior time, temperature, and pressure treatment and could therefore absorb larger amounts of water than the other flours. In gelatinized model systems with 40% flour (dwb), the heat‐treated barley flour contained less retrograded amylopectin as compared with normal barley flour after storage for up to 14 days, whereas no differences were found with 20% flour (dwb). However, stored breads showed an increased retrogradation of amylopectin (as measured by differential scanning calorimetry [DSC]) when 2% pretreated barley flour was added as compared with addition of 2% normal barley flour. On the other hand, there were no significant differences at the 4% level. Addition of either of the barley flours resulted in less firm breads during storage as compared with the control breads. Increased water absorption in barley flour and thus increased water content in the breads or different water‐binding capacities of the flour blends could explain these results. The present study indicated that water had a stronger influence on bread firmness than the retrogradation of amylopectin. This conclusion was based on breads with pretreated barley flour being less firm than breads with normal barley flour, although the retrogradation, as determined by DSC, was higher.
Effect of DDGS, Moisture Content, and Screw Speed on Physical Properties of Extrudates in Single‐Screw Extrusion
Authors: Chevanan Nehru , Rosentrater Kurt A. , Muthukumarappan Kasiviswanathan 
Published: March 2008

ABSTRACTThree isocaloric (3.5 kcal/g) ingredient blends containing 20, 30, and 40% (wb) distillers dried grains with solubles (DDGS) along with soy flour, corn flour, fish meal, and mineral and vitamin mix, with net protein adjusted to 28% (wb) for all blends, were extruded in a single‐screw laboratory‐scale extruder at screw speeds of 100, 130, and 160 rpm, and 15, 20, and 25% (wb) moisture content. Increasing DDGS content from 20 to 40% resulted in a 37.1, 3.1, and 8.4% decrease in extrudate durability, specific gravity, and porosity, respectively, but a 7.5% increase in bulk density. Increasing screw speed from 100 to 160 rpm resulted in a 20.3 and 8.8% increase in durability and porosity, respectively, but a 12.9% decrease in bulk density. On the other hand, increasing the moisture content from 15 to 25% (wb) resulted in a 28.2% increase in durability, but an 8.3 and 8.5% decrease in specific gravity and porosity, respectively. Furthermore, increasing the screw speed and moisture content of the blends, respectively, resulted in an increase of 29.9 and 16.6% in extruder throughput. The extrudates containing 40% DDGS had 8.7% lower brightness, as well as 20.9 and 16.9% higher redness and yellowness, compared with the extrudates containing only 20% DDGS. Increasing the DDGS content from 20 to 40% resulted in a 52.9 and 51.4% increase in fiber and fat content, respectively, and a 7.2% decrease in nitrogen free extract. As demonstrated in this study, ingredient moisture content and screw speed are critical considerations when producing extrudates with ingredient blends containing DDGS, as they are with any other ingredients.
Compaction of Corn Distillers Dried Grains
Authors: Xu Yixiang , Hanna Milford A. , Weber Robert 
Published: March 2008

ABSTRACTCorn distillers dried grains (DDGS) were compacted into cylindrical pellets (3.5 cm in length, 1.5 cm in diameter) utilizing a closed‐end die under axial stress from a vertical piston applied by an Instron universal testing machine. The effects of independent variables, including the raw material moisture content (25–35% db), processing temperature (100–120°C), pressure (12.5–37.5 MPa), and dwell time (5–15 sec) on pellet density, durability, and stability were determined using response surface methodology. Moisture content, temperature, and pressure significantly affected (P < 0.05) the properties of DDGS pellets, while the influence of dwell time was negligible (P > 0.05). Increasing temperature initially increased and then decreased unit density. High moisture and pressure had favorable effects on unit density and durability rating. The density ratio increased with increasing pressure and moisture content. The results suggested technical feasibility of compacting DDGS. For the range of variables tested, optimum levels were identified as 34.6% moisture content, 107°C press temperature, and 36.8 MPa pressure to obtain maximum durability and density and acceptable dimensional stability.
Measurement of Wheat Hardness by Seed Scarifier and Barley Pearler and Comparison with Single‐Kernel Characterization System
Authors: Liu KeShun 
Published: March 2008

ABSTRACTA new procedure based on a seed scarifier (SS) for measuring wheat hardness was described and investigated along with methods using a barley pearler (BP) and the single kernel characterization system (SKCS). Hardness measured by SS and BP is expressed as a percentage of kernel weight remaining after abrading and defined as abrasion resistance index (ARI). For a given sample weight, increased abrading time decreased ARI but improved the ability to differentiate variation among samples. The effect of sample moisture was also statistically significant. For improved performance of SS and BP, based on distinct patterns of relationships between surface removal rates and surface removal levels among soft and hard wheats, a combination of parameters that produces ARI values in the range of 80–20, and a run for a set of reference material are recommended. Differences in measured hardness values from SS, BP, and SKCS existed within a wheat group, but they were very much method‐dependent. Nevertheless, all methods were able to differentiate variations between soft and hard wheat groups. Because of low cost, durability, simplicity, repeatability, and aforementioned ability, SS and BP, although limited by lack of standardization and calibration procedures, can still be useful for grain hardness measurement, particularly when and where instruments for contemporary popular methods such as SKCS and near‐infrared reflectance (NIR) spectroscopy are not readily available.
Green Fluorescent Protein as a Tissue Marker in Transgenic Maize Seed
Authors: Shepherd C. T. , Vignaux N. , Peterson J. M. , Johnson L. A. , Scott M. P. 
Published: March 2008

ABSTRACTSeed tissues (endosperm, embryo, and pericarp) are often separated into tissue‐enriched fractions by wet‐ or dry‐milling methods for use in food, feed, and industrial products. Seed tissue markers that are sensitive and readily quantifiable would be useful to optimize fractionation processes. To meet this need for tissue markers, we set out to produce and characterize different transgenic maize lines, each containing green fluorescent protein (GFP) in either endosperm or embryo. We examined mRNA transcripts using expressed sequence tag (EST) profiles of several major seed proteins and selected several with strong seed tissue preferences. Stably transformed maize lines were produced, and visual observation of fluorescence confirmed the presence of GFP in the desired tissues. To establish the utility of this grain for evaluating the effectiveness or separation efficiencies of fractionation processes, transgenic kernels were hand‐dissected into pericarp, endosperm, and embryo fractions and the GFP concentration in each fraction was determined. The GFP distribution between fractions of each transgenic event was calculated from GFP concentration and mass balance, which enabled the determination of GFP yield based on the hand‐dissection fractionation data and the amount of tissue contamination in each fraction. Our transgenic lines exhibited strong tissue preference for either embryo or endosperm. These lines should be useful for assessing separation efficiencies in maize fractionation processes.
Glycemic Response to Oat Bran Muffins Treated to Vary Molecular Weight of β‐Glucan
Authors: Tosh Susan M. , Brummer Yolanda , Wolever Thomas M. S. , Wood Peter J. 
Published: March 2008

ABSTRACTOat bran muffins, containing 4 or 8 g of β‐glucan per two‐muffin serving, were prepared with or without β‐glucanase treatment to produce a range of β‐glucan molecular weights from 130,000 to just over 2 million. Following an overnight fast, the glycemic responses elicited by the untreated and treated muffins was measured in 10 healthy subjects and compared with a control whole wheat muffin. Taken all together, the 4‐g β‐glucan/serving muffins reduced blood glucose peak rise (PBGR) by 15 ± 6% compared with the control. The 8‐g β‐glucan/serving muffins had a significantly greater effect (44 ± 5% reduction compared with the control, P < 0.05). The efficacy of the muffins decreased as the molecular weight was reduced from a 45 ± 6% reduction in PBGR (P < 0.05) for the untreated muffins (averaged of both serving sizes) to 15 ± 6% (P < 0.05) for muffins with the lowest molecular weight. As the molecular weight was reduced from 2,200,000 to 400,000, the solubility of the β‐glucan increased from a mean of 44 to 57%, but as the molecular weight was further decreased to 120,000, solubility fell to 26%. There was a significant correlation (r2 = 0.729, P < 0.001) between the peak blood glucose and the product of the extractable β‐glucan content and the molecular weight of the β‐glucan extracted.
Rapid High‐Performance Liquid Chromatography Determination of Tocopherols and Tocotrienols in Cereals
Authors: Nielsen Merete M⊘ller , Hansen Åse 
Published: March 2008

ABSTRACTA rapid normal‐phase high‐performance liquid chromatography (NP‐HPLC) method has been developed for rapid determination of the total content of tocopherols (T) and tocotrienols (T3) in cereals. The new method uses a one‐step extraction followed by NP‐HPLC coupled with a fluorescence detector. The new method provides a baseline separation of the critical peaks of beta‐tocotrienol (β‐T3) and gamma‐tocopherol (γ‐T) within a short time of analysis. The extraction step requires no saponification step or addition of antioxidant. Addition of butylated hydroxytoluene (BHT) had no effect on the stability of vitamin E during sampling. The recovery was 96–100%. The method is demonstrated by successful quantification of vitamin E in barley, wheat, and spelt grains, as well as wheat germ and flours from wheat, spelt, and rye.
Principal Transcriptional Programs Regulating Plant Amino Acid Metabolism in Response to Abiotic Stresses
Authors: Less Hadar , Galili Gad 
Published: March 2008

AbstractUsing a bioinformatics analysis of public Arabidopsis (Arabidopsis thaliana) microarray data, we propose here a novel regulatory program, combining transcriptional and posttranslational controls, which participate in modulating fluxes of amino acid metabolism in response to abiotic stresses. The program includes the following two components: (1) the terminal enzyme of the module, responsible for the first catabolic step of the amino acid, whose level is stimulated or repressed in response to stress cues, just-in-time when the cues arrive, principally via transcriptional regulation of its gene; and (2) the initiator enzyme of the module, whose activity is principally modulated via posttranslational allosteric feedback inhibition in response to changes in the level of the amino acid, just-in-case when it occurs in response to alteration in its catabolism or sequestration into different intracellular compartments. Our proposed regulatory program is based on bioinformatics dissection of the response of all biosynthetic and catabolic genes of seven different pathways, involved in the metabolism of 11 amino acids, to eight different abiotic stresses, as judged from modulations of their mRNA levels. Our results imply that the transcription of the catabolic genes is principally more sensitive than that of the biosynthetic genes to fluctuations in stress-associated signals. Notably, the only exception to this program is the metabolic pathway of Pro, an amino acid that distinctively accumulates to significantly high levels under abiotic stresses. Examples of the biological significance of our proposed regulatory program are discussed.
SHORT HYPOCOTYL IN WHITE LIGHT1, a Serine-Arginine-Aspartate-Rich Protein in Arabidopsis, Acts as a Negative Regulator of Photomorphogenic Growth
Authors: Bhatia Shikha , Gangappa Sreeramaiah N. , Kushwaha Ritu , Kundu Snehangshu , Chattopadhyay Sudip 
Published: March 2008

AbstractLight is an important factor for plant growth and development. We have identified and functionally characterized a regulatory gene SHORT HYPOCOTYL IN WHITE LIGHT1 (SHW1) involved in Arabidopsis (Arabidopsis thaliana) seedling development. SHW1 encodes a unique serine-arginine-aspartate-rich protein, which is constitutively localized in the nucleus of hypocotyl cells. Transgenic analyses have revealed that the expression of SHW1 is developmentally regulated and is closely associated with the photosynthetically active tissues. Genetic and molecular analyses suggest that SHW1 acts as a negative regulator of light-mediated inhibition of hypocotyl elongation, however, plays a positive regulatory role in light-regulated gene expression. The shw1 mutants also display shorter hypocotyl in dark, and analyses of shw1 cop1 double mutants reveal that SHW1 acts nonredundantly with COP1 to control hypocotyl elongation in the darkness. Taken together, this study provides evidences that SHW1 is a regulatory protein that is functionally interrelated to COP1 and plays dual but opposite regulatory roles in photomorphogenesis.
Impact of the Leeuwin Current on the spatial distribution of the puerulus settlement of the western rock lobster (Panulirus cygnus) and implications for the fishery of Western Australia
Authors: CAPUTI NICK 
Published: March 2008

AbstractPrevious studies have shown that the strength of the Leeuwin Current is correlated with the level of the puerulus (post‐larval stage) settlement in the western rock lobster (Panulirus cygnus). The level of puerulus settlement has also been shown to be a reliable predictor of catch in the rock lobster fishery in Western Australia, 3 and 4 yr later. This study examines the impact of the south‐flowing Leeuwin Current on the spatial distribution of the puerulus settlement along the coast based on information from 10 settlement sites. In years of strong Leeuwin Current, the location of the peak settlement occurs further south by up to 2° latitude compared with years of weak Leeuwin Current. The key months of Leeuwin Current strength that affect the abundance of the puerulus settlement are generally February to April, during the early larval stages. However, the months that affect the spatial distribution are from June onwards, which is closer to the period of puerulus settlement that starts in about August each year. The mean latitude of puerulus settlement shows a very good relationship with Leeuwin Current strength in June to December (r = 0.86, P < 0.001). The variation in spatial distribution in puerulus settlement can be used to predict the spatial distribution of fishing effort and catch, 3 and 4 yr later (r = 0.78 and 0.84, respectively, P < 0.001).