bluuebunny/crossref_metadata_2025_split huggingface dataset:
Data analytics and stochastic modeling in a semiconductor fab
Authors: Bagchi Sugato , Baseman Robert J. , Davenport Andrew , Natarajan Ramesh , Slonim Noam , Weiss Sholom 
Published: February 2010

AbstractThe scale, scope and complexity of the manufacturing operations in a semiconductor fab lead to some unique challenges in ensuring product quality and production efficiency. We describe the use of various analytical techniques, based on data mining, process trace data analysis, stochastic simulation and production optimization, to address these manufacturing issues, motivated by the following two objectives. The first objective is to identify the sub‐optimal process conditions or tool settings that potentially affect the process performance and product quality. The second objective is to improve the overall production efficiency through better planning and resource scheduling, in an environment where the product mix and process flow requirements are complex and constantly changing. Copyright © 2010 John Wiley & Sons, Ltd.
Testing for Genetic Association in the Presence of Linkage and Gene–Covariate Interactions
Authors: Callegaro Andrea , Lebrec Jeremie J. P. , Houwing‐Duistermaat Jeanine J. 
Published: February 2010

AbstractIn order to study family‐based association in the presence of linkage, we extend a generalized linear mixed model proposed for genetic linkage analysis (Lebrec and van Houwelingen (2007), Human Heredity 64, 5–15) by adding a genotypic effect to the mean. The corresponding score test is a weighted family‐based association tests statistic, where the weight depends on the linkage effect and on other genetic and shared environmental effects. For testing of genetic association in the presence of gene–covariate interaction, we propose a linear regression method where the family‐specific score statistic is regressed on family‐specific covariates. Both statistics are straightforward to compute. Simulation results show that adjusting the weight for the within‐family variance structure may be a powerful approach in the presence of environmental effects. The test statistic for genetic association in the presence of gene–covariate interaction improved the power for detecting association. For illustration, we analyze the rheumatoid arthritis data from GAW15. Adjusting for smoking and anti‐cyclic citrullinated peptide increased the significance of the association with the DR locus.
High‐Dimensional Cox Models: The Choice of Penalty as Part of the Model Building Process
Authors: Benner Axel , Zucknick Manuela , Hielscher Thomas , Ittrich Carina , Mansmann Ulrich 
Published: February 2010

AbstractThe Cox proportional hazards regression model is the most popular approach to model covariate information for survival times. In this context, the development of high‐dimensional models where the number of covariates is much larger than the number of observations ( $p \,{\gg }\, n$ ) is an ongoing challenge. A practicable approach is to use ridge penalized Cox regression in such situations. Beside focussing on finding the best prediction rule, one is often interested in determining a subset of covariates that are the most important ones for prognosis. This could be a gene set in the biostatistical analysis of microarray data. Covariate selection can then, for example, be done by L1‐penalized Cox regression using the lasso (Tibshirani (1997). Statistics in Medicine 16, 385–395). Several approaches beyond the lasso, that incorporate covariate selection, have been developed in recent years. This includes modifications of the lasso as well as nonconvex variants such as smoothly clipped absolute deviation (SCAD) (Fan and Li (2001). Journal of the American Statistical Association 96, 1348–1360; Fan and Li (2002). The Annals of Statistics 30, 74–99). The purpose of this article is to implement them practically into the model building process when analyzing high‐dimensional data with the Cox proportional hazards model. To evaluate penalized regression models beyond the lasso, we included SCAD variants and the adaptive lasso (Zou (2006). Journal of the American Statistical Association 101, 1418–1429). We compare them with “standard” applications such as ridge regression, the lasso, and the elastic net. Predictive accuracy, features of variable selection, and estimation bias will be studied to assess the practical use of these methods. We observed that the performance of SCAD and adaptive lasso is highly dependent on nontrivial preselection procedures. A practical solution to this problem does not yet exist. Since there is high risk of missing relevant covariates when using SCAD or adaptive lasso applied after an inappropriate initial selection step, we recommend to stay with lasso or the elastic net in actual data applications. But with respect to the promising results for truly sparse models, we see some advantage of SCAD and adaptive lasso, if better preselection procedures would be available. This requires further methodological research.
Online‐Reaktionsverfolgung bei der Polymerisation
Authors: Hergeth W.‐D. , Frauendorfer E. 
Published: February 2010

AbstractKlassische Messgrößen wie Temperatur oder Druck, die den physikalischen Zustand eines Reaktors beschreiben, werden kombiniert mit instrumentell analytischen Techniken, um den Reaktionsfortschritt zu verfolgen. Am Beispiel industrieller Polymerisationen wird der Einsatz von NIR‐ und Raman‐Spektroskopie, Kalorimetrie und Softsensoren zur Rohstoffeingangskontrolle, Reaktionsverfolgung und Vorhersage von Produkteigenschaften beschrieben.
Grading of nonrhabdomyosarcoma soft tissue sarcoma in children and adolescents
Authors: Khoury Joseph D. , Coffin Cheryl M. , Spunt Sheri L. , Anderson James R. , Meyer William H. , Parham David M. 
Published: February 2010

AbstractBACKGROUND:Two systems for grading soft tissue sarcoma are widely used currently: the National Cancer Institute (NCI) and the Fédération Nationale des Centers de Lutte Contre le Cancer (FNCLCC) systems. Both were developed using cohorts of predominantly adult patients. The Pediatric Oncology Group (POG) system, based on the NCI system, was adapted for grading pediatric nonrhabdomyosarcoma soft tissue sarcoma (NRSTS). The applicability and prognostic utility of the FNCLCC system in pediatric NRSTS has not been assessed or compared with the POG system.METHODS:Tumors from 130 patients with malignant NRSTS enrolled on 3 completed multi‐institutional clinical trials were assessed. Of 130 tumors, 102 (78%) were localized and 28 (22%) metastatic. Of the localized tumors, 55 of 102 (54%) were >5 cm. The estimated 5‐year event‐free survival (EFS) for the entire group was 47%.RESULTS:As expected, stage and tumor sizes were predictive of EFS (P < .001). Both systems were predictive of 5‐year EFS (POG, P = .0095 and FNCLCC, P = .0075). Patients whose tumors received discrepant grades (POG‐G3 vs FNCLCC‐G2/G1) (n = 44) had an intermediate outcome between those with concordant (G3 [n = 44] or G1/G2 [n = 42]) grades on both systems (P = .0018). By multivariate analysis, the mitotic index was predictive of EFS, using a cutoff of 10 mitotic figures per 10 high‐power fields (P < .001).CONCLUSIONS:In conclusion, both FNCLCC and POG systems provide an adequate prognostic measure of outcome for pediatric NRSTS; albeit, a sizeable subset of cases with apparently intermediate prognosis was graded differently by the 2 systems. The mitotic index appears to be a key parameter in grading pediatric NRSTS. Cancer 2010. © 2010 American Cancer Society.
Radiofrequency ablation as an adjunct to systemic chemotherapy for colorectal pulmonary metastases
Authors: Chua Terence C. , Thornbury Kelly , Saxena Akshat , Liauw Winston , Glenn Derek , Zhao Jing , Morris David L. 
Published: February 2010

AbstractBACKGROUND:Radiofrequency ablation (RFA) is an alternative to local treatment for pulmonary metastases in patients who are nonsurgical candidates. Based on previously documented efficacy of this treatment, the authors retrospectively studied the prognostic factors for long‐term survival.METHODS:One hundred patients with unresectable colorectal pulmonary metastases underwent percutaneous RFA. Clinical and treatment variables were collected and evaluated using univariate and multivariate analyses with overall survival as the primary endpoint.RESULTS:At a median follow‐up period of 23 (range, 1 to 96) months from the time of RFA treatment, 49 patients have died. The median overall survival after RFA treatment was 36 months and 5‐year overall survival rates of 30%. Univariate analyses demonstrated that histopathological grade (p < .001), time to RFA treatment (p = .017), response to treatment (p < .001), repeat RFA treatments (p = .001), presence of extrapulmonary metastases (p < .001), presence of mediastinal lymphadenopathy (p = .007), and adjunct systemic chemotherapy (p < .001) were associated with overall survival. Multivariate analyses demonstrated that response to RFA treatment (p < .001), repeat RFA treatment (p = .002), presence of extrapulmonary metastases (p = .008), and use of adjunct systemic chemotherapy (p = .05) were independent predictors for survival.CONCLUSIONS:Radiofrequency ablation for colorectal pulmonary metastases represents a step forward towards a nonsurgical option of combining systemic and local treatment for metastatic disease and is a safe treatment with a low risk profile. Cancer 2010. © 2010 American Cancer Society.
Platinum‐Decorated Au Porous Nanotubes as Highly Efficient Catalysts for Formic Acid Electro‐Oxidation
Authors: Gu Xiaohu , Cong Xiao , Ding Yi 
Published: February 2010

AbstractAu porous nanotubes (PNTs) were synthesized by a templating technique that involves the chemical synthesis of Ag nanowire precursors, electroless surface modification with Au, and selective etching. A subsequent galvanic replacement reaction between [PtCl6]2− and residual Ag generates Pt‐decorated Au porous nanotubes (Pt/Au PNTs), which represents a new type of self‐sustained high surface area electrocatalysts with ultra‐low Pt loading. Structural characterizations with scanning electron microscopy (SEM), transmission electron microscopy (TEM) and X‐ray powder diffraction (XRD) reveal a novel nanoarchitecture with multimodal open porosity and excellent structural continuity and integrity. Cyclic voltammetry (CV) demonstrates that these Pt/Au PNTs possess very high electrocatalytic activity toward formic acid oxidation with enhanced tolerance to CO poisoning.
Crystallization of model fat blends containing symmetric and asymmetric monounsaturated triacylglycerols
Authors: Vereecken Jeroen , Foubert Imogen , Smith Kevin W. , Sassano Gary J. , Dewettinck Koen 
Published: February 2010

AbstractIn this study, the crystallization and melting properties of four different fat blends with the same saturated fat content (30%) but with different ratios of symmetric and asymmetric monounsaturated triacylglycerols were investigated using pNMR, DSC and polarized light microscopy. Blends were either palmitic (P) or stearic (S) based, and were combinations of SatOSat‐rich (Sat = saturated, O = oleic) and SatSatO‐rich vegetable oils with high‐oleic sunflower oil. The DSC results demonstrate that there was almost no difference in crystallization mechanism and crystallization rate between the two P‐based blends. Both blends showed a two‐step crystallization, which can be explained by polymorphism. Stop‐and‐return DSC results suggested an initial crystallization into an unstable polymorph followed by polymorphic transition during the crystallization. For the S‐based blends there was a clear difference between the SOS‐rich and the SSO‐rich blend, with a slower crystallization for the SSO‐rich blend. Possibly, this can be explained by fractional crystallization. The microstructure did not differ greatly between the blends. Directly after crystallization, the crystals of the SSO‐rich blend were slightly larger than the crystals of the SOS‐rich blend.
Fatty acid esters of glycidol in refined fats and oils
Authors: Weißhaar Rüdiger , Perz Roland 
Published: February 2010

AbstractDiscrepancies in the analysis of 3‐chloropropane‐1,2‐diol (3‐MCPD) esters can be explained by the hypothesis that in some refined oils significant amounts of fatty acid esters of glycidol (glycidyl esters) are present in addition to 3‐MCPD esters. Glycidyl esters were separated from triacylglycerols by gel permeation chromatography (GPC) and detected by gas chromatography‐mass spectrometry (GC‐MS). Six samples of palm oil and palm oil‐based fats were analyzed by GPC and GC‐MS. In chromatograms of all samples, significant peaks, retention time and mass spectra in conformity with self‐synthesized glycidyl palmitate and glycidyl oleate were detectable. Quantification of individual glycidyl esters was not possible because of a lack of pure standards. Concentration of ester‐bound glycidol in different samples of fats and oils was estimated using an indirect difference method. Glycidyl esters could be detected only in refined, but not in crude or native, fats and oils. The highest concentrations were detected in palm oil and palm oil‐based fats. In a palm oil sample, glycidyl ester concentration varied according to different deodorization parameters, temperature, and time, while 3‐MCPD ester concentration was relatively constant, indicating that mitigation of glycidyl esters possibly may be achieved by optimizing refining parameters.
Optimization of the synthesis of lower glycerides rich in unsaturated fatty acid residues obtained via enzymatic ethanolysis of sesame oil
Authors: Criado Manuel , Otero Cristina 
Published: February 2010

AbstractThe lipases Novozym 435, Lipozyme TL IM and Lipozyme RM IM were employed in the production of lower acylglycerols (LG), i.e. mono‐ (MAG) and diacylglycerols (DAG), rich in unsaturated fatty acids from sesame oil in batch reactors. The effect of the molar ratio of ethanol to fatty acids on the reusability of these immobilized lipases was studied in detail. The effects of pretreatment on lipase activity for ethanolysis were investigated. Glycerol had a strong product inhibition effect on the ethanolysis reaction, and a relatively large excess of ethanol was necessary to remove the glycerol adsorbed on these biocatalysts. The enzymatic activity was drastically reduced by addition of water to the reaction medium. The presence of organic solvents (hexane and acetone) did not favor the production of LG. For the Novozym 435‐catalyzed reaction, optimum conditions were a molar ratio of ethanol to fatty acid residues of 5 : 1, 15 wt‐% lipase and 50 °C. For Lipozyme TL IM, the optimum conditions were a molar ratio of ethanol to fatty acid residues of 5 : 1, 20 wt‐% biocatalyst, and 30 °C. Novozym 435 and Lipozyme TL IM produced LG with molar ratios of unsaturated to saturated fatty acids of 20.4 in 1 h and 25.3 in 5 h, respectively. In the original oil, this ratio was 5. For trials conducted under optimum conditions, the products from the Novozym 435 trials contained 21.8 wt‐% triacylglycerols (TAG), 24 wt‐% DAG and 54.2 wt‐% MAG. The products of the Lipozyme TL IM trials consisted of 12.9 wt‐% DAG and 87.1 wt‐% MAG. No TAG species were detected.
White‐rot fungi combined with lignite granules and lignitic xylite to decolorize textile industry wastewater
Authors: Böhmer Ulrike , Kirsten Claudia , Bley Thomas , Noack Michael 
Published: February 2010

AbstractThe feasibility of using immobilized fungi to decolorize textile industry wastewater containing dyes was examined in experiments with: two species of white‐rot fungi (a Marasmius species from Indonesia, which produces copious biomass, and Trametes hirsuta, which produces high levels of laccase); two types of lignite products as adsorbents and solid substrates (lignitic xylite and lignite granules); and four simulated wastewaters, each containing a different kinds of reactive textile azo dye. The growth, extracellular enzyme production, dye degradation and dye absorption parameters afforded by each permutation of fungus, substrate and dye were then measured. Both fungal species grew poorly on xylite, but much better on lignite granules. Marasmius sp. produced up to 67 U/L laccase on lignite granules, but just 10 U/L on xylite, and no other detectable extracellular enzymes. T. hirsuta produced 1343 U/L laccase and up to 12 U/L unspecific peroxidase when immobilized on lignite granules, and 898 U/L laccase with 14 U/L unspecific peroxidase when immobilized on xylite. The amount of color lost from the dye solutions depended on both the type of dye and the enzyme levels in the fermenter.
Role of soil interstitial water in the accumulation of hexahydro-1,3,5-trinitro-1,3,5-triazine in the earthworm Eisenia andrei
Authors: Savard Kathleen , Sarrazin Manon , Dodard Sabine G. , Monteil-Rivera Fanny , Kuperman Roman G. , Hawari Jalal , Sunahara Geoffrey I. 
Published: February 2010

Abstract
The uptake of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) from soil by the earthworm Eisenia andrei was examined by using the equilibrium partitioning (EqP) theory and a three-compartment model including soil (S), interstitial water (IW), and earthworms (E). The RDX concentrations were measured using U.S. Environmental Protection Agency (U.S. EPA) Method 8330A and high-performance liquid chromatography (HPLC). The S-IW studies were conducted using four natural soils with contrasting physicochemical properties that were hypothesized to affect the bioavailability of RDX. Each soil was amended with nominal RDX concentrations ranging from 1 to 10,000 mg/kg. The HPLC analysis showed that the IW extracted from soil was saturated with RDX at 80 mg/kg or greater soil concentrations. The calculated S-IW coefficient (Kp) values for RDX ranged from 0.4 to 1.8 ml/g soil, depending on the soil type, and were influenced by the organic matter content. In the IW-E studies, earthworms were exposed to nonlethal RDX concentrations in aqueous media. The uptake of RDX by the earthworms correlated well (r2 = 0.99) with the dissolved RDX concentrations. For the E-S studies, earthworms were exposed to RDX-amended soils used in the S-IW studies. The bioconcentration factors (BCF; ratios of E-to-IW RDX concentrations) were relatively constant (∼5) up to 80 mg/kg soil RDX concentrations, which encompass the RDX saturation limit in the interstitial water of the tested soils. At this concentration range, the RDX uptake from interstitial water was likely dominated by passive diffusion and could be used as an indicator of bioavailability. Other mechanisms may be involved at greater RDX soil concentrations. Environ. Toxicol. Chem. 2010;29:998–1005. © 2009 SETAC
Partitioning, bioavailability, and toxicity of the pyrethroid insecticide cypermethrin in sediments
Authors: Maund Steve J. , Hamer Mick J. , Lane Mike C. G. , Farrelly Eamonn , Rapley Jean H. , Goggin Una M. , Gentle Wendy E. 
Published: February 2010

Abstract
The partitioning, bioavailability, and toxicity of cypermethrin in water–sediment systems was investigated. Cypermethrin adsorbed extensively and rapidly, with an overall mean organic carbon (OC) adsorption partition coefficient (Koc) of 350,000, and approximately 99% adsorption occurred within 24 h. Bioavailability was measured via body burdens of Daphnia magna and Chironomus tentans. Mean biota–sediment accumulation factors (BSAFs), that is, the concentration in the organism as a proportion of the concentration in the sediment, decreased with increasing OC content. The BSAF values were 0.31, 0.14, and 0.08 for D. magna and 0.63, 0.19, and 0.08 for C. tentans, in 1, 3, and 13% OC sediments, respectively. The 10-d median lethal sediment concentrations (LC50s) of cypermethrin were 3.6, 18, and 32 mg/kg for Hyalella azteca and 13, 67, and 62 mg/kg for C. tentans in 1, 3, and 13% OC sediments, respectively. Predictions of aqueous concentrations at the LC50 in sediments (based on Koc) compared well to each other and to effect concentrations from studies in water alone, suggesting that equilibrium partitioning theory could be used reasonably to predict and normalize the toxicity of cypermethrin across sediments of differing OC content.
Detection of estrogenic potency in wastewater and surface water with three in vitro bioassays
Authors: Murk Albertinka J. , Legler Juliette , van Lipzig Marola M. H. , Meerman John H. N. , Belfroid Angelique C. , Spenkelink Albertus , van der Burg Bart , Rijs Gerard B. J. , Vethaak Dick 
Published: February 2010

Abstract
A study was performed to optimize sample preparation and application of three in vitro assays for measuring estrogenic potency in environmental extracts. The three assays applied were an estrogen receptor (ER)-binding assay and two reporter gene effect assays: a yeast estrogen screen (YES) and the ER-mediated chemically activated luciferase gene expression (ER-CALUX) assay. All assays were able to detect estrogenicity, but the amounts of material needed for the assays differed greatly between the three assays (ER-binding assay ≫ YES &gt; ER-CALUX). In addition, in the ER-binding assay, both agonists and antagonists give an estrogenic response, resulting in higher estradiol equivalency (EEQ) levels than both the ER-CALUX and the YES assay for the same samples. The EEQs found in wastewater treatment plants (WTPs) with the ER-CALUX assay were in the range of 4 to 440 and 0.11 to 59 pmol/L for influent and effluent, respectively. Water extracts from four large rivers had levels ranging from 0.25 to 1.72 pmol/L. Extracts from suspended matter and sludge contained estrogenic potency of 0.26 to 2.49 and 1.6 to 41 pmol EEQ/g dry weight, respectively. In WTPs, the average reduction of estrogenic potency in effluent compared to influent was 90 to 95% in municipal WTPs and about 50% in industrial WTPs. In influent, 30% of the ER-CALUX activity could not be explained by the calculated potencies based on chemical analysis of a number of known (xeno)estrogens; in effluent the unexplained fraction was 80%. These first results of analyzing estrogenic potency in WTP water and surface water in The Netherlands indicate that further studies are warranted to investigate the actual risks for aquatic systems.
Comparison of copper levels in runoff from fresh-market vegetable production using polyethylene mulch or a vegetative mulch
Authors: Rice Pamela J. , McConnell Laura L. , Heighton Lynne P. , Sadeghi Ali M. , Isensee Allan R. , Teasdale John R. , Abdul-Baki Aref A. , Harman-Fetcho Jennifer A. , Hapeman Cathleen J. 
Published: February 2010

AbstractRunoff from tomato (Lycopersicon esculentum Mill.) production with polyethylene mulch has been implicated in the failure of commercial shellfish farms in the Mid-Atlantic Region of the United States. Copper, applied in the form of copper hydroxide, is the most widely used fungicide–bactericide for control of tomato diseases and recently has been detected in the Chesapeake Bay (USA) watershed. Elevated levels of copper have been shown to have adverse effects on shellfish, finfish, and other aquatic organisms. This research evaluates the off-site movement of copper with the dissolved phase and the particulate phase of runoff from controlled field plots containing tomato plants grown in either polyethylene mulch or a vegetative mulch, hairy vetch (Vicia villosa Roth.). Overall, runoff collected from polyethylene mulch plots contained significantly (p ≤ 0.05) greater loads of dissolved- and particulate-phase copper than runoff from hairy vetch mulch plots. However, the loss of copper associated with the particulate phase was significantly greater (p ≤ 0.05) than that associated with the dissolved phase of runoff from both mulch treatments, with the particulate phase accounting for more than 80% of the copper loads. The reported toxicity of copper to aquatic organisms and the greater runoff volume, soil loss, and off-site loading of copper measured in runoff from the polyethylene mulch suggests that this management practice is less sustainable and may have a more harmful impact on aquatic ecosystems.