bluuebunny/crossref_metadata_2025_split huggingface dataset:
“What exactly are you inferring?” A closer look at hypothesis testing
Authors: Newman Michael C 
Published: April 2008

Abstract
This critical review describes the confused application of significance tests in environmental toxicology and chemistry that often produces incorrect inferences and indefensible regulatory decisions. Following a brief review of statistical testing theory, nine recommendations are put forward. The first is that confidence intervals be used instead of hypothesis tests whenever possible. The remaining recommendations are relevant if hypothesis tests are used. They are as follows: Define and justify Type I and II error rates a priori; set and justify an effect size a priori; do not confuse p(E | H0) and p(H0 | E); design tests permitting Positive Predictive Value estimation; publish negative results; estimate a priori, not post hoc, power; as warranted by study goals, favor null hypotheses that are not conventional nil hypotheses; and avoid definitive inferences from isolated tests.
Avoidance tests in site-specific risk assessment—influence of soil properties on the avoidance response of collembola and earthworms
Authors: Natal-da-Luz Tiago , Römbke Jörg , Sousa José Paulo 
Published: April 2008

Abstract
The ability of organisms to avoid contaminated soils can act as an indicator of toxic potential in a particular soil. Based on the escape response of earthworms and Collembola, avoidance tests with these soil organisms have great potential as early screening tools in site-specific assessment. These tests are becoming more common in soil ecotoxicology, because they are ecologically relevant and have a shorter duration time compared with standardized soil toxicity tests. The avoidance response of soil invertebrates, however, can be influenced by the soil properties (e.g., organic matter content and texture) that affect behavior of the test species in the exposure matrix. Such an influence could mask a possible effect of the contaminant. Therefore, the effects of soil properties on performance of test species in the exposure media should be considered during risk assessment of contaminated soils. Avoidance tests with earthworms (Eisenia andrei) and springtails (Folsomia candida) were performed to identify the influence of both organic matter content and texture on the avoidance response of representative soil organisms. Distinct artificial soils were prepared by modifying quantities of the standard artificial soil components described by the Organization for Economic Co-operation and Development to achieve different organic matter and texture classes. Several combinations of each factor were tested. Results showed that both properties influenced the avoidance response of organisms, which avoided soils with low organic matter content and fine texture. Springtails were less sensitive to changes in these soil constituents compared with earthworms, indicating springtails can be used for site-specific assessments of contaminated soils with a wider range of respective soil properties.
Effects of estimates from different geochemical models on metal fate predicted by coupled speciation-fate models
Authors: Bhavsar Satyendra P , Gandhi Nilima , Diamond Miriam L , Lock Alan S , Spiers Graeme , de la Torre M. Catalina Alfaro 
Published: April 2008

Abstract
Coupled metal speciation-fate models are an improvement over stand-alone fate-transport models for accurately assessing metal fate and transport. These coupled models estimate fate-controlling partition coefficients using geochemical speciation/complexation models. Commercially available geochemical models are practical options for a two-step, loose coupling with fate-transport models. These models differ in their partitioning estimates because of differences in assumptions, databases, and so on. The present study examines the effects of differences in estimates from geochemical models on estimates of cationic metal fate using two geochemical models: the Windermere humic aqueous model (WHAM) and the minicomputer equilibrium+ model (MINEQL+). The results from each geochemical model were used as input to the fate module of TRANSPEC (a general, coupled metal transport and speciation model). The two versions of the TRANSPEC model were then used to assess the fate of five cationic metals (Cd, Cu, Ni, Pb, and Zn) in Ross Lake (Flin Flon, MB, Canada; alkaline, eutrophic, mine impacted), Kelly Lake (Sudbury, ON, Canada; circumneutral, mesotrophic, mine influenced), and Lake Tantaré (Quebec City, QC, Canada; acidic, oligotrophic, pristine). For relatively soluble metals (Cd, Ni, and Zn), the WHAM and MINEQL+ estimates of speciation/complexation were similar for Ross and Kelly lakes but differed for Lake Tantaré. These differences, however, did not result in significant differences in overall fate estimates. Marked differences were observed between the WHAM and MINEQL+ estimates of partition coefficient, Kd, for more particle-reactive Cu and Pb that translated into the greatest impact on fate in mesotrophic Kelly Lake, in which particle movement is important for fate.
Effects of chronic dietary and waterborne cadmium exposures on the contamination level and reproduction of daphnia magna
Authors: Geffard Olivier , Geffard Alain , Chaumot Arnaud , Vollat Bernard , Alvarez Cathy , Tusseau-Vuillemin Marie-Hélène , Garric Jeanne 
Published: April 2008

Abstract
Regulatory assessments of metal toxicity on freshwater organisms assume that toxic effects are caused by dissolved metals. In aquatic systems, organisms are exposed to both dissolved and particulate-bound metals. In this study, the chronic toxicity of dietary cadmium (Cd) on the reproduction and Cd body burden of Daphnia magna was investigated. Daphnids (&lt;24 h) were successively exposed to dissolved Cd (8 h) and then to uncontaminated or contaminated algae (16 h) for 21 d. The results show a higher Cd burden in daphnids because of the addition of contaminated food and reveal that Cd uptake by D. magna from water and food was additive for the lowest Cd concentrations tested. Similar Cd distributions (cytosolic and insoluble fractions) were observed in the two groups of organisms, showing similar potential toxicity of Cd accumulated from the two exposure routes. Dietary Cd induces deleterious effects on D. magna reproduction. On the basis of Cd body burden of daphnids, the results support the claim that waterborne and dietary Cd exposures were additive in causing toxicity for Cd concentrations lower than 25 μg/L. At the highest Cd concentrations, the importance of dietary Cd on the daphnid contamination level decreases and confounding factors such as feeding rate reduction seem to appear, which induce an effect on neonate reproduction. In this study, we illustrate the need to take the dietary pathway into account in regulatory assessments and to establish effective concentrations with particulate-bound metals.
Spatial covariation of microbial community composition and polycyclic aromatic hydrocarbon concentration in a creosote-polluted soil
Authors: Törneman Niklas , Yang Xiuhong , Bååth Erland , Bengtsson Göran 
Published: April 2008

Abstract
Little is known about the spatial connection between soil microbial community composition and polycyclic aromatic hydrocarbon (PAH) concentration. A spatially explicit survey at a creosote-contaminated site demonstrated that microbial biomass (total concentration of phospholipid fatty acids [PLFAs]) and microbial community composition (PLFA fingerprints) were spatially autocorrelated, mostly within a distance of 25 m, and covaried with PAH concentrations. The concentration of PLFAs indicative of gram-negative bacteria (16:1ω7c, 16:1ω7t, 18:1ω7, cy17:0, and cy19:0) increased in the PAH hot spots, whereas PLFAs representing fungi and gram-positive bacteria (including actinomycetes) were negatively correlated to PAH concentrations. Most PLFAs were spatially autocorrelated, with distances varying between 4 and 25 m. Those PLFAs that increased in PAH-contaminated soil had autocorrelation ranges between 4 and 16 m, whereas the fungal indicator PLFA 18:2ω6,9 had the largest autocorrelation range (25 m). Bacterial strains isolated using a spray-plate technique and with the same PLFA composition as that in contaminated soil samples were capable of degrading phenanthrene, fluoranthene, and pyrene, indicating that the main PAH degraders could be isolated.
Creating metal-spiked bed sediments: A case study from Orewa estuary, New Zealand
Authors: Lu Xueqiang , Bibby Rebecca L , Ford Richard B , Webster-Brown Jenny G 
Published: April 2008

Abstract
Spiking sediments to achieve target concentrations of heavy metal pollutants is a key step in sediment toxicity tests. It is difficult, however, to ensure that metals in an artificially spiked sediment will behave naturally. A method has been developed in the present study to create Cu-, Pb-, and Zn-spiked sediments in which naturally occurring adsorption onto sediment surfaces is the dominant process binding the metals and in which precipitation of readily redissolved minerals and other metal-bearing phases (artifacts of the spiking procedure) are avoided. Uncontaminated bed sediment from an intertidal mudflat in the Orewa estuary, New Zealand, was characterized in terms of existing metal content, optimal adsorption pH, and adsorption capacity. Competitive adsorption between Cu and Pb as well as complexation by seawater anions only slightly affected metal adsorption from seawater. Surface complexation modeling indicated that iron oxide surfaces in the sediment likely were dominating metal adsorption processes. Spiking experiments were designed using these established adsorption characteristics but with significantly higher (&gt;100-fold) concentrations of sediments and dissolved metals and a liquid to solid (L:S) ratio of approximately 5.5. An equilibration time of at least 36 h was required to achieve a reproducible target metal concentration, which could be reliably predicted from the L:S ratio and the initial metal concentration in the spiking solution. Adsorption equilibrium remained the process governing metal binding to the sediment, and no indication was observed that the adsorption capacity of the sediment had been exceeded or that additional metal-bearing phases had been formed.
Biodegradability of highly ethoxylated nonionic surfactants: Determination of intermediates and pathways of biodegradation
Authors: Sparham Chris , Rehman Naheed , Melling Jim , Van Duynhoven John , Marshall Stuart 
Published: April 2008

AbstractExisting data regarding alcohol ethoxylate (AE) surfactants indicate that structures with greater than 20 ethoxylate (EO) units per molecule or with multibranched alkyl chains may not pass a ready biodegradability test. This could have important consequences for complying with regional regulatory requirements and for the potential risks these chemicals could present to the environment. We investigated the influence of chemical structure on the biodegradability of AEs with different alkyl chain branching and EO content. The AEs investigated were a multibranched AE (average, 18 EO), an oxo-AE (monobranched; average, 23 EO), and a linear AE of oleochemical origin (average, 40 EO). The aims of the present study were to assess the ready biodegradability of AEs with high EO content and to establish the mechanism or pathway by which biodegradation occurs for the oxo-AE. Biodegradation studies were conducted using standard test conditions (International Standards Organization 14593). Solid-phase extraction and liquid chromatography with electrospray mass spectrometry were used to detect profiles in both derivatized and underivatized extracts of samples. Derivatization with phthalic anhydride was used to improve ionization of the lower-ethoxylated AEs and free alcohol that were key indicators in the present study. All AEs were rapidly biodegraded, achieving more than 60% mineralization of parent material. Central fission was the predominant mechanism for the oxo-AE, as confirmed by identification of the oligomeric distribution and quantification of polyethylene glycol released during biodegradation.
Estrogenic activity of lambda-cyhalothrin in the MCF-7 human breast carcinoma cell line
Authors: Zhao Meirong , Zhang Ying , Liu Weiping , Xu Chao , Wang Lumei , Gan Jianying 
Published: April 2008

Abstract
Synthetic pyrethroids are widely used in both agricultural and urban environments for insect control. Lambda-cyhalothrin (LCT) is one of the most common pyrethroids and is used mainly for controlling mosquitoes, fleas, cockroaches, flies, and ants around households. Previous studies have addressed the environmental behaviors and acute toxicities of LCT, but little is known about its chronic toxicity, such as estrogen-like activity. In the present study, the estrogenic potential of LCT was evaluated using the MCF-7 human breast carcinoma cell line. The in vitro E-screen assay showed that 10−7 M LCT could significantly promote MCF-7 cell proliferation, with a relative proliferative effect ratio of 45%. The cell proliferation induced by LCT could be blocked completely, however, by the addition of 10−9 M of the estrogen receptor (ER)-antagonist ICI 182,780. The semiquantitative reverse transcription-polymerase chain reaction (RT-PCR) results showed that the Trefoil factor 1 (pS2) and progesterone receptor gene expression were up-regulated by 10−7 M LCT for 2- and 1.5-fold, respectively. On the other hand, RT-PCR, Western blot analysis, and immunofluorescent assay demonstrated that LCT significantly repressed the mRNA and protein expression levels of ERα and ERβ. These observations indicate that LCT possesses estrogenic properties and may function as a xenoestrogen, likely via a mechanism similar to that of 17β-estradiol. The endocrine-disruption potential of LCT should be considered when assessing the safety of this compound in sensitive environmental compartments.
Dietary accumulation, disposition, and metabolism of technical pentabrominated diphenyl ether (DE-71) in pregnant mink (Mustela vison) and their offspring
Authors: Zhang Si , Bursian Steve , Martin Pamela A , Chan Hing Man , Martin Jonathan W 
Published: April 2008

Abstract
Concentrations of polybrominated diphenyl ethers (PBDEs) in humans and wildlife suggest significant bioaccumulation potential in mammals, but no quantitative biomagnification data from controlled experiments are currently available. As part of a larger study examining the effects of PBDEs on mink (Mustela vison) reproduction and development, we examined congener-specific tissue distribution, maternal transfer, biotransformation, and biomagnification of the technical penta-BDE mixture, DE-71, in farmed mink. Adult female mink were fed one of four concentrations of DE-71 (0-2.5 μg/g) in the diet from breeding through gestation and until weaning at 6 weeks postparturition. Parent PBDEs were measured in tissues and excreta of adult mink, kits, and juveniles, whereas hydroxylated PBDEs (OH-PBDEs) were measured in juveniles only. Similar lipid-normalized concentrations of PBDEs were detected in most tissues of adult mink with the exception of brain, in which concentrations were significantly lower. Kits, however, had a higher proportion of PBDEs in brain compared with adults, presumably because of incomplete development of the blood-brain barrier. Maternal transfer favored lower-brominated PBDE congeners, and the bulk of the body burden in kits at weaning resulted from lactational rather than transplacental transfer. Lipid-normalized, whole-body biomagnification factors ranged from 0.5 to 5.2 for the major congeners and were highest for BDEs 47 and 153. Metabolism clearly limited the biomagnification of some PBDEs, and OH-PBDEs were detectable in plasma, liver, and feces. On a mass basis, OH-PBDEs accounted for 28 to 32% of the excreted fraction, indicating metabolism was an important elimination pathway. Further studies are required to understand the mechanisms of PBDE biotransformation.
Kinetic study of the 2-methyl-3-methoxy-4-phenylbutanoic acid produced by oxidation of microcystin in aqueous solutions
Authors: Wu Xingqiang , Xiao Bangding , Gong Yan , Wang Zhi , Chen Xiaoguo , Li Renhui 
Published: April 2008

Abstract
Microcystins (MCs) are a family of related cyclic hepatotoxic heptapeptides, of which more than 70 types have been identified. The chemically unique nature of the C20 β-amino acid, (2S,3S,8S,9S)-3-amino-9-methoxy-2,6,8-trimethyl-10-phenyldeca-4,6-dienoic acid (Adda), portion of the MCs has been exploited to develop a strategy to analyze the entirety. Oxidation of MCs causes the cleavage of MC Adda to form 2-methyl-3-methoxy-4-phenylbutanoic acid (MMPB). In the present study, we investigated the kinetics of MMPB produced by oxidation of the most-often-studied MC variant, MC-LR (L = leucine, R = arginine), with permanganate-periodate. This investigation allowed insight regarding the influence of the reaction conditions (concentration of the reactants, temperature, and pH) on the conversion rate. The results indicated that the reaction was second order overall and first order with respect to both permanganate and MC-LR. The second-order rate constant ranged from 0.66 to 1.35 M/s at temperatures from 10 to 30°C, and the activation energy was 24.44 kJ/mol. The rates of MMPB production can be accelerated through increasing reaction temperature and oxidant concentration, and sufficient periodate is necessary forthe formation of MMPB. The initial reaction rate under alkaline and neutral conditions is higher than that under acidic conditions, but the former decreases faster than the latter except under weakly acidic conditions. These results provided new insight concerning selection of the permanganate-periodate concentration, pH, and temperature needed for the oxidation of MCs with a high and stable yield of MMPB.
Mathematical Fuzzy Logics
Authors: Gottwald Siegfried 
Published: April 2008

AbstractThe last decade has seen an enormous development in infinite-valued systems and in particular in such systems which have become known as mathematical fuzzy logics.The paper discusses the mathematical background for the interest in such systems of mathematical fuzzy logics, as well as the most important ones of them. It concentrates on the propositional cases, and mentions the first-order systems more superficially. The main ideas, however, become clear already in this restricted setting.
Improved Vascular Engraftment and Graft Function After Inhibition of the Angiostatic Factor Thrombospondin-1 in Mouse Pancreatic Islets
Authors: Olerud Johan , Johansson Magnus , Lawler Jack , Welsh Nils , Carlsson Per-Ola 
Published: April 2008

OBJECTIVE—Insufficient development of a new intra-islet capillary network after transplantation may be one contributing factor to the failure of islet grafts in clinical transplantation. The present study tested the hypothesis that the angiostatic factor thrombospondin-1 (TSP-1), which is normally present in islets, restricts intra-islet vascular expansion posttransplantation.
RESEARCH DESIGN AND METHODS—Pancreatic islets of TSP-1–deficient (TSP-1−/−) mice or wild-type islets transfected with siRNA for TSP-1 were transplanted beneath the renal capsule of syngeneic or immunocompromised recipient mice.
RESULTS—Both genetically TSP-1−/− islets and TSP-1 siRNA-transfected islet cells demonstrated an increased vascular density when compared with control islets 1 month after transplantation. This was also reflected in a markedly increased blood perfusion and oxygenation of the grafts. The functional importance of the improved vascular engraftment was analyzed by comparing glucose-stimulated insulin release from islet cells transfected with either TSP-1 siRNA or scramble siRNA before implantation. These experiments showed that the increased revascularization of grafts composed of TSP-1 siRNA-transfected islet cells correlated to increments in both their first and second phase of glucose-stimulated insulin secretion.
CONCLUSIONS—Our findings demonstrate that inhibition of TSP-1 in islets intended for transplantation may be a feasible strategy to improve islet graft revascularization and function.
Human Adenovirus Type 36 Enhances Glucose Uptake in Diabetic and Nondiabetic Human Skeletal Muscle Cells Independent of Insulin Signaling
Authors: Wang Zhong Q. , Cefalu William T. , Zhang Xian H. , Yu Yongmei , Qin Jianhua , Son Leslie , Rogers Pamela M. , Mashtalir Nazar , Bordelon Justin R. , Ye Jianping , Dhurandhar Nikhil V. 
Published: April 2008

OBJECTIVE—Human adenovirus type 36 (Ad-36) increases adiposity but improves insulin sensitivity in experimentally infected animals. We determined the ability of Ad-36 to increase glucose uptake by human primary skeletal muscle (HSKM) cells.
RESEARCH DESIGN AND METHODS—The effect of Ad-36 on glucose uptake and cell signaling was determined in HSKM cells obtained from type 2 diabetic and healthy lean subjects. Ad-2, another human adenovirus, was used as a negative control. Gene expression and proteins of GLUT1 and GLUT4 were measured by real-time PCR and Western blotting. Role of insulin and Ras signaling pathways was determined in Ad-36–infected HSKM cells.
RESULTS—Ad-36 and Ad-2 infections were confirmed by the presence of respective viral mRNA and protein expressions. In a dose-dependent manner, Ad-36 significantly increased glucose uptake in diabetic and nondiabetic HSKM cells. Ad-36 increased gene expression and protein abundance of GLUT1 and GLUT4, GLUT4 translocation to plasma membrane, and phosphatidylinositol 3-kinase (PI 3-kinase) activity in an insulin-independent manner. In fact, Ad-36 decreased insulin receptor substrate-1 (IRS-1) tyrosine phosphorylation and IRS-1–and IRS-2–associated PI 3-kinase activities. On the other hand, Ad-36 increased Ras gene expression and protein abundance, and Ras siRNA abrogated Ad-36–induced PI 3-kinase activation, GLUT4 protein abundance, and glucose uptake. These effects were not observed with Ad-2 infection.
CONCLUSIONS—Ad-36 infection increases glucose uptake in HSKM cells via Ras-activated PI 3-kinase pathway in an insulin-independent manner. These findings may provide impetus to exploit the role of Ad-36 proteins as novel therapeutic targets for improving glucose handling.
Clinical Evaluation of the Soft-Start (Pulse-delay) Polymerization Technique in Class I and II Composite Restorations
Authors: Chan D. C. N. , Browning W. D. , Frazier K. B. , Brackett M. G. 
Published: April 2008

Clinical Relevance
Class I and II composite restorations placed with a Soft-Start technique showed no significant changes in post-op sensitivity to cold or any decreased signs of marginal stress.
Rime samples characterization and comparison using classical and fuzzy principal components analysis
Authors: Klimaszewska Kamila , Sârbu Costel , Polkowska Żaneta , Błaś Marek , Sobik Mieczysław , Namieśnik Jacek 
Published: April 2008

Abstract
The main objective of this paper is to introduce principal component analysis and two robust fuzzy principal component algorithms as useful tools in characterizing and comparing rime samples collected in different locations in Poland (2004–2007). The efficiency of the applied procedures was illustrated on a data set containing 108 rime samples and concentration of anions, cations, HCHO, as well as pH and conductivity. The fuzzy principal component algorithms achieved better results mainly because they are more compressible than classical PCA and very robust to outliers. For example, a three component model, fuzzy principal component analysis-first component (FPCA-1) accounts for 62.37% of the total variance and fuzzy principal component analysis-orthogonal (FPCA-o) 90.11%; PCA accounts only for 58.30%. The first two principal components explain 51.41% of the total variance in the case of FPCA-1 and 79.59% in the case of FPCA-o as compared to only 47.55% for PCA. As a direct consequence, PCA showed only a partial differentiation of rime samples onto the plane or in the space described by different combination of two or three principal components, whereas a much sharper differentiation of the samples, regarding their origin and location, is observed when FPCAs are applied.