bluuebunny/crossref_metadata_2025_split huggingface dataset:
The Basic Ingredients of the North Atlantic Storm Track. Part I: Land–Sea Contrast and Orography
Authors: Brayshaw David James , Hoskins Brian , Blackburn Michael 
Published: April 2009

Abstract
Understanding and predicting changes in storm tracks over longer time scales is a challenging problem, particularly in the North Atlantic. This is due in part to the complex range of forcings (land–sea contrast, orography, sea surface temperatures, etc.) that combine to produce the structure of the storm track. The impact of land–sea contrast and midlatitude orography on the North Atlantic storm track is investigated through a hierarchy of GCM simulations using idealized and “semirealistic” boundary conditions in a high-resolution version of the Hadley Centre atmosphere model (HadAM3). This framework captures the large-scale essence of features such as the North and South American continents, Eurasia, and the Rocky Mountains, enabling the results to be applied more directly to realistic modeling situations than was possible with previous idealized studies. The physical processes by which the forcing mechanisms impact the large-scale flow and the midlatitude storm tracks are discussed. The characteristics of the North American continent are found to be very important in generating the structure of the North Atlantic storm track. In particular, the southwest–northeast tilt in the upper tropospheric jet produced by southward deflection of the westerly flow incident on the Rocky Mountains leads to enhanced storm development along an axis close to that of the continent’s eastern coastline. The approximately triangular shape of North America also enables a cold pool of air to develop in the northeast, intensifying the surface temperature contrast across the eastern coastline, consistent with further enhancements of baroclinicity and storm growth along the same axis.
Temporal–Spatial Distribution of Thin Moist Layers in the Midtroposphere over the Tropical Eastern Pacific
Authors: Otsuka Shigenori , Yoden Shigeo 
Published: April 2009

Abstract
The temporal–spatial distribution of thin moist layers in the midtroposphere over the tropical eastern Pacific is studied by data analyses of radiosonde soundings and downscaling numerical experiments with a regional model. Radiosonde soundings at San Cristóbal, Galápagos, show frequent existence of thin moist layers between 2 and 10 km in altitude, with a local minimum at 7–8 km. The downscaling experiments with global objective analyses are completed for 2005–06, September and December of 1999–2004, and March of 2000–04. The vertical distribution of thin moist layers has three local maxima at 5, 10, and 16 km, where bimodality of the frequency distribution of water vapor is evident. Between 4 and 7 km, an annual variation is dominant in the occurrence ratio of thin moist layers, which tend to appear in nonconvective regions. In boreal winter, the layers appear to the north of the intertropical convergence zone (ITCZ), whereas in boreal summer the layers appear in the equator-side of the ITCZ. Interannual variations of the appearance of thin moist layers are also studied in 1999–2006, based on the experiments for particular months (March, September, and December). The occurrence ratio is generally high in December and March and low in September. In La Niña years, the annual variation is smaller than that in El Niño years; the occurrence ratio is higher in boreal summer to the south of the ITCZ.
Predictions of Indian Ocean SST Indices with a Simple Statistical Model: A Null Hypothesis
Authors: Dommenget Dietmar , Jansen Malte 
Published: April 2009

Abstract
Several recent general circulation model studies discuss the predictability of the Indian Ocean dipole (IOD) mode, suggesting that it is predictable because of coupled ocean–atmosphere interactions in the Indian Ocean. However, it is not clear from these studies how much of the predictability is due to the response to El Niño. It is shown in this note that a simple statistical model that treats the Indian Ocean as a red noise process forced by tropical Pacific SST shows forecast skills comparable to those of recent general circulation model studies. The results also indicate that some of the eastern tropical Indian Ocean SST predictability in recent studies may indeed be beyond the skill of the simple model proposed in this note, indicating that dynamics in the Indian Ocean may have caused this improved predictability in this region. The model further indicates that the IOD index may be the least predictable index of Indian Ocean SST variability. The model is proposed as a null hypothesis for Indian Ocean SST predictions.
Comparison between the Large-Scale Environments of Moderate and Intense Precipitating Systems in the Mediterranean Region
Authors: Funatsu Beatriz M. , Claud Chantal , Chaboureau Jean-Pierre 
Published: April 2009

Abstract
A characterization of the large-scale environment associated with precipitating systems in the Mediterranean region, based mainly on NOAA-16 Advanced Microwave Sounding Unit (AMSU) observations from 2001 to 2007, is presented. Channels 5, 7, and 8 of AMSU-A are used to identify upper-level features, while a simple and tractable method, based on combinations of channels 3–5 of AMSU-B and insensitive to land–sea contrast, was used to identify precipitation. Rain occurrence is widespread over the Mediterranean in wintertime while reduced or short lived in the eastern part of the basin in summer. The location of convective precipitation shifts from mostly over land from April to August, to mostly over the sea from September to December. A composite analysis depicting large-scale conditions, for cases of either rain alone or extensive areas of deep convection, is performed for selected locations where the occurrence of intense rainfall was found to be important. In both cases, an upper-level trough is seen to the west of the target area, but for extreme rainfall the trough is narrower and has larger amplitude in all seasons. In general, these troughs are also deeper for extreme rainfall. Based on the European Centre for Medium-Range Weather Forecasts operational analyses, it was found that sea surface temperature anomalies composites for extreme rainfall are often about 1 K warmer, compared to nonconvective precipitation conditions, in the vicinity of the affected area, and the wind speed at 850 hPa is also stronger and usually coming from the sea.
Clinical significance of ABCB1 genotyping in oncology
Authors: Hamidovic Alma , Hahn Kristine , Kolesar Jill 
Published: April 2009

Background. P-glycoprotein (Pgp) is a drug efflux pump that transports natural products, including taxanes and other chemotherapeutic agents, from cells. Several frequent polymorphisms in ATP binding cassette gene B1 (ABCB1) may influence Pgp levels and drug efflux. The purpose of this review was to assess the clinical significance of ABCB1 polymorphisms in oncology. Methods. Peer-reviewed studies were identified through a search of PubMed/MEDLINE (1990—2008) and the ASCO abstracts (2003—2008) database. Included studies described clinical trials where ABCB1 genotyping was performed in patients with cancer. Search terms included ABCB1, Pgp, docetaxel, paclitaxel, irinotecan, imatinib, and anticancer agent. Studies were excluded if the manuscript was not available in English. Results. The influence of polymorphisms in ABCB1 2677G>T/A, 3435C>T, and 1236C>T and progression-free and overall survival in 309 patients from the Australian Ovarian Cancer Study treated with paclitaxel/carboplatin demonstrated that compared to homozygote GG carriers at 2677, women with the minor T/A alleles were significantly less likely to relapse following treatment. Other trials of ABCB1 genotyping in breast and prostate cancer patients receiving taxanes have shown inconsistent results. Pharmacokinetic studies where ABCB1 was genotyped and patients received irinotecan or imatinib have also shown inconsistent results. Conclusion. A number of commercially available drugs are substrates for Pgp, and the ABCB1-variant genotypes are frequent and functionally significant, which may have future implications for drug dosing.
REE partitioning between apatite and melt in a peralkaline volcanic suite, Kenya Rift Valley
Authors: MacDonald R. , Baginíski B. , Belkin H. E. , Dzieržanowski P. , Jeżak L. 
Published: April 2009

AbstractElectron microprobe analyses are presented for fluorapatite phenocrysts from a benmoreite-peralkaline rhyolite volcanic suite from the Kenya Rift Valley. The rocks have previously been well characterized petrographically and their crystallization conditions are reasonably well known. The REE contents in the M site increase towards the rhyolites, with a maximum britholite component of ~35 mol.%. Chondrite-normalized REE patterns are rather flat between La and Sm and then decrease towards Yb. Sodium and Fe occupy up to 1% and 4%, respectively, of the M site. The major coupled substitution is REE3+ + Si4+ ↔ Ca2+ + P5+. The substitution REE3+ + Na+ ↔ 2Ca2+has been of minor importance. The relatively large Fe contents were perhaps facilitated by the low fO2conditions of crystallization. Zoning is ubiquitous and resulted from both fractional crystallization and magma mixing. Apatites in some rhyolites are relatively Y-depleted, perhaps reflecting crystallization from melts which had precipitated zircon. Mineral/glass (melt) ratios for two rhyolites are unusually high, with maxima at Sm (762, 1123).
Crystal chemistry and location of hydrogen atoms in prehnite
Authors: Detrie T. A. , Ross N. L. , Angel R. J. , Welch M. D. 
Published: April 2009

AbstractThe structure of prehnite Ca2Al(AlSi3O10)(OH)2, including H positions, has been determined by a combination of single-crystal X-ray diffraction and neutron powder diffraction on four natural samples. The symmetry of the average structure with Al/Si disordered at the T2 siteis Pncm. However, for four of the crystals studied, numerous violations of the n- and c-glide reflection conditions indicate lower symmetry corresponding to space groups P2cm and P2/n and Al-Si ordered structures, possibly as domains of different symmetries and ordering within a single crystal. Time-of-flight neutron powder diffraction was carried out on a sample from Mali at 293 K and 2 K. The structure was refined in space group Pncm by Rietveld analysis. Although it was not possible to locate the missing H using the 293 K neutron data, these data were used to refine the H position located approximately by single-crystal XRD and to refine Uiso. For the 2 K neutron powder diffraction data, H was located directly by difference-Fourier synthesis and its refined position found to be in close agreement with that obtained by the combined XRD/neutron 293 K dataset.
Interstitial magmatic scapolite in glass-bearing crystalline nodules from the Kula Volcanic Province, Western Turkey
Authors: Smith G. C. , Holness M. B. , Bunbury J. M. 
Published: April 2009

AbstractScapolite oikocrysts, up to 3 cm in diameter, occur in cognate, cumulate nodules from the 2 Ma rift-related, alkali-basaltic Kula Volcanic Province in Western Turkey. Three scapolite-bearing nodules were found within deposits originating from two adjacent cones. They contain primocrysts of clinopyroxene, biotite, apatite and titanite, together with interstitial kaersutite, biotite, plagioclase and scapolite. Kula scapolites fall mid-way between the meionite (Ca4[Al6Si6O24]CO3) and marialite (Na4[Al3Si9O24]Cl) end-members (∼Me45—71). We believe this to be the first report of interstitial magmatic scapolite.
Cuspidine-sodalite natrocarbonatite from Oldoinyo Lengai, Tanzania: a novel hybrid carbonatite formed by assimilation of ijolite
Authors: Mitchell R. H. , Belton F. A. 
Published: April 2009

AbstractA unique hybrid natrocarbonatite, collected from the new ash cone of the volcano Oldoinyo Lengai. Tanzania in July 2008, consists of phenocrysts of nyerereite and gregoryite together with xenocrysts of clinopyroxene, nepheline and Ti-andradite set in a groundmass of cuspidine, sodalite, ferroan manganoan monticellite, K-Fe sulphide and manganoan titanian magnetite and gregoryite. The xenocrysts were not in equilibrium with the melt which formed their current host, as clinopyroxenes and Ti-andradite are mantled by cuspidine, and nepheline by sodalite and phlogopite—potassian kinoshitalite solid solutions. A microxenolith of ijolite exhibits similar reaction phenomena. The minerals of the xenocryst suite have similar compositions to plutonic ijolites found at Oldoinyo Lengai, and are thus considered to be derived by the fragmentation of such material in a previously contaminated natrocarbonatite melt. The latter, which has cuspidine, sodalite and monticellite as primary liquidus phases, is considered to have been formed by the complete assimilation of ijolitic material in a natrocarbonatite magma at depth in the volcano conduit. The occurrence of trace amounts of cuspidine, Fe-Mn-monticellite, K-Fe sulphide and Mn-Ti-spinel in recently erupted natrocarbonatites is ascribed to similar, but less extensive, assimilation of silicate material prior to their eruption.
Crystal structure of Ni-sorbed synthetic vernadite: a powder X-ray diffraction study
Authors: Grangeon S. , Lanson B. , Lanson M. , Manceau A. 
Published: April 2009

AbstractVernadite is a nanocrystalline turbostratic phyllomanganate containing Ni, and is widespread in surface environments and oceanic sediments. To improve our understanding of Ni uptake in this mineral, two series of analogues of vernadite (δ-MnO2) were prepared with Ni/Mn atomic ratios of 0.002—0.105 at pH4 and 0.002—0.177 at pH 7. Their structures were characterized using X-ray powder diffraction (XRD). The δ-MnO2 nano-crystals are essentially monolayers with coherent scattering domains sizes of ∼10 Å perpendicular to the layering and ∼55 Å within the layer plane. For Ni/Mn < 0.01, the layer charge deficit is apparently balanced entirely by interlayer Mn, Na and protons. At higher Ni/Mn, Ni occupies the same site as interlayer Mn above and below vacant sites within the MnO2 layer and at sites along the edges of the layer. However, the layer charge is balanced differently at the two pH values. At pH 4, Ni uptake is accompanied by a reduction in structural Na and protons, whereas interlayer Mn remains strongly bound to the layers. At pH 7, interlayer Mn is less strongly bound and is partially replaced by Ni. The results of this study also suggest that the number of vacant octahedral sites and multi-valent charge-copmpensating interlayer species are underestimated by the currently used structure models of δ-MnO2.
Complexly zoned niobian titanite from hedenbergite skarn at Písek, Czech Republic, constrained by substitutions Al(Nb,Ta)Ti—2, Al(F,OH)(TiO)—1 and SnTi—1
Authors: Cempírek J. , Houzar S. , Novák M. 
Published: April 2009

AbstractEuhedral crystals of complexly zoned niobian titanite (up to 0.3 mm) are enclosed in hedenbergite (Hd53—81Di15—43Jh3-5) and quartz from a hedenbergite vein skarn at Kamenne doly near Pisek, Czech Republic. They are associated with minor clinozoisite-epidote (Ps3—22), calcite, plagioclase (An95). scapolite (Me80—82), scheelite, pyrrhotite, fluorapatite, arsenopyrite, native bismuth and Bi,Te-minerals. The following textural and compositional subtypes were recognized: (I) Nb-rich titanite, (II) Nb-moderate titanite in the central zone, (III) Nb-poor, Sn-enriched titanite and (IV) Nb-poor, Al,F-rich titanite in the outer zone. The substitution Al(Nb,Ta)Ti—2 is dominant in subtypes I and II, the titanite subtype I being characterized by elevated contents of Al ≤ 0.257 atoms per formula unit (a.p.f.u.), Nb (≤ 0.161 a.p.f.u.) and Ta (≤ 0.037 a.p.f.u.). Amounts of Al, Nb and Ta in subtype II are smaller and more variable. The minor substitution SnTi—1 occurs chiefly in titanite subtype III with a content of Sn ≤ 0.039 a.p.f.u.. The substitution Al(F,OH)(TiO)_i is typical for titanite subtype IV exhibiting elevated contents of Al (s£ 0.221 a.p.f.u.), F (≤ 0.196 a.p.f.u.) and Fe (≤ 0.039 a.p.f.u.).The negative relationship of substitutions Al(F,OH)(TiO)_i vs. SnTi—1 and Al(Nb,Ta)Ti—1 is constrained chiefly by crystal structure rather than by the composition of parent medium alone. Textural relations suggest that the Nb-moderate titanite in the core zone and entire outer zone are products of fluids-induced dissolution-reprecipitation processes. The studied niobian titanite represents a new F-enriched type from a medium-grade, calc-silicate rock.
Omongwaite, Na2Ca5(SO4)6.3H2O, a new mineral from recent salt lake deposits, Namibia
Authors: Mees F. , Hatert F. , Rowe R. 
Published: April 2009

AbstractOmongwaite, Na2Ca5(SO4)6.3H2O, is a new mineral, found as inclusions in gypsum crystals in recent salt lake deposits at Omongwa pan, Namibia. It is monoclinic, with space group C2, a = 12.08(3) A, b = 6.96(1) Å, c = 6.39(2) Å, B = 90.2(3)°, V= 537(2) Å3, and Z = 1. The six strongest lines in the X-ray powder diffraction pattern [dobs. (Å), (I/I° meas), (hkl)] are: 6.028, (40), (110); 3.484, (29), (310); 3.019, (51), (400); 3.014, (100), (220); 2.824, (34), (1̄12); and 2.820, (65), (112). Electron microprobe analysis, recalculated on the basis of 3H2O per formula unit (p.f.u.), gave 56.16 wt.% SO3, 30.82 wt.% CaO, 5.25 wt.% Na2O, 3.21 wt.% K2O, 6.25 wt.% H2O, totalling 101.69 wt.%. The empirical formula, based on 24 anhydrous oxygens p.f.u., is (Na1.47K0.59)Σ;=2.06Ca4.76S6.07O24.3H2O, yielding Na2Ca5(-SO4)6.3H2O as the end-member formula. Na/K ratios are variable, with an average of ∼2.5. The crystals are elongated, with pseudohexagonal transversal cross-sections and with sphenoidal terminations that are commonly developed at one end. The crystal structure of omongwaite is similar to that of bassanite, CaSO4.0.5H2O. Published studies of the synthetic phase show that it can be described as a bassanite structure in which one out of six Ca2+ ions are replaced by Na+ and a second Na+ ion occupies a position near those sites. The crystals are parallel to the [001] axis of the gypsum crystals in which they occur as inclusions. The mineral formed by topotactic replacement during interaction of gypsum with concentrated solutions. It is preserved where the affected surface became covered by gypsum by rapid growth shortly after the formation of omongwaite. The mineral is named after the locality where it was found.
Weathering microenvironments on feldspar surfaces: implications for understanding fluid-mineral reactions in soils
Authors: Lee M. R. , Brown D. J. , Hodson M. E. , Mackenzie M. , Smith C. L. 
Published: April 2009

AbstractThe mechanisms by which coatings develop on weathered grain surfaces, and their potential impact on rates of fluid-mineral interaction, have been investigated by examining feldspars from a 1.1 ky old soil in the Glen Feshie chronosequence, Scottish highlands. Using the focused ion beam technique, electron-transparent foils for characterization by transmission electron microscopy were cut from selected parts of grain surfaces. Some parts were bare whereas others had accumulations, a few micrometres thick, of weathering products, often mixed with mineral and microbial debris. Feldspar exposed at bare grain surfaces is crystalline throughout and so there is no evidence for the presence of the amorphous ‘leached layers’ that typically form in acid-dissolution experiments and have been described from some natural weathering contexts. The weathering products comprise sub-urn thick crystallites of an Fe-K aluminosilicate, probably smectite, that have grown within an amorphous and probably organic-rich matrix. There is also evidence for crystallization of clays having been mediated by fungal hyphae. Coatings formed within Glen Feshie soils after ∼1.1 ky are insufficiently continuous or impermeable to slow rates of fluid-feldspar reactions, but provide valuable insights into the complex weathering microenvironments on debris and microbe-covered mineral surfaces.
MicroRNAs 15a and 16 regulate tumor proliferation in multiple myeloma
Authors: Roccaro Aldo M. , Sacco Antonio , Thompson Brian , Leleu Xavier , Azab Abdel Kareem , Azab Feda , Runnels Judith , Jia Xiaoying , Ngo Hai T. , Melhem Molly R. , Lin Charles P. , Ribatti Domenico , Rollins Barrett J. , Witzig Thomas E. , Anderson Kenneth C. , Ghobrial Irene M. 
Published: April 2009

Abstract
Detailed genomic studies have shown that cytogenetic abnormalities contribute to multiple myeloma (MM) pathogenesis and disease progression. Nevertheless, little is known about the characteristics of MM at the epigenetic level and specifically how microRNAs regulate MM progression in the context of the bone marrow milieu. Therefore, we performed microRNA expression profiling of bone marrow derived CD138+ MM cells versus their normal cellular counterparts and validated data by qRT-PCR. We identified a MM-specific microRNA signature characterized by down-expression of microRNA-15a/-16 and overexpression of microRNA-222/-221/-382/-181a/-181b (P < .01). We investigated the functional role of microRNA-15a and -16 and showed that they regulate proliferation and growth of MM cells in vitro and in vivo by inhibiting AKT serine/threonine-protein-kinase (AKT3), ribosomal-protein-S6, MAP-kinases, and NF-κB-activator MAP3KIP3. Moreover, miRNA-15a and -16 exerted their anti-MM activity even in the context of the bone marrow milieu in vitro and in vivo. These data indicate that microRNAs play a pivotal role in the biology of MM and represent important targets for novel therapies in MM.
Serum ferritin as risk factor for sinusoidal obstruction syndrome of the liver in patients undergoing hematopoietic stem cell transplantation
Authors: Maradei Simone Cunha , Maiolino Angelo , de Azevedo Alexandre Mello , Colares Marta , Bouzas Luis Fernando , Nucci Marcio 
Published: April 2009

Abstract
Hepatic sinusoidal obstruction syndrome (SOS) is a serious complication in hematopoietic stem cell transplant (HSCT) recipients. To determine the impact of pretransplantation hyperferritinemia on the risk of SOS after HSC transplantation, we retrospectively studied 427 HSCT recipients (179 autologous and 248 allogeneic). Serum ferritin levels were measured before transplantation. Patients with and without a diagnosis of SOS were compared regarding demographics; underlying disease; transplant characteristics; receipt of imatinib, busulfan, total body irradiation, gemtuzumab, vancomycin, acyclovir, or methotrexate; and baseline serum ferritin. Univariate and multivariate (stepwise logistic regression) analyses were performed. SOS was diagnosed in 88 patients (21%) at a median of 10 days (range, 2-29 days) after transplantation. By multivariate analysis, allogeneic HSC transplantation (odds ratio [OR] = 8.25; 95% confidence interval [95% CI], 3.31-20.57), receipt of imatinib (OR = 2.60; 95% CI, 1.16-5.84), receipt of busulfan (OR = 2.18; 95% CI, 1.25-3.80), and ferritin serum level higher than 1000 ng/dL (OR = 1.78; 95% CI, 1.02-3.08) were risk factors for SOS. A ferritin serum level higher than 1000 ng/dL in the pretransplantation period is an independent risk factor for SOS. The results suggest the need for prospective studies addressing the use of iron chelation in the pretransplantation period.