bluuebunny/crossref_metadata_2025_split huggingface dataset:
Luminescence of mesoporous silicon powders treated by high-pressure water vapor annealing
Authors: Gelloz Bernard , Loni Armando , Canham Leigh , Koshida Nobuyoshi 
Published: July 2012

Abstract
We have studied the photoluminescence of nanocrystalline silicon microparticle powders fabricated by fragmentation of PSi membranes. Several porosities were studied. Some powders have been subjected to further chemical etching in HF in order to reduce the size of the silicon skeleton and reach quantum sizes. High-pressure water vapor annealing was then used to enhance both the luminescence efficiency and stability. Two visible emission bands were observed. A red band characteristic of the emission of Si nanocrystals and a blue band related to localized centers in oxidized powders. The blue band included a long-lived component, with a lifetime exceeding 1 sec. Both emission bands depended strongly on the PSi initial porosity. The colors of the processed powders were tunable from brown to off-white, depending on the level of oxidation. The surface area and pore volume of some powders were also measured and discussed. The targeted applications are in cosmetics and medicine.
The ambiguity function associated with the linear canonical transform
Authors: Tian-Wen Che , Bing-Zhao Li , Tian-Zhou Xu 
Published: July 2012

AbstractA new kind of ambiguity function (AF) associated with the linearcanonical transform (LCT) is proposed in this article, this new AF is defined based on the LCT and the classical AF. Firstly, the main properties and physical meanings of the newly defined AF are investigated, the results show that this kind of AF can be seen as one generalization of the classical AF. Then, the newly defined AF is applied to detect the parameters of the linear frequency modulated signals by combining with the classical Radon transform. The simulations are performed to verify the correctness of the derived results, and the comparison of the derived results with the common time-frequency analysis tools are also discussed.
Distribution of extrahepatic congenital portosystemic shunt morphology in predisposed dog breeds
Authors: Van den Bossche Lindsay , van Steenbeek Frank G , Favier Robert P , Kummeling Anne , Leegwater Peter AJ , Rothuizen Jan 
Published: July 2012

AbstractBackgroundAn inherited basis for congenital extrahepatic portosystemic shunts (EHPSS) has been demonstrated in several small dog breeds. If in general both portocaval and porto-azygous shunts occur in breeds predisposed to portosystemic shunts then this could indicate a common genetic background. This study was performed to determine the distribution of extrahepatic portocaval and porto-azygous shunts in purebred dog populations.ResultsData of 135 client owned dogs diagnosed with EHPSS at the Faculty of Veterinary Medicine of Utrecht University from 2001 – 2010 were retrospectively analyzed. The correlation between shunt localization, sex, age, dog size and breed were studied. The study group consisted of 54 males and 81 females from 24 breeds. Twenty-five percent of dogs had porto-azygous shunts and 75% had portocaval shunts. Of the dogs with porto-azygous shunts only 27% was male (P = 0.006). No significant sex difference was detected in dogs with a portocaval shunt. Both phenotypes were present in almost all breeds represented with more than six cases. Small dogs are mostly diagnosed with portocaval shunts (79%) whereas both types are detected. The age at diagnosis in dogs with porto-azygous shunts was significantly higher than that of dogs with portocaval shunts (P < 0.001).ConclusionThe remarkable similarity of phenotypic variation in many dog breeds may indicate common underlying genes responsible for EHPSS across breeds. The subtype of EHPSS could be determined by a minor genetic component or modulating factors during embryonic development.
Outbreaks of highly pathogenic porcine reproductive and respiratory syndrome in Jiangxi province, China
Authors: Guo Aijiang , Wu Guohua , Gong Wei , Luo Xuenong , Zheng Haixue , Jia Huanjie , Cai Xuepeng 
Published: July 2012

Abstract
In 2007, herds of pigs in Jiangxi Province, China experienced outbreaks of a severe form of suspected porcine reproductive and respiratory syndrome (PRRS) characterized by high fever, high morbidity and mortality in animals of different ages. 152 swine sera and 42 tissues (consisting of liver, lung, lymph node and kidney) from five herds of pigs were collected. Pigs were diagnosed as infected with a highly pathogenic form of the PRRS virus (PRRSV) based on ELISA and reverse transcriptase polymerase chain reaction (RT-PCR) results. Serological surveys indicated that 67-100% of the examined pig herds in Jiangxi Province were seropositive. 42 tissue samples were used to detect classical swine fever virus, porcine circovirus type 2 and PRRSV. Results indicated that only PRRSV was detected in 42 samples. 12 PRRSV amplified products of five herds, which consisted of two or three samples randomly selected from each herd, were used for sequencing. Subsequent nucleotide sequencing showed that the NSP2 gene had 99–99.7% nucleotide and 99.2–100% derived amino acid sequence identities among 12 tissues with that of the PRRS-JXA1 strain, deletions of 29 amino acids corresponded to positions 534–562 of the NSP2 gene sequence. These results revealed that the diseased pigs were all caused by fatal PRRSV variant. Compared with the same period in 2006, the number of positive cases from Jiangxi Province remained unchanged. These findings demonstrated that the highly pathogenic Northern American type PRRSV was still spreading in Jiangxi Province, China in 2007.
Systematic reviews on behavioural and psychological symptoms in the older or demented population
Authors: van der Linde Rianne M , Stephan Blossom CM , Savva George M , Dening Tom , Brayne Carol 
Published: July 2012

Abstract
Introduction
Behavioural and psychological symptoms of dementia (BPS) include depressive symptoms, anxiety, apathy, sleep problems, irritability, psychosis, wandering, elation and agitation, and are common in the non-demented and demented population.

Methods
We have undertaken a systematic review of reviews to give a broad overview of the prevalence, course, biological and psychosocial associations, care and outcomes of BPS in the older or demented population, and highlight limitations and gaps in existing research. Embase and Medline were searched for systematic reviews using search terms for BPS, dementia and ageing.

Results
Thirty-six reviews were identified. Most investigated the prevalence or course of symptoms, while few reviewed the effects of BPS on outcomes and care. BPS were found to occur in non-demented, cognitively impaired and demented people, but reported estimates vary widely. Biological factors associated with BPS in dementia include genetic factors, homocysteine levels and vascular changes. Psychosocial factors increase risk of BPS; however, across studies and between symptoms findings are inconsistent. BPS have been associated with burden of care, caregiver's general health and caregiver depression scores, but findings are limited regarding institutionalisation, quality of life and disease outcome.

Conclusions
Limitations of reviews include a lack of high quality reviews, particularly of BPS other than depression. Limitations of original studies include heterogeneity in study design particularly related to measurement of BPS, level of cognitive impairment, population characteristics and participant recruitment. It is our recommendation that more high quality reviews, including all BPS, and longitudinal studies with larger sample sizes that use frequently cited instruments to measure BPS are undertaken. A better understanding of the risk factors and course of BPS will inform prevention, treatment and management and possibly improve quality of life for the patients and their carers.
Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
Authors: Liu Yaping , Siegmund Kimberly D , Laird Peter W , Berman Benjamin P 
Published: July 2012

AbstractBisulfite treatment of DNA followed by high-throughput sequencing (Bisulfite-seq) is an important method for studying DNA methylation and epigenetic gene regulation, yet current software tools do not adequately address single nucleotide polymorphisms (SNPs). Identifying SNPs is important for accurate quantification of methylation levels and for identification of allele-specific epigenetic events such as imprinting. We have developed a model-based bisulfite SNP caller, Bis-SNP, that results in substantially better SNP calls than existing methods, thereby improving methylation estimates. At an average 30× genomic coverage, Bis-SNP correctly identified 96% of SNPs using the default high-stringency settings. The open-source package is available at http://epigenome.usc.edu/publicationdata/bissnp2011.
Functional implications of morphological specializations among the pectoral fin rays of the benthic longhorn sculpin
Authors: Taft Natalia K. , Taft Benjamin N. 
Published: July 2012

SUMMARY
Fin ray structure in ray-finned fishes (Actinopterygii) largely defines fin function. Fin rays convert the muscle activity at the base of the fin to shape changes throughout the external fin web. Despite their critical functional significance, very little is known about the relationship between form and function in this key vertebrate structure. In this study we demonstrate that morphological specializations of the pectoral fin rays of the benthic longhorn sculpin (Myoxocephalus octodecimspinosus) have specific functional consequences both within and among individual rays. The fin rays of longhorn sculpin have an elongate unjointed region with a cylindrical shape in cross-section proximally, and are jointed with a crescent-shaped cross-section distally. Variation in the relative length of the proximal versus distal regions affects the location of maximum curvature as well as the mean curvature along the length of individual rays. We experimentally manipulated fin rays to mimic the differential muscle activity that generates curvature of fin rays in living animals. We found that the shape of the fin rays in cross-section affects their curvature. Among fin rays, the most ventral fin rays with relatively longer proximal unjointed regions have a more distal location of maximum curvature. These ventral rays also have higher mean curvature, likely because of a combination of features including the cross-sectional shape, area and diameter of the distal segments as well as their relative size and number, which were not examined in detail here. Because these rays are used routinely for substrate contact, this higher curvature could contribute to increased flexibility for substrate contact behaviors such as clinging or gripping the substrate. These morphological and functional differences among fin rays are correlated with the functional regionalization of the fin. Specifically, the ventral fin rays that are used during substrate contact are more stiff proximally and more highly curved distally than the pectoral rays in the dorsal region, which are longer and used during slow swimming. This study highlights the importance of examining morphological and functional variation both within and among complex structures such as fin rays.
Reconfiguration and the reduction of vortex-induced vibrations in broad leaves
Authors: Miller Laura A. , Santhanakrishnan Arvind , Jones Shannon , Hamlet Christina , Mertens Keith , Zhu Luoding 
Published: July 2012

SUMMARYFlexible plants, fungi and sessile animals reconfigure in wind and water to reduce the drag acting upon them. In strong winds and flood waters, for example, leaves roll up into cone shapes that reduce drag compared with rigid objects of similar surface area. Less understood is how a leaf attached to a flexible leaf stalk will roll up stably in an unsteady flow. Previous mathematical and physical models have only considered the case of a flexible sheet attached to a rigid tether in steady flow. In this paper, the dynamics of the flow around the leaf of the wild ginger Hexastylis arifolia and the wild violet Viola papilionacea are described using particle image velocimetry. The flows around the leaves are compared with those of simplified physical and numerical models of flexible sheets attached to both rigid and flexible beams. In the actual leaf, a stable recirculation zone is formed within the wake of the reconfigured cone. In the physical model, a similar recirculation zone is observed within sheets constructed to roll up into cones with both rigid and flexible tethers. Numerical simulations and experiments show that flexible rectangular sheets that reconfigure into U-shapes, however, are less stable when attached to flexible tethers. In these cases, larger forces and oscillations due to strong vortex shedding are measured. These results suggest that the three-dimensional cone structure in addition to flexibility is significant to both the reduction of vortex-induced vibrations and the forces experienced by the leaf.
The effects of three-dimensional gap orientation on bridging performance and behavior of brown tree snakes (Boiga irregularis)
Authors: Byrnes Greg , Jayne Bruce C. 
Published: July 2012

SUMMARYTraversing gaps with different orientations within arboreal environments has ecological relevance and mechanical consequences for animals. For example, the orientation of the animal while crossing gaps determines whether the torques acting on the body tend to cause it to pitch or roll from the supporting perch or fail as a result of localized bending. The elongate bodies of snakes seem well suited for crossing gaps, but a long unsupported portion of the body can create large torques that make gap bridging demanding. We tested whether the three-dimensional orientation of substrates across a gap affected the performance and behavior of an arboreal snake (Boiga irregularis). The snakes crossed gaps 65% larger for vertical than for horizontal trajectories and 13% greater for straight trajectories than for those with a 90 deg turn within the horizontal plane. Our results suggest that failure due to the inability to keep the body rigid at the edge of the gap may be the primary constraint on performance for gaps with a large horizontal component. In addition, the decreased performance when the destination perch was oriented at an angle to the long axis of the initial perch was probably a result of the inability of snakes to maintain balance due to the large rolling torque. For some very large gaps the snakes enhanced their performance by using rapid lunges to cross otherwise impassable gaps. Perhaps such dynamic movements preceded the aerial behavior observed in other species of arboreal snakes.
Sensory receptor diversity establishes a peripheral population code for stimulus duration at low intensities
Authors: Lyons-Warren Ariel M. , Hollmann Michael , Carlson Bruce A. 
Published: July 2012

SUMMARYPeripheral filtering is a fundamental mechanism for establishing frequency tuning in sensory systems. By contrast, detection of temporal features, such as duration, is generally thought to result from temporal coding in the periphery, followed by an analysis of peripheral response times within the central nervous system. We investigated how peripheral filtering properties affect the coding of stimulus duration in the electrosensory system of mormyrid fishes using behavioral and electrophysiological measures of duration tuning. We recorded from individual knollenorgans, the electrosensory receptors that mediate communication, and found correlated variation in frequency tuning and duration tuning, as predicted by a simple circuit model. In response to relatively high intensity stimuli, knollenorgans responded reliably with fixed latency spikes, consistent with a temporal code for stimulus duration. At near-threshold intensities, however, both the reliability and the temporal precision of responses decreased. Evoked potential recordings from the midbrain, as well as behavioral responses to electrosensory stimulation, revealed changes in sensitivity across the range of durations associated with the greatest variability in receptor sensitivity. Further, this range overlapped with the natural range of variation in species-specific communication signals, suggesting that peripheral duration tuning affects the coding of behaviorally relevant stimuli. We measured knollenorgan, midbrain and behavioral responses to natural communication signals and found that each of them were duration dependent. We conclude that at relatively low intensities for which temporal coding is ineffective, diversity among sensory receptors establishes a population code, in which duration is reflected in the population of responding knollenorgans.
Sensitivity and specificity of the olfactory epithelia of two elasmobranch species to bile salts
Authors: Meredith Tricia L. , Caprio John , Kajiura Stephen M. 
Published: July 2012

SUMMARY
Odor detection in vertebrates occurs when odorants enter the nose and bind to molecular olfactory receptors on the cilia or microvilli of olfactory receptor neurons (ORNs). Several vertebrate groups possess multiple, morphologically distinct types of ORNs. In teleost fishes, these different ORN types detect specific classes of biologically relevant odorants, such as amino acids, nucleotides and bile salts. For example, bile salts are reported to be detected exclusively by ciliated ORNs. The olfactory epithelium of elasmobranch fishes (sharks, rays and skates) is comprised of microvillous and crypt ORNs, but lacks ciliated ORNs; thus, it was questioned whether the olfactory system of this group of fishes is capable of detecting bile salts. The present investigation clearly indicates that the olfactory system of representative shark and stingray species does detect and respond to bile salts. Additionally, these species detect glycine-conjugated, taurine-conjugated and non-conjugated bile salts, as do teleosts. These elasmobranchs are less sensitive to the tested bile salts than reported for both agnathans and teleosts, but this may be due to the particular bile salts selected in this study, as elasmobranch-produced bile salts are commercially unavailable. Cross-adaptation experiments indicate further that the responses to bile salts are independent of those to amino acids, a major class of odorant molecules for all tested fishes.
Regulation of metabolism by dietary carbohydrates in two lines of rainbow trout divergently selected for muscle fat content
Authors: Kamalam Biju Sam , Medale Françoise , Kaushik Sadasivam , Polakof Sergio , Skiba-Cassy Sandrine , Panserat Stephane 
Published: July 2012

SUMMARY
Previous studies in two rainbow trout lines divergently selected for lean (L) or fat (F) muscle suggested that they differ in their ability to metabolise glucose. In this context, we investigated whether genetic selection for high muscle fat content led to a better capacity to metabolise dietary carbohydrates. Juvenile trout from the two lines were fed diets with or without gelatinised starch (17.1%) for 10 weeks, after which blood, liver, muscle and adipose tissues were sampled. Growth rate, feed efficiency and protein utilisation were lower in the F line than in the L line. In both lines, intake of carbohydrates was associated with a moderate post-prandial hyperglycaemia, a protein sparing effect, an enhancement of nutrient (TOR-S6) signalling cascade and a decrease of energy-sensing enzyme (AMPK). Gene expression of hepatic glycolytic enzymes was higher in the F line fed carbohydrates compared with the L line, but concurrently transcripts for the gluconeogenic enzymes was also higher in the F line, possibly impairing glucose homeostasis. However, the F line showed a higher gene expression of hepatic enzymes involved in lipogenesis and fatty acid bioconversion, in particular with an increased dietary carbohydrate intake. Enhanced lipogenic potential coupled with higher liver glycogen content in the F line suggests better glucose storage ability than the L line. Overall, the present study demonstrates the changes in hepatic intermediary metabolism resulting from genetic selection for high muscle fat content and dietary carbohydrate intake without, however, any interaction for an improved growth or glucose utilisation in the peripheral tissues.
Evaluation of Medication-Related Problems in Medication Reviews: A Comparative Perspective
Authors: Kaur Sukhpreet , Roberts Jason A , Roberts Michael S 
Published: July 2012

BACKGROUND: The elderly population is at a high risk of medication misadventure, with many studies reporting a high number of medication-related problems (MRPs) in this group. OBJECTIVE: To quantify MRPs in residential facilities routinely reviewed by pharmacists and compare these results with other published findings. METHODS: This cross-sectional study included deidentified residents' health and medication data from 6 aged-care facilities. Regular medication reviews had been conducted over 20 years in these facilities. Two hundred ninety-six pharmacist intervention report forms were completed by 3 accredited clinical pharmacists over a 2-year period. These data were then used as a baseline in analyzing other published data for residential aged-care facilities and for patients at home. RESULTS: A total of 802 (range 0-12 per review) MRPs were identified in patients who were prescribed 2-29 medicines per patient, with a mean of 2.7 MRPs per review (95% CI 2.43 to 2.98). An analysis of the literature showed that the length of treatment, inclusion criteria used, and the definition of MRPs greatly affected the results obtained. However, application of the different inclusion criteria used in other published studies to our data resulted in findings similar to the published Australian average for residents of aged-care facilities and patients living independently at home (3.9 and 4.8 MRPs per patient, respectively). CONCLUSIONS: All medicines can potentially lead to MRPs. MRPs identified during pharmacist medication reviews vary widely between studies but can be normalized by inclusion criteria, length of stay, and the nature of the identified problem. It is recommended that a minimum benchmark for best practice in a patient population receiving at least yearly reviews be less than 3 MRPs per patient. Higher benchmarks of 4 MRPs per patient should apply when the patient population is restricted to include those receiving more than 9 medications and with more than 2 MRPs.
Hemopericardium and Cardiac Tamponade Associated with Dabigatran Use
Authors: Dy Eliza A , Shiltz Dane L 
Published: July 2012

OBJECTIVE: To describe 2 cases of hemopericardium following treatment with dabigatran. CASE SUMMARIES: A 70-year-old male with a history of dabigatran use presented with cough, fatigue, and bloody stools. The patient had a large hyperdense pericardial effusion caused by accumulation of bloody fluid, leading to hypotension and shock. Approximately 1000 mL of hemorrhagic fluid was drained from the pericardial space. A 77-year-old female was admitted for treatment of pneumonia and atrial fibrillation. Dabigatran was initiated and, after 6 doses, the patient developed abdominal pain, respiratory distress, and shock. She was diagnosed with pericardial effusion leading to cardiac tamponade. Pericardiocentesis and thoracentesis procedures removed a cumulative total of 2000 mL of bloody fluid. DISCUSSION: Dabigatran is an oral direct thrombin inhibitor approved for the reduction of stroke and systemic embolism risk in patients with nonvalvular atrial fibrillation. In December 2011, the Food and Drug Administration released a statement describing serious bleeding events associated with dabigatran use. According to the Naranjo scale, the cases presented here had probable associations between hemopericardium and dabigatran. While there is no known literature supporting this relationship, there are documented cases of warfarin-induced hemopericardium. CONCLUSIONS: These case reports highlight the potential for dabigatran to cause hemopericardium and cardiac tamponade. Additional reports may better elucidate (or characterize) the risk of dabigatran-induced hemopericardium and cardiac tamponade.