bluuebunny/crossref_metadata_2025_split huggingface dataset:
Colitis reduces active social engagement in mice and is ameliorated by supplementation with human microbiota members
Authors: Brown D. Garrett , Murphy Michaela , Cadeddu Roberto , Bell Rickesha , Weis Allison , Chiaro Tyson , Klag Kendra , Morgan Jubel , Coon Hilary , Stephens W. Zac , Bortolato Marco , Round June L. 
Published: March 2024

AbstractMultiple neurological disorders are associated with gastrointestinal (GI) symptoms, including autism spectrum disorder (ASD). However, it is unclear whether GI distress itself can modify aspects of behavior. Here, we show that mice that experience repeated colitis have impaired active social engagement, as measured by interactions with a foreign mouse, even though signs of colitis were no longer present. We then tested the hypothesis that individuals with ASD harbor a microbiota that might differentially influence GI health by performing microbiota transplantation studies into male germfree animals, followed by induction of colitis. Animals that harbor a microbiota from ASD individuals have worsened gut phenotypes when compared to animals colonized with microbiotas from familial neurotypical (NT) controls. We identify the enrichment of Blautia species in all familial NT controls and observe an association between elevated abundance of Bacteroides uniformis and reductions in intestinal injury. Oral treatment with either of these microbes reduces colon injury in mice. Finally, provision of a Blautia isolate from a NT control ameliorates gut injury-associated active social engagement in mice. Collectively, our data demonstrate that past intestinal distress is associated with changes in active social behavior in mice that can be ameliorated by supplementation of members of the human microbiota.
Membrane fission via transmembrane contact
Authors: Spencer Russell K. W. , Santos-Pérez Isaac , Rodríguez-Renovales Izaro , Martinez Galvez Juan Manuel , Shnyrova Anna V. , Müller Marcus 
Published: March 2024

AbstractDivision of intracellular organelles often correlates with additional membrane wrapping, e.g., by the endoplasmic reticulum or the outer mitochondrial membrane. Such wrapping plays a vital role in proteome and lipidome organization. However, how an extra membrane impacts the mechanics of the division has not been investigated. Here we combine fluorescence and cryo-electron microscopy experiments with self-consistent field theory to explore the stress-induced instabilities imposed by membrane wrapping in a simple double-membrane tubular system. We find that, at physiologically relevant conditions, the outer membrane facilitates an alternative pathway for the inner-tube fission through the formation of a transient contact (hemi-fusion) between both membranes. A detailed molecular theory of the fission pathways in the double membrane system reveals the topological complexity of the process, resulting both in leaky and leakless intermediates, with energies and topologies predicting physiological events.
Microbial composition associated with biliary stents in patients undergoing pancreatic resection for cancer
Authors: Blanco-Míguez Aitor , Carloni Sara , Cardenas Cindy , Dioguardi Carola Conca , Lambroia Luca , Capretti Giovanni , Nappo Gennaro , Fugazza Alessandro , Capogreco Antonio , Armanini Federica , Asnicar Francesco , Dubois Leonard , Golzato Davide , Manghi Paolo , Pinto Federica , Scuderi Cristina , Casari Erminia , Montorsi Marco , Anderloni Andrea , Rescigno Maria , Repici Alessandro , Zerbi Alessandro , Peano Clelia , Tamburini Sabrina , Rusconi Roberto , Segata Nicola 
Published: March 2024

AbstractMalignant bile duct obstruction is typically treated by biliary stenting, which however increases the risk of bacterial infections. Here, we analyzed the microbial content of the biliary stents from 56 patients finding widespread microbial colonization. Seventeen of 36 prevalent stent species are common oral microbiome members, associate with disease conditions when present in the gut, and include dozens of biofilm- and antimicrobial resistance-related genes. This work provides an overview of the microbial communities populating the stents.
Investigating the aspect of asymmetry in brain-first versus body-first Parkinson’s disease
Authors: Lövdal S. S. , Carli G. , Orso B. , Biehl M. , Arnaldi D. , Mattioli P. , Janzen A. , Sittig E. , Morbelli S. , Booij J. , Oertel W. H. , Leenders K. L. , Meles S. K. 
Published: March 2024

AbstractParkinson’s disease (PD) is characterized by a progressive loss of dopaminergic neurons in the substantia nigra. Recent literature has proposed two subgroups of PD. The “body-first subtype” is associated with a prodrome of isolated REM-sleep Behavior Disorder (iRBD) and a relatively symmetric brain degeneration. The “brain-first subtype” is suggested to have a more asymmetric degeneration and a prodromal stage without RBD. This study aims to investigate the proposed difference in symmetry of the degeneration pattern in the presumed body and brain-first PD subtypes. We analyzed 123I-FP-CIT (DAT SPECT) and 18F-FDG PET brain imaging in three groups of patients (iRBD, n = 20, de novo PD with prodromal RBD, n = 22, and de novo PD without RBD, n = 16) and evaluated dopaminergic and glucose metabolic symmetry. The RBD status of all patients was confirmed with video-polysomnography. The PD groups did not differ from each other with regard to the relative or absolute asymmetry of DAT uptake in the putamen (p = 1.0 and p = 0.4, respectively). The patient groups also did not differ from each other with regard to the symmetry of expression of the PD-related metabolic pattern (PDRP) in each hemisphere. The PD groups had no difference in symmetry considering mean FDG uptake in left and right regions of interest and generally had the same degree of symmetry as controls, while the iRBD patients had nine regions with abnormal left–right differences (p < 0.001). Our findings do not support the asymmetry aspect of the “body-first” versus “brain-first” hypothesis.
Response spectrum-based analysis of airborne radar random vibration and multi-point control improvement
Authors: Liu Jie , Liu Zezheng , Chen Wanqian , Lv Jing , Jiang Zixuan , Pang Jiahao , Du Libin 
Published: March 2024

AbstractDuring the flight of a UAV (unmanned aerial vehicle), the LiDAR device undergoes random vibrations due to the changing flight attitude and wind speed conditions of the UAV. It is important to control the frequency and amplitude of the vibrations within a reasonable range by means of a damping structure. As the vibrations caused by various factors during flight are random and non-linear, this paper innovates the analysis principle and damping control means for the random vibrations of airborne optoelectronic devices. The response spectrum analysis theory is used to establish the shock response spectrum, and an optimised and improved recursive digital filtering method is used to fit the frequencies of random vibration to the synthetic shock response. Considering the uncertainty of the vibration excitation signal, a virtual excitation method is used for the first time to simulate the random vibration to which the radar may be subjected in the air, and to simplify the calculation steps. The shock plate structure is designed using a multi-point control method to innovate a passive response to the random excitation. Finally, a modal analysis of the synthesised impact response was carried out. It is verified that the first six modal frequencies are controlled within 220 Hz, realising the frequency reduction. The amplitude of the three x, y, and z directions is controlled to within 0.5 mm, thus achieving vibration damping.
Study on the benefit analysis based on whole life cycle carbon emission calculation after the construction of photovoltaic systems in macau's construction waste landfills
Authors: Li Zhaobin , Tang Waifan , Mak Shulun , Li Qingwen , Yu Jiena , Chen Haolin 
Published: March 2024

AbstractThis study seeks to assess both environmental and economic effects associated with installing photovoltaic systems within construction waste landfills in Macau by employing an effective carbon emissions calculation methodology and benefit analysis method. Beginning by outlining characteristics and challenges associated with construction waste landfills, as well as photovoltaic systems used for this application in this paper. Here, we present a detailed outline of our methodology design, outlining its principles of life cycle analysis, data collection processes and the creation of carbon emissions calculation models. Subsequently, we examine photovoltaic systems within Macau's construction waste landfills by studying system design, component selection and operational strategies as well as carbon emission data collection during their operational time period. Under life cycle carbon emissions calculations, we assess the carbon emissions generated from photovoltaic systems as well as conduct an environmental and economic benefit analysis for carbon reduction benefit analysis purposes. This research incorporates sensitivity analysis and uncertainty consideration in order to conduct an extensive benefit analysis. The research results offer strong support for sustainable photovoltaic systems within Macau waste landfills as well as insights to inform planning and policy formation for similar future projects.
A Nuphar lutea plant active ingredient, 6,6′-dihydroxythiobinupharidine, ameliorates kidney damage and inflammation in a mouse model of chronic kidney disease
Authors: Landau Daniel , Khalilia Jannat , Arazi Eden , Tobar Ana Foigelman , Benharroch Daniel , Golan-Goldhirsh Avi , Gopas Jacob , Segev Yael 
Published: March 2024

AbstractChronic Kidney Disease (CKD) associated complications are associated with increased inflammation through the innate immune response, which can be modulated with anti-inflammatory agents. An active ingredient derived from the Nuphar lutea aquatic plant, 6,6′-dihydroxythiobinupharidine (DTBN) has anti-inflammatory properties, mainly through the inhibition of NF-κB. We tested the effects of DTBN on mice with CKD. After preliminary safety and dosing experiments, we exposed 8 weeks old male C57BL/6J mice to adenine diet to induce CKD. Control and CKD animals were treated with IP injections of DTBN (25 μg QOD) or saline and sacrificed after 8 weeks. Serum urea and creatinine were significantly decreased in CKD-DTBN Vs CKD mice. Kidney histology showed a decrease in F4/80 positive macrophage infiltration, damaged renal area, as well as decreased kidney TGF-β in CKD-DTBN Vs CKD mice. Kidney inflammation indices (IL-1β, IL-6 and P-STAT3) were significantly decreased in CKD-DTBN as compared to CKD mice. DTBN treatment showed no apparent damage to tissues in control mice, besides a decrease in weight gain and mild hypoalbuminemia without proteinuria. Thus, DTBN significantly improved renal failure and inflammation indices in CKD mice. Therefore, this and similar substances may be considered as an additional treatment in CKD patients.
Diagnostic utilities of washout CYFRA 21-1 combined with washout thyroglobulin for metastatic lymph nodes in thyroid cancer: a prospective study
Authors: Park Joonseon , An Solji , Kim Kwangsoon , Kim Jeong Soo , Jung Chan Kwon , Bae Ja Seong 
Published: March 2024

AbstractCervical lymph node (LN) metastasis is common in differentiated thyroid cancer (DTC). This study evaluated the utility of the washout CYFRA 21-1 level, combined with the thyroglobulin (Tg) concentration, in terms of diagnosis of LN metastasis. We prospectively enrolled 53 patients who underwent thyroid surgery to treat DTC with lateral cervical LN metastases. Preoperative ultrasound guided needle localization was used to surgical sampling of specific LNs during the operation. The intraoperative washout Tg and CYFRA 21-1 levels were measured in such LNs. The Tg and CYFRA 21-1 levels differed significantly between metastatic and benign LNs. The cutoff values were 2.63 ng/mL for washout CYFRA 21-1 and 22.62 ng/mL for Tg. Combined use of the washout Tg and CYFRA 21-1 levels afforded the highest diagnostic accuracy (92.5%), better than that of individual markers. The sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV) were 94.6%, 90.0%, 91.4%, 93.8%, respectively. The conjunction of the washout CYFRA21-1 and Tg levels enhances the diagnostic accuracy of LN metastasis in DTC patients. The washout CYFRA 21-1 level may be useful when malignancy is suspected, especially in cases where the cytology and washout Tg findings do not provide definitive results.
Network analysis of the proteome and peptidome sheds light on human milk as a biological system
Authors: Dekker Pieter M. , Boeren Sjef , Saccenti Edoardo , Hettinga Kasper A. 
Published: March 2024

AbstractProteins and peptides found in human milk have bioactive potential to benefit the newborn and support healthy development. Research has been carried out on the health benefits of proteins and peptides, but many questions still need to be answered about the nature of these components, how they are formed, and how they end up in the milk. This study explored and elucidated the complexity of the human milk proteome and peptidome. Proteins and peptides were analyzed with non-targeted nanoLC-Orbitrap-MS/MS in a selection of 297 milk samples from the CHILD Cohort Study. Protein and peptide abundances were determined, and a network was inferred using Gaussian graphical modeling (GGM), allowing an investigation of direct associations. This study showed that signatures of (1) specific mechanisms of transport of different groups of proteins, (2) proteolytic degradation by proteases and aminopeptidases, and (3) coagulation and complement activation are present in human milk. These results show the value of an integrated approach in evaluating large-scale omics data sets and provide valuable information for studies that aim to associate protein or peptide profiles from biofluids such as milk with specific physiological characteristics.
Thinking you're different matters more for belonging than being different
Authors: Chadha Sareena , Ha Tiffany , Wood Adrienne 
Published: March 2024

AbstractBelonging to a community is essential for wellbeing, but potentially unattainable for those dissimilar from a group. In the present work, we ask whether belongingness is better predicted by acting and thinking like peers or believing you act and think like peers. Students (N = 1181) reported their belonging and how much they, their friends, and an “average student” endorsed local behavioral norms and general values. We calculated difference scores for behaviors and values capturing perceived similarity to the average, actual similarity to the average, and accuracy around the norm. Key results indicate that perceived behavioral similarity to the average, when controlling for other differences, predicts belonging and most robustly mediates between identity and belonging. Using social network analysis, we find behavioral differences from friends are meaningfully linked to network density and racial homophily. Efficient interventions for enhanced belonging could highlight similarities between students and their peers.
Design and fabrication of electrochemical sensor based on NiO/Ni@C-Fe3O4/CeO2 for the determination of niclosamide
Authors: Darvishi Setayesh , Ensafi Ali A. , Mousaabadi Kimia Zarean 
Published: March 2024

AbstractIn this study, we aimed to enhance and accelerate the electrochemical properties of a glassy carbon-based voltammetric sensor electrode. This was achieved through the modification of the electrode using a nanocomposite derived from a metal–organic framework, which was embedded onto a substrate consisting of metal oxide nanoparticles. The final product was an electrocatalyst denoted as NiO/Ni@C-Fe3O4/CeO2, tailored for the detection of the drug niclosamide. Several techniques, including FT-IR, XRD, XPS, FE-SEM, TEM, and EDS, were employed to characterize the structure and morphology of this newly formed electroactive catalyst. Subsequently, the efficiency of this electrocatalyst was evaluated using cyclic voltammetry and electrochemical impedance spectroscopy techniques. Differential pulse voltammetry was also utilized to achieve heightened sensitivity and selectivity. A comprehensive exploration of key factors such as the catalyst quantity, optimal instrumental parameters, scan rate influence, and pH effect was undertaken, revealing a well-regulated reaction process. Furthermore, the sensor's analytical performance parameters were determined. This included establishing the linear detection range for the target compound within a specified concentration interval of 2.92 nM to 4.97 μM. The detection limit of 0.91 nM, repeatability of 3.1%, and reproducibility of 4.8% of the sensor were calculated, leading to the observation of favorable stability characteristics. Conclusively, the developed electrochemical sensor was successfully employed for the quantification of niclosamide in urine samples and niclosamide tablets. This application highlighted not only the sensor’s high selectivity but also the satisfactory and accurate outcomes obtained from these measurements.
Lesion volume and spike frequency on EEG impact perfusion values in focal cortical dysplasia: a pediatric arterial spin labeling study
Authors: Gennari Antonio Giulio , Bicciato Giulio , Lo Biundo Santo Pietro , Kottke Raimund , Stefanos-Yakoub Ilona , Cserpan Dorottya , O’Gorman Tuura Ruth , Ramantani Georgia 
Published: March 2024

AbstractArterial spin labelling (ASL), an MRI sequence non-invasively imaging brain perfusion, has yielded promising results in the presurgical workup of children with focal cortical dysplasia (FCD)-related epilepsy. However, the interpretation of ASL-derived perfusion patterns remains unclear. Hence, we compared ASL qualitative and quantitative findings to their clinical, EEG, and MRI counterparts. We included children with focal structural epilepsy related to an MRI-detectable FCD who underwent single delay pseudo-continuous ASL. ASL perfusion changes were assessed qualitatively by visual inspection and quantitatively by estimating the asymmetry index (AI). We considered 18 scans from 15 children. 16 of 18 (89%) scans showed FCD-related perfusion changes: 10 were hypoperfused, whereas six were hyperperfused. Nine scans had perfusion changes larger than and seven equal to the FCD extent on anatomical images. Hyperperfusion was associated with frequent interictal spikes on EEG (p = 0.047). Perfusion changes in ASL larger than the FCD corresponded to larger lesions (p = 0.017). Higher AI values were determined by frequent interictal spikes on EEG (p = 0.004). ASL showed FCD-related perfusion changes in most cases. Further, higher spike frequency on EEG may increase ASL changes in affected children. These observations may facilitate the interpretation of ASL findings, improving treatment management, counselling, and prognostication in children with FCD-related epilepsy.
Exploring effective biomarkers and potential immune related gene in small cell lung cancer
Authors: Yunchu Yang , Miyanaga Akihiko , Matsuda Kuniko , Kamio Koichiro , Seike Masahiro 
Published: March 2024

AbstractSmall cell lung cancer (SCLC) is well known as a highly malignant neuroendocrine tumor. Immunotherapy combined with chemotherapy has become a standard treatment for extensive SCLC. However, since most patients quickly develop resistance and relapse, finding new therapeutic targets for SCLC is important. We obtained four microarray datasets from the Gene Expression Omnibus database and screened differentially expressed genes by two methods: batch correction and “RobustRankAggregation”. After the establishment of a protein–protein interaction network through Cytoscape, seven hub genes (AURKB, BIRC5, TOP2A, TYMS, PCNA, UBE2C, and AURKA) with high expression in SCLC samples were obtained by eight CytoHubba algorithms. The Least Absolute Shrinkage and Selection Operator regression and the Wilcoxon test were used to analyze the differences in the immune cells’ infiltration between normal and SCLC samples. The contents of seven kinds of immune cells were considered to differ significantly between SCLC samples and normal samples. A negative association was found between BIRC5 and monocytes in the correlation analysis between immune cells and the seven hub genes. The subsequent in vitro validation of experimental results showed that downregulating the expression of BIRC5 by siRNA can promote apoptotic activity of SCLC cells and inhibit their vitality, migration, and invasion. The use of BIRC5 inhibitor inhibited the vitality of SCLC cells and increased their apoptotic activity. BIRC5 may be a novel therapeutic target option for SCLC.
Day length regulates gonadotrope proliferation and reproduction via an intra-pituitary pathway in the model vertebrate Oryzias latipes
Authors: Royan Muhammad Rahmad , Hodne Kjetil , Nourizadeh-Lillabadi Rasoul , Weltzien Finn-Arne , Henkel Christiaan , Fontaine Romain 
Published: March 2024

AbstractIn seasonally breeding mammals and birds, the production of the hormones that regulate reproduction (gonadotropins) is controlled by a complex pituitary-brain-pituitary pathway. Indeed, the pituitary thyroid-stimulating hormone (TSH) regulates gonadotropin expression in pituitary gonadotropes, via dio2-expressing tanycytes, hypothalamic Kisspeptin, RFamide-related peptide, and gonadotropin-releasing hormone neurons. However, in fish, how seasonal environmental signals influence gonadotropins remains unclear. In addition, the seasonal regulation of gonadotrope (gonadotropin-producing cell) proliferation in the pituitary is, to the best of our knowledge, not elucidated in any vertebrate group. Here, we show that in the vertebrate model Japanese medaka (Oryzias latipes), a long day seasonally breeding fish, photoperiod (daylength) not only regulates hormone production by the gonadotropes but also their proliferation. We also reveal an intra-pituitary pathway that regulates gonadotrope cell number and hormone production. In this pathway, Tsh regulates gonadotropes via folliculostellate cells within the pituitary. This study suggests the existence of an alternative regulatory mechanism of seasonal gonadotropin production in fish.
Impaired extinction of cocaine seeking in HIV-infected mice is accompanied by peripheral and central immune dysregulation
Authors: Buck Lauren A. , Xie Qiaowei , Willis Michelle , Side Christine M. , Giacometti Laura L. , Gaskill Peter J. , Park Kyewon , Shaheen Farida , Guo Lili , Gorantla Santhi , Barker Jacqueline M. 
Published: March 2024

AbstractSubstance use disorders (SUDs) are highly comorbid with HIV infection, necessitating an understanding of the interactive effects of drug exposure and HIV. The relationship between HIV infection and cocaine use disorder is likely bidirectional, with cocaine use directly impacting immune function while HIV infection alters addiction-related behavior. To better characterize the neurobehavioral and immune consequences of HIV infection and cocaine exposure, this study utilizes a humanized mouse model to investigate the outcomes of HIV-1 infection on cocaine-related behaviors in a conditioned place preference (CPP) model, and the interactive effects of cocaine and HIV infection on peripheral and central nervous system inflammation. HIV infection selectively impairs cocaine CPP extinction without effecting reinstatement or cocaine seeking under conflict. Behavioral alterations are accompanied by immune changes in HIV infected mice, including increased prefrontal cortex astrocyte immunoreactivity and brain-region specific effects on microglia number and reactivity. Peripheral immune system changes are observed in human cytokines, including HIV-induced reductions in human TNFα, and cocaine and HIV interactions on GM-CSF levels. Together these data provide new insights into the unique neurobehavioral outcomes of HIV infection and cocaine exposure and how they interact to effect immune responses.