bluuebunny/crossref_metadata_2025_split huggingface dataset:
Causality in acute encephalitis: defining aetiologies
Authors: GRANEROD J. , CUNNINGHAM R. , ZUCKERMAN M. , MUTTON K. , DAVIES N. W. S. , WALSH A. L. , WARD K. N. , HILTON D. A. , AMBROSE H. E. , CLEWLEY J. P. , MORGAN D. , LUNN M. P. , SOLOMON T. , BROWN D. W. G. , CROWCROFT N. S. 
Published: April 2010

SUMMARYDefining the causal relationship between a microbe and encephalitis is complex. Over 100 different infectious agents may cause encephalitis, often as one of the rarer manifestations of infection. The gold-standard techniques to detect causative infectious agents in encephalitis in life depend on the study of brain biopsy material; however, in most cases this is not possible. We present the UK perspective on aetiological case definitions for acute encephalitis and extend them to include immune-mediated causes. Expert opinion was primarily used and was supplemented by literature-based methods. Wide usage of these definitions will facilitate comparison between studies and result in a better understanding of the causes of this devastating condition. They provide a framework for regular review and updating as the knowledge base increases both clinically and through improvements in diagnostic methods. The importance of new and emerging pathogens as causes of encephalitis can be assessed against the principles laid out here.
Rationale and design of the Eplerenone in Mild Patients Hospitalization And SurvIval Study in Heart Failure (EMPHASIS‐HF)
Authors: Zannad Faiez , McMurray John J.V. , Drexler Helmut , Krum Henry , van Veldhuisen Dirk J. , Swedberg Karl , Shi Harry , Vincent John , Pitt Bertram 
Published: April 2010

AimsIn chronic heart failure (HF), aldosterone antagonists have been shown to improve survival in patients with low ejection fraction and moderate‐to‐severe symptoms [New York Heart Association (NYHA) classes III and IV]. Efficacy of these agents was also shown when they were administered to patients with left ventricular dysfunction and signs and symptoms of CHF early after acute myocardial infarction. It is not known whether the selective aldosterone antagonist eplerenone can improve outcomes in mildly symptomatic patients. The Eplerenone in Mild Patients Hospitalization And SurvIval Study in Heart Failure (EMPHASIS‐HF) was designed to evaluate the effect of eplerenone on mortality and morbidity in patients with chronic systolic HF in NYHA class II.MethodsApproximately 3100 patients with ejection fraction ≤30% and estimated glomerular filtration rate ≥30 mL/min/1.73 m2 will be recruited. Patients are randomized 1:1 to double‐blind eplerenone or placebo in addition to standard chronic HF therapy. Doses are adjusted from 25 mg every other day to 50 mg daily, depending on serum potassium. The primary endpoint is a composite of time to cardiovascular death or first hospital admission for worsening HF, whichever occurs first.ConclusionThe study will be complete when approximately 813 subjects experience a primary endpoint.Clinical Trials.gov. NCT00232180.
Acute effects of urocortin 2 on cardiac function and propensity for arrhythmias in an animal model of hypertension‐induced left ventricular hypertrophy and heart failure
Authors: Meili‐Butz Silvia , Bühler Katrin , John Dietlinde , Buser Peter , Vale Wylie W. , Peterson Kirk L. , Brink Marijke , Dieterle Thomas 
Published: April 2010

AimsTo test acute effects of the corticotropin‐releasing factor‐related peptide urocortin 2 (Ucn2) on left ventricular (LV) function and the propensity for ventricular arrhythmias in the isolated heart of an animal model of hypertension‐induced heart failure.Methods and resultsHearts from Dahl salt‐sensitive rats with severe LV dysfunction were perfused according to Langendorff. Left ventricular developed pressure and the positive and negative derivatives of LV pressure were analysed before and after perfusion with Ucn2 (n = 15) or normal perfusion solution (control, n = 9). Intracellular calcium cycling parameters were assessed by surface fluorometry. Furthermore, monophasic action potential duration (MAPD) and ventricular fibrillation threshold (VFT) were determined, the latter by a train‐of‐pulses method at increasing voltage to scan the vulnerable period of repolarization. Urocortin 2 significantly affected intracellular calcium cycling and improved LV contractile function and relaxation. Compared with baseline values, Ucn2 significantly decreased MAPD at 30, 50, and 90% repolarization and significantly increased VFT compared with baseline values. No changes were observed in control experiments.ConclusionAdministration of Ucn2 rapidly improves LV function and increases VF threshold in failing, isolated rat hearts with increased propensity for ventricular arrhythmias. These observations suggest a potential use of Ucn2 as a safe and novel agent for the treatment of acute heart failure.
Effect of General Anesthesia and Orthopedic Surgery on Serum Tryptase
Authors: Garvey Lene H. , Bech Birgitte , Mosbech Holger , Krøigaard Mogens , Belhage Bo , Husum Bent , Poulsen Lars K. 
Published: April 2010

Background
Mast cell tryptase is used clinically in the evaluation of anaphylaxis during anesthesia, because symptoms and signs of anaphylaxis are often masked by the effect of anesthesia. No larger studies have examined whether surgery and anesthesia affect serum tryptase. The aim of this study was to investigate the effect of anesthesia and surgery on serum tryptase in the absence of anaphylaxis.

Methods
The study included 120 patients (median age, 54 yr; range, 19-94 yr) undergoing elective orthopedic surgery in general anesthesia. Exclusion criteria were allergic reactions during this or previous anesthesia, hematologic disease, or high-dose corticosteroid treatment. Blood samples for tryptase analysis (ImmunoCAP; Phadia, Uppsala, Sweden) were drawn shortly before anesthesia and after anesthesia and surgery.

Results
Median duration of anesthesia was 105 min (range, 44-263 min). Median interval between blood samples was 139 min (range, 39-370 min). Mean tryptase before surgery was 5.01 microg/l, with a mean decrease of 0.55 microg/l (P < 0.0001; 95% CI, 0.3-0.8) postoperatively. All patients received intravenous fluid (median value 750 ml; range, 200-2000 ml) perioperatively. There was no significant effect of gender, age, American Society of Anesthesiologist's physical status classification, or self-reported allergy on serum tryptase.

Conclusions
Serum tryptase shows small intraindividual variation in the absence of anaphylaxis. A small decrease was observed postoperatively, likely due to dilution by intravenous fluid. On suspected anaphylaxis during anesthesia, tryptase values, even within the normal reference interval, should, when possible, be compared with the patient's own basal level taken more than 24 h after the reaction.
Cytosol-Localized Heat Shock Factor-Binding Protein, AtHSBP, Functions as a Negative Regulator of Heat Shock Response by Translocation to the Nucleus and Is Required for Seed Development in Arabidopsis
Authors: Hsu Shih-Feng , Lai Hui-Chuan , Jinn Tsung-Luo 
Published: April 2010

Abstract
Heat shock response (HSR) is a universal mechanism in all organisms. It is under tight regulation by heat shock factors (HSFs) and heat shock proteins (HSPs) after heat shock (HS) to prevent stress damage. On the attenuation of HSR, HSP70 and HSF Binding Protein1 (HSBP1) interact with HSF1 and thus dissociate trimeric HSF1 into an inert monomeric form in humans. However, little is known about the effect of HSBP with thermal stress in plants. This report describes our investigation of the role of AtHSBP in Arabidopsis (Arabidopsis thaliana) by genetic and molecular approaches. AtHSBP was heat inducible and ubiquitously expressed in all tissues; AtHSBP was also crucial for seed development, as demonstrated by AtHSBP-knockout lines showing seed abortion. Thermotolerance results showed that AtHSBP participates in acquired thermotolerance but not basal thermotolerance and is a negative regulator of HSR. Subcellular localization revealed that the cytosol-localized AtHSBP translocated to the nucleus in response to HS. Protoplast two-hybrid assay results confirmed that AtHSBP interacts with itself and with the HSFs, AtHSFA1a, AtHSFA1b, and AtHSFA2. AtHSBP also negatively affected AtHSFA1b DNA-binding capacity in vitro. Quantitative polymerase chain reaction and western-blot analysis demonstrated that altered levels of AtHSBP lead to differential HSP expression, mainly during the recovery from HS. These studies provide a new insight into HSBP in plants and reveal that AtHSBP is a negative regulator of HSR and required for seed development.
VND-INTERACTING2, a NAC Domain Transcription Factor, Negatively Regulates Xylem Vessel Formation in Arabidopsis
Authors: Yamaguchi Masatoshi , Ohtani Misato , Mitsuda Nobutaka , Kubo Minoru , Ohme-Takagi Masaru , Fukuda Hiroo , Demura Taku 
Published: April 2010

Abstract
The Arabidopsis thaliana NAC domain transcription factor VASCULAR-RELATED NAC-DOMAIN7 (VND7) acts as a master regulator of xylem vessel differentiation. To understand the mechanism by which VND7 regulates xylem vessel differentiation, we used a yeast two-hybrid system to screen for proteins that interact with VND7 and identified cDNAs encoding two NAC domain proteins, VND-INTERACTING1 (VNI1) and VNI2. Binding assays demonstrated that VNI2 effectively interacts with VND7 and the VND family proteins, VND1-5, as well as with other NAC domain proteins at lower affinity. VNI2 is expressed in both xylem and phloem cells in roots and inflorescence stems. The expression of VNI2 overlaps with that of VND7 in elongating vessel precursors in roots. VNI2 contains a predicted PEST motif and a C-terminally truncated VNI2 protein, which lacks part of the PEST motif, is more stable than full-length VNI2. Transient reporter assays showed that VNI2 is a transcriptional repressor and can repress the expression of vessel-specific genes regulated by VND7. Expression of C-terminally truncated VNI2 under the control of the VND7 promoter inhibited the normal development of xylem vessels in roots and aerial organs. These data suggest that VNI2 regulates xylem cell specification as a transcriptional repressor that interacts with VND proteins and possibly also with other NAC domain proteins.
Arrangement of Photosystem II and ATP Synthase in Chloroplast Membranes of Spinach and Pea
Authors: Daum Bertram , Nicastro Daniela , Austin Jotham , McIntosh J. Richard , Kühlbrandt Werner 
Published: April 2010

Abstract
We used cryoelectron tomography to reveal the arrangements of photosystem II (PSII) and ATP synthase in vitreous sections of intact chloroplasts and plunge-frozen suspensions of isolated thylakoid membranes. We found that stroma and grana thylakoids are connected at the grana margins by staggered lamellar membrane protrusions. The stacking repeat of grana membranes in frozen-hydrated chloroplasts is 15.7 nm, with a 4.5-nm lumenal space and a 3.2-nm distance between the flat stromal surfaces. The chloroplast ATP synthase is confined to minimally curved regions at the grana end membranes and stroma lamellae, where it covers 20% of the surface area. In total, 85% of the ATP synthases are monomers and the remainder form random assemblies of two or more copies. Supercomplexes of PSII and light-harvesting complex II (LHCII) occasionally form ordered arrays in appressed grana thylakoids, whereas this order is lost in destacked membranes. In the ordered arrays, each membrane on either side of the stromal gap contains a two-dimensional crystal of supercomplexes, with the two lattices arranged such that PSII cores, LHCII trimers, and minor LHCs each face a complex of the same kind in the opposite membrane. Grana formation is likely to result from electrostatic interactions between these complexes across the stromal gap.
Coding behavioural data for cladistic analysis: using dynamic homology without parsimony
Authors: Japyassú Hilton F. , Machado Fabio de A. 
Published: April 2010

AbstractMany of the controversies around the concept of homology rest on the subjectivity inherent to primary homology propositions. Dynamic homology partially solves this problem, but there has been up to now scant application of it outside of the molecular domain. This is probably because morphological and behavioural characters are rich in properties, connections and qualities, so that there is less space for conflicting character delimitations. Here we present a new method for the direct optimization of behavioural data, a method that relies on the richness of this database to delimit the characters, and on dynamic procedures to establish character state identity. We use between‐species congruence in the data matrix and topological stability to choose the best cladogram. We test the methodology using sequences of predatory behaviour in a group of spiders that evolved the highly modified predatory technique of spitting glue onto prey. The cladogram recovered is fully compatible with previous analyses in the literature, and thus the method seems consistent. Besides the advantage of enhanced objectivity in character proposition, the new procedure allows the use of complex, context‐dependent behavioural characters in an evolutionary framework, an important step towards the practical integration of the evolutionary and ecological perspectives on diversity.© The Willi Hennig Society 2010.
Assessing genetic diversity of Vietnamese local chicken breeds using microsatellites
Authors: Cuc N. T. K. , Simianer H. , Eding H. , Tieu H. V. , Cuong V. C. , Wollny C. B. A. , Groeneveld L. F. , Weigend S. 
Published: April 2010

SummaryThis study aimed to assess genetic diversity within and between nine Vietnamese local chicken breeds and two Chinese breeds included for comparison. Genotyping 29 microsatellites revealed high diversity of both Vietnamese and Chinese breeds. Cluster analysis using the structure software suggested six clusters as the most likely grouping of the 11 breeds studied. These groups encompassed four homogeneous clusters, one formed by the two Chinese breeds and the other three representing a single breed each: the Mekong Delta breed Ac, the South Central Coast breed Choi, and the Red River Delta breed Dong Tao. The six remaining breeds formed two additional admixed clusters.
Effects of p.C430S polymorphism in the PPARGC1A gene on muscle fibre type composition and meat quality in Yorkshire pigs
Authors: Kim J. M. , Lee K. T. , Lim K. S. , Park E. W. , Lee Y. S. , Hong K. C. 
Published: April 2010

SummaryThe peroxisome proliferator‐activated receptor‐gamma coactivator‐1A (encoded by PPARGC1A) is involved in the formation of type I fibres. Therefore, the PPARGC1A gene can be considered as a functional candidate gene for muscle fibre type composition and meat quality in pigs. The aim of this study was to investigate the associations of the p.C430S polymorphic site in exon 8 of the PPARGC1A gene with muscle fibre characteristics and meat quality traits. The polymorphism was genotyped by PCR‐RFLP using AluI restriction enzyme on a total of 152 Yorkshire pigs. Statistical analyses revealed that the p.C430S genotypes significantly affected number (P < 0.05) and area (P < 0.01) of type I muscle fibre, and were significantly associated with muscle pH (P < 0.001) and lightness (P < 0.01). On the basis of these results, we suggest that the p.C430S polymorphism can induce variation of type I fibre formation in porcine longissimus dorsi muscle and that it can be used as a meaningful molecular marker for better meat quality.
Proliferation of myofibroblasts in the stroma of renal oncocytoma
Authors: Yen T.‐H. , Chen Y. , Fu J.‐F. , Weng C.‐H. , Tian Y.‐C. , Hung C.‐C. , Lin J.‐L. , Yang C.‐W. 
Published: April 2010

AbstractObjectives:  Myofibroblasts are a vital component of stroma of many malignant neoplasms, but it is not yet established whether stromal myofibroblasts also exist in benign tumours such as oncocytoma of the kidney.Materials and methods:  Histomorphological and immunohistochemical analysis of 16 renal oncocytomas diagnosed at Chang Gung Memorial Hospital, Taiwan, has been performed.Results:  Renal oncocytomas were composed of oncocytes, large cells with granular eosinophilic cytoplasm, arranged mostly in sheets, in tubulocystic or combined pattern. Few oncocytes appeared to be undergoing proliferation or apoptosis. MIB‐1 and active caspase 3 indices were low, but higher in tumour than in surrounding non‐tumour parenchyma (MIB‐1: 0.93 ± 0.09 versus 0.46 ± 0.07, P < 0.001 and active caspase 3: 0.76 ± 0.08 versus 0.41 ± 0.09, P < 0.001). Wnt/β‐catenin signalling was not implicated in this neoplasm, as there was no loss of E‐cadherin membranous localization or expression of intranuclear β‐catenin in the cells. Clumps of oncocytes were stained with periodic acid Schiff and had collagen I‐, collagen III‐ and fibronectin‐positive, but desmin‐ and human caldesmon‐negative stromas. Importantly, α‐smooth muscle actin (SMA)‐immunostaining established the myofibroblastic nature of many of the stromal cells. Some of the myofibroblasts were also positive for MIB‐1, indicating a proliferative role for them in the stroma.Conclusions:  Renal oncocytomas were composed of two independent compartments: benign oncocytes and pronounced fibrotic stroma, which consisted of proliferating myofibroblasts (SMA‐ and MIB‐1‐positive) which were associated with excessive deposition of extracellular matrix (periodic acid Schiff‐component, collagen I‐, collagen III‐ and fibronectin‐positive, and desmin‐ and human caldesmon‐negative).
Renal phosphate handling in human – what can we learn from hereditary hypophosphataemias?
Authors: Amatschek Stefan , Haller Maria , Oberbauer Rainer 
Published: April 2010

Eur J Clin Invest 2010; 40 (6): 552–560AbstractBackground  Renal reabsorption of inorganic phosphate is critical for the maintenance of phosphate homeostasis. The sodium dependent phosphate cotransporters NaPi‐IIa and NaPi‐IIc have been identified to fulfill this task at the brush border membrane of proximal tubule cells. Various factors including dietary phosphate intake, parathyroid hormone, or the so called phosphatonins such as FGF23 have been shown to regulate activity of these transporters.Design  This review seeks to give an update on our current knowledge about regulatory mechanisms involved in human renal phosphate reabsorption.Results  Recently, an increasing number of genes have been identified that are directly associated with inherited phosphate wasting disorders (Klotho, PHEX, DMP1 and NHERF1). Several of these genes are predominantly expressed by osteocytes and osteoclasts in the bone suggesting indispensable signalling pathways between kidneys and the skeleton.Conclusion  In this review, the affected gene products in these inherited hypophosphataemias and their contribution to phosphate homeostasis are discussed.
Environmental controls on CH4 emission from polygonal tundra on the microsite scale in the Lena river delta, Siberia
Authors: SACHS TORSTEN , GIEBELS MICHAEL , BOIKE JULIA , KUTZBACH LARS 
Published: April 2010

AbstractThe carbon budgets of the atmosphere and terrestrial ecosystems are closely coupled by vertical gas exchange fluxes. Uncertainties remain with respect to high latitude ecosystems and the processes driving their temporally and spatially highly variable methane (CH4) exchange. Problems associated with scaling plot measurements to larger areas in heterogeneous environments are addressed based on intensive field studies on two nested spatial scales in Northern Siberia. CH4 fluxes on the microsite scale (0.1–100 m2) were measured in the Lena River Delta from July through September 2006 by closed chambers and were compared with simultaneous ecosystem scale (104–106 m2) flux measurements by the eddy covariance (EC) method. Closed chamber measurements were conducted almost daily on 15 plots in four differently developed polygon centers and on a polygon rim. Controls on CH4 emission were identified by stepwise multiple regression. In contrast to relatively low ecosystem‐scale fluxes controlled mainly by near‐surface turbulence, fluxes on the microsite scale were almost an order of magnitude higher at the wet polygon centers and near zero at the drier polygon rim and high‐center polygon. Microsite scale CH4 fluxes varied strongly even within the same microsites. The only statistically significant control on chamber‐based fluxes was surface temperature calculated using the Stefan–Boltzmann equation in the wet polygon centers, whereas no significant control was found for the low emissions from the dry sites. The comparison with the EC measurements reveals differences in controls and the seasonal dynamics between the two measurement scales, which may have consequences for scaling and process‐based models. Despite those differences, closed chamber measurements from within the EC footprint could be scaled by an area‐weighting approach of landcover classes based on high‐resolution imagery to match the total ecosystem‐scale emission. Our nested sampling design allowed for checking scaling results against measurements and to identify potentially missed sources or sinks.
Net primary productivity allocation and cycling of carbon along a tropical forest elevational transect in the Peruvian Andes
Authors: GIRARDIN C. A. J. , MALHI Y. , ARAGÃO L. E. O. C. , MAMANI M. , HUARACA HUASCO W. , DURAND L. , FEELEY K. J. , RAPP J. , SILVA‐ESPEJO J. E. , SILMAN M. , SALINAS N. , WHITTAKER R. J. 
Published: April 2010

AbstractThe net primary productivity, carbon (C) stocks and turnover rates (i.e. C dynamics) of tropical forests are an important aspect of the global C cycle. These variables have been investigated in lowland tropical forests, but they have rarely been studied in tropical montane forests (TMFs). This study examines spatial patterns of above‐ and belowground C dynamics along a transect ranging from lowland Amazonia to the high Andes in SE Peru. Fine root biomass values increased from 1.50 Mg C ha−1 at 194 m to 4.95 ± 0.62 Mg C ha−1 at 3020 m, reaching a maximum of 6.83 ± 1.13 Mg C ha−1 at the 2020 m elevation site. Aboveground biomass values decreased from 123.50 Mg C ha−1 at 194 m to 47.03 Mg C ha−1 at 3020 m. Mean annual belowground productivity was highest in the most fertile lowland plots (7.40 ± 1.00 Mg C ha−1 yr−1) and ranged between 3.43 ± 0.73 and 1.48 ± 0.40 Mg C ha−1 yr−1 in the premontane and montane plots. Mean annual aboveground productivity was estimated to vary between 9.50 ± 1.08 Mg C ha−1 yr−1 (210 m) and 2.59 ± 0.40 Mg C ha−1 yr−1 (2020 m), with consistently lower values observed in the cloud immersion zone of the montane forest. Fine root C residence time increased from 0.31 years in lowland Amazonia to 3.78 ± 0.81 years at 3020 m and stem C residence time remained constant along the elevational transect, with a mean of 54 ± 4 years. The ratio of fine root biomass to stem biomass increased significantly with increasing elevation, whereas the allocation of net primary productivity above‐ and belowground remained approximately constant at all elevations. Although net primary productivity declined in the TMF, the partitioning of productivity between the ecosystem subcomponents remained the same in lowland, premontane and montane forests.