bluuebunny/crossref_metadata_2025_split huggingface dataset:
Nematodes from the Gulf of California. Part 2. Ceramonema nasobema sp. n. (Nematoda: Ceramonematidae)
Authors: Holovachov Oleksandr , Mundo-Ocampo Manuel , De Ley Irma Tandingan , De Ley Paul 
Published: October 2008

AbstractAn unusual new ceramonematid, Ceramonema nasobema sp. n., is described using light and scanning electron microscopy. It is particularly characterised by the presence of a perioral tube projecting 5.5-7.0 μm anterior to the lips, moderately long body (0.86-1.09 mm), relatively small number of body annules (121-134), weakly developed zygapophyses, absence of intracuticular vacuoles, pronounced sexual dimorphism in amphid shape with the male ventral amphidial branch extending as far posterior as the 55-80th annule (no extension in females), barrel-shaped stoma, sigmoid and anteriorly inclined vagina without sclerotisations, gubernaculum with dorsal apophyses and relatively uniform cloacal annules. The new species differs from all other known species of Ceramonema especially by the shape of the amphid in males, the strongly projecting perioral tube and the inclined, sigmoid, vagina. Additional data on morphology of Ceramonema algoensis (from Natal Bay, South Africa) are also provided as this species has the most prominent perioral tube among previously described members of the genus.
Bursaphelenchus rufipennis n. sp. (Nematoda: Parasitaphelenchinae) and redescription of Ektaphelenchus obtusus (Nematoda: Ektaphelenchinae), associates from nematangia on the hind wings of Dendroctonus rufipennis (Coleoptera: Scolytidae)
Authors: Kanzaki Natsumi , Giblin-Davis Robin M. , Cardoza Yasmin J. , Ye Weimin , Raffa Kenneth F. , Center Barbara J. 
Published: October 2008

Abstract
Two species of aphelench, Bursaphelenchus rufipennis n. sp. and
Ektaphelenchus obtusus, were isolated from the 'nematangia', cocoon-like
structures found at the base of the hind wings of Dendroctonus rufipennis.
The nematangia contained adult females of E. obtusus and the dauer juveniles
of B. rufipennis n. sp. Only B. rufipennis n. sp. could be cultured on
Monilinia fructicola on LGPDA (lactic acid-treated, glycerol-supplemented,
potato dextrose agar). The new species of Bursaphelenchus is described and
figured and some additional morphological characters are ascribed to E.
obtusus, E. josephi, E. sandiaensis, E. smaelus (= E. prolobos) and E.
terebranus after examination of type and/or voucher specimens.
Bursaphelenchus rufipennis n. sp. has an adult body length of ca 500-1000
μm, medium a ratios (ca 25-38 for females and ca 30-40 for males), b ratios
of ca 8-13 (female) and 7-11 (male), c ratios of ca 15-22 (female and male),
c′ ratios of ca 3-4 (female) and ca 2-3 (male), and is characterised by
three incisures in the lateral field, mitten-shaped spicules and a conical
female tail that curves ventrally and possesses a variable tail tip. The new
species is morphologically closest to B. corneolus, B. curvicaudatus, B.
gerberae, B. paracorneolus and B. talonus. Morphological examination of type
and/or voucher specimens of five Ektaphelenchus species revealed coarse
transverse body annulation and three pairs of male caudal papillae (except
for the two species where males are not described). Clear typological
differences were observed among these five Ektaphelenchus species in the
structure of the lip region, presence/absence of stylet knobs and male
spicule morphology. Although these characters have not been consistently
documented in the past, they may be diagnostic for species in the genus.
Molecular phylogenetic analysis based on SSU and D2/D3 LSU sequences
revealed that B. rufipennis n. sp. was closest to B. paracorneolus and that
E. obtusus was closest to species of Ektaphelenchoides and a
Cryptaphelenchus sp.
Diversity of Meloidogyne arenaria using morphological, cytological and molecular approaches
Authors: Almeida Maria Ritta , Carneiro Regina , dos Santos Marcilene , Tigano Myrian , Gomes Ana Cristina , Mota Fabiane Castro 
Published: October 2008

AbstractThirteen Meloidogyne arenaria isolates representing two cytological types (3n = 51-56, 2n = 42-48) and four enzymatic phenotypes (esterase and malate dehydrogenase: A3N1, A2N1, A1N1, A2N3) were studied using different approaches. The analysis of molecular markers showed a high level of polymorphism among the isolates. The trees obtained with RAPD or ISSR polymorphisms showed concordant results and agree with morphological studies. By considering morphometrical and morphological features, it was possible to conclude that the isolate with enzymatic phenotype A2N3 race 1 was the M. arenaria described in 1949 by Chitwood and appearing clearly separated in the trees, as well as in the outgroups. The seven isolates with phenotype A2N1 from different localities and isolate A1N1 can be considered morphometrically typical of M. arenaria race 2 and they were apparently clustered by geographical origin. Morphologically, they differed from isolate A2N3 race 1. The two isolates with phenotype A3N1 appeared to be closely related to the isolate of M. morocciensis and, considering all of the features described for this species, were identified as such. The two isolates A2N3 race 2 were identified either as an atypical M. arenaria or an unidentified species (females and males having atypical stylets), and clustered together and separated from other M. arenaria isolates with high bootstrap support. The same M. arenaria isolates were tested with the species-specific molecular marker, type SCAR. A fragment of 420 bp was obtained for ten isolates of M. arenaria, including the atypical A2N3 race 2 and M. morocciensis. This fragment was not amplified for three typical A2N1 isolates of M. arenaria.
Distribution, population density, race and type determination of soybean cyst nematode, Heterodera glycines, in Iran
Authors: Salati Mansour , Riggs Robert , Maafi Zahra Tanha 
Published: October 2008

AbstractThe soybean cyst nematode (SCN), Heterodera glycines, found in most soybean growing regions in the world, is considered the most economically damaging pathogen of soybean worldwide. A survey conducted in the northern provinces of Mazandaran and Golestan, the main soybean-producing areas in Iran, revealed SCN was widespread in different localities of these regions. Of the 55 and 88 soil samples collected from soybean fields in Mazandaran and Golestan provinces, respectively, ten (18.8%) and 23 (26%) samples were infested with H. glycines; the population densities of second-stage juveniles (J2) and eggs ranged from 500 to 60 000 and 500 to ≥100 000 per 250 cm3 soil, respectively. These population densities of H. glycines are indicative of reductions in soybean yield. HG Type tests were conducted on 16 field populations. HG Type 0 (race 3) was the most common with 94% frequency, whereas HG Type 7 (race 6) was found in 6% of tested populations. Most populations of H. glycines parasitised PI88788 and PI548316. Eight of the most commonly used soybean cultivars were tested against H. glycines HG Type 0; seven of them, Sepideh, Sahar (Pershing), Gorgan 3, Williams 82, JK (Sari), BP (Telar) and Hill, had high female indices and were considered susceptible to HG Type 0. Only the cultivar DPX showed low female indices and was resistant to race 3. The initial observations showed that the first life cycle of SCN required 30-34 days in early-planted fields (late May and early June), whereas in late-planted fields (early July), white females were visible 20 days after planting. Several generations could be expected in a single growing season under field conditions in northern Iran.
Reducing Drag and Oscillation of Spheres Used for Buoyancy in Oceanographic Moorings
Authors: Hurley Jane , de Young Brad , Williams Christopher D. 
Published: October 2008

AbstractNumerical and laboratory results of the drag characteristics are presented for different configurations of an underwater buoyancy package. It is shown that the drag and oscillation of an underwater sphere can be reduced substantially with the addition of a shaped cowling. The influence of several different cowling shapes on the drag and lift are determined. The results from a numerical fluid dynamical calculation are compared and laboratory measurements are scaled. Both the dynamic and static components of drag and lift are presented. The drag force for an underwater sphere can be reduced by more than 80% for a full teardrop-shaped cowling. A truncated teardrop, more practical for real applications, will still reduce the drag by 60%–70%. In addition to the drag, the amplitude of oscillations driven by eddy shedding is similarly reduced.
Influence of Cloud-Top Height and Geometric Thickness on a MODIS Infrared-Based Ice Cloud Retrieval
Authors: Garrett Kevin J. , Yang Ping , Nasiri Shaima L. , Yost Christopher R. , Baum Bryan A. 
Published: October 2008

Abstract
The retrieval of ice cloud microphysical and optical properties from satellite-based infrared observation remains a challenging research topic, partly because of the sensitivity of observed infrared radiances to many surface and atmospheric parameters that vary on fine spatial and temporal scales. In this study, the sensitivity of an infrared-based ice cloud retrieval to effective cloud temperature is investigated, with a focus on the effects of cloud-top height and geometric thickness. To illustrate the sensitivity, the authors first simulate brightness temperatures at 8.5 and 11.0 μm using the discrete ordinates radiative transfer (DISORT) model for five cloud-top heights ranging from 8 to 16 km and for varying cloud geometric thicknesses of 1, 2, 3, and 5 km. The simulations are performed across a range of visible optical thicknesses from 0.1 to 10 and ice cloud effective diameters from 30 to 100 μm. Furthermore, the effective particle size and optical thickness of ice clouds are retrieved from the Moderate Resolution Imaging Spectroradiometer (MODIS) measurements on the basis of a lookup-table approach. Specifically, the infrared brightness temperatures are simulated from the collocated Atmospheric Infrared Sounder (AIRS) level-2 product at 28 atmospheric levels and prescribed ice cloud parameters. Variations of the retrieved effective particle size and optical thickness versus cloud-top height and geometric thickness are investigated. Results show that retrievals based on the 8.5- and 11.0-μm bispectral approach are most valid for cloud-top temperatures of less than 224 K with visible optical thickness values between 2 and 5. The present retrievals are also compared with the collection-5 MODIS level-2 ice cloud product.
Observations of Gap Flow in the Wipp Valley on 20 October 1999: Evidence of Subsidence
Authors: Marić Tomislav , Durran Dale R. 
Published: October 2008

Abstract
Using extensive observations collected from various platforms around the Brenner Pass in the Austrian Alps during the Mesoscale Alpine Programme, a detailed description of the kinematic and thermodynamic structure of the shallow-foehn event that occurred on 20 October 1999 in the Wipp Valley is constructed. Downstream of the gap the flow develops a well-mixed surface layer capped by a relatively strong temperature inversion of 5–6 K. Such inversions are often assumed to be kinematically similar to the free surface at the top of a liquid; however, the data suggest the presence of strong subsidence through the mean position of the inversion layer capping the flow. Such subsidence is supported by in situ aircraft observations and Doppler lidar measurements but is not consistent with the observed turbulent heat fluxes, which are too small to account for the diabatic heating required by the isentrope-relative downward velocities. The 1-Hz time resolution of the P3 data may, however, be too coarse to correctly capture the full turbulent heat flux.
Lee-Wave Resonances over Double Bell-Shaped Obstacles
Authors: Grubišić Vanda , Stiperski Ivana 
Published: October 2008

Abstract
Lee-wave resonance over double bell-shaped obstacles is investigated through a series of idealized high-resolution numerical simulations with the nonhydrostatic Coupled Ocean–Atmosphere Mesoscale Prediction System (COAMPS) model using a free-slip lower boundary condition. The profiles of wind speed and stability as well as terrain derive from observations of lee-wave events over the Sierra Nevada and Inyo Mountains from the recently completed Terrain-Induced Rotor Experiment (T-REX).
Numerical experiments show that double bell-shaped obstacles promote trapped lee waves that are in general shorter than those excited by an isolated ridge. While the permissible trapped lee-wave modes are determined by the upstream atmospheric structure, primarily vertical wind shear, the selected lee-wave wavelengths for two obstacles that are close or equal in height are dictated by the discrete terrain spectrum and correspond to higher harmonics of the primary orographic wavelength, which is equal to the ridge separation distance. The exception is the smallest ridge separation distance examined, one that corresponds to the Owens Valley width and is closest to the wavelength determined by the given upstream atmospheric structure, for which the primary lee-wave and orographic wavelengths were found to nearly coincide.
The influence two mountains exert on the overall lee-wave field is found to persist at very large ridge separation distances. For the nonlinear nonhydrostatic waves examined, the ridge separation distance is found to exert a much stronger control over the lee-wave wavelengths than the mountain half-width. Positive and negative interferences of lee waves, which can be detected through their imprint on wave drag and wave amplitudes, were found to produce appreciable differences in the flow structure mainly over the downstream peak, with negative interference characterized by a highly symmetric flow pattern leading to a low drag state.
ENSO and Extreme Rainfall Events in South America
Authors: Grimm Alice M. , Tedeschi Renata G. 
Published: October 2008

Abstract
The influence of the opposite phases of ENSO on the frequency of extreme rainfall events over South America is analyzed for each month of the ENSO cycle on the basis of a large set of daily station rainfall data and compared with the influence of ENSO on the monthly total rainfall. The analysis is carried out with station data and their gridded version and the results are consistent. Extreme events are defined as 3-day mean precipitation above the 90th percentile. The mean frequencies of extreme events are determined for each month and for each category of year (El Niño, La Niña, and neutral), and the differences between El Niño and neutral years and La Niña and neutral years are computed. Changes in the mean intensity of extreme events are also investigated. Significant ENSO signals in the frequency of extreme events are found over extensive regions of South America during different periods of the ENSO cycle. Although ENSO-related changes in intensity show less significance and spatial coherence, there are some robust changes in several regions, especially in southeastern South America.
The ENSO-related changes in the frequency of extreme rainfall events are generally coherent with changes in total monthly rainfall quantities. However, significant changes in extremes are much more extensive than the corresponding changes in monthly rainfall because the highest sensitivity to ENSO seems to be in the extreme range of daily precipitation. This is important, since the most dramatic consequences of climate variability result from changes in extreme events.
The pattern of frequency changes produced by El Niño and La Niña episodes with respect to neutral years is roughly symmetric, but there are several examples of nonlinearity in the ENSO regional teleconnections.
Revisiting Climate Region Definitions via Clustering
Authors: Lund Robert , Li Bo 
Published: October 2008

AbstractThis paper introduces a new distance metric that enables the clustering of general climatic time series. Clustering methods have been frequently used to partition a domain of interest into distinct climatic zones. However, previous techniques have neglected the time series (autocorrelation) component and have also handled seasonal features in a suboptimal way. The distance proposed here incorporates the seasonal mean and autocorrelation structures of the series in a natural way; moreover, trends and covariate effects can be considered. As an important by-product, the methods can be used to statistically assess whether two stations can serve as reference stations for one another. The methods are illustrated by partitioning 292 weather stations within the state of Colorado into six different zones.
The Effect of Rain–No Rain Intermittency on the Estimation of the Universal Multifractals Model Parameters
Authors: de Montera L. , Barthès L. , Mallet C. , Golé P. 
Published: October 2008

Abstract
The multifractal properties of rain are investigated within the framework of universal multifractals. The database used in this study includes measurements performed over several months in different locations by means of a disdrometer, the dual-beam spectropluviometer (DBS). An assessment of the effect of the rain–no rain intermittency shows that the analysis of rain-rate time series may lead to a spurious break in the scaling and to erroneous parameters. The estimation of rain multifractal parameters is, therefore, performed on an event-by-event basis, and they are found to be significantly different from those proposed in scientific literature. In particular, the parameter H, which has often been estimated to be 0, is more likely to be 0.53, thus meaning that rain is a fractionally integrated flux (FIF). Finally, a new model is proposed that simulates high-resolution rain-rate time series based on these new parameters and on a simple threshold.
Seasonal Propagation of Sea Level along the Equator in the Atlantic
Authors: Bunge Lucia , Clarke Allan J. 
Published: October 2008

Abstract
In the equatorial Atlantic the sea surface height (SSH) anomaly field is dominated by an annual signal propagating eastward. This signal has been previously interpreted in terms of propagating waves. In this article it is argued that this propagating signal is not a free equatorial Kelvin wave because the phase velocity observed is too small compared to first, second, or third baroclinic mode Kelvin waves, and is not the result of an equatorial forced wave because the zonal wind stress does not show a similar propagation. Rather, it is suggested that the eastward propagation in SSH is due to the sum of two independent modes of variability: one mainly driven by the wind stress curl off the equator, and the other driven by the zonal wind stress along the equator. These two modes are uncorrelated in time and space and therefore can be conveniently separated by an empirical orthogonal function analysis of the equatorial Atlantic sea surface height. The first mode explains 74% of the variance, is one-signed in longitude, and is interpreted as the variability of the warm water volume above the thermocline. The second mode explains 24% of the variance, consists of an east–west tilt along the equator, and is driven by variations of the zonal equatorial wind stress.
TGF-β as a candidate bone marrow niche signal to induce hematopoietic stem cell hibernation
Authors: Yamazaki Satoshi , Iwama Atsushi , Takayanagi Shin-ichiro , Eto Koji , Ema Hideo , Nakauchi Hiromitsu 
Published: October 2008

AbstractHematopoietic stem cells (HSCs) reside in a bone marrow niche in a nondividing state from which they occasionally are aroused to undergo cell division. Yet, the mechanism underlying this unique feature remains largely unknown. We have recently shown that freshly isolated CD34−KSL hematopoietic stem cells (HSCs) in a hibernation state exhibit inhibited lipid raft clustering. Lipid raft clustering induced by cytokines is essential for HSCs to augment cytokine signals to the level enough to re-enter the cell cycle. Here we screened candidate niche signals that inhibit lipid raft clustering, and identified that transforming growth factor-β (TGF-β) efficiently inhibits cytokine-mediated lipid raft clustering and induces HSC hibernation ex vivo. Smad2 and Smad3, the signaling molecules directly downstream from and activated by TGF-β receptors were specifically activated in CD34−KSL HSCs in a hibernation state, but not in cycling CD34+KSL progenitors. These data uncover a critical role for TGF-β as a candidate niche signal in the control of HSC hibernation and provide TGF-β as a novel tool for ex vivo modeling of the HSC niche.
Stroma-dependent apoptosis in clonal hematopoietic precursors correlates with expression of PYCARD
Authors: Mhyre Andrew J. , Marcondes A. Mario , Spaulding Emily Y. , Deeg H. Joachim 
Published: October 2008

Abstract
The role of the marrow microenvironment in the pathophysiology of myelodysplastic syndromes (MDSs) remains controversial. Using stromal/hematopoietic cell cocultures, we investigated the effects of stroma-derived signals on apoptosis sensitivity in hematopoietic precursors. The leukemia-derived cell line KG1a is resistant to proapoptotic ligands. However, when cocultured with the human stromal cell line HS5 (derived from normal marrow) and exposed to tumor necrosis factor-α (TNF-α), KG1a cells showed caspase-3 activation and induction of apoptosis. Apoptosis was contact dependent. Identical results were obtained in coculture with primary stroma. Gene-expression profiling of KG1a cells identified coculture-induced up-regulation of various genes involved in apoptosis, including PYCARD. Suppression of PYCARD expression in KG1a by miRNA interfered with apoptosis. Knockdown of the TNF receptor 1 (TNFR1) or TNFR2 in HS5 cells had no effect. However, knockdown of R1 in KG1a cells prevented TNF-α–induced apoptosis, while apoptosis was still induced by TNF-α–related apoptosis-inducing ligand. Primary CD34+ cells from MDS marrow, when cocultured with HS5 and TNF-α, also underwent apoptosis. In contrast, no apoptosis was observed in CD34+ cells from the marrow of healthy donors. These data indicate that stroma may convey not only protective effects on hematopoietic cells, but, dependent upon the milieu, may also facilitate apoptosis.
Capture and transfer of HIV-1 particles by mature dendritic cells converges with the exosome-dissemination pathway
Authors: Izquierdo-Useros Nuria , Naranjo-Gómez Mar , Archer Jacob , Hatch Steven C. , Erkizia Itziar , Blanco Julià , Borràs Francesc E. , Puertas Maria Carmen , Connor John H. , Fernández-Figueras Maria Teresa , Moore Landon , Clotet Bonaventura , Gummuluru Suryaram , Martinez-Picado Javier 
Published: October 2008

AbstractExosomes are secreted cellular vesicles that can be internalized by dendritic cells (DCs), contributing to antigen-specific naive CD4+ T-cell activation. Here, we demonstrate that human immunodeficiency virus type 1 (HIV-1) can exploit this exosome antigen-dissemination pathway intrinsic to mature DCs (mDCs) for mediating trans-infection of T lymphocytes. Capture of HIV-1, HIV-1 Gag-enhanced green fluorescent protein (eGFP) viral-like particles (VLPs), and exosomes by DCs was up-regulated upon maturation, resulting in localization within a CD81+ compartment. Uptake of VLPs or exosomes could be inhibited by a challenge with either particle, suggesting that the expression of common determinant(s) on VLP or exosome surface is necessary for internalization by mDCs. Capture by mDCs was insensitive to proteolysis but blocked when virus, VLPs, or exosomes were produced from cells treated with sphingolipid biosynthesis inhibitors that modulate the lipid composition of the budding particles. Finally, VLPs and exosomes captured by mDCs were transmitted to T lymphocytes in an envelope glycoprotein-independent manner, underscoring a new potential viral dissemination pathway.