bluuebunny/crossref_metadata_2025_split huggingface dataset:
Amphitropic amphiantarctic disjunctions in Apiaceae subfamily Apioideae
Authors: Spalik Krzysztof , Piwczyński Marcin , Danderson Clark A. , Kurzyna‐Młynik Renata , Bone Tiffany S. , Downie Stephen R. 
Published: June 2010

AbstractAim Four genera of the plant family Apiaceae subfamily Apioideae –Apium,Chaerophyllum,DaucusandLilaeopsis– are characterized by amphitropic and amphiantarctic distribution patterns, and in Australasia the subfamily is also represented by the tribe Aciphylleae. We infer the molecular ages of achieving amphitropic distribution for these lineages, reconstruct the biogeographical histories ofApium,Chaerophyllum,DaucusandLilaeopsis, and identify the sister group of Aciphylleae.Location Worldwide, with an emphasis on South America and Australasia.Methods Divergence times were estimated employing a Bayesian approach (beast) with fossil pollen of basal apioids as calibration points and using a data set of nuclear ribosomal DNA internal transcribed spacer (nrDNA ITS) sequences from 284 accessions of Apioideae. Additionally, maximum‐likelihood analyses were performed for data subsets comprisingApium,DaucusandLilaeopsis. ForChaerophyllum, maximum‐likelihood andbeastanalyses were carried out using combined chloroplast DNA and ITS data. Biogeographical scenarios were inferred usingdivaandlagrange.Results The sister group to Aciphylleae is the Sino‐HimalayanAcronemaclade and the divergence between these two lineages is dated at 34.8 Ma, whereas the radiation of Aciphylleae started 11.0 Ma. A Northern Hemispheric origin was inferred forApium,ChaerophyllumandDaucus, whereasLilaeopsisprobably originated in South America following a dispersal of its ancestor from North America.Chaerophyllum,DaucusandLilaeopsisdispersed to the Southern Hemisphere at 5.3, 7.0 and 27.9 Ma, respectively. ForApium, two dispersals from Europe were inferred: to South America at 6.3 Ma, and to southern Africa at 3.9 Ma. The taxa migrated along the land masses of North and South America (Daucus,Lilaeopsis) and Africa (Apium) or by direct transoceanic dispersals through the Atlantic (Apium) or the Pacific (Chaerophyllum). Within the Southern Hemisphere they dispersed both westwards (Apium,Daucus,Lilaeopsis) and eastwards (Chaerophyllum,Lilaeopsis). ForChaerophyllumandLilaeopsis, subsequent dispersal events to the Northern Hemisphere were also inferred.Main conclusions Similar timing, contrasted with the diversity of migration routes, suggests that the dispersal events of these umbellifer taxa (and many other amphitropic amphiantarctic genera) were facilitated by favourable ecological conditions in the Southern Hemisphere (climatic cooling of the late Palaeogene/early Neogene) rather than by increased dispersal opportunities.
Historical biogeography of cynolebiasine annual killifishes inferred from dispersal–vicariance analysis
Authors: Costa Wilson J. E. M. 
Published: June 2010

AbstractAim  To analyse the biogeographical events responsible for the present distribution of cynolebiasine killifishes (Teleostei: Rivulidae: Cynolebiasini), a diversified and widespread Neotropical group of annual fishes threatened with extinction.Location  South America, focusing on the main river basins draining the Brazilian Shield and adjacent zones.Methods  Phylogenetic analysis of 214 morphological characters of 102 cynolebiasine species using tnt, in conjunction with dispersal–vicariance analysis (diva) based on the distribution of cynolebiasine species among 16 areas of endemism.Results  The basal cynolebiasine node is hypothesized to be derived from an old vicariance event occurring just after the separation of South America from Africa, when the terrains at the passive margin of the South American plate were isolated from the remaining interior areas. This would have been followed by geodispersal events caused by river‐capturing episodes from the adjacent upland river basins to the coastal region. Optimal ancestral reconstructions suggest that the diversification of the tribe Cynolebiasini in north‐eastern South America was first caused by vicariance events in the Paranã–Urucuia–São Francisco area, followed by dispersal from the São Francisco to the Northeastern Brazil area. The latter dispersal event occurred simultaneously in two different cynolebiasine clades, possibly as a result of a temporary connection of the São Francisco area before the uplift of the Borborema Plateau during the Miocene. The diversity of cynolebiasines inhabiting the Paraguay area is hypothesized to be derived from two processes: an older vicariance event (about 30 Ma) separating Paraguay from southern Amazonian areas (Guaporé–Xingu–Araguaia–Tocantins), and a series of more recent dispersal and vicariance events (about 15–11 Ma) caused by successive marine transgressions, which permitted alternating biotic exchange and isolation in the Paraguay, La Plata, Negro and Patos areas.Main conclusions  diva indicates there to have been a series of vicariance events congruent with tectonic episodes in South America, but the present distribution of cynolebiasines has also been shaped by a series of dispersal events. The effects of the combined action of dispersal and vicariance events were more conspicuous in the Eastern Brazil and Paraguay areas, thus generating reticulate biogeographical scenarios.
Sleep quantity, quality and optimism in children
Authors: LEMOLA SAKARI , RÄIKKÖNEN KATRI , SCHEIER MICHAEL F. , MATTHEWS KAREN A. , PESONEN ANU‐KATRIINA , HEINONEN KATI , LAHTI JARI , KOMSI NIINA , PAAVONEN JUULIA E. , KAJANTIE EERO 
Published: June 2010

SummaryWe tested the relationship of objectively measured sleep quantity and quality with positive characteristics of the child. Sleep duration, sleep latency and sleep efficiency were measured by an actigraph for an average of seven (range = 3–14) consecutive nights in 291 8‐year‐old children (standard deviation = 0.3 years). Children’s optimism, self‐esteem and social competence were rated by parents and/or teachers. Sleep duration showed a non‐linear, reverse J‐shaped relationship with optimism (P = 0.02), such that children with sleep duration in the middle of the distribution scored higher in optimism compared with children who slept relatively little. Shorter sleep latency was related to higher optimism (P = 0.01). The associations remained when adjusting for child’s age, sex, body mass index, and parental level of education and optimism. In conclusion, sufficient sleep quantity and good sleep quality are related to children’s positive characteristics. Our findings may inform why sleep quantity and quality and positive characteristics are associated with wellbeing in children.
Conservation genetics, foraging distance and nest density of the scarce Great Yellow Bumblebee (Bombus distinguendus)
Authors: CHARMAN THOMAS G. , SEARS JANE , GREEN RHYS E. , BOURKE ANDREW F. G. 
Published: June 2010

AbstractThe conservation genetics of bees is of particular interest because many bee species are in decline, so jeopardizing the essential ecosystem service of plant pollination that they provide. In addition, as social haplodiploids, inbred bees may be vulnerable to the extra genetic load represented by the production of sterile diploid males. Using microsatellite markers, we investigated the genetic structure of populations of the Great Yellow Bumblebee (Bombus distinguendus Morawitz) in the UK, where this species has undergone a precipitous decline. By means of a mixture of analytical methods and simulation, we also extended—and then applied—genetic methods for estimating foraging distance and nest density in wild bees. B. distinguendus populations were characterized by low expected heterozygosity and allelic richness, inbreeding coefficients not significantly different from zero, absence of detected diploid males, absence of substantial demographic bottlenecking, and population substructuring at large (c. 100+ km) but not small (10s of km) spatial scales. The minimum average effective population size at our sampling sites was low (c. 25). In coastal grassland (machair), the estimated modal foraging distance of workers was 391 m, with 95% of foraging activity occurring within 955 m of the nest, and estimated nest density was 19.3 nests km‐2. These findings show that B. distinguendus exhibits some genetic features of scarce, declining or fragmented populations. Moreover, B. distinguendus workers appear to forage over above‐average distances and nests remain thinly distributed even in current strongholds. These considerations should inform future conservation actions for this and similar species.
Pleistocene climatic cycling drives intra‐specific diversification in the intermediate horseshoe bat (Rhinolophus affinis) in Southern China
Authors: MAO XIU GUANG , ZHU GUANG JIAN , ZHANG SHUYI , ROSSITER STEPHEN J. 
Published: June 2010

AbstractThe repeated formation and loss of land‐bridges during the Pleistocene have had lasting impacts on population genetic structure. In the tropics, where island populations persisted through multiple glacial cycles, alternating periods of isolation and contact are expected to have driven population and taxonomic divergence. Here, we combine mitochondrial and nuclear sequence data with microsatellites to dissect the impact of Pleistocene climate change on intra‐specific diversification in the horseshoe bat Rhinolophus affinis. This taxon shows considerable morphological and acoustic variation: two parapatric subspecies (himalayanus and macrurus) occur on mainland China and a third (hainanus) on Hainan Island. Our phylogeographic reconstruction and coalescent analyses suggest the island subspecies formed from an ancestral population of himalayanus via two colonization events c. 800 000 years before present. R. a. hainanus then recolonized the mainland, forming macrurus and thus a secondary contact zone with himalayanus. Finally, macrurus recolonized Hainan following the LGM. We found that all three biological events corresponded to known periods of land‐bridge formation. Evidence of introgression was detected between macrurus and both its sister taxa, with geographical proximity rather than length of separation appearing to be the biggest determinant of subsequent genetic exchange. Our study highlights the important role of climate‐mediated sea level changes have had in shaping current processes and patterns of population structure and taxonomic diversification.
Structured populations of the oriental fruit moth in an agricultural ecosystem
Authors: TORRIANI MARCO V. G. , MAZZI DOMINIQUE , HEIN SILKE , DORN SILVIA 
Published: June 2010

AbstractIntercontinental trade has led to multiple introductions of invasive pest species at a global scale. Molecular analyses of the structure of populations support the understanding of ecological strategies and evolutionary patterns that promote successful biological invasions. The oriental fruit moth, Grapholita (=Cydia) molesta, is a cosmopolitan and economically destructive pest of stone and pome fruits, expanding its distribution range concomitantly with global climate warming. We used ten newly developed polymorphic microsatellite markers to examine the genetic structure of G. molesta populations in an agricultural ecosystem in the Emilia‐Romagna region of northern Italy. Larvae collected in eight sampling sites were assigned to a mosaic of five populations with significant intra‐regional structure. Inferred measures of gene flow within populations implicated both active dispersal, and passive dispersal associated with accidental anthropogenic displacements. Small effective population sizes, coupled with high inbreeding levels, highlighted the effect of orchard management practices on the observed patterns of genetic variation within the sampling sites. Isolation by distance did not appear to play a major role at the spatial scale considered. Our results provide new insights into the population genetics and dynamics of an invasive pest species at a regional scale.
DNA barcodes show cryptic diversity and a potential physiological basis for host specificity among Diplostomoidea (Platyhelminthes: Digenea) parasitizing freshwater fishes in the St. Lawrence River, Canada
Authors: LOCKE SEAN A. , DANIEL MCLAUGHLIN J. , MARCOGLIESE DAVID J. 
Published: June 2010

AbstractDiplostomoid metacercariae parasitize freshwater fishes worldwide and cannot be identified to species based on morphology. In this study, sequences of the barcode region of cytochromecoxidase subunit 1 (CO1) were used to discriminate species in 1088 diplostomoids, most of which were metacercariae from fish collected in the St. Lawrence River, Canada. Forty‐seven diplostomoid species were detected, representing a large increase in known diversity. Most species suggested by CO1 sequences were supported by sequences of internal transcribed spacer (ITS) of rDNA and host and tissue specificity. Three lines of evidence indicate that physiological incompatibility between host and parasite is a more important determinant of host specificity than ecological separation of hosts and parasites in this important group of freshwater fish pathogens. First, nearly all diplostomoid species residing outside the lens of the eyes of fish are highly host specific, while all species that occur inside the lens are generalists. This can be plausibly explained by a physiological mechanism, namely the lack of an effective immune response in the lens. Second, the distribution of diplostomoid species among fish taxa reflected the phylogenetic relationships of host species rather than their ecological similarities. Third, the same patterns of host specificity were observed in separate, ecologically distinctive fish communities.
Recognizing the temporal distinctions between landscape genetics and phylogeography
Authors: WANG IAN J. 
Published: June 2010

AbstractThe steadily advancing fields of landscape genetics and phylogeography share many goals. However, there are some very distinct differences between these two disciplines, including the kinds of data and analyses commonly used, the timescale over which these data are informative, and the hypotheses the data are used to examine. Recently, a number of studies appear to have confused or synonymized phylogeography and landscape genetics. The difference is not merely semantic; understanding the distinctions between these fields is important for ensuring that researchers are aware of the temporal scale over which their data are informative.
Up, up, and away: relative importance of horizontal and vertical escape from predators for survival and senescence
Authors: MØLLER A. P. 
Published: June 2010

AbstractAnimals fleeing a potential predator can escape horizontally or vertically, although vertical flight is more expensive than horizontal flight. The ability to escape in three dimensions by flying animals has been hypothesized to result in greater survival and eventually slower senescence than in animals only fleeing in two dimensions. In a comparative study of flight initiation distance in 69 species of birds when approached by a human, I found that the amount of variance explained by flight initiation distance was more than four times as large for the horizontal than the vertical component of perch height when taking flight. The slope of the relationship between horizontal distance and flight initiation distance (horizontal slope) increased with increasing body mass across species, whereas the slope of the relationship between vertical distance and flight initiation distance (vertical slope) decreased with increasing body mass. Therefore, there was a negative relationship between horizontal and vertical slope, although this negative relationship was significantly less steep than expected for a perfect trade‐off. The horizontal slope decreased with increasing density of the habitat from grassland over shrub to forest, whereas that was not the case for the vertical slope. Adult survival rate increased and rate of senescence (longevity adjusted for survival rate, body mass and sampling effort) decreased with increasing vertical, but not with horizontal slope, consistent with the prediction that vertical escape indeed provides a means of reducing the impact of predation.
Common garden experiment reveals pathogen isolate but no host genetic diversity effect on the dynamics of an emerging wildlife disease
Authors: HAWLEY D. M. , DHONDT K. V. , DOBSON A. P. , GRODIO J. L. , HOCHACHKA W. M. , LEY D. H. , OSNAS E. E. , SCHAT K. A. , DHONDT A. A. 
Published: June 2010

AbstractHost genetic diversity can mediate pathogen resistance within and among populations. Here we test whether the lower prevalence of Mycoplasmal conjunctivitis in native North American house finch populations results from greater resistance to the causative agent, Mycoplasma gallisepticum (MG), than introduced, recently‐bottlenecked populations that lack genetic diversity. In a common garden experiment, we challenged wild‐caught western (native) and eastern (introduced) North American finches with a representative eastern or western MG isolate. Although introduced finches in our study had lower neutral genetic diversity than native finches, we found no support for a population‐level genetic diversity effect on host resistance. Instead we detected strong support for isolate differences: the MG isolate circulating in western house finch populations produced lower virulence, but higher pathogen loads, in both native and introduced hosts. Our results indicate that contemporary differences in host genetic diversity likely do not explain the lower conjunctivitis prevalence in native house finches, but isolate‐level differences in virulence may play an important role.
Constraints on adaptation: explaining deviation from optimal sex ratio using artificial neural networks
Authors: LEWIS H. M. , TOSH C. R. , O’KEEFE S. , SHUKER D. M. , WEST S. A. , MAYHEW P. J. 
Published: June 2010

AbstractDetermining processes constraining adaptation is a major challenge facing evolutionary biology, and sex allocation has proved a useful model system for exploring different constraints. We investigate the evolution of suboptimal sex allocation in a solitary parasitoid wasp system by modelling information acquisition and processing using artificial neural networks (ANNs) evolving according to a genetic algorithm. Theory predicts an instantaneous switch from the production of male to female offspring with increasing host size, whereas data show gradual changes. We found that simple ANNs evolved towards producing sharp switches in sex ratio, but additional biologically reasonable assumptions of costs of synapse maintenance, and simplification of the ANNs, led to more gradual adjustment. Switch sharpness was robust to uncertainty in fitness consequences of host size, challenging interpretations of previous empirical findings. Our results also question some intuitive hypotheses concerning the evolution of threshold traits and confirm how neural processing may constrain adaptive behaviour.
Natalizumab induces a rapid improvement of disability status and ambulation after failure of previous therapy in relapsing‐remitting multiple sclerosis
Authors: Belachew S. , Phan‐Ba R. , Bartholomé E. , Delvaux V. , Hansen I. , Calay P. , Hafsi K. E. , Moonen G. , Tshibanda L. , Vokaer M. 
Published: June 2010

Background:  Natalizumab (Tysabri) is a monoclonal antibody that was recently approved for the treatment of relapsing‐remitting multiple sclerosis (RRMS). Our primary objective was to analyse the efficacy of natalizumab on disability status and ambulation after switching patients with RRMS from other disease‐modifying treatments (DMTs).Methods:  A retrospective, observational study was carried out. All patients (n = 45) initiated natalizumab after experiencing at least 1 relapse in the previous year under interferon‐beta (IFNB) or glatiramer acetate (GA) treatments. The patients also had at least 1 gadolinium‐enhancing (Gd+) lesion on their baseline brain MRI. Expanded Disability Status Scale (EDSS) scores, and performance on the Timed 25‐Foot Walk Test and on the Timed 100‐Metre Walk Test were prospectively collected every 4 weeks during 44 weeks of natalizumab treatment. Brain MRI scans were performed after 20 and 44 weeks of treatment.Results:  Sixty‐two per cent of patients showed no clinical and no radiological signs of disease activity, and 29% showed a rapid and confirmed EDSS improvement over 44 weeks of natalizumab therapy. Patients with improvement on the EDSS showed similar levels of baseline EDSS and active T1 lesions, but had a significantly higher number of relapses, and 92% of them had experienced relapse‐mediated sustained EDSS worsening in the previous year. A clinically meaningful improvement in ambulation speed was observed in approximately 30% of patients.Conclusions:  These results indicate that natalizumab silences disease activity and rapidly improves disability status and walking performance, possibly through delayed relapse recovery in patients with RRMS who had shown a high level of disease activity under other DMTs.
A Validation Study of Type 2 Diabetes‐related Variants of the TCF7L2, HHEX, KCNJ11, and ADIPOQ Genes in one Endogamous Ethnic Group of North India
Authors: Gupta Vipin , Khadgawat Rajesh , NG Hon Keung Tony , Kumar Satish , Aggarwal Ajay , Rao Vadlamudi Raghavendra , Sachdeva M. P. 
Published: June 2010

SummaryThe aim of this study was to validate the single nucleotide polymorphisms (SNPs) of four candidate genes (TCF7L2, HHEX, KCNJ11, and ADIPOQ) related to type 2 diabetes (T2D) in an endogamous population of north India; the Aggarwal population, having 18‐clans. This endogamous population model was heavily supported by recent land mark work and we also verified the homogeneity of this population by clan‐based stratification analysis. Two SNPs (rs4506565; rs7903146) in TCF7L2 were found to be significant (p‐value = 0.00191; p‐value = 0.00179, respectively), and odds ratios of 2.1 (dominant‐model) and 2.0 (recessive‐model) respectively, were obtained for this population. The TTT haplotype in the TCF7L2 gene was significantly associated with T2D. Waist‐Hip ratio (WHR), systolic blood pressure (SBP), and age were significant covariates for increasing risk of T2D. Single‐SNP, combined‐SNPs and haplotype analysis provides clear evidence that the causal mutation is near to or within the significant haplotype (TTT) of the TCF7L2 gene. In spite of a culturally‐learned sedentary lifestyle and fat‐enriched dietary habits, WHR rather than body‐mass‐index emerged as a robust predictor of risk for T2D in this population.
Genetic Diversity of the Fragile X Syndrome Gene (FMR1) in a Large Sub‐Saharan West African Population
Authors: Peprah Emmanuel K. , Allen Emily G. , Williams Scott M. , Woodard Laresa M. , Sherman Stephanie L. 
Published: June 2010

SummaryFragile X syndrome (OMIM #300624) is caused by the expansion of a CGG trinucleotide repeat found in the 5′ untranslated region of the X‐linked FMR1 gene. Although examinations of characteristics associated with repeat instability and expansion of the CGG repeat upon transmission from parent to offspring has occurred in various world populations, none has been conducted in large Sub‐Saharan African populations. We have examined the FMR1 CGG repeat structure in a sample of 350 males drawn from the general population of Ghana. We found that Ghanaians and African Americans have similar allele frequency distributions of CGG repeat and its flanking STR markers, DXS548 and FRAXAC1. However, the distribution of the more complex marker, FRAXAC2, is significantly different. The haplotype structure of the FMR1 locus indicated that Ghanaians share several haplotypes with African Americans and Caucasians that are associated with the expanded full mutation. In Ghanaians, the majority of repeat structures contained two AGG interruptions, however, the majority of intermediate alleles (35–49) lacked AGG interruptions. Overall, we demonstrate that allelic diversity of the FMR1 locus among Ghanaians is comparable to African Americans, but includes a minority of CGG array structures not found in other populations.