bluuebunny/crossref_metadata_2025_split huggingface dataset:
A New Human DSG2-Transgenic Mouse Model for Studying the Tropism and Pathology of Human Adenoviruses
Authors: Wang Hongjie , Beyer Ines , Persson Jonas , Song Hui , Li ZongYi , Richter Maximilian , Cao Hua , van Rensburg Ruan , Yao Xiaoying , Hudkins Kelly , Yumul Roma , Zhang Xiao-Bing , Yu Mujun , Fender Pascal , Hemminki Akseli , Lieber André 
Published: March 2012

ABSTRACTWe have recently reported that a group of human adenoviruses (HAdVs) uses desmoglein 2 (DSG2) as a receptor for infection. Among these are the widely distributed serotypes HAdV-B3 and HAdV-B7, as well as a newly emerged strain derived from HAdV-B14. These serotypes do not infect rodent cells and could not up until now be studied in small-animal models. We therefore generated transgenic mice containing the human DSG2 locus. These mice expressed human DSG2 (hDSG2) at a level and in a pattern similar to those found for humans and nonhuman primates. As an initial application of hDSG2-transgenic mice, we used a green fluorescent protein (GFP)-expressing HAdV-B3 vector (Ad3-GFP) and studied GFP transgene expression by quantitative reverse transcription-PCR (qRT-PCR) and immunohistochemistry subsequent to intranasal and intravenous virus application. After intranasal application, we found efficient transduction of bronchial and alveolar epithelial cells in hDSG2-transgenic mice. Intravenous Ad3-GFP injection into hDSG2-transgenic mice resulted in hDSG2-dependent transduction of epithelial cells in the intestinal and colon mucosa. Our findings give an explanation for clinical symptoms associated with infection by DSG2-interacting HAdVs and provide a rationale for using Ad3-derived vectors in gene therapy.
APOBEC3A, APOBEC3B, and APOBEC3H Haplotype 2 Restrict Human T-Lymphotropic Virus Type 1
Authors: Ooms Marcel , Krikoni Aikaterini , Kress Andrea K. , Simon Viviana , Münk Carsten 
Published: March 2012

ABSTRACT

The human APOBEC3 family consists of seven cytidine deaminases (A3A to A3H), some of which display potent antiretroviral activity against HIV-1 and other retroviruses. Studies that analyzed the effect of A3G on human T-lymphotropic virus type 1 (HTLV-1) infectivity resulted in conflicting findings, and our knowledge of HTLV-1 restriction by other A3 proteins remains limited. Since HTLV-1, much like HIV, targets CD4
+
T cells, we hypothesized that A3 proteins other than A3G restrict HTLV-1. All seven human A3 proteins were tested in HTLV-1 reporter and HIV-1 infectivity assays. We show that A3A, A3B, and A3H haplotype 2 (A3H hapII) acted as potent inhibitors of HTLV-1. Wild-type HIV-1, in contrast, was restricted by A3B and A3H hapII, but not by A3A. Catalytic site mutants of A3A, A3B, and A3H hapII showed that A3A and A3B restriction of HTLV-1 required deaminase activity. However, A3H hapII acted in a deaminase-independent manner when restricting HTLV-1, while requiring deaminase activity for HIV-1 restriction. We also analyzed A3 editing of HTLV-1 in five T-cell lines obtained from HTLV-1-infected patients. These cell lines contained extensively edited HTLV-1 sequences with G-to-A mutations in dinucleotide contexts suggestive of APOBEC3 mutagenesis. Comparison of the A3-induced mutations from reporter cells and the patient-derived cell lines indicate that A3G but also other A3 members, possibly A3A and A3B, affect HTLV-1
in vivo
. Taken together, our data indicate that HTLV-1 is a likely target for multiple A3 proteins.
Identical Consensus Sequence and Conserved Genomic Polymorphism of Hepatitis E Virus during Controlled Interspecies Transmission
Authors: Bouquet Jerome , Cheval Justine , Rogée Sophie , Pavio Nicole , Eloit Marc 
Published: March 2012

ABSTRACT
High-throughput sequencing of bile and feces from two pigs experimentally infected with human hepatitis E virus (HEV) of genotype 3f revealed the same full-length consensus sequence as in the human sample. Twenty-nine percent of polymorphic sites found in HEV from the human sample were conserved throughout the infection of the heterologous host. The interspecies transmission of HEV quasispecies is the result of a genomic negative-selection pressure on random mutations which can be deleterious to the viral population. HEV intrahost nucleotide diversity was found to be in the lower range of other human RNA viruses but correlated with values found for zoonotic viruses. HEV transmission between humans and pigs does not seem to be modulated by host-specific mutations, suggesting that adaptation is mainly regulated by ecological drivers.
Reconstruction of Human Papillomavirus Type 16-Mediated Early-Stage Neoplasia Implicates E6/E7 Deregulation and the Loss of Contact Inhibition in Neoplastic Progression
Authors: Isaacson Wechsler Erin , Wang Qian , Roberts Ian , Pagliarulo Emilio , Jackson Deborah , Untersperger Christina , Coleman Nick , Griffin Heather , Doorbar John 
Published: March 2012

ABSTRACT

Infection with human papillomavirus type 16 (HPV-16) can lead to low- or high-grade squamous intraepithelial lesions (LSIL or HSIL). Here we show that these
in vivo
disease states can be replicated in raft cultures of early-pass HPV-16 episomal cell lines, at both the level of pathology and the level of viral gene expression. A reduced responsiveness to cell-cell contact inhibition and an increase in E6/E7 activity correlated closely with phenotype. Similar deregulation is likely to underlie the appearance of LSIL or HSIL soon after infection.
A qualitative evaluation of general practitioners' perceptions regarding access to medicines in New Zealand
Authors: Babar Zaheer-Ud-Din , Grover Piyush , Butler Rachael , Bye Lynne , Sheridan Janie 
Published: March 2012

ObjectiveThe objective of this study was to evaluate general practitioners' (GPs) perceptions regarding access to medicines in New Zealand.DesignQualitative.SettingPrimary care.ParticipantsGPs.Main outcome measuresGPs' views and perceptions.ResultsGPs were of the view that the current range of medicines available in New Zealand was reasonable; however, it was acknowledged that there were some drugs that patients were missing out on. When considering the range of subsidised medicines available in New Zealand, some GPs felt that there had been an improvement over recent years. It was highlighted that unexpected funding changes could create financial barriers for some patients and that administrative procedures and other complexities created barriers in receiving a subsidy for restricted medicines. GPs also reported problems with the availability and sole supply of certain medicines and claimed that switching from a branded medicine to its generic counterpart could be disruptive for patients.ConclusionsThe research concluded that although there were some issues with the availability of certain drugs, most GPs were satisfied with the broader access to medicines situation in New Zealand. This view is to contrary to the situation presented by the pharmaceutical industry. The issues around sole supply, the use of generic medicines and the administrative barriers regarding funding of medicines could be improved with better systems. The current work provides a solid account of what GPs see as the advantages and disadvantages of the current system and how they balance these demands in practice.
International collaboration: a retrospective study examining the survival of Irish citizens following lung transplantation in both the UK and Ireland
Authors: Adamali Huzaifa I , Judge Eoin P , Healy David , Nolke Lars , Redmond Karen C , Bartosik Waldemar , McCarthy Jim , Egan Jim J 
Published: March 2012

ObjectivePrior to 2005, Irish citizens had exclusively availed of lung transplantation services in the UK. Since 2005, lung transplantation has been available to these patients in both the UK and Ireland. We aimed to evaluate the outcomes of Irish patients undergoing lung transplantation in both the UK and Ireland.DesignWe retrospectively examined the outcome of Irish patients transplanted in the UK and Ireland. Lung allocation score (LAS) was used as a marker of disease severity.ResultsA total of 134 patients have undergone transplantation. 102 patients underwent transplantation in the UK and 32 patients in Ireland. In total, 52% were patients with cystic fibrosis, 19% had emphysema and 15% had idiopathic pulmonary fibrosis. In Ireland, 44% of the patients suffered from idiopathic pulmonary fibrosis, 31% had emphysema and 16% had cystic fibrosis. A total of 96 double sequential transplants and 38 single transplants have been performed. LAS of all patients undergoing lung transplantation was 37.8 (±1.02). The mean LAS for patients undergoing lung transplantation in Ireland was 44.7 (±3.1), and 35 (±0.4) for patients undergoing lung transplantation in the UK (p<0.05). The 5-year survival of all Irish citizens who had undergone lung transplantation was 73%. The 5-year survival of Irish patients transplanted in the UK was 69% and in Ireland was 91% and 73% at 5.01 years.ConclusionsInternational collaboration can be achieved, as evidenced by the favourable outcomes seen in Irish citizens who undergo lung transplantation in both the UK and Ireland. Irish citizens undergoing lung transplantation in Ireland have a higher LAS score. Despite excellent outcomes, an intention-to-treat analysis of the treatment utility (transplant) indicates the limited effectiveness of lung transplantation in Ireland and emphasises the need for increased rates of lung transplantation.
Have the public's expectations for antibiotics for acute uncomplicated respiratory tract infections changed since the H1N1 influenza pandemic? A qualitative interview and quantitative questionnaire study
Authors: McNulty Cliodna , Joshi Puja , Butler Chris C , Atkinson Lou , Nichols Tom , Hogan Angela , French David 
Published: March 2012

ObjectiveTo investigate the effect of the H1N1 influenza pandemic on the public's expectations for a general practice consultation and antibiotic for acute respiratory illness.DesignMixed methods.ParticipantsQualitative interviews: 17 participants with acute respiratory tract infection (RTI) visiting English pharmacies. Face-to-face survey: about 1700 adults aged 15 years and older were recruited from households in England in January 2008, 2009 and 2011.ResultsThe qualitative data indicated that the general public had either forgotten about the ‘swine flu’ (H1N1 influenza) pandemic or it did not concern them as it had not affected them directly or affected their management of their current RTI illness. Between 2009 and 2011, we found that there was little or no change in people's expectations for antibiotics for runny nose, colds, sore throat or cough, but people's expectations for antibiotics for flu increased (26%–32%, p=0.004). Of the 1000 respondents in 2011 with an RTI in the previous 6 months, 13% reported that they took care of themselves without contacting their general practitioners and would not have done so before the pandemic, 9% reported that they had contacted their doctor's surgery and would not have done so before the pandemic and 0.6% stated that they had asked for antibiotics and would not have done so before the pandemic. In 2011, of 123 respondents with a young child (0–4 years) having an RTI in the previous 6 months, 7.4% requested antibiotics and would not have done so before the pandemic. Unprompted, 20% of respondents thought Tamiflu© (oseltamivir) was a vaccine.ConclusionsExpectations of the general public for a consultation or antibiotics with an RTI are similar now to before the H1N1 influenza pandemic; therefore, public antibiotic campaign messages and general practice advice to patients can remain unchanged. Parents with young children and those with personal experience of the H1N1 influenza are more likely to consult and will need more reassurance. The public need more education about Tamiflu©.
Number of cats and dogs in UK welfare organisations
Authors: Clark C. C. , Gruffydd‐Jones T. , Murray J. K. 
Published: March 2012

It is not known how many cats and dogs are admitted to welfare organisations annually. This study produced the first estimates of the size of this population. A questionnaire was mailed out to welfare organisations during 2010, followed by a postal/email reminder and requests to non‐responders for a telephone interview. The questionnaire covered areas including, the current number of cats and dogs being housed, how much of the year organisations were operating at full capacity as well as the number of cats and dogs admitted, rehomed and euthanased between January and December 2009. Responses were obtained from 54.8 per cent of organisations. Sixty‐six per cent of cat welfare organisations and 48 per cent of dog welfare organisations reported that they operated at full capacity for 12 months of the year. The number of cats and dogs entering UK welfare organisations during 2009 was estimated as 131,070 and 129,743, respectively. This highlights the scale of the work performed by welfare organisations in caring for and rehoming unwanted cats and dogs annually and emphasises the urgent need to address concerns over the considerable number of these animals. This study has also produced useful baseline data, which will be essential for monitoring population changes over time.
Theoretical study on the aging and reactivation mechanism of tabun-inhibited acetylcholinesterase by using the quantum mechanical / molecular mechanical method
Authors: Li Yanwei , Du Likai , Hu Yueming , Sun Xiaomin , Hu Jingtian 
Published: March 2012

The organophosphorous compound tabun is highly neurotoxic because of its irreversible inhibition on acetylcholinesterase (AChE). It is wildly used as a warfare agent in the military. In this work, the aging and reactivation mechanism of tabun-inhibited AChE were studied by using the quantum mechanical / molecular mechanical (QM/MM) method. Geometry optimization of the stationary points were performed at the B3LYP/6–31G(d) level. Single-point energies were computed at the B3LYP/6–311++G(d,p) level. On the basis of the QM/MM results, a conclusion that the C–O bond scission is caused by water attack on the ethoxy group in the aging mechanism can be drawn. The reactivation process initialed by the antidotes CH2NO–or HLÖ-7 consists of three elemental steps, the nucleophilic attack on the P atom by the antidote, the dephosphorylation process, and the decomposition of the antidote–tabun complex. The highest energy barriers of the aging reaction, CH2NO–-induced reactivation, and HLÖ-7-induced reactivation are 19.9, 20.0, and 14.8 kcal/mol (1 cal = 4.184 J), respectively. The relative lower overall energy barrier of HLÖ-7-induced reactivation compared with that of the aging reaction indicates that HLÖ-7 is able to reactivate tabun-inhibited AChE. In addition, whether a newly designed antidote is able to reactivate tabun-inhibited AChE can be examined by the inequation X < 19.9 kcal/mol,where X means the highest energy barrier of the reactivation reaction of the newly designed antidote.
Buffer capacity of heterogeneous chemical equilibria in natural waters
Authors: Povar Igor , Rusu Vasile 
Published: March 2012

A novel ion–molecular buffer approach for estimating buffer capacities for natural water – mineral equilibria has been developed. Using this approach, the buffer capacity for any component of the heterogeneous system can be assessed. A proportional relation between different capacities in relation to ions of the compound distributed between two phases has been found. The influence of major thermodynamic parameters, such as temperature, pH, and the main chemical component concentrations of natural waters upon system buffer capacities has been investigated. It is expected that this type of approach will help to predict long-term diminishing effects in natural waters as a remediation alternative. The obtained results are intended to provide users with a compulsory tool to set reliable limits of ion (including metal) levels in environmental systems.
Host–parasite distributions under changing climate:Tsuga heterophyllaandArceuthobium tsugensein Alaska
Authors: Barrett Tara M. , Latta Greg , Hennon Paul E. , Eskelson Bianca N.I. , Temesgen Hailemariam 
Published: March 2012

Dwarf mistletoes ( Arceuthobium species) influence many processes within forested ecosystems, but few studies have examined their distribution in relation to climate. An analysis of 1549 forested plots within a 14.5 million ha region of southeast Alaska provided strong indications that climate currently limits hemlock dwarf mistletoe ( Arceuthobium tsugense (Rosendahl) G.N. Jones) to a subset of the range of its primary tree host, western hemlock ( Tsuga heterophylla (Raf.) Sarg.), with infection varying from a high of 20% of trees at sea level to only 5% by 200 m elevation. Three types of modeling approaches (logistic, most similar neighbors, and random forests) were tested for the ability to simultaneously predict abundance and distribution of host and pathogen as a function of climate variables. Current distribution was explained well by logistic models using growing degree-days, indirect and direct solar radiation, rainfall, snowfall, slope, and minimum temperatures, although accuracy for predicting A. tsugense presence at a particular location was only 38%. For future climate scenarios (A1B, A2, and B1), projected increases for A. tsugense habitat over a century ranged from a low of 374% to a high of 757%, with differences between modeling approaches contributing more to uncertainty than differences between climate scenarios.
Isolation and identification of diazotrophic bacteria from internal tissues ofPinus contortaandThuja plicata
Authors: Bal Amandeep , Anand Richa , Berge Odile , Chanway Christopher P. 
Published: March 2012

Lodgepole pine ( Pinus contorta var. latifolia Engelm. ex S. Watson) and western red cedar ( Thuja plicata Donn ex D. Don) are capable of growing in soils that are severely nitrogen-limited. A rarely evaluated but possible nitrogen source for gymnosperms growing at nutrient poor sites is nitrogen fixation by endophytic bacteria. To investigate this possibility, we looked for nitrogen-fixing bacteria in surface-sterilized needle, stem, and root tissues of naturally regenerating lodgepole pine and western red cedar seedlings (2–4 years old) and trees (>20 years old) growing near Williams Lake, Chilliwack Lake, and Boston Bar, British Columbia, Canada. Ninety-nine bacterial isolates were obtained by plating surface-sterilized plant tissue extracts on tryptic soy agar (TSA) and combined carbon medium agar (CCMA), a nitrogen-free medium. Bacterial isolates were identified using gas chromatographic fatty acid methyl ester (GC-FAME) and 16S rRNA gene analyses and were evaluated for nitrogenase activity using an acetylene reduction assay. Representatives of the genera Bacillus and Paenibacillus dominated the culturable endophytic bacterial community in tissues of both tree species, with three Paenibacillus isolates and one Dyadobacter fermentans strain demonstrating consistently high acetylene-reduction activities. Our results raise the possibility that endophytic nitrogen fixation provides a supplementary nitrogen source for naturally regenerated lodgepole pine and western red cedar.
Risk, knowledge, and trust in managing forest insect disturbance
Authors: McFarlane Bonita L. , Parkins John R. , Watson David O.T. 
Published: March 2012

Understanding perceptions of risks, awareness, and trust in management agencies is critical to effective management of large-scale forest insect disturbance. In this study, we examined regional variation in public perceptions of risk, compared public and land managers’ perceptions, and examined knowledge and trust as factors in shaping public perceptions of a mountain pine beetle (MPB) ( Dendroctonus ponderosae Hopkins) infestation. Survey data were collected from residents (n = 1303) in three regions of Alberta and from land managers (n = 43) responsible for MPB management. Results showed that residents had moderate or great concern for MBP risks, they were not well informed about MPB, and they showed slight trust in the provincial government and forest industry to manage the beetle. There was regional variation in perceptions of risks, knowledge, and trust. Land managers were less concerned about nontimber effects and had higher trust than the public. A positive correlation between trust and risk perceptions appears to contradict the risk literature. This relationship may be influenced by an intervening effect of knowledge. These results call for more attention to the content of risk messaging and the effects of trust and knowledge on the general public who take up these messages.
Validity of Eight Integrated Healthcare Delivery Organizations' Administrative Clinical Data to Capture Breast Cancer Chemotherapy Exposure
Authors: Delate Thomas , Bowles Erin J. Aiello , Pardee Roy , Wellman Robert D. , Habel Laurel A. , Yood Marianne Ulcickas , Nekhlyudov Larissa , Goddard Katrina A. , Davis Robert L. , McCarty Catherine A. , Onitilo Adedayo A. , Feigelson Heather Spencer , Freml Jared , Wagner Edward 
Published: March 2012

Abstract
Background: Cancer Research Network (CRN) sites use administrative data to populate their Virtual Data Warehouse (VDW). However, information on VDW chemotherapy data validity is limited. The purpose of this study was to assess the validity of VDW chemotherapy data.
Methods: This was a retrospective cohort study of women ≥18 years with incident, invasive breast cancer diagnosed between January 1999 and December 2007. Pharmacy and procedure chemotherapy data were extracted from each site's VDW. Random samples of 50 patients stratified on trastuzumab, anthracyclines, and no chemotherapy exposure was selected from each site for detailed chart abstraction. Weighted sensitivities and specificities of VDW compared with abstracted data were calculated. Cumulative doses calculated from VDW data were compared with doses obtained from the medical chart review.
Results: The cohort included 13,497 patients with 6,456 (48%) chart review eligible. Patients in the sample (N = 400) had a mean age of 65 years. Trastuzumab, anthracycline, and other chemotherapy weighted sensitivities were 95%, 97%, and 100%, respectively; specificities were 99%, 99%, and 93%, respectively; positive predictive values were 96%, 99%, and 55%, respectively; and negative predictive values were 99%, 96%, and 100%. Trastuzumab and anthracyclines VDW mean doses were 873 and 386 mg, respectively, whereas abstracted mean doses were 1,734 and 369 mgs, respectively (R2 = 0.14, P &lt; 0.01 and R2 = 0.05, P = 0.03, respectively).
Conclusions: Sensitivities and specificities for CRN chemotherapy VDW data were high and dosages were correlated with chart information.
Impact: The findings support the use of CRN data in evaluating chemotherapy exposures and related outcomes. Cancer Epidemiol Biomarkers Prev; 21(4); 673–80. ©2012 AACR.