bluuebunny/crossref_metadata_2025_split huggingface dataset:
A Quality-Control and Bias-Correction Method Developed for Irregularly Spaced Time Series of Observational Pressure Data
Authors: Sperka Stefan , Steinacker Reinhold 
Published: June 2011

Abstract
This paper presents a method to detect and correct occurring biases in observational mean sea level pressure (MSLP) data, which was developed within the Mesoscale Alpine Climate Dataset [MESOCLIM; i.e., 3-hourly MSLP, potential and equivalent potential temperature Vienna Enhanced Resolution Analysis (VERA) analyses for a 3000 km × 3000 km area centered over the Alps during 1971–2005] project. There are many reasons for a change of a measurement site’s performance, for example, a change in the instrumentation, a slight modification of the site’s place or position, or a different way of data processing (pressure reduction). To get an estimate for these artificial influences in the data, deviations for each reporting station at each point of time were calculated, using a piecewise functional fitting approach that is based on a variational algorithm. In this algorithm first- and second-order spatial derivatives are minimized using the tested stations neighbor stations and furthermore their neighbors. The resulting time series of deviations for each station were then tested with a “standard normal homogeneity test” to detect changes in the mean deviation. With the knowledge of these “break points,” bias-correction estimates for each station were calculated. These correction estimates are constant between the detected break points because the method does not detect different slopes in trends. Application of these correction estimates yields in smoother fields and a more homogenous distribution of trends.
Unusual manifestation of Erdheim-Chester disease
Authors: Pan Antony , Doyle Terence , Schlup Martin , Lubcke Ralf , Schultz Michael 
Published: June 2011

Abstract

Background
Erdheim-Chester disease (ECD) is a rare multisystem non-Langerhans cell histiocytosis that is characterized histologically by xanthogranulomatous infiltrates and radiologically by symmetrical sclerosis of long bones. The xanthomatous process is characterized by prominent foamy histiocytes staining positive for CD68, occasionally for PS100 and negative for S100 and CD1a. Gastroenterological involvement is exceedingly rare.

Case Presentation
This case report describes the case of a 69-year-old man who presented otherwise well to the gastroenterology department with unspecific abdominal symptoms, nausea, vomiting and weight loss. ECD involving the gastrointestinal tract was confirmed clinically, radiologically and histologically.

Conclusion
Gastroenterological manifestation of ECD is rare but should be considered in the differential diagnosis in patients presenting with evidence of multi-organ disease and typical radiological features of Erdheim-Chester disease elsewhere.
Unsuccessful therapy with adefovir and entecavir-tenofovir in a patient with chronic hepatitis B infection with previous resistance to lamivudine: a fourteen-year evolution of hepatitis B virus mutations
Authors: Cassino Lucila , Benetti Silvina , Fay Fabian , Tanno Hugo , Quarleri Jorge 
Published: June 2011

AbstractBackgroundComplex mutants can be selected under sequential selective pressure by HBV therapy. To determine hepatitis B virus genomic evolution during antiviral therapy we characterized the HBV quasi-species in a patient who did no respond to therapy following lamivudine breakthrough for a period of 14 years.Case PresentationThe polymerase and precore/core genes were amplified and sequenced at determined intervals in a period of 14 years. HBV viral load and HBeAg/Anti-HBe serological profiles as well as amino transferase levels were also measured. A mixture of lamivudine-resistant genotype A2 HBV strains harboring the rtM204V mutation coexisted in the patient following viral breakthrough to lamivudine. The L180M+M204V dominant mutant displayed strong lamivudine-resistance. As therapy was changed to adefovir, then to entecavir, and finally to entecavir-tenofovir the viral load showed fluctuations but lamivudine-resistant strains continued to be selected, with minor contributions to the HBV quasi-species composition of additional resistance-associated mutations. At the end of the 14-year follow up period, high viral loads were predominant, with viral strains harboring the lamivudine-resistance signature rtL180M+M204V. The precore/core frame A1762T and G1764A double mutation was detected before treatment and remaining in this condition during the entire follow-up. Specific entecavir and tenofovir primary resistance-associated mutations were not detected at any time. Plasma concentrations of tenofovir indicated adequate metabolism of the drug.ConclusionsWe report the selection of HBV mutants carrying well-defined primary resistance mutations that escaped lamivudine in a fourteen-year follow-up period. With the exception of tenofovir resistance mutations, subsequent unselected primary resistance mutations were detected as minor populations into the HBV quasispecies composition during adefovir or entecavir monotherapies. Although tenofovir is considered an appropriate therapeutic alternative for the treatment of entecavir-unresponsive patients, its use was not effective in the case reported here.
Structure of catalytic domain of Matriptase in complex with Sunflower trypsin inhibitor-1
Authors: Yuan Cai , Chen Liqing , Meehan Edward J , Daly Norelle , Craik David J , Huang Mingdong , Ngo Jacky C 
Published: June 2011

AbstractBackgroundMatriptase is a type II transmembrane serine protease that is found on the surfaces of epithelial cells and certain cancer cells. Matriptase has been implicated in the degradation of certain extracellular matrix components as well as the activation of various cellular proteins and proteases, including hepatocyte growth factor and urokinase. Sunflower trypsin inhibitor-1 (SFTI-1), a cyclic peptide inhibitor originally isolated from sunflower seeds, exhibits potent inhibitory activity toward matriptase.ResultsWe have engineered and produced recombinant proteins of the matriptase protease domain, and have determined the crystal structures of the protease:SFTI-1 complex at 2.0 Å as well as the protease:benzamidine complex at 1.2 Å. These structures elaborate the structural basis of substrate selectivity of matriptase, and show that the matriptase S1 substrate specificity pocket is larger enough to allow movement of benzamidine inside the S1 pocket. Our study also reveals that SFTI-1 binds to matriptase in a way similar to its binding to trypsin despite the significantly different isoelectric points of the two proteins (5.6 vs. 8.2).ConclusionsThis work helps to define the structural basis of substrate specificity of matriptase and the interactions between the inhibitor and protease. The complex structure also provides a structural template for designing new SFTI-1 derivatives with better potency and selectivity against matriptase and other proteases.
Potential utility of natural products as regulators of breast cancer-associated aromatase promoters
Authors: Khan Shabana I , Zhao Jianping , Khan Ikhlas A , Walker Larry A , Dasmahapatra Asok K 
Published: June 2011

Abstract
Aromatase, the key enzyme in estrogen biosynthesis, converts androstenedione to estrone and testosterone to estradiol. The enzyme is expressed in various tissues such as ovary, placenta, bone, brain, skin, and adipose tissue. Aromatase enzyme is encoded by a single gene CYP 19A1 and its expression is controlled by tissue-specific promoters. Aromatase mRNA is primarily transcribed from promoter I.4 in normal breast tissue and physiological levels of aromatase are found in breast adipose stromal fibroblasts. Under the conditions of breast cancer, as a result of the activation of a distinct set of aromatase promoters (I.3, II, and I.7) aromatase expression is enhanced leading to local overproduction of estrogen that promotes breast cancer. Aromatase is considered as a potential target for endocrine treatment of breast cancer but due to nonspecific reduction of aromatase activity in other tissues, aromatase inhibitors (AIs) are associated with undesirable side effects such as bone loss, and abnormal lipid metabolism. Inhibition of aromatase expression by inactivating breast tumor-specific aromatase promoters can selectively block estrogen production at the tumor site. Although several synthetic chemical compounds and nuclear receptor ligands are known to inhibit the activity of the tumor-specific aromatase promoters, further development of more specific and efficacious drugs without adverse effects is still warranted. Plants are rich in chemopreventive agents that have a great potential to be used in chemotherapy for hormone dependent breast cancer which could serve as a source for natural AIs. In this brief review, we summarize the studies on phytochemicals such as biochanin A, genistein, quercetin, isoliquiritigenin, resveratrol, and grape seed extracts related to their effect on the activation of breast cancer-associated aromatase promoters and discuss their aromatase inhibitory potential to be used as safer chemotherapeutic agents for specific hormone-dependent breast cancer.
Chaotic incommensurate fractional order Rössler system: active control and synchronization
Authors: Razminia Abolhassan , Majd Vahid Johari , Baleanu Dumitru 
Published: June 2011

Abstract
In this article, we present an active control methodology for controlling the chaotic behavior of a fractional order version of Rössler system. The main feature of the designed controller is its simplicity for practical implementation. Although in controlling such complex system several inputs are used in general to actuate the states, in the proposed design, all states of the system are controlled via one input. Active synchronization of two chaotic fractional order Rössler systems is also investigated via a feedback linearization method. In both control and synchronization, numerical simulations show the efficiency of the proposed methods.
Apple polyphenols require T cells to ameliorate dextran sulfate sodium-induced colitis and dampen proinflammatory cytokine expression
Authors: Skyberg Jerod A , Robison Amy , Golden Sarah , Rollins MaryClare F , Callis Gayle , Huarte Eduardo , Kochetkova Irina , Jutila Mark A , Pascual David W 
Published: June 2011

ABSTRACTHuman IBD, including UC and Crohn's disease, is characterized by a chronic, relapsing, and remitting condition that exhibits various features of immunological inflammation and affects at least one/1000 people in Western countries. Polyphenol extracts from a variety of plants have been shown to have immunomodulatory and anti-inflammatory effects. In this study, treatment with APP was investigated to ameliorate chemically induced colitis. Oral but not peritoneal administration of APP during colitis induction significantly protected C57BL/6 mice against disease, as evidenced by the lack of weight loss, colonic inflammation, and shortening of the colon. APP administration dampened the mRNA expression of IL-1β, TNF-α, IL-6, IL-17, IL-22, CXCL9, CXCL10, CXCL11, and IFN-γ in the colons of mice with colitis. APP-mediated protection requires T cells, as protection was abated in Rag-1−/− or TCRα−/− mice but not in IL-10−/−, IRF-1−/−, μMT, or TCRδ−/− mice. Administration of APP during colitis to TCRα−/− mice actually enhanced proinflammatory cytokine expression, further demonstrating a requirement for TCRαβ cells in APP-mediated protection. APP treatment also inhibited CXCR3 expression by TCRαβ cells, but not B or NK cells, in the colons of mice with colitis; however, depletion of CD4+ or CD8+ T cells alone did not abolish APP-mediated protection. Collectively, these results show that oral administration of APP protects against experimental colitis and diminishes proinflammatory cytokine expression via T cells.
Plasma-accessible carbonic anhydrase at the tissue of a teleost fish may greatly enhance oxygen delivery:in vitroevidence in rainbow trout,Oncorhynchus mykiss
Authors: Rummer Jodie L. , Brauner Colin J. 
Published: June 2011

SUMMARYDuring a generalized acidosis in rainbow trout, catecholamines are released into the blood, activating red blood cell (RBC) Na+/H+ exchange (βNHE), thus protecting RBC intracellular pH (pHi) and subsequent O2 binding at the gill. Because of the presence of a Root effect (a reduction in oxygen carrying capacity of the blood with a reduction in pH), the latter could otherwise be impaired. However, plasma-accessible carbonic anhydrase (CA) at the tissues (and absence at the gills) may result in selective short-circuiting of RBC βNHE pH regulation. This would acidify the RBCs and greatly enhance O2 delivery by exploitation of the combined Bohr-Root effect, a mechanism not previously proposed. As proof-of-principle, an in vitro closed system was developed to continuously monitor extracellular pH (pHe) and O2 tension (PO2) of rainbow trout blood. In this closed system, adding CA to acidified, adrenergically stimulated RBCs short-circuited βNHE pH regulation, resulting in an increase in PO2 by &gt;30 mmHg, depending on the starting Hb-O2 saturation and degree of initial acidification. Interestingly, in the absence of adrenergic stimulation, addition of CA still elevated PO2, albeit to a lesser extent, a response that was absent during general NHE inhibition. If plasma-accessible CA-mediated short-circuiting is operational in vivo, the combined Bohr-Root effect system unique to teleost fishes could markedly enhance tissue O2 delivery far in excess of that in vertebrates possessing a Bohr effect alone and may lead to insights about the early evolution of the Root effect.
Temperature-induced maternal effects and environmental predictability
Authors: Burgess Scott C. , Marshall Dustin J. 
Published: June 2011

SUMMARYMaternal effects could influence the persistence of species under environmental change, but the adaptive significance of many empirically estimated maternal effects remains unclear. Inferences about the adaptive significance of maternal effects depend on the correlation between maternal and offspring environments, the relative importance of frequency- or density-dependent selection and whether absolute or relative fitness measures are used. Here, we combine the monitoring of the environment over time with a factorial experiment where we manipulated both the maternal and offspring environment in a marine bryozoan (Bugula neritina). We focused on temperature as our environmental variable as temperature commonly varies over short time scales in nature. We found that offspring from mothers kept in warmer water were smaller and more variable in size, but had increased dispersal potential and higher metamorphic success than offspring from mothers kept in cooler water. Our results suggest that, under frequency- or density-independent selection, mothers that experienced higher temperatures compared with lower temperatures were favoured. Under frequency- or density-dependent selection, there were indications that mothers that experienced higher temperatures would be favoured only if their offspring encountered similar (warmer) temperatures, though these results were not statistically significant. Analysis of time series data on temperature in the field shows that the maternal thermal environment is a good predictor of the temperatures offspring are likely to experience early in life. We suggest that future studies on maternal effects estimate environmental predictability and present both absolute and relative estimates of maternal fitness within each offspring environment.
Glucocorticoid and mineralocorticoid receptors regulate paracellular permeability in a primary cultured gill epithelium
Authors: Kelly Scott P. , Chasiotis Helen 
Published: June 2011

SUMMARYThe role of corticosteroid receptors (CRs) in the regulation of gill permeability was examined using a primary cultured trout gill epithelium. The epithelium expressed both glucocorticoid receptors (GR1 and GR2) and a mineralocorticoid receptor (MR), and cortisol treatment significantly increased transepithelial resistance (TER) and decreased paracellular [3H]PEG-4000 flux. Epithelial permeability was unaffected by deoxycorticosterone or aldosterone. The GR antagonist RU486 as well as MR antagonists spironolactone and RU26752 significantly reduced, but did not completely block, the effects of cortisol. The MR antagonist eplerenone was without effect. Only RU486 + spironolactone or RU486 + RU26752 treatment completely suppressed the effects of cortisol. On its own, RU486 had cortisol-like effects which could be blocked by spironolactone, suggesting that although RU486 is a GR antagonist, in this system it may also have agonistic properties that are mediated through the MR. The GR agonist dexamethasone increased TER and reduced [3H]PEG-4000 flux across cultured epithelia and was unaffected by MR antagonists. Therefore, alterations in transcript abundance of select tight junction (TJ) proteins were examined in response to cortisol, dexamethasone (a GR agonist) and RU486 (as a MR agonist). Occludin and claudin-7, -8d, -12 and -31 mRNA were significantly elevated in response to cortisol, dexamethasone or RU486 treatment. Claudin-3a mRNA was significantly elevated in response to cortisol or dexamethasone only, and claudin-28b and -30 mRNA were significantly altered following cortisol or RU486 treatment only. The data support a role for the GRs and MR in regulating gill permeability and suggest that TJ proteins are responsive to cortisol through both or individual CR types.
Building a robotic link between muscle dynamics and hydrodynamics
Authors: Richards Christopher T. 
Published: June 2011

SUMMARYThis study used a novel feedback approach to control a robotic foot using force and length signals transmitted from an isolated Xenopus laevis frog muscle. The foot's environment (inertial versus hydrodynamic), gearing (outlever/inlever) and size were changed to alter the muscle's load. Upon nerve stimulation (250 Hz, 80 ms train duration), variation in loading generated a range of muscle stress (19.8±5.3 to 66.0±22.5 kPa), work (1.89±0.67 to 6.87±2.96 J kg–1 muscle) and power (12.4±7.5 to 64.8±28.3 W kg–1 muscle; mean ± s.d., N=6 frogs). Inertial versus hydrodynamic loading dramatically shifted contractile dynamics. With the foot in water, the muscle generated ∼30% higher force, yet shortened slower, producing lower power than inertial loading. Power increased in air from 22.6±5.8 to 63.6±27.2 W kg–1 muscle in response to doubling the gear ratio, but did not increase in water. Surprisingly, altering foot size diminished muscle performance in water, causing power to drop significantly from 41.6±11.1 to 25.1±8.0 W kg–1 muscle as foot area was doubled. Thus, morphological modifications influenced muscle dynamics independently of neural control; however, changes in loading environment and gearing affected contractile output more strongly than changes in foot size. Confirming recent theory, these findings demonstrate how muscle contractile output can be modulated solely by altering the mechanical environment.
Jumping mechanisms and performance of snow fleas (Mecoptera, Boreidae)
Authors: Burrows Malcolm 
Published: June 2011

SUMMARYFlightless snow fleas (snow scorpion flies, Mecoptera, Boreidae) live as adults during northern hemisphere winters, often jumping and walking on the surface of snow. Their jumping mechanisms and performance were analysed with high speed imaging. Jumps were propelled by simultaneous movements of both the middle and hind pairs of legs, as judged by the 0.2 ms resolution afforded by image rates of 5000 frames s–1. The middle legs of males represent 140% and the hindlegs 187% of the body length (3.4 mm), and the ratio of leg lengths is 1:1.3:1.7 (front:middle:hind). In preparation for a jump the middle legs and hindlegs were rotated forwards at their coxal joints with the fused mesothorax and metathorax. The first propulsive movement of a jump was the rotation of the trochantera about the coxae, powered by large depressor muscles within the thorax. The acceleration time was 6.6 ms. The fastest jump by a male had a take-off velocity of 1 m s–1, which required 1.1 μJ of energy and a power output of 0.18 mW, and exerted a force about 16 times its body weight. Jump distances of about 100 mm were unaffected by temperature. This, and the power per mass of muscle requirement of 740 W kg–1, suggests that a catapult mechanism is used. The elastic protein resilin was revealed in four pads at the articulation of the wing hinge with the dorsal head of the pleural ridge of each middle leg and hindleg. By contrast, fleas, which use just their hindlegs for jumping, have only two pads of resilin. This, therefore, provides a functional reference point for considerations about the phylogenetic relationships between snow fleas and true fleas.
Comparison of Effects of Morning Versus Evening Administration of Ezetimibe/Simvastatin on Serum Cholesterol in Patients with Primary Hypercholesterolemia
Authors: Yoon Hyung Sik , Kim Sung Ho , Kim Jeong Kyung , Ko Sang Hun , Ko Jae Ee , Park Soo Jin , Park Moon Gi , Lee Jae Hwan , Hyon Min Soo 
Published: June 2011

Background: Ezetimibe, a first-in-its-class inhibitor of cholesterol absorption, is an effective agent for combined use with statins to achieve low-density lipoprotein cholesterol (LDL-C) goals. Ezetimibe in combination with simvastatin as a single-tablet formulation has proven to be highly effective in reducing serum LDL-C through the dual inhibition of cholesterol absorption and biosynthesis. The effect of time of administration on efficacy of this combination therapy has not been evaluated. Objective: To compare the effects of morning versus evening administration of ezetimibe/simvastatin on serum cholesterol levels of patients with primary hypercholesterolemia. Methods: In this multicenter, open-label, randomized, 2-sequence, 2-period crossover study, patients with primary hypercholesterolemia randomly received ezetimibe/simvastatin 10 mg/20 mg once daily, either in the morning (within 1 hour of breakfast) or in the evening (within 1 hour of dinner) for 6 weeks. Results: Data on 171 patients (87 in the morning administration group and 84 in the evening administration group) were analyzed. A significant reduction (p ≤ 0.001) in the total cholesterol, triglyceride, high-density lipoprotein cholesterol, LDL-C, apo-lipoprotein B, and high-sensitivity C-reactive protein (hs-CRP) from baseline was achieved after each treatment. Noninferiority of morning administration versus evening administration was shown in the percentage reduction of the LDL-C level from baseline (difference, –1.62%; 90% CI –4.94 to 1.70). No significant difference was found between groups with respect to the percentage of changes in other lipid parameters from baseline. Furthermore, there was no significant difference in the percentage of change in hs-CRP as an antiinflammatory marker between the morning and evening administration groups. The frequency of adverse events was similar between groups. Conclusions: Morning administration of ezetimibe/simvastatin 10 mg/20 mg is noninferior to evening administration with respect to LDL-C–lowering ability.