bluuebunny/crossref_metadata_2025_split huggingface dataset:
Genetic predisposition for femoral neck stress fractures in military conscripts
Authors: Korvala Johanna , Hartikka Heini , Pihlajamäki Harri , Solovieva Svetlana , Ruohola Juha-Petri , Sahi Timo , Barral Sandra , Ott Jürg , Ala-Kokko Leena , Männikkö Minna 
Published: November 2010

Abstract

Background
Stress fractures are a significant problem among athletes and soldiers and may result in devastating complications or even permanent handicap. Genetic factors may increase the risk, but no major susceptibility genes have been identified. The purpose of this study was to search for possible genetic factors predisposing military conscripts to femoral neck stress fractures.

Results
Eight genes involved in bone metabolism or pathology (COL1A1, COL1A2, OPG, ESR1, VDR, CTR, LRP5, IL-6) were examined in 72 military conscripts with a femoral neck stress fracture and 120 controls. The risk of femoral neck stress fracture was significantly higher in subjects with low weight and body mass index (BMI). An interaction between the CTR (rs1801197) minor allele C and the VDR C-A haplotype was observed, and subjects lacking the C allele in CTR and/or the C-A haplotype in VDR had a 3-fold higher risk of stress fracture than subjects carrying both (OR = 3.22, 95% CI 1.38-7.49, p = 0.007). In addition, the LRP5 haplotype A-G-G-C alone and in combination with the VDR haplotype C-A was associated with stress fractures through reduced body weight and BMI.

Conclusions
Our findings suggest that genetic factors play a role in the development of stress fractures in individuals subjected to heavy exercise and mechanical loading. The present results can be applied to the design of future studies that will further elucidate the genetics of stress fractures.
Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa
Authors: Xu Jinsong , Qian Xiaoju , Wang Xiaofeng , Li Ruiyuan , Cheng Xiaomao , Yang Yuan , Fu Jie , Zhang Shunchang , King Graham J , Wu Jiangsheng , Liu Kede 
Published: November 2010

AbstractBackgroundThe MultinationalBrassica rapaGenome Sequencing Project (BrGSP) has developed valuable genomic resources, including BAC libraries, BAC-end sequences, genetic and physical maps, and seed BAC sequences forBrassica rapa. An integrated linkage map between the amphidiploidB. napusand diploidB. rapawill facilitate the rapid transfer of these valuable resources fromB. rapatoB. napus(Oilseed rape, Canola).ResultsIn this study, we identified over 23,000 simple sequence repeats (SSRs) from 536 sequenced BACs. 890 SSR markers (designated as BrGMS) were developed and used for the construction of an integrated linkage map for the A genome inB. rapaandB. napus. Two hundred and nineteen BrGMS markers were integrated to an existingB. napuslinkage map (BnaNZDH). Among these mapped BrGMS markers, 168 were only distributed on the A genome linkage groups (LGs), 18 distrubuted both on the A and C genome LGs, and 33 only distributed on the C genome LGs. Most of the A genome LGs inB. napuswere collinear with the homoeologous LGs inB. rapa, although minor inversions or rearrangements occurred on A2 and A9. The mapping of these BAC-specific SSR markers enabled assignment of 161 sequencedB. rapaBACs, as well as the associated BAC contigs to the A genome LGs ofB. napus.ConclusionThe genetic mapping of SSR markers derived from sequenced BACs inB. rapaenabled direct links to be established between theB. napuslinkage map and aB. rapaphysical map, and thus the assignment ofB. rapaBACs and the associated BAC contigs to theB. napuslinkage map. This integrated genetic linkage map will facilitate exploitation of theB. rapaannotated genomic resources for gene tagging and map-based cloning inB. napus, and for comparative analysis of the A genome withinBrassicaspecies.
Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera
Authors: Cornman R Scott , Schatz Michael C , Johnston J Spencer , Chen Yan-Ping , Pettis Jeff , Hunt Greg , Bourgeois Lanie , Elsik Chris , Anderson Denis , Grozinger Christina M , Evans Jay D 
Published: November 2010

Abstract
Background
The ectoparasitic mite Varroa destructor has emerged as the primary pest of domestic honey bees (Apis mellifera). Here we present an initial survey of the V. destructor genome carried out to advance our understanding of Varroa biology and to identify new avenues for mite control. This sequence survey provides immediate resources for molecular and population-genetic analyses of Varroa-Apis interactions and defines the challenges ahead for a comprehensive Varroa genome project.

Results
The genome size was estimated by flow cytometry to be 565 Mbp, larger than most sequenced insects but modest relative to some other Acari. Genomic DNA pooled from ~1,000 mites was sequenced to 4.3× coverage with 454 pyrosequencing. The 2.4 Gbp of sequencing reads were assembled into 184,094 contigs with an N50 of 2,262 bp, totaling 294 Mbp of sequence after filtering. Genic sequences with homology to other eukaryotic genomes were identified on 13,031 of these contigs, totaling 31.3 Mbp. Alignment of protein sequence blocks conserved among V. destructor and four other arthropod genomes indicated a higher level of sequence divergence within this mite lineage relative to the tick Ixodes scapularis. A number of microbes potentially associated with V. destructor were identified in the sequence survey, including ~300 Kbp of sequence deriving from one or more bacterial species of the Actinomycetales. The presence of this bacterium was confirmed in individual mites by PCR assay, but varied significantly by age and sex of mites. Fragments of a novel virus related to the Baculoviridae were also identified in the survey. The rate of single nucleotide polymorphisms (SNPs) in the pooled mites was estimated to be 6.2 × 10-5per bp, a low rate consistent with the historical demography and life history of the species.

Conclusions
This survey has provided general tools for the research community and novel directions for investigating the biology and control of Varroa mites. Ongoing development of Varroa genomic resources will be a boon for comparative genomics of under-represented arthropods, and will further enhance the honey bee and its associated pathogens as a model system for studying host-pathogen interactions.
The Vitis vinifera sugar transporter gene family: phylogenetic overview and macroarray expression profiling
Authors: Afoufa-Bastien Damien , Medici Anna , Jeauffre Julien , Coutos-Thévenot Pierre , Lemoine Rémi , Atanassova Rossitza , Laloi Maryse 
Published: November 2010

Abstract

Background
In higher plants, sugars are not only nutrients but also important signal molecules. They are distributed through the plant via sugar transporters, which are involved not only in sugar long-distance transport via the loading and the unloading of the conducting complex, but also in sugar allocation into source and sink cells. The availability of the recently released grapevine genome sequence offers the opportunity to identify sucrose and monosaccharide transporter gene families in a woody species and to compare them with those of the herbaceous Arabidopsis thaliana using a phylogenetic analysis.

Results
In grapevine, one of the most economically important fruit crop in the world, it appeared that sucrose and monosaccharide transporter genes are present in 4 and 59 loci, respectively and that the monosaccharide transporter family can be divided into 7 subfamilies. Phylogenetic analysis of protein sequences has indicated that orthologs exist between Vitis and Arabidospis. A search for cis-regulatory elements in the promoter sequences of the most characterized transporter gene families (sucrose, hexoses and polyols transporters), has revealed that some of them might probably be regulated by sugars. To profile several genes simultaneously, we created a macroarray bearing cDNA fragments specific to 20 sugar transporter genes. This macroarray analysis has revealed that two hexose (VvHT1, VvHT3), one polyol (VvPMT5) and one sucrose (VvSUC27) transporter genes, are highly expressed in most vegetative organs. The expression of one hexose transporter (VvHT2) and two tonoplastic monosaccharide transporter (VvTMT1, VvTMT2) genes are regulated during berry development. Finally, three putative hexose transporter genes show a preferential organ specificity being highly expressed in seeds (VvHT3, VvHT5), in roots (VvHT2) or in mature leaves (VvHT5).

Conclusions
This study provides an exhaustive survey of sugar transporter genes in Vitis vinifera and revealed that sugar transporter gene families in this woody plant are strongly comparable to those of herbaceous species. Dedicated macroarrays have provided a Vitis sugar transporter genes expression profiling, which will likely contribute to understand their physiological functions in plant and berry development. The present results might also have a significant impact on our knowledge on plant sugar transporters.
Factors associated with Group A Streptococcus emm type diversification in a large urban setting in Brazil: a cross-sectional study
Authors: Tartof Sara Y , Reis Joice N , Andrade Aurelio N , Ramos Regina T , Reis Mitermayer G , Riley Lee W 
Published: November 2010

Abstract

Background
Group A Streptococcus (GAS) strain diversity varies across different regions of the world, according to low versus high-income countries. These differences may be related to geographic, environmental, socioeconomic, or host-related factors. However, local factors may also affect strain diversity. We compared the emm types of GAS isolates from children with and without sore throat in one large urban setting in Brazil.

Methods
Children 3-15 years of age were consecutively recruited from slum and non-slum pediatric outpatient clinics between April-October, 2008. Throat cultures were performed and data intake forms were completed. GAS isolates were typed by emm sequencing.

Results
From 2194 children, 254 (12%) GAS isolates were obtained. Of 238 GAS isolates that were emm-typed, 61 unique emm types were identified. Simpson's diversity index of the emm types was higher among isolates from slum children [97% (96%-98%)] than those of non-slum children [92% (89%-96%)]. Two emm types (66.0, 12.0) were more frequently isolated from children with sore throat (p < 0.05), and one emm type (27G.0) demonstrated a protective effect.

Conclusions
The emm type diversity from children attending slum clinics resembled the emm diversity of low income countries rather than that of children attending a non-slum clinic in the same city. Local factors, such as crowding, may enhance the frequency of GAS transmission and horizontal gene transfers that contribute to increased strain diversity in the slums. GAS vaccine coverage and control of GAS infections will need to take these local factors and strain differences into consideration.
Identification of differentially expressed genes using an annealing control primer system in stage III serous ovarian carcinoma
Authors: Kim Yun-Sook , Hwan Do Jin , Bae Sumi , Bae Dong-Han , Shick Ahn Woong 
Published: November 2010

Abstract

Background
Most patients with ovarian cancer are diagnosed with advanced stage disease (i.e., stage III-IV), which is associated with a poor prognosis. Differentially expressed genes (DEGs) in stage III serous ovarian carcinoma compared to normal tissue were screened by a new differential display method, the annealing control primer (ACP) system. The potential targets for markers that could be used for diagnosis and prognosis, for stage III serous ovarian cancer, were found by cluster and survival analysis.

Methods
The ACP-based reverse transcriptase polymerase chain reaction (RT PCR) technique was used to identify DEGs in patients with stage III serous ovarian carcinoma. The DEGs identified by the ACP system were confirmed by quantitative real-time PCR. Cluster analysis was performed on the basis of the expression profile produced by quantitative real-time PCR and survival analysis was carried out by the Kaplan-Meier method and Cox proportional hazards multivariate model; the results of gene expression were compared between chemo-resistant and chemo-sensitive groups.

Results
A total of 114 DEGs were identified by the ACP-based RT PCR technique among patients with stage III serous ovarian carcinoma. The DEGs associated with an apoptosis inhibitory process tended to be up-regulated clones while the DEGs associated with immune response tended to be down-regulated clones. Cluster analysis of the gene expression profile obtained by quantitative real-time PCR revealed two contrasting groups of DEGs. That is, a group of genes including: SSBP1, IFI6 DDT, IFI27, C11orf92, NFKBIA, TNXB, NEAT1 and TFG were up-regulated while another group of genes consisting of: LAMB2, XRCC6, MEF2C, RBM5, FOXP1, NUDCP2, LGALS3, TMEM185A, and C1S were down-regulated in most patients. Survival analysis revealed that the up-regulated genes such as DDAH2, RNase K and TCEAL2 might be associated with a poor prognosis. Furthermore, the prognosis of patients with chemo-resistance was predicted to be very poor when genes such as RNase K, FOXP1, LAMB2 and MRVI1 were up-regulated.

Conclusion
The DEGs in patients with stage III serous ovarian cancer were successfully and reliably identified by the ACP-based RT PCR technique. The DEGs identified in this study might help predict the prognosis of patients with stage III serous ovarian cancer as well as suggest targets for the development of new treatment regimens.
Temporomandibular joint disc repositioning using bone anchors: an immediate post surgical evaluation by Magnetic Resonance Imaging
Authors: Zhang ShanYong , Liu XiuMing , Yang XiuJuan , Yang Chi , Chen MinJie , Haddad Majd S , Chen ZhuoZhi 
Published: November 2010

Abstract

Background
Open joint procedures using bone anchors have shown clinical and radiograph good success, but post surgical disc position has not been documented with MRI imaging. We have designed a modified technique of using two bone anchors and 2 sutures to reposition the articular discs. This MRI study evaluates the post surgical success of this technique to reposition and stabilize the TMJ articular discs.

Methods
Consecutive 81 patients with unilateral TMJ internal derangement (ID) (81 TMJs) were treated between December 1, 2003, and December 1, 2006, at the Department of Oral and Maxillofacial Surgery, Ninth Peoples Hospital, Shanghai, Jiao Tong University School of Medicine. All patients were subjected to magnetic resonance imaging before and one to seven days post surgery to determine disc position using the modified bone anchor technique.

Results
Postoperative MRIs (one to seven days) confirm that 77 of 81 joints were identified as excellent results and one joint was considered good for an overall effective rate of 96.3% (78 of 81 joints). Only 3.7% (3 of 81) of the joints were designated as poor results requiring a second open surgery.

Conclusions
This procedure has provided successful repositioning of the articular discs in unilateral TMJ ID at one to seven days post surgery.
Func tional treatment versus plaster for si mple el bow dislocations (FuncSiE): a randomized trial
Authors: de Haan Jeroen , den Hartog Dennis , Tuinebreijer Wim E , Iordens Gijs IT , Breederveld Roelf S , Bronkhorst Maarten WGA , Bruijninckx Milko MM , De Vries Mark R , Dwars Boudewijn J , Eygendaal Denise , Haverlag Robert , Meylaerts Sven AG , Mulder Jan-Willem R , Ponsen Kees J , Roerdink W Herbert , Roukema Gert R , Schipper Inger B , Schouten Michel A , Sintenie Jan Bernard , Sivro Senail , Van den Brand Johan GH , Van der Meulen Hub GWM , Van Thiel Tom PH , Van Vugt Arie B , Verleisdonk Egbert JMM , Vroemen Jos PAM , Waleboer Marco , Willems W Jaap , Polinder Suzanne , Patka Peter , van Lieshout Esther MM , Schep Niels WL 
Published: November 2010

Abstract

Background
Elbow dislocations can be classified as simple or complex. Simple dislocations are characterized by the absence of fractures, while complex dislocations are associated with fractures. After reduction of a simple dislocation, treatment options include immobilization in a static plaster for different periods of time or so-called functional treatment. Functional treatment is characterized by early active motion within the limits of pain with or without the use of a sling or hinged brace. Theoretically, functional treatment should prevent stiffness without introducing increased joint instability. The primary aim of this randomized controlled trial is to compare early functional treatment versus plaster immobilization following simple dislocations of the elbow.

Methods/Design
The design of the study will be a multicenter randomized controlled trial of 100 patients who have sustained a simple elbow dislocation. After reduction of the dislocation, patients are randomized between a pressure bandage for 5-7 days and early functional treatment or a plaster in 90 degrees flexion, neutral position for pro-supination for a period of three weeks. In the functional group, treatment is started with early active motion within the limits of pain. Function, pain, and radiographic recovery will be evaluated at regular intervals over the subsequent 12 months. The primary outcome measure is the Quick Disabilities of the Arm, Shoulder, and Hand score. The secondary outcome measures are the Mayo Elbow Performance Index, Oxford elbow score, pain level at both sides, range of motion of the elbow joint at both sides, rate of secondary interventions and complication rates in both groups (secondary dislocation, instability, relaxation), health-related quality of life (Short-Form 36 and EuroQol-5D), radiographic appearance of the elbow joint (degenerative changes and heterotopic ossifications), costs, and cost-effectiveness.

Discussion
The successful completion of this trial will provide evidence on the effectiveness of a functional treatment for the management of simple elbow dislocations.

Trial Registration
The trial is registered at the Netherlands Trial Register (NTR2025).
Lack of awareness of erectile dysfunction in many men with risk factors for erectile dysfunction
Authors: Shabsigh Ridwan , Kaufman Joel , Magee Michelle , Creanga Dana , Russell David , Budhwani Meeta 
Published: November 2010

Abstract

Background
Men with erectile dysfunction often have concurrent medical conditions. Conversely, men with these conditions may also have underlying erectile dysfunction. The prevalence of unrecognized erectile dysfunction in men with comorbidities commonly associated with erectile dysfunction was determined in men invited to participate in a double-blind, randomized, placebo-controlled trial of sildenafil citrate.

Methods
Men ≥30 years old presenting with ≥1 erectile dysfunction risk factor (controlled hypertension, hypercholesterolemia, smoking, metabolic syndrome, stable coronary artery disease, diabetes, depression, lower urinary tract symptoms, obesity [body mass index ≥30 kg/m2] or waist circumference ≥40 inches), and not previously diagnosed with erectile dysfunction were evaluated. The screening question, "Do you have erectile dysfunction?," with responses of "no," "yes," and "unsure," and the Erectile Function domain of the International Index of Erectile Function (IIEF-EF) were administered.

Results
Of 1084 men screened, 1053 answered the screening question and also had IIEF-EF scores. IIEF-EF scores indicating erectile dysfunction occurred in 71% (744/1053), of whom 54% (399/744) had moderate or severe erectile dysfunction. Of 139 answering "yes," 526 answering "unsure," and 388 answering "no," 96%, 90%, and 36%, respectively, had some degree of erectile dysfunction. The mean±SD (range) number of risk factors was 2.9 ± 1.7 (3-8) in the "yes" group, 3.2 ± 1.7 (3-9) in the "unsure" group, and 2.6 ± 1.5 (2-8) in the "no" group.

Conclusion
Although awareness of having erectile dysfunction was low, most men with risk factors had IIEF-EF scores indicating erectile dysfunction. Erectile dysfunction should be suspected and assessed in men with risk factors, regardless of their apparent level of awareness of erectile dysfunction.

Trial registration
ClinicalTrials.gov Identifier NCT00343200.
The effects of arm swing on human gait stability
Authors: Bruijn Sjoerd M. , Meijer Onno G. , Beek Peter J. , van Dieën Jaap H. 
Published: November 2010

SUMMARY
Arm swing during human gait has been shown to reduce both angular momentum about the vertical and energy expenditure, and has been hypothesized to enhance gait stability. To examine this hypothesis, we studied the effect of arm swing on the local and global stability of steady-state gait, as well as the ability to perform adequate recovery actions following a perturbation. Trunk kinematics of 11 male subjects was measured in treadmill walking with normal and with restricted arm swing. In half of the trials, gait was perturbed by a position-controlled forward pull to the trunk. We constructed state spaces using data recorded from the unperturbed steady-state walking trials, and quantified local gait stability by calculating maximum Lyapunov exponents. In addition, we analyzed perturbation forces, the distance from the unperturbed gait pattern, and the return toward the normal gait pattern following an external perturbation. Walking without arm swing led to a non-significantly lower Lyapunov exponent (P=0.06), significantly higher perturbation forces (P&lt;0.05), and significantly slower movements away from the attractor (P&lt;0.01). These results suggest that gait without arm swing is characterized by similar local stability to gait with arm swing and a higher perturbation resistance. However, return towards the normal gait pattern was significantly slower (P&lt;0.05) when walking with restricted arms, suggesting that the arms play an important role in the recovery from a perturbation. Collectively, the results suggest that arm swing as such does not enhance gait stability, but rather that recovery movements of the arms contribute to the overall stability of human gait.
Plant cues for aphid navigation in vascular tissues
Authors: Hewer Angela , Will Torsten , van Bel Aart J. E. 
Published: November 2010

SUMMARY
The ability of aphids to detect and find sieve tubes suggests that aphids receive cues for sieve-tube recognition by taking samples. Specific natural conditions such as pH value, sugar species and concentration, viscosity, and oxygen pressure may enable sieve-tube detection. We tested the preference of Megoura viciae and Myzus persicae for potential plant-borne orientation parameters in artificial choice-chamber systems. Both species preferred sucrose (in comparison with fructose, glucose, raffinose or sorbitol) at concentrations of 15–22.5% (over a tested range of 0–22.5%) and at approximately pH 7 (over a tested range of pH 5–8). This preference matches the composition of the sieve-tube sap of their host plants. Likewise, Rhopalosiphum padi (normally found on barley plants with sucrose in the phloem sap) and Macrosiphum euphorbiae (normally found on pumpkin plants with raffinose-family oligosaccharides in the phloem sap) showed a significant preference for sucrose. In the absence of sucrose, however, M. euphorbiae strongly preferred raffinose. No clear preference for any carbohydrate was observed for Macrosiphum rosae and Aphis pomi (both normally found on plants with various amounts of sorbitol in the phloem sap). Electrical penetration graph (EPG) measurements of M. persicae feeding on artificial diets confirmed that sieve tubes are recognized solely by a combination of carbohydrate abundance and a neutral to slightly alkaline pH.