bluuebunny/crossref_metadata_2025_split huggingface dataset:
When One Person's Mistake Is Another's Standard Usage: The Effect of Foreign Accent on Syntactic Processing
Authors: Hanulíková Adriana , van Alphen Petra M. , van Goch Merel M. , Weber Andrea 
Published: August 2011

AbstractHow do native listeners process grammatical errors that are frequent in non-native speech? We investigated whether the neural correlates of syntactic processing are modulated by speaker identity. ERPs to gender agreement errors in sentences spoken by a native speaker were compared with the same errors spoken by a non-native speaker. In line with previous research, gender violations in native speech resulted in a P600 effect (larger P600 for violations in comparison with correct sentences), but when the same violations were produced by the non-native speaker with a foreign accent, no P600 effect was observed. Control sentences with semantic violations elicited comparable N400 effects for both the native and the non-native speaker, confirming no general integration problem in foreign-accented speech. The results demonstrate that the P600 is modulated by speaker identity, extending our knowledge about the role of speaker's characteristics on neural correlates of speech processing.
Role of Broca's Area in Implicit Motor Skill Learning: Evidence from Continuous Theta-burst Magnetic Stimulation
Authors: Clerget Emeline , Poncin William , Fadiga Luciano , Olivier Etienne 
Published: August 2011

AbstractComplex actions can be regarded as a concatenation of simple motor acts, arranged according to specific rules. Because the caudal part of the Broca's region (left Brodmann's area 44, BA 44) is involved in processing hierarchically organized behaviors, we aimed to test the hypothesis that this area may also play a role in learning structured motor sequences. To address this issue, we investigated the inhibitory effects of a continuous theta-burst TMS (cTBS) applied over left BA 44 in healthy subjects, just before they performed a serial RT task (SRTT). SRTT has been widely used to study motor skill learning and is also of interest because, for complex structured sequences, subjects spontaneously organize them into smaller subsequences, referred to as chunks. As a control, cTBS was applied over the vertex in another group, which underwent the same experiment. Control subjects showed both a general practice learning effect, evidenced by a progressive decrease in RT across blocks and a sequence-specific learning effect, demonstrated by a significant RT increase in a pseudorandom sequence. In contrast, when cTBS was applied over left BA 44, subjects lacked both the general practice and sequence-specific learning effects. However, surprisingly, their chunking pattern was preserved and remained indistinguishable from controls. The present study indicates that left BA 44 plays a role in motor sequence learning, but without being involved in elementary chunking. This dissociation between chunking and sequence learning could be explained if we postulate that left BA 44 intervenes in high hierarchical level processing, possibly to integrate elementary chunks together.
The Neurotopography of Written Word Production: An fMRI Investigation of the Distribution of Sensitivity to Length and Frequency
Authors: Rapp Brenda , Dufor Olivier 
Published: August 2011

Abstract
This research is directed at charting the neurotopography of the component processes of the spelling system by using fMRI to identify the neural substrates that are sensitive to the factors of lexical frequency and word length. In spelling, word frequency effects index orthographic long-term memory whereas length effects, as measured by the number of letters, index orthographic working memory (grapheme buffering). Using the task of spelling to dictation in the scanner, we found a highly differentiated neural distribution of sensitivity to the factors of length and lexical frequency, with areas exhibiting sensitivity to length but not frequency and vice versa. In addition, a direct comparison with the results of a previous study [Rapp, B., & Lipka, K. The literate brain: The relationship between spelling and reading. Journal of Cognitive Neuroscience, 23, 1180–1197, 2011] that used a very different spelling task yielded a converging pattern of findings regarding the neural substrates of the central components of spelling. Also, with regard to relationship between reading and spelling, we replicated previous functional neuroimaging studies that have shown overlapping regions of activation in the left posterior inferior frontal gyrus and midfusiform gyrus for word reading and spelling.
Visual Processing of Contour Patterns under Conditions of Inattentional Blindness
Authors: Pitts Michael A. , Martínez Antígona , Hillyard Steven A. 
Published: August 2011

Abstract
An inattentional blindness paradigm was adapted to measure ERPs elicited by visual contour patterns that were or were not consciously perceived. In the first phase of the experiment, subjects performed an attentionally demanding task while task-irrelevant line segments formed square-shaped patterns or random configurations. After the square patterns had been presented 240 times, subjects' awareness of these patterns was assessed. More than half of all subjects, when queried, failed to notice the square patterns and were thus considered inattentionally blind during this first phase. In the second phase of the experiment, the task and stimuli were the same, but following this phase, all of the subjects reported having seen the patterns. ERPs recorded over the occipital pole differed in amplitude from 220 to 260 msec for the pattern stimuli compared with the random arrays regardless of whether subjects were aware of the patterns. At subsequent latencies (300–340 msec) however, ERPs over bilateral occipital-parietal areas differed between patterns and random arrays only when subjects were aware of the patterns. Finally, in a third phase of the experiment, subjects viewed the same stimuli, but the task was altered so that the patterns became task relevant. Here, the same two difference components were evident but were followed by a series of additional components that were absent in the first two phases of the experiment. We hypothesize that the ERP difference at 220–260 msec reflects neural activity associated with automatic contour integration whereas the difference at 300–340 msec reflects visual awareness, both of which are dissociable from task-related postperceptual processing.
Relation between Peritonsillar Infection and Acute Tonsillitis
Authors: Kordeluk Sofia , Novack Lena , Puterman Moshe , Kraus Mordechai , Joshua Ben‐Zion 
Published: August 2011

ObjectiveTo investigate the relationship between tonsillar and peritonsillar infections.Study DesignRetrospective population‐based study and a retrospective case series review.SettingsTertiary academic medical facility.Subjects and MethodsAll individuals hospitalized with peritonsillar abscess (PTA) or peritonsillar cellulitis (PTC) during 2004‐2008 were reviewed. Patient age, gender, diagnosis of PTA or PTC, recurrence, and date of presentation were recorded. In addition, a database of patients diagnosed in the community with acute tonsillitis (AT) was reviewed for the same time period. The weekly number of patients with AT was recorded, and a comparison between incidence of tonsillar infections and peritonsillar infection was performed.ResultsA total of 685 patients were hospitalized with either PTA (467) or PTC (218). Incidence of both upper respiratory infections and AT peaked in January and February of every year with a nadir in August. In contrast, PTA and PTC showed a consistent rate of infection throughout the year. Likewise, assessment based on weekly intervals showed that peaks of PTA and PTC did not follow those of acute tonsillitis with a 1 to 2 weekly lag as would be expected if peritonsillar infection is a complication of AT. Rather, an association between peritonsillar infection and tonsillitis was found within the same week (P =. 04).ConclusionHigher rates of occurrence of PTA or PTC following AT outbreaks were not found. These results lend further support to the theory that peritonsillar infection is associated not only with complications of AT but may occur from infection of Weber glands or other unknown causes.
Impact of gene dosage, loss of wild-type allele, and FLT3 ligand on Flt3-ITD–induced myeloproliferation
Authors: Kharazi Shabnam , Mead Adam J. , Mansour Anna , Hultquist Anne , Böiers Charlotta , Luc Sidinh , Buza-Vidas Natalija , Ma Zhi , Ferry Helen , Atkinson Debbie , Reckzeh Kristian , Masson Kristina , Cammenga Jörg , Rönnstrand Lars , Arai Fumio , Suda Toshio , Nerlov Claus , Sitnicka Ewa , Jacobsen Sten Eirik W. 
Published: August 2011

Abstract
Acquisition of homozygous activating growth factor receptor mutations might accelerate cancer progression through a simple gene-dosage effect. Internal tandem duplications (ITDs) of FLT3 occur in approximately 25% cases of acute myeloid leukemia and induce ligand-independent constitutive signaling. Homozygous FLT3-ITDs confer an adverse prognosis and are frequently detected at relapse. Using a mouse knockin model of Flt3–internal tandem duplication (Flt3-ITD)–induced myeloproliferation, we herein demonstrate that the enhanced myeloid phenotype and expansion of granulocyte-monocyte and primitive Lin−Sca1+c-Kit+ progenitors in Flt3-ITD homozygous mice can in part be mediated through the loss of the second wild-type allele. Further, whereas autocrine FLT3 ligand production has been implicated in FLT3-ITD myeloid malignancies and resistance to FLT3 inhibitors, we demonstrate here that the mouse Flt3ITD/ITD myeloid phenotype is FLT3 ligand-independent.
Proteomic analysis of palmitoylated platelet proteins
Authors: Dowal Louisa , Yang Wei , Freeman Michael R. , Steen Hanno , Flaumenhaft Robert 
Published: August 2011

AbstractProtein palmitoylation is a dynamic process that regulates membrane targeting of proteins and protein-protein interactions. We have previously demonstrated a critical role for protein palmitoylation in platelet activation and have identified palmitoylation machinery in platelets. Using a novel proteomic approach, Palmitoyl Protein Identification and Site Characterization, we have begun to characterize the human platelet palmitoylome. Palmitoylated proteins were enriched from membranes isolated from resting platelets using acyl-biotinyl exchange chemistry, followed by identification using liquid chromatography-tandem mass spectrometry. This global analysis identified > 1300 proteins, of which 215 met criteria for significance and represent the platelet palmitoylome. This collection includes 51 known palmitoylated proteins, 61 putative palmitoylated proteins identified in other palmitoylation-specific proteomic studies, and 103 new putative palmitoylated proteins. Of these candidates, we chose to validate the palmitoylation of triggering receptors expressed on myeloid cell (TREM)–like transcript-1 (TLT-1) as its expression is restricted to platelets and megakaryocytes. We determined that TLT-1 is a palmitoylated protein using metabolic labeling with [3H]palmitate and identified the site of TLT-1 palmitoylation as cysteine 196. The discovery of new platelet palmitoyl protein candidates will provide a resource for subsequent investigations to validate the palmitoylation of these proteins and to determine the role palmitoylation plays in their function.
Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length
Authors: Lou Shao-Ke , Li Jing-Woei , Qin Hao , Yim Aldrin Kay-Yuen , Lo Leung-Yau , Ni Bing , Leung Kwong-Sak , Tsui Stephen Kwok-Wing , Chan Ting-Fung 
Published: August 2011

Abstract

Background
RNA sequencing (RNA-seq) measures gene expression levels and permits splicing analysis. Many existing aligners are capable of mapping millions of sequencing reads onto a reference genome. For reads that can be mapped to multiple positions along the reference genome (multireads), these aligners may either randomly assign them to a location, or discard them altogether. Either way could bias downstream analyses. Meanwhile, challenges remain in the alignment of reads spanning across splice junctions. Existing splicing-aware aligners that rely on the read-count method in identifying junction sites are inevitably affected by sequencing depths.

Results
The distance between aligned positions of paired-end (PE) reads or two parts of a spliced read is dependent on the experiment protocol and gene structures. We here proposed a new method that employs an empirical geometric-tail (GT) distribution of intron lengths to make a rational choice in multireads selection and splice-sites detection, according to the aligned distances from PE and sliced reads.

Conclusions
GT models that combine sequence similarity from alignment, and together with the probability of length distribution, could accurately determine the location of both multireads and spliced reads.
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine
Authors: Chancerel Emilie , Lepoittevin Camille , Le Provost Grégoire , Lin Yao-Cheng , Jaramillo-Correa Juan Pablo , Eckert Andrew J , Wegrzyn Jill L , Zelenika Diana , Boland Anne , Frigerio Jean-Marc , Chaumeil Philippe , Garnier-Géré Pauline , Boury Christophe , Grivet Delphine , González-Martínez Santiago C , Rouzé Pierre , Van de Peer Yves , Neale David B , Cervera Maria T , Kremer Antoine , Plomion Christophe 
Published: August 2011

Abstract

Background
Single nucleotide polymorphisms (SNPs) are the most abundant source of genetic variation among individuals of a species. New genotyping technologies allow examining hundreds to thousands of SNPs in a single reaction for a wide range of applications such as genetic diversity analysis, linkage mapping, fine QTL mapping, association studies, marker-assisted or genome-wide selection. In this paper, we evaluated the potential of highly-multiplexed SNP genotyping for genetic mapping in maritime pine (Pinus pinaster Ait.), the main conifer used for commercial plantation in southwestern Europe.

Results
We designed a custom GoldenGate assay for 1,536 SNPs detected through the resequencing of gene fragments (707 in vitro SNPs/Indels) and from Sanger-derived Expressed Sequenced Tags assembled into a unigene set (829 in silico SNPs/Indels). Offspring from three-generation outbred (G2) and inbred (F2) pedigrees were genotyped. The success rate of the assay was 63.6% and 74.8% for in silico and in vitro SNPs, respectively. A genotyping error rate of 0.4% was further estimated from segregating data of SNPs belonging to the same gene. Overall, 394 SNPs were available for mapping. A total of 287 SNPs were integrated with previously mapped markers in the G2 parental maps, while 179 SNPs were localized on the map generated from the analysis of the F2 progeny. Based on 98 markers segregating in both pedigrees, we were able to generate a consensus map comprising 357 SNPs from 292 different loci. Finally, the analysis of sequence homology between mapped markers and their orthologs in a Pinus taeda linkage map, made it possible to align the 12 linkage groups of both species.

Conclusions
Our results show that the GoldenGate assay can be used successfully for high-throughput SNP genotyping in maritime pine, a conifer species that has a genome seven times the size of the human genome. This SNP-array will be extended thanks to recent sequencing effort using new generation sequencing technologies and will include SNPs from comparative orthologous sequences that were identified in the present study, providing a wider collection of anchor points for comparative genomics among the conifers.
Genome-wide survey of yeast mutations leading to activation of the yeast cell integrity MAPK pathway: Novel insights into diverse MAPK outcomes
Authors: Arias Patricia , Díez-Muñiz Sonia , García Raúl , Nombela César , Rodríguez-Peña José M , Arroyo Javier 
Published: August 2011

Abstract

Background
The yeast cell wall integrity mitogen-activated protein kinase (CWI-MAPK) pathway is the main regulator of adaptation responses to cell wall stress in yeast. Here, we adopt a genomic approach to shed light on two aspects that are only partially understood, namely, the characterization of the gene functional catalog associated with CWI pathway activation and the extent to which MAPK activation correlates with transcriptional outcomes.

Results
A systematic yeast mutant deletion library was screened for constitutive transcriptional activation of the CWI-related reporter gene MLP1. Monitoring phospho-Slt2/Mpk1 levels in the identified mutants revealed sixty-four deletants with high levels of phosphorylation of this MAPK, including mainly genes related to cell wall construction and morphogenesis, signaling, and those with unknown function. Phenotypic analysis of the last group of mutants suggests their involvement in cell wall homeostasis. A good correlation between levels of Slt2 phosphorylation and the magnitude of the transcriptional response was found in most cases. However, the expression of CWI pathway-related genes was enhanced in some mutants in the absence of significant Slt2 phosphorylation, despite the fact that functional MAPK signaling through the pathway was required. CWI pathway activation was associated to increased deposition of chitin in the cell wall - a known survival compensatory mechanism - in about 30% of the mutants identified.

Conclusion
We provide new insights into yeast genes related to the CWI pathway and into how the state of activation of the Slt2 MAPK leads to different outcomes, discovering the versatility of this kind of signaling pathways. These findings potentially have broad implications for understanding the functioning of other eukaryotic MAPKs.
Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription
Authors: Mok Sachel , Imwong Mallika , Mackinnon Margaret J , Sim Joan , Ramadoss Ramya , Yi Poravuth , Mayxay Mayfong , Chotivanich Kesinee , Liong Kek-Yee , Russell Bruce , Socheat Duong , Newton Paul N , Day Nicholas PJ , White Nicholas J , Preiser Peter R , Nosten François , Dondorp Arjen M , Bozdech Zbynek 
Published: August 2011

Abstract

Background
Artemisinin resistance in Plasmodium falciparum malaria has emerged in Western Cambodia. This is a major threat to global plans to control and eliminate malaria as the artemisinins are a key component of antimalarial treatment throughout the world. To identify key features associated with the delayed parasite clearance phenotype, we employed DNA microarrays to profile the physiological gene expression pattern of the resistant isolates.

Results
In the ring and trophozoite stages, we observed reduced expression of many basic metabolic and cellular pathways which suggests a slower growth and maturation of these parasites during the first half of the asexual intraerythrocytic developmental cycle (IDC). In the schizont stage, there is an increased expression of essentially all functionalities associated with protein metabolism which indicates the prolonged and thus increased capacity of protein synthesis during the second half of the resistant parasite IDC. This modulation of the P. falciparum intraerythrocytic transcriptome may result from differential expression of regulatory proteins such as transcription factors or chromatin remodeling associated proteins. In addition, there is a unique and uniform copy number variation pattern in the Cambodian parasites which may represent an underlying genetic background that contributes to the resistance phenotype.

Conclusions
The decreased metabolic activities in the ring stages are consistent with previous suggestions of higher resilience of the early developmental stages to artemisinin. Moreover, the increased capacity of protein synthesis and protein turnover in the schizont stage may contribute to artemisinin resistance by counteracting the protein damage caused by the oxidative stress and/or protein alkylation effect of this drug. This study reports the first global transcriptional survey of artemisinin resistant parasites and provides insight to the complexities of the molecular basis of pathogens with drug resistance phenotypes in vivo.
Myosin VI contributes to synaptic transmission and development at the Drosophila neuromuscular junction
Authors: Kisiel Marta , Majumdar Debolina , Campbell Shelagh , Stewart Bryan A 
Published: August 2011

Abstract

Background
Myosin VI, encoded by jaguar (jar) in Drosophila melanogaster, is a unique member of the myosin superfamily of actin-based motor proteins. Myosin VI is the only myosin known to move towards the minus or pointed ends of actin filaments. Although Myosin VI has been implicated in numerous cellular processes as both an anchor and a transporter, little is known about the role of Myosin VI in the nervous system. We previously recovered jar in a screen for genes that modify neuromuscular junction (NMJ) development and here we report on the genetic analysis of Myosin VI in synaptic development and function using loss of function jar alleles.

Results
Our experiments on Drosophila third instar larvae revealed decreased locomotor activity, a decrease in NMJ length, a reduction in synaptic bouton number, and altered synaptic vesicle localization in jar mutants. Furthermore, our studies of synaptic transmission revealed alterations in both basal synaptic transmission and short-term plasticity at the jar mutant neuromuscular synapse.

Conclusions
Altogether these findings indicate that Myosin VI is important for proper synaptic function and morphology. Myosin VI may be functioning as an anchor to tether vesicles to the bouton periphery and, thereby, participating in the regulation of synaptic vesicle mobilization during synaptic transmission.
Grape seed proanthocyanidin extract inhibits glutamate-induced cell death through inhibition of calcium signals and nitric oxide formation in cultured rat hippocampal neurons
Authors: Ahn Seo-Hee , Kim Hee Jung , Jeong Imju , Hong Yi Jae , Kim Myung-Jun , Rhie Duck-Joo , Jo Yang-Hyeok , Hahn Sang June , Yoon Shin Hee 
Published: August 2011

Abstract

Background
Proanthocyanidin is a polyphenolic bioflavonoid with known antioxidant activity. Some flavonoids have a modulatory effect on [Ca2+]i. Although proanthocyanidin extract from blueberries reportedly affects Ca2+ buffering capacity, there are no reports on the effects of proanthocyanidin on glutamate-induced [Ca2+]i or cell death. In the present study, the effects of grape seed proanthocyanidin extract (GSPE) on glutamate-induced excitotoxicity was investigated through calcium signals and nitric oxide (NO) in cultured rat hippocampal neurons.

Results
Pretreatment with GSPE (0.3-10 μg/ml) for 5 min inhibited the [Ca2+]i increase normally induced by treatment with glutamate (100 μM) for 1 min, in a concentration-dependent manner. Pretreatment with GSPE (6 μg/ml) for 5 min significantly decreased the [Ca2+]i increase normally induced by two ionotropic glutamate receptor agonists, N-methyl-D-aspartate and alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA). GSPE further decreased AMPA-induced response in the presence of 1 μM nimodipine. However, GSPE did not affect the 50 mM K+-induced increase in [Ca2+]i. GSPE significantly decreased the metabotropic glutamate receptor agonist (RS)-3,5-Dihydroxyphenylglycine-induced increase in [Ca2+]i, but it did not affect caffeine-induced response. GSPE (0.3-6 μg/ml) significantly inhibited synaptically induced [Ca2+]i spikes by 0.1 mM [Mg2+]o. In addition, pretreatment with GSPE (6 μg/ml) for 5 min inhibited 0.1 mM [Mg2+]o- and glutamate-induced formation of NO. Treatment with GSPE (6 μg/ml) significantly inhibited 0.1 mM [Mg2+]o- and oxygen glucose deprivation-induced neuronal cell death.

Conclusions
All these data suggest that GSPE inhibits 0.1 mM [Mg2+]o- and oxygen glucose deprivation-induced neurotoxicity through inhibition of calcium signals and NO formation in cultured rat hippocampal neurons.