bluuebunny/crossref_metadata_2025_split huggingface dataset:
Use it or lose it: measuring trends in wild species subject to substantial use
Authors: Tierney Megan , Almond Rosamunde , Stanwell-Smith Damon , McRae Louise , Zöckler Christoph , Collen Ben , Walpole Matt , Hutton Jon , de Bie Steven 
Published: March 2014

AbstractThe unsustainable use of wild animals and plants is thought to be a significant driver of biodiversity loss in many regions of the world. The international community has therefore called for action to ensure the sustainable use of living resources and safeguard them for future generations. Indicators that can track changes in populations of species used by humans are essential tools for measuring progress towards these ideals and informing management decisions. Here we present two indicators that could be used to track changes in populations of utilized vertebrate species and levels of harvest sustainability. Preliminary results based on sample data both at the global level and for the Arctic show that utilized species are faring better than other species overall. This could be a consequence of better management of these populations, as indicated by more sustainable harvest levels in recent decades. Limitations of the indicators are still apparent; in particular, there is a lack of data on harvested populations of some vertebrate classes and from certain regions. Focusing monitoring efforts on broadening the scope of data collected and identifying interactions with other potential drivers of decline will strengthen these indicators as policy tools and improve their potential to be incorporated into future sets of indicators to track progress towards global biodiversity targets.
Distributed control strategy for flexible link manipulators
Authors: Fareh Raouf , Saad Mohamad , Saad Maarouf 
Published: March 2014

SUMMARYThis paper presents a nonlinear distributed control strategy for flexible-link manipulators to solve the tracking control problem in the joint space and cancel vibrations of the links. First, the dynamic of an n-flexible-link manipulator is decomposed into n subsystems. Each subsystem has a pair of one joint and one link. The distributed control strategy is applied to each subsystem starting from the last subsystem. The strategy of control consists in controlling the nth joint and stabilizing the nth link by assuming that the remaining subsystems are stable. Then, going backward to the (n − 1)th subsystem, the same control strategy is applied to each corresponding joint-link subsystem until the first. Sliding mode technique is used to develop the control law of each subsystem and the global stability of the resulting tracking errors is proved using the Lyapunov technique. This algorithm was tested on a two-flexible-link manipulator and gave effective results, a good tracking performance, and capability to eliminate the links' vibrations.
Adaptive Measurement Model of Navigation by Stellar Refraction based on Multiple Models Switching
Authors: Yang Bo , Si Fan , Xu Fan , Zhou Wenlan 
Published: March 2014

In recent years, navigation by stellar refraction has received considerable attention, having advantages of high accuracy, simple construction, and low cost. Nevertheless, there are many limitations to the precision and application of this method using a traditional measurement model. This article studies the changing pattern of atmospheric density, the disturbed atmospheric density model and measurement model of stellar refraction ranging from 20 km to 50 km. Furthermore, a control algorithm of multiple mode switching and an adaptive measurement model are proposed. With this method, any refracted starlight from the scope of between 20 km and 50 km can be captured and the measurement model at the appropriate height can be automatically established. Due to this, the reliability and practicality of navigation have been raised considerably. Accuracy of navigation using the adaptive measurement method is observed to improve by about 14%, using computer simulation based on an Unscented Kalman Filter (UKF).
Visualization of Microbiological Processes Underlying Stress Relaxation inPseudomonas aeruginosaBiofilms
Authors: Peterson Brandon W. , Busscher Henk J. , Sharma Prashant K. , van der Mei Henny C. 
Published: March 2014

AbstractBacterial biofilms relieve themselves from external stresses through internal rearrangement, as mathematically modeled in many studies, but never microscopically visualized for their underlying microbiological processes. The aim of this study was to visualize rearrangement processes occurring in mechanically deformed biofilms using confocal-laser-scanning-microscopy after SYTO9 (green-fluorescent) and calcofluor-white (blue-fluorescent) staining to visualize bacteria and extracellular-polymeric matrix substances, respectively. We apply 20% uniaxial deformation toPseudomonas aeruginosabiofilms and fix deformed biofilms prior to staining, after allowing different time-periods for relaxation. Two isogenicP. aeruginosastrains with different abilities to produce extracellular polymeric substances (EPS) were used. By confocal-laser-scanning-microscopy all biofilms showed intensity distributions for fluorescence from which rearrangement of EPS and bacteria in deformed biofilms were derived. For theP. aeruginosastrain producing EPS, bacteria could not find new, stable positions within 100 s after deformation, while EPS moved toward deeper layers within 20 s. Bacterial rearrangement was not seen inP. aeruginosabiofilms deficient in production of EPS. Thus, EPS is required to stimulate bacterial rearrangement in mechanically deformed biofilms within the time-scale of our experiments, and the mere presence of water is insufficient to induce bacterial movement, likely due to its looser association with the bacteria.
Early integration of palliative care in hospitals: A systematic review on methods, barriers, and outcome
Authors: Dalgaard Karen Marie , Bergenholtz Heidi , Nielsen Marianne Espenhain , Timm Helle 
Published: March 2014

AbstractObjective:According to the World Health Organization (WHO), palliative care (PC) should be available to everyone suffering from life-threatening diseases and should be started early on in the illness trajectory. However, PC is often initiated much later and is restricted to cancer patients. There is a need for more knowledge about how early PC can be implemented in clinical practice. The purpose of our study was to document the best evidence on methods for early identification (EI) of palliative trajectories in cancer, chronic heart failure (CHF), and chronic obstructive pulmonary disease (COPD) populations, and to identify preconditions for early integration of general PC in hospitals and outcomes for patients and relatives.Method:A comprehensive systematic review of methods, preconditions, and outcomes was conducted via an electronic literature search of publications between 2002 and September 2012. A final sample of 44 papers was reviewed in detail.Results:Our study identified disease-specific and general methods for EI of patients who might benefit from PC. Prognostication of end-stage disease based on (holistic) clinical judgment, prognostic factors, and/or care needs are the most frequently recommended methods. A number of interacting disease-, staff-, user-, and organization-specific barriers need to be overcome in order to implement early integration of PC in clinical practice. Early integration of PC may lead to better symptom management, prolonged survival, and better quality of life.Significance of Results:No methods can be recommended for routine clinical practice without further validation. There is an urgent need to develop and evaluate methods based on the holistic assessment of symptoms or needs. The barriers to early integration of PC are most extensive with regard to CHF and COPD. Professional training and education are recommended to facilitate early implementation of PC. The evidence about outcome is sparse and mostly relates to cancer populations receiving specialized PC.
Psychologists involved in cancer palliative care in Japan: A nationwide survey
Authors: Nakajima Kasumi , Iwamitsu Yumi , Matsubara Mei , Oba Akira , Hirai Kei , Morita Tatsuya , Kizawa Yoshiyuki 
Published: March 2014

AbstractObjective:The aim of this study was to clarify, using a nationwide survey, what is perceived as necessary knowledge and skills for psychologists involved in cancer palliative care in Japan, the expectations of medical staff members, and the degree to which these expectations are met.Method:We conducted a questionnaire survey of psychologists involved in cancer palliative care. A total of 419 psychologists from 403 facilities were asked to fill out the questionnaire and return it anonymously. Some 401 psychologists (89 males, 310 females, and 2 unspecified; mean age, 37.2 ± 9.5 years) responded about necessary knowledge and skills for psychologists working in cancer palliative care, the necessity for training, expectations at their current workplace, and the degree to which expectations are met.Results:More than 90% of participants responded that many kinds of knowledge and skills related to the field of cancer palliative care are necessary. Over 80% of participants indicated a necessity for training related to these knowledge and skills. Although more than 50% (range, 50.1–85.8%) of participants responded that such services as “cooperation with medical staff within a hospital,” “handling patients for whom psychological support would be beneficial,” and “assessment of patients' mental state” were expected at their workplace, fewer than 60% (31.4–56.9%) responded that they actually performed these roles.Significance of Results:Our results show that many psychologists in cancer palliative care feel unable to respond to the expectations at their current workplace and that they require more adequate knowledge and skills related to cancer palliative care to work effectively. No other nationwide surveys have generated this type of information in Japan, so we believe that the results of our study are uniquely important.
Investigation of the microbial metabolism of carbon dioxide and hydrogen in the kangaroo foregut by stable isotope probing
Authors: Godwin Scott , Kang Alicia , Gulino Lisa-Maree , Manefield Mike , Gutierrez-Zamora Maria-Luisa , Kienzle Marco , Ouwerkerk Diane , Dawson Kerri , Klieve Athol V 
Published: March 2014

Abstract
Kangaroos ferment forage material in an enlarged forestomach analogous to the rumen, but in contrast to ruminants, they produce little or no methane. The objective of this study was to identify the dominant organisms and pathways involved in hydrogenotrophy in the kangaroo forestomach, with the broader aim of understanding how these processes are able to predominate over methanogenesis. Stable isotope analysis of fermentation end products and RNA stable isotope probing (RNA-SIP) were used to investigate the organisms and biochemical pathways involved in the metabolism of hydrogen and carbon dioxide in the kangaroo forestomach. Our results clearly demonstrate that the activity of bacterial reductive acetogens is a key factor in the reduced methane output of kangaroos. In in vitro fermentations, the microbial community of the kangaroo foregut produced very little methane, but produced a significantly greater proportion of acetate derived from carbon dioxide than the microbial community of the bovine rumen. A bacterial operational taxonomic unit closely related to the known reductive acetogen Blautia coccoides was found to be associated with carbon dioxide and hydrogen metabolism in the kangaroo foregut. Other bacterial taxa including members of the genera Prevotella, Oscillibacter and Streptococcus that have not previously been reported as containing hydrogenotrophic organisms were also significantly associated with metabolism of hydrogen and carbon dioxide in the kangaroo forestomach.
Immunophilin FKBP52 induces Tau-P301L filamentous assembly in vitro and modulates its activity in a model of tauopathy
Authors: Giustiniani Julien , Chambraud Béatrice , Sardin Elodie , Dounane Omar , Guillemeau Kevin , Nakatani Hiroko , Paquet Dominik , Kamah Amina , Landrieu Isabelle , Lippens Guy , Baulieu Etienne-Emile , Tawk Marcel 
Published: March 2014

Significance
Growing evidence underlines the role attributed to abnormal forms of Tau in several neurodegenerative diseases known as tauopathies, including Alzheimer’s disease, which are characterized by accumulation of oligomers and filamentous Tau inclusions in the CNS. We identify a direct interaction of the immunophilin FK506-binding protein with a molecular mass of ∼52 kDa (FKBP52) and the pathological mutant of Tau containing a proline-to-leucine mutation at position 301 (Tau-P301L), inducing Tau-P301L oligomerization and assembly into filaments. This interaction has a considerable impact on the progress of the tauopathy because some early aspects of the disease are rescued, in vivo, by knocking down FKBP52. Our results open a new field for the study of FKBP52 pathophysiology in tauopathic dementias, including prediction of disease phenotype and search for new types of antipathological Tau treatments.
Physical, Chemical, and Sensory Properties of Antioxidant‐Enriched Raw and Cooked Rice by Vacuum‐Drying Impregnation in a Semidry State
Authors: Lee Seung Ju , Boonsupthip Waraporn 
Published: March 2014

ABSTRACTVacuum drying was employed with a vacuum impregnation technique in a semidry state to enrich rice with antioxidants of beetroot juice. The properties of the vacuum‐dried raw and cooked rice grains were characterized. The various raw rice grains (three varieties and two storage time periods) exhibited a significant absorption of beetroot juice, which was evident from the red‐violet beetroot color of the rice, as distinguished from the white color of the control. The color increase (ΔE= 20−40) was linear with the juice content (R2 = 0.96−0.99). Their total phenolic (TP) contents and 2,2‐diphenyl‐2‐picrylhydrazyl radical (DPPH) scavenging activities were enhanced (ΔTP = 21−260 mg of gallic acid equivalents/100 g of rice db and ΔDPPH = 22−64 mg of vitamin C equivalents/100 g of rice db). Their grain integrity was reduced (Δforce = −1 to −63), which was potentially associated with the formation of grain surface cracks (linear relationship of %crack and %juice with R2 = 0.94−0.98). After cooking, the enriched rice grains were linearly elongated with added juice (R2 = 0.88−0.97, up to 1.6‐, 2.0‐, and 2.0‐fold for Sanpatong 1, Khao Dawk Mali 105, and Chainart 1 rice samples, respectively), and the overall volume of the cooked rice was increased (likely not linear, up to 3.2‐, 4.3‐, and 4.8‐fold for Sanpatong 1, Khao Dawk Mali 105, and Chainart 1 rice samples, respectively). Such improvements in cooking qualities were obtained by this simple vacuum‐drying technique, in comparison to existing rice‐aging processes that are more time consuming. The sensorial scores of the resultant rice products were excellent. Vacuum drying is an effective tool to improve the antioxidant value of rice as well as its cooking quality, and the raw quality remains appreciable. It is a simple and rapid process that could be practical for manufacturing healthy rice products.
First Report of Bean common mosaic virus Infecting Azuki Bean (Vigna angularis) in China
Authors: Li Y. Q. , Liu Z. P. , Yang K. , Li Y. S. , Zhao B. , Fan Z. F. , Wan P. 
Published: March 2014

Azuki bean (Vigna angularis Ohwi & Ohashi) is one of the traditional grain legumes in China. From 2010 to 2013, mosaic and crumpling symptoms on leaves and stunting, all typical symptoms of a viral disease, were observed on cultivars CWA030, CWA221, and JCA002 of azuki bean with incidence rates of 30 to 100% and yield losses of 50 to 95% in the three fields of Changping district, Beijing. To identify the possible viral pathogen(s), 21 symptomatic leaf samples from different cultivars were collected and total RNA was extracted from the samples and subjected to RT-PCR testing with degenerate primers targeting portions of the coding regions of Cucumovirus capsid protein (CP) (1) and Potyvirus NIb (2); these viruses had been reported in azuki bean. Fragments of 940 bp and 350 bp corresponding to Cucumovirus CP and Potyvirus NIb, respectively, were amplified from all the samples collected. Sequencing of the PCR products from nine samples, followed by BLAST analysis, confirmed the presence of Cucumber mosaic virus (CMV) and Bean common mosaic virus (BCMV). All the samples tested were also positive with direct antigen coating (DAC)-ELISA using specific antiserum to CMV or BCMV (Agdia, Elkhart, IN). The CMV CP gene (GenBank Accession No. KJ467817) shared 99% sequence identity with a China CMV isolate (DQ873558). To further characterize the BCMV strain found, fragments of 3,388 bp spanning BCMV NIa, NIb, CP and 3′UTR regions were amplified with another primer set, BCMV-F (5′-AGCAAGTCAATTTACAAGGGACTTC-3′) and BCMV-R (5′-GGAACAACAAACATTGCCGTAGCTAC-3′) from three samples, and three independent clones from each sample were sequenced. Sequence analysis revealed that this segment (KJ467816) shared 98% identity with the BCMV azuki bean strain (U60100). To the best of our knowledge, this is the first report of BCMV, together with CMV, naturally infecting azuki bean in China. Further attention should be paid to this emerging viral disease and measures should be taken to control the spread of BCMV. References: (1) S. K. Choi et al. J. Virol. Methods 83:1345, 1999. (2) L. Zheng et al. Plant Pathol. 59:1345, 2010.
First Report of Cucumber mosaic virus Associated with Capsicum chinense var. Scotch Bonnet in Florida
Authors: Babu B. , Dankers H. , Paret M. L. 
Published: March 2014

Scotch bonnet (Capsicum chinense) is a tropical hot pepper variety that is grown in South America, the Caribbean Islands, and in Florida, and is an important cash crop. In Florida, scotch bonnet is grown on ~100 acres annually. Virus-like leaf symptoms including mosaic and yellow mottling were observed on scotch bonnet plants in a field at Quincy, FL, with a disease incidence of ~5%. Two symptomatic and one non-symptomatic plant sample were collected from this field for identification of the causal agent associated with the symptoms. Viral inclusion assays (2) of the epidermal tissues of the symptomatic scotch bonnet samples using Azure A stain indicated the presence of spherical aggregates of crystalline inclusion bodies. Testing of the symptomatic samples using lateral flow immunoassays (Immunostrips, Agdia, Elkhart, IN) specific to Cucumber mosaic virus (CMV), Potato virus Y (PVY), Pepper mild mottle virus (PMMoV), Tobacco mosaic virus (TMV), Zucchini yellow mosaic virus (ZYMV), and Papaya ringspot virus (PRSV), showed a positive reaction only to CMV. The sap from an infected leaf sample ground in 0.01 M Sorensons phosphate buffer (pH 7.0) was used to mechanically inoculate one healthy scotch bonnet plant (tested negative for CMV with Immunostrip) at the 2- to 3-leaf stage. The inoculated plant developed mild mosaic and mottling symptoms 12 to 14 days post inoculation. The presence of CMV in the mechanically inoculated plant was further verified using CMV Immunostrips. Total RNA was extracted (RNeasy Plant Mini Kit, Qiagen, Valencia, CA) from the previously collected two symptomatic and one non-symptomatic scotch bonnet samples. The samples were subjected to reverse-transcription (RT)-PCR assays using SuperScript III One-Step RT-PCR System (Invitrogen, Life Technologies, Grand Island, NY), and using multiplex RT-PCR primer sets (1). The primers were designed to differentiate the CMV subgroup I and II, targeting the partial coat protein gene and the 3′UTR. The RT-PCR assays using the multiplex primers produced an amplicon of 590 bp, with the CMV subgroup I primers. The RT-PCR product was only amplified from the symptomatic leaf samples. The obtained amplicons were gel eluted, and directly sequenced bi-directionally (GenBank Accession Nos. KF805389 and KF805390). BLAST analysis of these sequences showed 97 to 98% nucleotide identities with the CMV isolates in the NCBI database. The isolates collected in Florida exhibited highest identity (98%) with the CMV isolate from tomato (DQ302718). These results revealed the association of CMV subgroup I with symptomatic scotch bonnet leaf samples. Although CMV has been reported from scotch bonnet, this is the first report of its occurrence in Florida. References: (1) S. Chen et al. Acta Biochim Biophys Sin. 43:465, 2011. (2) R. G. Christie and J. R. Edwardson. Plant Dis. 70:273, 1986.
High-Efficiency Stable Transformation of the Model Fern Species Ceratopteris richardii via Microparticle Bombardment
Authors: Plackett Andrew R.G. , Huang Liandong , Sanders Heather L. , Langdale Jane A. 
Published: March 2014

Abstract
Ferns represent the most closely related extant lineage to seed plants. The aquatic fern Ceratopteris richardii has been subject to research for a considerable period of time, but analyses of the genetic programs underpinning developmental processes have been hampered by a large genome size, a lack of available mutants, and an inability to create stable transgenic lines. In this paper, we report a protocol for efficient stable genetic transformation of C. richardii and a closely related species Ceratopteris thalictroides using microparticle bombardment. Indeterminate callus was generated and maintained from the sporophytes of both species using cytokinin treatment. In proof-of-principle experiments, a 35S::β-glucuronidase (GUS) expression cassette was introduced into callus cells via tungsten microparticles, and stable transformants were selected via a linked hygromycin B resistance marker. The presence of the transgene in regenerated plants and in subsequent generations was validated using DNA-blot analysis, reverse transcription-polymerase chain reaction, and GUS staining. GUS staining patterns in most vegetative tissues corresponded with constitutive gene expression. The protocol described in this paper yields transformation efficiencies far greater than those previously published and represents a significant step toward the establishment of a tractable fern genetic model.