bluuebunny/crossref_metadata_2025_split huggingface dataset:
Emerging technologies in citizen science and potential for insect monitoring
Authors: Sheard Julie Koch , Adriaens Tim , Bowler Diana E. , Büermann Andrea , Callaghan Corey T. , Camprasse Elodie C. M. , Chowdhury Shawan , Engel Thore , Finch Elizabeth A. , von Gönner Julia , Hsing Pen-Yuan , Mikula Peter , Rachel Oh Rui Ying , Peters Birte , Phartyal Shyam S. , Pocock Michael J. O. , Wäldchen Jana , Bonn Aletta 
Published: May 2024

Emerging technologies are increasingly employed in environmental citizen science projects. This integration offers benefits and opportunities for scientists and participants alike. Citizen science can support large-scale, long-term monitoring of species occurrences, behaviour and interactions. At the same time, technologies can foster participant engagement, regardless of pre-existing taxonomic expertise or experience, and permit new types of data to be collected. Yet, technologies may also create challenges by potentially increasing financial costs, necessitating technological expertise or demanding training of participants. Technology could also reduce people's direct involvement and engagement with nature. In this perspective, we discuss how current technologies have spurred an increase in citizen science projects and how the implementation of emerging technologies in citizen science may enhance scientific impact and public engagement. We show how technology can act as (i) a facilitator of current citizen science and monitoring efforts, (ii) an enabler of new research opportunities, and (iii) a transformer of science, policy and public participation, but could also become (iv) an inhibitor of participation, equity and scientific rigour. Technology is developing fast and promises to provide many exciting opportunities for citizen science and insect monitoring, but while we seize these opportunities, we must remain vigilant against potential risks.
This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Towards a standardized framework for AI-assisted, image-based monitoring of nocturnal insects
Authors: Roy D. B. , Alison J. , August T. A. , Bélisle M. , Bjerge K. , Bowden J. J. , Bunsen M. J. , Cunha F. , Geissmann Q. , Goldmann K. , Gomez-Segura A. , Jain A. , Huijbers C. , Larrivée M. , Lawson J. L. , Mann H. M. , Mazerolle M. J. , McFarland K. P. , Pasi L. , Peters S. , Pinoy N. , Rolnick D. , Skinner G. L. , Strickson O. T. , Svenning A. , Teagle S. , Høye T. T. 
Published: May 2024

Automated sensors have potential to standardize and expand the monitoring of insects across the globe. As one of the most scalable and fastest developing sensor technologies, we describe a framework for automated, image-based monitoring of nocturnal insects—from sensor development and field deployment to workflows for data processing and publishing. Sensors comprise a light to attract insects, a camera for collecting images and a computer for scheduling, data storage and processing. Metadata is important to describe sampling schedules that balance the capture of relevant ecological information against power and data storage limitations. Large data volumes of images from automated systems necessitate scalable and effective data processing. We describe computer vision approaches for the detection, tracking and classification of insects, including models built from existing aggregations of labelled insect images. Data from automated camera systems necessitate approaches that account for inherent biases. We advocate models that explicitly correct for bias in species occurrence or abundance estimates resulting from the imperfect detection of species or individuals present during sampling occasions. We propose ten priorities towards a step-change in automated monitoring of nocturnal insects, a vital task in the face of rapid biodiversity loss from global threats.
This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
The potential of acoustic monitoring of aquatic insects for freshwater assessment
Authors: Desjonquères Camille , Linke Simon , Greenhalgh Jack , Rybak Fanny , Sueur Jérôme 
Published: May 2024

Aquatic insects are a major indicator used to assess ecological condition in freshwater environments. However, current methods to collect and identify aquatic insects require advanced taxonomic expertise and rely on invasive techniques that lack spatio-temporal replication. Passive acoustic monitoring (PAM) is emerging as a non-invasive complementary sampling method allowing broad spatio-temporal and taxonomic coverage. The application of PAM in freshwater ecosystems has already proved useful, revealing unexpected acoustic diversity produced by fishes, amphibians, submerged aquatic plants, and aquatic insects. However, the identity of species producing sounds remains largely unknown. Among them, aquatic insects appear to be the major contributor to freshwater soundscapes. Here, we estimate the potential number of soniferous aquatic insects worldwide using data from the Global Biodiversity Information Facility. We found that four aquatic insect orders produce sounds totalling over 7000 species. This number is probably underestimated owing to poor knowledge of aquatic insects bioacoustics. We then assess the value of sound producing aquatic insects to evaluate ecological condition and find that they might be useful despite having similar responses in pristine and degraded environments in some cases. Both expert and automated identifications will be necessary to build international reference libraries and to conduct acoustic bioassessment in freshwaters.This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Towards acoustic monitoring of bees: wingbeat sounds are related to species and individual traits
Authors: Rodríguez Ballesteros Alberto , Desjonquères Camille , Hevia Violeta , García Llorente Marina , Ulloa Juan S. , Llusia Diego 
Published: May 2024

Global pollinator decline urgently requires effective methods to assess their trends, distribution and behaviour. Passive acoustics is a non-invasive and cost-efficient monitoring tool increasingly employed for monitoring animal communities. However, insect sounds remain highly unexplored, hindering the application of this technique for pollinators. To overcome this shortfall and support future developments, we recorded and characterized wingbeat sounds of a variety of Iberian domestic and wild bees and tested their relationship with taxonomic, morphological, behavioural and environmental traits at inter- and intra-specific levels. Using directional microphones and machine learning, we shed light on the acoustic signature of bee wingbeat sounds and their potential to be used for species identification and monitoring. Our results revealed that frequency of wingbeat sounds is negatively related with body size and environmental temperature (between-species analysis), while it is positively related with experimentally induced stress conditions (within-individual analysis). We also found a characteristic acoustic signature in the European honeybee that supported automated classification of this bee from a pool of wild bees, paving the way for passive acoustic monitoring of pollinators. Overall, these findings confirm that insect sounds during flight activity can provide insights on individual and species traits, and hence suggest novel and promising applications for this endangered animal group.
This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Time and habitat structure shape insect acoustic activity in the Amazon
Authors: Do Nascimento Leandro A. , Pérez-Granados Cristian , Alencar Janderson B. Rodrigues , Beard Karen H. 
Published: May 2024

Insects are the most diverse animal taxon on Earth and play a key role in ecosystem functioning. However, they are often neglected by ecological surveys owing to the difficulties involved in monitoring this small and hyper-diverse taxon. With technological advances in biomonitoring and analytical methods, these shortcomings may finally be addressed. Here, we performed passive acoustic monitoring at 141 sites (eight habitats) to investigate insect acoustic activity in the Viruá National Park, Brazil. We first describe the frequency range occupied by three soniferous insect groups (cicadas, crickets and katydids) to calculate the acoustic evenness index (AEI). Then, we assess how AEI varies spatially and temporally among habitat types, and finally we investigate the relationship between vegetation structure variables and AEI for each insect category. Overall, crickets occupied lower and narrower frequency bands than cicadas and katydids. AEI values varied among insect categories and across space and time. The highest acoustic activity occurred before sunrise and the lowest acoustic activity was recorded in pastures. Canopy cover was positively associated with cricket acoustic activity but not with katydids. Our findings contribute to a better understanding of the role of time, habitat and vegetation structure in shaping insect activity within diverse Amazonian ecosystems.This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Monitoring aerial insect biodiversity: a radar perspective
Authors: Bauer Silke , Tielens Elske K. , Haest Birgen 
Published: May 2024

In the current biodiversity crisis, populations of many species have alarmingly declined, and insects are no exception to this general trend. Biodiversity monitoring has become an essential asset to detect biodiversity change but remains patchy and challenging for organisms that are small, inconspicuous or make (nocturnal) long-distance movements. Radars are powerful remote-sensing tools that can provide detailed information on intensity, timing, altitude and spatial scale of aerial movements and might therefore be particularly suited for monitoring aerial insects and their movements. Importantly, they can contribute to several essential biodiversity variables (EBVs) within a harmonized observation system. We review existing research using small-scale biological and weather surveillance radars for insect monitoring and outline how the derived measures and quantities can contribute to the EBVs ‘species population’, ‘species traits’, ‘community composition’ and ‘ecosystem function’. Furthermore, we synthesize how ongoing and future methodological, analytical and technological advancements will greatly expand the use of radar for insect biodiversity monitoring and beyond. Owing to their long-term and regional-to-large-scale deployment, radar-based approaches can be a powerful asset in the biodiversity monitoring toolbox whose potential has yet to be fully tapped.
This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Temperature, not net primary productivity, drives continental-scale variation in insect flight activity
Authors: Tielens Elske K , Kelly Jeff 
Published: May 2024

The amount of energy available in a system constrains large-scale patterns of abundance. Here, we test the role of temperature and net primary productivity as drivers of flying insect abundance using a novel continental-scale data source: weather surveillance radar. We use the United States NEXRAD weather radar network to generate a near-daily dataset of insect flight activity across a gradient of temperature and productivity. Insect flight activity was positively correlated with mean annual temperature, explaining 38% of variation across sites. By contrast, net primary productivity did not explain additional variation. Grassland, forest and arid-xeric shrubland biomes differed in their insect flight activity, with the greatest abundance in subtropical and temperate grasslands. The relationship between insect flight abundance and temperature varied across biome types. In arid-xeric shrublands and in forest biomes the temperature–abundance relationship was indirectly (through net primary productivity) or directly (in the form of precipitation) mediated by water availability. These results suggest that temperature constraints on metabolism, development, or flight activity shape macroecological patterns in ectotherm abundance. Assessing the drivers of continental-scale patterns in insect abundance and their variation across biomes is particularly important to predict insect community response to warming conditions.This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Effects of nocturnal celestial illumination on high-flying migrant insects
Authors: Gao Boya , Hu Gao , Chapman Jason W. 
Published: May 2024

Radar networks hold great promise for monitoring population trends of migrating insects. However, it is important to elucidate the nature of responses to environmental cues. We use data from a mini-network of vertical-looking entomological radars in the southern UK to investigate changes in nightly abundance, flight altitude and behaviour of insect migrants, in relation to meteorological and celestial conditions. Abundance of migrants showed positive relationships with air temperature, indicating that this is the single most important variable influencing the decision to initiate migration. In addition, there was a small but significant effect of moonlight illumination, with more insects migrating on full moon nights. While the effect of nocturnal illumination levels on abundance was relatively minor, there was a stronger effect on the insects' ability to orientate close to downwind: flight headings were more tightly clustered on nights when the moon was bright and when cloud cover was sparse. This indicates that nocturnal illumination is important for the navigational mechanisms used by nocturnal insect migrants. Further, our results clearly show that environmental conditions such as air temperature and light levels must be considered if long-term radar datasets are to be used to assess changing population trends of migrants.
This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Continental-scale patterns in diel flight timing of high-altitude migratory insects
Authors: Haest Birgen , Liechti Felix , Hawkes Will L. , Chapman Jason , Åkesson Susanne , Shamoun-Baranes Judy , Nesterova Anna P. , Comor Vincent , Preatoni Damiano , Bauer Silke 
Published: May 2024

Many insects depend on high-altitude, migratory movements during part of their life cycle. The daily timing of these migratory movements is not random, e.g. many insect species show peak migratory flight activity at dawn, noon or dusk. These insects provide essential ecosystem services such as pollination but also contribute to crop damage. Quantifying the diel timing of their migratory flight and its geographical and seasonal variation, are hence key towards effective conservation and pest management. Vertical-looking radars provide continuous and automated measurements of insect migration, but large-scale application has not been possible because of limited availability of suitable devices. Here, we quantify patterns in diel flight periodicity of migratory insects between 50 and 500 m above ground level during March-October 2021 using a network of 17 vertical-looking radars across Europe. Independent of the overall daily migratory movements and location, peak migratory movements occur around noon, during crepuscular evening and occasionally the morning. Relative daily proportions of insect migration intensity and traffic during the diel phases of crepuscular-morning, day, crepuscular-evening and night remain largely equal throughout May-September and across Europe. These findings highlight, extend, and generalize previous regional-scale findings on diel migratory insect movement patterns to the whole of temperate Europe.This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Monitoring insect numbers and biodiversity with a vertical-beam entomological radar
Authors: Drake V. Alistair , Hao Zhenhua , Wang Haikou 
Published: May 2024

Concerns about perceived widespread declines in insect numbers have led to recognition of a requirement for long-term monitoring of insect biodiversity. Here we examine whether an existing, radar-based, insect monitoring system developed for research on insect migration could be adapted to this role. The radar detects individual larger (greater than 10 mg) insects flying at heights of 150–2550 m and estimates their size and mass. It operates automatically and almost continuously through both day and night. Accumulation of data over a ‘half-month’ (approx. 15 days) averages out weather effects and broadens the source area of the wind-borne observation sample. Insect counts are scaled or interpolated to compensate for missed observations; adjustment for variation of detectability with range and insect size is also possible. Size distributions for individual days and nights exhibit distinct peaks, representing different insect types, and Simpson and Shannon–Wiener indices of biodiversity are calculated from these. Half-month count, biomass and index statistics exhibit variations associated with the annual cycle and year to year changes that can be attributed to drought and periods of high rainfall. While species-based biodiversity measures cannot be provided, the radar's capacity to estimate insect biomass over a wide area indicates utility for tracking insect population sizes.
This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Three steps towards comparability and standardization among molecular methods for characterizing insect communities
Authors: Iwaszkiewicz-Eggebrecht Ela , Zizka Vera , Lynggaard Christina 
Published: May 2024

Molecular methods are currently some of the best-suited technologies for implementation in insect monitoring. However, the field is developing rapidly and lacks agreement on methodology or community standards. To apply DNA-based methods in large-scale monitoring, and to gain insight across commensurate data, we need easy-to-implement standards that improve data comparability. Here, we provide three recommendations for how to improve and harmonize efforts in biodiversity assessment and monitoring via metabarcoding: (i) we should adopt the use of synthetic spike-ins, which will act as positive controls and internal standards; (ii) we should consider using several markers through a multiplex polymerase chain reaction (PCR) approach; and (iii) we should commit to the publication and transparency of all protocol-associated metadata in a standardized fashion. For (i), we provide a ready-to-use recipe for synthetic cytochromecoxidase spike-ins, which enable between-sample comparisons. For (ii), we propose two gene regions for the implementation of multiplex PCR approaches, thereby achieving a more comprehensive community description. For (iii), we offer guidelines for transparent and unified reporting of field, wet-laboratory and dry-laboratory procedures, as a key to making comparisons between studies. Together, we feel that these three advances will result in joint quality and calibration standards rather than the current laboratory-specific proof of concepts.This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Towards holistic insect monitoring: species discovery, description, identification and traits for all insects
Authors: Meier Rudolf , Hartop Emily , Pylatiuk Christian , Srivathsan Amrita 
Published: May 2024

Holistic insect monitoring needs scalable techniques to overcome taxon biases, determine species abundances, and gather functional traits for all species. This requires that we address taxonomic impediments and the paucity of data on abundance, biomass and functional traits. We here outline how these data deficiencies could be addressed at scale. The workflow starts with large-scale barcoding (megabarcoding) of all specimens from mass samples obtained at biomonitoring sites. The barcodes are then used to group the specimens into molecular operational taxonomic units that are subsequently tested/validated as species with a second data source (e.g. morphology). New species are described using barcodes, images and short diagnoses, and abundance data are collected for both new and described species. The specimen images used for species discovery then become the raw material for training artificial intelligence identification algorithms and collecting trait data such as body size, biomass and feeding modes. Additional trait data can be obtained from vouchers by using genomic tools developed by molecular ecologists. Applying this pipeline to a few samples per site will lead to greatly improved insect monitoring regardless of whether the species composition of a sample is determined with images, metabarcoding or megabarcoding.
This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.
Measuring the state of aquatic environments using eDNA—upscaling spatial resolution of biotic indices
Authors: Blackman Rosetta C. , Carraro Luca , Keck François , Altermatt Florian 
Published: May 2024

Aquatic macroinvertebrates, including many aquatic insect orders, are a diverse and ecologically relevant organismal group yet they are strongly affected by anthropogenic activities. As many of these taxa are highly sensitive to environmental change, they offer a particularly good early warning system for human-induced change, thus leading to their intense monitoring. In aquatic ecosystems there is a plethora of biotic monitoring or biomonitoring approaches, with more than 300 assessment methods reported for freshwater taxa alone. Ultimately, monitoring of aquatic macroinvertebrates is used to calculate ecological indices describing the state of aquatic systems. Many of the methods and indices used are not only hard to compare, but especially difficult to scale in time and space. Novel DNA-based approaches to measure the state and change of aquatic environments now offer unprecedented opportunities, also for possible integration towards commonly applicable indices. Here, we first give a perspective on DNA-based approaches in the monitoring of aquatic organisms, with a focus on aquatic insects, and how to move beyond traditional point-based biotic indices. Second, we demonstrate a proof-of-concept for spatially upscaling ecological indices based on environmental DNA, demonstrating how integration of these novel molecular approaches with hydrological models allows an accurate evaluation at the catchment scale.
This article is part of the theme issue ‘Towards a toolkit for global insect biodiversity monitoring’.