bluuebunny/crossref_metadata_2025_split huggingface dataset:
In vitro
phenotypic susceptibility of HIV-1 non-group M to CCR5 inhibitor (maraviroc): TROPI-CO study
Authors: Gracias Ségolène , El Yaalaoui Ikrame , Visseaux Benoît , Charpentier Charlotte , Descamps Diane , Martin Charlène , Lermechain Fanny , Plantier Jean-Christophe , Alessandri-Gradt Elodie 
Published: May 2024

ABSTRACT

The susceptibility of genetically divergent HIV-1 strains (HIV-1 non-M) from groups O, N, and P to the CCR5 co-receptor antagonist, maraviroc (MVC), was investigated among a large panel of 45 clinical strains, representative of the viral genetic diversity. The results were compared to the reference strains of HIV-1 group M (HIV-1/M) with known tropism. Among the non-M strains, a wide range of phenotypic susceptibilities to MVC were observed. The large majority of HIV-1/O strains (40/42) displayed a high susceptibility to MVC, with median and mean IC
50
values of 1.23 and 1.33 nM, respectively, similar to the HIV-1/M R5 strain (1.89 nM). However, the two remaining HIV-1/O strains exhibited a lower susceptibility (IC
50
at 482 and 496 nM), in accordance with their dual/mixed (DM) tropism. Interestingly, the two HIV-1/N strains demonstrated varying susceptibility patterns, despite always having relatively low IC
50
values (2.87 and 47.5 nM). This emphasized the complexity of determining susceptibility solely based on IC
50
values. Our study examined the susceptibility of all HIV-1 non-M groups to MVC and correlated these findings with virus tropism (X4, R5, or DM). The results confirm the critical significance of tropism determination before initiating MVC treatment in patients infected with HIV-1 non-M. Furthermore, we advocate for the consideration of additional parameters, such as the slope of inhibition curves, to provide a more thorough characterization of phenotypic susceptibility profiles.

IMPORTANCE
Unlike HIV-1 group M, the scarcity of studies on HIV-1 non-M groups (O, N, and P) presents challenges in understanding their susceptibility to antiretroviral treatments, particularly due to their natural resistance to non-nucleoside reverse transcriptase inhibitors. The TROPI-CO study logically complements our prior investigations into integrase inhibitors and anti-gp120 efficacy. The largest panel of 45 non-M strains existing so far yielded valuable results on maraviroc (MVC) susceptibility. The significant variations in MVC IC50 reveal a spectrum of susceptibilities, with most strains displaying R5 tropism. Notably, the absence of MVC-resistant strains suggests a potential therapeutic avenue. The study also employs a robust novel cell-based phenotropism assay and identifies distinct groups of susceptibilities based on inhibition curve slopes. Our findings emphasize the importance of determining tropism before initiating MVC and provide crucial insights for selecting effective therapeutic strategies in the delicate context of HIV-1 non-M infections.
RPA-CRISPR/Cas12a-LFA combined with a digital visualization instrument to detect
Toxoplasma gondii
in stray dogs and cats in Zhejiang province, China
Authors: Sun Hao , Fan Jiyuan , Chu Hongkun , Gao Yafan , Fang Jiawen , Wu Qinli , Ding Haojie , Zhuo Xunhui , Kong QingMing , Lv HangJun , Zheng Bin , Lu Shaohong 
Published: May 2024

ABSTRACT

Toxoplasma gondii
, which causes toxoplasmosis, is prevalent in warm-blooded animals, such as cats, dogs, and humans.
T. gondii
causes economic losses to livestock production and represents a potential risk to public health. Dogs and cats are common hosts in the epidemiology of toxoplasmosis. The current molecular diagnostic tools for
T. gondii
infection require high technical skills, a laboratory environment, and complex instruments. Herein, we developed a recombinase polymerase amplification (RPA)-clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 12a (Cas12a) assay to detect
T. gondii
. The lowest limit of detection of the assay was 31 copies/μL for the
T. gondii B1
gene. In addition, we established a visual RPA-CRISPR/Cas12a lateral flow band assay (RPA-CRISPR/Cas12a-LFA) combined with a digital visualization instrument, which minimized the problem of false-negative results for weakly positive samples and avoided misinterpretation of the results by the naked eye, making the LFA assay results more accurate. The assay established in this study could identify
T. gondii
within 55 min with high accuracy and sensitivity, without cross-reaction with other tested parasites. The developed assay was validated by establishing a mouse model of toxoplasmosis. Finally, the developed assay was used to investigate the prevalence of
T. gondii
in stray cats and dogs in Zhejiang province, Eastern China. The positive rates of
T. gondii
infection in stray cats and dogs were 8.0% and 4.0%, respectively. In conclusion, the RPA-CRISPR/Cas12a-LFA is rapid, sensitive, and accurate for the early diagnosis of
T. gondii
, showing promise for on-site surveillance.

IMPORTANCE

Toxoplasma gondii
is a virulent pathogen that puts millions of infected people at risk of chronic disease reactivation. Hosts of
T. gondii
are distributed worldwide, and cats and dogs are common hosts of
T. gondii
. Therefore, rapid diagnosis of early
T. gondii
infection and investigation of its prevalence in stray dogs and cats are essential. Here, we established a visual recombinase polymerase amplification-clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 12a-assay combined with a lateral flow band assay and a digital visualization instrument. Detailed analyses found that the assay could be used for the early diagnosis of
T. gondii
without false-negative results. Moreover, we detected the prevalence of
T. gondii
in stray cats and dogs in Zhejiang province, China. Our developed assay provides technical support for the early diagnosis of
T. gondii
and could be applied in prevalence surveys of
T. gondii
in stray dogs and cats.
Kidney replacement therapies and ultrafiltration in cardiorenal syndrome
Authors: Villegas-Gutiérrez Luz Yareli , Núñez Julio , Kashani Kianoush , Chávez-Iñiguez Jonathan S. 
Published: May 2024

Background:
Some patients with cardiorenal syndrome 1 and congestion exhibit resistance to diuretics. This scenario complicates management and is associated with a worse prognosis. In some cases, rescue treatment may be considered by starting kidney replacement therapies or ultrafiltration. This decision is complex and necessitates a profound understanding of these techniques and the pathophysiology of this syndrome. These modalities are classified into continuous, intermittent, and ultrafiltration therapies, each with its own advantages and disadvantages that are pertinent in selecting the optimal treatment.
Summary:
In patients with diuretic-resistant cardiorenal syndrome, extracorporeal ultrafiltration and kidney replacement therapies have the potential to relieve congestion, restore the neurohormonal system, and improve quality of life.
Key message:
•	In cardiorenal syndrome the resistance to diuretics it is common.
•	Extracorporeal ultrafiltration and renal replacement therapies are rescue options that may improve the management of these patients.
•	Better understanding of these modalities will help the development of new devices which are friendlier, safer, and more affordable for patients in these clinical settings.
Screening of drought tolerance indices for selection of resistance wheat (Triticum aestivum L.) landraces under drought stress conditions
Authors: Singh Chandrakant , Pansuriya A.G. , Mamrutha H.M. , Vekaria D.M. 
Published: May 2024

Abstract
During the cropping season 2016-2017, an experiment was conducted in a split plot design to study the response of 25 wheat genotypes to drought stress under irrigated and minimal irrigation conditions. Different drought tolerance indices for 25 bread wheat (Triticum aestivum L.) genotypes were evaluated. The calculation drought tolerance indices was based on the grain yield of wheat under irrigated and water stress conditions. The result indicated a significant effect of drought stress on the yield of different wheat genotypes based on mean values of different drought tolerance indices. Among the studied different indices, mean productivity (MP), stress tolerance index (STI), and geometric mean productivity (GMP) were more efficient to discriminate between drought sensitive and drought tolerant genotypes based on the calculation of correlation coefficient and multivariate analysis. Twenty-five genotypes were classified into tolerant and susceptible groups through drought tolerance indices using cluster analysis. Among the genotypes, C-306, WH 1236, WH 1235, and GW 477 having higher yields under drought conditions which showing their stability under stress conditions. The most yield stable genotypes under adverse environment were identified by multivariate analysis of drought tolerance indices individually or in combination. From the result, we concluded that GMP, MP and STI are more efficient drought tolerance indices among other indices to identify stable genotypes under stress conditions.
Entomophagy in Mexico: current trends and outlook
Authors: Ronquillo-de Jesús E. , Aguilar-Méndez M.A. , Rodrı́guez-Ortega L.T. , San Juan-Lara J. 
Published: May 2024

Abstract
One-fifth of the edible insect species identified worldwide have been documented in Mexico. In states with an entomophagy tradition, insects have been incorporated into the local cuisine. Results show that the country has a wide diversity of climates and vegetation; thus, each state has its own set of edible insects. This narrative review aims to determine the current state of entomophagy in Mexico, divided into two segments: wild-collected insects, and farmed insect products, and to identify the current trends, both in research and in commercial products available. Wild-gathered insects are mostly purchased at local marketplaces, with prices varying widely, depending on the insect and the sales point. Increased demand for wild edible insects, and the loss of natural habitat, have put some insect species at risk of extinction. Since whole edible insects are wild-gathered and commercialised whole in traditional markets, there are currently no specific mandatory standards for food products containing insects as ingredients. Alongside traditional wild insect activities, there is a fledgling industry of farmed edible insect products which can be purchased online. In conclusion, while the wild-gathered edible insect market is well established, a farmed insect products market is developing, with manufacturers incorporating insect flour into food products where the insect element is inconspicuous, seeking to appeal to a wider range of consumers, yet most recent academic research focuses on wild edible insect species, with a near absence of research articles on the farmed insect species. The insect food product industry would benefit from a closer collaboration with the academic research sector. Furthermore, the lack of a specific regulation for manufacturing insect food products constitutes a disadvantage for firms seeking to export to countries with stricter regulations. Also, with the food safety concerns inherent in wild-gathered insect consumption, studies focusing on the sanitary aspects of entomophagy are insufficient.
Responses of nutrient utilization, rumen fermentation and microorganisms to different roughage of dairy buffaloes
Authors: He Shichun , Zhang Ruiyun , Wang Rongjiao , Wu Dongwang , Dai Sifan , Wang Zibei , Chen Tao , Mao Huaming , Li Qing 
Published: May 2024

AbstractDairy buffaloes are typically fed a high-forage, low-quality diet with high fiber. These conditions result in an inherent energy and protein inefficiency. In order to make full and rational use of feed resources and improve the production level and breeding efficiency of dairy buffaloes, the effects of various roughages on nutrient digestibility, ruminal fermentation parameters, and microorganisms in dairy buffaloes were studied in this experiment. Three ternary hybrid buffaloes, with an average body weight of 365 ± 22.1 kg, were selected and fitted with permanent rumen fistulas. They were fed six different diets, each consisting of 1 kg concentrate supplement and one of six types of roughage, including alfalfa hay (A diet), oat hay (O diet), whole corn silage (W diet), king grass (K diet), sugarcane shoot silage (S diet), and rice straw hay (R diet) according to an incomplete Latin square design of 3 × 6, respectively. The pre-feeding period of each period was 12 d. From day 13 to 15 was the official experimental period. During the prefeeding period, free feed intake for each roughage was determined, and during the experiment, the roughage was fed at 90% of the voluntary feed intake. Digestion and metabolism tests were carried out using the total manure collection method to determine the feed intake and fecal output of each buffalo, and to collect feed and fecal samples for chemical analysis. On day 15, rumen fluid samples were collected two hours after morning feeding to determine rumen fermentation parameters and bacterial 16 S rRNA high-throughput sequencing was performed. The results showed that DM and OM digestibility were greatest for the W diet and lowest for the S diet. The rumen pH of the O diet was significantly greater than that of the W diet. The concentration of rumen fluid NH3-N (mg/dL) increased with increased CP content. The concentration of total volatile fatty acids (mmol/L) in the rumen decreased with increased NDF content but increased with increased NFC content. The relative abundances of Bacteroidetes, Firmicutes, and Spirochaetes were 57.03-74.84%, 14.29-21.86%, and 0.44-1.43% in the different quality roughage groups. Bacteroidetes were mainly Prevotellaceae1 and Rikenellaceae RC_gut_group with relative abundances of 30.17-45.75% and 3.23-7.82%. The relative abundance of Patescibacteria and Spirochaetes decreased with increasing roughage quality. These results provide a theoretical and practical basis for evaluating the nutritional value of dairy buffalo feed, utilizing feed resources, matching rations, feeding scientifically, and protecting animal health.
Decoding drought resilience: a comprehensive exploration of the cotton Eceriferum (CER) gene family and its role in stress adaptation
Authors: Hamid Rasmieh , Ghorbanzadeh Zahra , Jacob Feba , Nekouei Mojtaba Khayam , Zeinalabedini Mehrshad , Mardi Mohsen , Sadeghi Akram , Ghaffari Mohammad Reza 
Published: May 2024

Abstract
Background
The cuticular wax serves as a primary barrier that protects plants from environmental stresses. The Eceriferum (CER) gene family is associated with wax production and stress resistance.

Results
In a genome-wide identification study, a total of 52 members of the CER family were discovered in four Gossypium species: G. arboreum, G. barbadense, G. raimondii, and G. hirsutum. There were variations in the physicochemical characteristics of the Gossypium CER (GCER) proteins. Evolutionary analysis classified the identified GCERs into five groups, with purifying selection emerging as the primary evolutionary force. Gene structure analysis revealed that the number of conserved motifs ranged from 1 to 15, and the number of exons varied from 3 to 13. Closely related GCERs exhibited similar conserved motifs and gene structures. Analyses of chromosomal positions, selection pressure, and collinearity revealed numerous fragment duplications in the GCER genes. Additionally, nine putative ghr-miRNAs targeting seven G. hirsutum CER (GhCER) genes were identified. Among them, three miRNAs, including ghr-miR394, ghr-miR414d, and ghr-miR414f, targeted GhCER09A, representing the most targeted gene. The prediction of transcription factors (TFs) and the visualization of the regulatory TF network revealed interactions with GhCER genes involving ERF, MYB, Dof, bHLH, and bZIP. Analysis of cis-regulatory elements suggests potential associations between the CER gene family of cotton and responses to abiotic stress, light, and other biological processes. Enrichment analysis demonstrated a robust correlation between GhCER genes and pathways associated with cutin biosynthesis, fatty acid biosynthesis, wax production, and stress response. Localization analysis showed that most GCER proteins are localized in the plasma membrane. Transcriptome and quantitative reverse transcription-polymerase chain reaction (qRT-PCR) expression assessments demonstrated that several GhCER genes, including GhCER15D, GhCER04A, GhCER06A, and GhCER12D, exhibited elevated expression levels in response to water deficiency stress compared to control conditions. The functional identification through virus-induced gene silencing (VIGS) highlighted the pivotal role of the GhCER04A gene in enhancing drought resistance by promoting increased tissue water retention.

Conclusions
This investigation not only provides valuable evidence but also offers novel insights that contribute to a deeper understanding of the roles of GhCER genes in cotton, their role in adaptation to drought and other abiotic stress and their potential applications for cotton improvement.
Effect of intramuscular diazepam infusion on herpes zoster-related pain in older patients: a randomized, double-blind, placebo-controlled trial
Authors: Ma Bingjie , Xu Meiling , Yang Lu , Huang Xuehua , Wang Peiliang , Ji Yun , Ma Ke 
Published: May 2024

Abstract
Objectives
This study evaluated the effectiveness, psychological effects, and sleep quality using intramuscular diazepam infusion compared with placebo in patients with herpes zoster (HZ)-related pain.

Methods
The patients were randomized to either the diazepam or control group. The diazepam group received an intramuscular injection of diazepam for 3 consecutive days, while the control group received an intramuscular injection of 0.9% normal saline. The primary outcome was pain relief on posttreatment day 4, as measured using the Visual Analog Scale (VAS). Moreover, anxiety and depression were evaluated using the Generalized Anxiety Disorder-7 (GAD7) and Patient Health Questionnaire-9 (PHQ9), respectively. Sleep quality was assessed using the Pittsburgh Sleep Quality Index (PSQI).

Results
In total, 78 patients were enrolled in the trial. The mean differences in VAS scores between the two groups were 0.62 (P = 0.049) on posttreatment day 3 and 0.66 (P = 0.037) on posttreatment day 4. The effective rates of pain management in the diazepam group ranged from 10.26 to 66.67%, which were higher than those in the control group on posttreatment days 3 and 4 (P < 0.05). The mean difference in PSQI scores between the diazepam and control groups was 1.36 (P = 0.034) on posttreatment day 7. No differences were found in the incidence of analgesia-adverse 1reactions between the diazepam and placebo groups.

Conclusions
The intramuscular injection of diazepam for 3 consecutive days provides effective pain management and improves the quality of life. Our study suggests that diazepam is more effective than the placebo in patients with HZ-related pain.

Trial registration
The study was prospectively registered at https://www.isrctn.com/trialist(Registration date: 24/01/2018; Trial ID: ISRCTN12682696).
Development and validation of a nomogram model for all-cause mortality risk in patients with chronic heart failure and atrial fibrillation
Authors: Guan Lin , Wang Chuan-He , Sun Hao , Sun Zhi-Jun 
Published: May 2024

Abstract
Background
As the global aging process continues to accelerate, heart failure (HF) has become an important cause of increased morbidity and mortality in elderly patients. Chronic atrial fibrillation (AF) is a major risk factor for HF. Patients with HF combined with AF are more difficult to treat and have a worse prognosis. The aim of this study was to explore the risk factors for 1-year mortality in patients with HF combined with AF and to develop a risk prediction assessment model.

Methods
We recruited hospitalized patients with HF and AF who received standardized care in the Department of Cardiology at Shengjing Hospital of China Medical University from January 2013 to December 2018. The patients were randomly divided into modeling and internal validation groups using a random number generator at a 1:1 ratio. Multivariate Cox regression analysis was used to identify risk factors for all-cause mortality during a one-year follow-up period. Then, a nomogram was constructed based on the weights of each index and validated. Receiver operating characteristic curve, the area under the curve (AUC), decision curve, and calibration curve analyses for survival were used to evaluate the model’s predictive and clinical validities and calibration.

Results
We included 3,406 patients who met the eligibility criteria; 1,703 cases each were included in the modeling and internal validation groups. Eight statistically significant predictors were identified: age, sex, New York Heart Association cardiac function class III or IV, a history of myocardial infarction, and the albumin, triglycerides, N-terminal pro-b-type natriuretic peptide, and blood urea nitrogen levels. The AUCs were 0.793 (95% confidence interval: 0.763–0.823) and 0.794 (95% confidence interval: 0.763–0.823) in the modeling and validation cohorts, respectively.

Conclusions
We present a predictive model for all-cause mortality in patients with coexisting HF and AF comprising eight key factors. This model gives clinicians a simple assessment tool that may improve the clinical management of these patients.
Lymph node metastasis in cutaneous squamous cell carcinoma of the head and neck
Authors: Fang Qigen , Yuan Junhui , Zhang Xu , Dai Liyuan , Luo Ruihua 
Published: May 2024

Abstract
Background
The study aimed to assess the impact of parotid lymph nodes (LNs) on the prognosis of patients with cutaneous squamous cell carcinomas of the head and neck (HNcSCC), and to develop an alternative LN assessment method to enhance locoregional control (LRC) and overall survival (OS) stratification.

Methods
We retrospectively enrolled patients with surgically treated HNcSCC. Primary outcome variables were LRC and OS. The influence of parotid LNs and different LN assessment methods on prognosis was analyzed using Cox models, and comparisons were made using the C-index, Akaike Information Criterion, and Bayesian Information Criterion.

Results
A total of 126 patients were included. Both intraparotid and periparotid LN statuses significantly linked with prognosis. The presence of extranodal extension (ENE) in cervical LNs, rather than parotid LNs, was predictive of decreased LRC and OS. In the Cox analysis, only N3 of the AJCC N classification, when compared to N0, showed reduced LRC and OS. In comparison to N0P1, only N0P3/N1P1 and N2P2/N2P3 of the O’Brien staging system tended to predict poorer LRC, with no subgroup emerging as an independent predictor for OS. The proposed LN assessment method, based on the number of metastatic LNs and ENE status in cervical LNs, demonstrated superior performance in terms of C-index, Akaike Information Criterion, and Bayesian Information Criterion compared to other systems.

Conclusion
Parotid LNs were significant determinants of prognosis in metastatic HNcSCC. The novel LN assessment method proposed (1–2 vs. 3–4 vs. 5 + or ENE) displayed similar survival stratification to the AJCC N and O’Brien staging systems.