bluuebunny/crossref_metadata_2025_split huggingface dataset:
Plasmodium falciparum–infected erythrocytes induce NF-κB regulated inflammatory pathways in human cerebral endothelium
Authors: Tripathi Abhai K. , Sha Wei , Shulaev Vladimir , Stins Monique F. , Sullivan David J. 
Published: August 2009

AbstractCerebral malaria is a severe multifactorial condition associated with the interaction of high numbers of infected erythrocytes to human brain endothelium without invasion into the brain. The result is coma and seizures with death in more than 20% of cases. Because the brain endothelium is at the interface of these processes, we investigated the global gene responses of human brain endothelium after the interaction with Plasmodium falciparum–infected erythrocytes with either high- or low-binding phenotypes. The most significantly up-regulated transcripts were found in gene ontology groups comprising the immune response, apoptosis and antiapoptosis, inflammatory response, cell-cell signaling, and signal transduction and nuclear factor κB (NF-κB) activation cascade. The proinflammatory NF-κB pathway was central to the regulation of the P falciparum–modulated endothelium transcriptome. The proinflammatory molecules, for example, CCL20, CXCL1, CXCL2, IL-6, and IL-8, were increased more than 100-fold, suggesting an important role of blood-brain barrier (BBB) endothelium in the innate defense during P falciparum–infected erythrocyte (Pf-IRBC) sequestration. However, some of these diffusible molecules could have reversible effects on brain tissue and thus on neurologic function. The inflammatory pathways were validated by direct measurement of proteins in brain endothelial supernatants. This study delineates the strong inflammatory component of human brain endothelium contributing to cerebral malaria.
Immunogenicity of blood group antigens: a mathematical model corrected for antibody evanescence with exclusion of naturally occurring and pregnancy-related antibodies
Authors: Tormey Christopher A. , Stack Gary 
Published: August 2009

Abstract
Blood group antigen immunogenicity is a crucial factor in red blood cell alloimmunization. Previous calculated estimates of immunogenicity suffered from several key shortcomings. To address these issues we have (1) introduced a correction factor for antibody persistence rates into traditional immunogenicity calculations, (2) calculated immunogenicities only in men to eliminate pregnancy-related antibodies, and (3) excluded antibodies reactive only at room temperature to minimize the contribution of naturally occurring antibodies. With these corrections, we have calculated the immunogenicities of common blood group antigens using data collected on clinically significant alloantibodies (n = 452) in a male patient population. We observed a 3- to 5-fold increase in immunogenicity for some antigens (ie, Jka, Cw, Lua) and smaller changes in others compared with traditionally calculated estimates. In addition, we have calculated the transfusion-related immunogenicities of antigens traditionally associated with naturally occurring antibodies (eg, anti-Lea, -Leb, -M, and -P1).
Karyotype-specific microRNA signature in chronic lymphocytic leukemia
Authors: Visone Rosa , Rassenti Laura Z. , Veronese Angelo , Taccioli Cristian , Costinean Stefan , Aguda Baltazar D. , Volinia Stefano , Ferracin Manuela , Palatini Jeff , Balatti Veronica , Alder Hansjuerg , Negrini Massimo , Kipps Thomas J. , Croce Carlo M. 
Published: August 2009

Abstract
Chromosomal abnormalities, immunoglobulin heavy chain variable–region (IGHV) gene mutation status, and ζ-associated protein 70 (ZAP-70) expression levels have independent prognostic relevance in chronic lymphocytic leukemia (CLL); however, their concordance is variable. Because deregulation of microRNAs has been linked to disease initiation and progression in CLL, we studied the value of the microRNAs as a signature for CLL patients with specific chromosomal abnormalities. We identified 32 microRNAs able to discriminate the 11q deletion, 17p deletion, trisomy 12, 13q deletion, and normal karyotype cytogenetic subgroups. The expression values of 9 among the 32 microRNAs (miR-151-3p, miR-34a, miR-29c, miR-29b, miR-155, miR-148a, miR-146a, miR-146b5p, and miR-640) were correlated with gene expression data from the same samples to assess their biologic impact on CLL. In this study we also found that IGHV unmutated, high expression of ZAP-70 protein, and low expression of the miR-223, miR-29c, miR-29b, and miR-181 family were strongly associated with disease progression in CLL cases harboring 17p deletion, whereas in those harboring trisomy 12 only high expression of the miR-181a, among the analyzed parameters, suggested more aggressive disease. Thus, the use of the microRNA-based classifications may yield clinically useful biomarkers of tumor behavior in CLL.
Renal impairment in a rural African antiretroviral programme
Authors: Franey Cara , Knott Deborah , Barnighausen Till , Dedicoat Martin , Adam Ahmed , Lessells Richard J , Newell Marie-Louise , Cooke Graham S 
Published: August 2009

Abstract

Background
There is little knowledge regarding the prevalence and nature of renal impairment in African populations initiating antiretroviral treatment, nor evidence to inform the most cost effective methods of screening for renal impairment. With the increasing availability of the potentially nephrotixic drug, tenofovir, such information is important for the planning of antiretroviral programmes

Methods
(i) Retrospective review of the prevalence and risk factors for impaired renal function in 2189 individuals initiating antiretroviral treatment in a rural African setting between 2004 and 2007 (ii) A prospective study of 149 consecutive patients initiating antiretrovirals to assess the utility of urine analysis for the detection of impaired renal function. Severe renal and moderately impaired renal function were defined as an estimated GFR of ≤ 30 mls/min/1.73 m2 and 30–60 mls/min/1.73 m2 respectively. Logistic regression was used to determine odds ratio (OR) of significantly impaired renal function (combining severe and moderate impairment). Co-variates for analysis were age, sex and CD4 count at initiation.

Results
(i) There was a low prevalence of severe renal impairment (29/2189, 1.3% 95% C.I. 0.8–1.8) whereas moderate renal impairment was more frequent (287/2189, 13.1% 95% C.I. 11.6–14.5) with many patients having advanced immunosuppression at treatment initiation (median CD4 120 cells/μl). In multivariable logistic regression age over 40 (aOR 4.65, 95% C.I. 3.54–6.1), male gender (aOR 1.89, 95% C.I. 1.39–2.56) and CD4<100 cells/ul (aOR 1.4, 95% C.I. 1.07–1.82) were associated with risk of significant renal impairment (ii) In 149 consecutive patients, urine analysis had poor sensitivity and specificity for detecting impaired renal function.

Conclusion
In this rural African setting, significant renal impairment is uncommon in patients initiating antiretrovirals. Urine analysis alone may be inadequate for identification of those with impaired renal function where resources for biochemistry are limited.
Agriculture and the promotion of insect pests: rice cultivation in river floodplains and malaria vectors in The Gambia
Authors: Jarju Lamin BS , Fillinger Ulrike , Green Clare , Louca Vasilis , Majambere Silas , Lindsay Steven W 
Published: August 2009

Abstract

Background
Anthropogenic modification of natural habitats can create conditions in which pest species associated with humans can thrive. In order to mitigate for these changes, it is necessary to determine which aspects of human management are associated with the promotion of those pests. Anopheles gambiae, the main Africa malaria vector, often breeds in rice fields. Here the impact of the ancient practice of 'swamp rice' cultivation, on the floodplains of the Gambia River, on the production of anopheline mosquitoes was investigated.

Methods
Routine surveys were carried out along 500 m transects crossing rice fields from the landward edge of the floodplains to the river during the 2006 rainy season. Aquatic invertebrates were sampled using area samplers and emergence traps and fish sampled using nets. Semi-field experiments were used to investigate whether nutrients used for swamp rice cultivation affected mosquito larval abundance.

Results
At the beginning of the rainy season rice is grown on the landward edge of the floodplain; the first area to flood with fresh water and one rich in cattle dung. Later, rice plants are transplanted close to the river, the last area to dry out on the floodplain. Nearly all larval and adult stages of malaria vectors were collected 0–100 m from the landward edge of the floodplains, where immature rice plants were grown. These paddies contained stagnant freshwater with high quantities of cattle faeces. Semi-field studies demonstrated that cattle faeces nearly doubled the number of anopheline larvae compared with untreated water.

Conclusion
Swamp rice cultivation creates ideal breeding sites for malaria vectors. However, only those close to the landward edge harboured vectors. These sites were productive since they were large areas of standing freshwater, rich in nutrients, protected from fish, and situated close to human habitation, where egg-laying mosquitoes from the villages had short distances to fly. The traditional practice of 'swamp rice' cultivation uses different bodies of water on the floodplains to cultivate rice during the rainy season. A consequence of this cultivation is the provizion of ideal conditions for malaria vectors to thrive. As the demand for locally-produced rice grows, increased rice farming will generate great numbers of vectors; emphasizing the need to protect local communities against malaria.
Effect of ageing on CMV-specific CD8 T cells from CMV seropositive healthy donors
Authors: Pita-Lopez María Luisa , Gayoso Inmaculada , DelaRosa Olga , Casado Javier G , Alonso Corona , Muñoz-Gomariz Elisa , Tarazona Raquel , Solana Rafael 
Published: August 2009

Abstract

Background
Ageing is associated with changes in the immune system with substantial alterations in T-lymphocyte subsets. Cytomegalovirus (CMV) is one of the factors that affect functionality of T cells and the differentiation and large expansions of CMV pp65-specific T cells have been associated with impaired responses to other immune challenges. Moreover, the presence of clonal expansions of CMV-specific T cells may shrink the available repertoire for other antigens and contribute to the increased incidence of infectious diseases in the elderly. In this study, we analyse the effect of ageing on the phenotype and frequency of CMV pp65-specific CD8 T cell subsets according to the expression of CCR7, CD45RA, CD27, CD28, CD244 and CD85j.

Results
Peripheral blood from HLA-A2 healthy young, middle-aged and elderly donors was analysed by multiparametric flow cytometry using the HLA-A*0201/CMV pp65495–504 (NLVPMVATV) pentamer and mAbs specific for the molecules analysed. The frequency of CMV pp65-specific CD8 T cells was increased in the elderly compared with young and middle-aged donors. The proportion of naïve cells was reduced in the elderly, whereas an age-associated increase of the CCR7null effector-memory subset, in particular those with a CD45RAdim phenotype, was observed, both in the pentamer-positive and pentamer-negative CD8 T cells. The results also showed that most CMV pp65-specific CD8 T cells in elderly individuals were CD27/CD28 negative and expressed CD85j and CD244.

Conclusion
The finding that the phenotype of CMV pp65-specific CD8 T cells in elderly individuals is similar to the predominant phenotype of CD8 T cells as a whole, suggests that CMV persistent infections contributes to the age-related changes observed in the CD8 T cell compartment, and that chronic stimulation by other persistent antigens also play a role in T cell immunosenescence. Differences in subset distribution in elderly individuals showing a decrease in naive and an increase in effector-memory CD8 T cells may be relevant in the age-associated defective immune response.
Kidney retrieval after sudden out of hospital refractory cardiac arrest: a cohort of uncontrolled non heart beating donors
Authors: Fieux Fabienne , Losser Marie-Reine , Bourgeois Eric , Bonnet Francine , Marie Olivier , Gaudez François , Abboud Imad , Donay Jean-Luc , Roussin France , Mourey François , Adnet Frédéric , Jacob Laurent 
Published: August 2009

Abstract
Introduction
To counter the shortage of kidney grafts in France, a non heart beating donor (NHBD) program has recently been implemented. The aim of this study was to describe this pilot program for kidney retrieval from "uncontrolled" NHBD meaning those for whom attempts of resuscitation after a witnessed out-of-hospital cardiac arrest (CA) have failed (Maastricht 1 and 2), in a centre previously trained for retrieval from brain dead donors.

Methods
A prospective, monocentric, descriptive study concerning NHBD referred to our institution from February 2007 to June 2008. The protocol includes medical transport of refractory CA under mechanical ventilation and external cardiac massage, kidney protection by insertion of an intraaortic double-balloon catheter (DBC) with perfusion of a hypothermic solution, kidney retrieval and kidney preservation in a hypothermic pulsatile perfusion machine.

Results
122 potential NHBD were referred to our institution after a mean resuscitation attempt of 35 minutes (20–95). Regarding the contraindications, 63 were finally accepted and 56 had the DBC inserted. Organ retrieval was performed in 27 patients (43%) and 31 kidneys out of the 54 procured (57%) have been transplanted. Kidney transplantation exclusion was related to family refusal (n = 15), past medical history, time constraints, viral serology, high vascular ex vivo resistance of the graft and macroscopic abnormalities. The 31 kidneys exhibited an expected high delayed graft function rate (92%). Despite these initial results transplanted kidney had good creatinine clearance at six months (66 ± 24 ml/min) with a 89% graft survival rate at six months.

Conclusions
This study shows the feasibility and efficacy of an organ procurement program targeting NHBD allowing a 10% increase in the kidney transplantation rate over 17 months. With a six months follow-up period, the results of transplanted kidney function were excellent.
Responses to temperature variation: integration of thermoregulation and metabolism in vertebrates
Authors: Seebacher Frank 
Published: August 2009

SUMMARY
Many vertebrates regulate their body temperature in response to thermal variability of the environment. Endotherms maintain relatively stable body temperatures by adjusting metabolic heat production in response to varying environmental heat loads. Although most ectotherms do not display adaptive thermogenesis, they do acclimate cellular metabolism to compensate for environmental temperature variation. The components of the thermoregulatory systems in endotherms and ectotherms are evolutionarily conserved, and I suggest that metabolic acclimation in ectotherms relies on the same regulatory pathways as adaptive thermogenesis in endotherms. Both groups rely on transient receptor potential ion channels to sense environmental temperatures. Thermosensory (afferent) information is relayed to the hypothalamus, which initiates a sympathetic efferent response. Cardiovascular responses to heat are similar in ectothermic crocodiles and in mammals, and are mediated by the autonomic nervous system in both cases. The sympathetic nervous system also modulates cellular metabolism by inducing expression of the transcriptional regulator peroxisome proliferator activated receptor γ coactivator 1α (PGC-1α), which interacts with a range of transcription factors that control glycolysis, fatty acid oxidation, gluconeogenesis, mitochondrial biogenesis and bioenergetics, and metabolic rate. PGC-1α is best known from mammalian model species but there is increasing evidence that it is also instrumental in non-mammalian vertebrates. Hence, endothermic adaptive thermogenesis may result from the same regulatory pathways as ectothermic metabolic acclimation, and both could be considered as adaptive metabolic responses to temperature variation.
Endurance capacity of mice selectively bred for high voluntary wheel running
Authors: Meek Thomas H. , Lonquich Brian P. , Hannon Robert M. , Garland Theodore 
Published: August 2009

SUMMARYMice from four lines bred for high voluntary wheel activity run ∼3-fold more revolutions per day and have elevated maximal oxygen consumption during forced treadmill exercise, as compared with four unselected control (C) lines. We hypothesized that these high runner (HR) lines would have greater treadmill endurance-running capacity. Ninety-six mice from generation 49 were familiarized with running on a motorized treadmill for 3 days. On days 4 and 5, mice were given an incremental speed test (starting at 20 m min–1, increased 1.5 m min–1 every 2 min)and endurance was measured as the total time or distance run to exhaustion. Blood samples were taken to measure glucose and lactate concentrations at rest during the photophase, during peak nightly wheel running, and immediately following the second endurance test. Individual differences in endurance time were highly repeatable between days (r=0.79), and mice tended to run longer on the second day (paired t-test, P&lt;0.0001). Blood glucose following the treadmill test was low for all animals (∼53 mg dl–1) and lactate was high (∼6.5 mmol l–1), suggesting that exhaustion occurred. The HR lines had significantly higher endurance than the C lines (1-tailed P&lt;0.05),whether or not body mass was used as a covariate in the analysis. The relationship between line means for wheel running and treadmill endurance differed between the sexes, reinforcing previous studies that indicate sex-specific responses to selective breeding. HR mice appear to have a higher endurance capacity than reported in the literature for inbred strains of mice or transgenics intended to enhance endurance.
Orientation of lizards in a Morris water-maze: roles of the sun compass and the parietal eye
Authors: Foà Augusto , Basaglia Francesca , Beltrami Giulia , Carnacina Margherita , Moretto Elisa , Bertolucci Cristiano 
Published: August 2009

SUMMARYThe present study examined for the first time whether a Morris water-maze can be used to explore compass and other orientation mechanisms in the ruin lizard Podarcis sicula. In the open field, during sunny days, lizards were individually trained to swim from the center of the water maze onto a hidden platform (the goal), positioned at the periphery of the maze in a single compass direction. The goal was invisible because it was placed just beneath the water surface and the water was rendered opaque. The results showed that lizards learn to swim directly towards the hidden goal under the sun in the absence of visual feature cues. We further examined whether the observed orientation response would be due to lizards learning the spatial position of the goal relative to the sun's azimuth, i.e. to the use of a time-compensated sun compass. Lizards reaching learning criteria were subjected to 6 h clock-shift (fast or slow), and tested for goal orientation in the Morris water-maze. Results demonstrated that the learned orientation response is mediated by a time-compensated sun compass. Further investigations provided direct evidence that in ruin lizards an intact parietal eye is required to perform goal orientation under the sun inside a Morris water-maze,and that other brain photoreceptors, like the pineal or deep brain photoreceptors, are not involved in orientation.
Information from the geomagnetic field triggers a reduced adrenocortical response in a migratory bird
Authors: Henshaw Ian , Fransson Thord , Jakobsson Sven , Jenni-Eiermann Susanne , Kullberg Cecilia 
Published: August 2009

SUMMARY
Long-distance migrants regularly pass ecological barriers, like the Sahara desert, where extensive fuel loads are necessary for a successful crossing. A central question is how inexperienced migrants know when to put on extensive fuel loads. Beside the endogenous rhythm, external cues have been suggested to be important. Geomagnetic information has been shown to trigger changes in foraging behaviour and fuel deposition rate in migratory birds. The underlying mechanism for these adjustments, however, is not well understood. As the glucocorticoid hormone corticosterone is known to correlate with behaviour and physiology related to energy regulation in birds, we here investigated the effect of geomagnetic cues on circulating corticosterone levels in a long-distance migrant. Just as in earlier studies, juvenile thrush nightingales (Luscinia luscinia) caught during autumn migration and exposed to the simulated geomagnetic field of northern Egypt increased food intake and attained higher fuel loads than control birds experiencing the ambient magnetic field of southeast Sweden. Our results further show that experimental birds faced a reduced adrenocortical response compared with control birds, thus for the first time implying that geomagnetic cues trigger changes in hormonal secretion enabling appropriate behaviour along the migratory route.
Predicting the rate of oxygen consumption from heart rate in barnacle geeseBranta leucopsis: effects of captivity and annual changes in body condition
Authors: Portugal Steven J. , Green Jonathan A. , Cassey Phillip , Frappell Peter B. , Butler Patrick J. 
Published: August 2009

SUMMARYQuantifying a relationship between heart rate (fH) and rate of oxygen consumption(V̇O2) allows the estimation of V̇O2from fH recordings in free-ranging birds. It has been proposed that this relationship may vary throughout an animal's annual cycle,due to changes in physiological status. Barnacle geese, Branta leucopsis, provide an ideal model to test this hypothesis, as they exhibit significant intra-annual variability in body mass, body composition and abdominal temperature, even in captivity. Heart rate data loggers were implanted in 14 captive barnacle geese, and at six points in the year the relationship between fH and V̇O2 was determined. The fH/V̇O2relationship was also determined in seven moulting wild barnacle geese to examine whether relationships from captive animals might be applicable to wild animals. In captive barnacle geese, the fH/V̇O2relationship was significantly different only between two out of the six periods when the relationship was determined (late September–early October and November). Accounting for changes in physiological parameters such as body mass, body composition and abdominal temperature did not eliminate this difference. The relationship between fH and V̇O2 obtained from wild geese was significantly different from all of the relationships derived from the captive geese, suggesting that it is not possible to apply calibrations from captive birds to wild geese. However, the similarity of the fH and V̇O2 relationship derived during moult in the captive geese to those during the remainder of the annual cycle implies it is not unreasonable to assume that the relationship between fH/V̇O2during moult in the wild geese is indicative of the relationship throughout the remainder of the annual cycle.