bluuebunny/crossref_metadata_2025_split huggingface dataset:
Clay resources in the Nelas region (Beira Alta), Portugal. A contribution to the characterization of potential raw materials for prehistoric ceramic production
Authors: Marques R. , Jorge A. , Franco D. , Dias M. I. , Prudêncio M. I. 
Published: September 2010

AbstractMineralogical and chemical compositions of residual and sedimentary clays (bulk and <2 μm fraction) from the Nelas region (schist, aplite-pegmatites, granites and Tertiary sediments from both Mondego River margins), Portugal, were studied, aiming to establish indicators for raw materials in ancient ceramic provenance studies. The mineralogy of bulk material does not provide a clear distinction between samples. Among clay minerals, kaolinite dominates, except in the aplite-pegmatites where illite prevails. Smectite was only found in sediments of the left river bank.A more successful result was the geochemical differentiation of clay types. The weathered schist presents greater enrichment in Cr, whereas the clay fraction of aplite-pegmatites shows enrichment in all the chemical elements studied. The sediments and weathered granites are not easy to differentiate; the best geochemical indicators are U (lower contents in clay-size fraction of sediments) and REE patterns in both bulk and clay-size fraction.
Red soils developed from Quaternary deposits on the Linkuo terrace, northern Taiwan
Authors: Shao Ping Hua , Shea Kai-Shuan , Wang Ming Kuang , Shau Yen Hong , Chiang Kai Yin , Tsao Tsung Ming 
Published: September 2010

AbstractThe Linkuo terrace, situated to the west of the Taipei Basin in NW Taiwan, has thick red soils that have been little studied. This paper aims to interpret the development of these soils through chemical and micromorphological investigations, and relate the soils to their palaeo-environments. The soil samples were air dried, crushed and passed through a 2 mm sieve, and then subjected to conventional soil chemical and physical analyses, together with clay mineralogical and morphological characterization. Pedons I and II were clay with low base saturation (BS), cation-exchange capacity (CEC), and exchangeable cations. The pH of pedons I and II ranged from 3.80 to 5.26. The low magnetic susceptibility of these soils indicates that no magnetite (Fe3O4) or maghemite (γ-Fe2O3) are present. X-ray diffraction patterns of the magnetic clay fraction showed lepidocrocite, goethite and hematite, the amounts of which may relate to water fluctuation in the soil environments. Illite, kaolinite and quartz are major clay minerals in the red soil clay fractions. The micromorphology of all horizons showed a great accumulation of Fe-oxides. The upper horizon showed darkened isotropic Fe-oxide materials, and lower horizon showed a black to reddish dense plasma with soil matrix. The groundmass of the oxic horizon is generally characterized by a homogeneous distribution of the different coarse and fine constituents. The thick (4 m depth) and homogeneous red soils of the Linkuo terrace were developed from fine sediments after the gradual subsidence of the Taipei Basin. Alarge amount of gravel was flushed from the Xindian River before the Taipei Basin subsided. The Linkuo red soils can be classified as mesic, Typic Kandiudox. From the chemical compositions of clay fractions and the red soil features, these red soils can be considered as lateritic red earths or red earths that do not reach the criteria for laterite.
Coexistence of pyrophyllite, I-S, R1 and NH4+-rich illite in Silurian black shales (Sierra de Albarracín, NE Spain): metamorphic vs. hydrothermal origin
Authors: Bauluz B. , Subías I. 
Published: September 2010

AbstractA set of Silurian black shales from Sierra de Albarracín (NE Spain) corresponding to two different sections was studied to determine the relative influence of diagenesis, igneous activity, and regional tectonics on the clay-mineral genesis. The coexistence of pyrophyllite, I-S interstratifications (R1), ammonium-rich illite, potassium illite, kaolin, and chlorite is not the result of prograde evolution during diagenesis – very low-grade metamorphism. Three different stages may be inferred: (1) sedimentation of black shales (Aeronian, Lower Silurian, to basal Ludfordian, Upper Silurian) and the subsequent diagenetic process producing the coexistence of quartz, illite, kaolinite, organic matter, etc.; (2) intrusion of andesitic sills producing hydrothermal alteration and crystallization of pyrophyllite, ammonium-rich illites, smectite, I-S R1 phases and jarosite; and (3) and folding of shales and sills and development of penetrative schistosity during the late Variscan leading to illite and paragonite recrystallization reaching the anchizone grade.
K-Ar, δ18O and REE constraints on the genesis of ammonium illite from the Harghita Bãi hydrothermal system, Romania
Authors: Clauer N. , Liewig N. , Bobos I. 
Published: September 2010

AbstractAmmonium illite and ammonium illite-smectite mixed layers, together with potassium illite, smectite and minute amounts of kaolinite were identified in hydrothermally altered andesite rocks from the Harghita Bãi area of the Eastern Carpathians, Romania. K-Ar dating and oxygen isotope tracing, as well as rare-earth elemental analyses were made to provide new information on the timing and crystal-chemical processes characterizing the crystallization and further evolution of these illite-type mineral phases.The combined results suggest the occurrence of hydrothermal activity in two distinct episodes with nucleation of two generations of illite-type particles of different chemistry and morphology. About 9.5 Ma ago, potassium illite crystallized in alteration halos of the porphyry Cu system, probably at a temperature of ~270ºC from fluids having a δ18O of ~2.9% (V-SMOW). Associated smectite seems to have precipitated slightly later in external alteration halos at a similar temperature, but from fluids depleted in alkalis and with a different δ18O. Alternately, ammonium-rich illite-smectite mixed layers formed very recently, less than ~1 million years ago at a temperature of ~90ºC from fluids of probable meteoric origin that altered the previously crystallized potassium illite, resulting in the crystallization of a new generation of ammonium illite-smectite mixed layers. Evidence of this dissolution-precipitation process is provided by a significant increase in the δ18O of the mixed-layer structures and by a significant change in their REE contents and distribution patterns. Occurrence of potassium in the ammonium-rich mixed layers probably relates to the progressive alteration of the first-generation potassium illite and a discrete concomitant take up of released K by the new NH4-rich interlayers of the ammonium mixed layered sequence.
The pathogenesis of Plasmodium falciparum malaria in humans: insights from splenic physiology
Authors: Buffet Pierre A. , Safeukui Innocent , Deplaine Guillaume , Brousse Valentine , Prendki Virginie , Thellier Marc , Turner Gareth D. , Mercereau-Puijalon Odile 
Published: September 2010

AbstractClinical manifestations of Plasmodium falciparum infection are induced by the asexual stages of the parasite that develop inside red blood cells (RBCs). Because splenic microcirculatory beds filter out altered RBCs, the spleen can innately clear subpopulations of infected or uninfected RBC modified during falciparum malaria. The spleen appears more protective against severe manifestations of malaria in naïve than in immune subjects. The spleen-specific pitting function accounts for a large fraction of parasite clearance in artemisinin-treated patients. RBC loss contributes to malarial anemia, a clinical form associated with subacute progression, frequent splenomegaly, and relatively low parasitemia. Stringent splenic clearance of ring-infected RBCs and uninfected, but parasite-altered, RBCs, may altogether exacerbate anemia and reduce the risks of severe complications associated with high parasite loads, such as cerebral malaria. The age of the patient directly influences the risk of severe manifestations. We hypothesize that coevolution resulting in increased splenic clearance of P. falciparum–altered RBCs in children favors the survival of the host and, ultimately, sustained parasite transmission. This analysis of the RBC–spleen dynamic interactions during P falciparum infection reflects both data and hypotheses, and provides a framework on which a more complete immunologic understanding of malaria pathogenesis may be elaborated.
Reduced-intensity conditioning significantly improves survival of patients with hemophagocytic lymphohistiocytosis undergoing allogeneic hematopoietic cell transplantation
Authors: Marsh Rebecca A. , Vaughn Gretchen , Kim Mi-Ok , Li Dandan , Jodele Sonata , Joshi Sarita , Mehta Parinda A. , Davies Stella M. , Jordan Michael B. , Bleesing Jack J. , Filipovich Alexandra H. 
Published: September 2010

AbstractRecent experience suggests that reduced-intensity conditioning (RIC) regimens can improve the outcomes of patients with hemophagocytic lymphohistiocytosis (HLH) undergoing allogeneic hematopoietic cell transplantation (HCT). However, studies directly comparing RIC to myeloablative conditioning (MAC) regimens are lacking. Forty patients with HLH underwent allogeneic HCT between 2003-2009 at Cincinnati Children's Hospital. Fourteen patients received MAC consisting of busulfan, cyclophosphamide, and antithymocyte globulin plus or minus etoposide. Twenty-six patients received RIC consisting of fludarabine, melphalan, and alemtuzumab. All patients engrafted. Acute graft-versus-host disease grades II to III occurred in 14% of MAC patients and 8% of RIC patients (P = .3171). Posttransplantation mixed donor/recipient chimerism developed in 18% of MAC patients and 65% of RIC patients (P = .0110). The majority of patients with mixed chimerism received intervention with reduction of immune suppression plus or minus donor lymphocyte infusion or stem cell boost, which stabilized or increased donor contribution to hematopoiesis and prevented relapse of HLH in all but 1 patient. Grade II to III graft-versus-host disease occurred in 5 of 14 RIC patients after donor lymphocyte infusion. The overall estimated 3-year survival after HCT was 43% (confidence interval = ± 26%) for MAC patients and 92% (confidence interval = ± 11%) for RIC patients (P = .0001). We conclude that RIC significantly improves the outcome of patients with HLH undergoing allogeneic HCT.
RGS/Gi2α interactions modulate platelet accumulation and thrombus formation at sites of vascular injury
Authors: Signarvic Rachel S. , Cierniewska Aleksandra , Stalker Timothy J. , Fong Karen P. , Chatterjee Manash S. , Hess Paul R. , Ma Peisong , Diamond Scott L. , Neubig Richard R. , Brass Lawrence F. 
Published: September 2010

AbstractAlthough much is known about extrinsic regulators of platelet function such as nitric oxide and prostaglandin I2 (PGI2), considerably less is known about intrinsic mechanisms that prevent overly robust platelet activation after vascular injury. Here we provide the first evidence that regulators of G-protein signaling (RGS) proteins serve this role in platelets, using mice with a G184S substitution in Gi2α that blocks RGS/Gi2 interactions to examine the consequences of lifting constraints on Gi2-dependent signaling without altering receptor:effector coupling. The results show that the Gi2α(G184S) allele enhances platelet aggregation in vitro and increases platelet accumulation after vascular injury when expressed either as a global knock-in or limited to hematopoietic cells. Biochemical studies show that these changes occur in concert with an attenuated rise in cyclic adenosine monophosphate levels in response to prostacyclin and a substantial increase in basal Akt activation. In contrast, basal cyclic adenosine monophosphate (cAMP) levels, agonist-stimulated increases in [Ca++]i, Rap1 activation, and α-granule secretion were unaffected. Collectively, these observations (1) demonstrate an active role for RGS proteins in regulating platelet responsiveness, (2) show that this occurs in a pathway-selective manner, and (3) suggest that RGS proteins help to prevent unwarranted platelet activation as well as limiting the magnitude of the normal hemostatic response.
In vivo efficacy of platelet-delivered, high specific activity factor VIII variants
Authors: Greene Teshell K. , Wang Cheng , Hirsch Jessica D. , Zhai Li , Gewirtz Jamie , Thornton Michael A. , Miao Hongzhi Z. , Pipe Steven W. , Kaufman Randal J. , Camire Rodney M. , Arruda Valder R. , Kowalska M. Anna , Poncz Mortimer 
Published: September 2010

AbstractEctopically expressed, human B-domainless (hB) factor 8 (F8) in platelets improves hemostasis in hemophilia A mice in several injury models. However, in both a cuticular bleeding model and a cremaster laser arteriole/venule injury model, there were limitations to platelet-derived (p) hBF8 efficacy, including increased clot embolization. We now address whether variants of F8 with enhanced activity, inactivation resistant F8 (IR8) and canine (c) BF8, would improve clotting efficacy. In both transgenic and lentiviral murine model approaches, pIR8 expressed at comparable levels to phBF8, but pcBF8 expressed at only approximately 30%. Both variants were more effective than hBF8 in cuticular bleeding and FeCl3 carotid artery models. However, in the cremaster injury model, only pcBF8 was more effective, markedly decreasing clot embolization. Because inhibitors of F8 are stored in platelet granules and IR8 is not protected by binding to von Willebrand factor, we also tested whether pIR8 was effective in the face of inhibitors and found that pIR8 is protected from the inhibitors. In summary, pF8 variants with high specific activity are more effective in controlling bleeding, but this improved efficacy was inconsistent between bleeding models, perhaps reflecting the underlying mechanism(s) for the increased specific activity of the studied F8 variants.
Effect of cAMP derivates on assembly and maintenance of tight junctions in human umbilical vein endothelial cells
Authors: Beese Michaela , Wyss Kristin , Haubitz Marion , Kirsch Torsten 
Published: September 2010

Abstract

Background
Endothelial tight and adherens junctions control a variety of physiological processes like adhesion, paracellular transport of solutes or trafficking of activated leukocytes. Formation and maintenance of endothelial junctions largely depend on the microenvironment of the specific vascular bed and on interactions of the endothelium with adjacent cell types. Consequently, primary cultures of endothelial cells often lose their specific junctional pattern and fail to establish tight monolayer in vitro. This is also true for endothelial cells isolated from the vein of human umbilical cords (HUVEC) which are widely used as model for endothelial cell-related studies.

Results
We here compared the effect of cyclic 3'-5'-adenosine monophosphate (cAMP) and its derivates on formation and stabilization of tight junctions and on alterations in paracellular permeability in HUVEC. We demonstrated by light and confocal laser microscopy that for shorter time periods the sodium salt of 8-bromoadenosine-cAMP (8-Br-cAMP/Na) and for longer incubation periods 8-(4-chlorophenylthio)-cAMP (pCPT-cAMP) exerted the greatest effects of all compounds tested here on formation of continuous tight junction strands in HUVEC. We further demonstrated that although all compounds induced protein kinase A-dependent expression of the tight junction proteins claudin-5 and occludin only pCPT-cAMP slightly enhanced paracellular barrier functions. Moreover, we showed that pCPT-cAMP and 8-Br-cAMP/Na induced expression and membrane translocation of tricellulin.

Conclusions
pCPT-cAMP and, to a lesser extend, 8-Br-cAMP/Na improved formation of continuous tight junction strands and decreased paracellular permeability in primary HUVEC. We concluded that under these conditions HUVEC represent a feasible in vitro model to study formation and disassembly of endothelial tight junctions and to characterize tight junction-associated proteins
Diversity of sponge mitochondrial introns revealed by cox 1sequences of Tetillidae
Authors: Szitenberg Amir , Rot Chagai , Ilan Micha , Huchon Dorothée 
Published: September 2010

Abstract

Background
Animal mitochondrial introns are rare. In sponges and cnidarians they have been found in the cox 1 gene of some spirophorid and homosclerophorid sponges, as well as in the cox 1 and nad 5 genes of some Hexacorallia. Their sporadic distribution has raised a debate as to whether these mobile elements have been vertically or horizontally transmitted among their hosts. The first sponge found to possess a mitochondrial intron was a spirophorid sponge from the Tetillidae family. To better understand the mode of transmission of mitochondrial introns in sponges, we studied cox 1 intron distribution among representatives of this family.

Results
Seventeen tetillid cox 1 sequences were examined. Among these sequences only six were found to possess group I introns. Remarkably, three different forms of introns were found, named introns 714, 723 and 870 based on their different positions in the cox 1 alignment. These introns had distinct secondary structures and encoded LAGLIDADG ORFs belonging to three different lineages. Interestingly, sponges harboring the same intron form did not always form monophyletic groups, suggesting that their introns might have been transferred horizontally. To evaluate whether the introns were vertically or horizontally transmitted in sponges and cnidarians we used a host parasite approach. We tested for co-speciation between introns 723 (the introns with the highest number of sponge representatives) and their nesting cox 1 sequences. Reciprocal AU tests indicated that the intron and cox 1 tree are significantly different, while a likelihood ratio test was not significant. A global test of co-phylogeny had significant results; however, when cnidarian sequences were analyzed separately the results were not significant.

Conclusions
The co-speciation analyses thus suggest that a vertical transmission of introns in the ancestor of sponges and cnidarians, followed by numerous independent losses, cannot solely explain the current distribution of metazoan group I introns. An alternative scenario that includes horizontal gene transfer events appears to be more suitable to explain the incongruence between the intron 723 and the cox 1 topologies. In addition, our results suggest that three different intron forms independently colonized the cox 1 gene of tetillids. Among sponges, the Tetillidae family seems to be experiencing an unusual number of intron insertions.
Effect of a multispecies probiotic supplement on quantity of irritable bowel syndrome-related intestinal microbial phylotypes
Authors: Lyra Anna , Krogius-Kurikka Lotta , Nikkilä Janne , Malinen Erja , Kajander Kajsa , Kurikka Kyösti , Korpela Riitta , Palva Airi 
Published: September 2010

Abstract

Background
Probiotics can alleviate the symptoms of irritable bowel syndrome (IBS), possibly by stabilizing the intestinal microbiota. Our aim was to determine whether IBS-associated bacterial alterations were reduced during multispecies probiotic intervention consisting of Lactobacillus rhamnosus GG, L. rhamnosus Lc705, Propionibacterium freudenreichii ssp. shermanii JS and Bifidobacterium breve Bb99. The intervention has previously been shown to successfully alleviate gastrointestinal symptoms of IBS.

Methods
The faecal microbiotas of 42 IBS subjects participating in a placebo-controlled double-blind multispecies probiotic intervention were analysed using quantitative real-time polymerase chain reaction (qPCR). Eight bacterial targets within the gastrointestinal microbiota with a putative IBS association were measured.

Results
A phylotype with 94% similarity to Ruminococcus torques remained abundant in the placebo group, but was decreased in the probiotic group during the intervention (P = 0.02 at 6 months). In addition, the clostridial phylotype, Clostridium thermosuccinogenes 85%, was stably elevated during the intervention (P = 0.00 and P = 0.02 at 3 and 6 months, respectively). The bacterial alterations detected were in accordance with previously discovered alleviation of symptoms.

Conclusions
The probiotic supplement was thus shown to exert specific alterations in the IBS-associated microbiota towards the bacterial 16S rDNA phylotype quantities described previously for subjects free of IBS. These changes may have value as non-invasive biomarkers in probiotic intervention studies.
Is elevated SUA associated with a worse outcome in young Chinese patients with acute cerebral ischemic stroke?
Authors: Zhang Bin , Gao Cong , Yang Ning , Zhang WeiZhi , Song XingWang , Yin JianRui , Pu ShuXiang , Yi YongHong , Gao QingChun 
Published: September 2010

Abstract

Background
Elevated serum uric acid (SUA) levels can enhance its antioxidant prosperities and reduce the occurrence of cerebral infarction. Significantly elevated SUA levels have been associated with a better prognosis in patients with cerebral infarction; however, the results from some studies on the relationship between SUA and the prognosis of patients with cerebral infarction remain controversial.

Methods
We analyzed the relationship between SUA and clinical prognosis of 585 young Chinese adults with acute ischemic stroke as determined by the modified Rankin Scale at discharge. Using multivariate logistic regression modeling, we explore the relationship between SUA levels and patient's clinical prognosis.

Results
Lower SUA levels at time of admission were observed more frequently in the lowest quintile for patients with severe stroke (P = 0.02). Patients with cerebral infarction patients caused by small-vessel blockage had higher SUA concentrations (P = 0.01) and the lower mRS scores (P < 0.01) were observed in, while the lowest SUA concentrations and the highest mRS scores were seen in patients with cardiogenic cerebral infarction patients. Logistic regression analysis adjusted for confounders confirmed the following independent predictors for young cerebral infarction: uric acid (-0.003: 95%CI 0.994 to 0.999) and platelet (0.004, 95%CI 0.993 to 0.996).

Conclusion
Elevated SUA is an independent predictor for good clinical outcome of acute cerebral infarction among young adults.
Tumour stromal cells derived from paediatric malignancies display MSC-like properties and impair NK cell cytotoxicity
Authors: Johann Pascal-David , Vaegler Martin , Gieseke Friederike , Mang Philippa , Armeanu-Ebinger Sorin , Kluba Torsten , Handgretinger Rupert , Müller Ingo 
Published: September 2010

Abstract

Background
Tumour growth and metastatic infiltration are favoured by several components of the tumour microenvironment. Bone marrow-derived multipotent mesenchymal stromal cells (MSC) are known to contribute to the tumour stroma. When isolated from healthy bone marrow, MSC exert potent antiproliferative effects on immune effector cells. Due to phenotypic and morphological similarities of MSC and tumour stromal cells (TStrC), we speculated that immunotherapeutic approaches may be hampered if TStrC may still exhibit immunomodulatory properties of MSC.

Methods
In order to compare immunomodulatory properties of MSC and tumour stromal cells (TStrC), we established and analyzed TStrC cultures from eleven paediatric tumours and MSC preparations from bone marrow aspirates. Immunophenotyping, proliferation assays and NK cell cytotoxicity assays were employed to address the issue.

Results
While TStrC differed from MSC in terms of plasticity, they shared surface expression of CD105, CD73 and other markers used for MSC characterization. Furthermore, TStrC displayed a strong antiproliferative effect on peripheral blood mononuclear cells (PBMC) in coculture experiments similar to MSC. NK cell cytotoxicity was significantly impaired after co-culture with TStrC and expression of the activating NK cell receptors NKp44 and NKp46 was reduced.

Conclusions
Our data show that TStrC and MSC share important phenotypic and functional characteristics. The inhibitory effect of TStrC on PBMC and especially on NK cells may facilitate the immune evasion of paediatric tumours.