bluuebunny/crossref_metadata_2025_split huggingface dataset:
Pectin-like heteroxylans in the early-diverging charophyte Klebsormidium fluitans
Authors: Rapin Marie N , Bothwell John H , Fry Stephen C 
Published: August 2024

Abstract

Background and Aims
The cell walls of charophytic algae both resemble and differ from those of land plants. Cell walls in early-diverging charophytes (e.g. Klebsormidiophyceae) are particularly distinctive in ways that might enable survival in environments that are incompatible with land-plant polymers. This study therefore investigates the structure of Klebsormidium polysaccharides.

Methods
The ‘pectin’ fraction (defined by extractability) of Klebsormidium fluitans, solubilized by various buffers from alcohol-insoluble residues, was digested with several treatments that (partly) hydrolyse land-plant cell-wall polysaccharides. Products were analysed by gel-permeation and thin-layer chromatography.

Key Results
The Klebsormidium pectic fraction made up ~30–50 % of its alcohol-insoluble residue, was optimally solubilized at pH 3–4 at 100 °C, and contained residues of xylose ≈ galactose &gt; rhamnose &gt; arabinose, fucose, mannose and glucose. Uronic acids were undetectable, and the pectic fraction was more readily solubilized by formate than by oxalate, suggesting a lack of chelation. Some land-plant-targeting hydrolases degraded the Klebsormidium pectic fraction: digestion by α-l-arabinanase, endo-β-(1→4)-d-xylanase and α-d-galactosidase suggests the presence of β-(1→4)-xylan with terminal α-l-arabinose, α-d-galactose and (unexpectedly) rhamnose. ‘Driselase’ released oligosaccharides of xylose and rhamnose (~1:1), and graded acid hydrolysis of these oligosaccharides indicated a ‘rhamnoxylan’ with rhamnose side-chains. Partial acid hydrolysis of Klebsormidium pectic fraction released rhamnose plus numerous oligosaccharides, one of which comprised xylose and galactose (~1:2 Gal/Xyl), suggesting a galactoxylan. Lichenase was ineffective, as were endo-β-(1→4)-d-galactanase, endo-β-(1→4)-d-mannanase, β-d-xylosidase and β-d-galactosidase.

Conclusions
Klebsormidium pectic fraction possesses many land-plant-like linkages but is unusual in lacking uronic acid residues and in containing rhamnoxylan and galactoxylan domains. Uronic acids allow land-plant and late-diverging charophyte pectins to form Ca2+-bridges, facilitating cell-wall polymer association; their absence from Klebsormidium suggests that neutral heteroxylans rely on alternative cross-linking mechanisms. This lack of dependence on Ca2+-bridges might confer on Klebsormidium the ability to grow in the acidic, metal-rich environments that it tolerates.
Detecting microsatellite instability by length comparison of microsatellites in the 3′ untranslated region with RNA-seq
Authors: Choi Jin-Wook , Lee Jin-Ok , Lee Sejoon 
Published: August 2024

Abstract
Microsatellite instability (MSI), a phenomenon caused by deoxyribonucleic acid (DNA) mismatch repair system deficiencies, is an important biomarker in cancer research and clinical diagnostics. MSI detection often involves next-generation sequencing data, with many studies focusing on DNA. Here, we introduce a novel approach by measuring microsatellite lengths directly from ribonucleic acid sequencing (RNA-seq) data and comparing its distribution to detect MSI. Our findings reveal distinct instability patterns between MSI-high (MSI-H) and microsatellite stable samples, indicating the efficacy of RNA–based MSI detection. Additionally, microsatellites in the 3′-untranslated regions showed the greatest predictive value for MSI detection. Notably, this efficacy extends to detecting MSI-H samples even in tumors not commonly associated with MSI. Our approach highlights the utility of RNA-seq data in MSI detection, facilitating more precise diagnostics through the integration of various biological data.
937 Case Report of Significant Epistaxis During Third Trimester Pregnancy
Authors: Cotter A , Shuttleworth R , O’Kane A 
Published: August 2024

Abstract

Background
Epistaxis is a common presentation to emergency departments. In cases of severe bleeding in the context of pregnancy cases can become very difficult to manage and normal haemostatic interventions may not prove as effective compared to the non-pregnant patients.

Case Presentation
36-year-old female 30 weeks pregnant presenting with significant potentially fatal epistaxis refractory to several haemostatic measures including floseal, nasal packing, surgical and radiological interventions. Despite two surgeries (involving arterial cautery) requiring general anaesthetic and one embolisation procedure in the interventional radiology suite, bleeding was never fully controlled for prolonged periods. Ultimately, delivery of the baby via caesarean-section was the only method that proved successful in halting the patient’s epistaxis.

Conclusions
This challenging case highlighted the necessity of employing a stepwise approach to managing epistaxis in the context of pregnancy. Furthermore, it emphasizes the need for early consultation with obstetric colleagues and the overall advantages of a acquiring multi-disciplinary input these unique cases.
Identification of A0 minimum ablative margins for colorectal liver metastases: multicentre, retrospective study using deformable CT registration and artificial intelligence-based autosegmentation
Authors: Paolucci Iwan , Albuquerque Marques Silva Jessica , Lin Yuan-Mao , Laimer Gregor , Cignini Valentina , Menchini Francesca , Meira Marcio , Shieh Alexander , O’Connor Caleb , Jones Kyle A , Gazzera Carlo , Fonio Paolo , Brock Kristy K , Calandri Marco , Menezes Marcos , Bale Reto , Odisio Bruno C 
Published: August 2024

Abstract

Background
Several ablation confirmation software methods for minimum ablative margin assessment have recently been developed to improve local outcomes for patients undergoing thermal ablation of colorectal liver metastases. Previous assessments were limited to single institutions mostly at the place of development. The aim of this study was to validate the previously identified 5 mm minimum ablative margin (A0) using autosegmentation and biomechanical deformable image registration in a multi-institutional setting.

Methods
This was a multicentre, retrospective study including patients with colorectal liver metastases undergoing CT- or ultrasound-guided microwave or radiofrequency ablation during 2009–2022, reporting 3-year local disease progression (residual unablated tumour or local tumour progression) rates by minimum ablative margin across all institutions and identifying an intraprocedural contrast-enhanced CT-based minimum ablative margin associated with a 3-year local disease progression rate of less than 1%.

Results
A total of 400 ablated colorectal liver metastases (median diameter of 1.5 cm) in 243 patients (145 men; median age of 62 [interquartile range 54–70] years) were evaluated, with a median follow-up of 26 (interquartile range 17–40) months. A total of 119 (48.9%) patients with 186 (46.5%) colorectal liver metastases were from international institutions B, C, and D that were not involved in the software development. Three-year local disease progression rates for 0 mm, &gt;0 and &lt;5 mm, and 5 mm or larger minimum ablative margins were 79%, 15%, and 0% respectively for institution A (where the software was developed) and 34%, 19%, and 2% respectively for institutions B, C, and D combined. Local disease progression risk decreased to less than 1% with an intraprocedurally confirmed minimum ablative margin greater than 4.6 mm.

Conclusion
A minimum ablative margin of 5 mm or larger demonstrates optimal local oncological outcomes. It is proposed that an intraprocedural minimum ablative margin of 5 mm or larger, confirmed using biomechanical deformable image registration, serves as the A0 for colorectal liver metastasis thermal ablation.
Myocardial ischaemic syndromes: a new nomenclature to harmonize evolving international clinical practice guidelines
Authors: Boden William E , De Caterina Raffaele , Kaski Juan Carlos , Bairey Merz Noel , Berry Colin , Marzilli Mario , Pepine Carl J , Barbato Emanuele , Stefanini Giulio , Prescott Eva , Steg Philippe Gabriel , Bhatt Deepak L , Hill Joseph A , Crea Filippo 
Published: August 2024

Abstract
Since the 1960s, cardiologists have adopted several binary classification systems for acute myocardial infarction (MI) that facilitated improved patient management. Conversely, for chronic stable manifestations of myocardial ischaemia, various classifications have emerged over time, often with conflicting terminology—e.g. ‘stable coronary artery disease’ (CAD), ‘stable ischaemic heart disease’, and ‘chronic coronary syndromes’ (CCS). While the 2019 European guidelines introduced CCS to impart symmetry with ‘acute coronary syndromes’ (ACS), the 2023 American guidelines endorsed the alternative term ‘chronic coronary disease’. An unintended consequence of these competing classifications is perpetuation of the restrictive terms ‘coronary’ and ‘disease’, often connoting only a singular obstructive CAD mechanism. It is now important to advance a more broadly inclusive terminology for both obstructive and non-obstructive causes of angina and myocardial ischaemia that fosters conceptual clarity and unifies dyssynchronous nomenclatures across guidelines. We, therefore, propose a new binary classification of ‘acute myocardial ischaemic syndromes’ and ‘non-acute myocardial ischaemic syndromes’, which comprises both obstructive epicardial and non-obstructive pathogenetic mechanisms, including microvascular dysfunction, vasospastic disorders, and non-coronary causes. We herein retain accepted categories of ACS, ST-segment elevation MI, and non-ST-segment elevation MI, as important subsets for which revascularization is of proven clinical benefit, as well as new terms like ischaemia and MI with non-obstructive coronary arteries. Overall, such a more encompassing nomenclature better aligns, unifies, and harmonizes different pathophysiologic causes of myocardial ischaemia and should result in more refined diagnostic and therapeutic approaches targeted to the multiple pathobiological precipitants of angina pectoris, ischaemia and infarction.
Pairwise synchronization of second-order matrix-weighted networks
Authors: Lv Pengchao , Liu Bo , Huang Junjie 
Published: August 2024

Abstract
This paper deals with the pairwise synchronization of second-order linear time invariant (LTI) systems with incommensurable outputs through a matrix-weighted graph. The pairwise synchronization here means that the relative outputs have pairwise synchronized solutions for the identical LTI systems. For the matrix-weighted network, some necessary and sufficient conditions on the pairwise synchronization are given by means of the Jordan form, matrix decomposition and effective conductance. Moreover, the relationship between the global synchronization and the connectivity of its interconnection graph is also discussed. Examples and simulations are shown to verify the theoretical results.
Radial Sclerosing Lesion (Radial Scar): Radiologic-Pathologic Correlation
Authors: Yan Pamela , Bean Gregory , Bao Jean , Dashevsky Brittany Z 
Published: August 2024

Abstract
Radial sclerosing lesions (RS, also referred to as “radial scars”) and complex sclerosing lesions (CSL) are uncommon breast lesions often grouped together as a single entity in practice. RS/CSL have an incidence of &lt;0.1% to 1% at core needle biopsy (CNB). When detected on CNB, imaging and pathology features must be carefully evaluated to determine appropriate surgical management or imaging follow-up due to potential for malignant upgrade at surgery. Detection of RS/CSL has increased with the advent of tomosynthesis, in which an RS/CSL is typically detected as architectural distortion with or without associated mass with spiculated margins. On US, an RS/CSL is most often occult or manifests as subtle distortion with adjacent cysts. Imaging findings cannot distinguish benign RS/CSL from those upgraded to malignancy at surgery, although larger lesion size may be associated with higher upgrade rates. Histologically, an RS has a central fibroelastotic nidus with entrapped-appearing ducts and proliferative changes at the periphery appearing to radiate from the center; CSL are larger than RS, more disorganized, and typically include multiple patterns of epithelial proliferations, including sclerosing adenosis, sclerosing papillomas, usual ductal hyperplasia, and cysts. RS/CSL with associated atypia at CNB have a 16%to 29% rate of upgrade to malignancy on surgical excision, thus rendering surgical excision essential. Conversely, an RS/CSL without associated atypia, particularly when ≤1 cm in size, has &lt;3% rate of upgrade to malignancy at surgery, allowing consideration of imaging follow-up in lieu of excision. Here, we review recent literature as well as radiology and pathology findings of RS/CSL.
Obesity alters the macrophages’ response to Leishmania major in C57BL/6 mice
Authors: Martins Vinicius Dantas , Vaz Leonardo , Barbosa Sara Candida , Paixão Pierre Henrique de Menezes , Torres Licia , de Oliveira Marcos Felipe Andrade , Oliveira Mariana de Almeida , Vieira Leda Quercia , de Faria Ana Maria Caetano , Maioli Tatiani Uceli 
Published: August 2024

Abstract
Obesity is a global pandemic associated with several comorbidities, such as cardiovascular diseases and type 2 diabetes. It is also a predisposing factor for infectious diseases, increasing mortality rates. Moreover, diet-induced obesity can cause metabolic fluctuations that affect macrophage differentiation in various organs. In this sense, we investigated how bone marrow-derived macrophages and tissue-resident macrophages in the skin, which have been differentiated in a host with metabolic syndrome and with previous inflammatory burden, respond to Leishmania major infection. Our findings suggest that bone marrow-derived macrophages from obese C57BL/6 mice, even when cultivated in vitro with inflammatory stimuli, are more susceptible to L. major. These macrophages produce less tumor necrosing factor (TNF) and nitric oxide (NO) and show higher arginase activity. Furthermore, obese mice infected with an intermediate dose of L. major in the skin had more severe lesions when analyzed for ulceration, diameter, thickness, and parasite burden. The increase in lesion severity in obese mice was associated with a higher frequency of tissue-resident macrophages, which are less efficient in killing parasites. We also used CCR2−/− mice, which predominantly have tissue-resident macrophages, and found that lesion resolution was delayed in association with CCR2 deficiency. Additionally, obesity potentiated tissue damage, resulting in higher frequency of tissue-resident macrophages. Our results demonstrate that obesity can alter macrophage responses to infection, leading to increased susceptibility to L. major and more severe cutaneous leishmaniasis. These findings may have important implications for managing obesity-related infections and the development of new therapies for cutaneous leishmaniasis.
Blood-feeding stable flies, Stomoxys calcitrans (Diptera: Muscidae), are attracted to, and transmit Staphylococcus aureus (Bacillales: Staphylococcaceae), a causal agent of bovine mastitis: a laboratory pilot study
Authors: Nayani Saif , Meraj Sanam , Renyard Asim , Gries Gerhard 
Published: August 2024

Abstract
Stable flies, Stomoxys calcitrans (Linnaeus) (Diptera: Muscidae), are common blood-feeding ectoparasites of cows and thus potential vectors of the skin-dwelling bacterium Staphylococcus aureus, a causal agent of bovine mastitis which inflicts udder inflammation in cows. Our objectives were to determine whether stable flies (i) are attracted to disease-causing strains of S. aureus, and (ii) transmit S. aureus from infected blood to sterile blood. In 3-chamber olfactometers, five of eight S. aureus strains grown on agar and tested versus sterile agar attracted female stable flies. When flies ingested droplets of blood inoculated with S. aureus at doses of 0 (control), 105 (low), 107 (medium), and &gt; 109 (high) colony-forming units per milliliter and subsequently ingested sterile blood, they transmitted S. aureus to the sterile blood. The dose of S. aureus in blood droplets fed upon by flies during their first feeding bout dose-dependently affected the amount of bacteria that flies transmitted to sterile blood during their second feeding bout, but the time elapsed between feeding bouts (0 h, 1 h, 8 h, and 24 h) had no effect on the amount of microbes transmitted to sterile blood. Our data infer the existence of a positive feedback loop. First, stable flies carrying S. aureus and feeding on cows transmit S. aureus, thereby causing mastitis. As S. aureus bacteria of afflicted cows proliferate, they attract even more flies which, in turn, worsen the infection. This type of feedback loop underscores the need for effective stable fly control tactics that curtail the incidence of bovine mastitis in cows.
Effects of permethrin-treated uniforms on tick submissions to a military passive tick surveillance program
Authors: Nadolny Robyn , Jones Jessica , Taylor Bonnie J , Bowman Loretta , Harkins Kevin 
Published: August 2024

Abstract
Permethrin-treated clothing is often recommended as a first line of defense against tick-borne diseases. In 2012, the permethrin factory-treated Army Combat Uniform was first made available to active duty Soldiers, Army National Guard, Army Reserve Enlisted Soldiers, and the Senior/Junior Reserve Officers Training Corps. Subsequently, Air Force and Marine Corps personnel were also offered permethrin factory-treated uniforms. Here, we use the passive surveillance data collected through the Military Tick Identification/Infection Confirmation Kit (MilTICK) program to determine the effectiveness of permethrin-treated uniforms at protecting Department of Defense personnel from exposure to tick-borne pathogens in the United States. We analyzed whether submissions by self-reported users of the permethrin-treated uniforms had smaller proportions of engorged ticks, certain cohorts of MilTICK users were better protected than others, and specific tick species were better repelled than others. We found that permethrin use resulted in significantly lower proportions of engorged ticks submitted across MilTICK users. Army and Army National Guard personnel reported more permethrin-treated uniform use than other services. For submissions from active duty personnel serving in uniform, the proportion of tick engorgement in the presence of permethrin increased over time, possibly indicating that permethrin-treated uniforms suffer from reduced performance over the life of the garment. We also found that while permethrin reduced all tick species’ ability to feed until engorgement or repletion, blacklegged tick adult females were better able to resist permethrin’s lethal effects than lone star tick and American dog tick adult females. Permethrin-treated clothing plays an important role in keeping military personnel safe from tick-borne diseases.
Effects of Peromyscus spp. (Rodentia: Cricetidae) presence, land use, and ecotone on Ixodes scapularis (Acari: Ixodidae) ecology in an emergent area for tick-borne disease
Authors: Dill Griffin M , Rounsville Thomas F , Bryant Ann M , Groden Eleanor , Gardner Allison M 
Published: August 2024

Abstract
As the range of Ixodes scapularis Say expands, host abundance and land use can play important roles in regions where ticks and their associated pathogens are emerging. Small mammal hosts serve as reservoirs of tick-borne pathogens, with Peromyscus leucopus Rafinesque often considered a primary reservoir. A sympatric species Peromyscus maniculatus Wagner is also a competent reservoir and is notoriously difficult to differentiate from P. leucopus. Anthropogenic land use can alter host and habitat availability, potentially changing tick exposure risk. We tested the hypotheses that tick infestation and pathogen prevalence differ between the two Peromyscus spp. and that host-seeking I. scapularis density and pathogen prevalence differ across land use and ecotone gradients. We live trapped small mammals and collected ticks across 3 land-use classifications and ecotones in Maine, an emergent area for tick-borne disease. We tested each small mammal and tick sample for Borrelia burgdorferi, Anaplasma phagocytophilum, and Babesia microti. While both Peromyscus spp. serve as hosts for immature ticks, P. leucopus exhibited a higher tick infestation frequency and intensity. We did not detect any significant difference in pathogen infection prevalence between the two species. The density of I. scapularis nymphs and the density of infected nymphs did not differ significantly between land-use types, though did differ across ecotones. We also noted a significant north/south gradient, with higher tick densities and pathogen prevalence at the southern end of the study area. Our study highlights the potential variability in tick density and pathogen prevalence across fine spatial scales within an emerging region for tick-borne disease.
Internal Drivers, External Powers, and Nuclear Test Decisions: The Case of India
Authors: Mistry Dinshaw , Chowdhury Saurabh Dutta 
Published: August 2024

Abstract
This article argues that a combination of internal and international factors explain national nuclear test decisions. Internal factors involve the presence and influence of pro-test and anti-test actors (nuclear scientists, government bureaucrats, and the political leadership) in the inner circle making test decisions. International factors involve external power initiatives, in the form of sanctions and incentives, that seek to restrain states from testing. The article applies this framework to analyze variations in India's nuclear testing propensity from the 1960s to the 2020s. Such a framework explains why India tested nuclear weapons in 1974 and 1998 but not at other times, and adds to scholarship on India's nuclear program. Moreover, by specifically examining nuclear test decisions, rather than a country's overall exploration and pursuit of nuclear weapons, this article contributes to the broader literature on nuclear proliferation.
A case of a transplanted kidney with an orthotopic kidney stone
Authors: Jin Zhaofang , Lai Jianjun , Zhang Jianjun 
Published: August 2024

Abstract
A 39-year-old man was admitted to our hospital with kidney stones after kidney transplantation. Kidney, ureter, and bladder radiographs showed multiple stones in the transplanted and orthotopic kidneys, which had not been reported previously. Owing to the larger size of the stones in the transplanted kidney, they needed to be removed. Percutaneous nephrolithotomy and ureteroscopy were performed under B-mode ultrasound guidance. The stone measured 1.9 × 1.6 cm and was located under the calyx of the kidney. A titanium laser fiber was used to dissolve the stones, which were subsequently removed. No adverse reactions occurred during or after the surgery. The causes of stone formation included dietary factors, related drugs, improper fluid intake, and urinary tract infections. As neither the donor nor the recipient had a history of kidney stones, we hypothesized that the stones were a new entity that either developed following transplantation or a long-term complication.