bluuebunny/crossref_metadata_2025_split huggingface dataset:
An immune-competent human gut microphysiological system enables inflammation-modulation by Faecalibacterium prausnitzii
Authors: Zhang Jianbo , Huang Yu-Ja , Trapecar Martin , Wright Charles , Schneider Kirsten , Kemmitt John , Hernandez-Gordillo Victor , Yoon Jun Young , Poyet Mathilde , Alm Eric J. , Breault David T. , Trumper David L. , Griffith Linda G. 
Published: March 2024

AbstractCrosstalk of microbes with human gut epithelia and immune cells is crucial for gut health. However, there is no existing system for a long-term co-culture of human innate immune cells with epithelium and oxygen-intolerant commensal microbes, hindering the understanding of microbe-immune interactions in a controlled manner. Here, we established a gut epithelium-microbe-immune (GuMI) microphysiological system to maintain the long-term continuous co-culture ofFaecalibacterium prausnitzii/Faecalibacterium duncaniaewith colonic epithelium, antigen-presenting cells (APCs, herein dendritic cells and macrophages), and CD4+naive T cells circulating underneath the colonic epithelium. In GuMI-APC condition, multiplex cytokine assays suggested that APCs contribute to the elevated level of cytokines and chemokines secreted into both apical and basolateral compartments compared to GuMI condition that lacks APC. In GuMI-APC withF. prausnitzii(GuMI-APC-FP),F. prausnitziiincreased the transcription of pro-inflammatory genes such as toll-like receptor 1 (TLR1) and interferon alpha 1 (IFNA1) in the colonic epithelium, without a significant effect on cytokine secretion, compared to the GuMI-APC without bacteria (GuMI-APC-NB). In contrast, in the presence of CD4+naive T cells (GuMI-APCT-FP),TLR1,IFNA1, andIDO1transcription levels decreased with a simultaneous increase inF. prausnitzii-induced secretion of pro-inflammatory cytokines (e.g., IL8) compared to GuMI-APC-FP that lacks T cells. These results highlight the contribution of individual innate immune cells in regulating the immune response triggered by the gut commensalF. prausnitzii. The integration of defined populations of immune cells in the gut microphysiological system demonstrated the usefulness of GuMI physiomimetic platform to study microbe-epithelial-immune interactions in healthy and disease conditions.
Optical second harmonic generation in anisotropic multilayers with complete multireflection of linear and nonlinear waves using ♯SHAARP.ml package
Authors: Zu Rui , Wang Bo , He Jingyang , Weber Lincoln , Saha Akash , Chen Long-Qing , Gopalan Venkatraman 
Published: March 2024

AbstractOptical second harmonic generation (SHG) is a nonlinear optical effect widely used for nonlinear optical microscopy and laser frequency conversion. Closed-form analytical solution of the nonlinear optical responses is essential for evaluating materials whose optical properties are unknown a priori. A recent open-source code, ♯SHAARP.si, can provide such closed form solutions for crystals with arbitrary symmetries, orientations, and anisotropic properties at a single interface. However, optical components are often in the form of slabs, thin films on substrates, and multilayer heterostructures with multiple reflections of both the fundamental and up to ten different SHG waves at each interface, adding significant complexity. Many approximations have therefore been employed in the existing analytical approaches, such as slowly varying approximation, weak reflection of the nonlinear polarization, transparent medium, high crystallographic symmetry, Kleinman symmetry, easy crystal orientation along a high-symmetry direction, phase matching conditions and negligible interference among nonlinear waves, which may lead to large errors in the reported material properties. To avoid these approximations, we have developed an open-source package named Second Harmonic Analysis of Anisotropic Rotational Polarimetry in Multilayers (♯SHAARP.ml). The reliability and accuracy are established by experimentally benchmarking with both the SHG polarimetry and Maker fringes using standard and commonly used nonlinear optical materials as well as twisted 2-dimensional heterostructures.
Orbital Reef and commercial low Earth orbit destinations—upcoming space research opportunities
Authors: Zea Luis , Warren Liz , Ruttley Tara , Mosher Todd , Kelsey Laura , Wagner Erika 
Published: March 2024

ABSTRACTAs the International Space Station comes to the end of a transformative era of in-space research, NASA’s Commercial Low Earth Orbit (LEO) Destinations (CLD) Program aims to catalyze a new generation of platforms with co-investment from the private sector, preventing a potential gap in research performed in LEO, while building a robust LEO economy. In this paper, we provide insight into the CLD Program focusing on Orbital Reef, describing its operational and technical characteristics as well as new opportunities it may enable. Achieving about a third of the pressurized volume of the ISS with the launch of a single pressurized module and growing to support hundreds of Middeck Locker Equivalents (MLE) in passive and active payloads internally and externally, Orbital Reef will enable government, academic, and commercial institutions to continue and expand upon research and development (R&D) efforts currently performed on ISS. Additionally, it will enable nascent markets to establish their operations in space, by initiating new lines of research and technology development and the implementation of new ventures and visions. Using Blue Origin’s New Glenn heavy launch system, Sierra Space’s cargo and crew Dream Chaser® vehicles, and Boeing’s Starliner crew vehicle, and expertise from Amazon/Amazon Supply Chain, Arizona State University, Genesis Engineering, and Redwire, Orbital Reef is being designed to address ISS-era transportation logistics challenges. Finally, this manuscript describes some of the expected challenges from the ISS-to-CLD transition, and provides guidance on how researchers in academia and industry can shape the future of commercial destinations and work performed in LEO.
Thioredoxin is a metabolic rheostat controlling regulatory B cells
Authors: Bradford Hannah F. , McDonnell Thomas C. R. , Stewart Alexander , Skelton Andrew , Ng Joseph , Baig Zara , Fraternali Franca , Dunn-Walters Deborah , Isenberg David A. , Khan Adnan R. , Mauro Claudio , Mauri Claudia 
Published: March 2024

AbstractMetabolic programming is important for B cell fate, but the bioenergetic requirement for regulatory B (Breg) cell differentiation and function is unknown. Here we show that Breg cell differentiation, unlike non-Breg cells, relies on mitochondrial electron transport and homeostatic levels of reactive oxygen species (ROS). Single-cell RNA sequencing analysis revealed that TXN, encoding the metabolic redox protein thioredoxin (Trx), is highly expressed by Breg cells, unlike Trx inhibitor TXNIP which was downregulated. Pharmacological inhibition or gene silencing of TXN resulted in mitochondrial membrane depolarization and increased ROS levels, selectively suppressing Breg cell differentiation and function while favoring pro-inflammatory B cell differentiation. Patients with systemic lupus erythematosus (SLE), characterized by Breg cell deficiencies, present with B cell mitochondrial membrane depolarization, elevated ROS and fewer Trx+ B cells. Exogenous Trx stimulation restored Breg cells and mitochondrial membrane polarization in SLE B cells to healthy B cell levels, indicating Trx insufficiency underlies Breg cell impairment in patients with SLE.
Establishment of a zebrafish inbred strain, M-AB, capable of regular breeding and genetic manipulation
Authors: Sadamitsu Kenichiro , Velilla Fabien , Shinya Minori , Kashima Makoto , Imai Yukiko , Kawasaki Toshihiro , Watai Kenta , Hosaka Miho , Hirata Hiromi , Sakai Noriyoshi 
Published: March 2024

AbstractInbred strains of organisms are genetically highly uniform and thus useful for life science research. We have previously reported the ongoing generation of the zebrafish IM strain from the India (IND) strain through full sib-pair mating for 16 generations. However, the IM fish laid a small number of offspring and had a short lifespan, implying the need for discreet care in breeding. Here, we report the subsequent establishment of IM strain as well as the generation of a new inbred zebrafish strain, Mishima-AB (M-AB). M-AB was derived from the *AB strain by full sib-pair mating for over 20 generations, which fulfills the general criterion for the establishment of an inbred strain. In contrast to the IM case, maintenance of the M-AB strain by sib-pair mating required almost no special handling. Genome sequencing of IM individuals from the 47th generation and M-AB individuals from the 27th generation revealed that SNP-based genomic heterogeneity across whole-genome nucleotides was 0.008% and 0.011%, respectively. These percentages were much lower than those of the parental IND (0.197%) and *AB (0.086%) strains. These results indicate that the genomes of these inbred strains were highly homogenous. We also demonstrated the successful microinjection of antisense morpholinos, CRISPR/Cas9, and foreign genes into M-AB embryos at the 1-cell stage. Overall, we report the establishment of a zebrafish inbred strain, M-AB, which is capable of regular breeding and genetic manipulation. This strain will be useful for the analysis of genetically susceptible phenotypes such as behaviors, microbiome features and drug susceptibility.
Long non-coding RNA LINC-PINT as a novel prognostic biomarker in human cancer: a meta-analysis and machine learning
Authors: Lin Jie , Chen Li , Zhang Dan 
Published: March 2024

AbstractLong intergenic non-protein coding RNA, P53 induced transcript (LINC-PINT) exhibits different expression patterns in the majority of tumors, yet its relationship with cancer prognosis remains a subject of debate. This study aims to comprehensively investigate the prognostic significance of LINC-PINT in diverse human cancer. A systematic search was conducted in PubMed, Embase, Cochrane Library, and Web of Science databases to identify pertinent studies exploring the correlation between LINC-PINT expression and cancer patients. Moreover, bioinformatics analysis and in vitro validation were used to validate the results of the meta-analysis and to investigate the potential oncogenic mechanism of LINC-PINT. The meta-analysis encompassed 8 studies, involving 911 patients. The pooled analysis demonstrated a significant association between upregulation of LINC-PINT expression and better survival (P = 0.002) during the cancers. Meanwhile, its downregulation was correlated with advanced tumor staging (P = 0.04) and tumor differentiation (P = 0.03). Additionally, bioinformatics analysis showed that LINC-PINT expression was observed to be linked with Tumor Mutational Burden (TMB) and Microsatellite Instability (MSI) in tumors, the results of bioinformatics were verified by qRT-PCR. And functional enrichment analysis hinted at its involvement in tumorigenesis and tumor progression. Dysregulated LICN-PINT expression is associated with the clinical prognostic and pathological features of various cancers, exhibiting substantial potential as a novel prognostic biomarker.
Assisted reproductive technology-associated risk factors for placenta accreta spectrum after vaginal delivery
Authors: Jwa Seung Chik , Tamaru Shunsuke , Takamura Masashi , Namba Akira , Kajihara Takeshi , Ishihara Osamu , Kamei Yoshimasa 
Published: March 2024

AbstractThis study aimed to investigate assisted reproductive technology (ART) factors associated with placenta accreta spectrum (PAS) after vaginal delivery. This was a registry-based retrospective cohort study using the Japanese national ART registry. Cases of live singleton infants born via vaginal delivery after single embryo transfer (ET) between 2007 and 2020 were included (n = 224,043). PAS was diagnosed in 1412 cases (0.63% of deliveries), including 1360 cases (96.3%) derived from frozen-thawed ET cycles and 52 (3.7%) following fresh ET. Among fresh ET cycles, assisted hatching (AH) (adjusted odds ratio [aOR], 2.5; 95% confidence interval [CI] 1.4–4.7) and blastocyst embryo transfer (aOR, 2.2; 95% CI 1.3–3.9) were associated with a significantly increased risk of PAS. For frozen-thawed ET cycles, hormone replacement cycles (HRCs) constituted the greatest risk factor (aOR, 11.4; 95% CI 8.7–15.0), with PAS occurring in 1.4% of all vaginal deliveries following HRC (1258/91,418 deliveries) compared with only 0.11% following natural cycles (55/47,936). AH was also associated with a significantly increased risk of PAS in frozen-thawed cycles (aOR, 1.2; 95% CI 1.02–1.3). Our findings indicate the need for additional care in the management of patients undergoing vaginal delivery following ART with HRC and AH.
Structural optimization of multistage depressurization sleeve of axial flow control valve based on Stacking integrated learning
Authors: Li Shuxun , Deng Guolong , Hu Yinggang , Yu Mengyao , Ma Tingqian 
Published: March 2024

AbstractDue to the requirements of the working environment, the marine axial flow control valve needs to reduce the noise as much as possible while ensuring the flow capacity to meet the requirements. To improve the noise reduction effect of the axial flow control valve, this paper proposes a Stacking integrated learning combined with particle swarm optimization (PSO) method to optimize a multi-stage step-down sleeve of the axial flow control valve. The liquid dynamic noise and flow value of the axial flow control valve are predicted by computational fluid dynamics. Based on the preliminary evaluation of its performance, the structural parameters of the multi-stage pressure-reducing sleeve are parameterized by three-dimensional modeling software. The range of design variables is constrained to form the design space, and the design space is sampled by the optimal Latin hypercube method to form the sample space. An automated solution platform is built to solve noise and flow values under different structural parameters. The Stacking method is used to fuse the three base learners of decision tree regression, Kriging, and support vector regression to obtain a structural optimization fusion model with better prediction accuracy, and the accuracy of the fusion model is evaluated by three different error metrics of coefficient of determination (R2), Root Mean Squared Error, and Mean Absolute Error. Then the PSO particle swarm optimization algorithm is used to optimize the fusion model to obtain the optimal structural parameter combination. The optimized multi-stage depressurization structure parameters are as follows: hole diameter t1 = 3.8 mm, hole spacing t2 = 1 mm, hole drawing angle t3 = 6.4°, hole depth t4 = 3.4 mm, and two-layer throttling sleeve spacing t5 = 4 mm. The results show that the peak sound pressure level of the noise before and after optimization is 91.32 dB(A) and 78.2 dB(A), respectively, which is about 14.4% lower than that before optimization. The optimized flow characteristic curve still maintains the percentage flow characteristic and meets the requirement of flow capacity Kv ≥ 60 at the maximum opening. The optimization method provides a reference for the structural optimization of the axial flow control valve.
Associations of different type of physical activity with all-cause mortality in hypertension participants
Authors: Ge Chenliang , Long Binghua , Lu Qingjian , Jiang Zhiyuan , He Yan 
Published: March 2024

AbstractFew studies explored the association of different type of physical activity with all-cause mortality in hypertension (HBP) participants. A retrospective cohort analysis was performed using National Health and Nutrition Examination Survey (NHANES) data to explore association of moderate-intensity physical activity (MPA), vigorous-intensity physical activity (VPA), sedentary behavior with mortality in HBP individuals. Among 10,913 HBP participants followed for a median of 6.2 years, VPA was not associated with a reduction in all-cause mortality compared to participants without VPA in multivariate Cox survival analysis. MPA was linked to lower all-cause mortality at durations of 0–150 min/week (HR, 0.72; 95% CI 0.58–0.88), 150–300 min/week (HR, 0.71; 95% CI 0.52–0.96), and > 300 min/week (HR, 0.61; 95% CI 0.49–0.77) compared to no MPA. Sedentary behavior of 6–8 h/day (HR, 1.35; 95% CI 1.15–1.59) and > 8 h/day (HR, 1.55; 95% CI 1.34–1.79) were associated with increased mortality risk versus < 6 h/day. Further research is needed to explore whether VPA can improve outcomes for HBP individuals and to determine the optimal duration of VPA.MPA is linked to lower mortality risk, indicating its potential as the best physical activity intensity for HBP individuals.
The transcription of the main gene associated with Treacher–Collins syndrome (TCOF1) is regulated by G-quadruplexes and cellular nucleic acid binding protein (CNBP)
Authors: Gil Rosas Mauco , Centola Cielo , Torres Mercedes , Mouguelar Valeria S. , David Aldana P. , Piga Ernesto J. , Gomez Dennis , Calcaterra Nora B. , Armas Pablo , Coux Gabriela 
Published: March 2024

AbstractTreacle ribosome biogenesis factor 1 (TCOF1) is responsible for about 80% of mandibular dysostosis (MD) cases. We have formerly identified a correlation between TCOF1 and CNBP (CCHC-type zinc finger nucleic acid binding protein) expression in human mesenchymal cells. Given the established role of CNBP in gene regulation during rostral development, we explored the potential for CNBP to modulate TCOF1 transcription. Computational analysis for CNBP binding sites (CNBP-BSs) in the TCOF1 promoter revealed several putative binding sites, two of which (Hs791 and Hs2160) overlap with putative G-quadruplex (G4) sequences (PQSs). We validated the folding of these PQSs measuring circular dichroism and fluorescence of appropriate synthetic oligonucleotides. In vitro studies confirmed binding of purified CNBP to the target PQSs (both folded as G4 and unfolded) with Kd values in the nM range. ChIP assays conducted in HeLa cells chromatin detected the CNBP binding to TCOF1 promoter. Transient transfections of HEK293 cells revealed that Hs2160 cloned upstream SV40 promoter increased transcription of downstream firefly luciferase reporter gene. We also detected a CNBP-BS and PQS (Dr2393) in the zebrafish TCOF1 orthologue promoter (nolc1). Disrupting this G4 in zebrafish embryos by microinjecting DNA antisense oligonucleotides complementary to Dr2393 reduced the transcription of nolc1 and recapitulated the craniofacial anomalies characteristic of Treacher Collins Syndrome. Both cnbp overexpression and Morpholino-mediated knockdown in zebrafish induced nolc1 transcription. These results suggest that CNBP modulates the transcriptional expression of TCOF1 through a mechanism involving G-quadruplex folding/unfolding, and that this regulation is active in vertebrates as distantly related as bony fish and humans. These findings may have implications for understanding and treating MD.
Prognostic value of measurement of myocardial extracellular volume using dual-energy CT in heart failure with preserved ejection fraction
Authors: Jiang Ying , Ye Jiaqi , Yang Yang , Zhang Ying , Yan Xiaoyun , Qiang Wenhui , Chen Haixiao , Xu Shuang , Zhou Lei , Qi Rongxing , Zhang Qing 
Published: March 2024

AbstractDiffuse myocardial fibrosis is associated with adverse outcomes in heart failure with preserved ejection fraction (HFpEF). Dual-energy CT (DECT) can noninvasively assess myocardial fibrosis by quantification of extracellular volume (ECV) fraction. This study evaluated the association between ECV measured by DECT and clinical outcomes in patients with HFpEF. 125 hospitalized HFpEF patients were enrolled in this retrospective cohort study. ECV was measured using DECT with late iodine enhancement. The composite endpoint was defined as HFpEF hospitalization and all-cause mortality during the follow-up. During the median follow-up of 10.4 months, 34 patients (27.20%) experienced the composite outcomes, including 5 deaths; and 29 HFpEF hospitalizations. The higher DECT-ECV group had higher rates of composite outcomes than the low ECV group (log-rank X2 = 6.818, P = 0.033). In multivariate Cox regression analysis, the ECV (HR 1.17, 95% CI 1.06–1.30, P = 0.001) and NT-pro BNP (HR 2.83, 95% CI 1.16–6.88, P = 0.022) were independent risk factors for the adverse outcomes. Myocardial ECV measured using DECT was an independent risk factor for adverse outcomes in patients with HFpEF.
High-efficiency and low-hazard artillery recoil reduction technology based on barrel gas reflection
Authors: He Fu , Dai Jinsong , Lin Shengye , Wang Maosen , Su Xiaopeng 
Published: March 2024

AbstractReducing recoil as well as reducing muzzle hazards are important issues in artillery design. This paper presents a barrel gas reflection method for the artillery aiming for efficient recoil reduction while reducing muzzle hazards. The launching process is modeled by coupling the interior ballistic equations and the flow equations of the barrel gas reflection device. The fourth-order Runge–Kutta method was used to solve the model, and the LHS method as well as the Kriging model was used to establish a mapping relationship between the parameters and the effect. To validate the proposed model, shooting experiments are carried out on a 30 mm caliber artillery. The maximum error between the experiment and simulation results was 5.32%. The experiment has demonstrated that the barrel gas reflection method increases the recoil reduction efficiency of artillery by 44.54% and reduces the muzzle hazard by 52.18%. Finally, the barrel gas reflection method can produce effects with the muzzle device at the same time, and it has little effect on the velocity of the projectile muzzle velocity, and it provides a new way of thinking for the development of future artillery recoil reduction technology.
Association of body mass index with long-term outcomes in older adults hospitalized for COVID-19: an observational study
Authors: Putot Alain , Guyot Charline , Manckoundia Patrick , Van Wymelbeke-Delannoy Virginie 
Published: March 2024

AbstractBoth underweight and obesity have been associated with poor prognosis in COVID-19. In an older populations of patients hospitalized for SARS-CoV-2 infection, we aimed to evaluate the association between body mass index (BMI) and short and long-term prognosis. Among 434 consecutive patients aged ≥ 70 years and hospitalized for suspected COVID-19 at a university hospital, 219 patients (median age of 83 years, 53% male) testing positive for COVID-19 and for whom BMI was recorded at admission, agreed to participate. Among them, 39 had a BMI < 20 kg/m2, 73 had a BMI between 20 and 24.9 kg/m2 and 107 had a BMI ≥ 25 kg/m2. After adjustment for confounders, BMI < 20 kg/m2 was associated with a higher risk of one-year mortality (hazard ratio (HR) [95% confidence interval]: 1.75 [1.00–3.05], p = 0.048), while BMI ≥ 25 kg/m2 was not (HR: 1.04 [0.64–1.69], p = 0.9). However, BMI was linearly correlated with both in-hospital acute respiratory failure (p = 0.02) and cardiovascular events (p = 0.07). In this cohort of older patients hospitalized for COVID-19, low BMI, rather than high BMI, appears as an independent risk factor for death after COVID-19. The pathophysiological patterns underlying this excess mortality remain to be elucidated.