bluuebunny/crossref_metadata_2025_split huggingface dataset:
Characterising the asynchronous resurgence of common respiratory viruses following the COVID-19 pandemic
Authors: Zhao Chenkai , Zhang Tiantian , Guo Ling , Sun Shiqi , Miao Yumeng , Yung Chee Fu , Tomlinson Jane , Stolyarov Kirill , Shchomak Zakhar , Poovorawan Yong , Nokes David James , Muñoz-Almagro Carmen , Mandelboim Michal , Keck James W. , Langley Joanne Marie , Heikkinen Terho , Deng Jikui , Colson Philippe , Chakhunashvili Giorgi , Caballero Mauricio T. , Bont Louis , Feikin Daniel R. , Nair Harish , Wang Xin , Li You ,   Respiratory Virus Global Epidemiology Network, Abo Yara-Natalie , Daley Andrew , Waller Gregory , Danilenko Daria M. , Komissarov Andrey B. , Bandeira Teresa , Barreto Maria Rosário , Suntronwong Nongruthai , Pasittungkul Siripat , Katama Esther Nyadzua , Arranz Alba , Launes Cristian , Bassat Quique , Nemet Ital , Dobson Jennifer D. , Bi Jiajia , Deng Guangcheng , Boschi Céline , La Scola Bernard , Raoult Didier , Karseladze Irakli , Zakhashvili Khatuna , Tarkhan-Mouravi Olgha , Dvorkin Julia , Billard Marie N. 
Published: February 2025

Abstract
The COVID-19 pandemic and relevant non-pharmaceutical interventions (NPIs) interrupted the circulation of common respiratory viruses. These viruses demonstrated an unprecedented asynchronous resurgence as NPIs were relaxed. We compiled a global dataset from a systematic review, online surveillance reports and unpublished data from Respiratory Virus Global Epidemiology Network, encompassing 92 sites. We compared the resurgence timings of respiratory viruses within each site and synthesised differences in timings across sites, using a generalised linear mixed-effects model. We revealed a distinct sequential timing in the first post-pandemic resurgence: rhinovirus resurged the earliest, followed by seasonal coronavirus, parainfluenza virus, respiratory syncytial virus, adenovirus, metapneumovirus and influenza A virus, with influenza B virus exhibiting the latest resurgence. Similar sequential timing was observed in the second resurgence except influenza A virus caught up with metapneumovirus. The consistent asynchrony across geographical regions suggests that virus-specific characteristics, rather than location-specific factors, determining the relative timing of resurgence.
A paired dataset of multi-modal MRI at 3 Tesla and 7 Tesla with manual hippocampal subfield segmentations
Authors: Chu Lei , Ma Baoqiang , Dong Xiaoxi , He Yirong , Che Tongtong , Zeng Debin , Zhang Zihao , Li Shuyu 
Published: February 2025

Abstract
The hippocampus plays a critical role in memory and is prone to neural degenerative diseases. Its complex structure and distinct subfields pose challenges for automatic segmentation in 3 T MRI because of its limited resolution and contrast. While 7 T MRI offers superior anatomical details and better gray-white matter contrast, aiding in clearer differentiation of hippocampal structures, its use is restricted by high costs. To bridge this gap, algorithms synthesizing 7T-like images from 3 T scans are being developed, requiring paired datasets for training. However, the scarcity of such high-quality paired datasets, particularly those with manual hippocampal subfield segmentations as ground truth, hinders progress. Herein, we introduce a dataset comprising paired 3 T and 7 T MRI scans from 20 healthy volunteers, with manual hippocampal subfield annotations on 7 T T2-weighted images. This dataset is designed to support the development and evaluation of both 3T-to-7T MR image synthesis models and automated hippocampal segmentation algorithms on 3 T images. We assessed the image quality using MRIQC. The dataset is freely accessible on the Figshare+.
Analyse der Patientencharakteristika in der stationären Behandlung von
Verhaltenssüchten – eine explorative Studie
Authors: Gasser Cristina , Mutschler Jochen 
Published: February 2025

Zusammenfassung
Einleitung, Fragestellung Zur Behandlung von Verhaltenssüchten ist wenig klinische Forschung
vorhanden. Daher werden in dieser Studie die Patientencharakteristika aus den ersten 2 Jahren des
Therapiemodells der Privatklinik Meiringen beschrieben sowie Auffälligkeiten und Veränderungen im
psychischen Zustand der Patienten statistisch analysiert.
Methoden Insgesamt 49 Personen zwischen 18 und 64 Jahren wurden aus dem stationären Setting
eingeschlossen. Die Patientencharakteristika wurden mit deskriptiver Statistik dargestellt. Anhand
validierter Messinstrumente wurde der psychische Zustand der Patienten zum Eintritts- und
Austrittszeitpunkt erfasst und analysiert.
Resultate Die Analyse zeigte einerseits, dass alle Studienteilnehmenden neben der Verhaltenssucht
an anderen psychischen Komorbiditäten litten. Am häufigsten trat die Depression auf. Zudem variierte die
Verteilung und das Vorkommen der Komorbiditäten je nach Verhaltenssucht. Andererseits zeigte sich auch
eine deutliche Verbesserung der psychischen Belastung zwischen der Ersterhebung und der Letzterhebung
Schlussfolgerungen Die Studie gibt einen explorativen Einblick in Eigenheiten der
Patientencharakteristika im stationären Setting und einen Überblick ihres Komorbiditätsspektrums. Leider
verunmöglicht der retrospektive Charakter der Studie genauere Aussagen über die Wirksamkeit der
Therapie.
CT-Guided Occipital Condyle Biopsy: A Case Report and Review of the Literature
Authors: Morcet Delattre Thibaud , Voisin Steven , Rabeau Valentin , Rolland Yan 
Published: February 2025

AbstractMetastasis of breast cancer to the occipital condyle presents challenges in histopathologic diagnosis and treatment due to its difficult localization. A few surgical and radiological approaches have been described, with various level of complexity.The case presentation describes a 43-year-old woman with persistent occipital neuralgia, diagnosed with a lytic mass on the left occipital condyle via head magnetic resonance imaging. A computed tomography-guided biopsy confirmed breast carcinoma metastasis without any complication, highlighting the efficacy and safety of the posterior ascending occipital condyle approach for bone biopsies.
Imaging Findings in Amyloid Arthropathy of the Hip Joints: The Eyes Cannot See What the Mind Does Not Know
Authors: Ghonge Nitin P. , Goyal Nidhi , Jain Tanya , Baweja Pankaji 
Published: February 2025

AbstractAmyloid arthropathy is a rare but serious complication in patients with chronic renal failure with a history of prolonged hemodialysis. The underlying pathophysiology is the accumulation of beta-2 microglobulin in intra- and periarticular tissues, with consequent synovial thickening and erosions. Imaging-based diagnosis of amyloid arthropathy allows prompt clinical management and better patient outcomes. In view of vague clinical presentation and uncommon incidence, the radiologist is often the first one to suspect this complication. We hereby describe the case of a 66-year-old man with gradually progressive left hip pain for the past 6 months who was diagnosed to have bilateral amyloid arthropathy and was subsequently confirmed with computed tomography (CT) guided synovial biopsy. Amyloid arthropathy should be considered in patients with hip pain who are on long-term hemodialysis and present with suggestive findings on radiograph, CT, and magnetic resonance studies.
Insights into Duodenal Adenocarcinoma: Clinical Presentation, Survival Outcomes, and Treatment Trends—A Long-Term Follow-Up Study
Authors: Joekim Jason Fernandes , R.C Subhoth , Shetty Nishitha , Shet Dinesh 
Published: February 2025

Abstract
Introduction Duodenal adenocarcinoma (DA) is a rare and aggressive malignancy, representing less than 0.5% of all gastrointestinal cancers. It constitutes a significant portion (55.7%) of small bowel adenocarcinomas, most of which arise in the second part of the duodenum, followed by the third and fourth parts. Despite its rarity, DA presents substantial challenges in diagnosis and treatment due to its aggressive nature and often insidious onset.
Objectives The aim of the study is to investigate the clinical presentation, prognostic factors, survival outcomes, and treatment strategies in DA, with a focus on surgical and adjuvant therapeutic interventions. Additionally, the study aims to elucidate patterns of recurrence and identify areas for future research to optimize therapeutic approaches and enhance patient care.
Materials and Methods This retrospective observational study (2015–2023) analyzed patients aged 18 to 90 years with DA. Data from case sheets, laboratory investigations, and medication charts were reviewed. This study aims to explain demographic characteristics, clinical presentations, treatment trends, and survival outcomes to improve therapeutic strategies and patient care in DA patients, excluding other gastrointestinal cancers
Results The study examined 10 cases of DA diagnosed between 2015 and 2023. The patient cohort had an equal gender distribution, with ages ranging from 53 to 83 years. Chief presenting symptoms included abdominal pain (90%) and vomiting (50%). Tumor markers were elevated in 40% of patients. Tumor locations predominantly included the D2 region. Three patients underwent Whipple's surgery and three received chemotherapy with curative intent.
Conclusion The study highlights the challenges associated with DA, including its rare incidence, clinical presentations, and variable treatment outcomes. Surgical interventions such as the Whipple procedure and adjuvant chemotherapy show promise in improving survival rates. Further studies with larger cohorts are essential to better understand the disease, refine therapeutic strategies formulate separate guidelines for DA, and enhance patient outcomes.
Clinical trial registry number: N/A.
Stochastic resonance in an underdamped Duffing bistable system embedded with overdamped feedback control for rolling bearing fault detection
Authors: Zhang Jinfeng , Peng Junling , Li Jimeng , Meng Zong 
Published: February 2025

Abstract
Research shows that multi-system synergetic stochastic resonance (SR) can obtain preferable performance for weak signal detection than a single SR system. However, how to design or select suitable multi-system synergetic mode remains a challenge. Therefore, an underdamped Duffing bistable SR system embedded with overdamped feedback control is constructed to boost the poor detection effect of weak signals by a single resonant system. Firstly, SR phenomenon in the underdamped Duffing bistable system embedded with overdamped feedback control is analyzed. Through the information exchange between the two subsystems and the series-parallel relationship of multiple integrals, it is feasible to enhance the noise utilization as well as to obtain a larger output signal-to-noise ratio. Secondly, the effects of feedback and damping coefficients on the resonant system are investigated, and an adaptive multi-parameter optimization SR algorithm is put forward in combination with gray wolf optimization algorithm to detect weak signals in a highly noisy background. Finally, vibration data of two faulty bearings is applied in the analysis of the investigated algorithm, and the results of comparison show that the spectral peak corresponding to the characteristic frequency of the output signal derived from the investigated method is more prominent, which effectively promotes the detection performance of bearing faults.
First observations of edge instabilities in strongly shaped negative triangularity plasmas on DIII-D
Authors: Cote Tyler , Yu Guanying , Nelson Andrew Oakleigh , Leuthold Nils , Richner Nathan Jordan , Stewart Samuel David , Khabanov Filipp , Zhu Yilun , Ebrahimi Fatima , King Jacob R , Paz-Soldan Carlos , Schmitz Lothar , Thome Kathreen E , Austin Max E , Scotti Filippo 
Published: February 2025

Abstract
Throughout the 2023 DIII-D negative triangularity campaign, unexpected magnetic fluctuations indicative of an edge localized instability were observed in the majority of strongly shaped (−0.55 ≤ δ ≤ −0.45) discharges. Moreover, these same fluctuations were found to be absent in weaker NT plasma shapes. Based on a database study, three separate mode behaviors are observed based primarily on the edge safety factor q95 and normalized plasma beta βN. The main regime is the bursty state, in which short (∼ 5 ms) magnetic bursts occur every 5 − 10 ms. Each burst drives a small reduction in the edge electron temperature (Te) as measured by electron cyclotron emissions (ECE), which then rapidly recovers between the bursts. The quiescent regime appears to have similar governing mechanics as the bursty regime, but with multiple unique mode signatures observed in the magnetics. These additional modes greatly reduces the bursty nature of the plasma. Finally, a saturated state is observed in a number of discharges, particularly at early time slices. The saturated regime is often short lived (maximum 500 ms), but can have a large impact on the dynamics of the&#xD;plasma edge region, causing significant drops in electron temperature as observed in the ECE diagnostic. 2D electron cyclotron emission imaging (ECE-I) is utilized, showing large kink-like perturbations localized near the LCFS that extend into the SOL indicative of an external kink behavior. Additionally, evidence of phase mixing and observed tearing-parity perturbations localized near the edge rational surfaces are observed in the quiescent regime plasmas. The various modes do not appear to have a large impact on global confinement, but may play a role in regulating the transport of the NT edge and the observed edge gradients.
Roles of Hormones in Regulating Root Growth-Water Interactions
Authors: Sharma Shivam , Bennett Malcolm J , Mehra Poonam 
Published: February 2025

Abstract
Water stress presents a critical challenge affecting plant growth and agricultural productivity, with drought alone causing substantial yield losses. Roots serve as the primary site for water uptake, enabling plants to detect water stress by sensing changes in soil moisture levels. This initial perception prompts roots to initiate a spectrum of adaptive responses at morphological, anatomical, and biochemical levels. In addition to coping with severe water stress conditions like drought, roots also respond to microscale variations in water availability within the rhizosphere as they navigate through soil, exhibiting responses such as hydrotropism, xerobranching, and hydropatterning. These adaptive responses are orchestrated by dynamic and sophisticated sensing and signalling mechanisms mediated by plant hormones at the cellular level. This review explores recent advances in our understanding of root responses to water stress, emphasizing the hormonal mechanisms underpinning these adaptations. Furthermore, it outlines future perspectives aimed at enhancing crop resilience to water stress through improved understanding and manipulation of root-water interactions.
FEASTS: The fate of gas and star formation in interacting galaxies
Authors: Wang Shun , Wang Jing , Lee-Waddell Karen , Yang Dong , Lin Xuchen , Staveley-Smith Lister 
Published: February 2025

Abstract
We use H i data from the FAST Extended Atlas of Selected Targets Survey (FEASTS) to study the interplay between gas and star formation of galaxies in interacting systems. We build control and mock H i disks and parameterize H i disorder by a series of disorder parameters, describing the piling, clumpiness and expansion of H i. We find that interacting galaxies have higher H i disorder described by almost all disorder parameters. Systems with comparable stellar masses and small relative velocities tend to have stronger expansion and clumpiness of H i. At a given stellar mass, decreased H i and total neutral gas mass and suppressed star formation rate of secondary galaxies are correlated with most disorder parameters. For primary galaxies, H i and total neutral gas deficiency correlate with more H i piling at two ends of the system outside H i disks but not with the expansion or clumpiness of H i. We also find that the H i surface densities of both primary and secondary galaxies are lower within the H i disks and higher outside compared to the control galaxies. Our results suggest that while all the disorder parameters quantify the interaction strength almost equally well, they have different sensitivities in tracing star formation rate and gas mass enhancements. They also imply that while gas removal likely dominates the tidal effects on secondary galaxies, primary galaxies experience more complex situation that are possibly related to gas depletion and accretion happening at different interaction stages.
On the varieties of conscious experiences: Altered Beliefs Under Psychedelics (ALBUS)
Authors: Safron Adam , Juliani Arthur , Reggente Nicco , Klimaj Victoria , Johnson Matthew 
Published: February 2025

Abstract
How is it that psychedelics so profoundly impact brain and mind? According to the model of “Relaxed Beliefs Under Psychedelics” (REBUS), 5-HT2a agonism is thought to help relax prior expectations, thus making room for new perspectives and patterns. Here, we introduce an alternative (but largely compatible) perspective, proposing that REBUS effects may primarily correspond to a particular (but potentially pivotal) regime of very high levels of 5-HT2a receptor agonism. Depending on both a variety of contextual factors and the specific neural systems being considered, we suggest opposite effects may also occur in which synchronous neural activity becomes more powerful, with accompanying “Strengthened Beliefs Under Psychedelics” (SEBUS) effects. Such SEBUS effects are consistent with the enhanced meaning-making observed in psychedelic therapy (e.g. psychological insight and the noetic quality of mystical experiences), with the imposition of prior expectations on perception (e.g. hallucinations and pareidolia), and with the delusional thinking that sometimes occurs during psychedelic experiences (e.g. apophenia, paranoia, engendering of inaccurate interpretations of events, and potentially false memories). With “Altered Beliefs Under Psychedelics” (ALBUS), we propose that the manifestation of SEBUS vs. REBUS effects may vary across the dose–response curve of 5-HT2a signaling. While we explore a diverse range of sometimes complex models, our basic idea is fundamentally simple: psychedelic experiences can be understood as kinds of waking dream states of varying degrees of lucidity, with similar underlying mechanisms. We further demonstrate the utility of ALBUS by providing neurophenomenological models of psychedelics focusing on mechanisms of conscious perceptual synthesis, dreaming, and episodic memory and mental simulation.
Recent stabilization of agricultural non-CO2 greenhouse gas emissions in China
Authors: Gao Yuanyi , Li Zimeng , Hong Songbai , Yu Lijun , Li Shihua , Wei Jing , Chang Jinfeng , Zhang Yao , Zhang Wen , Yuan Wenping , Wang Xuhui 
Published: February 2025

Abstract
Agriculture emerges as a prominent contributor to CH4 and N2O emissions in China. However, estimates of these two non-CO2 greenhouse gases (GHGs) remain poorly constrained, hindering a precise understanding of their spatiotemporal dynamics and the development of effective mitigation strategies. Here, we established a consistent estimation framework that integrates emission factor methods, data-driven models and process-based biogeochemical models, to identify the magnitudes, spatial variations, and long-term trends of agricultural non-CO2 GHG emissions in mainland China from 1980 to 2023. Over the study period, the average total agricultural non-CO2 GHG emissions amounted to 722.5 ± 102.3 Tg CO2-eq yr−1, with livestock CH4, cropland CH4, cropland N2O and livestock N2O contributing 41% (297.4 ± 64.3 Tg CO2-eq yr−1), 31% (225.0 ± 69.6 Tg CO2-eq yr−1), 18% (130.6 ± 9.4 Tg CO2-eq yr−1) and 10% (69.4 ± 20.2 Tg CO2-eq yr−1), respectively. Approximately 70% of these emissions were concentrated in the eastern region beyond the Hu Line, with emission hotspots identified in South-central China, East China, and the Sichuan Basin. Our analysis revealed three distinct temporal stages of total emissions during the study period: rapid growth (1980–late 1990s), slow growth (late 1990s–middle 2010s), and a stabilization stage (since the middle 2010s). These stages reflect the evolving trajectory of agriculture in China, from the expansion of agricultural yields, to the transformation of agricultural practices, and ultimately the pursuit of sustainable development. However, the temporal trajectory of emissions varied significantly across different regions, highlighting divergent levels of agricultural development. This study presents a comprehensive, gridded, and consistent estimate of agricultural non-CO2 GHG emissions in China, offering valuable insights for policymakers to develop tailored strategies that adapt to local conditions, enabling effective emission reduction measures.
Can treatment expectations or treatment itself in patients with arthralgia suspicious for progression to rheumatoid arthritis improve illness perceptions?
Authors: van Griethuysen Simonetta R G , Dumoulin Quirine A , van Mulligen Elise , van der Helm-van Mil Annette H M 
Published: February 2025

Abstract

Objectives
Negative illness perceptions(IPs) are associated with poorer disease-outcomes in rheumatoid arthritis(RA). Unfortunately, IPs are generally stable in established RA. We hypothesized that IPs, especially in the cognitive domain, are modifiable in arthralgia-at-risk of RA. We aimed to study if receiving DMARD-treatment, or the offer of DMARD-treatment associates with more positive IPs in patients with clinically-suspect-arthralgia(CSA).

Methods
The population studied were CSA-patients to which a wait-and-see approach was adopted without offering DMARD-treatment, or patients were offered DMARD-treatment via the TREAT EARLIER-trial and subsequently randomized to receive methotrexate or placebo. IP was assessed using the Brief-Illness-Perception-Questionnaire(BIPQ), covering cognitive, emotional and comprehensibility domains. The effect of DMARD-treatment on IPs over time was studied by comparing the 2-year-course of BIPQs of patients receiving methotrexate or placebo. The effect of offering DMARD-treatment was examined by comparing the BIPQs of CSA-patients in the trial with those undergoing a 'wait-and-see'-policy.

Results
In total 375 CSA-patients were studied, of which 236 of the TREAT EARLIER-trial and 139 with a wait-and-see approach. Patients who received treatment showed sustained improvements in IPs over time compared with placebo in four cognitive domains: experience of physical complaints(p= 0.040), the illness’ influence on life (p= 0.001), treatment-effectiveness(p= 0.041) and disease-duration (p= 0.045). Comparison at baseline showed that CSA-patients to whom treatment was offered had more confidence in treatment (p&lt; 0.001) and tented to have a deeper understanding of their disease (p= 0.054).

Conclusion
Both the prospect of and DMARD-treatment itself improved IPs in CSA, mainly in cognitive domains. These data suggest CSA as a suitable time period for influencing IPs’, which may provide possibilities to improve disease outcomes in patients developing RA.