bluuebunny/crossref_metadata_2025_split huggingface dataset:
Relationship of exclusive breast-feeding to infections and growth of Tanzanian children born to HIV-infected women
Authors: Mwiru Ramadhani S , Spiegelman Donna , Duggan Christopher , Peterson Karen , Liu Enju , Msamanga Gernard , Aboud Said , Fawzi Wafaie W 
Published: May 2011

AbstractObjectiveWe examined the relationships between exclusive breast-feeding and the risks of respiratory, diarrhoea and nutritional morbidities during the first 2 years of life among children born to women infected with HIV-1.DesignWe prospectively determined the incidence of respiratory illnesses, diarrhoea, fever, hospitalizations, outpatient visits and nutritional morbidities. Generalized estimating equations were used to estimate the relative risks for morbidity episodes and Cox proportional hazards models to estimate the incidence rate ratios of nutritional morbidities.SettingDar es Salaam, Tanzania.SubjectsThe sample consisted of 666 children born to HIV-infected women.ResultsThe 666 children were followed for 2 years. Exclusive breast-feeding was associated with lower risk for cough (rate ratio (RR) = 0·49, 95 % CI 0·41, 0·60,P< 0·0001), cough and fever (RR = 0·44, 95 % CI 0·32, 0·60,P< 0·0001) and cough and difficulty breathing or refusal to feed (RR = 0·31, 95 % CI 0·18, 0·55,P< 0·0001). Exclusive breast-feeding was also associated with lower risk of acute diarrhoea, watery diarrhoea, dysentery, fever and outpatient visits during the first 6 months of life, but showed no effect at 6–24 months of life. Exclusive breast-feeding did not significantly reduce the risks of nutritional morbidities during the first 2 years of life.ConclusionsExclusive breast-feeding is strongly associated with reductions in the risk of respiratory and diarrhoea morbidities during the first 6 months of life among children born to HIV-infected women.
The beginning of the ‘Age of Dinosaurs’: a brief overview of terrestrial biotic changes during the Triassic
Authors: Fraser Nicholas C. , Sues Hans-Dieter 
Published: May 2011

ABSTRACTThe first appearance of dinosaurs during the early Late Triassic coincided with marked faunal changes in terrestrial ecosystems. Most of the major groups of extant tetrapods (or their proximate sister-taxa), including mammaliaforms, crocodyliform archosaurs, lepidosaurs and turtles, also first appeared in the fossil record during the Late Triassic. On the other hand, a number of Palaeozoic ‘holdovers’, such as procolophonid parareptiles, dicynodont therapsids and many groups of temnospondyls, vanished near or at the end of the Triassic. The tempo and mode of this faunal turnover have long been debated, but there has been growing acceptance of a rather sudden event, although the precise dating of such an event remains controversial. However, new discoveries have cast doubt on this assumption. The persistence of non-dinosaurian dinosauromorphs alongside dinosaurs well into Norian times hints at a more protracted turnover. New data on Triassic insect assemblages indicate that turnover among insects may also have been more protracted and possibly not co-incident with the faunal changes among tetrapods. Future work directed toward improved absolute age assessments for major faunal assemblages will be critical for a better understanding of the transition from therapsid-dominated to dinosaur-dominated communities during the early Mesozoic.
The Late Triassic (Norian) Adamanian–Revueltian tetrapod faunal transition in the Chinle Formation of Petrified Forest National Park, Arizona
Authors: Parker William G. , Martz Jeffrey W. 
Published: May 2011

ABSTRACTRecent stratigraphic revisions of the Upper Triassic Chinle Formation of Petrified Forest National Park, in conjunction with precise and accurate documentation of fossil tetrapod occurrences, clarified the local biostratigraphy, with regional and global implications. A significant overlap between Adamanian and Revueltian faunas is rejected, as is the validity of the Lamyan sub-land vertebrate faunachron. The Adamanian–Revueltian boundary can be precisely placed within the lower Jim Camp Wash beds of the Sonsela Member and thus does not occur at the hypothesised Tr-4 unconformity. This mid-Norian faunal turnover, may coincide with a floral turnover, based on palynology studies and also on sedimentological evidence of increasing aridity. Available age constraints bracketing the turnover horizon are consistent with the age of the Manicouagan impact event. The rise of dinosaurs in western North America did not correspond to the Adamanian–Revueltian transition, and overall dinosauromorph diversity seems to have remained at a constant level across it. The paucity of detailed Late Triassic vertebrate biostratigraphic data and radioisotopic dates makes it currently impossible to either support or reject the existence of globally synchronous Late Triassic extinctions for tetrapods.
Implications of the Newark Supergroup-based astrochronology and geomagnetic polarity time scale (Newark-APTS) for the tempo and mode of the early diversification of the Dinosauria
Authors: Olsen Paul E. , Kent Dennis V. , Whiteside Jessica H. 
Published: May 2011

ABSTRACTThe Newark-APTS established a high-resolution framework for the Late Triassic and Early Jurassic. Palaeomagnetic polarity correlations to marine sections show that stage-level correlations of continental sequences were off by as much as 10 million years. New U–Pb ages show the new correlations and the Newark basin astrochronology to be accurate. Correlation of Newark-APTS to the Chinle Formation/Dockum Group, Glen Canyon Group, Fleming Fjord Formation and Ischigualasto Formation led to the following conclusions: (1) there are no unequivocal Carnian-age dinosaurs; (2) the Norian Age was characterised by a slowly increasing saurischian diversity but no unequivocal ornithischians; (3) there was profound Norian and Rhaetian continental provinciality; (4) the classic Chinle-, Germanic- and Los Colorados-type assemblages may have persisted to the close of the Rhaetian; (5) the distinct genus-level biotic transition traditionally correlated with the marine Carnian–Norian is in fact mid-Norian in age and within published error of the Manicouagan impact; (6) the end-Triassic marine and continental extinctions as seen in eastern North America were contemporaneous; and (7) compared to Triassic communities, Hettangian and Sinemurian age terrestrial communities were nearly globally homogenous and of low diversity. Consequently, the complex emerging picture of dinosaur diversification demands biostratigraphically-independent geochronologies in each of the faunally-important regions.
Macroevolutionary patterns in the evolutionary radiation of archosaurs (Tetrapoda: Diapsida)
Authors: Brusatte Stephen L. , Benton Michael J. , Lloyd Graeme T. , Ruta Marcello , Wang Steve C. 
Published: May 2011

ABSTRACTThe rise of archosaurs during the Triassic and Early Jurassic has been treated as a classic example of an evolutionary radiation in the fossil record. This paper reviews published studies and provides new data on archosaur lineage origination, diversity and lineage evolution, morphological disparity, rates of morphological character change, and faunal abundance during the Triassic–Early Jurassic. The fundamental archosaur lineages originated early in the Triassic, in concert with the highest rates of character change. Disparity and diversity peaked later, during the Norian, but the most significant increase in disparity occurred before maximum diversity. Archosaurs were rare components of Early–Middle Triassic faunas, but were more abundant in the Late Triassic and pre-eminent globally by the Early Jurassic. The archosaur radiation was a drawn-out event and major components such as diversity and abundance were discordant from each other. Crurotarsans (crocodile-line archosaurs) were more disparate, diverse, and abundant than avemetatarsalians (bird-line archosaurs, including dinosaurs) during the Late Triassic, but these roles were reversed in the Early Jurassic. There is no strong evidence that dinosaurs outcompeted or gradually eclipsed crurotarsans during the Late Triassic. Instead, crurotarsan diversity decreased precipitously by the end-Triassic extinction, which helped usher in the age of dinosaurian dominance.
Saltopus, a dinosauriform from the Upper Triassic of Scotland
Authors: Benton Michael J. , Walker Alick D. 
Published: May 2011

ABSTRACTSaltopus elginensis, reported in 1910 from the yellow sandstones of the Lossiemouth Sandstone Formation (Late Triassic) of Morayshire, NE Scotland, has long been controversial. It was described first as a theropod dinosaur, but others disagreed. Reanalysis of the type, and only, specimen using casts from the natural rock moulds, as well as X-rays and CT scans, has revealed new anatomical data not available to previous researchers. Saltopus was a small, 800–1000 mm-long biped, whose tail made up more than half its length. It is an avemetatarsalian because it has elongated and tightly bunched metatarsals, the tibia is longer than the femur, the calcaneal tuber is rudimentary or absent, and metatarsal II is equal to or longer than metatarsal IV; a unique assemblage of characters diagnosing this clade. Saltopus is a dinosauromorph on the basis of the reduced fingers IV and V, the saddle-shaped dorsal margin of the iliac blade, and the articulation of sacral rib 1 close to the front of the iliac blade. Saltopus is a dinosauriform on the basis of the trochanteric shelf and lesser trochanter on the proximal end of the femur, the waisted sacral ribs, and perhaps the rod-like and straight pubis. However, it lacks all apomorphies of Dinosauria, retaining for example the primitive condition of two sacral vertebrae. Cladistic analyses place Saltopus within Dinosauromorpha and Dinosauriformes, and between the basal dinosauriform Pseudolagosuchus and the derived clade consisting of Silesauridae and Dinosauria, so making it one of a radiation of small pre-dinosaurian bipedal archosaurs in the Triassic found so far in North and South America and in Europe.
New dinosaur species from the Upper Triassic Upper Maleri and Lower Dharmaram formations of Central India
Authors: Novas Fernando E. , Ezcurra Martin D. , Chatterjee Sankar , Kutty T. S. 
Published: May 2011

ABSTRACTThe beginning of dinosaur evolution is currently known based on a handful of highly informative Gondwanan outcrops of Ischigualastian age (late Carnian–early Norian). The richest Triassic dinosaur records of the southern continents are those of South America and South Africa, with taxonomically diverse faunas, whereas faunas from India and central Africa are more poorly known. Here, the known diversity of Gondwanan Triassic dinosaurs is increased with new specimens from central India, which allow a more comprehensive characterisation of these dinosaur assemblages. Five dinosauriform specimens are reported from the probable late Norian–earliest Rhaetian Upper Maleri Formation, including two new sauropodomorph species, the non-plateosaurian Nambalia roychowdhurii and the plateosaurian Jaklapallisaurus asymmetrica, a guaibasaurid and two basal dinosauriforms. The Lower Dharmaram Formation, probably latest Norian–Rhaetian in age, includes basal sauropodomorph and neotheropod remains, providing the second record of a Triassic Gondwanan neotheropod. The currently available evidence suggests that the oldest known Gondwanan dinosaur assemblages (Ischigualastian) were not homogeneous, but more diverse in South America than in India. In addition, the Upper Maleri and Lower Dharmaram dinosaur assemblages resemble purported coeval South American and European beds in the presence of basal sauropodomorphs. Accordingly, the current available evidence of the Triassic beds of the Pranhita–Godavari Basin suggests that dinosaurs increased in diversity and abundance during the late Norian to Rhaetian in this region of Gondwana.
The roles of herbivory and omnivory in early dinosaur evolution
Authors: Barrett Paul M. , Butler Richard J. , Nesbitt Sterling J. 
Published: May 2011

ABSTRACTHerbivorous and omnivorous dinosaurs were rare during the Carnian stage of the Late Triassic. By contrast, the succeeding Norian stage witnessed the rapid diversification of sauropodomorphs and the rise of the clade to ecological dominance. Ornithischians, by contrast, remained relatively rare components of dinosaur assemblages until much later in the Mesozoic. The causes underlying the differential success of ornithischians and sauropodomorphs remain unclear, but might be related to trophic specialisation. Sauropodomorphs replaced an established herbivore guild consisting of rhynchosaurs, aetosaurs and basal synapsids, but this faunal turnover appears to have been opportunistic and cannot be easily attributed to either competitive interactions or responses to floral change. Consideration of diversity patterns and relative abundance suggests that the ability to eat plants might have been a major factor promoting sauropodomorph success, but that it was less important in the early evolution of Ornithischia. On the basis of current evidence it is difficult to determine the diet of the ancestral dinosaur and scenarios in which omnivory or carnivory represent the basal condition appear equally likely.
Clay mineral continental amplifier for marine carbon sequestration in a greenhouse ocean
Authors: Kennedy Martin J. , Wagner Thomas 
Published: May 2011

The majority of carbon sequestration at the Earth’s surface occurs in marine continental margin settings within fine-grained sediments whose mineral properties are a function of continental climatic conditions. We report very high mineral surface area (MSA) values of 300 and 570 m
2
g in Late Cretaceous black shales from Ocean Drilling Program site 959 of the Deep Ivorian Basin that vary on subcentennial time scales corresponding with abrupt increases from approximately 3 to approximately 18% total organic carbon (TOC). The observed MSA changes with TOC across multiple scales of variability and on a sample-by-sample basis (centimeter scale), provides a rigorous test of a hypothesized influence on organic carbon burial by detrital clay mineral controlled MSA. Changes in TOC also correspond with geochemical and sedimentological evidence for water column anoxia. Bioturbated intervals show a lower organic carbon loading on mineral surface area of 0.1 mg-OC m
-2
when compared to 0.4 mg-OC m
-2
for laminated and sulfidic sediments. Although either anoxia or mineral surface protection may be capable of producing TOC of < 5%, when brought together they produced the very high TOC (10–18%) apparent in these sediments. This nonlinear response in carbon burial resulted from minor precession-driven changes of continental climate influencing clay mineral properties and runoff from the African continent. This study identifies a previously unrecognized land–sea connection among continental weathering, clay mineral production, and anoxia and a nonlinear effect on marine carbon sequestration during the Coniacian-Santonian Oceanic Anoxic Event 3 in the tropical eastern Atlantic.
Isocyanic acid in the atmosphere and its possible link to smoke-related health effects
Authors: Roberts James M. , Veres Patrick R. , Cochran Anthony K. , Warneke Carsten , Burling Ian R. , Yokelson Robert J. , Lerner Brian , Gilman Jessica B. , Kuster William C. , Fall Ray , de Gouw Joost 
Published: May 2011

We measured isocyanic acid (HNCO) in laboratory biomass fires at levels up to 600 parts per billion by volume (ppbv), demonstrating that it has a significant source from pyrolysis/combustion of biomass. We also measured HNCO at mixing ratios up to 200 pptv (parts-per-trillion by volume) in ambient air in urban Los Angeles, CA, and in Boulder, CO, during the recent 2010 Fourmile Canyon fire. Further, our measurements of aqueous solubility show that HNCO is highly soluble, as it dissociates at physiological pH. Exposure levels > 1 ppbv provide a direct source of isocyanic acid and cyanate ion (NCO
-
) to humans at levels that have recognized health effects: atherosclerosis, cataracts, and rheumatoid arthritis, through the mechanism of protein carbamylation. In addition to the wildland fire and urban sources, we observed HNCO in tobacco smoke, HNCO has been reported from the low-temperature combustion of coal, and as a by-product of urea-selective catalytic reduction (SCR) systems that are being phased-in to control on-road diesel NO

x

emissions in the United States and the European Union. Given the current levels of exposure in populations that burn biomass or use tobacco, the expected growth in biomass burning emissions with warmer, drier regional climates, and planned increase in diesel SCR controls, it is imperative that we understand the extent and effects of this HNCO exposure.
Harmonic functions on hyperbolic graphs
Authors: Petit Camille 
Published: May 2011

We consider admissible random walks on hyperbolic graphs. For a given harmonic function on such a graph, we prove that asymptotic properties of non-tangential boundedness and non-tangential convergence are almost everywhere equivalent. The proof is inspired by the works of F. Mouton in the cases of Riemannian manifolds of pinched negative curvature and infinite trees. It involves geometric and probabilitistic methods.
SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences
Authors: Armstrong Craig T. , Vincent Thomas L. , Green Peter J. , Woolfson Derek N. 
Published: May 2011

Abstract
Motivation: The coiled coil is a ubiquitous α-helical protein structure domain that directs and facilitates protein–protein interactions in a wide variety of biological processes. At the protein-sequence level, coiled coils are quite straightforward and readily recognized via the conspicuous heptad repeats of hydrophobic and polar residues. However, structurally they are more complicated, existing in a range of oligomer states and topologies. Here, we address the issue of predicting coiled-coil oligomeric state from protein sequence.
Results: The predominant coiled-coil oligomer states in Nature are parallel dimers and trimers. Here, we improve and retrain the first-published algorithm, SCORER, that distinguishes these states, and test it against the current standard, MultiCoil. The SCORER algorithm has been revised in two key respects: first, the statistical basis for SCORER is improved markedly. Second, the training set for SCORER has been expanded and updated to include only structurally validated coiled coils. The result is a much-improved oligomer state predictor that outperforms MultiCoil, particularly in assigning oligomer state to short coiled coils, and those that are diverse from the training set.
Availability: SCORER 2.0 is available via a web interface at http://coiledcoils.chm.bris.ac.uk/Scorer. Source code, training sets and Supporting Information can be downloaded from the same site.
Contact: coiledcoils-scorer@sympa.bristol.ac.uk; d.n.woolfson@bristol.ac.uk
Supplementary information:Supplementary data are available at Bioinformatics online.
The Guild of Surgeons as a Tradition of Moral Enquiry
Authors: Hall Daniel E. 
Published: May 2011

AbstractAlisdair MacIntyre argues that the virtues necessary for good work are everywhere and always embodied by particular communities of practice. As a general surgeon, MacIntyre’s work has deeply influenced my own understanding of the practice of good surgery. The task of this essay is to describe how the guild of surgeons functions as a more-or-less coherent tradition of moral enquiry, embodying and transmitting the virtues necessary for the practice of good surgery. Beginning with an example of surgeons engaged in a process of moral discernment, I describe how the practice of surgery depends on the cultivation of a certain kind of practical wisdom (phronesis) that effectively orders the techniques of surgery toward particular notions of human flourishing within the limits of what is possible with the particular body on which the surgeon operates. I then argue that one reason why surgeons train in an apprenticeship model of “residency” is to cultivate not only the technical skill but also the practical wisdom to perform good surgery. I conclude by noting that the surgical profession is enduring necessary, but unprecedented, changes in the way it practices and transmits its art; and without deliberate and sustained attention to the character formation of surgeons, the profession runs the risk of creating excellent technicians who are nonetheless ill-equipped to practice wise and good surgery.
Gastrointestinal Release of β‐Glucan and Pectin Using an In Vitro Method
Authors: Ulmius Matilda , Johansson‐Persson Anna , Nordén Tina Immerstrand , Bergenståhl Björn , Önning Gunilla 
Published: May 2011

ABSTRACTThe release of soluble dietary fiber is a prerequisite for viscous effects and hence beneficial health properties. A simple in vitro method was adapted to follow the release during gastrointestinal digestion, and the percentage of solubilized fiber was measured over time. β‐Glucan from oat bran was mainly released during gastric digestion while the release of pectin from sugar beet fiber continued in the small intestine. Unmilled fractions of sugar beet fiber released more soluble fiber than oat bran flakes, probably due to the porous structure of sugar beet fiber as a result of manufacturing processes, but also due to differences in source. Milling to smaller fiber particles significantly improved releasability (from 20 to 55% released β‐glucan and from 50 to 70% released pectin, respectively, after digestion). When milled fibers were included in individual food matrices, the release was reduced by protein and starch matrices (5% β‐glucan and 35% pectin released, respectively) and slowed by fat (45% β‐glucan and 60% pectin released). This may result in a too low or too late release in the upper small intestine to be able to interfere with macronutrient uptake. The method may be suitable for predicting the gastrointestinal release of soluble dietary fibers from food matrices in the development of healthy food products.