bluuebunny/crossref_metadata_2025_split huggingface dataset:
Chemokine and chemoattractant receptor expression: post-transcriptional regulation
Authors: Hamilton Thomas A , Novotny Michael , Datta Shyamasree , Mandal Palash , Hartupee Justin , Tebo Julie , Li Xiaoxia 
Published: April 2007

AbstractThe magnitude and character of the inflammatory process are determined in part via the trafficking of leukocytes into sites of injury and infection, and this process depends on proper control of the expression of genes encoding chemoattractant peptides and their receptors. Although these controls operate at multiple mechanistic levels, recent evidence indicates that post-transcriptional events governing the half-life of select mRNAs are important determinants. Adenine-uridine rich elements (AREs) located within 3′ untranslated regions (UTRs) confer constitutive mRNA instability and in some cases, stabilization following stimulation by ligands of the Toll-IL-1 receptor (TIR) family. Although the importance of AREs in determining activity and mRNA half-life is well-recognized, the mechanistic scope and diversity remain poorly understood. Using the mouse KC or CXCL1 gene as a model, we have demonstrated that the abundance of mRNA and protein produced during an inflammatory response depends on multiple mechanistically distinct AREs present in the 3′ UTR of the mRNA. The mRNA encoding the receptor for N-terminal formyl-methionine-containing peptides is also unstable and subject to stabilization in response to TIR ligands. These two models can, however, be readily distinguished from one another on the basis of specific stimulus sensitivity and the signaling pathways, through which such stimuli couple to the control of mRNA decay. These models demonstrate the substantial diversity operative in the post-transcriptional regulation of inflammatory gene expression.
The urinary bladder as a physiological reservoir that moderates dehydration in a large desert lizard, the Gila monsterHeloderma suspectum
Authors: Davis Jon R. , DeNardo Dale F. 
Published: March 2007

SUMMARYAnimals inhabiting xeric environments use a variety of behavioral and physiological strategies to balance water budgets. We studied the potential contribution of the urinary bladder to osmoregulation in a large desert lizard, the Gila monster Heloderma suspectum. Here we present results of a series of in vivo laboratory experiments which tested the hypothesis that the Gila monster urinary bladder serves as a physiological reservoir, as in amphibians and chelonians, providing water that buffers increases in plasma osmolality when food and water are unavailable. Adult Gila monsters absorbed water from the urinary bladder into circulation and absorption of water from the urinary bladder and drinking water provided similar osmoregulatory benefits within 24 h, although drinking water provided a more immediate osmotic benefit. During food and water deprivation, plasma osmolality increased 2.5 times faster in lizards with an empty urinary bladder compared with those with a full bladder. During rehydration, stereotyped binge drinking behavior increased body mass nearly 22%, which resulted in a 24%reduction in plasma osmolality and a substantial increase in bladder water within 24 h. These results support our hypothesis and demonstrate for the first time in an adult lizard that the urinary bladder can function as a long-term physiological water reservoir. This trait can provide a critical benefit to osmoregulation during the 2- to 3-month summer dry season characteristic of the deserts that Gila monsters inhabit.
Osmoregulation, ionoregulation and acid–base regulation by the gastrointestinal tract after feeding in the elasmobranch (Squalus acanthias)
Authors: Wood Chris M. , Kajimura Makiko , Bucking Carol , Walsh Patrick J. 
Published: March 2007

SUMMARYIn order to study the physiological consequences of voluntary feeding in the gastrointestinal tract of a ureotelic marine elasmobranch, dogfish (fasted for 96 h) were sampled at various times up to 360 h after consuming a 5–6% ration of teleost fish (hake) under natural feeding conditions. Digestion and absorption were completed between 120 and 360 h post-feeding. The tissue masses of different segments of the gastrointestinal tract increased and decreased markedly as the chyme moved through, mainly because of fluid engorgement rather than hyperplasia. In fasted dogfish, the cardiac and pyloric stomachs contained only small volumes of highly acidic fluid (pH 1.77±1.12, 2.05±0.08) similar in composition to seawater. Feeding resulted in gastric pHs of 3.20±0.31 and 3.95±0.40 at 6 h, followed by slow declines through 60 h. An alkaline tide in the blood also occurred at 6 h. In the face of large changing masses of highly acidic chyme in the stomachs, the pH (6.50±0.10), ionic composition and volume of chyme in the intestine (spiral valve) were precisely regulated from 6 to 60 h post-feeding at very different values from those in the stomachs, and intestinal HCO –3 remained low (5.12±0.83 mmol l–1). The colon was usually empty and its pH constant at 7.20±0.16 at all times. Despite the ingestion of strongly hypo-osmotic teleost tissue, the osmolality of the chyme remained in equilibrium with that of the blood plasma in all segments at all times after feeding. Much of the osmotic equilibration was because of the secretion of urea into the chyme,particularly in the intestine. After feeding, gastric fluid concentrations of Na+ and Mg2+ declined, K+ and Ca2+increased, whereas Cl– exhibited little change, indicating that additional drinking of seawater was minimal. Na+,K+, water and especially Cl– were absorbed in the intestine, whereas Mg2+ and Ca2+ were largely excluded. Our results illustrate the complex integration of digestive and ionoregulatory function in the elasmobranch digestive tract, and marked differences from the teleost pattern.
Spectral properties of identified polarized-light sensitive interneurons in the brain of the desert locustSchistocerca gregaria
Authors: Kinoshita Michiyo , Pfeiffer Keram , Homberg Uwe 
Published: March 2007

SUMMARYMany migrating animals employ a celestial compass mechanism for spatial navigation. Behavioral experiments in bees and ants have shown that sun compass navigation may rely on the spectral gradient in the sky as well as on the pattern of sky polarization. While polarized-light sensitive interneurons(POL neurons) have been identified in the brain of several insect species,there are at present no data on the neural basis of coding the spectral gradient of the sky. In the present study we have analyzed the chromatic properties of two identified POL neurons in the brain of the desert locust. Both neurons, termed TuTu1 and LoTu1, arborize in the anterior optic tubercle and respond to unpolarized light as well as to polarized light. We show here that the polarized-light response of both types of neuron relies on blue-sensitive photoreceptors. Responses to unpolarized light depended on stimulus position and wavelength. Dorsal unpolarized blue light inhibited the neurons, while stimulation from the ipsilateral side resulted in opponent responses to UV light and green light. While LoTu1 was inhibited by UV light and was excited by green light, one subtype of TuTu1 was excited by UV and inhibited by green light. In LoTu1 the sensitivity to polarized light was at least 2 log units higher than the response to unpolarized light stimuli. Taken together, the spatial and chromatic properties of the neurons may be suited to signal azimuthal directions based on a combination of the spectral gradient and the polarization pattern of the sky.
Neuroprotection from secondary injury by polyethylene glycol requires its internalization
Authors: Liu-Snyder Peishan , Logan Melissa Peasley , Shi Riyi , Smith Daniel T. , Borgens Richard Ben 
Published: March 2007

SUMMARYPolyethylene glycol (PEG) is well known to both fuse and repair cell membranes. This capability has been exploited for such diverse usages as the construction of hybridomas and as a reparative agent following neurotrauma. The latter development has proceeded through preclinical testing in cases of naturally induced paraplegia in dogs. The mechanisms of action of polymer-mediated neurorepair/neuroprotection are still under investigation. It is likely that the unique interaction of hydrophilic polymers with the mechanical properties of cell membranes in concert with an ability to interfere with mechanisms of secondary injury such as the production of highly reactive oxygen species (ROS or `free radicals') is the basis for neuroprotection by polymers.Here we provide further evidence that the ability of PEG to reduce or limit secondary injury and/or lipid peroxidation (LPO) of membranes requires entry of PEG into the cytosol, further suggesting a physical interaction with the membranes of organelles such as mitochondria as the initial event leading to neurorepair/neuroprotection.We have evaluated this relationship in vitro using acrolein, a potent endogenous toxin that is a product of LPO. Acrolein can pass through cell membranes with ease, inducing progressive LPO in `bystander' cells, and the production of even more acrolein by inducing its own production. Immediate application of PEG (10 mmol l–1, 2000 Da) to poisoned neurons in vitro was unable to rescue them from necrosis and death. Furthermore, three-dimensional confocal microscopy of fluorescently decorated PEG shows that it does not enter these cells for up to 2 h after application. By this time the mechanisms of necrosis are likely irreversible. Additionally,severe oxygen and or glucose deprivation of spinal cord white matter in vitro also initiates LPO. Addition of potent free radical scavengers such as ascorbic acid or superoxide dismutase (SOD) is able to interfere with this process, but PEG is not. Taken together, these data are consistent with the hypothesis that PEG is able to rescue mechanically damaged cells, based on a restructuring of the damaged plasmalemma. Furthermore, in compromised cells with an intact cell membrane, PEG must first gain access to the cytosol where this same capability may be useful in restoring the integrity of cellular organelles such as mitochondria, though the intracellular concentration of the polymer must be significant relative to the concentration of toxins produced by LPO in order to rescue the cell.
Just drop it and run: the effect of limb autotomy on running distance and locomotion energetics of field crickets (Gryllus bimaculatus)
Authors: Fleming Patricia A. , Bateman Philip W. 
Published: March 2007

SUMMARYThis is the first study to examine the direct metabolic costs of autotomy,the voluntary shedding of an appendage as an escape mechanism, in invertebrates. We investigated the effects of limb autotomy upon endurance and metabolic cost of locomotion in the field cricket Gryllus bimaculatus. Compared with control (intact) crickets, animals that had autotomised a single hindlimb were slower, stopped more often, moved a shorter distance and expended more energy doing so. Both the cost of locomotion (COT)and minimal cost of locomotion (MCOT) were significantly higher for autotomised animals. We compare these data with locomotion energetics of 36 other invertebrate species, and discuss the results in terms of the biomechanics of walking in crickets.
The identifying extended Kalman filter: Parametric system identification of a vehicle handling model
Authors: Best M C , Newton A P , Tuplin S 
Published: April 2007

This article considers a novel method for estimating parameters in a vehicle-handling dynamic model using a recursive filter. The well-known extended Kalman filter - which is widely used for real-time state estimation of vehicle dynamics - is used here in an unorthodox fashion; a model is prescribed for the sensors alone, and the state vector is replaced by a set of unknown model parameters. With the aid of two simple tuning parameters, the system self-regulates its estimates of parameter and sensor errors, and hence smoothly identifies optimal parameter choices. The method makes one contentious assumption that vehicle lateral velocity (or body sideslip angle) is available as a measurement, along with the more conventionally available yaw velocity state. However, the article demonstrates that by using the new generation of combined GPS/inertial body motion measurement systems, a suitable lateral velocity signal is indeed measurable. The system identification is thus demonstrated in simulation, and also proved by successful parametrization of a model, using test vehicle data. The identifying extended Kalman filter has applications in model validation - for example, acting as a reference between vehicle behaviour and higher-order multi-body models - and it could also be operated in a real-time capacity to adapt parameters in model-based vehicle control applications.
Optimization of floridoside production in the red alga Mastocarpus stellatus: pre-conditioning, extraction and seasonal variations
Authors: Kerjean Véronique , Morel Bénédicte , Stiger Valérie , Bessières Marie-Anne , Simon-Colin Christèle , Magné Christian , Deslandes Eric 
Published: April 2007

Abstract
The red alga Mastocarpus stellatus is widely found on the coastline of Brittany (France) and it was previously reported to contain high amounts of floridoside, a well-known glycoside in red algae. Therefore, we aimed at evaluating the potential interest of M. stellatus for industrial purposes. Floridoside extraction was optimized, hydroethanolic mixture being the most efficient extractant compatible with industrial requirements. Floridoside yield was increased significantly through pre-treatment and conditioning of the alga before extraction. Thus, salt stress and drying procedure both resulted in an increase in floridoside concentration. Studies of seasonal variations of floridoside content in this species showed that maximal levels were recovered in autumn. We now propose an optimized procedure for M. stellatus valorization, especially for biomedical applications.
Evolution of Coadaptation in a Subdivided Population
Authors: Takahasi K Ryo 
Published: April 2007

Abstract
The interplay between population subdivision and epistasis is investigated by studying the fixation probability of a coadapted haplotype in a subdivided population. Analytical and simulation models are developed to study the evolutionary fate of two conditionally neutral mutations that interact epistatically to enhance fitness. We find that the fixation probability of a coadapted haplotype shows a marked increase when the population is genetically subdivided and subpopulations are loosely connected by migration. Moderate migration and isolation allow the propagation of the mutant alleles across subpopulations, while at the same time preserving the favorable allelic combination established within each subpopulation. Together they create the condition most favorable for the ultimate fixation of the coadapted haplotype. On the basis of the analytical and simulation results, we discuss the fundamental role of population subdivision and restricted gene flow in promoting the evolution of functionally integrated systems, with some implications for the shifting-balance theory of evolution.
The Genetic Basis of Zinc Tolerance in the Metallophyte Arabidopsis halleri ssp. halleri (Brassicaceae): An Analysis of Quantitative Trait Loci
Authors: Willems Glenda , Dräger Dörthe B , Courbot Mikael , Godé Cécile , Verbruggen Nathalie , Saumitou-Laprade Pierre 
Published: April 2007

Abstract
The species Arabidopsis halleri, an emerging model for the study of heavy metal tolerance and accumulation in plants, has evolved a high level of constitutive zinc tolerance. Mapping of quantitative trait loci (QTL) was used to investigate the genetic architecture of zinc tolerance in this species. A first-generation backcross progeny of A. halleri ssp. halleri from a highly contaminated industrial site and its nontolerant relative A. lyrata ssp. petraea was produced and used for QTL mapping of zinc tolerance. A genetic map covering most of the A. halleri genome was constructed using 85 markers. Among these markers, 65 were anchored in A. thaliana and revealed high synteny with other Arabidopsis genomes. Three QTL of comparable magnitude on three different linkage groups were identified. At all QTL positions zinc tolerance was enhanced by A. halleri alleles, indicating directional selection for higher zinc tolerance in this species. The two-LOD support intervals associated with these QTL cover 24, 4, and 13 cM. The importance of each of these three regions is emphasized by their colocalization with HMA4, MTP1-A, and MTP1-B, respectively, three genes well known to be involved in metal homeostasis and tolerance in plants.
High Frequency of Mutations That Expand the Host Range of an RNA Virus
Authors: Ferris Martin T , Joyce Paul , Burch Christina L 
Published: April 2007

Abstract
The ability of a virus population to colonize a novel host is predicted to depend on the equilibrium frequency of potential colonists (i.e., genotypes capable of infecting the novel host) in the source population. In this study, we investigated the determinants of the equilibrium frequency of potential colonists in the RNA bacteriophage ϕ6. We isolated 40 spontaneous mutants capable of infecting a novel Pseudomonas syringae host and sequenced their host attachment genes to identify the responsible mutations. We observed 16 different mutations in the host attachment gene and used a new statistical approach to estimate that 39 additional mutations were missed by our screen. Phenotypic and fitness assays confirmed that the proximate mechanism underlying host range expansion was an increase in the ability to attach to the novel host and that acquisition of this ability most often imposed a cost for growth rate on two standard hosts. Considered in a population genetic framework, our data suggest that host range mutations should exist in phage populations at an equilibrium frequency (3 × 10−4) that exceeds the phage mutation rate by more than two orders of magnitude. Thus, colonization of novel hosts is unlikely to be limited by an inability to produce appropriate mutations.
Variance of the Parental Genome Contribution to Inbred Lines Derived From Biparental Crosses
Authors: Frisch Matthias , Melchinger Albrecht E 
Published: April 2007

Abstract
The expectation of the parental genome contribution to inbred lines derived from biparental crosses or backcrosses is well known, but no theoretical results exist for its variance. Our objective was to derive the variance of the parental genome contribution to inbred lines developed by the single-seed descent or double haploid method from biparental crosses or backcrosses. We derived formulas and tabulated results for the variance of the parental genome contribution depending on the chromosome lengths and the mating scheme used for inbred line development. A normal approximation of the probability distribution function of the parental genome contribution fitted well the exact distribution obtained from computer simulations. We determined upper and lower quantiles of the parental genome contribution for model genomes of sugar beet, maize, and wheat using normal approximations. These can be employed to detect essentially derived varieties in the context of plant variety protection. Furthermore, we outlined the application of our results to predict the response to selection. Our results on the variance of the parental genome contribution can assist breeders and geneticists in the design of experiments or breeding programs by assessing the variation around the mean parental genome contribution for alternative crossing schemes.
Genetic Modifiers of Drosophila Palmitoyl–Protein Thioesterase 1-Induced Degeneration
Authors: Buff Haley , Smith Alexis C , Korey Christopher A 
Published: April 2007

AbstractInfantile neuronal ceroid lipofuscinosis (INCL) is a pediatric neurodegenerative disease caused by mutations in the human CLN1 gene. CLN1 encodes palmitoyl–protein thioesterase 1 (PPT1), suggesting an important role for the regulation of palmitoylation in normal neuronal function. To further elucidate Ppt1 function, we performed a gain-of-function modifier screen in Drosophila using a collection of enhancer–promoter transgenic lines to suppress or enhance the degeneration produced by overexpression of Ppt1 in the adult visual system. Modifier genes identified in our screen connect Ppt1 function to synaptic vesicle cycling, endo-lysosomal trafficking, synaptic development, and activity-dependent remodeling of the synapse. Furthermore, several homologs of the modifying genes are known to be regulated by palmitoylation in other systems and may be in vivo substrates for Ppt1. Our results complement recent work on mouse Ppt1−/− cells that shows a reduction in synaptic vesicle pools in primary neuronal cultures and defects in endosomal trafficking in human fibroblasts. The pathways and processes implicated by our modifier loci shed light on the normal cellular function of Ppt1. A greater understanding of Ppt1 function in these cellular processes will provide valuable insight into the molecular etiology of the neuronal dysfunction underlying the disease.
DDB2, DDB1A and DET1 Exhibit Complex Interactions During Arabidopsis Development
Authors: Al Khateeb Wesam M , Schroeder Dana F 
Published: April 2007

Abstract
Damaged DNA-binding proteins 1 and 2 (DDB1 and DDB2) are subunits of the damaged DNA-binding protein complex (DDB). DDB1 is also found in the same complex as DE-ETIOLATED 1 (DET1), a negative regulator of light-mediated responses in plants. Arabidopsis has two DDB1 homologs, DDB1A and DDB1B. ddb1a single mutants have no visible phenotype while ddb1b mutants are lethal. We have identified a partial loss-of-function allele of DDB2. To understand the genetic interaction among DDB2, DDB1A, and DET1 during Arabidopsis light signaling, we generated single, double, and triple mutants. det1 ddb2 partially enhances the short hypocotyl and suppresses the high anthocyanin content of dark-grown det1 and suppresses the low chlorophyll content, early flowering time (days), and small rosette diameter of light-grown det1. No significant differences were observed between det1 ddb1a and det1 ddb1a ddb2 in rosette diameter, dark hypocotyl length, and anthocyanin content, suggesting that these are DDB1A-dependent phenotypes. In contrast, det1 ddb1a ddb2 showed higher chlorophyll content and later flowering time than det1 ddb1a, indicating that these are DDB1A-independent phenotypes. We propose that the DDB1A-dependent phenotypes indicate a competition between DDB2- and DET1-containing complexes for available DDB1A, while, for DDB1A-independent phenotypes, DDB1B is able to fulfill this role.