bluuebunny/crossref_metadata_2025_split huggingface dataset:
Flavor and oxidative stability of hydrogenated and unhydrogenated soybean oil: Effect of tertiary butyl hydroquinone
Authors: Mounts T. L. , Warner K. , List G. R. 
Published: May 2008

AbstractThe efficacy of tertiary butyl hydroquinone (TBHQ) treatment for enhancement of the storage stability of soybean oil has been studied by flavor evaluation and chemical analysis. Soybean oils (I) unhydrogenated (IV=137.7; % linolenate=8.3), (II) hydrogenated with nickel catalyst (IV=109.1; % linolenate=3.3), and (III) hydrogenated with copper‐chromium catalyst (IV=112.8, % linolenate=0.4) were each deodorized. In the cooling stage of the deodorizer, each oil was treated with citric acid plus TBHQ. These freshly deodorized oils were compared to separate batches of each oil treated with citric acid alone or with citric acid plus butylated hydroxyanisole and butylated hydroxytoluene. An analytical taste panel performed sensory evaluations by a paired sample test using an intensity rating scale system. The oils were also evaluated after being subjected to accelerated storage tests (4 days and 8 days at 60 C) and a fluorescent light exposure test (4 hr, ambient temperature). Peroxide development during storage was beneficially reduced in oils treated with TBHQ. The flavor stability of the three oils was not enhanced by treatment with TBHQ under any test conditions.
Nitrogen‐stable isotopic signatures of basal food items, primary consumers and omnivores in rivers with different levels of human impact
Authors: Kohzu Ayato , Tayasu Ichiro , Yoshimizu Chikage , Maruyama Atsushi , Kohmatsu Yukihiro , Hyodo Fujio , Onoda Yukio , Igeta Akitake , Matsui Kiyoshi , Nakano Takanori , Wada Eitaro , Nagata Toshi , Takemon Yasuhiro 
Published: May 2008

AbstractWe examined how nitrogen‐stable isotopic signatures of food web components (basal resources, primary and lower consumers, and omnivores) in rivers change with increasing levels of human population density (HPD) in their watersheds. Samples were collected from 22 rivers flowing in the Lake Biwa basin, Japan. Among three potential resources at the base of food webs (epilithon, benthic and suspended particulate organic matter), the mean isotopic values (δ15N) of the epilithon (4.5–7.8%) were consistently higher than those of other items (1.9–4.2%) and displayed the most pronounced elevation (by 3.3%) with increasing HPD. The mean δ15N values of the individual taxa of lower consumers (bivalve, snail and caddisfly) tended to increase with increasing HPD, although the pattern and the extent of the elevation were highly variable among the taxa. These results suggest a taxon‐specific feature in the N source (or sources) of lower consumers. Our data suggested that human activities (e.g. nutrient loading) potentially induce changes in the N baselines of river food webs. The major N source of bivalves appeared to be shifted from suspended particulate organic matter to other items with increasing HPD. Trophic levels of goby fish (Rhinogobius sp. OR) and shrimp (Palaemon paucidens), being estimated to be at 2.4–3.8 and 2.1–3.4, respectively, did not differ significantly among rivers with different HPD levels.
Cell cycle dependent role of HDAC1 for proliferation control through modulating ribosomal DNA transcription
Authors: Meraner Joachim , Lechner Markus , Schwarze Florian , Gander Roland , Jesacher Florian , Loidl Peter 
Published: May 2008

AbstractRibosome biogenesis and ribosomal DNA transcription are closely correlated with the growth and proliferation of cells, with these processes being under tight epigenetic control. We have investigated the effect of ectopically expressed murine HDAC1 in reporter assays, on ribosomal DNA transcription, cell cycle progression and proliferation in transfected mammalian cells. Ectopically expressed mHDAC1 represses transcription in ribosomal reporter assays driven by ribosomal promoter elements in NIH3T3 cells as well as Cos‐7 cells. Following stable transfection of NIH3T3 cells, flag‐tagged HDAC1 is assembled into functional, enzymatically active HDAC‐complexes that display correct nuclear localization. Induction of flag‐HDAC1 expression in NIH3T3 cells caused a cell‐cycle phase specific reduction in the initiation of endogenous rDNA transcription, reflected in a reduction of nascent rRNA as well as a marked depression of proliferation due to prolongation of G2‐phase. This was substantiated by FACS analysis and cyclin B1 expression analysis. However, prolongation of the G2‐phase in HDAC1‐overexpressing cells finally led to overcompensation and thus to an increase in total ribosomal RNA. The transient downregulation of rRNA synthesis after induction of HDAC1 overexpression led to a prolongation of G2‐phase. These observations were most likely a consequence of HDAC1‐mediated deacetylation of upstream binding factor (UBF).
Restricting coancestry and inbreeding at a specific position on the genome by using optimized selection
Authors: ROUGHSEDGE T. , PONG-WONG R. , WOOLLIAMS J.A. , VILLANUEVA B. 
Published: May 2008

SummaryOver recent years, selection methodologies have been developed to allow the maximization of genetic gain whilst constraining the rate of inbreeding. The desired rate of inbreeding is achieved by constraining the group coancestry using the numerator relationship matrix computed from pedigree. It is shown that when the method is applied to mixed inheritance models, where a QTL is segregating together with polygenes, the rate of inbreeding achieved in the region around a QTL is greater than the desired level. The constraint on group coancestry at specific positions around the QTL is achieved by using a relationship matrix computed from pedigree and genetic markers. However, the rate of inbreeding realized at the position of constraint is lower than that expected given the assumed relationship between group coancestry and the subsequent rate of inbreeding. The use of markers in the calculation of the relationship matrix allows the selection of candidates with very low or zero relationships because they are homozygous for alternative alleles, which results in a heterozygosity amongst their offspring higher than would be expected given their allele frequencies. A generation of random selection restored the expected relationship between group coancestry and inbreeding.
Influence of environmental changes in the north-western Atlantic Ocean on a parasite, Echinorhynchus gadi (Acanthocephala) of Atlantic cod (Gadus morhua) occurring off coastal Labrador, Canada
Authors: Khan R.A. 
Published: May 2008

AbstractA study was conducted to determine the influence of environmental change on an endoparasite, Echinorhynchus gadi (Acanthocephala) of Atlantic cod (Gadus morhua) over a 30-year period off the coast of Labrador in the north-western Atlantic, North Atlantic Fisheries Organization subareas 2J–3K. Cod, once an abundant fish species that had been commercially exploited for many decades, declined precipitously during the mid-1980s onwards. This decline was attributed to climatic changes that affected the entire food chain from zooplankton to fish, sea birds and marine mammals. A monitoring programme was introduced, sampling cod by otter trawling using research vessels. The fish, after capture, were frozen at − 20°C, subsequently thawed and the digestive tract removed and examined for the parasite in 2006. Data from samples taken in 1976, 1980–81, 1986, 1990, 2000 and 2003 were compared statistically with those collected in 2006. The results indicate a decline in the prevalence and mean abundance of E. gadi in 1986 with a minimum in 2000 but increasing gradually in 2003 and 2006. These changes were coincident initially with a decline of oceanic temperature and the entire food web, including capelin (Mallotus villosus), a preferred prey of cod and primary source of E. gadi. The increase in prevalence and mean abundance of the parasite in 2006 were associated with an increase of oceanic temperature and the return of small schools of capelin to offshore areas. Cod older than 4 years harboured a greater abundance of E. gadi than younger fish, while no difference was observed between the sexes. The results suggest that the abundance of E. gadi can be useful as a bioindicator of environmental changes in the north-western Atlantic.
Benefit from the minimally invasive sinus technique
Authors: Salama N , Oakley R J , Skilbeck C J , Choudhury N , Jacob A 
Published: May 2008

AbstractIntroduction:Sinus drainage is impeded by the transition spaces that the anterior paranasal sinuses drain into, not the ostia themselves. Addressing the transition spaces and leaving the ostia intact, using the minimally invasive sinus technique, should reverse chronic rhinosinusitis.Aim:To assess patient benefit following use of the minimally invasive sinus technique for chronic rhinosinusitis.Method:One hundred and forty-three consecutive patients underwent the minimally invasive sinus technique for chronic rhinosinusitis. Symptoms (i.e. blocked nose, poor sense of smell, rhinorrhoea, post-nasal drip, facial pain and sneezing) were recorded using a visual analogue scale, pre-operatively and at six and 12 weeks post-operatively. Patients were also surveyed using the Glasgow benefit inventory, one and three years post-operatively.Results:We found a significant reduction in all nasal symptom scores at six and 12 weeks post-operatively, and increased total quality of life scores at one and three years post-operatively (25.2 and 14.8, respectively).Conclusion:The patient benefits of treatment with the minimally invasive sinus technique compare with the published patient benefits for functional endoscopic sinus surgery.
Defending the independence constraint: a reply to Snider
Authors: SILVER DAVID 
Published: May 2008

AbstractIn an earlier paper I argued that Alvin Plantinga's defence of pure experiential theism (a theism epistemically based on religious experience) against the evidential problem of evil is inappropriately circular. Eric Snider rejects my argument claiming first that I do not get Plantinga's thought right. Second, he rejects a key principle my argument relies on, viz. the ‘independence constraint on neutralizers’. Finally, he offers an alternative to the independence constraint which allows the pure experiential theist to deal successfully with the evidential problem of evil. In this paper I argue that: (a) I have correctly characterized Plantinga's argument; and (b) that Snider's proposed counter-example to the independence constraint fails. Finally, I argue (c) that Snider's proposed alternative to the independence constraint is not a plausible epistemic principle.
Anti-naturalism and proper function
Authors: WUNDER TYLER 
Published: May 2008

AbstractThe penultimate chapter of Alvin Plantinga's Warrant and Proper Function attacks metaphysical naturalism through an argument which concludes that only a supernaturalistic worldview can accommodate the indispensable concept of proper function. I make the case that this argument, which I dub ‘the argument from proper function’, suffers from two major flaws. First, it underestimates the naturalist's ability to ground natural proper function ascriptions in the concept of health. Second, it relies upon an overly stringent standard for successful conceptual analysis; ironically, the naturalist can undercut the argument by adopting Plantinga's own recommended model for analysing concepts.
Generic open theism and some varieties thereof
Authors: RHODA ALAN R. 
Published: May 2008

AbstractThe goal of this paper is to facilitate ongoing dialogue between open and non-open theists. First, I try to make precise what open theism is by distinguishing the core commitments of the position from other secondary and optional commitments. The result is a characterization of ‘generic open theism’, the minimal set of commitments that any open theist,quaopen theist, must affirm. Second, within the framework of generic open theism, I distinguish three important variants and discuss challenges distinctive to each. The significance of this approach is that it helps avoid conflating arguments bearing on specific versions of open theism with arguments pertaining to open theismsimpliciter.
Observational aspects of prominence oscillations
Authors: Engvold Oddbjørn 
Published: May 2008

AbstractSeismology has become a powerful tool in studies of the magnetic structure of solar prominences and filaments. Reversely, analytical and numerical models are guided by available information about the spatial and thermodynamical structure of these enigmatic structures. The present invited paper reviews recent observational results on oscillations and waves as well as details about small-scale structures and dynamics of prominences and filaments.
Multi-wavelength investigation of energy release and transport in the 16 August 2004 flare
Authors: Kashapova L. K. , Zharkova V. V. , Grechnev V. V. , Ipson S. S. 
Published: May 2008

AbstractThe current contribution investigates the solar flare of 16th August 2004 with the multi-wavelength observations with high temporal resolution from RHESSI, Large Solar Vacuum Telescope (LSVT), Hiraiso Solar observatory, Nobeyama Radioheliograph (NoRH, 17 and 34 GHz) and Siberian Solar Radio Telescope (SSRT, 5.7 GHz), TRACE. The main flare was preceded by a pre-flare event with a very short energy release time. The observations of the main flare reveal a close temporal correlation between the Hα intensity observed with LSVT and those in hard and soft X-ray emissions observed with RHESSI, and in microwave fluxes observed with NoRH and SSRT. This close temporal correlation can be only associated with high-energy particles. The role of energetic particles in energy transport and non-thermal excitation and ionisation on Hα emission during the pre-flare and pre-flare event is investigated with full non-LTE approach and possible agents and scenarios of energy transport are discussed.
Fundamental physical processes in coronae: Waves, turbulence, reconnection, and particle acceleration
Authors: Aschwanden Markus J. 
Published: May 2008

AbstractOur understanding of fundamental processes in the solar corona has been greatly progressed based on the space observations of SMM, Yohkoh, Compton GRO, SOHO, TRACE, RHESSI, and STEREO. We observe now acoustic waves, MHD oscillations, turbulence-related line broadening, magnetic configurations related to reconnection processes, and radiation from high-energy particles on a routine basis. We review a number of key observations in EUV, soft X-rays, and hard X-rays that innovated our physical understanding of the solar corona, in terms of hydrodynamics, MHD, plasma heating, and particle acceleration processes.
Turbulent heating of coronal active regions
Authors: Gómez Daniel O. , Dmitruk Pablo 
Published: May 2008

AbstractMagnetohydrodynamic turbulence has been proposed as a mechanism for the heating of coronal active regions, and has therefore been actively investigated in recent years. According to this scenario, a turbulent regime is driven by footpoint motions. The energy being pumped this way into active region loops, is efficiently transferred to small scales due to a direct energy cascade. The ensuing generation of fine scale structures, which is a natural outcome of turbulent regimes, helps to enhance the dissipation of either waves or DC currents.We present an updated overview of recent results on turbulent coronal heating. To illustrate this theoretical scenario, we simulate the internal dynamics of a coronal loop within the reduced MHD approximation. The application of a stationary velocity field at the photospheric boundary leads to a turbulent stationary regime after several photospheric turnover times. This regime is characterized by a broadband power spectrum and energy dissipation rate levels compatible with the heating requirements of active region loops. Also, the energy dissipation rate displays a complex superposition of impulsive events, which we associate to the so-called nanoflares. A statistical analysis yields a power law distribution as a function of their energies, which is consistent with those obtained from observations. We also study the distributions of peak dissipation rate and duration of these events.
Solar feature tracking in both spatial and temporal domains
Authors: Jess D. B. , Mathioudakis M. , Erdélyi R. , Verth G. , McAteer R. T. J. , Keenan F. P. 
Published: May 2008

AbstractA new method for automated coronal loop tracking, in both spatial and temporal domains, is presented. The reliability of this technique was tested with TRACE 171 Å observations. The application of this technique to a flare-induced kink-mode oscillation, revealed a 3500 km spatial periodicity which occur along the loop edge. We establish a reduction in oscillatory power, for these spatial periodicities, of 45% over a 322 s interval. We relate the reduction in oscillatory power to the physical damping of these loop-top oscillations.
Thermally damped linear compressional waves in a 2D solar coronal model
Authors: Marcu A. , Ballai I. , Orza B. 
Published: May 2008

AbstractThe high resolution observations (TRACE and SOHO) of waves in coronal structures have revealed a rapid damping of modes, sometimes their damping length being of the same order as their wavelength. The rapid damping of modes in coronal loops permits us to derive values for magnetic field and transport coefficients. In this contribution we study the damping of linear compressional waves considering a two-dimensional propagation in gravitationally stratified plasma in the presence of thermal conduction. By considering this 2D model, we show that the presence of an additional transversal motion has an important effect on the damping of the waves. This theoretical model allows as to conclude that the main effects influencing the damping of the waves are the degree of the transversal structuring and temperature.
Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal
Authors: Wilmes Paul , Andersson Anders F , Lefsrud Mark G , Wexler Margaret , Shah Manesh , Zhang Bing , Hettich Robert L , Bond Philip L , VerBerkmoes Nathan C , Banfield Jillian F 
Published: May 2008

AbstractEnhanced biological phosphorus removal (EBPR) selects for polyphosphate accumulating microorganisms to achieve phosphate removal from wastewater. We used high-resolution community proteomics to identify key metabolic pathways in ‘Candidatus Accumulibacter phosphatis’ (A. phosphatis)-mediated EBPR and to evaluate the contributions of co-existing strains within the dominant population. Overall, 702 proteins from the A. phosphatis population were identified. Results highlight the importance of denitrification, fatty acid cycling and the glyoxylate bypass in EBPR. Strong similarity in protein profiles under anaerobic and aerobic conditions was uncovered (only 3% of A. phosphatis-associated proteins exhibited statistically significant abundance differences). By comprehensive genome-wide alignment of 13 930 orthologous proteins, we uncovered substantial differences in protein abundance for enzyme variants involved in both core-metabolism and EBPR-specific pathways among the A. phosphatis population. These findings suggest an essential role for genetic diversity in maintaining the stable performance of EBPR systems and, hence, demonstrate the power of integrated cultivation-independent genomics and proteomics for the analysis of complex biotechnological systems.
Waist Circumference Cutoff Points in School‐aged Chinese Han and Uygur Children
Authors: Yan Weili , Yao Hua , Dai Jianghong , Cui Jun , Chen Yan , Yang Xiaoyan , Harshfield Gregory A. , Wang Xiaoling 
Published: May 2008

Objective: To examine the distribution of age‐ and gender‐specific waist circumference (WC) and to identify optimal cutoffs for predicting cardiovascular (CV) risk factors in Chinese Han and Uygur children.Methods and Procedures: In total 4,224 Han and Uygur children aged 7–18 were randomly selected from schools in Urumqi city, China. WC, height, and weight were accurately measured in all subjects. Blood pressure, fasting lipids, glucose, and insulin were determined in 258 overweight/obese children and 370 age‐, gender‐, and ethnicity‐matched normal‐weight controls selected from the same study sample. LMS (lambda‐mu‐sigma) method was used to construct WC centile curves. Optimal WC cutoffs were determined by comparing the performance of five sets of WC cutoffs in predicting CV risk factors.Results: Han boys and girls had higher WC at all percentiles and ages except for girls over the age of 16. Uygur girls also showed a greater increase in WC corresponding with age (2.1 cm/year vs. 1.6 cm/year for the median) than Han girls. Compared with the other four sets of cutoffs, the 85th WC percentile showed the best combination of sensitivity (81.0%) and specificity (71.4%). The two sets of WC cutoffs constructed by allowing centile curves passing through the adult cutoffs for central adiposity using the fitted LMS curves provided poor sensitivities in predicting the presence of cluster of CV risk factors.Discussion: The growth pattern of WC varies with gender and ethnicity. The 85th percentile of WC is an appropriate cutoff for Chinese Han and Uygur children in the prediction of CV risks.
Alkaline Phosphatase Treatment of Phosphopeptides: In-Solution Dephosphorylation after MALDI-MS Analysis
Authors: Steen Hanno , Stensballe Allan , Jensen Ole N. 
Published: May 2008

INTRODUCTIONThe use of the enzyme alkaline phosphatase allows identification of phosphopeptides in a mixture of predominantly nonphosphopeptides. Using a MALDI-MS instrument, the masses of peptides are acquired both before and after alkaline phosphatase treatment, which removes phospho-moieties from serine, threonine, and/or tyrosine. (Any peptide whose mass decreases by 80 Da, or a multiple thereof, is a phosphopeptide.) An advantage of using MALDI-MS for these experiments is that the peptide ions produced tend to be singly charged rather than multiply charged (as with ESI), thus making the interpretation easier. This protocol describes a method for in-solution dephosphorylation after MALDI-MS analysis.
Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): II. Second-Strand Synthesis and In Vitro Transcription
Authors: Liu Chih Long , Bernstein Bradley E. , Schreiber Stuart L. 
Published: May 2008

INTRODUCTIONT7-based linear amplification of DNA (TLAD) uses a linear amplification approach based on in vitro transcription (IVT) of template DNA by RNA polymerase from the T7 phage. TLAD was designed primarily for use with the ChIP-chip method (whereby DNA recovered from chromatin immunoprecipitation [ChIP] of cell lysate is used for subsequent analysis on DNA microarrays) and requires nanogram quantities of dsDNA to generate microgram amounts of amplified RNA. Briefly, the strategy is to add a 3′ conserved end to the template dsDNA, using terminal deoxynucleotidyl transferase (TdT) tailing, which permits the addition of a T7 promoter sequence in the subsequent second-strand synthesis step, described here. At this stage, the strand-displacement activity of the Klenow fragment polymerase separates the two strands of the template DNA, after which the enzyme performs fill-in 5′ → 3′ polymerization. Its 3′ → 5′ exonuclease activity may also remove the 3′ overhanging poly(dT) tails, although the efficiency of this activity will vary based on the length of the poly(dT) tail. IVT can then use this newly appended T7 promoter. Because the T7-based IVT proceeds as an isothermal reaction, it linearly amplifies the template DNA, producing antisense RNA (aRNA) (i.e., each strand of RNA produced is antisense to the original template strand). Since both strands are amplified, this distinction is usually not important and is affected only by the location of the T7 promoter and poly(A) tract on the aRNA.