bluuebunny/crossref_metadata_2025_split huggingface dataset:
Development and validation of Avena integrated management (AIM): a bioeconomic decision support tool for wild oat management in Australian grain production systems
Authors: Thornby David , Squires Caleb C. , Walsh Michael J. 
Published: May 2024

Abstract
Wild oat is a long-standing weed problem in Australian grain cropping systems, potentially reducing the yield and quality of winter grain crops significantly. The effective management of wild oat requires an integrated approach comprising diverse control techniques that suit specific crops and cropping situations. This research aimed to construct and validate a bioeconomic model that enables the simulation and integration of weed control technologies for wild oat in grain production systems. The Avena spp. integrated management (AIM) model was developed with a simple interface to provide outputs of biological and economic data (crop yields, weed control costs, emerged weeds, weed seedbank, gross margins) on wild oat management data in a cropping rotation. Uniquely, AIM was validated against real-world data on wild oat management in a wheat and sorghum cropping rotation, where the model was able to reproduce the patterns of wild oat population changes as influenced by weed control and agronomic practices. Correlation coefficients for 12 comparison scenarios ranged between 0.55 and 0.96. With accurate parameterization, AIM is thus able to make useful predictions of the effectiveness of individual and integrated weed management tactics for wild oat control in grain cropping systems.
Evaluating the vegetative and reproductive response of hemp (Cannabis sativa) to simulated off-target events of 2,4-D and dicamba
Authors: Essman Alyssa I. , Loux Mark M. , Lindsey Alexander J. , Kelly Michael , Yao Siyu , Jordan Cameron 
Published: May 2024

Abstract
Introducing soybean cultivars resistant to 2,4-D and dicamba allowed for postemergence applications of these herbicides. These herbicides pose a high risk for off-target movement, and the potential influence on crops such as hemp is unknown. Two studies were conducted from 2020 through 2022 in controlled environments to evaluate hemp response to rates simulating off-target events of 2,4-D and dicamba. The objectives of these studies were to (1) determine the effects of herbicide (2,4-D and dicamba) and rate (1× to 1/100,000× labeled rate) on visible injury, height, and branching, and (2) determine the effect of 2,4-D rate (1× to 1/100,000× labeled rate) on visible injury, height, branching, and reproductive parameters. Herbicides were applied in the early vegetative stage, and evaluations took place 14 and 28 d after treatment (DAT) and at trial termination (42 DAT in the greenhouse trial and at harvest in the growth chamber trial). In the greenhouse study, 2,4-D and dicamba at the 1× rate, and the 1/10× rate of dicamba, caused 68%, 78%, and 20% injury 28 DAT, respectively. At the time of trial termination 42 DAT, plants treated with 1× rates of 2,4-D and dicamba, or 1/10× dicamba, were 19, 25, and 9 cm shorter than the nontreated control, respectively. Simulated off-target rates of 2,4-D and dicamba did not influence branching or plant weight at trial termination. In the growth chamber study, the 1× and 1/10× rates of 2,4-D caused 82% and 2% injury 28 DAT, respectively. Plant height, fresh weight, and cannabidiol (CBD) levels of plants treated with simulated off-target rates of 2,4-D were not different from the nontreated control. These studies suggest that hemp grown for CBD exposed to off-target rates of 2,4-D or dicamba in early vegetative stages may not have distinguishable effects 42 DAT or at harvest.
Efficacy of dicamba and dicamba/tembotrione with and without ammonium sulfate for broadleaf weed control
Authors: Singh Mandeep , Barnes Ethann , Dintelmann Brian , Bradley Kevin , Hager Aaron , Jhala Amit J. 
Published: May 2024

Abstract
Mixing ammonium sulfate (AMS) can increase dicamba volatility. Therefore, AMS cannot be used with dicamba products in dicamba-resistant soybean. However, most dicamba products applied in corn are labeled to mix with AMS. The objectives of this study were to evaluate broadleaf weed control with dicamba (DiFlexx®) and dicamba/tembotrione (DiFlexx® DUO) applied alone or with AMS or AMS substitute and their effect on broadleaf weed density and biomass. Field experiments were conducted in Illinois, Missouri, and Nebraska in 2018 and 2019. In Illinois and Nebraska, mixing AMS + crop oil concentrate (COC) with dicamba applied at 1,120 g ae ha−1 increased the control of Palmer amaranth and waterhemp (Amaranthus species) from 78% to 92% and velvetleaf from 73% to 96% compared with dicamba applied alone 14 d after application (DAA); however, Missouri data showed no difference. Mixing AMS + COC with dicamba/tembotrione at 597 and 746 g ai ha−1 did not improve broadleaf weed control 14 DAA at any site compared with dicamba/tembotrione applied alone. Control of Amaranthus species was increased from 82% with dicamba applied at 840 g ae ha−1 to 96% when mixed with AMS + COC 28 DAA in Illinois; however, control was similar to dicamba applied at 1,120 g ae ha−1. Broadleaf weed control did not differ among dicamba or dicamba/tembotrione 28 and 56 DAA in Missouri and Nebraska. Broadleaf weed density decreased from 64 plants m−2 to 24 plants m−2 with dicamba at 1,120 g ae ha−1 with AMS + COC 14 DAA in Nebraska; however, no differences were observed in broadleaf weed density or biomass 56 DAA in any state. The results suggest that dicamba or dicamba/tembotrione can be applied without AMS or AMS substitute, especially at higher rates, without losing broadleaf weed control efficacy.
Assessing Rheology Effects and Pore Space Complexity in Polymer Flow Through Porous Media: A Pore‐Scale Simulation Study
Authors: Amiri Mehdi , Qajar Jafar , Raeini Ali Q. , Raoof Amir 
Published: May 2024

AbstractNon‐Newtonian fluid flow within porous media, exemplified by polymer remediation of contaminated groundwater/aquifer systems, presents complex challenges due to the fluids' complex rheological behavior within 3D tortuous pore structures. This paper introduces a pore‐scale flow simulator based on the OpenFOAM open‐source library, designed to model shear‐thinning flow within porous media. Leveraging this developed solver, extensive pore‐scale flow simulations were conducted on μ‐CT images of various real and synthetic porous media with varying complexity for both power‐law and Cross‐fluid models. We focused on the macroscale‐averaged deviation between bulk viscosity and the in‐situ viscosity, commonly denoted by a shift factor. We provided an in‐depth evaluation of the shift factor's dependency on the fluid's rheological attributes and the rock's pore space complexity. The least‐squares fitted values of the shift factor fell in the range of 1.6–9.5. Notably, the most pronounced shift factor emerged for extreme flow behavior indices. Our findings highlight not just the critical role of rheological parameters, but also demonstrate how the shift factor fluctuates based on tortuosity, characteristic pore length, and the cementation exponent. In particular, less porous/permeable systems with smaller characteristic pore lengths exhibited larger shift factors due to higher variations of shear rate and local viscosity in narrower flow paths. Additionally, the shift factor increased as rock became more tortuous and heterogeneous. The introduced pore‐scale simulation proves instrumental in determining the macroscopic averaged shift factor. This, in consequence, is vital for precise computations of viscosity and pressure drop when dealing with non‐Newtonian fluid flow in porous media.
Pharmacogenomic insights in psychiatric care: uncovering novel actionability, allele-specific CYP2D6 copy number variation, and phenoconversion in 15,000 patients
Authors: Patel Jai N. , Morris Sarah A. , Torres Raul , Rhead Brooke , Vlangos Chris , Mueller Daniel J. , Brown Lisa C. , Lefkofsky Hailey , Ali Muneer , De La Vega Francisco M. , Barnes Kathleen C. , Zoghbi Anthony , Stanton Joseph D. , Badgeley Marcus A. 
Published: May 2024

AbstractPharmacogenomic testing has emerged as an aid in clinical decision making for psychiatric providers, but more data is needed regarding its utility in clinical practice and potential impact on patient care. In this cross-sectional study, we determined the real-world prevalence of pharmacogenomic actionability in patients receiving psychiatric care. Potential actionability was based on the prevalence of CYP2C19 and CYP2D6 phenotypes, including CYP2D6 allele-specific copy number variations (CNVs). Combined actionability additionally incorporated CYP2D6 phenoconversion and the novel CYP2C-TG haplotype in patients with available medication data. Across 15,000 patients receiving clinical pharmacogenomic testing, 65% had potentially actionable CYP2D6 and CYP2C19 phenotypes, and phenotype assignment was impacted by CYP2D6 allele-specific CNVs in 2% of all patients. Of 4114 patients with medication data, 42% had CYP2D6 phenoconversion from drug interactions and 20% carried a novel CYP2C haplotype potentially altering actionability. A total of 87% had some form of potential actionability from genetic findings and/or phenoconversion. Genetic variation detected via next-generation sequencing led to phenotype reassignment in 22% of individuals overall (2% in CYP2D6 and 20% in CYP2C19). Ultimately, pharmacogenomic testing using next-generation sequencing identified potential actionability in most patients receiving psychiatric care. Early pharmacogenomic testing may provide actionable insights to aid clinicians in drug prescribing to optimize psychiatric care.
Metastasis-associated fibroblasts in peritoneal surface malignancies
Authors: Ramos Cristiano , Gerakopoulos Vasileios , Oehler Rudolf 
Published: May 2024

AbstractOver decades, peritoneal surface malignancies (PSMs) have been associated with limited treatment options and poor prognosis. However, advancements in perioperative systemic chemotherapy, cytoreductive surgery (CRS), and hyperthermic intraperitoneal chemotherapy (HIPEC) have significantly improved clinical outcomes. PSMs predominantly result from the spread of intra-abdominal neoplasia, which then form secondary peritoneal metastases. Colorectal, ovarian, and gastric cancers are the most common contributors. Despite diverse primary origins, the uniqueness of the peritoneum microenvironment shapes the common features of PSMs. Peritoneal metastization involves complex interactions between tumour cells and the peritoneal microenvironment. Fibroblasts play a crucial role, contributing to tumour development, progression, and therapy resistance. Peritoneal metastasis-associated fibroblasts (MAFs) in PSMs exhibit high heterogeneity. Single-cell RNA sequencing technology has revealed that immune-regulatory cancer-associated fibroblasts (iCAFs) seem to be the most prevalent subtype in PSMs. In addition, other major subtypes as myofibroblastic CAFs (myCAFs) and matrix CAFs (mCAFs) were frequently observed across PSMs studies. Peritoneal MAFs are suggested to originate from mesothelial cells, submesothelial fibroblasts, pericytes, endothelial cells, and omental-resident cells. This plasticity and heterogeneity of CAFs contribute to the complex microenvironment in PSMs, impacting treatment responses. Understanding these interactions is crucial for developing targeted and local therapies to improve PSMs patient outcomes.
Cardiopulmonary deconditioning and plasma volume loss are not sufficient to provoke orthostatic hypertension
Authors: Hoenemann J.-N. , Moestl S. , de Boni L. , Hoffmann F. , Arz M. , Berger L. , Pesta D. , Heusser K. , Mulder E. , Lee S. M. C. , Macias B. R. , Tank J. , Jordan J. 
Published: May 2024

AbstractOrthostatic hypertension, defined by an increase of systolic blood pressure (SBP) of ≥20 mmHg upon standing, harbors an increased cardiovascular risk. We pooled data from two rigorously conducted head-down tilt bedrest studies to test the hypothesis that cardiopulmonary deconditioning and hypovolemia predispose to orthostatic hypertension. With bedrest, peak VO2 decreased by 6 ± 4 mlO2/min/kg (p < 0.0001) and plasma volume by 367 ± 348 ml (p < 0.0001). Supine SBP increased from 127 ± 9 mmHg before to 133 ± 10 mmHg after bedrest (p < 0.0001). In participants with stable hemodynamics following head-up tilt, the incidence of orthostatic hypertension was 2 out of 67 participants before bedrest and 2 out of 57 after bedrest. We conclude that in most healthy persons, cardiovascular deconditioning and volume loss associated with long-term bedrest are not sufficient to cause orthostatic hypertension.
Na in diamond: high spin defects revealed by the ADAQ high-throughput computational database
Authors: Davidsson Joel , Stenlund William , Parackal Abhijith S. , Armiento Rickard , Abrikosov Igor A. 
Published: May 2024

AbstractColor centers in diamond are at the forefront of the second quantum revolution. A handful of defects are in use, and finding ones with all the desired properties for quantum applications is arduous. By using high-throughput calculations, we screen 21,607 defects in diamond and collect the results in the ADAQ database. Upon exploring this database, we find not only the known defects but also several unexplored defects. Specifically, defects containing sodium stand out as particularly relevant because of their high spins and predicted improved optical properties compared to the NV center. Hence, we studied these in detail, employing high-accuracy theoretical calculations. The single sodium substitutional (NaC) has various charge states with spin ranging from 0.5 to 1.5, ZPL in the near-infrared, and a high Debye-Waller factor, making it ideal for biological quantum applications. The sodium vacancy (NaV) has a ZPL in the visible region and a potential rare spin-2 ground state. Our results show sodium implantation yields many interesting spin defects that are valuable additions to the arsenal of point defects in diamond studied for quantum applications.
Lattice-commensurate skyrmion texture in a centrosymmetric breathing kagome magnet
Authors: Hirschberger Max , Szigeti Bertalan G. , Hemmida Mamoun , Hirschmann Moritz M. , Esser Sebastian , Ohsumi Hiroyuki , Tanaka Yoshikazu , Spitz Leonie , Gao Shang , Kolincio Kamil K. , Sagayama Hajime , Nakao Hironori , Yamasaki Yuichi , Forró László , Krug von Nidda Hans-Albrecht , Kezsmarki Istvan , Arima Taka-hisa , Tokura Yoshinori 
Published: May 2024

AbstractSkyrmion lattices (SkL) in centrosymmetric materials typically have a magnetic period on the nanometer-scale, so that the coupling between magnetic superstructures and the underlying crystal lattice cannot be neglected. We reveal the commensurate locking of a SkL to the atomic lattice in Gd3Ru4Al12 via high-resolution resonant elastic x-ray scattering (REXS). Weak easy-plane magnetic anisotropy, demonstrated here by a combination of ferromagnetic resonance and REXS, penalizes placing a skyrmion core on a site of the atomic lattice. Under these conditions, a commensurate SkL, locked to the crystal lattice, is stable at finite temperatures – but gives way to a competing incommensurate ground state upon cooling. We discuss the role of Umklapp-terms in the Hamiltonian for the formation of this lattice-locked state, its magnetic space group, and the role of slight discommensurations, or (line) defects in the magnetic texture. We also contrast our findings with the case of SkLs in noncentrosymmetric material platforms.
Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches
Authors: Hsieh Yunli Eric , Tandon Kshitij , Verbruggen Heroen , Nikoloski Zoran 
Published: May 2024

AbstractGenome-scale metabolic models (GEMs) of microbial communities offer valuable insights into the functional capabilities of their members and facilitate the exploration of microbial interactions. These models are generated using different automated reconstruction tools, each relying on different biochemical databases that may affect the conclusions drawn from the in silico analysis. One way to address this problem is to employ a consensus reconstruction method that combines the outcomes of different reconstruction tools. Here, we conducted a comparative analysis of community models reconstructed from three automated tools, i.e. CarveMe, gapseq, and KBase, alongside a consensus approach, utilizing metagenomics data from two marine bacterial communities. Our analysis revealed that these reconstruction approaches, while based on the same genomes, resulted in GEMs with varying numbers of genes and reactions as well as metabolic functionalities, attributed to the different databases employed. Further, our results indicated that the set of exchanged metabolites was more influenced by the reconstruction approach rather than the specific bacterial community investigated. This observation suggests a potential bias in predicting metabolite interactions using community GEMs. We also showed that consensus models encompassed a larger number of reactions and metabolites while concurrently reducing the presence of dead-end metabolites. Therefore, the usage of consensus models allows making full and unbiased use from aggregating genes from the different reconstructions in assessing the functional potential of microbial communities.
Replicon particle vaccination induces non-neutralizing anti-nucleoprotein antibody-mediated control of Crimean-Congo hemorrhagic fever virus
Authors: Sorvillo Teresa E. , Karaaslan Elif , Scholte Florine E. M. , Welch Stephen R. , Coleman-McCray JoAnn D. , Genzer Sarah C. , Ritter Jana M. , Hayes Heather M. , Jain Shilpi , Pegan Scott D. , Bergeron Éric , Montgomery Joel M. , Spiropoulou Christina F. , Spengler Jessica R. 
Published: May 2024

AbstractCrimean-Congo hemorrhagic fever virus (CCHFV) can cause severe human disease and is considered a WHO priority pathogen due to the lack of efficacious vaccines and antivirals. A CCHF virus replicon particle (VRP) has previously shown protective efficacy in a lethal Ifnar-/- mouse model when administered as a single dose at least 3 days prior to challenge. Here, we determine that non-specific immune responses are not sufficient to confer short-term protection, since Lassa virus VRP vaccination 3 days prior to CCHFV challenge was not protective. We also investigate how CCHF VRP vaccination confers protective efficacy by examining viral kinetics, histopathology, clinical analytes and immunity early after challenge (3 and 6 days post infection) and compare to unvaccinated controls. We characterize how these effects differ based on vaccination period and correspond to previously reported CCHF VRP-mediated protection. Vaccinating Ifnar-/- mice with CCHF VRP 28, 14, 7, or 3 days prior to challenge, all known to confer complete protection, significantly reduced CCHFV viral load, mucosal shedding, and markers of clinical disease, with greater reductions associated with longer vaccination periods. Interestingly, there were no significant differences in innate immune responses, T cell activation, or antibody titers after challenge between groups of mice vaccinated a week or more before challenge, but higher anti-NP antibody avidity and effector function (ADCD) were positively associated with longer vaccination periods. These findings support the importance of antibody-mediated responses in VRP vaccine-mediated protection against CCHFV infection.
Typical and extreme weather datasets for studying the resilience of buildings to climate change and heatwaves
Authors: Machard Anaïs , Salvati Agnese , P. Tootkaboni Mamak , Gaur Abhishek , Zou Jiwei , Wang Liangzhu Leon , Baba Fuad , Ge Hua , Bre Facundo , Bozonnet Emmanuel , Corrado Vincenzo , Luo Xuan , Levinson Ronnen , Lee Sang Hoon , Hong Tianzhen , Salles Olinger Marcelo , Machado Rayner Maurício e Silva , da Guarda Emeli Lalesca Aparecida , Veiga Rodolfo Kirch , Lamberts Roberto , Afshari Afshin , Ramon Delphine , Ngoc Dung Ngo Hoang , Sengupta Abantika , Breesch Hilde , Heijmans Nicolas , Deltour Jade , Kuborn Xavier , Sayadi Sana , Qian Bin , Zhang Chen , Rahif Ramin , Attia Shady , Stern Philipp , Holzer Peter 
Published: May 2024

Abstract
We present unprecedented datasets of current and future projected weather files for building simulations in 15 major cities distributed across 10 climate zones worldwide. The datasets include ambient air temperature, relative humidity, atmospheric pressure, direct and diffuse solar irradiance, and wind speed at hourly resolution, which are essential climate elements needed to undertake building simulations. The datasets contain typical and extreme weather years in the EnergyPlus weather file (EPW) format and multiyear projections in comma-separated value (CSV) format for three periods: historical (2001–2020), future mid-term (2041–2060), and future long-term (2081–2100). The datasets were generated from projections of one regional climate model, which were bias-corrected using multiyear observational data for each city. The methodology used makes the datasets among the first to incorporate complex changes in the future climate for the frequency, duration, and magnitude of extreme temperatures. These datasets, created within the IEA EBC Annex 80 “Resilient Cooling for Buildings”, are ready to be used for different types of building adaptation and resilience studies to climate change and heatwaves.
Effective fabrication and characterization of eco-friendly nano particles composite for adsorption Cd (II) and Cu (II) ions from aqueous solutions using modelling studies
Authors: Hamad Mohammed Taha Moustafa Hussien , Ibrahim Sabah 
Published: May 2024

AbstractThe public health and environment are currently facing significant risks due to the discharge of industrial wastewater, which contains harmful heavy metals and other contaminants. Therefore, there is a pressing need for sustainable and innovative technologies to treat wastewater. The main objective of this research was to develop novel composites known as chitosan, Padina pavonica, Fe(III), and nano MgO incorporated onto pomegranate peel with the specific purpose of removing Cd (II) and Cu (II) ions from aqueous solutions. The characterization of these nanocomposites involved the utilization of several analytical methods, including Fourier-transform infrared spectroscopy, scanning electron microscopy, X-ray diffraction, thermal gravimetric analysis, and X-ray photoelectron spectroscopy. The efficiency of these nanocomposites was evaluated through batch mode experiments, investigating the impact of factors such as pH, initial concentration, contact time, and adsorbent dose on the adsorption of Cu(II) ions. The optimum conditions for the removal of ions were pH = 5 for Cu (II) and 6 for Cd (II), contact time: 120 min, adsorbent dosage: 0.2 g, initial metal ion concentration: 50 mg/L for each metal ion for the present study. The MgO@Pp demonstrated the highest removal efficiencies for Cu(II) and Cd(II) at 98.2% and 96.4%, respectively. In contrast, the CS@Fe-PA achieved removal efficiencies of 97.2% for Cu(II) and 89.2% for Cd(II). The modified MgO@Pp exhibited significantly higher total adsorption capacities for Cu(II) and Cd(II) at 333.3 and 200 mg/g, respectively, compared to CS@Fe-PA, which had capacities of 250 and 142 mg/g, respectively. The adsorption of Cd (II) and Cu (II) ions by MgO@Pp was found to be a spontaneous process. The R2 values obtained using the Freundlich and Redlich-Peterson models were the highest for the MgO@Pp composite, with values of 0.99, 0.988, 0.987, and 0.994, respectively, for Cu (II) and Cd (II). The pseudo-second-order equation was determined to be the best-fit kinetic model for this process. Reusability experiments confirmed that the adsorbents can be utilized for up to four regeneration cycles. Based on the findings of this study, MgO @ Pp is the most promising alternative and could be instrumental in developing strategies to address existing environmental pollution through adsorption.