bluuebunny/crossref_metadata_2025_split huggingface dataset:
In situ brain tumor detection using a Raman spectroscopy system—results of a multicenter study
Authors: Ember Katherine , Dallaire Frédérick , Plante Arthur , Sheehy Guillaume , Guiot Marie-Christine , Agarwal Rajeev , Yadav Rajeev , Douet Alice , Selb Juliette , Tremblay Jean Philippe , Dupuis Alex , Marple Eric , Urmey Kirk , Rizea Caroline , Harb Armand , McCarthy Lily , Schupper Alexander , Umphlett Melissa , Tsankova Nadejda , Leblond Frédéric , Hadjipanayis Constantinos , Petrecca Kevin 
Published: June 2024

AbstractSafe and effective brain tumor surgery aims to remove tumor tissue, not non-tumoral brain. This is a challenge since tumor cells are often not visually distinguishable from peritumoral brain during surgery. To address this, we conducted a multicenter study testing whether the Sentry System could distinguish the three most common types of brain tumors from brain tissue in a label-free manner. The Sentry System is a new real time, in situ brain tumor detection device that merges Raman spectroscopy with machine learning tissue classifiers. Nine hundred and seventy-six in situ spectroscopy measurements and colocalized tissue specimens were acquired from 67 patients undergoing surgery for glioblastoma, brain metastases, or meningioma to assess tumor classification. The device achieved diagnostic accuracies of 91% for glioblastoma, 97% for brain metastases, and 96% for meningiomas. These data show that the Sentry System discriminated tumor containing tissue from non-tumoral brain in real time and prior to resection.
Tomato yield, and water use efficiency as affected by nitrogen rate and irrigation regime in the central low lands of Ethiopia
Authors: Shewangizaw Beza , Kassie Kenzemed , Assefa Shawl , Lemma Getachew , Gete Yalemegena , Getu Demisew , Getanh Lisanu , Shegaw Getanh , Manaze Gebrehana 
Published: June 2024

AbstractTomato yield can be increased by the application of optimum water and fertilizer. A field experiment was conducted in Efratana Gidim district, North Shewa, Amhara, Ethiopia, during 2019 and 2020. The objective was to determine the nitrogen (N) rate and irrigation regime for optimum tomato yield and water use efficiency (WUE). The experiment consisted of three-irrigation regimes (75% ETc (Evapotranspiration from the crop), 100% ETc, and 125% ETc) and four nitrogen (N) rates (control; i.e. without N application1, 46 kg N ha−1, 92 kg N ha−1, and 138 kg N ha−1). The treatments were laid out in a split-plot design with four replications. The Irrigation regime were assigned to the main plot, while the N rate were assigned to the subplot. Data on growth, yield, and yield-related traits of tomatoes, include; plant height, number of fruit clusters per plant, fruit length, fruit diameter, number of marketable fruits, number of un-marketable fruits, the total number of fruits, marketable fruit yield, un-marketable fruit yield, total yield were collected. The data were subjected to analysis of variance using R studio. The results indicated that the experimental site had low total N content, and the application of N fertilizer significantly improved tomato yield. Increasing irrigation depth also significantly increased tomato yield. The result indicated that the highest mean marketable fruit yield (35,903 kg ha−1) was obtained from the combined application of 125% ETc with 92 kg N ha−1, while the lowest (13,655 kg ha−1) marketable fruit yield was obtained from 75% ETc with 92 kg N ha−1. The analysis of variance showed that the highest (5.4 kg m−3) WUE recorded from 75% ETc with 46 kg N ha−1 increased WUE by 77% (2.4 kg m−3) compared with the lowest (2.3 kg m−3) WUE recorded from 125% ETc with 0 kg N ha−1. The partial budget analysis also indicated that the highest net benefit (266,272 ETB (Ethiopian Birr) ha−1) and an acceptable marginal rate of return (1240%) for the invested capital was recorded from the combined application of 125% ETc with 92 kg N ha−1. Therefore, the application of 125% ETc with 92 kg N ha−1 resulted in the highest net benefit.
Despite plasticity, heatwaves are costly for a coral reef fish
Authors: Van Wert Jacey C. , Birnie-Gauvin Kim , Gallagher Jordan , Hardison Emily A. , Landfield Kaitlyn , Burkepile Deron E. , Eliason Erika J. 
Published: June 2024

AbstractClimate change is intensifying extreme weather events, including marine heatwaves, which are prolonged periods of anomalously high sea surface temperature that pose a novel threat to aquatic animals. Tropical animals may be especially vulnerable to marine heatwaves because they are adapted to a narrow temperature range. If these animals cannot acclimate to marine heatwaves, the extreme heat could impair their behavior and fitness. Here, we investigated how marine heatwave conditions affected the performance and thermal tolerance of a tropical predatory fish, arceye hawkfish (Paracirrhites arcatus), across two seasons in Moorea, French Polynesia. We found that the fish’s daily activities, including recovery from burst swimming and digestion, were more energetically costly in fish exposed to marine heatwave conditions across both seasons, while their aerobic capacity remained the same. Given their constrained energy budget, these rising costs associated with warming may impact how hawkfish prioritize activities. Additionally, hawkfish that were exposed to hotter temperatures exhibited cardiac plasticity by increasing their maximum heart rate but were still operating within a few degrees of their thermal limits. With more frequent and intense heatwaves, hawkfish, and other tropical fishes must rapidly acclimate, or they may suffer physiological consequences that alter their role in the ecosystem.
Systematic selection of suitable reference genes for quantitative real-time PCR normalization studies of gene expression in Lutjanus erythropterus
Authors: Chen Lujun , Liang Qiulu , Lai Zhuoxin , Cui Haitao , Xu Zhenmin , Chen Zizhao , Dong Zhongdian , Wang Zhongduo , Guo Yusong 
Published: June 2024

AbstractQuantitative real-time PCR (qRT-PCR) has been widely employed for the study of gene expression in fish, and accurate normalization is crucial. In this study, we aimed to identify the most stably expressed genes in various tissues, different developmental stages, and within astaxanthin treatment groups in Lutjanuserythropterus. Twelve candidate genes (EEF1A, CYB5R3, DLD, IDH3A, MRPL17, MRPL43, NDUFS7, PABPC1, PAGR1, PFDN2, PSMC3, and RAB10) were examined via qRT-PCR. We employed geNorm and NormFinder to assess their stability. The results revealed that RAB10 and PFDN2 exhibited relatively stable expression patterns across different tissue and astaxanthin treatment groups, while NDUFS7 and MRPL17 proved to be the most reliable reference gene combinations across various developmental stages. The stability of these selected genes was further validated by assessing the expression of two target genes, CRADD and CAPNS1, across developmental stages, reinforcing the reliability of NDUFS7 as it closely aligned with transcriptome-wide expression patterns at these stages. The present results will help researchers to obtain more accurate results in future qRT-PCR analysis in L.erythropterus.
Fluorescence lifetime imaging with distance and ranging using a miniaturised SPAD system
Authors: Matheson Andrew B. , Hopkinson Charlotte , Tanner Michael G. , Henderson Robert K. 
Published: June 2024

AbstractIn this work we demonstrate a miniaturised imaging system based around a time-gated SPAD array operating in a “chip-on-tip” manner. Two versions of the system are demonstrated, each measuring 23 mm × 23 mm × 28 mm with differing fields of view and working distances. Initial tests demonstrate contrast between materials in widefield fluorescence imaging (WFLIm) mode, with frame rates of > 2 Hz achievable. Following this, WFLIm images of autofluorescence in ovine lung tissue are obtained at frame rates of ~ 1 Hz. Finally, the ability of the second system to perform simultaneous WFLIm and time of flight (aka Flourescence Lifetime Imaging Distance and Ranging, FLImDAR) is also tested. This shows that the system is capable of 4 mm resolution of object separation when tested on 3D printed samples. It is further demonstrated as being able to perform scene reconstruction on autofluorescent lung tissue. This system is, to date, the smallest chip on tip WFLIm system published, and is the first demonstration of the FLImDAR technique in a compact, portable system.
Secure hardware IP of GLRT cascade using color interval graph based embedded fingerprint for ECG detector
Authors: Sengupta Anirban , Anshul Aditya 
Published: June 2024

AbstractThis paper presents a security aware design methodology to design secure generalized likelihood ratio test (GLRT) hardware intellectual property (IP) core for electrocardiogram (ECG) detector against IP piracy and fraudulent claim of IP ownership threats. Integrating authentic (secure version) GLRT hardware IP core in the system-on-chip (SoC) of ECG detectors is paramount for reliable operation and estimation of ECG parametric data, such as Q wave, R wave and S wave (QRS) complex detection. A pirated GLRT hardware IP integrated into an ECG detector may result in an unreliable/erratic estimation of ECG parametric data that can be hazardous and fatal for the end patient. The proposed methodology presents an integrated design flow to secure micro GLRT and GLRT cascade hardware IP cores for the ECG detector, using the colored interval graph (CIG) framework based fingerprint biometric, during high level synthesis (HLS). The proposed approach integrates a fingerprint biometric based security constraint generation process for securing the GLRT hardware IP core. This paper also presents a secure register transfer level (RTL) datapath design corresponding to micro GLRT and GLRT cascade hardware IP cores with embedded IP vendor's fingerprint. The proposed secure GLRT hardware IP core embedded with fingerprint biometric achieves superior results in terms of probability of coincidence and tamper tolerance than other security approaches. More explicitly, the proposed approach reports a significantly lower value of probability of coincidence and stronger value for tamper tolerance. Further, the proposed approach incurs zero design cost overhead.
Endorsement of metaphysical idealism mediates a link between past use of psychedelics and wellbeing
Authors: Jylkkä Jussi , Krabbe Andreas , Jern Patrick 
Published: June 2024

AbstractIt has been proposed that psychedelics promote wellbeing through spiritual-type transformations, involving changes in metaphysical beliefs. Past empirical research shows a link between the use of psychedelics and the endorsement of non-physicalist metaphysical beliefs. However, non-physicalist beliefs encompass a wide range of metaphysical ideas, and their links to wellbeing and psychedelics use remain unclear. We utilized a cross-sectional Internet survey to probe the metaphysical beliefs of participants (N = 701) with past experience of classical psychedelics, using a novel 42-item questionnaire (Core Metaphysical Beliefs, CMB), encompassing a wide range of metaphysical beliefs. Factor analysis of CMB revealed two factors, Idealism and Materialism. In network analyses, Idealism was linked to psychological insight in a past psychedelic experience (E = 0.24) and average use of psychedelics (E = 0.16), and predicted wellbeing (Es = 0.13 and 0.22). Mediation analyses showed an indirect link from past psychedelics use through Idealism to wellbeing (ps ≤ .005). Non-Physicalist Beliefs or Materialism were not significant mediators. The results indicate that Idealism specifically, not non-physicalist beliefs generally, mediate a link between the use of psychedelics and wellbeing. Future research is required to establish whether the link is causal, and to understand what the Idealism factor means.
Evaluating the antibody response elicited by diverse HIV envelope immunogens in the African green monkey (Vervet) model
Authors: Moyo-Gwete Thandeka , Ayres Frances , Mzindle Nonkululeko B. , Makhado Zanele , Manamela Nelia P. , Richardson Simone I. , Kitchin Dale , van Graan Strauss , van Heerden Joritha , Parbhoo Nishal , Chege Gerald K. , Moore Penny L. 
Published: June 2024

AbstractAfrican Green (Vervet) monkeys have been extensively studied to understand the pathogenesis of infectious diseases. Using vervet monkeys as pre-clinical models may be an attractive option for low-resourced areas as they are found abundantly and their maintenance is more cost-effective than bigger primates such as rhesus macaques. We assessed the feasibility of using vervet monkeys as animal models to examine the immunogenicity of HIV envelope trimer immunogens in pre-clinical testing. Three groups of vervet monkeys were subcutaneously immunized with either the BG505 SOSIP.664 trimer, a novel subtype C SOSIP.664 trimer, CAP255, or a combination of BG505, CAP255 and CAP256.SU SOSIP.664 trimers. All groups of vervet monkeys developed robust binding antibodies by the second immunization with the peak antibody response occurring after the third immunization. Similar to binding, antibody dependent cellular phagocytosis was also observed in all the monkeys. While all animals developed potent, heterologous Tier 1 neutralizing antibody responses, autologous neutralization was limited with only half of the animals in each group developing responses to their vaccine-matched pseudovirus. These data suggest that the vervet monkey model may yield distinct antibody responses compared to other models. Further study is required to further determine the utility of this model in HIV immunization studies.
Short-term outcome of intracorporeal ileocolonic anastomosis in patients with visceral obesity
Authors: Guo Fangliang , Xia Cong , Wang Zongheng , Wang Ruiqi , Meng Yue , Zhang Qianshi , Ren Shuangyi 
Published: June 2024

AbstractThe primary objective of this study was to compare short-term outcomes between Intracorporeal ileocolic anastomosis (IIA) and extracorporeal ileocolic anastomosis (EIA) after laparoscopic right hemicolectomy in patients with visceral obesity. The secondary objective was to identify risk factors associated with prolonged postoperative ileus (PPOI) after laparoscopic right hemicolectomy. This single-center retrospective study analyzed visceral obesity patients who underwent laparoscopic right hemicolectomy for primary bowel cancer between January 2020 and June 2023. Patients were categorized into IIA and EIA groups based on the type of anastomosis, and a 1:1 propensity score-matched analysis was performed. A total of 129 patients were initially included in this study, with 45 patients in each group following propensity score matching. The IIA group had significantly longer anastomosis times (p < 0.001), shorter incision length (p < 0.001), and shorter length of stay (p = 0.003) than the EIA group. Meanwhile, the IIA group showed a shorter time to first flatus (p = 0.044) and quicker tolerance of a solid diet (p = 0.030). On multivariate analysis, postoperative use of opioid analgesics is an independent risk factor for PPOI (OR: 3.590 95% CI 1.033–12.477, p = 0.044), while IIA is an independent protective factor (OR: 0.195 95% CI 0.045–0.843, p = 0.029). IIA remains a safe and feasible option for visceral obesity patients. It is also associated with a quicker recovery of bowel function and shorter length of stay when compared to EIA. Additionally, IIA is an independent protective factor for PPOI.
Lightweight strip steel defect detection algorithm based on improved YOLOv7
Authors: Lu Jianbo , Yu MiaoMiao , Liu Junyu 
Published: June 2024

AbstractThe precise identification of surface imperfections in steel strips is crucial for ensuring steel product quality. To address the challenges posed by the substantial model size and computational complexity in current algorithms for detecting surface defects in steel strips, this paper introduces SS-YOLO (YOLOv7 for Steel Strip), an enhanced lightweight YOLOv7 model. This method replaces the CBS module in the backbone network with a lightweight MobileNetv3 network, reducing the model size and accelerating the inference time. The D-SimSPPF module, which integrates depth separable convolution and a parameter-free attention mechanism, was specifically designed to replace the original SPPCSPC module within the YOLOv7 network, expanding the receptive field and reducing the number of network parameters. The parameter-free attention mechanism SimAM is incorporated into both the neck network and the prediction output section, enhancing the ability of the model to extract essential features of strip surface defects and improving detection accuracy. The experimental results on the NEU-DET dataset show that SS-YOLO achieves a 97% mAP50 accuracy, which is a 4.5% improvement over that of YOLOv7. Additionally, there was a 79.3% reduction in FLOPs(G) and a 20.7% decrease in params. Thus, SS-YOLO demonstrates an effective balance between detection accuracy and speed while maintaining a lightweight profile.
Pathology of acute sub-lethal or near-lethal irradiation of nonhuman primates prophylaxed with the nutraceutical, gamma tocotrienol
Authors: Singh Vijay K. , Wise Stephen Y. , Fatanmi Oluseyi O. , Petrus Sarah A. , Carpenter Alana D. , Lugo-Roman Luis A. , Lee Sang-Ho , Hauer-Jensen Martin , Seed Thomas M. 
Published: June 2024

AbstractExposure to high, marginally lethal doses or higher of ionizing radiation, either intentional or accidental, results in injury to various organs. Currently, there is only a limited number of safe and effective radiation countermeasures approved by US Food and Drug Administration for such injuries. These approved agents are effective for only the hematopoietic component of the acute radiation syndrome and must be administered only after the exposure event: currently, there is no FDA-approved agent that can be used prophylactically. The nutraceutical, gamma-tocotrienol (GT3) has been found to be a promising radioprotector of such exposure-related injuries, especially those of a hematopoietic nature, when tested in either rodents or nonhuman primates. We investigated the nature of injuries and the possible protective effects of GT3 within select organ systems/tissues caused by both non-lethal level (4.0 Gy), as well as potentially lethal level (5.8 Gy) of ionizing radiation, delivered as total-body or partial-body exposure. Results indicated that the most severe, dose-dependent injuries occurred within those organ systems with strong self-renewing capacities (e.g., the lymphohematopoietic and gastrointestinal systems), while in other tissues (e.g., liver, kidney, lung) endowed with less self-renewal, the pathologies noted tended to be less pronounced and less dependent on the level of exposure dose or on the applied exposure regimen. The prophylactic use of the test nutraceutical, GT3, appeared to limit the extent of irradiation-associated pathology within blood forming tissues and, to some extent, within the small intestine of the gastrointestinal tract. No distinct, global pattern of bodily protection was noted with the agent’s use, although a hint of a possible radioprotective benefit was suggested not only by a lessening of apparent injury within select organ systems, but also by way of noting the lack of early onset of moribundity within select GT3-treated animals.
Risk analysis for subsequent fracture of osteoporotic fractures in Chinese women over age 60: a nationwide cross-sectional study
Authors: Tang Nan , Gao Ling , Song Jie , Li Yeyuan , Song Mi , Qiu Chen , Shao Mengqi , Chen Jingru , Li Shan , Wang Qingmei , Su Qingqing , Gao Yuan 
Published: June 2024

AbstractPrevention of subsequent fracture is a major public health challenge in the field of osteoporosis prevention and treatment, and older women are at high risk for osteoporotic fractures. This study aimed to examine factors associated with subsequent fracture in older Chinese women with osteoporosis. We collected data on 9212 older female patients with osteoporotic fractures from 580 medical institutions in 31 provinces of China. Higher odds of subsequent fractures were associated with age of 70–79 years (OR 1.218, 95% CI 1.049–1.414), age ≥ 80 (OR 1.455, 95% CI 1.222–1.732), index fracture site was vertebrae (OR 1.472, 95% CI 1.194–1.815) and hip (OR 1.286, 95% CI 1.041–1.590), index fracture caused by fall (OR 1.822, 95% CI 1.281–2.591), strain (OR 1.587, 95% CI 1.178–2.139), no inducement (OR 1.541, 95% CI 1.043–2.277), and assessed as high risk of fracture (OR 1.865, 95% CI 1.439–2.416), BMD T-score ≤ −2.5 (OR 1.725, 95% CI 1.440–2.067), history of surgery (OR 3.941, 95% CI 3.475–4.471) and trauma (OR 8.075, 95% CI 6.941–9.395). Low risk of fall (OR 0.681, 95% CI 0.513–0.904), use of anti-osteoporosis medication (AOM, OR 0.801, 95% CI 0.693–0.926), and women who had received fall prevention health education (OR 0.583, 95% CI 0.465–0.730) associated with lower risk. The areas under the curve of the prediction model was 0.818. The sensitivity was 67.0% and the specificity was 82.0%. The prediction model showed a good ability to predict the risk of subsequent fracture in older women with osteoporotic fractures and are suitable for early self-measurement which may benefit post-fracture management.
Analysis of deformation and failure mechanism of sandwich beams with lattice core under three-point bending load
Authors: Sefidi Mahdi , Taghipoor Hossein 
Published: June 2024

AbstractThis paper investigates sandwich beams with lattice cores under quasi-static bending, owing to their lightweight nature and high energy absorption capabilities. Utilizing analytical methods governing beams, an investigation into their failure mechanisms is conducted, incorporating experimental and numerical results. The influence of thickness and core cell sizes on energy absorption are examined. The analysis delves into the elastic and plastic behavior of the beam, which is refined and validated against the numerical and experimental tests and failure modes of sandwich panel beams. The alignment of analytical predictions with both experimental and numerical results in terms of mean forces, and energy absorptions was remarkably precise. Moreover, evidence has been presented that the face yield and core shear failure regions are significantly impacted by variances in core dimensions. Additionally, the thickness of core cell strands was found to be pivotal in influencing the compressive and shear strengths of sandwich panel beams.
Mitigating machine learning bias between high income and low–middle income countries for enhanced model fairness and generalizability
Authors: Yang Jenny , Clifton Lei , Dung Nguyen Thanh , Phong Nguyen Thanh , Yen Lam Minh , Thy Doan Bui Xuan , Soltan Andrew A. S. , Thwaites Louise , Clifton David A. 
Published: June 2024

AbstractCollaborative efforts in artificial intelligence (AI) are increasingly common between high-income countries (HICs) and low- to middle-income countries (LMICs). Given the resource limitations often encountered by LMICs, collaboration becomes crucial for pooling resources, expertise, and knowledge. Despite the apparent advantages, ensuring the fairness and equity of these collaborative models is essential, especially considering the distinct differences between LMIC and HIC hospitals. In this study, we show that collaborative AI approaches can lead to divergent performance outcomes across HIC and LMIC settings, particularly in the presence of data imbalances. Through a real-world COVID-19 screening case study, we demonstrate that implementing algorithmic-level bias mitigation methods significantly improves outcome fairness between HIC and LMIC sites while maintaining high diagnostic sensitivity. We compare our results against previous benchmarks, utilizing datasets from four independent United Kingdom Hospitals and one Vietnamese hospital, representing HIC and LMIC settings, respectively.