bluuebunny/crossref_metadata_2025_split huggingface dataset:
miRNA-135a promotes breast cancer cell migration and invasion by targeting HOXA10
Authors: Chen Yating , Zhang Jin , Wang Huijun , Zhao Jiayi , Xu Cheng , Du Yingying , Luo Xin , Zheng Fengyun , Liu Rui , Zhang Hongwei , Ma Duan 
Published: March 2012

Abstract

Background
miRNAs are a group of small RNA molecules regulating target genes by inducing mRNA degradation or translational repression. Aberrant expression of miRNAs correlates with various cancers. Although miR-135a has been implicated in several other cancers, its role in breast cancer is unknown. HOXA10 however, is associated with multiple cancer types and was recently shown to induce p53 expression in breast cancer cells and reduce their invasive ability. Because HOXA10 is a confirmed miR-135a target in more than one tissue, we examined miR-135a levels in relation to breast cancer phenotypes to determine if miR-135a plays role in this cancer type.

Methods
Expression levels of miR-135a in tissues and cells were determined by poly (A)-RT PCR. The effect of miR-135a on proliferation was evaluated by CCK8 assay, cell migration and invasion were evaluated by transwell migration and invasion assays, and target protein expression was determined by western blotting. GFP and luciferase reporter plasmids were constructed to confirm the action of miR-135a on downstream target genes including HOXA10. Results are reported as means ± S.D. and differences were tested for significance using 2-sided Student"s t-test.

Results
Here we report that miR-135a was highly expressed in metastatic breast tumors. We found that the expression of miR-135a was required for the migration and invasion of breast cancer cells, but not their proliferation. HOXA10, which encodes a transcription factor required for embryonic development and is a metastasis suppressor in breast cancer, was shown to be a direct target of miR-135a in breast cancer cells. Our analysis showed that miR-135a suppressed the expression of HOXA10 both at the mRNA and protein level, and its ability to promote cellular migration and invasion was partially reversed by overexpression of HOXA10.

Conclusions
In summary, our results indicate that miR-135a is an onco-miRNA that can promote breast cancer cell migration and invasion. HOXA10 is a target gene for miR-135a in breast cancer cells and overexpression of HOXA10 can partially reverse the miR-135a invasive phenotype.
Mesenchymal and stemness circulating tumor cells in early breast cancer diagnosis
Authors: Barrière Guislaine , Riouallon Alain , Renaudie Joël , Tartary Michel , Rigaud Michel 
Published: March 2012

Abstract

Background
Epithelial mesenchymal transition (EMT) is a crucial event likely involved in dissemination of epithelial cancer cells. This process enables them to acquire migratory/invasive properties, contributing to tumor and metastatic spread. To know if this event is an early one in breast cancer, we developed a clinical trial. The aim of this protocol was to detect circulating tumor cells endowed with mesenchymal and/or stemness characteristics, at the time of initial diagnosis. Breast cancer patients (n = 61), without visceral or bone metastasis were enrolled and analysis of these dedifferentiated circulating tumor cells (ddCTC) was realized.

Methods

AdnaGen method was used for enrichment cell selection. Then, ddCTC were characterized by RT-PCR study of the following genes: PI3Kα, Akt-2, Twist1 (EMT markers) and ALDH1, Bmi1 and CD44 (stemness indicators).

Results
Among the studied primary breast cancer cohort, presence of ddCTC was detected in 39% of cases. This positivity is independant from tumor clinicopathological factors apart from the lymph node status.

Conclusions
Our data uniquely demonstrated that in vivo EMT occurs in the primary tumors and is associated with an enhanced ability of tumor cells to intravasate in the early phase of cancer disease. These results suggest that analysis of circulating tumor cells focused on cells showing mesenchymal or stemness characteristics might facilitate assessment of new drugs in clinical trials.
Existence of the rdl mutant alleles among the anopheles malaria vector in Indonesia
Authors: Asih Puji BS , Syahrani Lepa , Rozi Ismail EP , Pratama Nandha R , Marantina Sylvia S , Arsyad Dian S , Mangunwardoyo Wibowo , Hawley William , Laihad Ferdinand , Shinta  , Sukowati Supratman , Lobo Neil F , Syafruddin Din 
Published: March 2012

Abstract

Background
The gamma-aminobutyric acid (GABA) receptor-chloride channel complex is known to be the target site of dieldrin, a cyclodiene insecticide. GABA-receptors, with a naturally occurring amino acid substitution, A302S/G in the putative ion-channel lining region, confer resistance to cyclodiene insecticides that includes aldrin, chlordane, dieldrin, heptachlor, endrin and endosulphan.

Methods
A total of 154 mosquito samples from 10 provinces of malaria-endemic areas across Indonesia (Aceh, North Sumatra, Bangka Belitung, Lampung, Central Java, East Nusa Tenggara, West Nusa Tenggara, West Sulawesi, Molucca and North Molucca) were obtained and identified by species, using morphological characteristic. The DNA was individually extracted using chelex-ion exchanger and the DNA obtained was used for analyses using sequencing method.

Results
Molecular analysis indicated 11% of the total 154 Anopheles samples examined, carried Rdl mutant alleles. All of the alleles were found in homozygous form. Rdl 302S allele was observed in Anopheles vagus (from Central Java, Lampung, and West Nusa Tenggara), Anopheles aconitus (from Central Java), Anopheles barbirostris (from Central Java and Lampung), Anopheles sundaicus (from North Sumatra and Lampung), Anopheles nigerrimus (from North Sumatra), whereas the 302 G allele was only found in Anopheles farauti from Molucca.

Conclusion
The existence of the Rdl mutant allele indicates that, either insecticide pressure on the Anopheles population in these areas might still be ongoing (though not directly associated with the malaria control programme) or that the mutant form of the Rdl allele is relatively stable in the absence of insecticide. Nonetheless, the finding suggests that integrated pest management is warranted in malaria-endemic areas where insecticides are widely used for other purposes.
Effects of Corni fructus on ovalbumin-induced airway inflammation and airway hyper-responsiveness in a mouse model of allergic asthma
Authors: Kim Seung-Hyung , Kim Bok-Kyu , Lee Young-Cheol 
Published: March 2012

AbstractBackgroundAllergic asthma is a chronic inflammatory lung disease that is characterized by airway hyperresponsiveness (AHR) to allergens, airway oedema, increased mucus secretion, excess production of T helper-2 (Th2) cytokines, and eosinophil accumulation in the lungs. Corni fructus (CF) is a fruit ofCornus officinalisSieb. Et. Zucc. (Cornaceae) and has been used in traditional Korean medicine as an anti-inflammatory, analgesic, and diuretic agent. To investigate the anti-asthmatic effects of CF and their underlying mechanism, we examined the influence of CF on the development of pulmonary eosinophilic inflammation and airway hyperresponsiveness in a mouse model of allergic asthma.MethodsIn this study, BALB/c mice were systemically sensitized to ovalbumin (OVA) by intraperitoneal (i.p.), intratracheal (i.t.) injections and intranasal (i.n.) inhalation of OVA. We investigated the effect of CF on airway hyperresponsiveness, pulmonary eosinophilic infiltration, various immune cell phenotypes, Th2 cytokine production, and OVA-specific immunoglobulin E (IgE) production.ResultsThe CF-treated groups showed suppressed eosinophil infiltration, allergic airway inflammation, and AHR via reduced production of interleuin (IL) -5, IL-13, and OVA-specific IgE.ConclusionsOur data suggest that the therapeutic effects of CF in asthma are mediated by reduced production of Th2 cytokines (IL-5), eotaxin, and OVA-specific IgE and reduced eosinophil infiltration.
Emv2, the only endogenous ecotropic murine leukemia virus of C57BL/6J mice
Authors: Young George R , Kassiotis George , Stoye Jonathan P 
Published: March 2012

Abstract
With the proliferation of sequence data, great challenges are posed in the correct annotation of endogenous retroviruses, which together comprise up to ten per cent of the genomes of many organisms. It is therefore essential that all sources of information are carefully considered before drawing conclusions concerning the phylogeny, distribution and biological properties of endogenous retroviruses. We suggest that such due diligence has not been applied in the description of an endogenous ecotropic retrovirus that recently appeared in Retrovirology.
Xylem sap collection and extraction methodologies to determine in vivo concentrations of ABA and its bound forms by gas chromatography-mass spectrometry (GC-MS)
Authors: Netting Andrew G , Theobald Julian C , Dodd Ian C 
Published: March 2012

Abstract

Background
Accurate quantification of xylem sap ABA concentrations is important to underpin models of root-to-shoot ABA signalling to predict the physiological effects of soil drying. Growing tomato plants in a whole plant pressure chamber allowed sequential xylem sap collection from a detached leaf, the petiole stub of an otherwise intact plant and finally the de-topped root system of the same plant, to determine the impact of xylem sap sampling methodology on xylem ABA concentration. Since xylem sap can contain bound forms of ABA, a novel gas chromatography-mass spectrometry (GC-MS) procedure was developed to chemically separate free ABA from two in planta bound ABA forms known as Adducts I and II and ABA-glucose-ester (ABA-GE).

Results
Xylem sap ABA concentrations were highly dependent on the sampling methodology used: the highest concentrations were detected in sap collected by applying an overpressure to detached leaves following the measurement of leaf water potential. Irrespective of xylem sap source, the wild-type cultivars Ailsa Craig and Rheinlands Ruhm had higher free ABA concentrations than a range of ABA-deficient mutants (notabilis, flacca and sitiens). However, in the mutants, concentrations of bound forms of ABA were similar to wild-type plants, and similar to free ABA concentrations.

Conclusions
Although xylem concentrations of these bound ABA forms and ABA-GE suggest they have a limited physiological impact on ABA homeostasis in tomato, the methods developed here will allow a more complete understanding of ABA biochemistry and root-to-shoot signalling in species known to have higher concentrations of these compounds.
Combined analysis of mRNA expression of ERCC1, BAG-1, BRCA1, RRM1 and TUBB3 to predict prognosis in patients with non-small cell lung cancer who received adjuvant chemotherapy
Authors: Leng Xue-Feng , Chen Ming-Wu , Xian Lei , Dai Lei , Ma Guang-Yao , Li Man-Hong 
Published: March 2012

Abstract

Background
The aim of this study was to investigate prognostic value of excision repair cross-complementing 1 (ERCC1), BCL2-associated athanogene (BAG-1), the breast and ovarian cancer susceptibility gene 1 (BRCA1), ribonucleotide reductase subunit M1 (RRM1) and class III β-tubulin (TUBB3) in patients with non-small cell lung cancer (NSCLC) who received platinum- based adjuvant chemotherapy.

Methods
Messenger RNA expressions of these genes were examined in 85 tumor tissues and 34 adjacent tissue samples using semi-quantitative RT-PCR. The expressions of these five genes were analyzed in relation to chemotherapy and progression-free survival (PFS) and overall survival (OS). Seventy-four patients were enrolled into chemotherapy.

Results
Patients with ERCC1 or BAG-1 negative expression had a significantly longer PFS (P = 0.001 and P = 0.001) and OS (P = 0.001 and P = 0.001) than those with positive expression. Patients with negative ERCC1 and BAG-1 expression benefited more from platinum regimen (P = 0.001 and P = 0.002). Patients with BRCA1 negative expression might have a longer OS (P = 0.052), but not PFS (P = 0.088) than those with BRCA1 positive expression. A significant relationship was observed between the mRNA expression of ERCC1 and BAG-1 (P = 0.042). In multivariate analysis, ERCC1 and BAG-1 were significantly favorable factors for PFS (P = 0.018 and P = 0.017) and OS (P = 0.027 and P = 0.022).

Conclusions
ERCC1 and BAG-1 are determinants of survival after surgical treatment of NSCLC, and its mRNA expression in tumor tissues could be used to predict the prognosis of NSCLC treated by platinum.
Squelching of ETS2 Transactivation by POU5F1 Silences the Human Chorionic Gonadotropin CGA Subunit Gene in Human Choriocarcinoma and Embryonic Stem Cells
Authors: Gupta Rangan , Ezashi Toshihiko , Roberts R. Michael 
Published: March 2012

AbstractThe subunit genes encoding human chorionic gonadotropin, CGA, and CGB, are up-regulated in human trophoblast. However, they are effectively silenced in choriocarcinoma cells by ectopically expressed POU domain class 5 transcription factor 1 (POU5F1). Here we show that POU5F1 represses activity of the CGA promoter through its interactions with ETS2, a transcription factor required for both placental development and human chorionic gonadotropin subunit gene expression, by forming a complex that precludes ETS2 from interacting with the CGA promoter. Mutation of a POU5F1 binding site proximal to the ETS2 binding site does not alter the ability of POU5F1 to act as a repressor but causes a drop in basal promoter activity due to overlap with the binding site for DLX3. DLX3 has only a modest ability to raise basal CGA promoter activity, but its coexpression with ETS2 can up-regulate it 100-fold or more. The two factors form a complex, and both must bind to the promoter for the combination to be transcriptionally effective, a synergy compromised by POU5F1. Similarly, in human embryonic stem cells, which express ETS2 but not CGA, ETS2 does not occupy its binding site on the CGA promoter but is found instead as a soluble complex with POU5F1. When human embryonic stem cells differentiate in response to bone morphogenetic protein-4 and concentrations of POU5F1 fall and hCG and DLX3 rise, ETS2 then occupies its binding site on the CGA promoter. Hence, a squelching mechanism underpins the transcriptional silencing of CGA by POU5F1 and could have general relevance to how pluripotency is maintained and how the trophoblast lineage emerges from pluripotent precursor cells.
MULTIPHYSICS MODELING OF IONIC GEL ACTUATORS
Authors: Li Huibiao , Li Meie , Zhou Jinxiong 
Published: March 2012

ABSTRACTWhen an electrocatalyst, platinum, was coated on ionic-polymer gel surfaces and was immersed into an acidic formaldehyde solution, an input dc current will produce oscillatory ac on the surfaces of the ionic-polymer-metal-composites(IPMC), which eventually causes self-oscillatory bending of the actuators. Typical IPMC actuators have a large length-to-height ratio, exhibiting large deformation during bending and relaxation processes. A multiphysics modeling of self-oscillations of IPMC actuator was carried out, incorporating the electrochemical oscillations, electrokinetics, electrostatics and nonlinear large deformation of the actuators.
The transition to explosive solitons and the destruction of invariant tori
Authors: Cisternas Jaime , Descalzi Orazio , Cartes Carlos 
Published: March 2012

AbstractWe investigate the transition to explosive dissipative solitons and the destruction of invariant tori in the complex cubic-quintic Ginzburg-Landau equation in the regime of anomalous linear dispersion as a function of the distance from linear onset. Using Poncaré sections, we sequentially find fixed points, quasiperiodicity (two incommesurate frequencies), frequency locking, two torus-doubling bifurcations (from a torus to a 2-fold torus and from a 2-fold torus to a 4-fold torus), the destruction of a 4-fold torus leading to non-explosive chaos, and finally explosive solitons. A narrow window, in which a 3-fold torus appears, is also observed inside the chaotic region.
Multistage morphological segmentation of bright-field and fluorescent microscopy images
Authors: Korzyńska A. , Iwanowski M. 
Published: March 2012

AbstractThis paper describes the multistage morphological segmentation method (MSMA) for microscopic cell images. The proposed method enables us to study the cell behaviour by using a sequence of two types of microscopic images: bright field images and/or fluorescent images. The proposed method is based on two types of information: the cell texture coming from the bright field images and intensity of light emission, done by fluorescent markers. The method is dedicated to the image sequences segmentation and it is based on mathematical morphology methods supported by other image processing techniques. The method allows for detecting cells in image independently from a degree of their flattening and from presenting structures which produce the texture. It makes use of some synergic information from the fluorescent light emission image as the support information. The MSMA method has been applied to images acquired during the experiments on neural stem cells as well as to artificial images. In order to validate the method, two types of errors have been considered: the error of cell area detection and the error of cell position using artificial images as the “gold standard”.
Nonlinear model predictive control of a boiler unit: A fault tolerant control study
Authors: Patan Krzysztof , Korbicz Józef 
Published: March 2012

Nonlinear model predictive control of a boiler unit: A fault tolerant control studyThis paper deals with a nonlinear model predictive control designed for a boiler unit. The predictive controller is realized by means of a recurrent neural network which acts as a one-step ahead predictor. Then, based on the neural predictor, the control law is derived solving an optimization problem. Fault tolerant properties of the proposed control system are also investigated. A set of eight faulty scenarios is prepared to verify the quality of the fault tolerant control. Based of different faulty situations, a fault compensation problem is also investigated. As the automatic control system can hide faults from being observed, the control system is equipped with a fault detection block. The fault detection module designed using the one-step ahead predictor and constant thresholds informs the user about any abnormal behaviour of the system even in the cases when faults are quickly and reliably compensated by the predictive controller.
A Model of agglomerate formation during bed wetting in the process of disc granulation
Authors: Obraniak Andrzej , Gluba Tadeusz 
Published: March 2012

A Model of agglomerate formation during bed wetting in the process of disc granulation
This paper presents a method for quantitative assessment of the mechanisms of nucleation and granules growth by layering in the process of bed wetting during periodic disc granulation. This study included two initial, consecutive stages of a process with defined time courses. The first phase was a time period, in which only formation of new nuclei took place, while in the second stage simultaneous nucleation and growth of granules as a result of sticking raw material grains to pre-existing nuclei occurred. Different kinds of binding liquid were used for bed wetting in each phase. In the first phase, an aqueous solution of dye was used, and pure distilled water in the second stage. The contribution of particular mechanisms to the formation of agglomerates at different time points within the second phase of the process was determined in this study. To do that the results of bed granulometric analysis, mass balance of size fractions and the analysis of contents of a marker (dye) delivered to the bed with the binding liquid during the first phase in agglomerates were used. To assess the concentration of the dye in different size fractions of the batch, spectrophotometric analysis was utilised. The study was performed using UV-VIS JASCO V-630 spectrophotometer equipped with an integrating sphere. The sieve analysis, spectrophotometric studies and mass balance were used to determine changes in the weight of the dye containing nuclei and of the nuclei containing no dye. The aforementioned analyses were also used to assess changes in the weight of formed granules and of raw material particles attached to nuclei during simultaneous nucleation and growth of granules.
Hyperacute cerebral aneurysm rerupture during CT angiography
Authors: Tsuang Fon-Yih , Su I-Chang , Chen Jo-Yu , Lee Jing-Er , Lai Dar-Ming , Tu Yong-Kwang , Wang Kuo-Chuan 
Published: March 2012

Object
The object of this study was to identify the clinical features and outcomes of a subgroup of patients with aneurysmal subarachnoid hemorrhage (SAH) who had active contrast extravasation from a ruptured aneurysm during initial cerebral CT angiography (CTA).

Methods
The authors performed a retrospective study of spontaneous SAH cases involving patients treated at their institute. They identified 9 cases in which active contrast extravasation was evident on the initial CT angiogram. Another 12 similar cases were also identified in a literature review and data was gathered from these cases to evaluate the outcomes.

Results
Analysis of all 21 cases revealed that the overall outcomes in cases characterized by active aneurysmal bleeding during CTA were poor. Seventy-six percent of patients had unfavorable results. Patients who showed poor neurological status at presentation died no matter what kind of treatment they received. In contrast, patients who presented with good neurological status initially had a chance of favorable outcome. Among the patients with good initial neurological status, most demonstrated rapid deterioration of their condition during the CTA examination; only those who received immediate and effective decompressive surgery and aneurysm obliteration had good results.

Conclusions
Active aneurysmal rebleeding during CTA is an uncommon but devastating event. Though the mortality of this distinct group of patients remains high, a clinical subgroup may benefit from immediate surgery. Patients with good initial neurological status who show rapid neurological deterioration may still have a favorable outcome if they undergo timely and successful decompressive surgery and proper aneurysm obliteration. Patients who present with poor neurological status do badly, and there is no effective treatment for such patients.
New species of Gymnocarena (Diptera: Tephritidae) from eastern North America and Guatemala, and the redescription of G. mississippiensis
Authors: Sutton Bruce D. , Steck Gary J. , Norrbom Allen L. 
Published: March 2012

AbstractWe describe three new species of fruit flies (Tephritidae: Tephritinae) (Gymnocarena defoeisp. nov. and Gymnocarenanorrbomisp. nov., from eastern North America and Gymnocarena monzonisp. nov. from Guatemala) and redescribe Gymnocarena mississippiensis Norrbom. Gymnocarena monzoni is the first Gymnocarena species to be recorded from Guatemala. This brings the total number of named species in this genus to 19. New larval host plant (Asteraceae) records for Gymnocarena include Verbesina helianthoides Michx. for G. mississippiensis and G. norrbomi, Verbesinaalternifolia (L.) Britton ex Kearney for G. norrbomi, and Viguiera cordata (Hook. and Arn.) D'Arcy for G. monzoni. The latter represents the first record for Gymnocarena in Viguiera Kunth. Gymnocarena larvae were also recorded from Verbesina virginica L. but not identified to species. A revised key to the known species of Gymnocarena and additional information on larval host plants and biology are provided.