bluuebunny/crossref_metadata_2025_split huggingface dataset:
Black Walnut Mortality in Colorado Caused by the Walnut Twig Beetle and Thousand Cankers Disease
Authors: Tisserat Ned , Cranshaw Whitney , Leatherman David , Utley Curtis , Alexander Kathleen 
Published: August 2009

Since 2001, widespread mortality of black walnut (Juglans nigra) has been reported in Colorado, USA. Affected trees initially show a yellowing and thinning of leaves in the upper crown, followed by twig and branch dieback and ultimately tree death. We report that this mortality is the result of a combination of an expanded geographic range of the walnut twig beetle (Pityophthorus juglandis), its aggressive feeding behavior on black walnut, and extensive cankering caused by an unnamed Geosmithia fungus associated with the beetle. Geosmithia was consistently recovered from the bodies of P. juglandis and this insect introduces the fungus into healthy trees during gallery formation. This is the first report of Geosmithia as a pathogen of black walnut. We propose the name Thousand Cankers to describe this disease because mortality is the result of bark necrosis caused by an enormous number of coalescing branch and trunk cankers. A second pathogen, Fusarium solani, was isolated from the margins of elongate trunk cankers during the final stages of decline, but not from cankers surrounding beetle galleries. Thousand Cankers Disease is eliminating black walnut along the Front Range of Colorado and poses a grave risk to this species in its native range in eastern North America should the insect/Geosmithia complex be introduced. Accepted for publication 26 May 2009. Published 11 August 2009.
A reliable body condition scoring technique for estimating condition in African buffalo
Authors: Ezenwa Vanessa O. , Jolles Anna E. , O’Brien Michael P. 
Published: August 2009

AbstractEvaluating animal body condition is a necessary component of many ecological studies. Although many methods for assessing animal body condition have been developed, relatively few can be used for estimating condition on live animals. Noninvasive body condition scoring techniques have been developed for assessing condition in livestock and more recently such techniques have been applied to wild ungulates. In this study, we examined the reliability of a body condition scoring technique for assessing condition in African buffalo (Syncerus caffer caffer). We compared a body condition score (BCS) based on visual assessment and manual palpation of an animal’s body to two standard metrics of condition widely used in mammals: kidney fat index (KFI) and haematocrit (HCT). Across all buffalo, BCS was significantly and positively correlated with both KFI and HCT. For HCT, this pattern was observed among adults, juveniles, males and females; and in the wet season but not in the dry season. For KFI, BCS was significantly and positively correlated with KFI among adults, juveniles and males, but not in females. Overall, our results suggest that the BCS technique can serve as a useful method for estimating body condition in buffalo.
Clinical trial: efficacy and safety of dexlansoprazole MR 60 and 90 mg in healed erosive oesophagitis – maintenance of healing and symptom relief
Authors: HOWDEN C. W. , LARSEN L. M. , PEREZ M. C. , PALMER R. , ATKINSON S. N. 
Published: August 2009

SummaryBackground  Dexlansoprazole MR, a modified‐release formulation of dexlansoprazole, an enantiomer of lansoprazole, effectively heals erosive oesophagitis.Aim  To assess dexlansoprazole MR in maintaining healed erosive oesophagitis.Methods  Patients (n = 451) with erosive oesophagitis healed in either of two dexlansoprazole MR healing trials randomly received dexlansoprazole MR 60 or 90 mg or placebo once daily in this double‐blind trial. The percentage of patients who maintained healing at month 6 was analysed using life table and crude rate methods. Secondary endpoints were percentages of nights and of 24‐h days without heartburn based on daily diaries.Results  Dexlansoprazole MR 60 and 90 mg were superior to placebo for maintaining healing (P < 0.0025). Maintenance rates were 87% and 82% for the 60 and 90 mg doses, respectively, vs. 26% for placebo (life table), and 66% and 65% vs. 14%, respectively (crude rate). Both doses were superior to placebo for the percentage of 24‐h heartburn‐free days (60 mg, 96%; 90 mg, 94%; placebo, 19%) and nights (98%, 97%, and 50%, respectively). Diarrhoea, flatulence, gastritis (symptoms) and abdominal pain occurred more frequently with dexlansoprazole MR than placebo, but were not dose‐related.Conclusion  Dexlansoprazole MR effectively maintained healed erosive oesophagitis and symptom relief compared with placebo, and was well tolerated.
Relevance and limitations of biogenic and physicogenic classification: a comparison of approaches for differentiating the origin of soil aggregates
Authors: Jouquet P. , Zangerle A. , Rumpel C. , Brunet D. , Bottinelli N. , Tran Duc T. 
Published: August 2009

SummaryAlthough freshly formed or unaltered biogenic aggregates are easily recognized, identifying the origin of aggregates altered by physical and biological processes remains empirical and prone to error. The aim of this study was to distinguish between biogenic (BIO) and physicogenic (PHYS) aggregates in various states of fragmentation or size classes using visual, physical and chemical characteristics. Casts produced byAmynthas khami(BIO) and surrounding soil aggregates without visible biological activity (PHYS) were left to disaggregate by natural rainfall events and then separated into five size classes of >10, 10–5, 5–2, 2–0.5 and <0.5 mm. We then analysed aggregate morphology, elemental and stable isotope composition and soil stability, and used near‐infrared spectroscopy (NIRS) to determine their chemical characteristics. Although visual assessment is the method most commonly used in the field to distinguish between BIO and PHYS, our study found that the results obtained were always prone to error and that the classification was arbitrary for BIO and PHYS aggregates smaller than 5 and 2 mm in size, respectively. Soil structural stability was only useful for identifying BIO aggregates larger than 2 mm. While C content and δ13C in BIO were always different from PHYS, regardless of soil aggregate size, N content and δ15N were similar. NIRS was the most effective method because it clearly discriminated soil aggregates on the basis of size and origin. The NIRS characteristics of BIO were also more uniform than those of PHYS, suggesting that BIO aggregates have a simpler organization and as a consequence more homogeneous ecological functions. Thus, our findings suggest that information may be lost when only the physical aspect of aggregates is used to quantify the activity of ecosystem engineers in soil. After fragmentation, BIO aggregates become hidden and although it may be impossible to distinguish them visually from PHYS aggregates they retain some of their specific chemical characteristics.
Environmental control of the recruitment of sardines (Sardina pilchardus) over the western Saharan shelf between 1995 and 2002: a coupled physical/biogeochemical modelling experiment
Authors: MACHU E. , ETTAHIRI O. , KIFANI S. , BENAZZOUZ A. , MAKAOUI A. , DEMARCQ H. 
Published: August 2009

AbstractFisheries constitute an important economic sector for Morocco, where the species Sardina pilchardus represents the main landings. In acoustic evaluations conducted along the Moroccan coast since 1995, the absence of juveniles in 1996 and 1998 and the collapse of the sardine stock between 1996 and 1997 represent the main events until 2002. Sardines are known to be microphageous planktivores and thus are sensitive to environmental variability. A biogeochemical model coupled to a hydrodynamic model (ROMS) was run over the Canary Current System (1991–2002) to investigate the environmental factors that could have played a role in the variability of the sardine spawning. A grid refinement (1/12°) centred on the Saharan Bank (SB) region was built to study the main spawning ground of sardines off northwest Africa. The volume of the potential spawning habitat (PSH) of sardines was defined as a function of depth, temperature and salinity, which are included in the ranges 0–200 m, 15–21°C and 35.8–36.8, respectively. Our modelling frame was able to reproduce the seasonal cycle of temperature, phytoplankton concentration and PSH over the SB. It also captured the warming associated with the negative index of the North Atlantic Oscillation of 1995–1997 and allowed a description of the inter‐annual variability of the PSH. Our experiment shows that the volume of PSH was much reduced in 1996 compared to the other years. The results suggest that the delay between high abundance of plankton and favourable spawning conditions is a good proxy for determining the recruitment failure of sardine in this oceanic region.
Transport of subarctic large copepods from the Oyashio area to the mixed water region by the coastal Oyashio intrusion
Authors: SHIMIZU YUGO , TAKAHASHI KAZUTAKA , ITO SHIN‐ICHI , KAKEHI SHIGEHO , TATEBE HIROAKI , YASUDA ICHIRO , KUSAKA AKIRA , NAKAYAMA TOMOHARU 
Published: August 2009

AbstractThe lateral transport of organic carbon in large grazing copepods (Neocalanus cristatus, Neocalanus flemingeri, Neocalanus plumchrus and Eucalanus bungii) from the Oyashio area to the mixed water region (MWR) by the coastal Oyashio intrusion was estimated using the data of VMPS (vertical multiple plankton sampler) and 1500 dbar‐referred geostrophic transport from the CTD (conductivity temperature depth sensor) data of five cruises during June 2001 to April 2002 on a repeat observation section OICE (Oyashio Intensive observation line off Cape Erimo), which extends southeastward from Hokkaido Island, Japan. The transport to MWR by the coastal Oyashio intrusion was estimated to be 5.3 × 1011 g C for the four species. Data from profiling floats also indicated that the copepods were advected from OICE to MWR by the coastal Oyashio intrusion within about 2 months. This transport is considered to be one of the significant sources of organic carbon in MWR as it is larger than the amount of large zooplankton consumed by Pacific saury (Cololabis saira) in MWR, one of the dominant copepod predators in this region.
Patchiness structure and mortality of Pacific sauryCololabis sairalarvae in the northwestern Pacific
Authors: OOZEKI YOSHIOKI , TAKASUKA AKINORI , OKAMURA HIROSHI , KUBOTA HIROSHI , KIMURA RYO 
Published: August 2009

AbstractPatchiness structure and mortality rates of Pacific sauryCololabis sairalarvae were estimated in the frontal area of the Kuroshio Extension in spring 2000 and 2001. Drogued GPS buoys, which were used as Lagrangian reference points, were deployed to mark dense patches of saury larvae and a series of samplings was conducted using a neuston net around the buoys during the night over a period of several days. A total of 225 tows were conducted and 11 690 specimens were sampled during four buoy tracking. Despite the occurrence of water diffusion, patchiness density, distance between adjacent patches and patch size estimated by geostatistical analysis did not drastically change during the buoy tracking and these parameters were robust for the difference of variogram models and the threshold larval density defining patchiness. Such a stability of the patchiness allowed the estimation of larval mortality from the decrease of larval density for different size classes with respect to individual growth based on the samples taken repeatedly during the buoy tracking. Although low or negative values were obtained for the larvae right after hatching, probably due to continuous hatching, the estimates of mortality then increased and became stable in the range of 23–37% day−1with a small standard deviation until their knob length reached to 36 mm.In situinformation on the patchiness structure and larval mortality provides crucial parameters for simulating the recruitment process of small pelagic fishes in high‐resolution hydrodynamic models.
Ecosystem effects of environmental flows: modelling and experimental floods in a dryland river
Authors: SHAFROTH PATRICK B. , WILCOX ANDREW C. , LYTLE DAVID A. , HICKEY JOHN T. , ANDERSEN DOUGLAS C. , BEAUCHAMP VANESSA B. , HAUTZINGER ANDREW , McMULLEN LAURA E. , WARNER ANDREW 
Published: August 2009

Summary1. Successful environmental flow prescriptions require an accurate understanding of the linkages among flow events, geomorphic processes and biotic responses. We describe models and results from experimental flow releases associated with an environmental flow program on the Bill Williams River (BWR), Arizona, in arid to semiarid western U.S.A.2. Two general approaches for improving knowledge and predictions of ecological responses to environmental flows are: (1) coupling physical system models to ecological responses and (2) clarifying empirical relationships between flow and ecological responses through implementation and monitoring of experimental flow releases.3. We modelled the BWR physical system using: (1) a reservoir operations model to simulate reservoir releases and reservoir water levels and estimate flow through the river system under a range of scenarios, (2) one‐ and two‐dimensional river hydraulics models to estimate stage–discharge relationships at the whole‐river and local scales, respectively, and (3) a groundwater model to estimate surface‐ and groundwater interactions in a large, alluvial valley on the BWR where surface flow is frequently absent.4. An example of a coupled, hydrology‐ecology model is the Ecosystems Function Model, which we used to link a one‐dimensional hydraulic model with riparian tree seedling establishment requirements to produce spatially explicit predictions of seedling recruitment locations in a Geographic Information System. We also quantified the effects of small experimental floods on the differential mortality of native and exotic riparian trees, on beaver dam integrity and distribution, and on the dynamics of differentially flow‐adapted benthic macroinvertebrate groups.5. Results of model applications and experimental flow releases are contributing to adaptive flow management on the BWR and to the development of regional environmental flow standards. General themes that emerged from our work include the importance of response thresholds, which are commonly driven by geomorphic thresholds or mediated by geomorphic processes, and the importance of spatial and temporal variation in the effects of flows on ecosystems, which can result from factors such as longitudinal complexity and ecohydrological feedbacks.
The assessment of shear stress and bed stability in stream ecology
Authors: SCHWENDEL ARVED C. , DEATH RUSSELL G. , FULLER IAN C. 
Published: August 2009

Summary1. Substratum stability and shear stress exerted by flowing water can have a strong influence on the structure of benthic communities. Bed stability can be characterised in a variety of ways, e.g. flow competence, threshold of particle entrainment, measures of erosion and deposition, particle transport distance, abrasion and bedload transport rate. This paper reviews methods for the quantification of bed stability and shear stress in streams and rivers that are relevant for the examination of the relationships between stream biota and bed stability.2. The most suitable method for a research project depends mainly on the objectives. The targeted group of biota, spatial and temporal scale of investigation, as well as hydraulic conditions and substratum characteristics at the study site(s) determine the choice of a technique for the assessment of bed stability.3. Indirect measurement of shear stress can be more accurate than calculations based on the DuBoys equation. However, the latter is preferred for reach‐wide applications within the limits imposed by hydraulic conditions. The entrainment of the substratum is most effectively assessed using a combination of shear stress and competence equations, but the latter require careful parameterisation. At the patch‐scale, direct measurement of entrainment force is a valid alternative.4. Morphometric budgeting is the most comprehensive and least invasive technique for the assessment of rates of erosion and deposition. The transport of substratum particles is efficiently monitored with in situ marked or active tracer particles which allow for rapid and non‐invasive identification and high recovery rate. As the assessment of bedload transport rate by formulae can be inaccurate, direct measurement is preferred. However, bedload traps interfere with the substratum and continuity of measurement with samplers is limited. Thus developments in the sector of acoustic and piezoelectric devices offer a potential alternative.5. The abrasive forces by suspended sediments on stream biota are effectively evaluated with artificial blocks that are fixed on the stream bed. Descriptive surveys that assess bed stability offer an alternative to direct measurement and calculations. They are straightforward and non‐invasive but can be observer‐biased. If single methods do not provide useful links with biological data this may be improved by the application of a multivariate approach.6. Many of the methods assessed have not yet been applied in research on benthic communities, but these hydraulic and geomorphologic techniques offer considerable potential for the assessment of bed stability in stream ecology.
Prevalence of flea infestation in dogs and cats in Hungary combined with a survey of owner awareness
Authors: FARKAS R. , GYURKOVSZKY M. , SOLYMOSI N. , BEUGNET F. 
Published: August 2009

Abstract.A survey was conducted in order to gain current information on flea species (Siphonaptera: Pulicidae) infesting dogs and cats living in urban and rural areas of Hungary, along with data on the factors that affect the presence, distribution and seasonality of infestation. In addition, owner awareness of flea infestation was evaluated. Practitioners in 13 veterinary clinics were asked to examine all dogs and cats attending the clinic and to collect fleas, when present, on 2 days in each month from December 2005 to November 2006. They also completed a questionnaire for each animal examined. A total of 319 dogs (14.1%) were found to be infested; the highest prevalence (27.1%) of infestation on dogs occurred in August and the lowest (5.4%) in May. Prevalence of fleas on cats was higher (22.9%); the highest (35.0%) and lowest (8.1%) prevalences occurred in July and April, respectively. Fleas were more prevalent in rural (387/1924 animals, 20.2%) than in urban (161/1343 animals, 12.0%) areas. Three species, Ctenocephalides felis (Bouché), Ctenocephalides canis (Curtis) and Pulex irritans L., were found. On dogs, the prevalence of C. canis alone was 53.0%, whereas that of C. felis alone was 36.0%. Only 19 specimens of P. irritans were found on 14 dogs from rural habitats only. Prevalence of C. felis only on cats was 94.3%; the remaining cats were infested with either C. canis or with mixed infestations of C. felis and C. canis. More than half (51.4%) of the owners of infested dogs and cats had not used flea control products in the past year or more, and five times as many owners in rural than urban areas had not used flea control products in the same period. Very few owners reported having attempted to kill fleas in their animals' environment; instead, they believed that fleas were acquired from other cats or dogs.
Efficacy and safety of catnip (Nepeta cataria) as a novel filth fly repellent*
Authors: ZHU J. J. , ZENG X.‐P. , BERKEBILE D. , DU H.‐J. , TONG Y. , QIAN K. 
Published: August 2009

Abstract.Catnip (Nepeta cataria) is known for its pseudo‐narcotic effects on cats. Recently, it has been reported as an effective mosquito repellent against severalAedesandCulexspecies, both topically and spatially. Our laboratory bioassays showed that catnip essential oil (at a dosage of 20 mg) resulted in average repellency rates of 96% against stable flies,Stomoxys calcitrans(L.) and 79% against houseflies,Musca domestica(L.), respectively. This finding suggested that the application of repellent could be used as part of filth fly management. Further evaluations of catnip oil toxicity were conducted to provide a broad‐spectrum safety profile of catnip oil use as a potential biting and nuisance insect repellent in urban settings. Acute oral, dermal, inhalation, primary dermal and eye irritation toxicity tests were performed. The acute oral LD50of catnip oil was found to be 3160 mg/kg body weight (BW) and 2710 mg/kg BW in female and male rats, respectively. The acute dermal LD50was > 5000 mg/kg BW. The acute inhalation LD50was observed to be > 10 000 mg/m3. Primary skin irritation tested on New Zealand white rabbits showed that catnip oil is a moderate irritant. Catnip oil was classified as practically non‐irritating to the eye. In comparison with other U.S. Environmental Protection Agency‐approved mosquito repellents (DEET, picaridin andp‐menthane‐3,8‐diol), catnip oil can be considered as a relatively safe repellent, which may cause minor skin irritation.
Risk indicators for the tick Ixodes ricinus and Borrelia burgdorferi sensu lato in Sweden
Authors: JAENSON T. G. T. , EISEN L. , COMSTEDT P. , MEJLON H. A. , LINDGREN E. , BERGSTRÖM S. , OLSEN B. 
Published: August 2009

Abstract .The distributional area of the tick Ixodes ricinus (L.), the primary European vector to humans of Lyme borreliosis spirochaetes (Borrelia burgdorferi sensu lato) and tick‐borne encephalitis virus, appears to be increasing in Sweden. It is therefore important to determine which environmental factors are most useful to assess risk of human exposure to this tick and its associated pathogens. The geographical distribution of I. ricinus in Sweden was analysed with respect to vegetation zones and climate. The northern limit of I. ricinus and B. burgdorferi s.l. in Sweden corresponds roughly to the northern limit of the southern boreal vegetation zone, and is characterized climatically by snow cover for a mean duration of 150 days and a vegetation period averaging 170 days. The zoogeographical distribution of I. ricinus in Sweden can be classified as southerly–central, with the centre of the distribution south of the Limes Norrlandicus. Ixodes ricinus nymphs from 13 localities in different parts of Sweden were examined for the presence of B. burgdorferi s.l. and found to be infected with Borrelia afzelii and Borrelia garinii. Tick sampling localities were characterized on the basis of the density of Borrelia‐infected I. ricinus nymphs, presence of specific mammals, dominant vegetation and climate. Densities of I. ricinus nymphs and Borrelia‐infected nymphs were significantly correlated, and nymphal density can thus serve as a general indicator of risk for exposure to Lyme borreliosis spirochaetes. Analysis of data from this and other studies suggests that high densities of Borrelia‐infected nymphs typically occur in coastal, broadleaf vegetation and in mixed deciduous/spruce vegetation in southern Sweden. Ixodes ricinus populations consistently infected with B. burgdorferi s.l. can occur in: (a) biotopes with shrews, rodents, hares and birds; (b) biotopes with shrews, rodents, hares, deer and birds, and (c) island locations where the varying hare (Lepus timidus) is the only mammalian tick host.