bluuebunny/crossref_metadata_2025_split huggingface dataset:
Augmentation of Nitric Oxide Deficient Hypertension by High Salt Diet Is Associated With Reduced TNF-α Receptor Type 1 Expression in the Kidneys
Authors: Majid Dewan S A , Prieto Minolfa C , Castillo Alexander , Chamberlain Cameron , Navar Luis Gabriel 
Published: May 2024

Abstract

BACKGROUND
High salt (HS) intake induces an augmented hypertensive response to nitric oxide (NO) inhibition, though it causes minimal changes in blood pressure (BP) in NO intact condition. The cause of such augmentation is not known. HS induces tumor necrosis factor-alpha (TNFα) production that causes natriuresis via activation of its receptor type 1 (TNFR1). We hypothesized that NO deficiency reduces renal TNFR1 activity, leading to enhanced sodium retention and hypertension.

METHODS
We examined the changes in renal TNFR1 protein expression (Immunohistochemistry analyses) after HS (4% NaCl) intake in wild-type mice (WT, C57BL6) treated with a NO synthase (NOS) inhibitor, nitro-l-arginine methyl ester (L-NAME; 0.05 mg/min/g; osmotic mini-pump), as well as in endothelial NOS knockout mice (eNOSKO) and compared the responses in WT mice with normal salt (NS; 0.3% NaCl) intake. BP was measured with tail-cuff plethysmography and 24-hour urine collections were made using metabolic cages.

RESULTS
HS alone did not alter mean BP in untreated mice (76 ± 3 to 77 ± 1 mm Hg) but induced an augmented response in L-NAME treated (106 ± 1 vs. 97 ± 2 mm Hg) and in eNOSKO (107 ± 2 vs. 89 ± 3 mm Hg) mice. The percentage area of TNFR1 expression in renal tissue was higher in WT + HS (4.1 + 0.5%) than in WT + NS mice (2.7 ± 0.6%). However, TNFR1 expression was significantly lower in L-NAME treated WT + NS (0.9 ± 0.1%) and in eNOSKO + NS (1.4 ± 0.2%) than in both WT + NS and WT + HS mice.

CONCLUSIONS
These data indicate that TNFR1 activity is downregulated in NO deficient conditions, which facilitates salt retention leading to augmented hypertension during HS intake.
Developing a design guideline of boronic acid derivatives to scavenge targeted sugars in the formose reaction products using DFT-based machine learning
Authors: Ishihara Nanako , Chikatani Genta , Nishijima Hiroaki , Tabata Hiro , Hase Yoko , Mukouyama Yoshiharu , Nakanishi Shuji , Mukaida Shiho 
Published: May 2024

Abstract
Formose reaction facilitates the synthesis of sugars from formaldehyde, yet the valuable sugars constitute only a small portion of the total products. This necessitates the need for a chemical scavenger capable of selectively capturing only valuable sugars. With over 600,000 potential combinations of boronic acid-based scavengers available, pursuing a deductive search approach is unfeasible. This study aims to derive guidelines for designing scavengers that readily bind with target sugars while avoiding nontarget ones via machine learning informed by density functional theory calculations.
Synthesis and chiroptical properties of cyclic anthraquinodimethane dimer using Au-templated method
Authors: Sugiyama Soichiro , Murotani Kazuharu , Ishiwari Fumitaka , Saeki Akinori , Kawai Hidetoshi , Suzuki Takanori , Tsuchido Yoshitaka , Ishigaki Yusuke 
Published: May 2024

Abstract
Cyclic anthraquinodimethane (AQD) dimer with a highly constrained structure was synthesized by using the Au-templated method. X-ray diffraction analysis and UV–Vis spectroscopy revealed that the AQD skeleton adopts a deeply folded structure and exhibits red-shifted absorptions in the dimer compared to those in noncyclized monomeric AQD. Due to the rigid and constrained structure, both enantiomers of the cyclic AQD dimer with planar chirality can be isolated and show strong circular dichroism signals. It is demonstrated that the Au-templated method is a valuable way to access a highly constrained cyclic structure with AQD skeletons.
Five-year outcomes of different techniques for minimally invasive mitral valve repair in Barlow’s disease
Authors: Pölzl Leo , Gollmann-Tepeköylü Can , Nägele Felix , Cetin Kardelen , Spilka Johannes , Holfeld Johannes , Oezpeker Ulvi C , Stastny Luka , Graber Michael , Hirsch Jakob , Engler Clemens , Dumfarth Julia , Ruttmann-Ulmer Elfriede , Hangler Herbert , Grimm Michael , Müller Ludwig , Höfer Daniel , Bonaros Nikolaos 
Published: May 2024

Abstract

OBJECTIVES
Barlow’s disease is a specific sub-form of mitral valve (MV) disease, characterized by diffuse excessive tissue and multi segment prolapse. The anterolateral mini-thoracotomy represents the standard access for MV regurgitation in many centres. It still remains unclear which surgical technique provides the best results. Therefore, the aim of this study was to compare operative safety and mid-term outcomes after (i) isolated annuloplasty, (ii) use of additional artificial chordae or (iii) leaflet resection in patients suffering from Barlow’s disease undergoing minimally invasive MV repair.

METHODS
A consecutive series of patients suffering from Barlow′s disease undergoing minimally invasive MV surgery between 2001 and 2020 were analysed (n = 246). Patients were grouped and analysed according to the used surgical technique. The primary outcome was a modified Mitral Valve Academic Research Consortium combined end-point of mortality, reoperation due to repair failure or reoccurrence of severe mitral regurgitation within 5 years. The secondary outcome included operative success and safety up to 30 days.

RESULTS
No significant difference was found between the 3 surgical techniques with regard to operative safety (P = 0.774). The primary outcome did not differ between groups (P = 0.244). Operative success was achieved in 93.5% and was lowest in the isolated annuloplasty group (77.1%). Conversion to MV replacement was increased in patients undergoing isolated annuloplasty (P &lt; 0.001).

CONCLUSIONS
Isolated annuloplasty, use of additional artificial chordae and leaflet resection represent feasible techniques in Barlow patients undergoing minimally invasive MV surgery with comparable 5-year results. In view of the increased conversion rate in the annuloplasty group, the pathology should not be oversimplified.
Increased hepatic glucagon sensitivity in totally pancreatectomised patients
Authors: Rix Iben , Lund Asger B , Garvey Lars F , Hansen Carsten P , Chabanova Elizaveta , Hartmann Bolette , Holst Jens J , Vilsbøll Tina , Van Hall Gerrit , Knop Filip K 
Published: May 2024

Abstract

Objective
The metabolic phenotype of totally pancreatectomised patients includes hyperaminoacidaemia and predisposition to hypoglycaemia and hepatic lipid accumulation. We aimed to investigate whether the loss of pancreatic glucagon may be responsible for these changes.

Methods
Nine middle-aged, normal-weight totally pancreatectomised patients, nine patients with type 1 diabetes (C-peptide negative), and nine matched controls underwent two separate experimental days, each involving a 150-min intravenous infusion of glucagon (4 ng/kg/min) or placebo (saline) under fasting conditions while any basal insulin treatment was continued.

Results
Glucagon infusion increased plasma glucagon to similar high physiological levels in all groups. The infusion increased hepatic glucose production and decreased plasma concentration of most amino acids in all groups, with more pronounced effects in the totally pancreatectomised patients compared with the other groups. Glucagon infusion diminished fatty acid re-esterification and tended to decrease plasma concentrations of fatty acids in the totally pancreatectomised patients but not in the type 1 diabetes patients.

Conclusion
Totally pancreatectomised patients were characterised by increased sensitivity to exogenous glucagon at the level of hepatic glucose, amino acid, and lipid metabolism, suggesting that the metabolic disturbances characterising these patients may be rooted in perturbed hepatic processes normally controlled by pancreatic glucagon.
Neurexin drives Caenorhabditis elegans avoidance behavior independently of its post-synaptic binding partner neuroligin
Authors: Muirhead Caroline S , Reddy Kirthi C , Guerra Sophia , Rieger Michael , Hart Michael P , Srinivasan Jagan , Chalasani Sreekanth H 
Published: May 2024

Abstract
Neurexins and their canonical binding partners, neuroligins, are localized to neuronal pre-, and post-synapses, respectively, but less is known about their role in driving behaviors. Here, we use the nematode C. elegans to show that neurexin, but not neuroligin, is required for avoiding specific chemorepellents. We find that adults with knockouts of the entire neurexin locus exhibit a strong avoidance deficit in response to glycerol and a weaker defect in response to copper. Notably, the C. elegans neurexin (nrx-1) locus, like its mammalian homologs, encodes multiple isoforms, α and γ. Using isoform-specific mutations, we find that the γ isoform is selectively required for glycerol avoidance. Next, we used transgenic rescue experiments to show that this isoform functions at least partially in the nervous system. We also confirm that the transgenes are expressed in the neurons and observe protein accumulation in neurites. Furthermore, we tested whether these mutants affect the behavioral responses of juveniles. We find that juveniles (4th larval stages) of mutants knocking out the entire locus or the α-isoforms, but not γ-isoform, are defective in avoiding glycerol. These results suggest that the different neurexin isoforms affect chemosensory avoidance behavior in juveniles and adults, providing a general principle of how isoforms of this conserved gene affect behavior across species.
The molecular machinery for maturation of primary mtDNA transcripts
Authors: Vučković Ana , Freyer Christoph , Wredenberg Anna , Hillen Hauke S 
Published: May 2024

Abstract
Human mitochondria harbour a circular, polyploid genome (mtDNA) encoding 11 messenger RNAs (mRNAs), two ribosomal RNAs (rRNAs) and 22 transfer RNAs (tRNAs). Mitochondrial transcription produces long, polycistronic transcripts that span almost the entire length of the genome, and hence contain all three types of RNAs. The primary transcripts then undergo a number of processing and maturation steps, which constitute key regulatory points of mitochondrial gene expression. The first step of mitochondrial RNA processing consists of the separation of primary transcripts into individual, functional RNA molecules and can occur by two distinct pathways. Both are carried out by dedicated molecular machineries that substantially differ from RNA processing enzymes found elsewhere. As a result, the underlying molecular mechanisms remain poorly understood. Over the last years, genetic, biochemical and structural studies have identified key players involved in both RNA processing pathways and provided the first insights into the underlying mechanisms. Here, we review our current understanding of RNA processing in mammalian mitochondria and provide an outlook on open questions in the field.
Prebiotics for Induction and Maintenance of Remission in Inflammatory Bowel Disease: Systematic Review and Meta-Analysis
Authors: Limketkai Berkeley N , Godoy-Brewer Gala , Shah Neha D , Maas Laura , White Jacob , Parian Alyssa M , Mullin Gerard E 
Published: May 2024

Abstract

Background
Prebiotics are nondigestible carbohydrates fermented by gut bacteria into metabolites that confer health benefits. However, evidence on their role for inflammatory bowel disease (IBD) is unclear. This study systematically evaluated the research on prebiotics for treatment of IBD.

Methods
A search was performed in PubMed, Embase, Cochrane, and Web of Science. Eligible articles included randomized controlled trials or prospective observational studies that compared a prebiotic with a placebo or lower-dose control in patients with IBD. Meta-analyses were performed using random-effects models for the outcomes of clinical remission, clinical relapse, and adverse events.

Results
Seventeen studies were included. For induction of clinical remission in ulcerative colitis (UC), the fructooligosaccharide (FOS) kestose was effective (relative risk, 2.75, 95% confidence interval, 1.05-7.20; n = 40), but oligofructose-enriched inulin (OF-IN) and lactulose were not. For maintenance of remission in UC, germinated barley foodstuff trended toward preventing clinical relapse (relative risk, 0.40; 95% confidence interval, 0.15-1.03; n = 59), but OF-IN, oat bran, and Plantago ovata did not. For Crohn’s disease, OF-IN and lactulose were no different than controls for induction of remission, and FOS was no different than controls for maintenance of remission. Flatulence and bloating were more common with OF-IN; reported adverse events were otherwise similar to controls for other prebiotics.

Conclusion
Prebiotics, particularly FOS and germinated barley foodstuff, show potential as effective and safe dietary supplements for induction and maintenance of remission in UC, respectively. The overall certainty of evidence was very low. There would be benefit in further investigation on the role of prebiotics as treatment adjuncts for IBD.
Singular Vortex Pairs Follow Magnetic Geodesics
Authors: Drivas Theodore D , Glukhovskiy Daniil , Khesin Boris 
Published: May 2024

Abstract
We consider pairs of point vortices having circulations $\Gamma _{1}$ and $\Gamma _{2}$ and confined to a two-dimensional surface $S$. In the limit of zero initial separation $\varepsilon $, we prove that they follow a magnetic geodesic in unison, if properly renormalized. Specifically, the “singular vortex pair” moves as a single-charged particle on the surface with a charge of order $1/\varepsilon ^{2}$ in an magnetic field $B$ that is everywhere normal to the surface and of strength $|B|=\Gamma _{1} +\Gamma _{2}$. In the case $\Gamma _{1}=-\Gamma _{2}$, this gives another proof of Kimura’s conjecture [11] that singular dipoles follow geodesics.
Microbial ecology of the deep terrestrial subsurface
Authors: Beaver Rachel C , Neufeld Josh D 
Published: May 2024

Abstract
The terrestrial subsurface hosts microbial communities that, collectively, are predicted to comprise as many microbial cells as global surface soils. Although initially thought to be associated with deposited organic matter, deep subsurface microbial communities are supported by chemolithoautotrophic primary production, with hydrogen serving as an important source of electrons. Despite recent progress, relatively little is known about the deep terrestrial subsurface compared to more commonly studied environments. Understanding the composition of deep terrestrial subsurface microbial communities and the factors that influence them is of importance because of human-associated activities including long-term storage of used nuclear fuel, carbon capture, and storage of hydrogen for use as an energy vector. In addition to identifying deep subsurface microorganisms, recent research focuses on identifying the roles of microorganisms in subsurface communities, as well as elucidating myriad interactions—syntrophic, episymbiotic, and viral—that occur among community members. In recent years, entirely new groups of microorganisms (i.e. candidate phyla radiation bacteria and Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanoloarchaeota, Nanoarchaeota archaea) have been discovered in deep terrestrial subsurface environments, suggesting that much remains unknown about this biosphere. This review explores the historical context for deep terrestrial subsurface microbial ecology and highlights recent discoveries that shape current ecological understanding of this poorly explored microbial habitat. Additionally, we highlight the need for multifaceted experimental approaches to observe phenomena such as cryptic cycles, complex interactions, and episymbiosis, which may not be apparent when using single approaches in isolation, but are nonetheless critical to advancing our understanding of this deep biosphere.
Evaluation of GPT-4 ability to identify and generate patient instructions for actionable incidental radiology findings
Authors: Woo Kar-mun C , Simon Gregory W , Akindutire Olumide , Aphinyanaphongs Yindalon , Austrian Jonathan S , Kim Jung G , Genes Nicholas , Goldenring Jacob A , Major Vincent J , Pariente Chloé S , Pineda Edwin G , Kang Stella K 
Published: May 2024

Abstract

Objectives
To evaluate the proficiency of a HIPAA-compliant version of GPT-4 in identifying actionable, incidental findings from unstructured radiology reports of Emergency Department patients. To assess appropriateness of artificial intelligence (AI)-generated, patient-facing summaries of these findings.

Materials and Methods
Radiology reports extracted from the electronic health record of a large academic medical center were manually reviewed to identify non-emergent, incidental findings with high likelihood of requiring follow-up, further sub-stratified as “definitely actionable” (DA) or “possibly actionable—clinical correlation” (PA-CC). Instruction prompts to GPT-4 were developed and iteratively optimized using a validation set of 50 reports. The optimized prompt was then applied to a test set of 430 unseen reports. GPT-4 performance was primarily graded on accuracy identifying either DA or PA-CC findings, then secondarily for DA findings alone. Outputs were reviewed for hallucinations. AI-generated patient-facing summaries were assessed for appropriateness via Likert scale.

Results
For the primary outcome (DA or PA-CC), GPT-4 achieved 99.3% recall, 73.6% precision, and 84.5% F-1. For the secondary outcome (DA only), GPT-4 demonstrated 95.2% recall, 77.3% precision, and 85.3% F-1. No findings were “hallucinated” outright. However, 2.8% of cases included generated text about recommendations that were inferred without specific reference. The majority of True Positive AI-generated summaries required no or minor revision.

Conclusion
GPT-4 demonstrates proficiency in detecting actionable, incidental findings after refined instruction prompting. AI-generated patient instructions were most often appropriate, but rarely included inferred recommendations. While this technology shows promise to augment diagnostics, active clinician oversight via “human-in-the-loop” workflows remains critical for clinical implementation.
LC–MS-MS method for mitragynine and 7-hydroxymitragynine in hair and its application in authentic hair samples of suspected kratom abusers
Authors: Rhee Jongsook , Shin Ilchung , Kim Jihyun , Lee Juseun , Cho Byungsuk , Kim Junghyun , Park Meejung , Kim Eunmi 
Published: May 2024

Abstract
Kratom is a natural psychoactive product known primarily in Southeast Asia, including Thailand, Malaysia, etc. It is also known as krathom, kakuam, ithang, thom (Thailand), biak-biak, ketum (Malaysia) and mambog (Philippines) and is sometimes used as an opium substitute. It is stimulant at doses of 1–5 g, analgesic at doses of 5–15 g and euphoric and sedative at doses of &gt;15 g. Mitragynine is the most abundant indole compound in kratom (Mitragyna speciosa) and is metabolized in humans to 7-hydroxymitragynine, the more active metabolite. Adverse effects include seizures, nausea, vomiting, diarrhea, tachycardia, restlessness, tremors, hallucinations and death. There are few studies on the analytical method for the detection of mitragynine and 7-hydroxymitragynine in hair. Therefore, this study proposes a liquid chromatography–tandem mass spectrometry (LC–MS-MS) method for the analysis of kratom in hair. Hair samples were first weighed to ∼10 mg and washed with methanol. Then the washed hair samples were cut into pieces and incubated in methanol with stirring and heating (16 h/38℃). Extracts were then analyzed by LC–MS-MS. This method was validated by determining the limit of detection (LOD), limit of quantification, linearity, intra- and inter-day accuracy and precision, recovery and matrix effects. The intra- and inter-day precision (CV%) and accuracy (bias%) were within ±20%, which was considered acceptable. Using this newly developed LC–MS-MS method, the simultaneous detection of mitragynine and 7-hydroxymitragynine in six authentic hair samples was achieved to provide the direct evidence of kratom use in the past. Mitragynine concentrations ranged from 16.0 to 2,067 pg/mg (mean 905.3 pg/mg), and 7-hydroxymitragynine concentrations ranged from 0.34 to 15 pg/mg (mean 7.4 pg/mg) in six authentic hair samples from kratom abusers. This may be due to the higher sensitivity of the LOD in this study, with values of 0.05 pg/mg for mitragynine and 0.2 pg/mg for 7-hydroxymitragynine in hair.
Chronic wasting disease effects on a breeding season behavior in White-tailed Deer (Odocoileus virginianus)
Authors: Huang Miranda H J , Demarais Steve , Strickland Bronson K , Houston Allan , Banda Alejandro , VerCauteren Kurt C 
Published: May 2024

Abstract
Wildlife disease outbreaks can lead to population declines, which are usually attributed to increased direct or indirect mortality. Alternatively, behavior associated with sickness can lead to social isolation, potentially decreasing fitness of affected individuals. A useful case study to examine this dynamic is chronic wasting disease (CWD), a neurological disease of cervids, known to affect behavior and movement. In this study, we monitored scraping, a White-tailed Deer (Odocoileus virginianus; WTD) breeding season behavior, in an area of high CWD prevalence to determine if this reproductive behavior is affected by CWD. At 107 scrape sites, we detected 3,063 scrape interactions and 218 unique bucks. Bucks engaged with scrapes most often, performing 73% of interactions—compared to 23% by does, and 4% by fawns. Twenty-one bucks captured on camera traps at scrape sites were harvested through recreational hunting, 13 testing CWD-positive and 8 CWD not-detected. We found no significant effect of CWD status on specific scraping behaviors. There may, however, have been population-level effects, with shifts toward greater proportions of scraping by yearling bucks and during daylight hours compared to findings from past studies.
Using the Discontinuous Bi-viscosity model to analyze the three-dimensional flow field and local scour behavior around the Claviaster libycus
Authors: Lin Pin-Jie , Wu Tso-Ren , Lin Jih-Pai , Chuang Mei-Hui , Huang Yi-Xuan , Chi Jia-Jie 
Published: May 2024

Abstract
Previous studies have suggested that irregular echinoids exhibit higher survival rates than regular echinoids following mass extinctions. This study focuses on the irregular echinoid Claviaster libycus, investigating its flow field and scour behavior under extreme water flow conditions through numerical simulations and experiments. The numerical model Splash3D used in this study was modified from the open-source code Truchas developed by the U.S. National Laboratory. Splash3D solves the three-dimensional incompressible Navier-Stokes Eqs.. The fluid volume method describes the water surface kinematics and sand surface kinematics. Since Claviaster libycus is semi-submerged in the sand, a discontinuous bi-viscosity model describes the rheological behavior of the bed material. The research findings indicate that when the gonopore of Claviaster libycus faces downstream, there is no evident horseshoe vortex flow, which contributes to reducing the occurrence of localized scour. This also validates the hypothesis of this study: the transition of echinoids from pentaradial symmetry to bilateral symmetry assists in stabilizing bottom sediments and reducing localized scour.