bluuebunny/crossref_metadata_2025_split huggingface dataset:
MRGPRX2-mediated mast cell activation by substance P from overloaded human tenocytes induces inflammatory and degenerative responses in tendons
Authors: Mousavizadeh Rouhollah , Waugh Charlie M. , McCormack Robert G. , Cairns Brian E. , Scott Alex 
Published: June 2024

AbstractMast cells are immune cells minimally present in normal tendon tissue. The increased abundance of mast cells in tendinopathy biopsies and at the sites of tendon injury suggests an unexplored role of this cell population in overuse tendon injuries. Mast cells are particularly present in tendon biopsies from patients with more chronic symptom duration and a history of intensive mechanical loading. This study, therefore, examined the cross talk between mast cells and human tendon cells in either static or mechanically active conditions in order to explore the potential mechanistic roles of mast cells in overuse tendon injuries. A coculture of isolated human tenocytes and mast cells (HMC-1) combined with Flexcell Tension System for cyclic stretching of tenocytes was used. Additionally, human tenocytes were exposed to agonists and antagonists of substance P (SP) receptors. Mast cell degranulation was assessed by measuring β-hexosaminidase activity. Transwell and cell adhesion assays were used to evaluate mast cell migration and binding to tendon extracellular matrix components (collagen and fibronectin), respectively. Gene expressions were analyzed using real time qRT-PCR. Our results indicate that mechanical stimulation of human tenocytes leads to release of SP which, in turn, activates mast cells through the Mas-related G-protein-coupled receptor X2 (MRGPRX2). The degranulation and migration of mast cells in response to MRGPRX2 activation subsequently cause human tenocytes to increase their expression of inflammatory factors, matrix proteins and matrix metalloproteinase enzymes. These observations may be important in understanding the mechanisms by which tendons become tendinopathic in response to repetitive mechanical stimulation.
Fabrication of binary metal–organic frameworks of Ni–Mn@ZIFs(Cox·Zn1−xO) decorated on CF/CuO nanowire for high-performance electrochemical pseudocapacitors
Authors: Momeni Abkharaki Ali , Ensafi Ali A. 
Published: June 2024

AbstractHerein, metal–organic frameworks (MOFs) derived nanoflower-like based binary transition metal (Ni–Mn) are successfully fabricated by a simple synthesis method. The fabricated nanoflower-like structure displays a unique nanoflower-like architecture and internal porous channels constructed by MOF coated on CuO/CF/ZIFs (Cox·Zn1−xO) substrate, which is beneficial for the penetration of electrolyte and electron/ion transportation. The as-prepared CF/CuO/ZIFs (Cox·Zn1−xO)@BMOF(Ni–Mn) electrode materials present significant synergy among transition metal ions, contributing to enhanced electrochemical performances. The as-prepared CF/CuO/ZIFs (Cox·Zn1−xO)@BMOF(Ni–Mn) hybrid nanoflower-like display a high specific capacity of 1249.99 C g−1 at 1 A g−1 and the specific capacitance retention is about 91.74% after 5000 cycles. In addition, the as-assembled CF/CuO/ZIFs (Cox·Zn1−xO)@BMOF(Ni–Mn)//AC asymmetric supercapacitor (ASC) device exhibited a maximum energy density of 21.77 Wh·kg−1 at a power density of 799 W kg−1, and the capacity retention rate after 5000 charge and discharge cycles was 88.52%.
Optimal immobilization position for conservative treatment of proximal humerus fractures by fracture type: a biomechanical cadaveric study
Authors: Jin Seokhwan , Lim Joon-Ryul , Yoon Tae-Hwan , Choi Yun-Rak , Chun Yong-Min 
Published: June 2024

AbstractIn conservative treatment for proximal humerus fractures (PHFs), the immobilization position of the affected arm should not be determined uniformly. The aim of this study is to investigate the optimal immobilization position for conservative treatment of different types of PHFs. We hypothesized that the optimal position minimizing the deforming force in PHFs depends on the fracture components involved. PHF models involving either the surgical neck (SN) or greater tuberosity (GT) were created using 12 fresh-frozen cadaveric shoulders. In the SN model, the deforming forces on the pectoralis major muscle were measured in full adduction by increasing external rotation. In the GT model, the deforming force of the supraspinatus muscle was measured in neutral rotation by decreasing abduction, and the deforming force of the infraspinatus muscle was measured in full adduction by increasing internal rotation, respectively. In the SN model, the deforming force of the pectoralis major muscle increased significantly with external rotation from full internal rotation to neutral rotation (P = 0.006), indicating that the arm should be placed in full internal rotation. In the GT model, the deforming force of the supraspinatus muscle increased significantly with adduction from 45° of abduction to full adduction (P = 0.006); the deforming force of the infraspinatus muscle increased significantly with internal rotation from neutral rotation to full internal rotation (P = 0.006). These findings should be considered when placing the arm in abduction and neutral rotation so as to minimize the deforming force by either the supra or infraspinatus muscle. In conservative treatment for PHFs, the affected arm should be placed in a position that minimizes the deforming force on the fracture components involved.
Understanding the relationship between pore size, surface charge density, and Cu2+ adsorption in mesoporous silica
Authors: Niu Yanhui , Yu Wenbin , Yang Shuguang , Wan Quan 
Published: June 2024

AbstractThis research delved into the influence of mesoporous silica’s surface charge density on the adsorption of Cu2+. The synthesis of mesoporous silica employed the hydrothermal method, with pore size controlled by varying the length of trimethylammonium bromide (CnTAB, n = 12, 14, 16) chains. Gas adsorption techniques and transmission electron microscopy characterized the mesoporous silica structure. Surface charge densities of the mesoporous silica were determined through potentiometric titration, while surface hydroxyl densities were assessed using the thermogravimetric method. Subsequently, batch adsorption experiments were conducted to study the adsorption of Cu2+ in mesoporous silica, and the process was comprehensively analyzed using Atomic absorption spectrometry (AAS), Fourier transform infrared (FTIR), and L3 edge X-ray absorption near edge structure (XANES). The research findings suggest a positive correlation between the pore size of mesoporous silica, its surface charge density, and the adsorption capacity for Cu2+. More specifically, as the pore size increases within the 3–4.1 nm range, the surface charge density and the adsorption capacity for Cu2+ also increase. Our findings provide valuable insights into the relationship between the physicochemical properties of mesoporous silica and the adsorption behavior of Cu2+, offering potential applications in areas such as environmental remediation and catalysis.
Connectivity modelling identifies sources and sinks of coral recruitment within reef clusters
Authors: Ani Chinenye J. , Haller-Bull Vanessa , Gilmour James P. , Robson Barbara J. 
Published: June 2024

AbstractConnectivity aids the recovery of populations following disturbances, such as coral bleaching and tropical cyclones. Coral larval connectivity is a function of physical connectivity and larval behaviour. In this study, we used OceanParcels, a particle tracking simulator, with 2D and 3D velocity outputs from a high resolution hydrodynamic-biogeochemical marine model (RECOM) to simulate the dispersal and settlement of larvae from broadcast spawning Acropora corals in the Moore Reef cluster, northern Great Barrier Reef, following the annual spawning events in 2015, 2016 and 2017. 3D velocity simulations showed 19.40–68.80% more links and sinks than those of 2D simulations. Although the patterns of connectivity among sites vary over days and years, coral larvae consistently dispersed from east to west in the cluster domain, with some sites consistently acting as sources or sinks for local larval recruitment. Results can inform coral reef intervention plans for climate change, such as the design of marine protected areas and the deployment of proposed interventions within reef clusters. For example, the wider benefits of interventions (e.g., deployment of heat adapted corals) may be optimised when deployed at locations that are a source of larvae to others within comparable habitats across the reef cluster.
Using QUASR-PCR as a field-based genotyping assay for a tick acaricide resistance marker
Authors: Meiring Christina , Labuschagne Michel 
Published: June 2024

AbstractA novel, turnkey, field-based workflow was developed and validated using Rhipicephalus microplus DNA as a template to detect the presence of the voltage-gated sodium channel kdr mutation. The field-based compatible workflow comprises manual sample homogenization for DNA extraction, PCR amplification of the targets in a closed tube, and end-point detection of the PCR products. An R. microplus species-specific assay was also included to confirm species identity and ensure the validity of the kdr mutation assay. The assays were sensitive and specific to the targets, and the workflow resulted in a turnaround time of approximately 1 h at a low cost. The novel combination of PCR with closed-tube and end-point fluorescent detection allows for easy conversion of existing conventional lab-based PCR assays into field-based detection assays. The incorporation of custom-designed 3D-printed components in the workflow provides easy adaptability and modification of the components for diverse nucleic acid detection workflows.
Dynamic modulation of the processing of unpredicted technical errors by the posterior cingulate and the default mode network
Authors: Wang Zhiyan , Becker Markus , Kondla Gregor , Gimpel Henner , Beer Anton L. , Greenlee Mark W. 
Published: June 2024

AbstractThe pervasive use of information technologies (IT) has tremendously benefited our daily lives. However, unpredicted technical breakdowns and errors can lead to the experience of stress, which has been termed technostress. It remains poorly understood how people dynamically respond to unpredicted system runtime errors occurring while interacting with the IT systems on a behavioral and neuronal level. To elucidate the mechanisms underlying such processes, we conducted a functional magnetic resonance imaging (fMRI) study in which 15 young adults solved arithmetic problems of three difficulty levels (easy, medium and hard) while two types of system runtime errors (problem errors and feedback errors) occurred in an unexpected manner. The problem error condition consisted of apparently defective displays of the arithmetic problem and the feedback error condition involved erroneous feedback. We found that the problem errors positively influenced participants’ problem-solving performance at the high difficulty level (i.e., hard tasks) at the initial stage of the session, while feedback errors disturbed their performance. These dynamic behavioral changes are mainly associated with brain activation changes in the posterior cingulate and the default mode network, including the posterior cingulate cortex, the mPFC, the retrosplenial cortex and the parahippocampal gyrus. Our study illustrates the regulatory role of the posterior cingulate in coping with unpredicted errors as well as with dynamic changes in the environment.
Citrate and low-dose heparin combined anticoagulation in pediatric continuous renal replacement therapy
Authors: Zhu Desheng , He Jie , Xiao Zhenghui , Zhou Xiong , Zhang Xinping 
Published: June 2024

AbstractThere remains no optimal anticoagulation protocol for continuous renal replacement therapy (CRRT) with regional citrate anticoagulation (RCA) in pediatric patients with elevated D-dimer levels. We aimed to assess the effects of different anticoagulation strategies on the risk of CRRT filter clotting in these patients. Pediatric patients undergoing CRRT were retrospectively grouped based on pre-CRRT D-dimer levels and anticoagulant: D-RCA group (normal D-dimer, RCA only, n = 22), D+ RCA group (elevated D-dimer, RCA only, n = 50), and D+ RCA+ systemic heparin anticoagulation (SHA) group (elevated D-dimer, RCA combined with SHA, n = 55). The risk of filter clotting and incidence of bleeding were compared among the groups. Among the groups, the D+ RCA+ SHA group had the longest filter lifespan; further, the incidence of bleeding was not increased by concurrent use of low-dose heparin for anticoagulation. Moreover, concurrent heparin anticoagulation was associated with a decreased risk of filter clotting. Contrastingly, high pre-CRRT hemoglobin and D-dimer levels and post-filter ionized calcium level > 0.4 mmol/L were associated with an increased risk of filter clotting. RCA combined with low-dose heparin anticoagulation could reduce the risk of filter clotting and prolong filter lifespan without increasing the risk of bleeding in patients with elevated D-dimer levels undergoing CRRT.
Antifeedant, antifungal and nematicidal compounds from the endophyte Stemphylium solani isolated from wormwood
Authors: Diaz Carmen E. , Andres Maria Fe , Lacret Rodney , Cabrera Raimundo , Gimenez Cristina , Kaushik Nutan , Gonzalez-Coloma Azucena 
Published: June 2024

AbstractThe continuous search for natural product-based biopesticides from fungi isolated from untapped sources is an effective tool. In this study, we studied a pre-selected fungal endophyte, isolate Aa22, from the medicinal plant Artemisia absinthium, along with the antifungal, insect antifeedant and nematicidal compounds present in the extract. The endophyte Aa22 was identified as Stemphylium solani by molecular analysis. The antifungal activity was tested by broth microdilution against Fusarium solani, F. oxysporum, F. moniliforme and Botrytis cinerea, the insect antifeedant by choice bioassays against Spodoptera littoralis, Myzus persicae and Rhopalosiphum padi and the in vitro mortality against the root-knot nematode Meloiydogyne javanica. The structures of bioactive compounds were determined on the basis of 1D and 2D NMR spectroscopy and mass spectrometry. The ethyl acetate extract obtained from the solid rice fermentation showed mycelial growth inhibition of fungal pathogens (EC50 0.08–0.31 mg/mL), was antifeedant to M. persicae (99%) and nematicidal (68% mortality). A bioguided fractionation led to the isolation of the new compound stempholone A (1), and the known stempholone B (2) and stemphol (3). These compounds exhibited antifeedant (EC50 0.50 mg/mL), antifungal (EC50 0.02–0.43 mg/L) and nematicidal (MLD 0.5 mg/mL) activities. The extract activities can be explained by 3 (antifungal), 1–3 (antifeedant) and 1 (nematicidal). Phytotoxicity tests on Lolium perenne and Lactuca sativa showed that the extract and 1 increased L. sativa root growth (121–130%) and 1 reduced L. perenne growth (48–49%). These results highlight the potential of the endophytic fungi Aa22 as biotechnological source of natural product-based biopesticides.
Reduced expression of cathepsin F predicts poor prognosis in patients with clear cell renal cell carcinoma
Authors: Zhou Xin , Chen Huayan , Huang Dong , Guan Guixian , Ma Xiaoli , Cai Weiming , Liao Jing , Guan Tangming 
Published: June 2024

AbstractAbnormalities in the extracellular matrix (ECM) play important roles in the regulation and progression of clear cell renal cell carcinoma (ccRCC). The cysteine cathepsin is one of the major proteases involved in ECM remodeling and has been shown to be aberrantly expressed in multiple cancer types. However, the clinical significance and biological function of distinct cysteine cathepsins in ccRCC remain poorly understood. In this study, several bioinformatics databases, including UALCAN, TIMER, GEPIA and the Human Protein Atlas datasets, were used to analyze the expression and prognostic value of different cysteine cathepsin family members in ccRCC. We found that the expression level of CTSF was downregulated in tumor tissues and closely related to the poor survival of ccRCC patients. Further in vitro experiments suggested that CTSF overexpression suppressed the proliferation and migration of ccRCC cells. Moreover, the expression of CTSF was shown to be associated with several immune-infiltrating cells and immunomodulators in ccRCC. These results indicated that CTSF might be a promising diagnostic and prognostic marker in ccRCC.
Development of DNA aptamers targeting B7H3 by hybrid-SELEX: an alternative to antibodies for immuno-assays
Authors: Maradani Bhavani Shankar , Parameswaran Sowmya , Subramanian Krishnakumar 
Published: June 2024

AbstractAntibodies have been extensively used in numerous applications within proteomics-based technologies, requiring high sensitivity, specificity, a broad dynamic range for detection, and precise, reproducible quantification. Seeking alternatives to antibodies due to several inherent limitations of antibodies is an area of active research of tremendous importance. Recently, aptamers have been receiving increasing attention, because they not only have all of the advantages of antibodies, but also have unique advantages, such as thermal stability, low cost, and unlimited applications. Aptamers are gaining importance in immunological studies and can potentially replace antibodies in immunoassays. B7H3, an immunoregulatory protein belonging to the B7 family, is an attractive and promising target due to its overexpression in several tumor tissues while exhibiting limited expression in normal tissues. This study employed hybrid-SELEX with next-generation sequencing to select ssDNA aptamers specifically binding to the B7H3 protein. These aptamers demonstrated versatility across various assays, including flow cytometry, dot-blot, and immunohistochemistry. Effective performance in sandwich dot-blot assays and western blot analysis suggests their potential for diagnostic applications and demonstrates their adaptability and cost-effectiveness in diverse protein detection techniques.
Satellite-based analysis of top of atmosphere shortwave radiative forcing trend induced by biomass burning aerosols over South-Eastern Atlantic
Authors: Jouan Caroline , Myhre Gunnar 
Published: June 2024

AbstractThis study investigates long-term changes in the shortwave direct aerosol radiative effect (DARE) at the top of the atmosphere (TOA) induced by biomass burning aerosol (BBA) transported from southern Africa to the south-eastern Atlantic (SEA) stratocumulus region during extended fire seasons. The evolution since 2002 of aerosol, cloud properties, and TOA shortwave outgoing radiation from advanced passive satellite sensors are presented, as well as the observational trend in clear-sky DAREclrand the retrieval trend in all-sky DAREall. Supplemented by chemical transport model simulations, we estimate that DAREclrhas become more negative (−0.09 ± 0.06 W m−2yr−1) due to increased aerosol presence in SEA. Meanwhile, DAREallhas become more positive ( + 0.04 ± 0.15 W m−2yr−1) due to aerosols in cloudy sky regions. This study reveals satellite capabilities in capturing complex BBA-cloud-solar radiation interactions for accurate radiative forcing estimates and projections.
Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility
Authors: Forutan Mehrnush , Engle Bailey N. , Chamberlain Amanda J. , Ross Elizabeth M. , Nguyen Loan T. , D’Occhio Michael J. , Snr Alf Collins , Kho Elise A. , Fordyce Geoffry , Speight Shannon , Goddard Michael E. , Hayes Ben J. 
Published: June 2024

AbstractMost genetic variants associated with fertility in mammals fall in non-coding regions of the genome and it is unclear how these variants affect fertility. Here we use genome-wide association summary statistics for Heifer puberty (pubertal or not at 600 days) from 27,707 Bos indicus, Bos taurus and crossbred cattle; multi-trait GWAS signals from 2119 indicine cattle for four fertility traits, including days to calving, age at first calving, pregnancy status, and foetus age in weeks (assessed by rectal palpation of the foetus); and expression quantitative trait locus for whole blood from 489 indicine cattle, to identify 87 putatively functional genes affecting cattle fertility. Our analysis reveals a significant overlap between the set of cattle and previously reported human fertility-related genes, impling the existence of a shared pool of genes that regulate fertility in mammals. These findings are crucial for developing approaches to improve fertility in cattle and potentially other mammals.
Neural network approach to quasiparticle dispersions in doped antiferromagnets
Authors: Lange Hannah , Döschl Fabian , Carrasquilla Juan , Bohrdt Annabelle 
Published: June 2024

AbstractNumerically simulating large, spinful, fermionic systems is of great interest in condensed matter physics. However, the exponential growth of the Hilbert space dimension with system size renders exact quantum state parameterizations impractical. Owing to their representative power, neural networks often allow to overcome this exponential scaling. Here, we investigate the ability of neural quantum states (NQS) to represent the bosonic and fermionict − Jmodel – the high interaction limit of the Hubbard model – on various 1D and 2D lattices. Using autoregressive, tensorized recurrent neural networks (RNNs), we study ground state representations upon hole doping the half-filled system. Additionally, we propose a method to calculate quasiparticle dispersions, applicable to any network architecture or lattice geometry, and allowing to infer the low-energy physics from NQS. By analyzing the strengths and weaknesses of the RNN ansatz we shed light on the challenges and promises of NQS for simulating bosonic and fermionic systems.
Hydrogels for next generation neural interfaces
Authors: Cheng Simin , Zhu Ruiqi , Xu Xiaomin 
Published: June 2024

AbstractOvercoming the mechanical disparities between implantable neural electrodes and biological tissue is crucial in mitigating immune responses, reducing shear motion, and ensuring durable functionality. Emerging hydrogel-based neural interfaces, with their volumetric capacitance, customizable conductivity, and tissue-mimicking mechanical properties, offer a more efficient, less detrimental, and chronically stable alternative to their rigid counterparts. Here, we provide an overview of the exceptional advantages of hydrogels for the development of next-generation neural interfaces and highlight recent advancements that are transforming the field.
Slab buckling as a driver for rapid oscillations in Indian plate motion and subduction rate
Authors: van der Wiel Erik , Pokorný Jakub , Čížková Hana , Spakman Wim , van den Berg Arie P. , van Hinsbergen Douwe J. J. 
Published: June 2024

AbstractPlate tectonics is primarily driven by the constant gravitational pull of slabs where oceanic lithosphere sinks into the mantle at subduction zones. Under stable plate boundary configurations, changes in plate motion are then thought to occur gradually. Surprisingly, recent high-resolution Indian plate reconstructions revealed rapid (2–3 Million-year) plate velocity oscillations of ±50 %. We show, through numerical experiments, that the buckling of slabs in the mantle transition zone causes such oscillations. This buckling results from the deceleration of slabs as they sink into the lower mantle. The amplitude and period of buckling-associated oscillations depend on average subduction velocity and the available space in the mantle transition zone. The oscillations also affect the upper plate which may explain enigmatic observations of episodic deformation and fluid flow in subduction-related orogens. We infer that the slab pull that drives plate tectonics is generated in just the top few hundred kilometers of the mantle.