bluuebunny/crossref_metadata_2025_split huggingface dataset:
Isolation of a spermatozoal immobilization factor from Staphylococcus aureus filtrates
Authors: Prabha Vijay , Gupta Tanushree , Kaur Siftjit , Kaur Navchetan , Kala Sushila , Singh Arvind 
Published: September 2009

Staphylococcus aureus isolated from the cervix of an infertile woman was found to cause complete immobilization of human spermatozoa in vitro. Only the cell culture and cell-free supernatant showed immobilization activity, indicating that the sperm immobilization factor might be released extracellularly by the organism because no activity was observed with the washed cells. Heat treatment of the supernatant at 60 °C for 10 min waived its immobilizing activity, indicating that the active component may be a protein. The bioactive molecule from the supernatant was purified to homogeneity by ammonium sulfate precipitation, gel permeation chromatography, and ion exchange chromatography. Sperm immobilization factor (SIF) was found to be an ~20 kDa protein. SIF at a concentration of 10 µg/mL was required to cause 100% immobilization of human spermatozoa after 30 min of incubation at 37 °C, whereas a concentration of 150 µg/mL caused immediate immobilization, and a concentration of 200 µg/mL resulted in instant loss of viability of human spermatozoa, observed by eosin–nigrosin staining. Scanning electron microscopy showed that the treatment of human spermatozoa with SIF caused multiple defects in the head, midpiece, neck, and tail region of human spermatozoa.
The fate and efficacy of benomyl applied to field soils to suppress activity of arbuscular mycorrhizal fungi
Authors: O’Connor Patrick , Manjarrez Maria , Smith Sally E. 
Published: September 2009

A systematic application of the fungicide benomyl was used to follow up the suppression of arbuscular mycorrhizal (AM) colonization and to determine its fungitoxic activity and persistence at different depths. Repeated applications of benomyl reduced AM colonization mainly in the upper 0–4 cm layer of the treated soils. Furthermore, AM colonization decreased with soil depth. The activity and persistence of this fungicide was reduced over small changes in depth in the first 10 cm of the soil profile beneath a semiarid herbland at Brookfield Conservation Park (South Australia). Repeated applications of the fungicide only slightly increased the levels of toxicity in the soils, probably because of biodegradation of the fungicide in soils with a recent history of exposure to the fungicide. The decline in fungicide activity at depth was correlated with a decline in the suppressive effect of the fungicide on the activity of AM fungi.
Truncated hemoglobins in Frankia CcI3: effects of nitrogen source, oxygen concentration, and nitric oxide
Authors: Coats Vanessa , Schwintzer Christa R. , Tjepkema John D. 
Published: September 2009

Frankia strain CcI3 produces 2 truncated hemoglobins, HbN and HbO. Using ion-exchange chromatography, we characterized the expression of the relative amounts of HbN and HbO in −N (nitrogen-fixing) cultures and +N (nitrogen-supplemented) cultures. The −N cultures maintained an approximately constant ratio of HbO to HbN throughout the life of the culture, with HbO constituting 80%–85% of the total hemoglobin produced. In contrast, in +N cultures, HbN was observed to increase over time and HbO decreased. Total hemoglobin as a fraction of total protein was approximately constant throughout the growth phase in −N cultures, while it decreased somewhat in +N cultures. Subjecting −N cultures to a NO generator resulted in increased production of HbN, relative to the controls. Nitrite accumulated in +N cultures, but not in −N cultures. This suggests that the greater amount of HbN in +N cultures might be due to NO produced by the reduction of nitrite. The effects of O2 concentration were determined in +N cultures. Cultures grown in 1% O2 produced about 4 times more HbO than cultures grown in 20% O2. Overall, these results provide evidence for a role of HbN in NO oxidation and for a role of HbO in adaptation to low oxygen concentrations.
Hydrogen sulfide attenuates the pathogenesis of pulmonary fibrosis induced by bleomycin in rats
Authors: Fang Liping , Li Hong , Tang Chaoshu , Geng Bin , Qi Yongfen , Liu Xinmin 
Published: September 2009

The present study investigated the role of the endogenous cystathionine γ-lyase (CSE) / hydrogen sulfide pathway in the pathogenesis of pulmonary fibrosis. Rats treated with intratracheal bleomycin were exposed either to the H2S donor NaHS or to saline. The results on day 7 showed that plasma H2S concentration and pulmonary CSE activity (H2S production rate) were significantly lower in rats treated with bleomycin and saline (fibrosis-alone) than in controls, whereas on day 28 plasma H2S concentration was higher and pulmonary CSE activity was the same as that of controls. The relative CSE mRNA level in the lungs of rats treated with bleomycin was significantly higher than control values on days 7 and 28. After exposure to NaHS, the total lung hydroxyproline content and the malondialdehyde (MDA) content were both significantly lower, with no difference observed between NaHS high-dose and low-dose treatments. Further, MDA formation stimulated by the free radical-generating system (FRGS) in vitro was lower in lung tissue incubated with NaHS than it was in tissue incubated with FRGS alone. These results suggest that NaHS administration ameliorated the pulmonary fibrosis induced by bleomycin in rats and that this protective effect of H2S may be mediated by its antioxidative action.
Baroreflex sensitivity is reduced in obese normotensive children and adolescents
Authors: Lazarova Zuzana , Tonhajzerova Ingrid , Trunkvalterova Zuzana , Brozmanova Andrea , Honzíková Natasa , Javorka Kamil , Baumert Mathias , Javorka Michal 
Published: September 2009

Obesity is associated with autonomic nervous system dysfunction. The aim of the study was to evaluate baroreflex sensitivity, an indicator of autonomic nervous function, in 20 obese children and adolescents in comparison with 20 age- and sex-matched nonobese subjects. All subjects were examined in the supine position over a period of 50 min. Systolic blood pressure (SBP) and RR intervals were monitored continuously. Baroreflex sensitivity was assessed by cross-spectral analysis of SBP and RR interval oscillations (BRS index) and SBP and heart rate oscillations (BRSf index) within the low frequency range (0.04–0.15 Hz). Sensitivity was determined in 3 time intervals of 3 min each to evaluate changes during rest. The BRS index was significantly lower in obese children and adolescents than in the nonobese control group (p = 0.002). Significant changes in the BRS index over time (p = 0.004) were found only in nonobese subjects. In contrast, the BRSf index increased over time in both groups (p = 0.01), and no significant between-group difference was detected. In conclusion, obese children and adolescents show decreased resting baroreflex sensitivity with less variation compared with nonobese subjects. The BRS and BRSf indices appear to be only partially correlated.
Potential for adaptation-by-time in sockeye salmon (Oncorhynchus nerka): the interactions of body size and in-stream reproductive life span with date of arrival and breeding location
Authors: Doctor K. K. , Quinn T. P. 
Published: September 2009

In salmonid fishes, the tendency to return to the natal site for breeding leads to reproductively isolated, locally adapted populations. In addition to this isolation-by-space, the heritability of breeding date can result in temporal segregation or isolation of breeding units. We examined the interaction between breeding location (spatial segregation) and arrival date (temporal segregation) for two fitness-related traits, reproductive life span and body size, of sockeye salmon ( Oncorhynchus nerka (Walbaum in Artedi, 1792)) in a small Alaskan stream. Analysis of data on tagged individuals over 9 years revealed that both males and females arriving early to the spawning grounds tended to spawn farther upstream than those arriving later, demonstrating the potential for segregation in time and space within the population. Both body length and reproductive life span also consistently varied with arrival date. Larger males and females entered the stream before smaller individuals, and individuals of both sexes that arrived early lived longer in the stream than those that arrived later. However, neither reproductive life span nor body size varied significantly with breeding location, indicating that the linkage between spatial and temporal structure in this breeding population is incomplete, and that segregation in time may currently be the dominant component of within-population structure.
False killer whale (Pseudorca crassidens) echolocation and acoustic disruption: implications for longline bycatch and depredation
Authors: Mooney T. A. , Pacini A. F. , Nachtigall P. E. 
Published: September 2009

False killer whales ( Pseudorca crassidens (Owen, 1846)) depredate fish caught by the North Pacific pelagic longline fishery, resulting in loss of target species catch and the whales themselves becoming bycaught. This incidental take of false killer whales exceeds sustainable levels. In an effort to address a potential solution to reducing this depredation and bycatch, we tested an acoustic device designed to deter false killer whales from approaching longlines by reducing the whales’ echolocation performance capabilities. The device produced a series of complex, broadband signals (1–250 kHz) at high intensity levels (up to 182 dB). In the experiment, a trained false killer whale was asked to detect a target in the presence or absence of the acoustic device. Baseline performance capabilities were 95% correct responses. Initially, the device reduced the whale’s echolocation performance to chance levels. However, subsequent sessions demonstrated improvement in echolocation performance up to 85%. This improvement was likely a result of behaviorally adapting to the task and a decrease in the source level of the echolocation “disruptor”. The results underscore the challenges in using acoustic devices to reduce depredation and bycatch, and demonstrate the need for concern regarding anthropogenic noise levels and effects on odontocete echolocation capabilities.
The TF-603A/G gene promoter polymorphism and circulating monocyte tissue factor gene expression in healthy volunteers
Authors: Reny Jean-Luc , Laurendeau Ingrid , Fontana Pierre , Bièche Ivan , Dupont Annabelle , Remones Véronique , Emmerich Joseph , Vidaud Michel , Aiach Martine , Gaussem Pascale 
Published: September 2009

SummaryThree single nucleotide polymorphisms (-603A/G, -1322C/T, -1812C/T) and one deletion/insertion polymorphism (-1208D/I) are present in the tissue factor (TF) gene promoter sequence. These polymorphisms are in complete linkage disequilibrium, determining two haplotypes with almost equal frequency. The -603A/-1208D/-1322C/-1812C haplotype, presently defined as TF-603A, has been linked to venous thromboembolic disease, with a potentially protecting effect. The effects of the TF-603A/G gene polymorphism on monocyte gene expression and on a whole-blood clotting time (WBCT) are not known. We determined the WBCT in basal conditions (H0) and after 4 hours of LPS stimulation ex vivo (H4LPS) on blood samples from 100 young healthy caucasian male subjects on 2 visits, 7 days apart. Monocyte TF mRNA was quantified at H0 and H4LPS by real-time quantitative reverse-transcription PCR. The monocyte TF mRNA values determined at the first and second visits were concordant. In H4LPS samples, TF mRNA levels were increased 70-fold. The TF-603A haplotype was associated with 40%-lower TF mRNA levels at H0 (P=0.0002) and this association followed the same trend but was no longer significant at H4LPS. At H4LPS, TF mRNA levels were associated with WBCT shortening (P=0.0003). WBCT at H0 was not concordant over time, precluding any genotype-phenotype analysis. WBCT at H4LPS was concordant over time but was not related to the TF-603A/G polymorphism. The TF-603A/G gene promoter polymorphism thus significantly influences constitutive TF gene expression in human monocytes but has no major effect on TF gene expression or on WBCT in LPS stimulated conditions.
Adaptive Relevance Matrices in Learning Vector Quantization
Authors: Schneider Petra , Biehl Michael , Hammer Barbara 
Published: September 2009

We propose a new matrix learning scheme to extend relevance learning vector quantization (RLVQ), an efficient prototype-based classification algorithm, toward a general adaptive metric. By introducing a full matrix of relevance factors in the distance measure, correlations between different features and their importance for the classification scheme can be taken into account and automated, and general metric adaptation takes place during training. In comparison to the weighted Euclidean metric used in RLVQ and its variations, a full matrix is more powerful to represent the internal structure of the data appropriately. Large margin generalization bounds can be transferred to this case, leading to bounds that are independent of the input dimensionality. This also holds for local metrics attached to each prototype, which corresponds to piecewise quadratic decision boundaries. The algorithm is tested in comparison to alternative learning vector quantization schemes using an artificial data set, a benchmark multiclass problem from the UCI repository, and a problem from bioinformatics, the recognition of splice sites for C. elegans.
Dissociative Disorders in a Psychiatric Institute in India - A Selected Review and Patterns Over a Decade
Authors: Chaturvedi Santosh K. , Desai Geetha , Shaligram Deepika 
Published: September 2009

Background: The prevalence — and type — of dissociative disorders is considered to vary across cultures and over time. Aims: The aim of the study was to examine patterns of dissociative disorders among subjects attending psychiatric services over a period of 10 years. Methods: The sample consisted of both inpatients and outpatients attending a psychiatric hospital between 1999 and 2008. Information of those subjects diagnosed to have dissociative disorders was reviewed. A semi-structured proforma was used to collect information about demographic details and diagnosis. Results: A total of 893 patients had been diagnosed with dissociative disorder over the past decade: 591 (66%) were outpatients and 302 (34%) were inpatients. The proportion of patients diagnosed with dissociative disorders ranged between 1.5 and 15.0 per 1,000 for outpatients and between 1.5 and 11.6 per 1,000 for inpatients. The majority of patients were diagnosed with dissociative motor disorder (43.3% outpatients, 37.7% inpatients), followed by dissociative convulsions (23% outpatients, 27.8% inpatients). Female preponderance was seen across all sub-types of dissociative disorder except dissociative fugue. Conclusions: Dissociative disorders are still commonly diagnosed in both inpatient and outpatient settings. Dissociative motor disorders and dissociative convulsions are the most common disorders. Unlike in the West, dissociative identity disorders were rarely diagnosed; instead, possession states were commonly seen in the Indian population, indicating cross-cultural disparity.
GM-CSF and IL-4 induce dendritic cell differentiation and disrupt osteoclastogenesis through M-CSF receptor shedding by up-regulation of TNF-α converting enzyme (TACE)
Authors: Hiasa Masahiro , Abe Masahiro , Nakano Ayako , Oda Asuka , Amou Hiroe , Kido Shinsuke , Takeuchi Kyoko , Kagawa Kumiko , Yata Kenichiro , Hashimoto Toshihiro , Ozaki Shuji , Asaoka Kenzo , Tanaka Eiji , Moriyama Keiji , Matsumoto Toshio 
Published: September 2009

AbstractMonocytes give rise to macrophages, osteoclasts (OCs), and dendritic cells (DCs). Macrophage colony-stimulating factor (M-CSF) and receptor activator of nuclear factor-kappaB (RANK) ligand induce OC differentiation from monocytes, whereas granulocyte-macrophage colony-stimulating factor (GM-CSF) and interleukin-4 (IL-4) trigger monocytic differentiation into DCs. However, regulatory mechanisms for the polarization of monocytic differentiation are still unclear. The present study was undertaken to clarify the mechanism of triggering the deflection of OC and DC differentiation from monocytes. GM-CSF and IL-4 abolished monocytic differentiation into OCs while inducing DC differentiation even in the presence of M-CSF and RANK ligand. GM-CSF and IL-4 in combination potently up-regulate tumor necrosis factor-α (TNF-α) converting enzyme (TACE) and activity in monocytes, causing ectodomain shedding of M-CSF receptor, resulting in the disruption of its phosphorylation by M-CSF as well as the induction of osteoclastogenesis from monocytes by M-CSF and RANK ligand. Interestingly, TACE inhibition robustly causes the resumption of the surface expression of M-CSF receptor on monocytes, facilitating M-CSF–mediated phosphorylation of M-CSF receptor and macrophage/OC differentiation while impairing GM-CSF– and IL-4–mediated DC differentiation from monocytes. These results reveal a novel proteolytic regulation of M-CSF receptor expression in monocytes to control M-CSF signaling and monocytic differentiation into macrophage/OC-lineage cells or DCs.
Generation of CD8+ T cell–mediated immunity against idiotype-negative lymphoma escapees
Authors: Varghese Bindu , Widman Adam , Do James , Taidi Behnaz , Czerwinski Debra K. , Timmerman John , Levy Shoshana , Levy Ronald 
Published: September 2009

AbstractWe investigated the ability of CpG-oligodeoxynucleotide to generate an anti-tumor CD8+ T-cell immune response and to synergize with passive antibody therapy. For these studies, we generated an antibody against the idiotype on the A20 B-cell lymphoma line. This antibody caused the regression of established tumors, but ultimately the tumors relapsed. The escaping surface IgG-negative tumor cells were resistant to both antibody-dependent cellular cytotoxicity and signaling-induced cell death. Addition of intratumoral CpG to antibody therapy cured large established tumors and prevented the occurrence of tumor escapees. The failure of the combination therapy in mice deficient for CD8+ T cells demonstrates the critical role of CD8+ T cells in tumor eradication. When mice were inoculated with 2 tumors and treated systemically with antibody followed by intratumoral CpG in just one tumor, both tumors regressed, indicating that a systemic immune response was generated. Although antibody therapy can eliminate tumor cells bearing the target antigen, it frequently selects for antigen loss variants. However, when a poly-specific T-cell response was generated against the tumor by intratumoral CpG, even large established tumors were cured. Such an immune response can prevent the emergence of antibody selected tumor escapees and provide long-lasting tumor protection.
CD56+ human blood dendritic cells effectively promote TH1-type γδ T-cell responses
Authors: Gruenbacher Georg , Gander Hubert , Rahm Andrea , Nussbaumer Walter , Romani Nikolaus , Thurnher Martin 
Published: September 2009

AbstractCD56+ human dendritic cells (DCs) have recently been shown to differentiate from monocytes in response to GM-CSF and type 1 interferon in vitro. We show here that CD56+ cells freshly isolated from human peripheral blood contain a substantial subset of CD14+CD86+HLA-DR+ cells, which have the appearance of intermediate-sized lymphocytes but spontaneously differentiate into enlarged DC-like cells with substantially increased HLA-DR and CD86 expression or into fully mature CD83+ DCs in response to appropriate cytokines. Stimulation of CD56+ cells containing both DCs and abundant γδ T cells with zoledronate and interleukin-2 (IL-2) resulted in the rapid expansion of γδ T cells as well as in IFN-γ, TNF-α, and IL-1β but not in IL-4, IL-10, or IL-17 production. IFN-γ, TNF-α, and IL-1β production were almost completely abolished by depleting CD14+ cells from the CD56+ subset before stimulation. Likewise, depletion of CD14+ cells dramatically impaired γδ T-cell expansion. IFN-γ production could also be blocked by neutralizing the effects of endogenous IL-1β and TNF-α. Conversely, addition of recombinant IL-1β, TNF-α, or both further enhanced IFN-γ production and strongly up-regulated IL-6 production. Our data indicate that CD56+ DCs from human blood are capable of stimulating CD56+ γδ T cells, which may be harnessed for immunotherapy.
Functional Screening of FxxLF-Like Peptide Motifs Identifies SMARCD1/BAF60a as an Androgen Receptor Cofactor that Modulates TMPRSS2 Expression
Authors: van de Wijngaart Dennis J. , Dubbink Hendrikus J. , Molier Michel , de Vos Carola , Trapman Jan , Jenster Guido 
Published: September 2009

Abstract
Androgen receptor (AR) transcriptional activity is tightly regulated by interacting cofactors and cofactor complexes. The best described cofactor interaction site in the AR is the hormone-induced coactivator binding groove in the ligand-binding domain, which serves as a high-affinity docking site for FxxLF-like motifs. This study aimed at identifying novel AR cofactors by in silico selection and functional screening of FxxLF-like peptide motifs. Candidate interacting motifs were selected from a proteome-wide screening and from a supervised screening focusing on components of protein complexes involved in transcriptional regulation. Of the 104 peptides tested, 12 displayed moderate to strong in vivo hormone-dependent interactions with AR. For three of these, ZBTB16/PLZF, SMARCA4/BRG1, and SMARCD1/BAF60a, the full-length protein was tested for interaction with AR. Of these, BAF60a, a subunit of the SWI/SNF chromatin remodeling complex, displayed hormone-dependent interactions with AR through its FxxFF motif. Vice versa, recruitment of BAF60a by the AR required an intact coactivator groove. BAF60a depletion by small interfering RNA in LNCaP cells demonstrated differential effects on expression of endogenous AR target genes. AR-driven expression of TMPRSS2 was almost completely blocked by BAF60a small interfering RNA. In summary, our data demonstrate that BAF60a directly interacts with the coactivator groove in the AR ligand-binding domain via its FxxFF motif, thereby selectively activating specific AR-driven promoters.
‘There are too many of us to fix.’ Patients’ views of acceptable waiting times for hip and knee replacement
Authors: Conner-Spady Barbara , Sanmartin Claudia , Johnston Geoffrey , McGurran John , Kehler Melissa , Noseworthy Tom 
Published: September 2009

Objectives: To assess patients’ views of maximum acceptable waiting times (MAWT) for hip and knee replacement, associated factors and the accuracy of self-reported waiting times. Methods: We mailed 1000 questionnaires each to two random samples of patients either waiting for or who had received an arthroplasty within the preceding 3-12 months. We used linear regression to assess the determinants of patient MAWT, and content analysis to assess reasons for MAWT and ideal waiting time. Results: Of the 1330 responses, 1127 had MAWT data. The sample was 57% women; mean age was 70+11 years. Median self-reported and actual waiting time was eight months (Spearman correlation 5 0.70). Median MAWT was four months and ideal waiting time was two months. The most frequent reasons for MAWT were pain, quality of life and needing time to prepare for surgery. A longer MAWT was associated with younger age, group (waiting), a longer self-reported waiting time, better EQ-5D index, an acceptable waiting time, a perception of fairness and a view that others worse off on the list should go ahead. Conclusions: Patients’ views of acceptable waiting times are important for a fair process of establishing waiting time benchmarks for joint replacement.