bluuebunny/crossref_metadata_2025_split huggingface dataset:
Analyzing the regulation of metabolic pathways in human breast cancer
Authors: Schramm Gunnar , Surmann Eva-Maria , Wiesberg Stefan , Oswald Marcus , Reinelt Gerhard , Eils Roland , König Rainer 
Published: September 2010

Abstract

Background
Tumor therapy mainly attacks the metabolism to interfere the tumor's anabolism and signaling of proliferative second messengers. However, the metabolic demands of different cancers are very heterogeneous and depend on their origin of tissue, age, gender and other clinical parameters. We investigated tumor specific regulation in the metabolism of breast cancer.

Methods
For this, we mapped gene expression data from microarrays onto the corresponding enzymes and their metabolic reaction network. We used Haar Wavelet transforms on optimally arranged grid representations of metabolic pathways as a pattern recognition method to detect orchestrated regulation of neighboring enzymes in the network. Significant combined expression patterns were used to select metabolic pathways showing shifted regulation of the aggressive tumors.

Results
Besides up-regulation for energy production and nucleotide anabolism, we found an interesting cellular switch in the interplay of biosynthesis of steroids and bile acids. The biosynthesis of steroids was up-regulated for estrogen synthesis which is needed for proliferative signaling in breast cancer. In turn, the decomposition of steroid precursors was blocked by down-regulation of the bile acid pathway.

Conclusion
We applied an intelligent pattern recognition method for analyzing the regulation of metabolism and elucidated substantial regulation of human breast cancer at the interplay of cholesterol biosynthesis and bile acid metabolism pointing to specific breast cancer treatment.
The proliferation, apoptosis, invasion of endothelial-like epithelial ovarian cancer cells induced by hypoxia
Authors: Zhu Pengfei , Ning Yanxia , Yao Liangqing , Chen Mo , Xu Congjian 
Published: September 2010

AbstractBackgroundEpithelial ovarian cancer is one of the most malignant cancers in women because metastasis occurs in the most of patients by the time of diagnosis. Cancer cells have strong capacity to form angiogenesis or vasculogenic mimicry, which plays the major role in its malignant phenotype. Vasculogenic mimicry might contribute to the failure of the angiogenesis-targeted therapy strategies. Under the microenvironment of the tumor, hypoxia is the most common phenomena because of the vast energy and oxygen consuming. In the present study, the endothelial-like cells induced by hypoxia from SKOV-3 and ES-2 ovarian cancer cells were harvested to investigate the changes in their biological behaviors.MethodsThe endothelial-like cells from SKOV-3 and ES-2 cells were harvested by laser capture microdissection. The biological behaviors of the endothelial-like cells, including proliferation, cell cycle, apoptosis, invasion and telomerase activity were determined by MTT, FCM, Transwell chamber and TRAP-ELISA methods. HIF-1α is the most important factor for the behavior changes under hypoxic condition. Some other genes relative to biological behaviors are also changes following the changes of HIF-1α. In order to elucidate the underlying mechanisms for these changes by hypoxia, the relative genes expressions including HIF-1α, CyclinD1, Flk-1, VEGF, p53 and V-src were determined by real-time PCR.ResultsSKOV-3 and ES-2 cells were resistant to hypoxia by adoption of proliferation, apoptosis, differentiation and invasion. Combined with other studies, the more poorly cancer cells differentiate, the more strongly cells are resistant to hypoxia, the more possible to form vasculogenic mimicry. The changes in the expression of HIF-1α, and HIF-1α-dependent VEGF, Flk-1, Cyclin D1, and HIF-1α-independent p53 have been involved in this process.ConclusionsHIF-1α took an important role in the behavioral changes of SKOV-3 and ES-2 cells by hypoxia. At the same time, other mechanisms were also involved in this process.
Macrophage Migration Inhibitory Factor Elicits an Angiogenic Phenotype in Human Ectopic Endometrial Cells and Triggers the Production of Major Angiogenic Factors via CD44, CD74, and MAPK Signaling Pathways
Authors: Veillat Véronique , Carli Cédric , Metz Christine N. , Al-Abed Yousef , Naccache Paul H. , Akoum Ali 
Published: September 2010

Context: An active angiogenesis is required for ectopic endometrial tissue growth. Our previous studies led to the identification of macrophage migration inhibitory factor (MIF), which is markedly elevated in active, vascularized, and early-stage endometriotic lesions, as a potent mitogenic factor for endothelial cells.Objective: Our objective was to study the mechanisms by which MIF may stimulate angiogenesis in ectopic endometrial implantation sites.Design: Primary cultures of ectopic endometrial cells were exposed to MIF, and the release of major angiogenic factors with targeted disruption of MIF signaling pathways was assessed.Patients: Patients were women found to have endometriosis during laparoscopy.Setting: The study was conducted at a hospital and reproduction research laboratory.Interventions: Biopsies were removed from endometriotic lesions.Main Outcome Measures: Vascular endothelial cell growth factor (VEGF), IL-8, and monocyte chemotactic protein-1 (MCP-1) mRNA and protein levels and expression and small interfering RNA silencing of MIF CD74/CD44 receptor complex and phosphorylation of ERK and p38 MAPKs were evaluated.Results: MIF markedly up-regulated VEGF, IL-8, and MCP-1 expression in endometriotic cells. Such an effect was abolished by (S,R)-3-(4-hydroxyphenyl)-4,5-dihydro-5-isoxazole acetic acid methyl ester (ISO-1), a specific inhibitor of MIF, and significantly down-regulated after specific small interfering RNA silencing of CD44 or CD74. MIF treatment strongly activated ERK and p38 MAPKs, and specific inhibitors of both pathways completely blocked basal and MIF-induced VEGF, IL-8, and MCP-1 synthesis.Conclusions: These results show for the first time that MIF exerts a potent indirect angiogenic effect by interacting with ectopic endometrial cells and inducing the secretion of major angiogenic factors via CD44, CD74, and MAPK signaling pathways and provide evidence for a possible new mechanism underlying endometriosis development and pathophysiology.
Hearing Lost, Hearing Found: George Washington Cable and the Phono-Ethnographic Ear
Authors: Hochman Brian 
Published: September 2010

Hochman's essay uses the work of George Washington Cable to examine a far-reaching set of debates about media technology, auditory perception, and cultural difference that emerged during the 1880s and 1890s. The first half focuses on Cable's classic dialect novel The Grandissimes (1880)—a text that constantly signals its own inability to reproduce the speech and music of New Orleans's Afro-Creole community—in order to illustrate the growing sense among late-nineteenth-century U.S. writers that the written word was fundamentally inadequate as a sound archive. The second half turns to the work of three prominent U.S. ethnographers (Franz Boas, Jesse Walter Fewkes, and Benjamin Ives Gilman) who posited the newly invented phonograph as a more ideal form of cultural listening and writing.
“Hearing Lost, Hearing Found” combines literary and media history to advance two overlapping arguments. On the one hand, Hochman makes a case for the centrality of anthropological theories of sound (especially the emergence of sound technology) to Cable's work and thought. On the other, he demonstrates more broadly that the phonograph's documentary authority evolved out of late-nineteenth-century print culture's engagement with the “sound” of race. It was only after U.S. intellectuals began to recognize the extent to which the acts of listening and writing are mediated (and potentially distorted) by racial and cultural differences that the new technology of mechanical sound reproduction could make the old medium of the written word seem insufficient.
The presence of UV wavelengths improves the temporal resolution of the avian visual system
Authors: Rubene Diana , Håstad Olle , Tauson Ragnar , Wall Helena , Ödeen Anders 
Published: September 2010

SUMMARY
The ability to perceive rapid movement is an essential adaptation in birds, which are involved in rapid flight, pursuing prey and escaping predators. Nevertheless, the temporal resolution of the avian visual systems has been less well explored than spectral sensitivity. There are indications that birds are superior to humans in their ability to detect movement, as suggested by higher critical flicker frequencies (CFFs). It has also been implied, but not properly tested, that properties of CFF, as a function of light intensity, are affected by the spectral composition of light. This study measured CFF in the chicken, Gallus gallus L., using four different light stimuli – white, full-spectrum (white with addition of UV), yellow (590 nm) and UV (400 nm) – and four light intensity levels, adjusted to relative cone sensitivity. The results showed significantly higher CFF values for full-spectrum compared with white light, as well as a steeper rate of increase with intensity. The presence of UV wavelengths, previously demonstrated to affect mate choice and foraging, appears to be important also for detection of rapid movement. The yellow and UV light stimuli yielded rather similar CFFs, indicating no special role for the double cone in flicker detection.
The trade-off between growth rate and locomotor performance varies with perceived time until breeding
Authors: Lee Who-Seung , Monaghan Pat , Metcalfe Neil B. 
Published: September 2010

SUMMARYEnvironmental circumstances can cause changes in early growth patterns that subsequently affect the adult phenotype. Here we investigated how different growth trajectories affected subsequent locomotor performance, and how such effects were influenced by the perceived time until the key life-history event of reproduction. Using juvenile three-spined sticklebacks Gasterosteus aculeatus, we show that a brief period of manipulated temperature in early life (independent of food supply) caused effects on skeletal growth trajectory not only during the manipulation itself, but also during a subsequent compensatory phase. The outcome of these changes was that fish in all treatment groups reached the same average size by sexual maturity, despite having different growth patterns. However, their growth trajectory had impacts on both pre-breeding swimming endurance and its decline over the course of the breeding season, such that swimming ability was negatively correlated with skeletal growth rate during the compensation period. We also show for the first time that ‘negative compensation’ (i.e. a decelerating growth trajectory) led to an improved swimming performance compared with steadily growing controls. Replicate experiments and photoperiod manipulations, moreover, revealed that the effects of growth rate on subsequent swimming performance were greater when the perceived time until the breeding season was shorter. These results show that the costs of accelerated or decelerated growth can last well beyond the time over which growth rates differ, and are affected by the time available until an approaching life history event such as reproduction, possibly because of the time available to repair the damage.
Peripheral modulation of pheromone response by inhibitory host compound in a beetle
Authors: Andersson Martin N. , Larsson Mattias C. , Blaženec Miroslav , Jakuš Rastislav , Zhang Qing-He , Schlyter Fredrik 
Published: September 2010

SUMMARY
We identified several compounds, by gas chromatographic–electroantennographic detection (GC–EAD), that were antennally active in the bark beetle Ips typographus and also abundant in beetle-attacked spruce trees. One of them, 1,8-cineole (Ci), strongly inhibited the attraction to pheromone in the field. Single-sensillum recordings (SSRs) previously showed olfactory receptor neurons (ORNs) on I. typographus antennae selectively responding to Ci. All Ci neurons were found within sensilla co-inhabited by a pheromone neuron responding to cis-verbenol (cV); however, in other sensilla, the cV neuron was paired with a neuron not responding to any test odorant. We hypothesized that the colocalization of ORNs had a functional and ecological relevance. We show by SSR that Ci inhibited spontaneous activity of the cV neuron only in sensilla in which the Ci neuron was also present. Using mixtures of cV and Ci, we further show that responses to low doses (1–10 ng) of cV were significantly reduced when the colocalized Ci neuron simultaneously responded to high doses (1–10 μg) of Ci. This indicated that the response of the Ci neuron, rather than ligand–receptor interactions in the cV neuron, caused the inhibition. Moreover, cV neurons paired with Ci neurons were more sensitive to cV alone than the ones paired with the non-responding ORN. Our observations question the traditional view that ORNs within a sensillum function as independent units. The colocalization of ORNs might sharpen adaptive responses to blends of semiochemicals with different ecological significance in the olfactory landscape.
Effects of competitive prey capture on flight behavior and sonar beam pattern in paired big brown bats,Eptesicus fuscus
Authors: Chiu Chen , Reddy Puduru Viswanadha , Xian Wei , Krishnaprasad Perinkulam S. , Moss Cynthia F. 
Published: September 2010

SUMMARYForaging and flight behavior of echolocating bats were quantitatively analyzed in this study. Paired big brown bats, Eptesicus fuscus, competed for a single food item in a large laboratory flight room. Their sonar beam patterns and flight paths were recorded by a microphone array and two high-speed cameras, respectively. Bats often remained in nearly classical pursuit (CP) states when one bat is following another bat. A follower can detect and anticipate the movement of the leader, while the leader has the advantage of gaining access to the prey first. Bats in the trailing position throughout the trial were more successful in accessing the prey. In this study, bats also used their sonar beam to monitor the conspecific's movement and to track the prey. Each bat tended to use its sonar beam to track the prey when it was closer to the worm than to another bat. The trailing bat often directed its sonar beam toward the leading bat in following flight. When two bats flew towards each other, they tended to direct their sonar beam axes away from each other, presumably to avoid signal jamming. This study provides a new perspective on how echolocating bats use their biosonar system to coordinate their flight with conspecifics in a group and how they compete for the same food source with conspecifics.
Alternative developmental pathways associated with diapause regulated by temperature and maternal influences in embryos of the annual killifish Austrofundulus limnaeus
Authors: Podrabsky Jason E. , Garrett Ian D. F. , Kohl Zachary F. 
Published: September 2010

SUMMARY
Embryos of the annual killifish Austrofundulus limnaeus enter a state of developmental arrest termed diapause as part of their normal developmental program. Diapause can occur at two distinct developmental stages in this species, termed diapause II and III. When incubated at 25°C, most embryos enter diapause II, whereas a small percentage of ‘escape’ embryos develop continuously past diapause II and enter diapause III. Control of entry into diapause II can be altered by maternal influences and the incubation environment experienced by the embryos. Young females produce a higher proportion of escape embryos than do older females. In addition, increasing the incubation temperature from 25 to 30°C induces all embryos to escape from diapause. Surprisingly, escape embryos follow a different morphological and physiological developmental trajectory than do embryos that enter diapause II. Development of anterior structures is advanced compared with that of posterior structures in escape embryos when compared with embryos that will enter diapause II. The difference in timing of development for these two trajectories is consistent with changes observed between two species but is very atypical of variation observed within a species. Importantly, the two developmental pathways diverge early in development, during the segmentation period, when, according to evolutionary theory, constraint on developmental pathways should be relatively high. The possession of alternative developmental pathways in a vertebrate embryo is a novel finding, the ecological and evolutionary importance of which is still unknown, but potentially significant in terms of life-history evolution.
Aerodynamic characteristics of flying fish in gliding flight
Authors: Park Hyungmin , Choi Haecheon 
Published: September 2010

SUMMARYThe flying fish (family Exocoetidae) is an exceptional marine flying vertebrate, utilizing the advantages of moving in two different media, i.e. swimming in water and flying in air. Despite some physical limitations by moving in both water and air, the flying fish has evolved to have good aerodynamic designs (such as the hypertrophied fins and cylindrical body with a ventrally flattened surface) for proficient gliding flight. Hence, the morphological and behavioral adaptations of flying fish to aerial locomotion have attracted great interest from various fields including biology and aerodynamics. Several aspects of the flight of flying fish have been determined or conjectured from previous field observations and measurements of morphometric parameters. However, the detailed measurement of wing performance associated with its morphometry for identifying the characteristics of flight in flying fish has not been performed yet. Therefore, in the present study, we directly measure the aerodynamic forces and moment on darkedged-wing flying fish (Cypselurus hiraii) models and correlated them with morphological characteristics of wing (fin). The model configurations considered are: (1) both the pectoral and pelvic fins spread out, (2) only the pectoral fins spread with the pelvic fins folded, and (3) both fins folded. The role of the pelvic fins was found to increase the lift force and lift-to-drag ratio, which is confirmed by the jet-like flow structure existing between the pectoral and pelvic fins. With both the pectoral and pelvic fins spread, the longitudinal static stability is also more enhanced than that with the pelvic fins folded. For cases 1 and 2, the lift-to-drag ratio was maximum at attack angles of around 0 deg, where the attack angle is the angle between the longitudinal body axis and the flying direction. The lift coefficient is largest at attack angles around 30∼35 deg, at which the flying fish is observed to emerge from the sea surface. From glide polar, we find that the gliding performance of flying fish is comparable to those of bird wings such as the hawk, petrel and wood duck. However, the induced drag by strong wing-tip vortices is one of the dominant drag components. Finally, we examine ground effect on the aerodynamic forces of the gliding flying fish and find that the flying fish achieves the reduction of drag and increase of lift-to-drag ratio by flying close to the sea surface.
Host gender and offspring quality in a flea parasitic on a rodent
Authors: Khokhlova Irina S. , Serobyan Vahan , Degen A. Allan , Krasnov Boris R. 
Published: September 2010

SUMMARY
The quality of offspring produced by parent fleas (Xenopsylla ramesis) fed on either male or female rodent hosts (Meriones crassus) was studied. The emergence success, duration of development, resistance to starvation upon emergence and body size of the flea offspring were measured. It was predicted that offspring of fleas produced by parents that fed on male hosts (i) will survive better as pre-imago, (ii) will develop faster, (iii) will live longer under starvation after emergence and (iv) will be larger than offspring of fleas fed on female hosts. The emergence success of pre-imaginal fleas was relatively high, ranging from 46.9% to 100.0% and averaging 78.4±3.0%, and was not affected by host gender. The duration of development of pre-imaginal fleas depended on the gender of the host of parents and differed between male and female offspring, with female fleas developing faster. Furthermore, male fleas developed faster if their parents fed on female rather than on male hosts, whereas no difference in the duration of development between host genders was found in female fleas. The time to death under starvation did not depend on the gender of either the flea or the host. A newly emerged flea, on average, lived 31.9±1.0 days without access to food. The relationship between host gender and body size of male flea offspring was the only effect that supported the predictions. An increase in body size in male fleas could increase their mating success and, ultimately, their fitness.
Convergence of carbohydrate-biased intake targets in caged worker honeybees fed different protein sources
Authors: Altaye Solomon Z. , Pirk Christian W. W. , Crewe Robin M. , Nicolson Susan W. 
Published: September 2010

SUMMARYThe nutritional needs of bees are supplied by nectar carbohydrates and by protein and other nutrients in pollen but little is known of how bees achieve nutritional balance. Using newly emerged caged worker honeybees (Apis mellifera scutellata), we investigated whether bees maintain their intake target when confined to pairs of imbalanced complementary diets varying in protein to carbohydrate (P:C) ratio. Diets were formulated using three protein sources [casein, royal jelly or Feed-Bee® (a natural pollen substitute)] and sucrose. Within each protein type, honeybees switched between complementary diets and converged on the same P:C intake target. However, this target differed between protein types: P:C ratios were 1:12, 1:14 and 1:11 on casein, royal jelly and Feed-Bee® diets, respectively. Except for an early peak in protein consumption on royal jelly diets, these strongly convergent ratios remained constant over the 14 day experiment. This is probably due to the absence of brood, reflected in relatively stable values measured for haemolymph protein concentration and hypopharyngeal gland activation in bees on Feed-Bee® diets. Performance of caged workers was also assessed in terms of survival and ovarian activation. Survival was highest on casein diets and lowest on Feed-Bee® diets but ovarian activation was highest on royal jelly diets and lowest on casein diets. This may be due to additional components in Feed-Bee® and royal jelly (e.g. fatty acids), which are needed to activate the ovaries but also reduce survival. Nutrient intake of broodless workers is directly related to their own physiological requirements, and the strong carbohydrate bias may reflect the high metabolic rate of honeybees even under resting conditions.