bluuebunny/crossref_metadata_2025_split huggingface dataset:
First Report of Nasturtium as a Natural Host of Cherry leaf roll virus on Amsterdam Island
Authors: Marais A. , Faure C. , Candresse T. , Hullé M. 
Published: March 2010

Cherry leaf roll virus (CLRV) is a well-known virus belonging to the genus Nepovirus, but unlike most members of this genus, it is not known to be transmitted by nematodes but only through seeds and pollen. Since its first description in 1955 on Prunus avium L. in England (1), CLRV has been shown to have a worldwide distribution and a wide natural host range. During a survey of plant viruses in the French sub-Antarctic islands, samples from nasturtium plants (Tropaeolum majus), an introduced plant species, showing symptoms of leaf mosaic, deformation, and veinal necrosis were collected on Amsterdam Island. Upon mechanical transmission with sap extracts, necrotic ringspot and oak-leaf symptoms typical of Nepovirus infection were observed on the leaves of inoculated Nicotiana clevelandii and N. tabacum plants. Inoculation of healthy nasturtium plants resulted in mosaic and pin-point necrosis symptoms. Electron microscopy on negatively stained sap extracts revealed the presence of icosahedral virions, 28 to 30 nm in diameter, in the symptomatic Nicotiana leaves. Amplification by reverse transcription (RT)-PCR with a polyvalent test, which identifies viruses belonging to the family Comoviridae (2), yielded the expected 248-bp fragment. Sequencing of the cloned amplicon showed 80% nucleotide and 90% amino acid identity with a part of the RNA dependent RNA polymerase (RdRp) of CLRV (CAE83562). To confirm the presence of CLRV, an approximate 4.6-kbp cDNA fragment was PCR amplified from double-stranded RNAs purifed from infected Nicotiana plants using the sense primer 5′-GTGGGACTGCCATGCACCTACTC-3′ and an oligo-T25 as antisense primer. This PCR product (GenBank Accession No. GU167974) spans the region between the VPg gene and the polyA tail at the 3′ end of the genome and thus provides approximately 2.8 kb of new internal sequence information on RNA1 of CLRV. The presence of CLRV in the initial nasturtium samples was confirmed with a CLRV-specific RT-PCR assay that amplifies the 3′ non-coding region of the CLRV genome (3). Sequence of the amplified fragment showed it to be identical to the corresponding part of the 3′ non-coding region of 4.6-kbp clone obtained from the CLRV isolate mechanically transmitted to the N. tabacum and N. clevelandii plants. Experimental infection of nasturtium by CLRV has been reported (4), but to the best of our knowledge these results represent the first report of natural infection of T. majus by CLRV. Given its seed transmissible character in many hosts, CLRV likely was introduced in infected seeds of T. majus imported to the remote sub-Antarctic Amsterdam Island. References: (1) R. Cropley. Ann. Appl. Biol. 49:524, 1961. (2) V. Maliogka et al. J. Phytopathol. 152:404, 2004. (3) K. Rebenstorf et al. J. Virol. 80:2453, 2006. (4) K. Schmelzer. Phytopathol. Z. 55:317, 1966.
First Report of Impatiens necrotic spot virus on Spiderlily in China
Authors: Liu Y. T. , Zheng Y. X. , Li Y. Z. , Li Z. Y. 
Published: March 2010

Impatiens necrotic spot virus (INSV) (genus Tospovirus; family Bunyaviridae) is a devastating disease in the production of ornamental flowers (1). From 2007 to 2009, a survey of 10 major parks and recreation areas in Kunming, the capital of Yunnan Province, China, indicated that approximately 60 to 70% of Spiderlily (Hymenocallis littoralis Salisb.) plants from eight parks had symptoms of concentric ring spots and necrotic spots. Symptomatic plants were tested for INSV and Tomato spotted wilt virus (TSWV) with an immunostrip (Agdia Inc. Elkhart, IN). Results indicated that only the samples designated HDL were positive for INSV and all other samples were negative for both INSV and TSWV. Mechanically inoculated Emilia sonchifolia, Nicotiana glutinosa, Impatiens balsamina, and N. rustica showed chlorotic lesions, concentric rings, and severe necrosis, symptoms typical for INSV in these hosts. Electron microscope inspection found tospovirus-like spheroidal, enveloped particles that were 90 nm in diameter. Primer 5 software (Premier, Canada) was used to design 14 primers from GenBank Accession No. NC_003625 to amplify the L RNA, nine from NC_003616 to amplify the M RNA, and six from NC_003624 to amplify the S RNA. With total RNA extracted from infected plant tissue as templates in reverse transcription (RT)-PCR, these primers generated 29 target fragments of 250 to 900 bp. These fragments were cloned with the vector pMD19 simple-T vector (Takara Bio Inc., Dalian, China) and sequenced. The sequences of the clones were aligned with the software DNAman (version 2.5; Lynnon Biosoft, Quebec, Canada), showing that RNAs L, M, and S are 8,776 bp (GenBank Accession No. GU112505), 4,948 bp (GenBank Accession No. GU112503), and 2,875 bp (GenBank Accession No. GU112504), respectively. BLAST analysis of these Spiderlily INSV sequences against the NCBI sequence database indicated that the RdRp protein (L RNA) was 99.6% identical with the RdRp protein from an Italian isolate (No. DQ425094), the Nsm protein (M RNA) has 99.0% identity with the Nsm protein from an isolate from Italy (No. DQ425095) and one from the United States (No. NC_003616), the G1G2 polyprotein (M RNA) has 99.9% identity with the analogous protein from an Italian isolate (No. DQ425095), the N protein (S RNA) has 99.6% identity with the N protein from an Italian isolate (No. DQ425096), and the NSs protein (S RNA) has 98.7% identity with the NSs protein from an isolate from Japan (No. AB109100). To our knowledge, this is the first report of INSV on Spiderlily in China. Reference: (1) A. E. Whitfield et al. Annu. Rev. Phytopathol. 43:459, 2005.
First Report of Cucurbit yellow stunting disorder virus on Melon in China
Authors: Liu L. Z. , Chen Y. Y. , Zhu W. M. 
Published: March 2010

Melon (Cucumis melo L.) plants in commercial fields in Shanghai, Jiangsu, and Zhejiang exhibited stunting, deformation, interveinal chlorosis, and leaf mottling in the spring of 2008. In addition, adult and immature whiteflies (Bemisia tabaci biotype B) were present in these melon fields. Thirty-two symptomatic leaf samples were collected from these fields for further analysis (9 from Nanhui County in Shanghai, 11 from Fengxian County in Shanghai, 6 from Kunshan County of Jiangsu, and 6 from Jiashan County of Zhejiang). Total RNA was extracted from these samples along with asymptomatic control plants and screened for the presence of Cucurbit yellow stunting disorder virus (CYSDV) by using primers specific to genes encoding coat protein (2) and HSP70h (1) of CYSDV through reverse transcription (RT)-PCR methods. RNA was successfully extracted from 31 of 32 symptomatic samples. All 31 symptomatic leaf samples tested with coat protein primers were positive for CYSDV and yielded the expected fragment length of 394 bp. The RT-PCR products of the coat protein gene from all 31 isolates were cloned and found to be identical in sequence. Thus, only one was deposited in GenBank (No. GU189240). The submitted sequence of the amplified part of the coat protein gene was 99% identical to the sequence of coat protein gene of CYSDV from Jordan, France, and Florida (GenBank Accession Nos. DQ903107, AY204220, and EU596528, respectively) and 98% identical to that of an isolate from Spain (GenBank Accession No. AJ243000). Similarly, all 31 samples were also positive for CYSDV with the primers specific to HSP70h and yielded the expected fragment length of 175 bp. The RT-PCR products of the HSP70h gene from these isolates were also cloned and found to be identical in sequence. The sequence of the amplified portion of the HSP70h gene was found to be identical to the sequence of HSP70h of CYSDV deposited in GenBank (No. AJ439690.2). CYSDV was noticed in all three surveyed regions and the percentage of disease incidence was approximately 68% in all these regions. The occurrence of CYSDV has been previously reported in Europe (Spain and France), southern Asia (Iran and Jordan), North America (United States and Mexico), and other countries (1). To our knowledge, this is first report of CYSDV in China. References: (1) Y.-W. Kuo et al. Plant Dis. 91:330, 2007. (2) J. E. Polston et al. Plant Dis. 92:1251, 2008.
First Report of Tomato torrado virus on Tomato from Australia
Authors: Gambley C. F. , Thomas J. E. , Persley D. M. , Hall B. H. 
Published: March 2010

Since 2005, a disease of greenhouse tomatoes has been observed in the North Adelaide Plains of South Australia. Symptoms include chlorosis and necrotic lesions on the leaves, stunted plants, and leaves that are frequently distorted. Necrotic lesions typically had a light green or yellow margin and affected areas often fell out, leaving small holes. The onset of disease was generally associated with an increase in population of the greenhouse whitefly (Trialeurodes vaporariorum). Isometric virions (25 to 30 nm) were observed by electron microscopy in partially purified extracts, but no other virion types were observed. In 2008, reverse transcription (RT)-PCR products were obtained using primers specific for RNA-1 (TR1F/TR1R) and RNA-2 (TR2F/TR2R) of Tomato torrado virus (ToTV) (1) using a fresh diseased sample (isolate 2136) and a 2005 archived, lyophilized sample (isolate 1883). Cucumber mosaic virus was not detected in these samples by RT-PCR (data not shown). The RT-PCR products were cloned and sequenced. The partial 892-bp RNA-1 consensus nucleotide (nt) sequences of isolates 1883 (GenBank Accession No. GQ844869) and 2136 (GenBank No. GQ844871) were 100% identical. The partial 573-bp RNA-2 consensus nt sequences of isolates 1883 (GenBank No. GQ844870) and 2143 (GenBank No. GQ844872) were 99.8% identical. The partial RNA-1 and -2 nt sequences of isolate 1883 were 99.1% and 98.5% identical to the published ToTV sequences (RNA-1, GenBank No. DQ388879; RNA-2, GenBank No. DQ88880), respectively (2). For isolate 2136, the identities were 98.1 and 98.7%, respectively. The putative amino acid sequences were all 100% identical to the published sequences. The virus was graft transmitted to tomato cv. Grosse Lisse and Datura stramonium, in which typical disease symptoms and leaf chlorosis, respectively, were induced, and by mechanical inoculation to Nicotiana benthamiana, which displayed leaf chlorosis. All inoculated plant species indexed positive by RT-PCR for ToTV. Seeds were collected from known ToTV-infected plants and the seedlings were grown in isolation in an insect-proof glasshouse. None of the seedlings exhibited symptoms of virus infection, and ToTV was not detected in 97 seedlings from cv. Beatrice, 368 seedlings from cv. Ediez, or from 286 seedlings from cv. Loretto with the virus-specific RT-PCR assays. The pathway for entry of ToTV into Australia is unknown, and although seed transmission was suspected, no evidence for this could be found. To our knowledge, this represents the first report of ToTV from Australia. References: (1) H. Pospieszny et al. Plant Dis. 91:1364, 2007. (2) M. Verbeek et al. Arch. Virol. 152:881, 2007.
First Report of Crown Rot and Stem Rot Caused by Rhizoctonia solani AG-4 on Marmalade Bush in Italy
Authors: Polizzi G. , Aiello D. , Castello I. , Guarnaccia V. , Vitale A. 
Published: March 2010

Marmalade bush (Streptosolen jamesonii (Benth.) Miers), also known as fire bush, is an evergreen, perennial shrub in the family Solanaceae, which is native to South America (Colombia, Ecuador, and Peru). In Italy, this species is cultivated as an ornamental creeper or bush. During September 2009, a new disease was observed in a stock of ~10,000 pot-grown, 2-month-old plants of marmalade bush in a nursery in eastern Sicily, Italy. More than 50% of the plants exhibited symptoms of disease. Disease symptoms consisted of extensive water-soaked, dark brown lesions at the crown level that girdled entire stems and an internal brown discoloration of cortical tissue. Infected plants died within a few days. Diseased tissue was disinfested for 10 s in 1% NaOCl, rinsed with sterile water, and plated on potato dextrose agar (PDA) amended with streptomycin sulfate at 100 mg/liter. Fungal colonies were initially white, turned brown after 2 to 3 days, and produced irregularly shaped, brown sclerotia. Microscopic examination showed mycelium consistent with Rhizoctonia solani Kühn that branched at right angles, constricted at the base of the branch originating from primary hyphae, and septate near the constriction. The number of nuclei per hyphal cell was determined on cultures grown at 25°C on 2% water agar in petri plates by staining with 1% safranin O and 3% KOH solution (1) and examined at ×400. The hyphal cells were all multinucleate. Anastomosis group was determined by pairing isolates on 2% water agar in petri plates (2). Pairings were made with tester strains AG-1 IA, AG-2-2-1, AG-2-2IIIB, AG-2-2IV, AG-3, AG-4, AG-5, AG-6, and AG-11. Anastomosis was observed only with tester isolates of AG-4. Pathogenicity tests were performed by placing 1-cm2 plugs of PDA from 5-day-old mycelial cultures near the base of the stem on 25 potted, healthy, 2-month-old rooted cuttings of marmalade bush. The same number of plants treated with 1-cm2 PDA plugs served as controls. Following inoculation, all plants were maintained for 20 days at 25°C and 95% relative humidity under a 12-h fluorescent light/dark regimen. Crown and stem symptoms, identical to those observed in the nursery, developed 5 days after inoculation on all inoculated plants. Control plants remained symptomless. R. solani was consistently reisolated from symptomatic tissues and identified as previously described. To our knowledge, this is the first report of R. solani causing disease on marmalade bush. References: (1) R. J. Bandoni. Mycologia 71:873, 1979. (2) C. C. Tu and J. W. Kimbrough. Mycologia 65:941, 1973.
First Report of Sida golden mosaic virus Infecting Snap Bean (Phaseolus vulgaris) in Florida
Authors: Durham T. C. , Baker C. , Jones L. , Snyder L. Unruh 
Published: March 2010

In October 2006, snap bean (Phaseolus vulgaris ‘Titan’) plants in an Alachua County field exhibited symptoms of foliar mottling, puckering, and curl. Symptomatic plants were distributed along field margins infested with whiteflies (100% incidence). Six collected leaf specimens all tested positive for nuclear inclusion bodies typical of begomoviruses with the methodology outlined by Christie et al. (1). To confirm the putative begomovirus association, total DNA was extracted with Qiagen's DNeasy Plant Mini Kit (Qiagen, Valencia, CA). The degenerate Begomovirus primers 5′-GCCCACATYGTCTTYCCNGT-3′ and 5′-GGCTTYCTRTACATRGG-3′ were used to amplify a 1.1-kb fragment of DNA-A (2). Primers SiGMVf 5′-CCTAAGCGCGATTTGCCAT-3′ and SiGMVr 5′-TACAGGGAGCTAAATCCAGCT-3′ were designed to amplify the remaining 1.5 kb of the DNA-A component. The sequence of both PCR products was compiled to generate a complete sequence of an A component (2,633 nt). BLAST analysis of this sequence (GenBank Accession No. GQ357649) isolated from snap bean indicated 95% nucleotide identity to Sida golden mosaic virus (SiGMV) (GenBank Accession No. AF049336) isolated from Sida santaremensis from Florida. To our knowledge, this is the first report of SiGMV in Florida snap beans. Further study is warranted to examine the etiological and economic implications of this finding. References: (1) R. G. Christie et al. Phytopathology 76:124, 1986. (2) M. R. Rojas et al. Plant Dis. 77:340, 1993.
First Report of Fruit Basal Rot by Ceratocystis paradoxa on Coconut in Taiwan
Authors: Tzeng S. J. , Sun E. J. , Hsiao W. W. 
Published: March 2010

Since 2005, coconut fruits (Cocos nucifera L.) harvested from trees in southern Taiwan have shown symptoms of a fruit rot disease. The disease occurs only on harvested coconut fruits and is more serious during warmer seasons. Principal symptoms are blackening of the exocarps, mesocarps, and then the endocarps of coconut fruits from pedicel end or wounds on fruits. A fungus was consistently recovered from diseased fruits. Colonies on potato dextrose agar (PDA) were white, becoming black 1 to 2 days later, with a strong fruity aroma. The fungus produced two asexual spores, including phialospore-type conidia, which were hyaline to mid brown, cylindrical to somewhat oval and thick walled when mature, 8.5 to 16.0 × 4.7 to 6.7 μm, released from phialides measuring 80.0 to 155.0 × 5.0 to 7.8 μm, and chlamydospores, which were oval, black, 13.4 to 25.0 × 8.9 to 12.5 μm, and formed in short chains from specialized hyphal tips. Perithecia were produced after 2 months by mating isolates on coconut exocarp placed on PDA. Perithecia were brown, globose, 280 μm in diameter, with a 1,100-μm long neck. Ascospores generally were ellipsoid, but some were unequally bent, 12 × 3 μm. The temperature for hyphal growth of this fungus was 25 to 30°C, with a growth rate of 3.3 cm per day. It did not grow at temperatures lower than 10°C or higher than 35°C. On the basis of these characteristics, this fungus was identified as Ceratocystis paradoxa (Dade) C. Moreau (anamorph Thielaviopsis paradoxa (de Seynes) Höhn) (1). The internal transcribed spacer (ITS) region of mycelial DNA of two isolates was amplified with ITS5 and ITS4 primers and the PCR products were sequenced (GenBank Accession Nos. GU358207 and GU358206). BLAST analysis of both sequences showed 99% sequence similarity with C. paradoxa strain WIN(M) 925 (Accession No. DQ318203). Two of the isolates (BCRC 34425 and BCRC 34426) were deposited in the Bioresource Collection and Research Center, Hsinchu, Taiwan. Twenty-four detached healthy coconut fruits were inoculated by placing spore suspensions (1 × 105 spores/ml) of eight wild type isolates onto wounds created by removing the calyx. Symptoms similar to those observed in the field developed on inoculated fruits after incubating at room temperature for 10 days, but did not develop on six fruits that were wounded but not inoculated. The same pathogen was reisolated from the inoculated fruits but not the control fruits. C. paradoxa has been reported as causing disease of coconut fruits in Brazil (2), but to our knowledge, this is the first report of the disease in Taiwan. References: (1) G. Morgan-Jones. No. 143 in: CMI Descriptions of Pathogenic Fungi and Bacteria. Commonwealth Mycological Institute, Surrey, England, 1967. (2) V. Rossetti. “Crostas Pretas” das folhas e “Podridão Basal” dos frutos de coqueiro. O Biológico 21:54, 1955.
First Report in Argentina of Apple stem pitting virus Causing Pear Vein Yellows Disease in Pear
Authors: Rossini M. N. , Giayetto A. L. , Vera D. L. , Frayssinet S. 
Published: March 2010

Apple stem pitting virus (ASPV) is an important latent virus of apple trees transmitted by grafting. In pear trees, ASPV is associated with pear vein yellows and pear necrotic spot diseases. Symptoms consist of chlorotic leaf banding and red mottling and flecking along the veins and necrotic spotting in some cultivars may also occur (4). During the spring of 2007, chlorotic leaf banding was observed in Bartlett pear (Pyrus communis L.) trees from one orchard in Bahía Blanca (Buenos Aires Province) and in Anjou, Packham, Abate Fetel, and Bartlett pears in another orchard in General Roca (Río Negro Province). The percentage of symptomatic plants was 10% in both cases. Pooled samples consisting of eight leaves per tree, 25 samples from Bahía Blanca and 25 samples from General Roca, were tested by double-antibody sandwich (DAS)-ELISA with a polyclonal antiserum from BIOREBA AG (Reinach, Switzerland). Five samples from Bahía Blanca and ten from General Roca were positive by DAS-ELISA. Only four positive samples by DAS-ELISA were also positive by immunocapture-reverse transcription (RT)-PCR using virions trapped in a microcentrifuge tube (3). A fragment of 370 bp was amplified with specific primers from each of these four samples. Amplicons were cloned and the nucleotide sequences were determined for one clone of each sample (GenBank Accession Nos. GQ356781, GQ356782, GQ356783, and GQ356784). All sequences had the highest identities with coat protein genes of ASPV. One of them was 94% identical with the coat protein gene of isolate PA66 isolate from Germany (GenBank Accession No. D21829.1) (1). Losses in pear by ASPV have not been demonstrated yet in Argentina. However, when the virus is present with other virus or virus-like diseases, a synergistic effect may occur and growth reduction may exceed 50% (2). Because of the mild symptoms in pear plants, nurserymen or growers must take care when they select material for propagation, in part because laws requiring virus-free propagation material do not exist in Argentina. To our knowledge, this is the first report of ASPV in pears in Argentina. References: (1) W. Jelkmann. J. Gen. Virol. 75:1535, 1994. (2) A. L. Jones and H. S. Aldwinckle. Compendium of Apple and Pear Diseases. The American Phytopathological Society, St. Paul, MN, 1990. (3) W. Menzel et al. J. Virol. Methods 99:81, 2002. (4) M. Németh. Virus, Mycoplasma and Rickettsia Disease of Fruit Trees. Martinus Nijhoff Publishers, Dordrecht, the Netherlands, 1986.
First Report of Sour Rot Caused by Geotrichum citri-aurantii on Key Lime (Citrus aurantifolia) in Colima State, Mexico
Authors: Hernández-Montiel L. G. , Holguín-Peña R. J. , Latisnere-Barragan H. 
Published: March 2010

Sour rot caused by Geotrichum citri-aurantii (Ferraris) R. Cif. & F. Cif. (synonym G. candidum Link) is a disease that causes postharvest losses of lemon (Citrus limon Burm, f.), mandarin (C. reticulata Blanco), and orange (C. sinensis (L.) Osbeck) (2–4) worldwide, but it has not been described on key lime (C. aurantifolia (Chistm.) Swingle) from the State of Colima, Mexico. During the agricultural cycle from 2005 to 2007, 300 fruits of key lime were analyzed. Symptoms observed on approximately 40% of the fruits were wounds with a sour, fermented smell with 30% of the softened area covered with white mycelium. A Geotrichum sp. was isolated on potato dextrose agar (PDA). On the basis of morphological criteria (1) and sequencing the internal transcribed spacer (ITS1-5.8s-ITS2) region of rDNA (GenBank Accession No. EU131181), the fungus was identified as G. citri-aurantii. A sample of the fungus was deposited in the Biology Collection of Yeast and Fungi (Reg. No. CLT20) of Centro de Investigaciones Biológicas del Noroeste, Mexico. Key limes were inoculated with G. citri-aurantii by placing three drops (20 μl each) of a sterile water suspension of 106 arthroconidia/ml in three punctured wounds of 3-mm diameter produced with a sterile scalpel on the fruit surface. Ten plastic boxes with five fruit each were stored for 2 weeks at 20°C and 85% relative humidity. Sour rot symptoms on key lime inoculated with G. citri-aurantii were identical to fruit in the field. The control fruit inoculated with sterile water did not develop symptoms. The fungus was reisolated, confirming Koch's postulates. The test was repeated three times to confirm our diagnosis. To our knowledge, this is the first report of G. citri-aurantii causing sour rot on key lime in Colima, Mexico. References: (1) S. Gente et al. J. Ind. Microbiol. Biotechnol. 33:1019, 2006. (2) P. Plaza et al. J. Hortic. Sci. Biotechnol. 79:935, 2004. (3) J. L. Smilanick et al. Post. Biol. Tech. 47:226, 2008. (4) V. H. Tournas and E. Katsoudas, J. Food. Microbiol. 105:11, 2005.