bluuebunny/crossref_metadata_2025_split huggingface dataset:
Multi-cancer early detection (MCED) test performance in cancer survivors.
Authors: Marinac Catherine , O'Donnell Elizabeth , Shaknovich Rita , Clarke Christina A. , Walia Guneet , Chung Karen , Farese Jennifer , Lopatin Margarita , Fung Eric T. , Venstrom Jeffrey M. , Klein Eric A. , Karlitz Jordan J. 
Published: May 2024

1628 Background: Cancer survivors (CS) are at risk for recurrent or new primary tumors in any organ, but there is lack of clear guidance and options for long-term surveillance. We analyzed the performance of a blood-based MCED test that detects cancer-specific methylation patterns and predicts cancer signal origin (CSO) in CS in the PATHFINDER study (PF; NCT04241796). Methods: PF enrolled6662 participants (pts) ≥50 yr without clinical suspicion of cancer; 6578 samples were analyzed with a refined MCED test. Pts were stratified by CS status (treated cancer >3 yr prior to study vs no prior cancer); in CS, prior cancer type and time from diagnosis were recorded. Cancers diagnosed during PF were classified as recurrent or new primaries. Positive predictive value (PPV), number needed to screen (NNTS), and CSO accuracy were assessed. Results: CS comprised 25% (1609/6578) of pts analyzed; 73% were female. Median age was 66 yr; age at prior diagnosis was 8% <40, 22% 40-49, 70% ≥50 yr. Most common prior cancers were breast (749, 47%), melanoma (163, 10%) and prostate (141, 9%). A higher proportion of pts with cancer diagnosis was observed in CS vs those with no prior cancer (Table). Among 20 CS with cancer signal detected, 10 cancers were diagnosed in 9 pts; 5 recurrent (all metastatic breast) and 5 new primaries (uterine stage 1 [found as incidental lesion on imaging during MCED-triggered workup for recurrent breast cancer], sarcoma stage 2, ovarian stage 3, lymphoma and CRC stage 4). During 1-yr follow-up in those with negative MCED result, new cancer diagnoses in CS included 13 recurrences (all local) and 15 new primaries. Of the 13 new primaries with known stage, 46% were stage 1 (2 breast, 1 melanoma, 1 thyroid, 1 lymphoma, 1 lung), 31% stage 2 (2 lymphomas, 1 melanoma, 1 breast), 15% stage 3 (1 pancreas, 1 pleural mesothelioma), and 7% stage 4 (1 prostate). Yield, PPV, NNTS, and CSO accuracy were similar in CS and no prior cancer group. Years between MCED cancer detection and prior cancer in CS was 4-11 for recurrent and 8-15 for new primaries. Most (4/5) new primaries were cancers with no USPSTF-recommended screenings. Conclusions: The MCED test detected both cancer recurrences and new primaries in CS for whom multiple years had elapsed since their original diagnosis, potentially expanding surveillance options for this patient group. Cancers in CS not detected by MCED were predominantly early stage. Test performance was similar in those with and without a cancer history. Clinical trial information: NCT04241796 . [Table: see text]
Development and validation of RSClin N+ tool for hormone receptor-positive (HR+), HER2-negative (HER2-), node-positive breast cancer.
Authors: Pusztai Lajos , Hoag Jess R , Albain Kathy S. , Barlow William E. , Stemmer Salomon M. , Meisner Allison , Hortobagyi Gabriel N. , Shak Steven , Hayes Daniel F. , Rae James M. , Baehner Frederick , Sharma Priyanka , Kalinsky Kevin 
Published: May 2024

508 Background: The RSClin tool was developed to provide estimates of recurrence risk and absolute chemotherapy benefit for patients with HR+/HER2- node-negative breast cancer using the 21-gene recurrence score (RS) and clinicopathologic factors. For patients with node-positive disease, we developed a new tool (RSClin N+) to increase the prognostic and predictive utility of risk estimates by combining RS with clinicopathologic factors and menopausal status. Methods: We used Cox regression to estimate 5-year risk of invasive disease or death (iDFS) and likelihood ratio (LR) tests to compare fit of RSClin N+ with RS alone and clinicopathologic factors (tumor grade, tumor size, positive lymph nodes [N1/N2], age) alone in 5283 node-positive patients treated with chemoendocrine therapy (CET) vs endocrine therapy alone (ET) in the S8814 (n=367: N1=227, N2=140, all postmenopausal) and RxPONDER (n/N1=4916) trials. Data from both studies were pooled and stratified by study for postmenopausal models; premenopausal models were fit only on RxPONDER data. Absolute CET benefit across combination of covariate values was estimated as the difference between ET and CET risk estimates. Validation of RSClin N+ was performed in 592 Nmic/N1 patients in the Clalit registry real-world dataset. Results: For pre- and postmenopausal patients, RSClin N+ provided significantly more prognostic information for iDFS than RS or clinicopathologic factors alone (LR Chi-square p<0.05). In postmenopausal patients, RS and clinicopathologic factors were independently prognostic, but only RS showed interaction with CET benefit (p=0.016). Absolute CET benefit for iDFS ranged from <0.1% to 21.5% as the RS increased from 0 to 50. Table shows examples of risk stratification and predicted benefit by RS within clinical low and high risk patients. In premenopausal patients, both RS and clinicopathologic factors remained prognostic but no interaction was observed between RS and CET.In external validation, RSClin N+ risk estimates were concordant with (Lin’s concordance=0.92) and prognostic for observed risk (HR 1.75; 95% CI 1.38 to 2.20). Conclusions: The RSClin N+ model provides improved estimates of prognostic risk and absolute CET benefit than clinical or genomic data alone in node-positive, HR+/HER2- breast cancer and could be used in patient counseling. [Table: see text]
Short-term risk of recurrence in patients (pts) with HR+/HER2− early breast cancer (EBC) treated with endocrine therapy (ET) in randomized clinical trials (RCTs): A meta-analysis.
Authors: Curigliano Giuseppe , Ciruelos Eva , Kalinsky Kevin , Proudman David , Nellesen Dave , Lopez Priscilla , Kaufhold Samantha , Shane Olivia , Kwok Adrienne , Ganapathy Vaidyanathan , Amefule Adaeze Q. , Lteif Agnes , Fasching Peter A. , Hamilton Erika P. 
Published: May 2024

541 Background: ET ± chemotherapy (CT) has been standard of care for HR+/HER2− EBC for ≈20 yrs, yet pts continue to experience disease recurrences up to decades after completing adjuvant (adj) treatment (tx). There is little information on early recurrences (≤5 yrs) in the more recent tx landscape, which includes optimized local tx and improved systemic tx. This meta-analysis of ET arms in RCTs in pts with HR+/HER2− EBC seeks to fill this gap by evaluating 3- and 5-yr risk of recurrence (RoR). Methods: A systematic literature review identified RCTs that met study criteria: phase 3 trials that included pts with HR+/HER2− EBC who received 5 yrs of adj ET (aromatase inhibitors ± ovarian suppression or tamoxifen) ± CT with invasive disease-free survival (iDFS) or disease-free survival (DFS) reported at 3 and/or 5 yrs post tx randomization. Neoadj or extended ET trials were excluded. Survival curves were digitized for iDFS estimates. Meta-analysis of proportions, using a random-effects model with double arcsine transformation, was used to evaluate pooled 3-yr RoR (100 − iDFS/DFS rate) for all pts, by lymph node (LN) status (N0: 0, N1: 1-3, N+ any positive LN), and 5-yr RoR where available. The 3-yr RoR across ET arms in a subset of only adj cyclin-dependent kinase 4/6 inhibitor (CDK4/6i) trials was evaluated given the recency of these RCTs. Results: RoR estimates were obtained from 14 trials (across 23 distinct ET-only arms), including 4 adj CDK4/6i trials that met study criteria; studies included pts with stage I-III disease ± nodal involvement. Pooled 3- and 5-yr RoR for the overall HR+/HER2− EBC pt population regardless of LN/stage were 7% and 12%, respectively. In trials with nodal status subgroups, pooled 3-yr RoR was 5% for N0, 6% for N1, and 13% for N+ pts. In a sensitivity analysis excluding cohorts with low to medium risk scores based on genomic testing, pooled 3-yr RoR estimates for N0 and N1 subgroups were 7% and 10%, respectively. Meta-analysis across ET arms of CDK4/6i trials revealed 3-yr RoR of 15% (all stage I-III) and 10% (N0). Conclusions: Despite the potential for late recurrence of HR+/HER2− EBC, short-term RoR is considerable and accumulates over time for these pts treated with ET ± CT in the adj setting. These findings highlight the unmet need for tolerable tx escalation among at-risk pts, including node-positive and select N0 pts with high-risk features.
Clinical outcomes of patients with HER2-positive microinvasive breast cancer.
Authors: Shin Yeokyeong , Lee Soo-Young , Jeong Hyehyun , Lee Hee Jin , Gong Gyungyub , Kim Hee Jeong , Lee Jong Won , Son Byung-Ho , Ko BeomSeok , Kim Jisun , Ahn Jin-Hee , Jung Kyung Hae , Kim Sung-Bae , Lee Sae Byul , Jeong Jae Ho 
Published: May 2024

544 Background: Although previous studies have reported that adjuvant trastuzumab with paclitaxel resulted in excellent survival outcomes in small, node-negative HER2-positive breast cancer, the necessity of adjuvant chemotherapy in HER2-positive microinvasive breast cancer (MIBC) remains controversial. Methods: Between January 2000 and January 2020, women with curatively resected pT1mi N0 and/or N1mi in Asan Medical Center were retrospectively identified and their survival outcomes including invasive disease-free survival (IDFS, excluding second primary cancer), distant recurrence-free survival (DRFS), and overall survival (OS) and the effect of adjuvant chemotherapy were analyzed. Results: A total of 833 patients were included. The median age was 51 years, and 51% (n = 426) were premenopausal. Pathologic nodal stage was pN0 in 96% (n = 799) and pN1mi in 0.7% (n = 6), and estrogen receptor (ER) was positive in 30% (n = 247). Adjuvant chemotherapy was administered to 18% (n = 147) of patients, of which 95% were fluorouracil-based. Six patients (0.7%) received adjuvant trastuzumab. With the median follow-up of 118.7 months, the 8-year IDFS and DRFS rates were 90.6% (95% CI, 88.4-92.7), and 97.3% (95% CI, 96.1-98.4), respectively, and the 8-year OS were 98.6% (95% CI, 97.8-99.5). IDFS did not differ by adjuvant chemotherapy, as the 8-year IDFS rates for patients who did and did not receive adjuvant chemotherapy were 91.1% (95% CI, 86.6-95.8) and 90.3% (95% CI, 87.9-92.8), respectively ( p = 0.930). The lack of differences in IDFS by chemotherapy was consistent across subgroups including pre-/postmenopausal patients, grade 1-2/3 tumors, and ER-negative diseases. Conclusions: In HER2-positive MIBC, a clinically meaningful proportion of patients experience IDFS events with long-term follow-up. The role of modern adjuvant chemotherapy regimens, as well as the role of adjuvant trastuzumab, should be further explored in this early-stage patient population.
Deep learning-based quantitative assessment of tumor-infiltrating lymphocytes from hematoxylin and eosin-stained slides in triple-negative breast cancer: A prognostic study.
Authors: Kobayashi Takuma , Hatanaka Kanako C , Tomioka Nobumoto , Konishi Teppei , Grynkiewicz Mateusz , Komura Daisuke , Ishikawa Shumpei , Watanabe Kenichi , Takahashi Masato , Hatanaka Yutaka 
Published: May 2024

553 Background: Tumor-infiltrating lymphocytes (TILs) are pivotal in predicting responses to preoperative chemotherapy in triple-negative breast cancer. Yet, their clinical adoption as a diagnostic marker is limited by the challenge of achieving high accuracy with objective measures. This study introduces a novel AI-based method to quantitatively assess stromal TILs within the tumor bed using hematoxylin and eosin (H&E)-stained slides, examining their correlation with disease-free survival (DFS) and overall survival (OS). Methods: In this study, 68 cases of breast cancer with axillary lymph node metastasis at the time of resection were selected from a total of 3,902 resections conducted between 2002 and 2016. We then developed an AI-based model to detect the epithelium and lymphocytes (CD3/CD20) from H&E-stained slides. This model was trained using annotated datasets, which included 26,509 images of the epithelium and 12,273 images of lymphocytes. The tumor bed areas were precisely defined by pathologists. Subsequently, the AI model identified epithelial and lymphocyte regions within these predefined areas. The TILs score was then calculated as the ratio of the lymphocyte area to the total stromal area within the tumor bed, excluding the epithelial areas identified by the AI model. Finally, we assessed the prognostic significance of the TILs score for DFS and OS through ROC analysis and log-rank tests. Results: ROC analysis identified an optimal TILs score threshold of 0.0042 for both DFS and OS, with an AUC of 0.743 (95% CI, 0.622-0.864) for DFS and 0.686 (95% CI, 0.559-0.812) for OS. This threshold significantly stratified patients into groups with distinct DFS and OS outcomes (P=0.003 and P=0.008, respectively). Conclusions: AI quantification of TILs offers a promising prognostic tool in triple-negative breast cancer, enhancing the objectivity and clinical utility of pathological analyses. Accurate TILs measurement could revolutionize prognostication and treatment planning.
Impact of race/ethnicity on the MammaPrint genomic assay risk and prognosis in early breast cancer (EBC): A National Cancer Database (NCDB) analysis.
Authors: Patel Rima , Sheng Tianxiang , Diniz Marcio A. , Sparano Joseph A. , Tiersten Amy 
Published: May 2024

564 Background: The 21-gene Oncotype DX Recurrence Score (RS) and 70-gene MammaPrint (MP) assays provide prognostic information for distant recurrence and are used to guide chemotherapy use in hormone receptor (HR)-positive, HER2-negative EBC. Previous reports have demonstrated that Black women with low genomic risk (RS 0-25) have a higher recurrence risk than White women in the TAILORx (PMID: 32986828) and RxPONDER trials (SABCS 2023, abstract GS1-01), and that Black race was associated with worse overall survival (OS) in multivariate models including RS in the NCDB registry (PMID: 33649322).The goal of this study was to evaluate the impact of race/ethnicity on MP risk distribution and prognostic information provided by the MP assay in the NCDB cohort. Methods: Women with HR-positive EBC with tumor size up to 5 centimeters (T1-T2), 0-3 involved lymph nodes (LNs, N0-N1), diagnosed between 2009-2018, and who had available information on MP testing and OS in the NCDB 2019 dataset were identified. Patients (pt) were stratified by MP result of high or low risk. T-tests and chi-square tests were used to compare pt characteristics, while log-rank tests assessed differences in OS between the high- and low-risk MP groups, as well as across different racial/ethnic categories. Results: 6096 eligible women were included of whom 41.0% (N=2502) were MP high-risk and 59.0% (N=3594) MP low-risk. Overall, 82.7% of pts were Non-Hispanic White (NHW), 8.7% Non-Hispanic Black (NHB), 4.7% Hispanic (H), and the remainder other/unknown (O). A higher proportion of H and NHB pts had high MP results, p<0.0001. The MP high-risk group had a greater proportion of pts </= 50 years (p=0.0013) and larger tumors (p<0.0001) and higher grade (p<0.0001), but not LN positive (p=0.7649). The 5-year OS rates (and 95% Confidence Intervals) for the MP high and low-risk groups were 92.6% (91.6% - 93.7%) and 96.6% (95.9% - 97.2%), respectively, p<0.0001. There were no differences in OS based on race/ethnicity in the low-risk group with 5-year OS rates of 98.4% (96.1%-100%), 95.9% (93.3% - 98.6%), 96.4% (95.7% - 97.1%), and 99.2% (97.7% - 100%) for H, NHB, NHW and O, respectively, p=0.34. Similarly, in MP high-risk, race/ethnicity did not impact prognosis with OS rates of 92.6% (88.2% - 97.1%), 90.8% (87.2% - 94.5%), 92.8% (91.7% - 94.1%), and 95.8% (91.2% - 100%) for H, NHB, NHW and O groups, respectively, p=0.45. There was no significant interaction between race and MP for OS when accounting for age, tumor grade, tumor size, and LN status, p=0.75. Conclusions: NHB and H women were more likely to have high-risk MP results compared with NHW women in this NCDB cohort, although race/ethnicity did not impact prognosis for 5-year OS in either MP risk group. Limitations of this analysis include absence of information on recurrence and short follow up, as about one-half of recurrences in HR-positive EBC occur after 5 years.
Predictive markers of complete pathological response to neoadjuvant chemo-immunotherapy in triple negative breast cancer.
Authors: Cankar Kaja , Auprih Maša , Ovcaricek Tanja , Kovac Anja , Sarvari Natasa Snoj , Dobovisek Luka , Borstnar Simona 
Published: May 2024

e12650 Background: Results from the Keynote 522 clinical trial, which played a pivotal role in evaluating the efficacy of neoadjuvant pembrolizumab in combination with chemotherapy (NAICT), showed a significant improvement in pathological complete response (pCR) rates compared with chemotherapy alone. To date, no significant markers have been identified to predict pathological complete response to NAICT. The primary objective was to identify markers, both molecular and clinical, predictive of pCR to NAICT in a real-world clinical setting. Methods: The retrospective analysis included 38 consecutively treated pts with early stage TNBC who received NAICT including pembrolizumab at the Institute of Oncology, Ljubljana (OIL) between 4 January 2022 and 17 October 2023. Data collected from electronic medical records included tumour size, nodal status, UICC stage, BRCA status, systemic immune-inflammation index (SII) before NAICT and before surgery, and frequency and grade of immune-related adverse events (iAEs) (according to the Common Terminology Criteria for Adverse Events (CTCAE) version 5). In pts who completed surgical treatment, response to treatment was assessed by pathological examination of post-treatment surgical specimens. Descriptive statistical methods were used to summarise and describe the main characteristics. Pearson chi-squared test was used to analyse categorical variables and t-test to evaluate associations between continuous variables. Results: Of the 38 pts, 28 completed surgical treatment and were further analysed. Pathohistological examination of post-treatment surgical specimens revealed pCR in 11 pts (39.3%), with residual disease in 17 pts (60.7%). Of the 17 pts without pCR, 11 pts had RCB score 2 (64.7%) and 5 pts had score 3 (29.4%). The distribution of size, nodal status, UICC stage at diagnosis, BRCA status, frequency of iAEs in correlation with pCR is shown in the Table. A borderline correlation was found between pCR and SII at the start of pembrolizumab treatment (p=0.05). Age, tumour size, nodal status, UICC stage, BRCA status, AEs, SII before surgery were not found to be predictive of pCR. Conclusions: SII at the start of pembrolizumab was found to be a borderline significant marker predictive of pCR. Other characteristics evaluated did not correlate with pCR. [Table: see text]
EGFR mutation testing trends for patients with metastatic, non-squamous non-small cell lung cancer (non-SQ NSCLC) in Queensland, Australia from 2014-2021.
Authors: Yang Zane , Niranjan Navin , Guan Tracey , Mason Robert , Chan Bryan Anthony , Sanmugarajah Jasotha 
Published: May 2024

e13505 Background: Lung cancer is the leading cause of cancer-related mortality worldwide. Epidermal growth factor receptor (EGFR) is the most common actionable mutation in non-small cell lung cancer (NSCLC) with routine testing recommended globally. In late 2013, screening for EGFR mutations was publicly funded in Australia for metastatic non-SQ-NSCLC. However, timely EGFR results are not universally available, often limited by tissue quantity/quality or prolonged turnaround times. This in turn affects access to treatment and thus survival. Methods: We aimed to examine the rates of EGFR testing over time and explore factors impacting results. Cases were identified from the Queensland Oncology Repository, a clinical database consolidating diagnostic, treatment and outcome data for all Queenslanders with cancer through the Queensland Cancer Registry. Cases were included if they had metastatic non-SQ-NSCLC, EGFR testing available via Pathology Queensland, and no other metastatic solid organ cancer within 1 year. Primary outcomes were EGFR mutation testing rates and time from first biopsy to EGFR mutation result, stratified by year of diagnosis and rurality. Results: A total of 3369 cases were included, of which 2871 had EGFR testing. The EGFR mutant (mt) rate was 12.6%, while 16.1% of cases had no EGFR results. Of cases without a conclusive EGFR result, reasons included: 179 transitioned to best supportive care before testing, 208 with insufficient tissue for a conclusive result, and 155 without testing for unclear reasons. The average time from biopsy to EGFR result improved from 29.9 days in 2014 to 21.5 days in 2021, with no significant difference in time to result between major cities, regional or remote areas. Cases with no EGFR results were more prevalent in rural areas. The proportion of patients living in outer regional/remote areas with no EGFR result was 21.1% compared to 15.5% in those living in major cities/inner regional sites. This was a relative increase of 36.2% (95% CI: 10.1% - 68.6%), a significant result (χ2 = 7.7483, p=0.005). Cases with no EGFR results in outer regional and remote sites declined from 30.1% in 2014-2015 to 15.3% in 2020-2021. Conclusions: EGFR mutation testing and result time has improved since 2014. Though time to result was not affected by rurality, significantly more rural patients lacked conclusive EGFR data, highlighting a gap in access to care. The cumulative EGFR no result rate of 16% and result time of 24 days indicates health systems need to more rapidly adapt to new treatment paradigms, particularly in the era of targeted therapies. [Table: see text]