bluuebunny/crossref_metadata_2025_split huggingface dataset:
Cavity-enhanced single artificial atoms in silicon
Authors: Saggio Valeria , Errando-Herranz Carlos , Gyger Samuel , Panuski Christopher , Prabhu Mihika , De Santis Lorenzo , Christen Ian , Ornelas-Huerta Dalia , Raniwala Hamza , Gerlach Connor , Colangelo Marco , Englund Dirk 
Published: June 2024

AbstractArtificial atoms in solids are leading candidates for quantum networks, scalable quantum computing, and sensing, as they combine long-lived spins with mobile photonic qubits. Recently, silicon has emerged as a promising host material where artificial atoms with long spin coherence times and emission into the telecommunications band can be controllably fabricated. This field leverages the maturity of silicon photonics to embed artificial atoms into the world’s most advanced microelectronics and photonics platform. However, a current bottleneck is the naturally weak emission rate of these atoms, which can be addressed by coupling to an optical cavity. Here, we demonstrate cavity-enhanced single artificial atoms in silicon (G-centers) at telecommunication wavelengths. Our results show enhancement of their zero phonon line intensities along with highly pure single-photon emission, while their lifetime remains statistically unchanged. We suggest the possibility of two different existing types of G-centers, shedding new light on the properties of silicon emitters.
Observation of Boyer-Wolf Gaussian modes
Authors: Tschernig Konrad , Guacaneme David , Mhibik Oussama , Divliansky Ivan , Bandres Miguel A. 
Published: June 2024

AbstractStable laser resonators support three fundamental families of transverse modes: the Hermite, Laguerre, and Ince Gaussian modes. These modes are crucial for understanding complex resonators, beam propagation, and structured light. We experimentally observe a new family of fundamental laser modes in stable resonators: Boyer-Wolf Gaussian modes. By studying the isomorphism between laser cavities and quadratic Hamiltonians, we design a laser resonator equivalent to a quantum two-dimensional anisotropic harmonic oscillator with a 2:1 frequency ratio. The generated Boyer-Wolf Gaussian modes exhibit a parabolic structure and show remarkable agreement with our theoretical predictions. These modes are also eigenmodes of a 2:1 anisotropic gradient refractive index medium, suggesting their presence in any physical system with a 2:1 anisotropic quadratic potential. We identify a transition connecting Boyer-Wolf Gaussian modes to Weber nondiffractive parabolic beams. These new modes are foundational for structured light, and open exciting possibilities for applications in laser micromachining, particle micromanipulation, and optical communications.
ATP biosensor reveals microbial energetic dynamics and facilitates bioproduction
Authors: Mu Xinyue , Evans Trent D. , Zhang Fuzhong 
Published: June 2024

AbstractAdenosine-5’-triphosphate (ATP), the primary energy currency in cellular processes, drives metabolic activities and biosynthesis. Despite its importance, understanding intracellular ATP dynamics’ impact on bioproduction and exploiting it for enhanced bioproduction remains largely unexplored. Here, we harness an ATP biosensor to dissect ATP dynamics across different growth phases and carbon sources in multiple microbial strains. We find transient ATP accumulations during the transition from exponential to stationary growth phases in various conditions, coinciding with fatty acid (FA) and polyhydroxyalkanoate (PHA) production in Escherichia coli and Pseudomonas putida, respectively. We identify carbon sources (acetate for E. coli, oleate for P. putida) that elevate steady-state ATP levels and boost FA and PHA production. Moreover, we employ ATP dynamics as a diagnostic tool to assess metabolic burden, revealing bottlenecks that limit limonene bioproduction. Our results not only elucidate the relationship between ATP dynamics and bioproduction but also showcase its value in enhancing bioproduction in various microbial species.
Adult microglial TGFβ1 is required for microglia homeostasis via an autocrine mechanism to maintain cognitive function in mice
Authors: Bedolla Alicia , Wegman Elliot , Weed Max , Stevens Messiyah K. , Ware Kierra , Paranjpe Aditi , Alkhimovitch Anastasia , Ifergan Igal , Taranov Aleksandr , Peter Joshua D. , Gonzalez Rosa Maria Salazar , Robinson J. Elliott , McClain Lucas , Roskin Krishna M. , Greig Nigel H. , Luo Yu 
Published: June 2024

AbstractWhile TGF-β signaling is essential for microglial function, the cellular source of TGF-β1 ligand and its spatial regulation remains unclear in the adult CNS. Our data supports that microglia but not astrocytes or neurons are the primary producers of TGF-β1 ligands needed for microglial homeostasis. Microglia-Tgfb1 KO leads to the activation of microglia featuring a dyshomeostatic transcriptome that resembles disease-associated, injury-associated, and aged microglia, suggesting microglial self-produced TGF-β1 ligands are important in the adult CNS. Astrocytes in MG-Tgfb1 inducible (i)KO mice show a transcriptome profile that is closely aligned with an LPS-associated astrocyte profile. Additionally, using sparse mosaic single-cell microglia KO of TGF-β1 ligand we established an autocrine mechanism for signaling. Here we show that MG-Tgfb1 iKO mice present cognitive deficits, supporting that precise spatial regulation of TGF-β1 ligand derived from microglia is required for the maintenance of brain homeostasis and normal cognitive function in the adult brain.
Persistent activity of aerobic methane-oxidizing bacteria in anoxic lake waters due to metabolic versatility
Authors: Schorn Sina , Graf Jon S. , Littmann Sten , Hach Philipp F. , Lavik Gaute , Speth Daan R. , Schubert Carsten J. , Kuypers Marcel M. M. , Milucka Jana 
Published: June 2024

AbstractLacustrine methane emissions are strongly mitigated by aerobic methane-oxidizing bacteria (MOB) that are typically most active at the oxic-anoxic interface. Although oxygen is required by the MOB for the first step of methane oxidation, their occurrence in anoxic lake waters has raised the possibility that they are capable of oxidizing methane further anaerobically. Here, we investigate the activity and growth of MOB in Lake Zug, a permanently stratified freshwater lake. The rates of anaerobic methane oxidation in the anoxic hypolimnion reached up to 0.2 µM d−1. Single-cell nanoSIMS measurements, together with metagenomic and metatranscriptomic analyses, linked the measured rates to MOB of the order Methylococcales. Interestingly, their methane assimilation activity was similar under hypoxic and anoxic conditions. Our data suggest that these MOB use fermentation-based methanotrophy as well as denitrification under anoxic conditions, thus offering an explanation for their widespread presence in anoxic habitats such as stratified water columns. Thus, the methane sink capacity of anoxic basins may have been underestimated by not accounting for the anaerobic MOB activity.
A trait-based root acquisition-defence-decomposition framework in angiosperm tree species
Authors: Zheng Jiajia , Freschet Grégoire T. , Tedersoo Leho , Li Shenggong , Yan Han , Jiang Lei , Wang Huimin , Ma Ning , Dai Xiaoqin , Fu Xiaoli , Kou Liang 
Published: June 2024

AbstractTo adapt to the complex belowground environment, plants make trade-offs between root resource acquisition and defence ability. This includes forming partnerships with different types of root associating microorganisms, such as arbuscular mycorrhizal and ectomycorrhizal fungi. These trade-offs, by mediating root chemistry, exert legacy effects on nutrient release during decomposition, which may, in turn, affect the ability of new roots to re-acquire resources, thereby generating a feedback loop. However, the linkages at the basis of this potential feedback loop remain largely unquantified. Here, we propose a trait-based root ‘acquisition-defence-decomposition’ conceptual framework and test the strength of relevant linkages across 90 angiosperm tree species. We show that, at the plant species level, the root-fungal symbiosis gradient within the root economics space, root chemical defence (condensed tannins), and root decomposition rate are closely linked, providing support to this framework. Beyond the dichotomy between arbuscular mycorrhizal-dominated versus ectomycorrhizal-dominated systems, we suggest a continuous shift in feedback loops, from ‘high arbuscular mycorrhizal symbiosis-low defence-fast decomposition-inorganic nutrition’ by evolutionarily ancient taxa to ‘high ectomycorrhizal symbiosis-high defence-slow decomposition-organic nutrition’ by more modern taxa. This ‘acquisition-defence-decomposition’ framework provides a foundation for testable hypotheses on multidimensional linkages between species’ belowground strategies and ecosystem nutrient cycling in an evolutionary context.
Co-targeting JAK1/STAT6/GAS6/TAM signaling improves chemotherapy efficacy in Ewing sarcoma
Authors: Yu Le , Deng Yu , Wang Xiaodong , Santos Charlene , Davis Ian J. , Earp H. Shelton , Liu Pengda 
Published: June 2024

AbstractEwing sarcoma is a pediatric bone and soft tissue tumor treated with chemotherapy, radiation, and surgery. Despite intensive multimodality therapy, ~50% patients eventually relapse and die of the disease due to chemoresistance. Here, using phospho-profiling, we find Ewing sarcoma cells treated with chemotherapeutic agents activate TAM (TYRO3, AXL, MERTK) kinases to augment Akt and ERK signaling facilitating chemoresistance. Mechanistically, chemotherapy-induced JAK1-SQ phosphorylation releases JAK1 pseudokinase domain inhibition allowing for JAK1 activation. This alternative JAK1 activation mechanism leads to STAT6 nuclear translocation triggering transcription and secretion of the TAM kinase ligand GAS6 with autocrine/paracrine consequences. Importantly, pharmacological inhibition of either JAK1 by filgotinib or TAM kinases by UNC2025 sensitizes Ewing sarcoma to chemotherapy in vitro and in vivo. Excitingly, the TAM kinase inhibitor MRX-2843 currently in human clinical trials to treat AML and advanced solid tumors, enhances chemotherapy efficacy to further suppress Ewing sarcoma tumor growth in vivo. Our findings reveal an Ewing sarcoma chemoresistance mechanism with an immediate translational value.
A multi-kingdom collection of 33,804 reference genomes for the human vaginal microbiome
Authors: Huang Liansha , Guo Ruochun , Li Shenghui , Wu Xiaoling , Zhang Yue , Guo Shumin , Lv Ying , Xiao Zhen , Kang Jian , Meng Jinxin , Zhou Peng , Ma Jie , You Wei , Zhang Yan , Yu Hailong , Zhao Jixin , Huang Guangrong , Duan Zuzhen , Yan Qiulong , Sun Wen 
Published: June 2024

AbstractThe human vagina harbours diverse microorganisms—bacteria, viruses and fungi—with profound implications for women’s health. Genome-level analysis of the vaginal microbiome across multiple kingdoms remains limited. Here we utilize metagenomic sequencing data and fungal cultivation to establish the Vaginal Microbial Genome Collection (VMGC), comprising 33,804 microbial genomes spanning 786 prokaryotic species, 11 fungal species and 4,263 viral operational taxonomic units. Notably, over 25% of prokaryotic species and 85% of viral operational taxonomic units remain uncultured. This collection significantly enriches genomic diversity, especially for prevalent vaginal pathogens such as BVAB1 (an uncultured bacterial vaginosis-associated bacterium) and Amygdalobacter spp. (BVAB2 and related species). Leveraging VMGC, we characterize functional traits of prokaryotes, notably Saccharofermentanales (an underexplored yet prevalent order), along with prokaryotic and eukaryotic viruses, offering insights into their niche adaptation and potential roles in the vagina. VMGC serves as a valuable resource for studying vaginal microbiota and its impact on vaginal health.
Quantum squeezing in a nonlinear mechanical oscillator
Authors: Marti Stefano , von Lüpke Uwe , Joshi Om , Yang Yu , Bild Marius , Omahen Andraz , Chu Yiwen , Fadel Matteo 
Published: June 2024

AbstractMechanical degrees of freedom are natural candidates for continuous-variable quantum information processing and bosonic quantum simulations. However, these applications require the engineering of squeezing and nonlinearities in the quantum regime. Here we demonstrate squeezing below the zero-point fluctuations of a gigahertz-frequency mechanical resonator coupled to a superconducting qubit. This is achieved by parametrically driving the qubit, which results in an effective two-phonon drive. In addition, we show that the resonator mode inherits a nonlinearity from the off-resonant coupling with the qubit, which can be tuned by controlling the detuning. We, thus, realize a mechanical squeezed Kerr oscillator, in which we demonstrate the preparation of non-Gaussian quantum states of motion with Wigner function negativities and high quantum Fisher information. This shows that our results can also have applications in quantum metrology and sensing.
Neoadjuvant pembrolizumab, dabrafenib and trametinib in BRAFV600-mutant resectable melanoma: the randomized phase 2 NeoTrio trial
Authors: Long Georgina V. , Carlino Matteo S. , Au-Yeung George , Spillane Andrew J. , Shannon Kerwin F. , Gyorki David E. , Hsiao Edward , Kapoor Rony , Thompson Jake R. , Batula Iris , Howle Julie , Ch’ng Sydney , Gonzalez Maria , Saw Robyn P. M. , Pennington Thomas E. , Lo Serigne N. , Scolyer Richard A. , Menzies Alexander M. 
Published: June 2024

AbstractImmune checkpoint inhibitors and BRAF-targeted therapy each improve survival in melanoma. Immune changes early during targeted therapy suggest the mechanisms of each drug class could work synergistically. In the non-comparative, randomized, phase 2 NeoTrio trial, we investigated whether targeted therapy could boost the proportion of patients achieving long-term recurrence-free survival with neoadjuvant immunotherapy in resectable stage III BRAFV600-mutant melanoma. Sixty patients (42% females) were randomized to pembrolizumab alone (n = 20), sequential therapy (dabrafenib plus trametinib followed by pembrolizumab; n = 20) or concurrent (triple) therapy (n = 20), followed by surgery and adjuvant therapy. The primary outcome was pathological response; secondary outcomes included radiographic response, recurrence-free survival, overall survival, surgical outcomes, peripheral blood and tumor analyses and safety. The pathological response rate was 55% (11/20; including six pathological complete responses (pCRs)) with pembrolizumab, 50% (10/20; three pCRs) with sequential therapy and 80% (16/20; ten pCRs) with concurrent therapy, which met the primary outcome in each arm. Treatment-related adverse events affected 75–100% of patients during neoadjuvant treatment, with seven early discontinuations (all in the concurrent arm). At 2 years, event-free survival was 60% with pembrolizumab, 80% with sequential therapy and 71% with concurrent therapy. Recurrences after major pathological response were more common in the targeted therapy arms, suggesting a reduction in response ‘quality’ when targeted therapy is added to neoadjuvant immunotherapy. Risking the curative potential of immunotherapy in melanoma cannot be justified. Pending longer follow-up, we suggest that immunotherapy and targeted therapy should not be combined in the neoadjuvant setting for melanoma. ClinicalTrials.gov registration: NCT02858921.
Carbon dioxide fluxes in Alpine grasslands at the Nivolet Plain, Gran Paradiso National Park, Italy 2017–2023
Authors: Parisi Angelica , di Valdengo Francesca Avogadro , Baneschi Ilaria , Baronetti Alice , Boiani Maria Virginia , Catania Maurizio , Lenzi Sara , Magnani Marta , Mosca Pietro , Provenzale Antonello , Raco Brunella , Vivaldo Gianna , Giamberini Mariasilvia 
Published: June 2024

AbstractWe introduce a georeferenced dataset of Net Ecosystem Exchange (NEE), Ecosystem Respiration (ER) and meteo-climatic variables (air and soil temperature, air relative humidity, soil volumetric water content, pressure, and solar irradiance) collected at the Nivolet Plain in Gran Paradiso National Park (GPNP), western Italian Alps, from 2017 to 2023. NEE and ER are derived by measuring the temporal variation of CO2 concentration obtained by the enclosed chamber method. We used a customised portable non-steady-state dynamic flux chamber, paired with an InfraRed Gas Analyser (IRGA) and a portable weather station, measuring CO2 fluxes at a number of points (around 20 per site and per day) within five different sites during the snow-free season (June to October). Sites are located within the same hydrological basin and have different geological substrates: carbonate rocks (site CARB), gneiss (GNE), glacial deposits (GLA, EC), alluvial sediments (AL). This dataset provides relevant and often missing information on high-altitude mountain ecosystems and enables new comparisons with other similar sites, modelling developments and validation of remote sensing data.
Epidemiological exploration of the impact of bluetooth headset usage on thyroid nodules using Shapley additive explanations method
Authors: Zhou Nan , Qin Wei , Zhang Jia-Jin , Wang Yun , Wen Jian-Sheng , Lim Yang Mooi 
Published: June 2024

AbstractWith an increasing prevalence of thyroid nodules globally, this study investigates the potential correlation between the use of Bluetooth headsets and the incidence of thyroid nodules, considering the cumulative effects of non-ionizing radiation (NIR) emitted by these devices. In this study, we analyzed 600 valid questionnaires from the WenJuanXing platform using Propensity Score Matching (PSM) and the XGBOOST model, supplemented by SHAP analysis, to assess the risk of thyroid nodules. PSM was utilized to balance baseline characteristic differences, thereby reducing bias. The XGBOOST model was then employed to predict risk factors, with model efficacy measured by the area under the Receiver Operating Characteristic (ROC) curve (AUC). SHAP analysis helped quantify and explain the impact of each feature on the prediction outcomes, identifying key risk factors. Initially, 600 valid questionnaires from the WenJuanXing platform underwent PSM processing, resulting in a matched dataset of 96 cases for modeling analysis. The AUC value of the XGBOOST model reached 0.95, demonstrating high accuracy in differentiating thyroid nodule risks. SHAP analysis revealed age and daily Bluetooth headset usage duration as the two most significant factors affecting thyroid nodule risk. Specifically, longer daily usage durations of Bluetooth headsets were strongly linked to an increased risk of developing thyroid nodules, as indicated by the SHAP analysis outcomes. Our study highlighted a significant impact relationship between prolonged Bluetooth headset use and increased thyroid nodule risk, emphasizing the importance of considering health impacts in the use of modern technology, especially for devices like Bluetooth headsets that are frequently used daily. Through precise model predictions and variable importance analysis, our research provides a scientific basis for the formulation of public health policies and personal health habit choices, suggesting that attention should be paid to the duration of Bluetooth headset use in daily life to reduce the potential risk of thyroid nodules. Future research should further investigate the biological mechanisms of this relationship and consider additional potential influencing factors to offer more comprehensive health guidance and preventive measures.
When population growth intensifies intergroup competition, female colobus monkeys free-ride less
Authors: Arseneau-Robar T. Jean , Teichroeb Julie A. , Macintosh Andrew J. J. , Saj Tania L. , Glotfelty Emily , Lucci Sara , Sicotte Pascale , Wikberg Eva C. 
Published: June 2024

AbstractIntergroup aggression often results in the production of public goods, such as a safe and stable social environment and a home range containing the resources required to survive and reproduce. We investigate temporal variation in intergroup aggression in a growing population of colobus monkeys (Colobus vellerosus) to ask a novel question: “Who stepped-up to produce these public goods when doing so became more difficult?”. Both whole-group encounters and male incursions occurred more frequently as the population grew. Males and females were both more likely to participate in whole-group encounters when monopolizable food resources were available, indicating both sexes engaged in food defence. However, only females increasingly did so as the population grew, suggesting that it was females who increasingly produced the public good of home range defence as intergroup competition intensified. Females were also more active in male incursions at high population densities, suggesting they increasingly produced the public good of a safe and stable social environment. This is not to say that males were chronic free-riders when it came to maintaining public goods. Males consistently participated in the majority of intergroup interactions throughout the study period, indicating they may have lacked the capacity to invest more time and effort.
A flexible dual-band 4 × 4 MIMO antenna for 5G mm-wave 28/38 GHz wearable applications
Authors: Tiwari Rakesh N. , Sharma Deepti , Singh Prabhakar , Kumar Pradeep 
Published: June 2024

AbstractThis paper presents a novel, dual-band, four-port multi-input–multi-output (MIMO) antenna for 28/38 GHz millimeter wave 5G wearable applications. In the proposed work, we have used a novel design approach to get the dual-band behavior from a MIMO design with a small footprint of 18 × 8.5 × 0.25 mm3. For this purpose, each MIMO element is designed as a composite form of a circular and elliptical structure connected with a narrow strip and fed by a tapered feedline. The peak realized gains and total efficiencies of the antenna, evaluated in free space, are 4.15 dBi, 7.73 dBi and 80.13%, 85.44% at 28 GHz and 38 GHz frequencies, respectively. To appraise the thorough behavior of the MIMO antenna, we have evaluated all the parameters of the antenna: Envelope Correlation Coefficient (ECC), Diversity Gain (DG), Mean Effective Gain (MEG), Channel Capacity Loss (CCL), and Total Active Reflection Coefficient (TARC), and found them satisfactory. Channel capacity of the antenna at SNR = 20 dB is found to be 21.61 bps/Hz. For wearable applications, the proposed 4-port MIMO antenna is designed on a flexible Rogers 3003 substrate, and the performance is checked by evaluating bending analysis. The safety of the antenna is verified by analyzing the 1 g/10 g SAR at 28/38 GHz and the corresponding average SAR values are 0.11/0.08 W/kg and 0.05/0.04 W/kg, respectively. All the average SAR values for the proposed MIMO antenna are within the acceptable limits according to FCC/ICNIRP standards.