bluuebunny/crossref_metadata_2025_split huggingface dataset:
Assessing the nitrate and phosphate uptake kinetics potential and growth performance of Gracilaria corticata var. cylindrica in shrimp farm water (SFW)
Authors: Sawant Om , Jaiswar Santlal 
Published: May 2024

AbstractGracilaria corticata var. cylindrica (GCC) was studied as a biofilter in shrimp farm water (SFW) and its growth and biochemical attributes in the medium were evaluated. GCC showed significant nutrient absorption from SFW, with maximum nitrate and phosphate uptake observed after the first 48 h. Nitrate depletion happened faster than phosphate, thus showing a higher affinity for nitrate uptake (78.4% removal) by GCC. Nutrient uptake kinetics followed the Michaelis–Menten curve, with Vmax values of 43.16 μM g dw−1 h−1 for nitrate and 67.50 μM g dw−1 h−1 for phosphate. Also, GCC’s low Km values (12.53 µM for nitrate, 1.91 µM for phosphate) indicated efficient nutrient utilization. GCC showed rapid growth in SFW, with a daily growth rate of 2.93 ± 0.19% d−1, comparable to the commercial MP1 media (3.54 ± 0.19% d−1) and greater to seawater (2.23 ± 0.13% d−1). Proximate analysis revealed consistent biochemical compositions across all three media, with carbohydrate and protein contents of 2.24 ± 0.41% and 0.76 ± 0.12%, respectively, in SFW. Pigment analysis revealed that pigment concentrations varied, with SFW having the greatest R-PE concentration (182.25 ± 32.77 µg g−1), followed by MP1 media and saltwater. R-PC concentrations followed a similar pattern, with SFW having the greatest concentration (85.73 ± 19.33 µg g−1). These findings highlight GCC’s potential as an efficient biofilter for reducing nitrate and phosphate levels in SFW, therefore offering a sustainable solution for aquaculture effluent management and the potential integration of GCC into shrimp farming practices.
Conversation: the history of science and the ‘big picture’
Authors: Barry Andrew , Christie J.R.R. , Cunningham Andrew , Jordanova Ludmilla , Poskett James , Secord James A. , Williams Perry 
Published: May 2024

AbstractThis conversation article brings together six of the original contributors to the 1993 Getting the Big Picture special issue of the British Journal for the History of Science. The contributors introduce their personal memories of the 1991 conference panel which formed the basis of that special issue. They also discuss the wider intellectual, institutional and political contexts of writing the history of science during the 1980s and 1990s, before concluding with reflections on the future of the discipline. The conversation was held live online via Microsoft Teams in March 2023. A professional transcript was produced by Sarah King. The transcript was then edited by James Poskett for length and clarity, before final edits were made by the contributors.
Pediatric CNS Inflammation and Infection: A Review of Immunopathology and Radiology
Authors: Pai Vivek , Hiremath Shivaprakash Basavanthaiah , Shroff Manohar 
Published: May 2024

ABSTRACT:
The innate and adaptive immune systems are critical in defense against pathogens and ensuring homeostasis. The central nervous system (CNS) was initially considered to be impermeable to immune cells due to the blood–brain barrier. However, this has now been debunked, with modern research delineating immune cell trafficking within the CNS, ensuring constant immune surveillance. However, these defenses may be breached in infections, which trigger an inflammatory cascade causing tissue damage. In addition, autoimmune conditions and genetic mutations may also lead to sustained proinflammatory molecule release causing significant CNS damage. Ensuing brain injury from most immune triggers is varied but may be associated with common patterns by virtue of a shared immune driver. MRI plays an important role in identifying these conditions and further enables understanding of their pathophysiology as well as their spatial predilection in the brain. In this review, we discuss basic immunology, the major CNS barriers to infections as well as the current understanding of selected pediatric infections and inflammatory processes.
Pilot study to evaluate a training programme for primary care physiotherapists in the assessment and management of benign paroxysmal positional vertigo
Authors: Burrows Lisa , Stevens Karen , Moss Anne 
Published: May 2024

AbstractObjectiveThis pilot study aimed to evaluate a training programme for primary care physiotherapists focused on the assessment and management of benign paroxysmal positional vertigo.MethodsA six-month training programme and toolkit utilising the revised Standards for Quality Improvement Reporting Excellence (‘SQUIRE 2.0’) guidelines was developed to facilitate the learning of new knowledge and skills in the assessment and management of benign paroxysmal positional vertigo following Gagne's model of instructional design. A pre- and post-training knowledge and confidence questionnaire evaluated the impact of the training programme.ResultsEleven participants started the training programme and five completed it. On average, knowledge increased by 54 per cent (range, 41–95 per cent) and confidence increased by 45 per cent (range, 31–76 per cent). A 73 per cent improvement in practical skills acquisition was demonstrated after the initial training session.ConclusionA structured approach to learning demonstrates improvements in knowledge, skills and confidence of physiotherapists in the evidence-based management of benign paroxysmal positional vertigo.
Pitfalls, patience and patients: developing a physiotherapy-led balance clinic
Authors: Tank Ed , Morrison Eleanor 
Published: May 2024

AbstractBackgroundBalance dysfunction and vestibular conditions are major problems requiring significant resources. There is significant national and international variation in management pathways for such patients.MethodsThis paper outlines a collaborative project run by the ENT department and two vestibular rehabilitation trained physiotherapists to establish a clinic to manage patients referred to ENT with vestibular and/or balance complaints. As part of a six-month pilot, two physiotherapy-led balance clinics were provided per week.ResultsA total of 159 new patients were seen, with only 15 needing ENT consultant input. This led to the successful creation of substantive posts; the clinic has seen 698 patients in its first two years.ConclusionPatient outcomes and experience have been positive, and accompanied by reduced waiting and in-service times. The authors discuss some of the pitfalls, challenges and opportunities of developing this type of clinic.
Contribution of diversity of social participation on the mental health of humanitarian migrants during resettlement
Authors: Jiang Weiqing , Yang Yuwei , He Yitong , Liu Qianyu , Deng Xueqing , Hua Yilin , Hayixibayi Alimila , Ni Yanyan , Guo Lan 
Published: May 2024

Abstract

Aims
By the end of 2022, an estimated 108.4 million individuals worldwide experienced forced displacement. Identifying modifiable factors associated with the mental illness of refugees is crucial for promoting successful integration and developing effective health policies. This study aims to examine the associations between the changes in the diversity of social participation and psychological distress among refugees throughout the resettlement process, specifically focusing on gender differences.

Methods
Utilizing data from three waves of a longitudinal, nationally representative cohort study conducted in Australia, this study involved 2399 refugees interviewed during Wave 1, 1894 individuals interviewed during Wave 3 and 1881 respondents during Wave 5. At each wave, we assessed psychological distress and 10 types of social participation across 3 distinct dimensions, including social activities, employment and education. The primary analysis employed mixed linear models and time-varying Cox models. Gender-stratified analyses and sensitivity analyses were performed.

Results
Refugees engaging in one type or two or more types of social participation, compared with those not engaging in any, consistently had lower psychological distress scores (β = −0.62 [95% confidence interval (CI), −1.07 to −0.17] for one type of social participation; β = −0.57 [95% CI, −1.04 to −0.10] for two or more types of social participation) and a reduced risk of experiencing psychological distress (hazard ratio [HR] = 0.81 [95% CI, 0.65–0.99] for one type of social participation; HR = 0.77 [95% CI, 0.61–0.97] for two or more types of social participation) during the resettlement period. When stratifying the results by gender, these associations in the adjusted models only remained significant in male refugees. Moreover, three specific types of social participation, namely sporting activities, leisure activities and current employment status, were most prominently associated with a reduced risk of psychological distress.

Conclusions
The findings of this cohort study suggest that social participation was consistently associated with reduced risks of psychological distress among male refugees during resettlement. These findings highlight the significance of promoting meaningful social participation and interaction may be an effective strategy to improve the mental health of refugees and facilitate their successful integration into society, especially among male refugees.
Time-varying living arrangements and suicide death in the general population sample: 14-year causal survival analysis via pooled logistic regression
Authors: Narita Z. , Shinozaki T. , Goto A. , Hori H. , Kim Y. , Wilcox H. C. , Inoue M. , Tsugane S. , Sawada N. 
Published: May 2024

Abstract

Aims
While past research suggested that living arrangements are associated with suicide death, no study has examined the impact of sustained living arrangements and the change in living arrangements. Also, previous survival analysis studies only reported a single hazard ratio (HR), whereas the actual HR may change over time. We aimed to address these limitations using causal inference approaches.

Methods
Multi-point data from a general Japanese population sample were used. Participants reported their living arrangements twice within a 5-year time interval. After that, suicide death, non-suicide death and all-cause mortality were evaluated over 14 years. We used inverse probability weighted pooled logistic regression and cumulative incidence curve, evaluating the association of time-varying living arrangements with suicide death. We also studied non-suicide death and all-cause mortality to contextualize the association. Missing data for covariates were handled using random forest imputation.

Results
A total of 86,749 participants were analysed, with a mean age (standard deviation) of 51.7 (7.90) at baseline. Of these, 306 died by suicide during the 14-year follow-up. Persistently living alone was associated with an increased risk of suicide death (risk difference [RD]: 1.1%, 95% confidence interval [CI]: 0.3–2.5%; risk ratio [RR]: 4.00, 95% CI: 1.83–7.41), non-suicide death (RD: 7.8%, 95% CI: 5.2–10.5%; RR: 1.56, 95% CI: 1.38–1.74) and all-cause mortality (RD: 8.7%, 95% CI: 6.2–11.3%; RR: 1.60, 95% CI: 1.42–1.79) at the end of the follow-up. The cumulative incidence curve showed that these associations were consistent throughout the follow-up. Across all types of mortality, the increased risk was smaller for those who started to live with someone and those who transitioned to living alone. The results remained robust in sensitivity analyses.

Conclusions
Individuals who persistently live alone have an increased risk of suicide death as well as non-suicide death and all-cause mortality, whereas this impact is weaker for those who change their living arrangements.
Growth and fecundity of Palmer amaranth escaping glufosinate in soybean with and without grass competition
Authors: Jones Eric A.L. , Bradshaw Colden L. , Contreras Diego J. , Cahoon Charles W. , Jennings Katherine M. , Leon Ramon G. , Everman Wesley J. 
Published: May 2024

Abstract
Field experiments were conducted at Clayton and Rocky Mount, North Carolina, during the summer of 2020 to determine the growth and fecundity of Palmer amaranth plants that survived glufosinate with and without grass competition in soybean crops. Glufosinate (590 g ai ha−1) was applied at early postemergence (when Palmer amaranth plants were 5 cm tall), mid-postemergence (7–10 cm), and late postemergence (>10 cm) and at orthogonal combinations of those timings. Nontreated Palmer amaranth was grown in weedy (i.e., intraspecific and grass competition), weed-free in-crop (WFIC), and weed-free fallow (WFNC) conditions for comparisons. No Palmer amaranth plants survived the sequential glufosinate applications and control decreased as the plants were treated at a larger size in both experiments. The apical and circumferential growth rate of Palmer amaranth surviving glufosinate was reduced by more than 44% compared with the WFNC Palmer amaranth. The biomass of Palmer amaranth plants that survived glufosinate was reduced by more than 87% compared with the WFNC Palmer amaranth. The fecundity of Palmer amaranth that survived glufosinate was reduced by more than 70% compared with WFNC Palmer amaranth. Palmer amaranth plants that survived glufosinate were as fecund as the WFIC Palmer amaranth in both experiments in soybean fields. The results prove that despite the significant vegetative growth rate decrease of Palmer amaranth that survived glufosinate, plants can be as fecund as nontreated plants. The trends in growth and fecundity of Palmer amaranth that survives glufosinate with and without grass competition were similar. These results suggest that glufosinate-treated grass weeds may not reduce the growth or fecundity of Palmer amaranth that survives glufosinate.
Existence of Electrostatic Ion Cyclotron Waves in a Laboratory Created E Region Ionospheric‐Like Plasma
Authors: Liu Yu , Jin Rong , Li Minchi , Huang Wenlong , Huang Kexin , Jiang Junnan , Yu Pengcheng , Lei Jiuhou 
Published: May 2024

AbstractMolecular ions are relatively cold in the E region ionosphere; however, they can upwell to the magnetosphere during geomagnetically active times. Resonance between electrostatic ion cyclotron (EIC) waves is a potential pathway to energize molecular ions. In this work, the E region ionospheric plasma was modeled in the laboratory, and EIC waves were excited by a nonuniform field‐aligned current. The EIC wave was excited even when the ion neutral collision frequency is much higher than the ion cyclotron frequency, and the fundamental frequency was observed to be below the ion cyclotron frequency. In addition, the wave dispersion of the collisional EIC wave was calculated, which shows a consistent trend with experimental results as the collisions increasing. Therefore, this work suggests that EIC waves can be excited in the E region ionospheric‐like plasma, which can support the explanation of the energization of molecular ions in the E region ionosphere.
Significant Local Sea Level Variations Caused by Continental Hydrology Signals
Authors: McGirr Rebecca , Tregoning Paul , Purcell Anthony , McQueen Herb 
Published: May 2024

AbstractSpace gravity missions have enabled the quantification of the mass component of sea‐level rise over the past two decades. Barystatic sea‐level rise is predominantly driven by melting polar ice sheets and mountain glaciers. However, continental hydrological processes also contribute to global sea level change at significant magnitudes. We show that for most coastal areas in low‐to‐mid latitudes, up to half of manometric sea‐level rise is due to changes in water storage in ice‐free continental regions. At other locations the direct attraction effect of anthropogenic pumping of groundwater over the duration of the Gravity Recovery and Climate Experiment (GRACE) and GRACE Follow‐On (GRACE‐FO) mission offsets sea‐level rise from ice sheet and glacier melt. If these trends in continental hydrological storage were to slow or stop, these regions would experience greatly accelerated sea‐level rise, posing a risk to coastal settlements and infrastructure, however, for most coastal communities current rates of sea‐level rise would be significantly reduced.
Gut microbial metabolite targets HDAC3-FOXK1-interferon axis in fibroblast-like synoviocytes to ameliorate rheumatoid arthritis
Authors: Chen Hongzhen , Fu Xuekun , Wu Xiaohao , Zhao Junyi , Qiu Fang , Wang Zhenghong , Wang Zhuqian , Chen Xinxin , Xie Duoli , Huang Jie , Fan Junyu , Yang Xu , Song Yi , Li Jie , He Dongyi , Xiao Guozhi , Lu Aiping , Liang Chao 
Published: May 2024

AbstractRheumatoid arthritis (RA) is an autoimmune disease. Early studies hold an opinion that gut microbiota is environmentally acquired and associated with RA susceptibility. However, accumulating evidence demonstrates that genetics also shape the gut microbiota. It is known that some strains of inbred laboratory mice are highly susceptible to collagen-induced arthritis (CIA), while the others are resistant to CIA. Here, we show that transplantation of fecal microbiota of CIA-resistant C57BL/6J mice to CIA-susceptible DBA/1J mice confer CIA resistance in DBA/1J mice. C57BL/6J mice and healthy human individuals have enriched B. fragilis than DBA/1J mice and RA patients. Transplantation of B. fragilis prevents CIA in DBA/1J mice. We identify that B. fragilis mainly produces propionate and C57BL/6J mice and healthy human individuals have higher level of propionate. Fibroblast-like synoviocytes (FLSs) in RA are activated to undergo tumor-like transformation. Propionate disrupts HDAC3-FOXK1 interaction to increase acetylation of FOXK1, resulting in reduced FOXK1 stability, blocked interferon signaling and deactivation of RA-FLSs. We treat CIA mice with propionate and show that propionate attenuates CIA. Moreover, a combination of propionate with anti-TNF etanercept synergistically relieves CIA. These results suggest that B. fragilis or propionate could be an alternative or complementary approach to the current therapies.
Angle between DNA linker and nucleosome core particle regulates array compaction revealed by individual-particle cryo-electron tomography
Authors: Zhang Meng , Díaz-Celis César , Liu Jianfang , Tao Jinhui , Ashby Paul D. , Bustamante Carlos , Ren Gang 
Published: May 2024

AbstractThe conformational dynamics of nucleosome arrays generate a diverse spectrum of microscopic states, posing challenges to their structural determination. Leveraging cryogenic electron tomography (cryo-ET), we determine the three-dimensional (3D) structures of individual mononucleosomes and arrays comprising di-, tri-, and tetranucleosomes. By slowing the rate of condensation through a reduction in ionic strength, we probe the intra-array structural transitions that precede inter-array interactions and liquid droplet formation. Under these conditions, the arrays exhibite irregular zig-zag conformations with loose packing. Increasing the ionic strength promoted intra-array compaction, yet we do not observe the previously reported regular 30-nanometer fibers. Interestingly, the presence of H1 do not induce array compaction; instead, one-third of the arrays display nucleosomes invaded by foreign DNA, suggesting an alternative role for H1 in chromatin network construction. We also find that the crucial parameter determining the structure adopted by chromatin arrays is the angle between the entry and exit of the DNA and the corresponding tangents to the nucleosomal disc. Our results provide insights into the initial stages of intra-array compaction, a critical precursor to condensation in the regulation of chromatin organization.
Structure and inhibition of the human lysosomal transporter Sialin
Authors: Schmiege Philip , Donnelly Linda , Elghobashi-Meinhardt Nadia , Lee Chia-Hsueh , Li Xiaochun 
Published: May 2024

AbstractSialin, a member of the solute carrier 17 (SLC17) transporter family, is unique in its ability to transport not only sialic acid using a pH-driven mechanism, but also transport mono and diacidic neurotransmitters, such as glutamate and N-acetylaspartylglutamate (NAAG), into synaptic vesicles via a membrane potential-driven mechanism. While most transporters utilize one of these mechanisms, the structural basis of how Sialin transports substrates using both remains unclear. Here, we present the cryogenic electron-microscopy structures of human Sialin: apo cytosol-open, apo lumen-open, NAAG–bound, and inhibitor–bound. Our structures show that a positively charged cytosol-open vestibule accommodates either NAAG or the Sialin inhibitor Fmoc-Leu-OH, while its luminal cavity potentially binds sialic acid. Moreover, functional analyses along with molecular dynamics simulations identify key residues in binding sialic acid and NAAG. Thus, our findings uncover the essential conformational states in NAAG and sialic acid transport, demonstrating a working model of SLC17 transporters.
Abiotic formation of alkylsulfonic acids in interstellar analog ices and implications for their detection on Ryugu
Authors: McAnally Mason , Bocková Jana , Herath Ashanie , Turner Andrew M. , Meinert Cornelia , Kaiser Ralf I. 
Published: May 2024

AbstractFor the last century, the source of sulfur in Earth’s very first organisms has remained a fundamental, unsolved enigma. While sulfates and their organic derivatives with sulfur in the S(+VI) oxidation state represent core nutrients in contemporary biochemistry, the limited bioavailability of sulfates during Earth’s early Archean period proposed that more soluble S(+IV) compounds served as the initial source of sulfur for the first terrestrial microorganisms. Here, we reveal via laboratory simulation experiments that the three simplest alkylsulfonic acids—water soluble organic S(+IV) compounds—can be efficiently produced in interstellar, sulfur-doped ices through interaction with galactic cosmic rays. This discovery opens a previously elusive path into the synthesis of vital astrobiological significance and untangles fundamental mechanisms of a facile preparation of sulfur-containing, biorelevant organics in extraterrestrial ices; these molecules can be eventually incorporated into comets and asteroids before their delivery and detection on Earth such as in the Murchison, Tagish Lake, and Allende meteorites along with the carbonaceous asteroid Ryugu.
Single-cell and spatial transcriptomics analysis of non-small cell lung cancer
Authors: De Zuani Marco , Xue Haoliang , Park Jun Sung , Dentro Stefan C. , Seferbekova Zaira , Tessier Julien , Curras-Alonso Sandra , Hadjipanayis Angela , Athanasiadis Emmanouil I. , Gerstung Moritz , Bayraktar Omer , Cvejic Ana 
Published: May 2024

AbstractLung cancer is the second most frequently diagnosed cancer and the leading cause of cancer-related mortality worldwide. Tumour ecosystems feature diverse immune cell types. Myeloid cells, in particular, are prevalent and have a well-established role in promoting the disease. In our study, we profile approximately 900,000 cells from 25 treatment-naive patients with adenocarcinoma and squamous-cell carcinoma by single-cell and spatial transcriptomics. We note an inverse relationship between anti-inflammatory macrophages and NK cells/T cells, and with reduced NK cell cytotoxicity within the tumour. While we observe a similar cell type composition in both adenocarcinoma and squamous-cell carcinoma, we detect significant differences in the co-expression of various immune checkpoint inhibitors. Moreover, we reveal evidence of a transcriptional “reprogramming” of macrophages in tumours, shifting them towards cholesterol export and adopting a foetal-like transcriptional signature which promotes iron efflux. Our multi-omic resource offers a high-resolution molecular map of tumour-associated macrophages, enhancing our understanding of their role within the tumour microenvironment.