bluuebunny/crossref_metadata_2025_split huggingface dataset:
Effect of an invasive filter-feeder on the zooplankton assemblage in a coastal lagoon
Authors: Bruschetti Martin , Luppi Tomas , Iribarne Oscar 
Published: August 2015

Depletion of phytoplankton biomass by the introduced reef-forming polychaete Ficopomatus enigmaticus has previously been observed in the Mar Chiquita lagoon (37°40′S 57°23′W; Argentina), but the effect of polychaetes on the higher trophic levels is still unknown. To evaluate the effect of this polychaete on the zooplankton assemblage, replicated mesocosm experiments (N = 10) were performed during spring, summer and winter. Mesocosms with reefs and without reefs were installed and grazing intensity and the effect on the zooplankton assemblage by the polychaetes were assessed. Our results show that the reefs of F. enigmaticus generate minor changes in overall composition of zooplankton assemblage. Although the structure of the zooplankton assemblage was different between seasons, the impact of the reefs was not significant in any of them. There was no relationship between the decline of food resource by grazing and changes in the structure of the zooplankton assemblage. Thus, contrary to our hypothesis, the grazing impact of the invasive polychaete on the biomass of primary producers did not generate cascading effects to higher trophic levels. However, changes in some components of the zooplankton assemblage (e.g. cladocerans) clearly show that the reefs of F. enigmaticus have the potential to affect the structure of the zooplankton community. The lack of data of community composition and abundance of zooplankton before the invasion limits the understanding of how this polychaete might have affected the structure and abundance of the zooplankton of this lagoon. Nevertheless this work suggests that these changes may not be so significant.
Altered corticostriatal functional connectivity in individuals with high social anhedonia
Authors: Wang Y. , Liu W.-H. , Li Z. , Wei X.-H. , Jiang X.-Q. , Geng F.-L. , Zou L.-Q. , Lui S. S. Y. , Cheung E. F. C. , Pantelis C. , Chan R. C. K. 
Published: August 2015

Background.Dysregulation of the striatum and altered corticostriatal connectivity have been associated with psychotic disorders. Social anhedonia has been identified as a predictor for the development of schizophrenia spectrum disorders. The aim of the present study was to examine corticostriatal functional connectivity in individuals with high social anhedonia.Method.Twenty-one participants with high social anhedonia score and 30 with low social anhedonia score measured by the Chinese version of the Revised Social Anhedonia Scale were recruited from university undergraduates (age 17–21 years) to undergo resting-state functional MRI scans. Six subdivisions of the striatum in each hemisphere were defined as seeds. Voxel-wise functional connectivity analyses were conducted between each seed and the whole brain voxels, followed by repeated-measures ANOVA for the group effect.Results.Participants with high social anhedonia showed hyper-connectivity between the ventral striatum and the anterior cingulate cortex and the insula, and between the dorsal striatum and the motor cortex. Hypo-connectivity in participants with high social anhedonia was also observed between the ventral striatum and the posterior cingulate cortex. Partial correlation analyses further showed that the functional connectivity between the ventral striatum and the prefrontal cortex was associated with pleasure experience and emotional suppression.Conclusions.Our findings suggest that altered corticostriatal connectivity can be found in participants with high levels of social anhedonia. Since social anhedonia has been considered a predictor for schizophrenia spectrum disorders, our results may provide novel evidence on the early changes in brain functional connectivity in at-risk individuals.
Prognostic signature and clonality pattern of recurrently mutated genes in inactive chronic lymphocytic leukemia
Authors: Hurtado A M , Chen-Liang T-H , Przychodzen B , Hamedi C , Muñoz-Ballester J , Dienes B , García-Malo M D , Antón A I , de Arriba F , Teruel-Montoya R , Ortuño F J , Vicente V , Maciejewski J P , Jerez A 
Published: August 2015

AbstractAn increasing numbers of patients are being diagnosed with asymptomatic early-stage chronic lymphocytic leukemia (CLL), with no treatment indication at baseline. We applied a high-throughput deep-targeted analysis, especially designed for covering widely TP53 and ATM genes, in 180 patients with inactive disease at diagnosis, to test the independent prognostic value of CLL somatic recurrent mutations. We found that 40/180 patients harbored at least one acquired variant with ATM (n=17, 9.4%), NOTCH1 (n=14, 7.7%), TP53 (n=14, 7.7%) and SF3B1 (n=10, 5.5%) as most prevalent mutated genes. Harboring one ‘sub-Sanger’ TP53 mutation granted an independent 3.5-fold increase of probability of needing treatment. Those patients with a double-hit ATM lesion (mutation+11q deletion) had the shorter median time to first treatment (17 months). We found that a genomic variable: TP53 mutations, most of them under the sensitivity of conventional techniques; a cell phenotypic factor: CD38-positive expression; and a classical marker as β2-microglobulin, remained as the unique independent predictors of outcome. The high-throughput determination of TP53 status, particularly in this set of patients frequently lacking high-risk chromosomal aberrations, emerges as a key step, not only for prediction modeling, but also for exploring mutation-specific therapeutic approaches and minimal residual disease monitoring.
Whole-exome analysis reveals novel somatic genomic alterations associated with outcome in immunochemotherapy-treated diffuse large B-cell lymphoma
Authors: Novak A J , Asmann Y W , Maurer M J , Wang C , Slager S L , Hodge L S , Manske M , Price-Troska T , Yang Z-Z , Zimmermann M T , Nowakowski G S , Ansell S M , Witzig T E , McPhail E , Ketterling R , Feldman A L , Dogan A , Link B K , Habermann T M , Cerhan J R 
Published: August 2015

AbstractLack of remission or early relapse remains a major clinical issue in diffuse large B-cell lymphoma (DLBCL), with 30% of patients failing standard of care. Although clinical factors and molecular signatures can partially predict DLBCL outcome, additional information is needed to identify high-risk patients, particularly biologic factors that might ultimately be amenable to intervention. Using whole-exome sequencing data from 51 newly diagnosed and immunochemotherapy-treated DLBCL patients, we evaluated the association of somatic genomic alterations with patient outcome, defined as failure to achieve event-free survival at 24 months after diagnosis (EFS24). We identified 16 genes with mutations, 374 with copy number gains and 151 with copy number losses that were associated with failure to achieve EFS24 (P<0.05). Except forFOXO1 and CIITA,known driver mutations did not correlate with EFS24. Gene losses were localized to 6q21-6q24.2, and gains to 3q13.12-3q29, 11q23.1-11q23.3 and 19q13.12-19q13.43. Globally, the number of gains was highly associated with poor outcome (P=7.4 × 10−12) and when combined withFOXO1mutations identified 77% of cases that failed to achieve EFS24. One gene (SLC22A16) at 6q21, a doxorubicin transporter, was lost in 54% of EFS24 failures and our findings suggest it functions as a doxorubicin transporter in DLBCL cells.
Temporal variation selects for diet–microbe co-metabolic traits in the gut of Gorilla spp
Authors: Gomez Andres , Rothman Jessica M , Petrzelkova Klara , Yeoman Carl J , Vlckova Klara , Umaña Juan D , Carr Monica , Modry David , Todd Angelique , Torralba Manolito , Nelson Karen E , Stumpf Rebecca M , Wilson Brenda A , Blekhman Ran , White Bryan A , Leigh Steven R 
Published: August 2015

Abstract
Although the critical role that our gastrointestinal microbes play in host physiology is now well established, we know little about the factors that influenced the evolution of primate gut microbiomes. To further understand current gut microbiome configurations and diet–microbe co-metabolic fingerprints in primates, from an evolutionary perspective, we characterized fecal bacterial communities and metabolomic profiles in 228 fecal samples of lowland and mountain gorillas (G. g. gorilla and G. b. beringei, respectively), our closest evolutionary relatives after chimpanzees. Our results demonstrate that the gut microbiomes and metabolomes of these two species exhibit significantly different patterns. This is supported by increased abundance of metabolites and bacterial taxa associated with fiber metabolism in mountain gorillas, and enrichment of markers associated with simple sugar, lipid and sterol turnover in the lowland species. However, longitudinal sampling shows that both species’ microbiomes and metabolomes converge when hosts face similar dietary constraints, associated with low fruit availability in their habitats. By showing differences and convergence of diet–microbe co-metabolic fingerprints in two geographically isolated primate species, under specific dietary stimuli, we suggest that dietary constraints triggered during their adaptive radiation were potential factors behind the species-specific microbiome patterns observed in primates today.
Hybrid glasses from strong and fragile metal-organic framework liquids
Authors: Bennett Thomas D. , Tan Jin-Chong , Yue Yuanzheng , Baxter Emma , Ducati Caterina , Terrill Nick J. , Yeung Hamish H. -M. , Zhou Zhongfu , Chen Wenlin , Henke Sebastian , Cheetham Anthony K. , Greaves G. Neville 
Published: August 2015

AbstractHybrid glasses connect the emerging field of metal-organic frameworks (MOFs) with the glass formation, amorphization and melting processes of these chemically versatile systems. Though inorganic zeolites collapse around the glass transition and melt at higher temperatures, the relationship between amorphization and melting has so far not been investigated. Here we show how heating MOFs of zeolitic topology first results in a low density ‘perfect’ glass, similar to those formed in ice, silicon and disaccharides. This order–order transition leads to a super-strong liquid of low fragility that dynamically controls collapse, before a subsequent order–disorder transition, which creates a more fragile high-density liquid. After crystallization to a dense phase, which can be remelted, subsequent quenching results in a bulk glass, virtually identical to the high-density phase. We provide evidence that the wide-ranging melting temperatures of zeolitic MOFs are related to their network topologies and opens up the possibility of ‘melt-casting’ MOF glasses.
Reversible adapting layer produces robust single-crystal electrocatalyst for oxygen evolution
Authors: Tung Ching-Wei , Hsu Ying-Ya , Shen Yen-Ping , Zheng Yixin , Chan Ting-Shan , Sheu Hwo-Shuenn , Cheng Yuan-Chung , Chen Hao Ming 
Published: August 2015

AbstractElectrochemically converting water into oxygen/hydrogen gas is ideal for high-density renewable energy storage in which robust electrocatalysts for efficient oxygen evolution play crucial roles. To date, however, electrocatalysts with long-term stability have remained elusive. Here we report that single-crystal Co3O4 nanocube underlay with a thin CoO layer results in a high-performance and high-stability electrocatalyst in oxygen evolution reaction. An in situ X-ray diffraction method is developed to observe a strong correlation between the initialization of the oxygen evolution and the formation of active metal oxyhydroxide phase. The lattice of skin layer adapts to the structure of the active phase, which enables a reversible facile structural change that facilitates the chemical reactions without breaking the scaffold of the electrocatalysts. The single-crystal nanocube electrode exhibits stable, continuous oxygen evolution for >1,000 h. This robust stability is attributed to the complementary nature of defect-free single-crystal electrocatalyst and the reversible adapting layer.
Genetic association between TRAIL-R1 Thr209Arg and cancer susceptibility
Authors: Geng Peiliang , Li Jianjun , Wang Ning , Liao Yunmei , Ou Juanjuan , Sa Rina , Xie Ganfeng , Liu Chen , Li Hongtao , Xiang Lisha , Liang Houjie 
Published: August 2015

AbstractWe aimed to determine the indecisive association between tumor necrosis factor-related apoptosis-inducing ligand receptor 1 (TRAIL-R1) Thr209Arg polymorphism and inherited susceptibility to cancer. A meta-analysis combining data on 9,517 individuals was performed to assess the association between TRAIL-R1 Thr209Arg and cancer incidence. The summary ORs with 95% CI calculated with the fixed effects model suggested that Thr209Arg was not significantly associated with cancer susceptibility (homozygous model: OR 0.98, 95% CI 0.88–1.09; heterozygous model: OR 0.95, 95% CI 0.87–1.04; allele frequency model: OR 0.99, 95% CI 0.94–1.05; dominant model: OR 0.98, 95% CI 0.91–1.05; recessive model: OR 1.01, 95% CI 0.92–1.10). Stratified analysis by ethnicity and cancer type yielded similar null associations. These statistical data suggest that Thr209Arg in exon 4 of the TRAIL-R1 gene may not represent a modifier of susceptibility to cancer.
Up-regulation of Serum MiR-130b-3p Level is Associated with Renal Damage in Early Lupus Nephritis
Authors: Wang Wanpeng , Mou Shan , Wang Ling , Zhang Minfang , Shao Xinghua , Fang Wei , Lu Renhua , Qi Chaojun , Fan Zhuping , Cao Qin , Wang Qin , Fang Yan , Ni Zhaohui 
Published: August 2015

AbstractSystemic lupus erythematosus (SLE) is a common but severe autoimmune systemic inflammatory disease. Lupus nephritis (LN) is a serious complication of SLE,affecting up to 70% of SLE patients. Circulating microRNAs (miRNA) are emerging as biomarkers for pathological conditions and play significant roles in intercellular communication. In present research, serum samples from healthy control, early and late stage LN patients were used to analyze the expression profile of miRNAs by microarray. Subsequent study demonstrated that miR-130b-3p in serum of patients with early stage LN were significantly up-regulated when compared with healthy controls. In addition,we have also observed that the expression of a large amount of circulating microRNAs significantly decreased in patients with late stage LN. The further analysis found that the expression of serum miR-130b-3p was positively correlated with 24-hour proteinuria and renal chronicity index in patients with early stage LN.Transfection of renal tubular cellline(HK-2)with miR-130b-3p mimics can promote epithelial-mesenchymal transition (EMT). The opposite effects were observed when transfected with miR-130b-3p inhibitors. MiR-130b-3p negatively regulated ERBB2IP expression by directly targeting the 3′-UTR of ERBB2IP The circulating miR-130b-3p might serve as a biomarker and play an important role in renal damage in early stage LN patients.
Phonon properties of graphene derived from molecular dynamics simulations
Authors: Koukaras Emmanuel N. , Kalosakas George , Galiotis Costas , Papagelis Konstantinos 
Published: August 2015

AbstractA method that utilises atomic trajectories and velocities from molecular dynamics simulations has been suitably adapted and employed for the implicit calculation of the phonon dispersion curves of graphene. Classical potentials widely used in the literature were employed. Their performance was assessed for each individual phonon branch and the overall phonon dispersion, using available inelastic x-ray scattering data. The method is promising for systems with large scale periodicity, accounts for anharmonic effects and non-bonding interactions with a general environment and it is applicable under finite temperatures. The temperature dependence of the phonon dispersion curves has been examined with emphasis on the doubly degenerate Raman active Γ-E2g phonon at the zone centre, where experimental results are available. The potentials used show diverse behaviour. The Tersoff-2010 potential exhibits the most systematic and physically sound behaviour in this regard and gives a first-order temperature coefficient of χ = −0.05 cm−1/K for the Γ-E2g shift in agreement with reported experimental values.
Connectivity in grey reef sharks (Carcharhinus amblyrhynchos) determined using empirical and simulated genetic data
Authors: Momigliano Paolo , Harcourt Robert , Robbins William D. , Stow Adam 
Published: August 2015

AbstractGrey reef sharks (Carcharhinus amblyrhynchos) can be one of the numerically dominant high order predators on pristine coral reefs, yet their numbers have declined even in the highly regulated Australian Great Barrier Reef (GBR) Marine Park. Knowledge of both large scale and fine scale genetic connectivity of grey reef sharks is essential for their effective management, but no genetic data are yet available. We investigated grey reef shark genetic structure in the GBR across a 1200 km latitudinal gradient, comparing empirical data with models simulating different levels of migration. The empirical data did not reveal any genetic structuring along the entire latitudinal gradient sampled, suggesting regular widespread dispersal and gene flow of the species throughout most of the GBR. Our simulated datasets indicate that even with substantial migrations (up to 25% of individuals migrating between neighboring reefs) both large scale genetic structure and genotypic spatial autocorrelation at the reef scale were maintained. We suggest that present migration rates therefore exceed this level. These findings have important implications regarding the effectiveness of networks of spatially discontinuous Marine Protected Areas to protect reef sharks.
Identification of the interaction of VP1 with GM130 which may implicate in the pathogenesis of CVB3-induced acute pancreatitis
Authors: Li Xiuzhen , Xia Yanhua , Huang Shengping , Liu Fadi , Ying Ying , Xu Qiufang , Liu Xin , Jin Guili , Papasian Christopher J. , Chen Jack , Fu Mingui , Huang Xiaotian 
Published: August 2015

AbstractCoxsackievirus B3 (CVB3) is a causative agent of viral myocarditis, pancreatitis and meningitis in humans. Although the susceptibility of CVB3-induced acute pancreatitis is age-dependent, the underlying mechanisms remain unclear. Here we identified the host factor Golgi matrix protein 130 (GM130) as a novel target of CVB3 during CVB3-induced acute pancreatitis. The viral protein VP1 interacted with GM130, disrupted GM130-GRASP65 complexes and caused GM130 degradation, which may lead to disruption of the Golgi ribbon and development of acute pancreatitis in mice. Interestingly, the expression level of GM130 in mouse pancreas was age-dependent, which was nicely correlated with the age-associated susceptibility of CVB3-induced acute pancreatitis. Furthermore, interference RNA-mediated knockdown of GM130 significantly reduced CVB3 replication in HeLa cells. Taken together, the study identified GM130 as a novel target of CVB3, which may implicate in the pathogenesis of CVB3-induced acute pancreatitis.
Synchronization Analysis of Master-Slave Probabilistic Boolean Networks
Authors: Lu Jianquan , Zhong Jie , Li Lulu , Ho Daniel W. C. , Cao Jinde 
Published: August 2015

AbstractIn this paper, we analyze the synchronization problem of master-slave probabilistic Boolean networks (PBNs). The master Boolean network (BN) is a deterministic BN, while the slave BN is determined by a series of possible logical functions with certain probability at each discrete time point. In this paper, we firstly define the synchronization of master-slave PBNs with probability one and then we investigate synchronization with probability one. By resorting to new approach called semi-tensor product (STP), the master-slave PBNs are expressed in equivalent algebraic forms. Based on the algebraic form, some necessary and sufficient criteria are derived to guarantee synchronization with probability one. Further, we study the synchronization of master-slave PBNs in probability. Synchronization in probability implies that for any initial states, the master BN can be synchronized by the slave BN with certain probability, while synchronization with probability one implies that master BN can be synchronized by the slave BN with probability one. Based on the equivalent algebraic form, some efficient conditions are derived to guarantee synchronization in probability. Finally, several numerical examples are presented to show the effectiveness of the main results.
Spatiotemporal dynamics of counterpropagating Airy beams
Authors: Wiersma Noémi , Marsal Nicolas , Sciamanna Marc , Wolfersberger Delphine 
Published: August 2015

AbstractWe analyse theoretically the spatiotemporal dynamics of two incoherent counterpropagating Airy beams interacting in a photorefractive crystal under focusing conditions. For a large enough nonlinearity strength the interaction between the two Airy beams leads to light-induced waveguiding. The stability of the waveguide is determined by the crystal length, the nonlinearity strength and the beam’s intensities and is improved when comparing to the situation using Gaussian beams. We further identify the threshold above which the waveguide is no longer static but evolves dynamically either time-periodically or even chaotically. Above the stability threshold, each Airy-soliton moves erratically between privileged output positions that correspond to the spatial positions of the lobes of the counterpropagating Airy beam. These results suggest new ways of creating dynamically varying waveguides, optical logic gates and chaos-based computing.
Collapse of the echinoid Paracentrotus lividus populations in the Eastern Mediterranean—result of climate change?
Authors: Yeruham Erez , Rilov Gil , Shpigel Muki , Abelson Avigdor 
Published: August 2015

AbstractThe European purple sea urchin (Paracentrotus lividus) is considered to be a key herbivore throughout its distribution range—North-East Atlantic and Mediterranean Sea. It was also abundant in its eastern distributional edge, on rocky habitats of the coastline of Israel, but its populations have recently collapsed and today it is an extremely rare species in the region. Field and laboratory experiments, that were carried out in order to examine the impact of the recent sea surface temperature rise in the Eastern Mediterranean, showed massive urchin mortality when temperatures crossed 30.5 °C before reaching peak summer values. These results suggest that elevated seawater temperatures in recent years may be a main cause for the disappearance of P. lividus from the southeast Mediterranean Sea, which may indicate distributional range contraction in this region.