bluuebunny/crossref_metadata_2025_split huggingface dataset:
Rescue of recombinant peste des petits ruminants virus: creation of a GFP-expressing virus and application in rapid virus neutralization test
Authors: Hu Qianqian , Chen Weiye , Huang Kehe , Baron Michael D , Bu Zhigao 
Published: June 2012

AbstractPeste des petits ruminants virus (PPRV) causes high mortality in goats and sheep and the disease has shown a greatly increased geographic distribution over the last 15 years. It is responsible for serious socioeconomic problems in some of the poorest developing countries. The ability to create recombinant PPRV would provide a useful tool for investigating the biology of the virus and the pathology of disease, as well as for developing new vaccines and diagnostic methods. Here we report the first successful rescue of recombinant PPRV from a full-length cDNA clone of the virus genome. Successful recovery of PPRV was achieved by using a RNA polymerase II promoter to drive transcription of the full-length virus antigenome. We have used this technique to construct a virus expressing a tracer protein (green fluorescent protein, GFP). The recombinant virus replicated as well as the parental virus and could stably express GFP during at least 10 passages. The newly established reverse genetics system for PPRV provides a novel method for constructing a vaccine using PPRV as a vector, and will also prove valuable for fundamental research on the biology of the virus. We found that our recombinant virus allowed more rapid and higher throughput assessment of PPRV neutralization antibody titer via the virus neutralization test (VNT) compared with the traditional method.
Total and individual antioxidant intake and risk of epithelial ovarian cancer
Authors: Gifkins Dina , Olson Sara H , Paddock Lisa , King Melony , Demissie Kitaw , Lu Shou-En , Kong Ah-Ng Tony , Rodriguez-Rodriguez Lorna , Bandera Elisa V 
Published: June 2012

AbstractBackgroundLimiting oxidative stress to the ovarian epithelium has been proposed as a first-line defense against ovarian cancer. Although evidence for an association between individual dietary antioxidant intake and ovarian cancer risk is conflicting, the combined evidence suggests a modest inverse association. Our study aimed to evaluate the association between total antioxidant capacity (TAC) and individual antioxidant intakes (vitamin C, vitamin E, beta-carotene, selenium, lutein, and lycopene) and ovarian cancer risk.MethodsWe conducted a population-based case–control study in New Jersey. Cases were women ages 21 years and older with newly diagnosed epithelial ovarian cancer who resided in six counties of New Jersey. Controls were women in the same age range who resided in the same geographic area. A total of 205 ovarian cancer cases and 390 controls were included. Dietary intake was ascertained using the Block food frequency questionnaire (FFQ), and TAC indices were constructed by linking FFQ-derived estimates to two standardized antioxidant capacity databases, the USDA Oxygen Radical Absorbance Capacity (ORAC) Database, and the University of Olso’s Antioxidant Food Database. Multivariate logistic regression models were used to calculate odds ratios and 95 % confidence intervals while controlling for major ovarian cancer risk factors.ResultsWe found a strong inverse association with selenium from food sources (OR: 0.41; 95 % CI: 0.20-0.85, for the highest vs. lowest tertile of dietary selenium intake). However, there was little evidence of an association with dietary TAC or the others individual antioxidants. In contrast, compared to non-users, supplement users had significant increased risk for all micronutrients, but no statistically significant increased risk was observed for combined intake from foods and supplements of any of these antioxidants.ConclusionsThis study found an inverse association between selenium consumption from food sources and ovarian cancer risk, while there was little evidence of an association with TAC or any of the other individual antioxidants. Additional research is needed to confirm these findings.
Fatty acid profile and proliferation of bovine blood mononuclear cells after conjugated linoleic acid supplementation
Authors: Renner Lydia , Pappritz Julia , Kramer Ronny , Kersten Susanne , Jahreis Gerhard , Dänicke Sven 
Published: June 2012

Abstract

Background
Conjugated linoleic acids (CLA) are in focus of dairy cattle research because of its milk fat reducing effects. Little is known about the impact of CLA on immune function in dairy cows. Therefore, in the present study we investigated the effects of a long term supplementation of dairy cows with CLA on the fatty acid profile of peripheral blood mononuclear cells (PBMC) and their proliferation ex vivo.

Results
The supplementation of dairy cows with either 100 g/d of a control fat preparation (CON, n = 15), 50 g/d of the control fat preparation and 50 g/d CLA supplement – containing 12.0% cis-9, trans-11 and 11.9% trans-10, cis-12 CLA of total fatty acid methyl esters – (CLA-50, n = 15) or 100 g/d of the CLA supplement (CLA-100, n = 16) did not influence the major fatty acids (C18:0, C16:0, cis-9 C18:1, cis-9, cis-12 C18:2, cis-5, cis-8, cis-11, cis-14 C20:4) in the lipid fraction of PBMC. The proportion of trans-10, cis-12 CLA of total fatty acids was increased in both CLA supplemented groups, but there was no effect on the cis-9, trans-11 isomer. Furthermore, the proportion of trans-9 C18:1 and cis-12 C24:1 was reduced in the CLA-100 group. The mitogen stimulated cell proliferation was not influenced by CLA feeding.

Conclusion
CLA supplementation influenced the FA profile of some minor FA in PBMC, but these changes did not lead to differences in the mitogen induced activation of the cells.
Thickness dependency of field emission in amorphous and nanostructured carbon thin films
Authors: Shakerzadeh Maziar , Teo Edwin Hang Tong , Tay Beng Kang 
Published: June 2012

Abstract
Thickness dependency of the field emission of amorphous and nanostructured carbon thin films has been studied. It is found that in amorphous and carbon films with nanometer-sized sp
2 clusters, the emission does not depend on the film thickness. This further proves that the emission happens from the surface sp
2 sites due to large enhancement of electric field on these sites. However, in the case of carbon films with nanocrystals of preferred orientation, the emission strongly depends on the film thickness. sp
2-bonded nanocrystals have higher aspect ratio in thicker films which in turn results in higher field enhancement and hence easier electron emission.
Gold and silver nanoparticles for biomolecule immobilization and enzymatic catalysis
Authors: Petkova Galina A , Záruba Кamil , Žvátora Pavel , Král Vladimír 
Published: June 2012

Abstract
In this work, a simple method for alcohol synthesis with high enantiomeric purity was proposed. For this, colloidal gold and silver surface modifications with 3-mercaptopropanoic acid and cysteamine were used to generate carboxyl and amine functionalized gold and silver nanoparticles of 15 and 45 nm, respectively. Alcohol dehydrogenase from Thermoanaerobium brockii (TbADH) and its cofactor (NADPH) were physical and covalent (through direct adsorption and using cross-linker) immobilized on nanoparticles' surface. In contrast to the physical and covalent immobilizations that led to a loss of 90% of the initial enzyme activity and 98% immobilization, the use of a cross-linker in immobilization process promoted a loss to 30% of the initial enzyme activity and >92% immobilization. The yield of NADPH immobilization was about 80%. The best results in terms of activity were obtained with Ag-citr nanoparticle functionalized with carboxyl groups (Ag-COOH), Au-COOH(CTAB), and Au-citr functionalized with amine groups and stabilized with CTAB (Au-NH2(CTAB)) nanoparticles treated with 0.7% and 1.0% glutaraldehyde. Enzyme conformation upon immobilization was studied using fluorescence and circular dichroism spectroscopies. Shift in ellipticity at 222 nm with about 4 to 7 nm and significant decreasing in fluorescence emission for all bioconjugates were observed by binding of TbADH to silver/gold nanoparticles. Emission redshifting of 5 nm only for Ag-COOH-TbADH bioconjugate demonstrated change in the microenvironment of TbADH. Enzyme immobilization on glutaraldehyde-treated Au-NH2(CTAB) nanoparticles promotes an additional stabilization preserving about 50% of enzyme activity after 15 days storage. Nanoparticles attached-TbADH-NADPH systems were used for enantioselective (ee > 99%) synthesis of (S)-7-hydroxy-2-tetralol.
The effect of waiting times from general practitioner referral to MRI or orthopaedic consultation for the knee on patient-based outcomes
Authors: Brealey S , Andronis L , Dale V , Gibbon A J , Gilbert F J , Hendry M , Hood K , King D , Wilkinson C ,   on behalf of the DAMASK Trial Team
Published: June 2012

Objectives
The purpose of this study was to test for the effect of waiting time from general practitioner (GP) referral to MRI or to orthopaedic consultation on outcomes of patients with knee problems, and to test whether any characteristics of trial participants predicted waiting time to MRI or orthopaedics.

Methods
We undertook secondary analyses of data on 553 participants from a randomised trial who were recruited from 163 general practices during November 2002 to October 2004.

Results
Of the patients allocated to MRI, 263 (94%) had an MRI, and of those referred to orthopaedics, 236 (86%) had an orthopaedic consultation. The median (interquartile range) waiting time in days from randomisation to MRI was 41.0 (21.0–71.0) and to orthopaedic appointment was 78.5 (54.5–167.5). Waiting time was found to have no significant effect on patient outcome for both the Short Form 36-item (SF-36) physical functioning score (p=0.570) and the Knee Quality of Life 26-item (KQoL-26) physical functioning score (p=0.268). There was weak evidence that males waited less time for their MRI (p=0.049) and older patients waited longer for their orthopaedic referral (p=0.049). For patients who resided in the catchment areas of some centres there were significantly longer waiting times for both MRI and orthopaedic appointment.

Conclusion
Where patients reside is a strong predictor of waiting time for access to services such as MRI or orthopaedics. There is no evidence to suggest, however, that this has a significant effect on physical well-being in the short term for patients with knee problems.
Breast tomosynthesis and digital mammography: a comparison of diagnostic accuracy
Authors: Svahn T M , Chakraborty D P , Ikeda D , Zackrisson S , Do Y , Mattsson S , Andersson I 
Published: June 2012

Objective
Our aim was to compare the ability of radiologists to detect breast cancers using one-view breast tomosynthesis (BT) and two-view digital mammography (DM) in an enriched population of diseased patients and benign and/or healthy patients.

Methods
All participants gave informed consent. The BT and DM examinations were performed with about the same average glandular dose to the breast. The study population comprised patients with subtle signs of malignancy seen on DM and/or ultrasonography. Ground truth was established by pathology, needle biopsy and/or by 1-year follow-up by mammography, which retrospectively resulted in 89 diseased breasts (1 breast per patient) with 95 malignant lesions and 96 healthy or benign breasts. Two experienced radiologists, who were not participants in the study, determined the locations of the malignant lesions. Five radiologists, experienced in mammography, interpreted the cases independently in a free-response study. The data were analysed by the receiver operating characteristic (ROC) and jackknife alternative free-response ROC (JAFROC) methods, regarding both readers and cases as random effects.

Results
The diagnostic accuracy of BT was significantly better than that of DM (JAFROC: p=0.0031, ROC: p=0.0415). The average sensitivity of BT was higher than that of DM (∼90% vs ∼79%; 95% confidence interval of difference: 0.036, 0.108) while the average false-positive fraction was not significantly different (95% confidence interval of difference: −0.117, 0.010).

Conclusion
The diagnostic accuracy of BT was superior to DM in an enriched population.
Radiofrequency ablation combined with transcatheter arterial embolisation in rabbit liver: investigation of the ablation zone according to the time interval between the two therapies
Authors: Lee I J , Kim Y I , Kim K W , Kim D H , Ryoo I , Lee M W , Chung J W 
Published: June 2012

Objectives
This study was designed to evaluate the extent of the radiofrequency ablation zone in relation to the time interval between transcatheter arterial embolisation (TAE) and radiofrequency ablation (RFA) and, ultimately, to determine the optimal strategy of combining these two therapies for hepatocellular carcinoma.

Methods
15 rabbits were evenly divided into three groups: Group A was treated with RFA alone; Group B was treated with TAE immediately followed by RFA; and Group C was treated with TAE followed by RFA 5 days later. All animals underwent perfusion CT (PCT) scans immediately after RFA. Serum liver transaminases were measured to evaluate acute liver damage. Animals were euthanised for pathological analysis of ablated tissues 10 days after RFA. Non-parametric analyses were conducted to compare PCT indices, the RFA zone and liver transaminase levels among the three experimental groups.

Results
Group B showed a significantly larger ablation zone than the other two groups. Arterial liver perfusion and hepatic perfusion index represented well the perfusion decrease after TAE on PCT. Although Group B showed the most elevated liver transaminase levels at 1 day post RFA, the enzymes decreased to levels that were not different from the other groups at 10 days post-RFA.

Conclusions
When combined TAE and RFA therapy is considered, TAE should be followed by RFA as quickly as possible, as it can be performed safely without serious hepatic deterioration, despite the short interval between the two procedures.
Public Nomination and Direct Election in China
Authors: Tsai Wen-Hsuan , Kao Peng-Hsiang 
Published: June 2012

Abstract
This research takes the case of Public Nomination and Direct Election, currently being rolled out in the People's Republic of China, to explain the function of elections in China. We believe that the goal of implementing this election system is to increase the governing ability of the Chinese Communist Party, thus sustaining the survival of the party-state system.
Hong Kong's Democratic Movement and the Making of China's Offshore Civil Society
Authors: Hung Ho-fung , Ip Iam-chong 
Published: June 2012

Abstract
Hong Kong's civil society has remained vibrant since the sovereignty handover in 1997, thanks to an active defense by the democratic movement against Beijing's attempts to control civil liberties. Hong Kong is becoming mainland China's offshore civil society, serving as a free platform for information circulation and organizing among mainland activists and intellectuals.
Sequence-Based Detection and Breakpoint Assembly of Polymorphic Inversions
Authors: Corbett-Detig Russell B , Cardeno Charis , Langley Charles H 
Published: June 2012

Abstract
Inversion polymorphisms have occupied a privileged place in Drosophila genetic research since their discovery in the 1920s. Indeed, inversions seem to be nearly ubiquitous, and the majority of species that have been thoroughly surveyed have been found to be polymorphic for one or more chromosomal inversions. Despite enduring interest, however, inversions remain difficult to study because their effects are often cryptic, and few efficient assays have been developed. Even in Drosophila melanogaster, in which inversions can be reliably detected and have received considerable attention, the breakpoints of only three inversions have been characterized molecularly. Hence, inversion detection and assay design remain important unsolved problems. Here, we present a method for identification and local de novo assembly of inversion breakpoints using next-generation paired-end reads derived from D. melanogaster isofemale lines. PCR and cytological confirmations demonstrate that our method can reliably assemble inversion breakpoints, providing tools for future research on D. melanogaster inversions as well as a framework for detection and assay design of inversions and other chromosome aberrations in diverse taxa.
GaN quantum dots as charge storage elements for memory devices
Authors: Dimitrakis P. , Normand P. , Bonafos C. , Papadomanolaki E. , Iliopoulos E. 
Published: June 2012

ABSTRACTWe investigated the fabrication and the memory characteristics of metal-oxide-semiconductor (MOS) capacitors with GaN quantum-dots (QDs) embedded in the gate insulator. The GaN-QDs, which act as discrete charge storage nodes, were deposited by radio-frequency molecular-beam-deposition (RF-MBD). The influence of the deposition dose on the QDs size and density was investigated by TEM studies. Subsequent electrical characterization measurements on memory capacitors revealed enhanced electron charge trapping leading to significant memory windows. Charge retention measurements at room temperature showed that the sample with the lowest concentration of QDs exhibits a significant programming window after ten-years.
Properties of Hydrogenated Amorphous Silicon-Germanium Alloys Deposited by Dual Target Reactive Magnetron Sputtering
Authors: Levang Samuel J. , Doyle James R. 
Published: June 2012

ABSTRACTHydrogenated amorphous silicon-germanium alloy thin films (a-Si1-xGex:H) were deposited using reactive magnetron sputtering. Dual targets of silicon and germanium were sputtered in an argon + hydrogen atmosphere using rf excitation. Films with x = 0.4 were deposited as a function of substrate temperature and hydrogen partial pressure, and were evaluated by dark and photoconductivity, infrared absorption, and optical transmission. Photosensitivity reached a maximum value of about 5000 between 150 and 200 °C. Using the stretching modes in the region of 2000 cm-1, the hydrogen bonding was characterized in terms of the preferential attachment ratio (PA), which represents the ratio of H bonded to silicon to that bonded to germanium. The PA shows a systematic increase with increasing temperature, independent of hydrogen partial pressure. The interplay between thermodynamic and kinetics effects in determining PA and film quality will be discussed.
EFFECTS OF INTERELECTRODE SPACING ON THE PROPERTIES OF MICROCRYSTALLINE SILICON ABSORBER AND SOLAR CELLS
Authors: Nemeth Bill , Zhang Xiaodan , Yan Yanfa , Wang Qi 
Published: June 2012

ABSTRACTWe study the effect of the spacing between electrodes in very high frequency plasma enhanced chemical vapor deposition on the properties of microcrystalline silicon films and their related n-i-psolar cells. We vary the spacing from 0.2 to 1.0 cm to deposit microcrystalline silicon at 67.8 MHz while maintaining other growth parameters. The spacing between the electrodes significantly changes the plasma conditions, which govern film precursor chemistry as well as introduce etching and ion bombardment to the film; thereby, influencing nucleation and growth of the microcrystalline Si films. The resulting films were characterized by UV-Vis spectrometry, atomic force microscopy, X-ray diffraction, and transmission electron microscopy. We found that deposition rate decreases, while surface roughness and short circuit current density increase with smaller spacing.
Color separation enhancement of pixn diodes by optimizing absorption regions of a-SiGe:H/a-SiC:H alloys and using a low reflective Al-doped ZnO cathode
Authors: Bablich Andreas , Watty Krystian , Merfort Christian , Boehm Markus 
Published: June 2012

ABSTRACTSecurity imaging systems working with crystalline silicon CCD or CMOS detectors are not able to distinguish colorimetrically between a large number of dangerous chemical substances, for example whitish powders [1]. In order to offer an alternative to expensive and destructive chemical methods of analysis, we developed optimized hydrogenated amorphous silicon (a-Si:H) multicolor photodiodes with different spectral response characteristics for a reliable, fast, cheap and non-destructive identification of potentially dangerous substances. Experimental optical, C-V and I-V studies were performed to explore the effect of combining linear graded a‑SiC:H-/a‑SiGe:H layers with low-reflective ZnO:Al back-contacts. Typically, a-Si:H with profiled energy gaps can be found in tandem solar cells to optimize the collection of incoming photons [2,3]. We determined the absorption coefficients of a group of a-SiC:H and a-SiGe:H graded and non-graded layers to calculate the penetration depth of photons at different energies into the device structure. Knowing the indices of absorption, refraction and extinction, it is possible to engineer diodes in such a way that accumulations of charge carriers are generated precisely at varying device depths. Common chromium back reflectors avoid a sharp falling edge of the sensitivity towards longer wavelengths and lead to interference fringes in the spectral response [4]. By combining linear graded absorption zones and ZnO:Al back contacts, we designed an optimized device with a highly precise adjustment of the spectral sensitivity reaching from 420 nm to 560 nm and reduced interference fringes at a very low reverse bias voltage of maximum -2.5 V. Similar three terminal devices allow a shift from 440 nm to 630 nm, however, at a much higher reverse bias of -11 V at 560 nm [4]. Present research efforts concentrate on the development of fast and high dynamic front illumination device structures which ensure a continuous narrow-band shift of the spectral photosensitivity and an optimum adaption to a predetermined light source-/sample measurement configuration.
Photonic and plasmonic crystal based enhancement of solar cells- overcoming the Lambertian classical 4n2 limit
Authors: Biswas Rana , Xu Chun , Pattnaik Sambit , Bhattacharya Joydeep , Chakravarty Nayan , Dalal Vikram 
Published: June 2012

ABSTRACTLong wavelength photons in the red and near infrared region of the spectrum are poorly absorbed in thin film silicon cells, due to their long absorption lengths. Advanced light trapping methods are necessary to harvest these photons. The basic physical mechanisms underlying the enhanced light trapping in thin film solar cells using periodic back reflectors include strong diffraction coupled with light concentration. These will be contrasted with the scattering mechanisms involved in randomly textured back reflectors, which are commonly used for light trapping. A special class of conformal solar cells with plasmonic nano-pillar back reflectors will be described, that generates absorption beyond the classical 4n2 limit (the Lambertian limit) averaged over the entire wavelength range for nc-Si:H. The absorption beyond the classical limit exists for common 1 micron thick nc-Si:H cells, and is further enhanced for non-normal light. Predicted currents exceed 31 mA/cm2 for nc-Si:H. The nano-pillars are tapered into conical protrusions that enhance plasmonic effects. Such conformal nc-Si:H solar cells with the same device architecture were grown on periodic nano-hole, periodic nano-pillar substrates and compared with randomly textured substrates, formed by annealing Ag/ZnO or etched Ag/ZnO. The periodic back reflector solar cells with nano-pillars demonstrated higher quantum efficiency and higher photo-currents that were 1 mA/cm2higher than those for the randomly textured back reflectors. Losses within the experimental solar architectures are discussed.