bluuebunny/crossref_metadata_2025_split huggingface dataset:
Air–liquid biofilm formation is dependent on ammonium depletion in a Saccharomyces cerevisiae flor strain
Authors: Zara Giacomo , Budroni Marilena , Mannazzu Ilaria , Zara Severino 
Published: September 2011

AbstractAir–liquid biofilm formation appears to be an adaptive mechanism that promotes foraging of Saccharomyces cerevisiae flor strains in response to nutrient starvation. The FLO11 gene plays a central role in this phenotype as its expression allows yeast cells to rise to the liquid surface. Here, we investigated the role of ammonium depletion in air–liquid biofilm formation and FLO11 expression in a S. cerevisiae flor strain. The data obtained show that increasing ammonium concentrations from 0 to 450 m m reduce air–liquid biofilm in terms of biomass and velum formation and correlate with a reduction of FLO11 expression. Rapamycin inhibition of the TOR pathway and deletion of RAS2 gene significantly reduced biofilm formation and FLO11 expression. Taken together, these data suggest that ammonium depletion is a key factor in the induction of air–liquid biofilm formation and FLO11 expression in S. cerevisiae flor strains. Copyright © 2011 John Wiley & Sons, Ltd.
Stability and energy budget of pressure-driven collapsible channel flows
Authors: Liu H. F. , Luo X. Y. , Cai Z. X. 
Published: September 2011

AbstractAlthough self-excited oscillations in collapsible channel flows have been extensively studied, our understanding of their origins and mechanisms is still far from complete. In the present paper, we focus on the stability and energy budget of collapsible channel flows using a fluid–beam model with the pressure-driven (inlet pressure specified) condition, and highlight its differences to the flow-driven (i.e. inlet flow specified) system. The numerical finite element scheme used is a spine-based arbitrary Lagrangian–Eulerian method, which is shown to satisfy the geometric conservation law exactly. We find that the stability structure for the pressure-driven system is not a cascade as in the flow-driven case, and the mode-2 instability is no longer the primary onset of the self-excited oscillations. Instead, mode-1 instability becomes the dominating unstable mode. The mode-2 neutral curve is found to be completely enclosed by the mode-1 neutral curve in the pressure drop and wall stiffness space; hence no purely mode-2 unstable solutions exist in the parameter space investigated. By analysing the energy budgets at the neutrally stable points, we can confirm that in the high-wall-tension region (on the upper branch of the mode-1 neutral curve), the stability mechanism is the same as proposed by Jensen & Heil. Namely, self-excited oscillations can grow by extracting kinetic energy from the mean flow, with exactly two-thirds of the net kinetic energy flux dissipated by the oscillations and the remainder balanced by increased dissipation in the mean flow. However, this mechanism cannot explain the energy budget for solutions along the lower branch of the mode-1 neutral curve where greater wall deformation occurs. Nor can it explain the energy budget for the mode-2 neutral oscillations, where the unsteady pressure drop is strongly influenced by the severely collapsed wall, with stronger Bernoulli effects and flow separations. It is clear that more work is required to understand the physical mechanisms operating in different regions of the parameter space, and for different boundary conditions.
A falling film down a slippery inclined plane
Authors: Samanta A. , Ruyer-Quil C. , Goyeau B. 
Published: September 2011

AbstractA gravity-driven film flow on a slippery inclined plane is considered within the framework of long-wave and boundary layer approximations. Two coupled depth-averaged equations are derived in terms of the local flow rate$q(x, t)$and the film thickness$h(x, t)$. Linear stability analysis of the averaged equations shows good agreement with the Orr–Sommerfeld analysis. The effect of a slip at the wall on the primary instability has been found to be non-trivial. Close to the instability onset, the effect is destabilising whereas it becomes stabilising at larger values of the Reynolds number. Nonlinear travelling waves are amplified by the presence of the slip. Comparisons to direct numerical simulations show a remarkable agreement for all tested values of parameters. The averaged equations capture satisfactorily the speed, shape and velocity distribution in the waves. The Navier slip condition is observed to significantly enhance the backflow phenomenon in the capillary region of the solitary waves with a possible effect on heat and mass transfer.
Non-parametric parametricity
Authors: NEIS GEORG , DREYER DEREK , ROSSBERG ANDREAS 
Published: September 2011

AbstractType abstraction and intensional type analysis are features seemingly at odds—type abstraction is intended to guarantee parametricity and representation independence, while type analysis is inherently non-parametric. Recently, however, several researchers have proposed and implemented “dynamic type generation” as a way to reconcile these features. The idea is that, when one defines an abstract type, one should also be able to generate at runtime a fresh type name, which may be used as a dynamic representative of the abstract type for purposes of type analysis. The question remains: in a language with non-parametric polymorphism, does dynamic type generation provide us with the same kinds of abstraction guarantees that we get from parametric polymorphism?Our goal is to provide a rigorous answer to this question. We define a step-indexed Kripke logical relation for a language with both non-parametric polymorphism (in the form of type-safe cast) and dynamic type generation. Our logical relation enables us to establish parametricity and representation independence results, even in a non-parametric setting, by attaching arbitrary relational interpretations to dynamically generated type names. In addition, we explore how programs that are provably equivalent in a more traditional parametric logical relation may be “wrapped” systematically to produce terms that are related by our non-parametric relation, and vice versa. This leads us to develop a “polarized” variant of our logical relation, which enables us to distinguish formally between positive and negative notions of parametricity.
Occurrence of CorncrakesCrex crexin mosaic farmland landscapes in south-central Sweden – effects of habitat and landscape structure
Authors: BERG ÅKE , HIRON MATTHEW 
Published: September 2011

SummaryMost studies of Corncrakes have been conducted in grasslands used for hay-cutting, and earlier hay-cutting has been suggested as the main cause of population decline in this species. Less is known about habitat preferences in relation to other land-uses and landscape structure. This paper investigated habitat composition and landscape structure in territories and at random sites in arable fields and meadows in south-central Sweden. Calling Corncrakes preferred sites with tall vegetation, moist ground, and locations close to ditches (55% of territories). Suitable conditions occurred on abandoned unmanaged wet meadows (31% of territories), mown wet meadows (14%), leys (30%) and non-rotational set-asides (15% of territories). Corncrakes avoided annual crops and other crops with short vegetation in the spring. Cutting of vegetation before mid-July was recorded in 21% of the territories and resulted in 100% abandonment of these sites. In contrast to many other ground nesting farmland birds, Corncrakes did not avoid forest edges (42% of territories within 100 m of edges). A strategy to conserve Corncrake populations should focus on maintenance of moist natural and sown grasslands (unmanaged or mown late) with tall vegetation and prevention of succession to woodland. Target areas should be in forested landscapes, because many other meadow birds that are more dependent on management (e.g. yearly mowing or grazing) prefer open landscapes.
Food insecurity among adults residing in disadvantaged urban areas: potential health and dietary consequences
Authors: Ramsey Rebecca , Giskes Katrina , Turrell Gavin , Gallegos Danielle 
Published: September 2011

AbstractObjectiveFood insecurity is the limited or uncertain availability or access to nutritionally adequate, culturally appropriate and safe foods. Food insecurity may result in inadequate dietary intakes, overweight or obesity and the development of chronic disease. Internationally, few studies have focused on the range of potential health outcomes related to food insecurity among adults residing in disadvantaged locations and no such Australian studies exist. The objective of the present study was to investigate associations between food insecurity, sociodemographic and health factors and dietary intakes among adults residing in disadvantaged urban areas.DesignData were collected by mail survey (n505, 53 % response rate), which ascertained information about food security status, demographic characteristics (such as age, gender, household income, education) fruit and vegetable intakes, takeaway and meat consumption, general health, depression and chronic disease.SettingDisadvantaged suburbs of Brisbane city, Australia, 2009.SubjectsIndividuals aged ≥ 20 years.ResultsApproximately one in four households (25 %) was food insecure. Food insecurity was associated with lower household income, poorer general health, increased health-care utilisation and depression. These associations remained after adjustment for age, gender and household income.ConclusionsFood insecurity is prevalent in urbanised disadvantaged areas in developed countries such as Australia. Low-income households are at high risk of experiencing food insecurity. Food insecurity may result in significant health burdens among the population, and this may be concentrated in socio-economically disadvantaged suburbs.
Measures of the home environment related to childhood obesity: a systematic review
Authors: Pinard Courtney A , Yaroch Amy L , Hart Michael H , Serrano Elena L , McFerren Mary M , Estabrooks Paul A 
Published: September 2011

AbstractObjectiveDue to a proliferation of measures for different components of the home environment related to childhood obesity, the purpose of the present systematic review was to examine these tools and the degree to which they can validly and reliably assess the home environment.DesignRelevant manuscripts published between 1998 and 2010 were obtained through electronic database searches and manual searches of reference lists. Manuscripts were included if the researchers reported on a measure of the home environment related to child eating and physical activity (PA) and childhood obesity and reported on at least one psychometric property.ResultsOf the forty papers reviewed, 48 % discussed some aspect of parenting specific to food. Fifty-per cent of the manuscripts measured food availability/accessibility, 18 % measured PA availability/accessibility, 20 % measured media availability/accessibility, 30 % focused on feeding style, 23 % focused on parenting related to PA and 20 % focused on parenting related to screen time.ConclusionsMany researchers chose to design new measures for their studies but often the items employed were brief and there was a lack of transparency in the psychometric properties. Many of the current measures of the home food and PA environment focus on one or two constructs; more comprehensive measures as well as short screeners guided by theoretical models are necessary to capture influences in the home on food and PA behaviours of children. Finally, the current measures of the home environment do not necessarily translate to specific sub-populations. Recommendations were made for future validation of measures in terms of appropriate psychometric testing.
A bean-free diet increases the risk of all-cause mortality among Taiwanese women: the role of the metabolic syndrome
Authors: Chang Wan-Chi , Wahlqvist Mark L , Chang Hsing-Yi , Hsu Chih-Cheng , Lee Meei-Shyuan , Wang Wuan-Szu , Hsiung Chao A 
Published: September 2011

AbstractObjectiveTo evaluate the associations with chronic disease risk and mortality of the consequences of bean-free diets in Taiwanese adults with regard to gender.DesignA sub-sample of the National Health Interview Survey (NHIS) in 2001 agreed to physical examination in the subsequent year. This group then took part in the Taiwanese Survey of Hyperglycaemia, Hyperlipidaemia and Hypertension (TwSHHH) in 2002.SettingIndividual records were linked to the eventual death files from 2002 to 2008.SubjectsUp to the end of 2008, a total of 2820 men and 2950 women were tracked by death registry over the 6·8 years of follow-up.ResultsAmong 38 077 person-years, an average follow-up 6·5 years, 225 all-cause deaths were identified. Generalized linear models showed beans to be favourable for metabolic syndrome (other than for fasting glucose) in men; in women, beans were favourable for waist circumference and HbA1c. Cumulative logistic regression models for the effect of a bean-free diet on metabolic syndrome scores according to the Taiwanese-modified National Cholesterol Education Program–Adult Treatment Panel III (NCEP-tw) gave adjusted odds ratios of 1·83 in men and 1·45 in women. Cox regression models for the bean-free diet showed an increased hazard ratio for all-cause mortality among women (1·98, 95 % CI 1·03, 3·81) but not men (1·28, 95 % CI 0·76, 2·16).ConclusionsA bean-free diet may play a role in developing the metabolic syndrome in both genders, and is a significant predictor of all-cause mortality in Taiwanese women but not men.
Breakfast consumption and daily physical activity in 9–10-year-old British children
Authors: Vissers Pauline AJ , Jones Andy P , Corder Kirsten , Jennings Amy , van Sluijs Esther MF , Welch Ailsa , Cassidy Aedin , Griffin Simon 
Published: September 2011

AbstractObjectiveTo examine the association between breakfast consumption and physical activity in a well-characterised sample of English children.DesignCross-sectional study using food diaries to record breakfast consumption and accelerometry to assess physical activity.SettingNorfolk county, England.SubjectsChildren (n 1697) aged 9–10 years from the SPEEDY (Sport, Physical Activity and Eating behaviour: Environmental Determinants in Young people) study.ResultsBoys who consumed a poor-quality breakfast based on dairy product, cereal and fruit intakes spent approximately 7 min more time in moderate-to-vigorous physical activity (MVPA) during weekday afternoons and evenings compared with those who did not consume breakfast (P < 0·05). On weekend days, boys who consumed a poor- or good-quality breakfast spent approximately 6 and 5 min less time respectively being sedentary during the mornings compared with breakfast non-consumers (P < 0·05). Boys who consumed a good-quality breakfast spent almost 3 min more in MVPA during the morning on weekend days compared with non-consumers, and boys who consumed a poor- or good-quality breakfast were 22 % and 16 % more active overall respectively than breakfast non-consumers (P < 0·05). During the rest of the day, boys who consumed a good-quality breakfast spent about 11 min less time being sedentary (P < 0·05) and 7 min more time in MVPA (P < 0·01).ConclusionsAlthough some associations between breakfast consumption and physical activity were detected for boys, the present study does not provide strong evidence that failing to consume breakfast, or having a low energy intake at breakfast time, is detrimental to children's physical activity levels.
Reference curves for BMI, waist circumference and waist-to-height ratio for Azorean adolescents (Portugal)
Authors: Santos Rute , Moreira Carla , Ruiz Jonatan R , Vale Susana , Soares-Miranda Luisa , Moreira Pedro , Lopes Luis , Marques Ana I , Oliveira-Tavares Antonio , Santos Paula C , Abreu Sandra , Coelho-Silva Manuel J , Mota Jorge 
Published: September 2011

AbstractObjectiveThere are no percentile curves for BMI, waist circumference (WC) or waist-to-height ratio (WHtR) available for Portuguese children and adolescents. The purpose of the present study was to develop age- and sex-specific BMI, WC and WHtR percentile curves for a representative sample of adolescents living in the Portuguese islands of Azores, one of the poorest regions of Europe, and to compare them with those from other countries.DesignCross-sectional school-based study. Weight, height and WC were objectively measured according to standard procedures. Smoothed percentile curves were estimated using Cole's LMS method.SettingAzores, Portugal.SubjectsProportionate stratified random sample of 1500 adolescents, aged 15–18 years.ResultsResults showed some sex differences in the shape of the BMI curves: in girls, the upper percentile values tend to decrease by the age of 16 and 17 years; whereas in boys, the upper percentiles tend to be flat between 15 and 16 years and then increase until the age of 18 years. In both sexes, the upper percentile values of both WC and WHtR decreased slightly by the age of 16 years and then increased steeply. In both sexes, the Azorean values for the 50th and 90th WC percentiles were higher than those reported for adolescents from the majority of other countries.ConclusionsThe reference curves presented herein provide baseline data for the long-term surveillance of Azorean adolescents, as well as for national and international comparisons.
Who is missing the message? Targeting strategies to increase food label use among US adults
Authors: Chen Xiaoli , Jahns Lisa , Gittelsohn Joel , Wang Youfa 
Published: September 2011

AbstractObjectiveTo evaluate the associations between sociodemographic and psychosocial characteristics and food label (FL) use in US adults.DesignData from the 1994–1996 Continuing Survey of Food Intakes by Individuals and the Diet and Health Knowledge Survey were used. High socio-economic status (SES) was defined as >high school education and poverty–income ratio (PIR) >350 %, low SES as <high school level or PIR <130 %. Dietary intakes were assessed using 24 h recalls.SettingMetropolitan statistical area-central city, -suburban, and rural areas in the USA.SubjectsUS adults (n2797; 1460 men, 1337 women) aged 20–64 years.ResultsApproximately 80 % of Americans reported using FL, including checking the nutrition panel, list of ingredients, short phrases, serving size, or health benefits. Only 26 % used all FL information. Compared with white women of higher SES, white men, black men and women with lower SES were 77–90 % less likely to use FL. Rural residents were 40 % less likely (OR = 0·60; 95 % CI 0·42, 0·86). Participants with good nutrition knowledge, perceptions and beliefs were twice as likely to check FL for nutrient content of foods (OR = 2·28; 95 % CI 1·53–3·40). Those who were unaware of diet–disease relationships were less likely to use FL (OR = 0·53; 95 % CI 0·32–0·85). Among overweight/obese Americans (BMI ≥ 25 kg/m2), those who perceived their weight ‘about right’ were 51 % less likely to use FL than those perceiving themselves as overweight.ConclusionsMen, especially black men, women of low SES, rural residents and overweight Americans with inaccurate self-perception of body weight are less likely to use FL and should be targeted for increased intervention.
Distribution of ABO blood groups and Rh(D) factor among the Brahmin and Kushwaha populations of Jhansi District(U.P)
Authors: Dar Nawab John , Srivastava Ankit , Dar Farooq 
Published: September 2011

AbstractThe distribution of ABO blood groups and Rh(D) factor has been studied among the Brahmin and Kushwaha populations of Jhansi Uttar Pradesh. The A,B,O and AB blood group percentage in Brahmins was recorded as 20.88%, 36.64%, 37.02% and 10.44% .The Rh(D) positive percentage was 96.20% and Rh(d) negative 3.79%. In Kushwaha population the percentage of A,B,O and AB was recorded as 25.65%, 30.26%, 31.25% and 12.82% respectively. The Rh (D) positive was recorded as 97.36% and Rh(d) negative as 2.63%. The allele frequency of ABO among Brahmins was 0.198, 0.266, 0.536 and in Kushwaha the allele frequency of ABO was recorded as 0.251, 0.278, and 0.471 respectively. So the prevalence of the ABO from the area under study can be shown with a general formula as O>B>A>AB.
The System Biology Format Converter
Authors: Jalowicki Gaël , Rodriguez Nicolas , Kutmon Martina , Pettit Jean-Baptiste , Li Lu , Henry Arnaud , Nath Natarajan Kedar , Laibe Camille , Evelo Chris T. , Le Novère Nicolas 
Published: September 2011

AbstractThe System Biology Format Converter (SBFC) aims is to provide a generic framework that potentially allows any conversion between two formats. Interoperability between formats is a recurring issue in Systems Biology. Although there are various tools available to convert models from one format to another, most of them have been independently developed and cannot easily be combined, specially to provide support for more formats. The framework is written in Java and can be used as a standalone executable. This is a collaborative project and we hope that developers will provide support for more formats by creating new modules.SBFC allows anyone to easily add new converters and to integrate existing converters with a minimum of changes. We will also allow to combine several existing converters.
Electronic Nose Technology to Measure Soil Microbial Activity and Classify Soil Metabolic Status
Authors: De Cesare Fabrizio , Di Mattia Elena , Pantalei Simone , Zampetti Emiliano , Vinciguerra Vittorio , Macagnano Antonella 
Published: September 2011

AbstractThe electronic nose (E-nose) is a sensing technology that has been widely used to monitor environments in the last decade. In the present study, the capability of an E-nose, in combination with biochemical and microbiological techniques, of both detecting the microbial activity and estimating the metabolic status of soil ecosystems, was tested by measuring on one side respiration, enzyme activities and growth of bacteria in natural but simplified soil ecosystems over 23 days of incubation through traditional methodologies, and on the other side VOCs and/or gases evolution in their headspace during the same period through the E-nose. Both kinds of measurements, i.e. biochemical-microbiological and sensorial, succeeded in discriminating between inoculated and non-inoculated microcosms and in distinguishing different phases of bacterial growth and activity during the incubation. E-nose responses were highly and significantly correlated with all catalytic activities, respiration and different phases of bacterial growth. Hence, the E-nose was proved able to detect microbial activity in natural soil ecosystems. The metabolic status of these soil ecosystems was calculated on the base of some of the parameters previously tested in order to obtain a metabolic index (MI), ranging between 0 and 1. These MIs were then grouped into 3 classes, corresponding to a low, medium and high metabolic status. All the other measures were used as a multi-type data set in a partial least square discriminant analysis to generate a model capable of classifying the soil microcosms at different sampling dates according to the 3 classes of MIs. The resulting outcomes confirmed that the E-nose technology combined with both metabolic and biomass parameters can altogether represent reliable indicators of the metabolic status of soil ecosystems.