bluuebunny/crossref_metadata_2025_split huggingface dataset:
Theoretical studies on the structure and protonation of Cu(II) complexes of a series of tripodal aliphatic tetraamines: Good correlations with the experimental data
Authors: Salehzadeh Sadegh , Bayat Mehdi 
Published: March 2010

AbstractDFT(B3LYP) studies on first protonation step of a series of Cu(II) complexes of some tripodal tetraamines with general formula N[(CH2)nNH2][(CH2)mNH2][(CH2)pNH2] (n = m = p = 2, tren; n = 3, m = p = 2, pee; n = m = 3, p = 2, ppe; n = m = 3, tpt; n = 2, m = 3, p = 4, epb; and n = m = 3, p = 4; ppb) are reported. First, the gas‐phase proton macroaffinity of all latter complexes was calculated with considering following simple reaction: [Cu(L)]2+(g) + H+(g) → [Cu(HL)]3+(g). The results showed that there is a good correlation between the calculated proton macroaffinities of all complexes with their stability constants in solution. Then, we tried to determine the possible reliable structures for microspecies involved in protonation process of above complexes. The results showed that, similar to the solid state, the [Cu(L)(H2O)]2+ and [Cu(HL)(H2O)2]3+ are most stable species for latter complexes and their protonated form, respectively, at gas phase. We found that there are acceptable correlations between the formation constants of above complexes with both the −$\overline {\Delta E}$ and −$\overline {\Delta G}$ of following reaction: [Cu(L)(H2O)]2+(g) + H+(g) + H2O(g) → [Cu(HL)(H2O)2]3+(g). The −$\overline {\Delta E}$ of the latter reaction can be defined as a theoretically solvent–proton macroaffinity of reactant complexes because they have gained one proton and one molecule of the solvent. The unknown formation constant of [Cu(epb)]2+ complex was also predicted from the observed correlations. In addition, the first proton affinity of all complexes was studied in solution using DPCM and CPCM methods. It was shown that there is an acceptable correlation between the solvent–proton affinities of [Cu(L)(H2O)]2+ complexes with formation constants of [Cu(HL)(H2O)2]3+ complexes in solution. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010
Molecular docking studies of selected tricyclic and quinone derivatives on trypanothione reductase of Leishmania infantum
Authors: Venkatesan Santhosh Kannan , Shukla Anil Kumar , Dubey Vikash Kumar 
Published: March 2010

AbstractVisceral leishmaniasis, most lethal form of Leishmaniasis, is caused by Leishmania infantum in the Old world. Current therapeutics for the disease is associated with a risk of high toxicity and development of drug resistant strains. Thiol‐redox metabolism involving trypanothione and trypanothione reductase, key for survival of Leishmania, is a validated target for rational drug design. Recently published structure of trypanothione reductase (TryR) from L. infantum, in oxidized and reduced form along with Sb(III), provides vital clues on active site of the enzyme. In continuation with our attempts to identify potent inhibitors of TryR, we have modeled binding modes of selected tricyclic compounds and quinone derivatives, using AutoDock4. Here, we report a unique binding mode for quinone derivatives and 9‐aminoacridine derivatives, at the FAD binding domain. A conserved hydrogen bonding pattern was observed in all these compounds with residues Thr335, Lys60, His461. With the fact that these residues aid in the orientation of FAD towards the active site forming the core of the FAD binding domain, designing selective and potent compounds that could replace FAD in vivo during the synthesis of Trypanothione reductase can be deployed as an effective strategy in designing new drugs towards Leishmaniasis. We also report the binding of Phenothiazine and 9‐aminoacridine derivatives at the Z site of the protein. The biological significance and possible mode of inhibition by quinone derivatives, which binds to FAD binding domain, along with other compounds are discussed. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010
Comparison of prenatal ultrasound findings and autopsy findings in fetuses terminated after prenatal diagnosis of malformations: An experience of a clinical genetics center
Authors: Phadke Shubha R. , Gupta Ashutosh 
Published: March 2010

AbstractObjective.To compare antenatal diagnosis with post mortem examination findings in the pregnancies terminated after prenatal detection of anomalies and to evaluate the potential benefits of post mortem examination for counseling regarding the risk of recurrence.Methods.This is a retrospective study over a 7‐year period from 2001 to 2007. Pregnancies terminated after prenatal identification of fetal malformation were evaluated by post mortem examination of 91 fetuses.Results.Fetal autopsy provided a definite diagnosis in 72/91 (79.1%) of the cases. Fetal autopsy confirmed the sonographic findings in 89 of 91 cases (97.8%). In 66 (72.5%) cases there was complete concordance between prenatal and autopsy findings, while in 23 cases there was major concordance. There were 49 cases with isolated malformations, 41 cases with multiple (89) malformations, and, in one case, no malformation was found at autopsy. Of the 89 associated malformations, 39 (43.8%) were detected prenatally and 50 (56.2%) were detected on fetal autopsy. The additional malformations detected on autopsy included 38 major and 12 minor malformations Additional findings helped in redefining the diagnosis and the risk of recurrence in 30 of 91 (33%) cases.Conclusion.The present study emphasizes the importance of autopsy in providing accurate etiologic diagnosis necessary for genetic counseling. © 2010 Wiley Periodicals, Inc. J Clin Ultrasound, 2010
Effects of in vivo testosterone manipulation on ovarian morphology, follicular development, and follicle yolk testosterone in the homing pigeon
Authors: Goerlich Vivian C. , Dijkstra Cor , Groothuis Ton G. G. 
Published: March 2010

AbstractTo date, our understanding of the function of testosterone in female reproductive physiology is only marginal although there are indications that testosterone is involved in modulating follicular recruitment, growth, atresia, and ovulation. Studies elevating testosterone in breeding female birds have, in most instances, found detrimental effects, such as delayed clutch initiation or decreased clutch size. In our previous study, testosterone treatment of female homing pigeons delayed clutch initiation without diminishing fecundity. In this study, we explore whether the observed effect might have been caused by testosterone influencing follicle maturation or ovulation. We implanted mature female pigeons with testosterone prior to pairing, which resulted in constant elevation of circulating testosterone concentrations within the physiological range. We killed females after they had laid the first egg and measured ovarian and follicular development. Ovarian mass and pre‐hierarchical yolky follicles were not affected by the treatment; however, testosterone females produced smaller and lighter preovulatory follicles. High plasma testosterone levels at oviposition or a strong temporal increase in testosterone were negatively related to mass and diameter of second follicles. We proposed that sustained elevation of testosterone delays follicular maturation, potentially via negative feedback on the hypothalamo‐pituitary–gonadal axis.Furthermore, to gain better insight into the regulation of yolk hormone acquisition, we measured testosterone concentrations in the preovulatory follicles. We found no differences between treatment groups but follicle yolk contained much higher levels of testosterone than yolk of un‐incubated eggs, suggesting that hormone measurements performed after oviposition do not correctly reflect maternal allocation. J. Exp. Zool. 313A:328–338, 2010. © 2010 Wiley‐Liss, Inc.
Human bocavirus infection in children with acute respiratory tract infection in India
Authors: Bharaj Preeti , Sullender Wayne M. , Kabra Sushil K. , Broor Shobha 
Published: March 2010

AbstractHuman bocavirus (HBoV) is a new human parvovirus identified in children with respiratory tract disease. Nasopharyngeal aspirates were collected from 305 children <5 years of age with acute respiratory tract infection from April 2005 to March 2007 and screened for the presence of HBoV by two separate sets of a polymerase chain reaction (PCR) described previously. Twenty‐two (7.2%) children who had acute respiratory infection were found to be positive for HBoV by both sets of PCR. The main clinical symptoms were cough (95%), runny nose (64%), and fever (59%). In two samples, HBoV was identified together with respiratory syncytial virus in one sample and influenza A virus in another. HBoV appeared to have no seasonal distribution and is associated with both upper and lower respiratory tract disease in young children in India. J. Med. Virol. 82: 812–816, 2010. © 2010 Wiley‐Liss, Inc.
Genetic variation of prevalent G1P[8] human rotaviruses in South Korea
Authors: Le Van Phan , Chung Yeon‐Chang , Kim Kijeong , Chung Sang‐In , Lim Inseok , Kim Wonyong 
Published: March 2010

AbstractThe human rotavirus G1P[8] strain is one of the most common rotaviruses worldwide, including Korea. Six Korean G1P[8] human rotaviruses, isolated using cell culture techniques, were characterized on the basis of sequence differences in VP7, VP4, VP6, and NSP4 genes to elucidate the evolutionary relationships in the community. All strains had a long RNA electropherotype, supported by VP6 gene analysis, clearly associated with subgroup II specificity. The phylogenetic analysis of VP7 gene sequences showed that they all clustered into lineage I, as reported for G1 strains in Japan, China, Vietnam, and Thailand. In addition, phylogenetic analysis of the VP4 gene showed that they belong to two distinct lineages, P[8]‐II and P[8]‐III. With respect to the NSP4 gene, all strains belonged to genotype B. An understanding of the ecology and molecular evolution of rotaviruses circulating in the country is very important for the development of vaccines and vaccination strategies. This study provides new information concerning the genetic variability of the rotavirus strain G1P[8] occurring most commonly as a vaccine candidate. J. Med. Virol. 82: 886–896, 2010. © 2010 Wiley‐Liss, Inc.
A comparison of two commercially available anti‐HEV IgG kits and a re‐evaluation of anti‐HEV IgG seroprevalence data in developed countries
Authors: Bendall Richard , Ellis Vic , Ijaz Samreen , Ali Rachel , Dalton Harry 
Published: March 2010

AbstractIn developed countries, the incidence of hepatitis E virus (HEV) infection and the resulting seroprevalence are uncertain. Published estimates of seroprevalnce in these populations range from 0.26% to 31%, which may in part reflect the variety of assays used by different studies. This study compared the performance of two commercial assays (Genelabs [Singapore] and Wantai ‘Beijing, China’ HEV IgG EIA kits) and reviewed published estimates of anti‐HEV seroprevalence in developed countries. The assays were compared using the WHO anti‐HEV reference serum, sera from UK‐acquired cases of genotype 3 HEV infections and 500 UK blood donor sera. The PE2 assay was found to be more sensitive than the GL assay (lower limit of detection for HEV IgG 0.25 vs. 2.5 WHO units/ml); it was positive in more sera from proven cases (98% vs. 56%), remained positive for longer post infection and resulted in a substantially higher estimate of seroprevalence in blood donors (16.2% vs. 3.6%). these results suggest that published studies of HEV seroprevalence using the GL assay have underestimated the true figure and that a properly validated method is required to make meaningful comparisons of HEV seroprevalence between populations. J. Med. Virol. 82: 799–805, 2010. © 2010 Wiley‐Liss, Inc.
Viral etiology of respiratory infections in children under 5 years old living in tropical rural areas of Senegal: The EVIRA project
Authors: Niang Mbayame Ndiaye , Diop Ousmane M. , Sarr Fatoumata Diene , Goudiaby Deborah , Malou‐Sompy Hubert , Ndiaye Kader , Vabret Astrid , Baril Laurence 
Published: March 2010

AbstractAcute respiratory infection is one of the leading causes of child morbidity, especially in developing countries. Viruses are recognized as the predominant causative agents of acute respiratory infections. In Senegal, few data concerning the causes of respiratory infections are available, and those known relate mainly to classical influenza infections. Clinical and virological surveillance of acute respiratory infections was carried out in a rural community in children less than 5 years old. A standardized questionnaire was used and a nasopharyngeal swab sample was collected from each patient. These samples were tested for the detection of 20 respiratory viruses by multiplex RT‐PCR or by viral culture. A total of 82 acute respiratory episodes were included, and 48 (58.5%) were found to be positive, with a total of 55 viral detections; several samples were positive for two (n = 5) or 3 (n = 1) viruses. Ten different viruses were identified: influenza viruses A, B, and C (n = 25), human respiratory syncytial virus type A (n = 13), rhinoviruses (n = 8), human coronaviruses type 229E and NL63 (n = 6), parainfluenza viruses 3 and 4 (n = 2), and bocavirus (n = 1). These results provide evidence on the importance and the diversity of viruses as causative agents of acute respiratory infections in children living in a rural community in Senegal. The establishment of sentinel surveillance sites could help estimate the burden of acute respiratory infection in the pediatric population and should help prepare the health care systems to identify and respond to new viral respiratory emergencies. J. Med. Virol. 82:866–872, 2010. © 2010 Wiley‐Liss, Inc.
Prevalence and impact of occult hepatitis B infection in chronic hepatitis C patients treated with pegylated interferon and ribavirin
Authors: Levast Marion , Larrat Sylvie , Thelu Marie‐Ange , Nicod Sandrine , Plages Agnès , Cheveau Alice , Zarski Jean‐Pierre , Seigneurin Jean‐Marie , Morand Patrice , Leroy Vincent 
Published: March 2010

AbstractThe prevalence of occult hepatitis B, defined by absence of HBsAg and HBV DNA, ranges widely in patients with hepatitis C. This may influence the treatment of hepatitis C and the severity of liver disease. Sensitive and specific real‐time PCR techniques are available commercially and can detect more reliably low HBV DNA levels. The aim of this study was to determine the prevalence of occult hepatitis B virus infection using the COBAS Taqman assay (Roche Diagnostics, Meylan, France) in the serum and liver of HBsAg negative patients with chronic hepatitis C and to evaluate its clinical consequences on liver pathology and its impact on the response to treatment with peg‐IFNα and Ribavirin. HBV DNA detection was assessed retrospectively on 140 sera and 113 liver biopsies of HCV positive/HBsAg negative patients before treatment. A 4.4% (5/113) prevalence of occult hepatitis B was recorded in liver samples and in none of the sera. Anti‐HBc was not detected in one, three of whom were sustained virological responders to treatment, one was relapsed responder and one was non‐responder. Furthermore, in this cohort composed of 12% anti‐HBs negative/anti‐HBc positive and 20% anti‐HBs positive/anti‐HBc positive patients, anti‐HBc was not associated with pre‐therapeutic viral load, ALT serum levels, and histological activity or fibrosis. Using a commercial real‐time PCR assay, we observed a low prevalence of occult B hepatitis. This, just as anti‐HBC status, had no clinical impact in a large cohort of hepatitis C patients. It therefore does not appear useful to screen for occult hepatitis B in these patients with this test before beginning HCV treatment. J. Med. Virol. 82: 000–000, 2010. © 2010 Wiley‐Liss, Inc. J. Med. Virol. 82: 747–754, 2010. © 2010 Wiley‐Liss, Inc.
Prevalence of Epstein–Barr virus associated with nasal lymphoma in patients attending the regional hospital of Valdivia, Chile, between 1987 and 2005
Authors: Martin Carolina , Carrasco Cristian , Sotomayor Cristina , Otth Carola 
Published: March 2010

AbstractEpstein–Barr virus (EBV) is a ubiquitous herpes virus with a widespread infection in the world's adult population. EBV has been associated with human malignancies, mainly the nasal type NK/T cell lymphoma. The disease is more frequent in Asian than in Western countries. However, there are few studies from Latin American countries. The aim of this study was to determine the prevalence of EBV in patients with nasal lymphomas diagnosed in the Regional Hospital of Valdivia, southern Chile, during 1987–2005. Immunohistochemistry was done on paraffin sections using anti‐CD3ε, anti‐CD20, and anti‐CD56. The presence of small ribonucleic acids (RNAs) of EBV was detected in paraffin sections by in situ hybridization using oligonucleotides targeting EBV‐encoded small RNAs. The present study revealed a prevalence of 27.7% of Hodgkin's lymphomas and 72.3% of non‐Hodgkin's lymphomas. From the latter group, there was a prevalence of 2.9% (10 cases) of nasal lymphoma. From these 10 cases, 6 (60%) were NK/T cell lymphomas, nasal type; 1 case (10%) was a T‐cell phenotype; and 3 cases (30%) were B‐cell phenotype. The prevalence was higher than reports from Western countries, but lower than the reports from Asian countries. These results agreed with previous reports suggesting that EBV is strongly associated with T lymphomas. This study contributes new epidemiological data on EBV in Chile. J. Med. Virol. 82: 825–828, 2010. © 2010 Wiley‐Liss, Inc.
Neither molecular diversity of the envelope, immunosuppression status, nor proviral load causes indeterminate HTLV western blot profiles in samples from human T‐cell lymphotropic virus type 2 (HTLV‐2)‐infected individuals
Authors: Olah Ingrid , Fukumori Ligia M.I. , Smid Jerusa , de Oliveira Augusto César Penalva , Duarte Alberto J.S. , Casseb Jorge 
Published: March 2010

AbstractAlthough human T‐cell lymphotropic virus type 2 (HTLV‐2) is considered of low pathogenicity, serological diagnosis is important for counseling and monitoring. The confirmatory tests most used are Western blot (WB) and PCR. However, in high‐risk populations, about 50% of the indeterminate WB were HTLV‐2 positives by PCR. The insensitivity of the WB might be due to the use of recombinant proteins of strains that do not circulate in our country. Another possibility may be a high level of immunosuppression, which could lead to low production of virus, resulting in low stimulation of antibody. We found one mutation, proline to serine in the envelope region in the position 184, presented at least 1/3 of the samples, independent the indeterminate WB profile. In conclusion, we found no correlation of immune state, HTLV‐2 proviral load, or env diversity in the K55 region and WB indeterminate results. We believe that the only WB kit available in the market is probably more accurate to detect HTLV‐1 antibodies, and some improvement for HTLV‐2 detection should be done in the future, especially among high‐risk population. J. Med. Virol. 82: 837–842, 2010. © 2010 Wiley‐Liss, Inc.
Molecular detection and genetic variability of human metapneumovirus in Uruguay
Authors: Pizzorno A. , Masner M. , Médici C. , Sarachaga M.J. , Rubio I. , Mirazo S. , Frabasile S. , Arbiza J. 
Published: March 2010

AbstractHuman metapneumovirus (hMPV) has been described as circulating among the Uruguayan population at least since 1998 based on serologic evidence. However, no isolation attempts, molecular detection, or genetic studies have been carried out so far in the country. In the present study, molecular detection of circulating hMPV in children hospitalized with acute respiratory tract infection in Montevideo–Uruguay was carried out by reverse transcription‐polymerase chain reaction (RT‐PCR) amplification of the hMPV nucleoprotein (N) gene from 217 nasopharyngeal aspirates. Genetic variability analysis of the positive samples was performed by amplification and sequencing of both N and attachment glycoprotein (G) genes. Eighteen of the 217 samples tested positive for hMPV, with tachypnea, chest indrawing, and wheezing being the main clinical symptoms recorded. Phylogenetic analysis of N and G genes showed that Uruguayan samples clustered in genotypes described previously as A2, B1, and B2, with bootstrap values ≥98%. Sublineages A2a and A2b could also be distinguished within the samples that belong to A2. This is the first molecular report on the circulation of hMPV in Uruguay. The pattern of circulation of this virus, analyzed for both N and G genes independently, resembles the complex evolutionary pattern of respiratory syncytial virus (RSV). J. Med. Virol. 82:861–865, 2010. © 2010 Wiley‐Liss, Inc.
Induced tolerance to glutamate neurotoxicity through down‐regulation of NR2 subunits of N‐methyl‐D‐aspartate receptors in cultured rat striatal neurons
Authors: Kambe Yuki , Nakamichi Noritaka , Takarada Takeshi , Fukumori Ryo , Yoneda Yukio 
Published: March 2010

AbstractWe have previously shown differential vulnerabilities to glutamate (Glu) excitotoxicity mediated by the N‐methyl‐D‐aspartate (NMDA) receptor (NMDAR) between rat cortical and rat hippocampal neurons in culture. In this study, we evaluated the possible induced tolerance to NMDA neurotoxicity in cultured rat striatal neurons with prior sustained activation of NMDAR. Brief exposure to Glu or NMDA for 1 hr led to a significant decrease in cellular vitality determined 24 hr later in cultured rat striatal neurons, whereas no marked loss was seen in cellular survival after exposure to Glu or NMDA in striatal neurons previously cultured with Glu or NMDA. Sustained culture with Glu or NMDA invariably led to a significant decrease in protein levels of NR2, but not NR1, subunits without affecting their mRNA levels. Similar induced tolerance was seen to the excitotoxicity of NMDA in hippocampal neurons in a manner sensitive to an NMDAR antagonist. Prior culture with NMDA induced less effective alterations in both intracellular free Ca2+levels and mitochondrial membrane potentials after the addition of NMDA in striatal neurons. However, calpain inhibitor‐I significantly prevented the decreased NR2B and NR2C protein levels in striatal neurons cultured with NMDA. These results suggest that prior tonic activation of NMDAR would induce tolerance to the excitotoxicity mediated by NMDAR through a mechanism related to calpain‐induced down‐regulation of particular NR2 subunits in rat striatal neurons. © 2010 Wiley‐Liss, Inc.