bluuebunny/crossref_metadata_2025_split huggingface dataset:
The Generation of Surfzone Eddies in a Strong Alongshore Current
Authors: Feddersen Falk 
Published: November 2013

AbstractThe surfzone contains energetic two-dimensional horizontal eddies with length scale larger than the water depth. Yet, the dominant eddy generation mechanism is not understood. The wave-resolving model funwaveC is used to simulate surfzone eddies in four case examples, from the SandyDuck field experiment, that had alongshore uniform bathymetry. The funwaveC model is initialized with the observed bathymetry and the incident wave field in 8-m depth and reproduces the observed cross-shore structure of significant wave height and mean alongshore current. Within the surfzone, the wave-resolving funwaveC-modeled E(f, ky) spectra and the bulk (frequency and ky integrated) rotational velocities are consistent with the observations below the sea–swell band (&lt;0.05 Hz), demonstrating that the model can be used to diagnose surfzone eddy generation mechanisms. In the mean-squared perturbation vorticity budget, the breaking wave vorticity forcing term is orders of magnitude larger than the shear instability generation term. Thus, surfzone eddies (vorticity) generally are not generated through a shear instability, with possible exceptions for very narrow banded in frequency and direction and highly obliquely large incident waves. The alongshore wavenumber spectra of breaking wave vorticity forcing is broad with the majority (&gt;80%) of vorticity forcing occurring at short alongshore scales &lt;20 m. However, the alongshore wavenumber spectra of vorticity is red, which may be due to a 2D turbulence inverse energy cascade bringing energy to longer wavelengths or may result from an amplified vorticity response to direct forcing at smaller ky.
Toxicological Assessment of Heavy Straight Run Naphtha in a Repeated Dose/Reproductive Toxicity Screening Test
Authors: McKee Richard H. , Steup David , Schreiner Ceinwen , Podhasky Paula , Malley Linda A. , Roberts Linda 
Published: November 2013

Gasoline blending stocks (naphthas) are comprised of normal, iso- and cycloparaffins and aromatic hydrocarbons with carbon numbers ranging from C4 to C12. Heavy straight run naphtha (HSRN, CAS number 64741-41-9) was selected for toxicity screening because substances of this type contain relatively high levels (28%) of cycloparaffins by comparison to other naphtha streams and the data complement toxicity information on other gasoline blending streams. Rats were exposed by inhalation to wholly vaporized material at levels of approximately 100, 500, or 3000 parts per million (ppm) daily to screen the potential for systemic toxicity, neurotoxicity, reproductive toxicity, and developmental effects to postnatal day 4. All animals survived the treatment period. Principal effects of repeated exposure included increased liver weights in males and females, increased kidney weights in males, and histological changes in the thyroid, secondary to liver enzyme induction. These changes were not considered to be toxicologically meaningful and are not relevant to humans. There were no treatment-related effects in functional observation tests or motor activity; no significant reductions in fertility or changes in other reproductive parameters; and no evidence of developmental toxicity in offspring. The overall no observed adverse effect concentration was 3000 ppm (approximately 13 600 mg/m3). In conclusion the HSRN effects on liver and kidney are consistent with the results of other studies of volatile fractions or other naphthas or formulated gasoline, and there were no HSRN effects on neurological developmental or reproductive parameters.
The Toxicological Properties of Petroleum Gases
Authors: McKee Richard H. , Herron Deborah , Saperstein Mark , Podhasky Paula , Hoffman Gary M. , Roberts Linda 
Published: November 2013

To characterize the toxicological hazards of petroleum gases, 90-day inhalation toxicity (Organization for Economic Cooperation and Development [OECD] 413) and developmental toxicity (OECD 414) tests were conducted with liquefied propane gas (LPG) at concentrations of 1000, 5000, or 10 000 ppm. A micronucleus test (OECD 474) of LPG was also conducted. No systemic or developmental effects were observed; the overall no observed adverse effect concentration (NOAEC) was 10 000 ppm. Further, there was no effect of LPG exposure at levels up to 10 000 ppm on micronucleus induction and no evidence of bone marrow toxicity. Other alkane gases (ethane, propane, n-butane, and isobutane) were then evaluated in combined repeated exposure studies with reproduction/development toxicity screening tests (OECD 422). There were no toxicologically important changes in parameters relating to systemic toxicity or neurotoxicity for any of these gases at concentrations ranging from 9000 to 16 000 ppm. There was no evidence of effects on developmental or reproductive toxicity in the studies of ethane, propane, or n-butane at the highest concentrations tested. However, there was a reduction in mating in the high-exposure group (9000 ppm) of the isobutane study, which although not significantly different was outside the range previously observed in the testing laboratory. Assuming the reduction in mating to have been toxicologically significant, the NOAEC for the isobutane reproductive toxicity screening test was 3000 ppm (7125 mg/m3). A method is proposed by which the toxicity of any of the 106 complex petroleum gas streams can be estimated from its composition.
Oxyplumboroméite, Pb2Sb2O7, a new mineral species of the pyrochlore supergroup from Harstigen mine, Värmland, Sweden
Authors: Hålenius U. , Bosi F. 
Published: November 2013

AbstractOxyplumboroméite, Pb2Sb2O7, is a new mineral of the roméite group of the pyrochlore supergroup (IMA 2013-042). It is found together with calcite and leucophoenicite in fissure fillings in tephroite skarn at the Harstigen mine, Värmland, Sweden. The mineral occurs as yellow to brownish yellow rounded grains or imperfect octahedra. Oxyplumboroméite has a Mohs hardness of ∼5, a calculated density of 6.732 g/cm3 and is isotropic with a calculated refractive index of 2.061. Oxyplumboroméite is cubic, space group Fdm, with the unit-cell parameters a = 10.3783(6) Å, V = 1117.84(11) Å3 and Z = 8. The strongest five X-ray powder-diffraction lines [d in Å(I)(hkl)] are: 2.9915(100)(222), 2.5928(32)(400), 1.8332(48)(440), 1.5638(38)(622) and 1.1900(12)(662). The crystal structure of oxyplumboroméite was refined to an R1 index of 3.02% using 160 unique reflections collected with MoKα radiation. Electron microprobe analyses in combination with crystal-structure refinement, infrared, Mössbauer and electronic absorption spectroscopy resulted in the empirical formula A(Pb0.92Ca0.87Mn0.09Sr0.01Na0.05)Σ1.93B(Sb1.73Fe3+0.27)Σ2.00X+Y[O6.64(OH)0.03]Σ6.67. Oxyplumboroméite is the Pb analogue of oxycalcioroméite, ideally Ca2Sb2O7.
Crystallographic and spectroscopic characterization of a natural Zn-rich spinel approaching the endmember gahnite (ZnAl2O4) composition
Authors: D’Ippolito V. , Andreozzi G. B. , Bosi F. , Hålenius U. , Mantovani L. , Bersani D. , Fregola R. A. 
Published: November 2013

AbstractThe crystal chemistry of a natural, gem-quality, blue-grey Zn-rich spinel crystal from Jemaa, Kaduna State, Nigeria, was studied using electron microprobe, single-crystal X-ray diffraction, optical absorption and Raman spectroscopies. The composition of the crystal approaches the gahnite endmember (ZnAl2O4), ∼94 mol.%, with the remainder being dominated by a hercynite component (FeAl2O4). The unit-cell dimension is 8.0850(3) Å and the tetrahedral and octahedral bond distances are determined asT–O 1.9485(6) Å andM–O 1.9137(3) Å. Crystal chemical analysis resulted in the empirical structural formulaT(Zn0.94Fe2+0.03Al0.03)M(Al1.96Fe2+0.03Fe3+0.01)O4, which shows Zn and Al almost fully ordered in the tetrahedrally and octahedrally coordinatedTandMsites, respectively. Raman spectra obtained using the excitation of the blue 473.1 nm line of a Nd:YAG laser display three of the five Raman-active modes predicted for the general oxide spinel group of minerals. These are the Egmode at 420.6 cm–1and the T2gmodes at 510 cm–1and 661 cm–1, due to vibrations in the AlO6octahedra. Optical absorption spectra recorded in the UV/VIS-NIR-MIR range 2000 29000 cm–1show a dominant absorption band at ∼5000 cm–1which is caused by spin-allowed electronicd–dtransitions in Fe2+located at theTsites. The blue-grey hue exhibited by the sample is mainly due to spin-forbidden electronic transitions inTFe2+and toMFe2+↔MFe3+intervalence charge transfer, and the poor saturation of the colour is due to the small concentration of Fe2+and Fe3+.
Meisserite, Na5(UO2)(SO4)3(SO3OH)(H2O), a new uranyl sulfate mineral from the Blue Lizard mine, San Juan County, Utah, USA
Authors: Plášil J. , Kampf A. R. , Kasatkin A. V. , Marty J. , Škoda R. , Silva S. , Čejka J. 
Published: November 2013

AbstractMeisserite (IMA2013-039), Na5(UO2)(SO4)3(SO3OH)(H2O), is a new uranyl sulfate mineral from the Blue Lizard mine, San Juan County, Utah (USA). It is named in honour of the prominent Swiss mineralogist Nicolas Meisser. The new mineral was found in a sandstone matrix and is associated with chalcanthite, copiapite, ferrinatrite, gypsum, johannite and another new Na-bearing uranyl sulfate, belakovskiite (IMA2013-075). Meisserite is a secondary mineral formed by the post-mining weathering of uraninite. The mineral is triclinic,P,a= 5.32317(10),b= 11.5105(2),c= 13.5562(10) Å, α = 102.864(7)°, β = 97.414(7)°, γ = 91.461(6)°,V= 801.74(6) Å3, andZ= 2. Crystals are prisms elongated on [100], up to 0.3 mm long, exhibiting the forms {010} and {001}. Meisserite is pale green to yellowish green, translucent to transparent and has a very pale yellow streak. It is brittle, with fair cleavage on {100} and {001}, and uneven fracture. The Mohs hardness is estimated at 2. Meisserite is somewhat hygroscopic and easily soluble in water. The calculated density based on the empirical formula is 3.208 g/cm3. Meisserite exhibits bright yellow green fluorescence under both long- and shortwave UV radiation. The mineral is optically biaxial (–), with α = 1.514(1), β = 1.546(1), γ = 1.557(1) (measured in white light). The measured 2V is 60(2)° and the calculated 2V is 60°. Dispersion isr > v, perceptible, and the optical orientation isX≈a,Z≈c*. The mineral is pleochroic, withX(colourless) <Y(pale yellow) ≈Z(pale greenish yellow). The empirical formula of meisserite (based on 19 O a.p.f.u.) is Na5.05(U0.94O2)(SO4)3[SO2.69(OH)1.31](H2O). The Raman spectrum is dominated by the symmetric stretching vibrations of UO22+, SO42–and also weaker O–H stretching vibrations. The eight strongest powder X-ray diffraction lines are [dobsin Å(hkl)Irel]: 13.15 (001) 81, 6.33 (02) 62, 5.64 (01,020) 52, 5.24 (100,012,01) 100, 4.67 (101) 68, 3.849 (1,102,022) 48, 3.614 (02,3) 41, and 3.293 (13,004) 43. The crystal structure of meisserite (R1= 0.018 for 3306 reflections withIobs> 3σI) is topologically unique among known structures of uranyl minerals and inorganic compounds. It contains uranyl pentagonal bipyramids linked by SO4groups to form chains. Na+cations bond to O atoms in the chains and to an SO3OH group and an H2>O group between the chains, thereby forming a heteropolyhedral framework.
Deveroite-(Ce): a new REE-oxalate from Mount Cervandone, Devero Valley, Western-Central Alps, Italy
Authors: Guastoni A. , Nestola F. , Gentile P. , Zorzi F. , Alvaro M. , Lanza A. , Peruzzo L. , Schiazza M. , Casati N. M. 
Published: November 2013

AbstractDeveroite-(Ce), ideally Ce2(C2O4)3·10H2O, is a new mineral (IMA 2013-003) found in the alpine fissures of Mount Cervandone, overlooking the Devero Valley, Piedmont, Italy. It occurs as sprays of colourless elongated tabular, acicular prisms only on cervandonite-(Ce). It has a white streak, a vitreous lustre, is not fluorescent and has a hardness of 2–2.5 (Mohs' scale). The tenacity is brittle and the crystals have a perfect cleavage along {010}. The calculated density is 2.352 g/cm3. Deveroite-(Ce) is biaxial (–) with 2V of ∼77°, is not pleochroic and the extinction angle (β ∧ c) is ∼27°. No twinning was observed. Electron microprobe analyses gave the following chemical formula: (Ce1.01Nd0.33La0.32Pr0.11Y0.11Sm0.01Pb0.04U0.03Th0.01Ca0.04)2.01(C2O4)2.99·9.99H2O. Although synchrotron radiation was not used to solve the structure of deveroite-(Ce) the extremely small size of the sample (13 μm × 3 μm × 1 μm) did not allow us to obtain reliable structural data. However, it was possible to determine the space group (monoclinic, P21/c) and the unit-cell parameters, which are: a = 11.240(8) Å, b = 9.635(11) Å, c = 10.339(12) Å, β = 114.41(10)°, V = 1019.6 Å3. The strongest lines in the powder diffraction pattern [d in Å (I)(hkl)] are: 10.266(100)(100); 4.816(35.26)(21); 3.415(27.83)(300); 5.125(24.70)(200); and 4.988(22.98)(111). Deveroite-(Ce) is named in recognition of Devero valley and Devero Natural Park.
Barikaite, Pb10Ag3(Sb8As11)Σ19S40, a new member of the sartorite homologous series
Authors: Topa D. , Makovicky E. , Tajedin H. , Putz H. , Zagler G. 
Published: November 2013

AbstractBarikaite, ideally Pb10Ag3(Sb8As11)Σ19S40, is a new mineral species from the Barika Au-Ag deposit, Azarbaijan Province, western Iran. It was formed in fractures developed in silica bands situated in massive banded pyrite and baryte ores. These fractures house veinlets that contain a number of Ag-As-Sb-Pb-rich sulfosalts, tetrahedrite-tennantite, realgar, pyrite and electrum. Barikaite appears as inclusions in guettardite. The mineral is opaque, greyish black with a metallic lustre; it is brittle without any discernible cleavage. In reflected light barikaite is greyish white, pleochroism is distinct, white to dark grey. Internal reflections are absent. In crossed polars, anisotropism is distinct with rotation tints in shades of grey. The reflectance data (%, in air) are: 37.0, 39.3 at 470 nm, 34.1, 36.9 at 546 nm, 33.1, 36.2 at 589 nm and 31.3, 34.1 at 650 nm. The Mohs hardness is 3–3½, microhardness VHN50 exhibits the range 192 – 212, with a mean value of 200 kg mm–2. The average results of five electron-microprobe analyses in a grain are (in wt.%): Pb 35.77(33), Ag 5.8(1), Tl 0.15(08), Sb 18.33(09), As 15.64(16), S 24.00(15), total 99.69(10) wt.%, corresponding to Pb9.31Ag2.90Tl0.04(Sb8.12As11.26)Σ19.36S40.37 (on the basis of 32Me + 40S = 72 a.p.f.u.). The simplified formula, Pb10Ag3(Sb8As11)Σ19S40, is in accordance with the results of a crystal-structure analysis, and requires Pb 37.89, Ag 5.91, Sb 17.79, As 15.05 and S 23.42 (wt.%). The variation of chemical composition is minor, the empirical formula ranging from Pb10.39Ag2.32Tl0.02Sb7.52As11.27S40.49 to Pb9.24Ag2.93Tl0.04Sb8.13As11.35S40.31. Barikaite has monoclinic symmetry, space group P21/n and unit-cell parameters a 8.5325(7) Å, b 8.0749(7) Å, c 24.828(2) Å, and b 99.077(6)o, Z = 1. Calculated density for the empirical formula is 5.34 (g cm–3). The strongest eight lines in the (calculated) powder-diffraction pattern [d in Å(I)(hkl)] are: 3.835(63)(022), 3.646(100)(016), 3.441(60)(212), 3.408(62)(14), 2.972(66)(16), 2.769(91)(222), 2.752(78)(24) and 2.133(54)(402). Barikaite is the N = 4 member of the sartorite homologous series with a near-equal role of As and Sb, which have an ordered distribution pattern in the structure. It is a close homeotype of rathite and more distantly related to dufrénoysite (both distinct, pure arsenian N = 4 members) and it completes the spectrum of Sb-rich members of the sartorite homologous series. The new mineral and its name have been approved by the IMA-CNMNC (IMA 2012-055).
Leverettite from the Torrecillas mine, Iquique Provence, Chile: the Co-analogue of herbertsmithite
Authors: Kampf A. R. , Sciberras M. J. , Williams P. A. , Dini M. , Molina Donoso A. A. 
Published: November 2013

AbstractThe new mineral leverettite (IMA 2013-011), ideally Cu3CoCl2(OH)6, was found at the Torrecillas mine, Salar Grande, Iquique Province, Chile, where it occurs as a supergene alteration phase in association with akaganéite, anhydrite, chalcophanite, goethite, halite, manganite, pyrite, quartz and todorokite. Crystals of leverettite are steep rhombohedra to 1 mm with {101} prominent and modified by {001}, sometimes forming V-shaped twins by reflection on {10}. The crystals can also form finger-like, parallel stacked growths along the c axis. The new mineral is medium to deep green in colour and has a light green streak. Crystals are transparent with a vitreous lustre. Mohs hardness is ∼3 and the crystals have a brittle tenacity, a perfect cleavage on {101} and a conchoidal fracture. The measured density is 3.64(2) g cm–3 and calculated density based on the empirical formula is 3.709 g cm–3. Optically, leverettite is uniaxial (–) with ω and ε > 1.8 and exhibits pleochroism with O (bluish green) > E (slightly yellowish green). The empirical formula, determined from electron-microprobe analyses is Cu3(Co0.43Cu0.40Mn0.17Ni0.07Mg0.01)Σ1.08Cl1.87O6.13H6. Leverettite is trigonal (hexagonal), space group Rm, unit-cell parameters a = 6.8436(6) and c = 14.064(1) Å, V = 570.42(8) Å3, Z = 3. The eight strongest X-ray powder diffraction lines are [dobs Å (I)(hkl)]: 5.469(90)(101), 4.701(18)(003), 2.905(22)(021), 2.766(100)(113), 2.269(66)(024), 1.822(26)(033), 1.711(33)(220), 1.383(23)(128). The structure, refined to R1 = 0.023 for 183 Fo > 4σF reflections, shows leverettite to be isostructural with herbertsmithite and gillardite.
Antennal transcriptome profiles of anopheline mosquitoes reveal human host olfactory specialization in Anopheles gambiae
Authors: Rinker David C , Zhou Xiaofan , Pitts Ronald Jason ,   The AGC Consortium, Rokas Antonis , Zwiebel Laurence J 
Published: November 2013

Abstract

Background
Two sibling members of the Anopheles gambiae species complex display notable differences in female blood meal preferences. An. gambiae s.s. has a well-documented preference for feeding upon human hosts, whereas An. quadriannulatus feeds on vertebrate/mammalian hosts, with only opportunistic feeding upon humans. Because mosquito host-seeking behaviors are largely driven by the sensory modality of olfaction, we hypothesized that hallmarks of these divergent host seeking phenotypes will be in evidence within the transcriptome profiles of the antennae, the mosquito’s principal chemosensory appendage.

Results
To test this hypothesis, we have sequenced antennal mRNA of non-bloodfed females from each species and observed a number of distinct quantitative and qualitative differences in their chemosensory gene repertoires. In both species, these gene families show higher rates of sequence polymorphisms than the overall rates in their respective transcriptomes, with potentially important divergences between the two species. Moreover, quantitative differences in odorant receptor transcript abundances have been used to model potential distinctions in volatile odor receptivity between the two sibling species of anophelines.

Conclusion
This analysis suggests that the anthropophagic behavior of An. gambiae s.s. reflects the differential distribution of olfactory receptors in the antenna, likely resulting from a co-option and refinement of molecular components common to both species. This study improves our understanding of the molecular evolution of chemoreceptors in closely related anophelines and suggests possible mechanisms that underlie the behavioral distinctions in host seeking that, in part, account for the differential vectorial capacity of these mosquitoes.
Global transcriptome analysis of AtPAP2 - overexpressing Arabidopsisthalianawith elevated ATP
Authors: Sun Feng , Liang Chao , Whelan James , Yang Jun , Zhang Peng , Lim Boon Leong 
Published: November 2013

AbstractBackgroundAtPAP2 is a purple acid phosphatase that is targeted to both chloroplasts and mitochondria. Over-expression (OE) lines of AtPAP2 grew faster, produced more seeds, and contained higher leaf sucrose and glucose contents. The present study aimed to determine how high energy status affects leaf and root transcriptomes.ResultsATP and ADP levels in the OE lines are 30-50% and 20-50% higher than in the wild-type (WT) plants. Global transcriptome analyses indicated that transcriptional regulation does play a role in sucrose and starch metabolism, nitrogen, potassium and iron uptake, amino acids and secondary metabolites metabolism when there is an ample supply of energy. While the transcript abundance of genes encoding protein components of photosystem I (PS I), photosystem II (PS II) and light harvesting complex I (LHCI) were unaltered, changes in transcript abundance for genes encoding proteins of LHCII are significant. The gene expressions of most enzymes of the Calvin cycle, glycolysis and the tricarboxylic acid (TCA) cycle were unaltered, as these enzymes are known to be regulated by light/redox status or allosteric modulation by the products (e.g. citrate, ATP/ADP ratio), but not at the level of transcription.ConclusionsAtPAP2 overexpression resulted in a widespread reprogramming of the transcriptome in the transgenic plants, which is characterized by changes in the carbon, nitrogen, potassium, and iron metabolism. The fast-growing AtPAP2 OE lines provide an interesting tool for studying the regulation of energy system in plant.
Total gastrectomy increases the incidence of grade III and IV toxicities in patients with gastric cancer receiving adjuvant TS-1 treatment
Authors: Chou Wen-Chi , Chang Chia-Lun , Liu Keng-Hao , Hsu Jun-Te , Hsu Hung-Chih , Shen Wen-Chi , Hung Yu-Shin , Chen Jen-Shi 
Published: November 2013

Abstract

Background
We aimed to evaluate the safety and efficacy of TS-1 adjuvant chemotherapy in Taiwanese patients with gastric cancer.

Methods
We included in this study patients with locally advanced gastric cancer who received adjuvant TS-1 or 5-fluorouracil chemotherapy after curative surgery and extended lymph node dissection between 1 June 2008 and 31 December 2012 at Chang Gung Memorial Hospital. Patient characteristics, tumor features, safety profiles and compliance with TS-1 treatment were retrospectively analyzed from medical charts.

Results
Forty patients received adjuvant chemotherapy with TS-1 and 193 with 5-fluorouracil within the study period. The 1- and 2-year overall survival rates were 90.6% and 87% in the TS-1 group and 95.4% and 86.8% in the 5-fluorouracil group (P = 0.34). The 1- and 2-year disease-free survival rates were 90.6% and 74.7% in the TS-1 group and 88% and 75.7% in the 5-fluorouracil group (P = 0.66). In the TS-1 group, tumor recurrence was more frequent in those with >15 metastatic lymph nodes than ≤15. Overall, 78.9%, 74.3%, 62.1% and 56% of patients underwent TS-1 treatment for at least 3, 6, 9 and 12 months, respectively. The most common adverse events of TS-1 were skin hyperpigmentation (55%), diarrhea (27.5%), dizziness (27.5%) and leucopenia (20%). Severe adverse events (SAEs; grade III or IV toxicity) were diarrhea (7.5%), stomatitis (7.5%), leukopenia (5%), vomiting (2.5%), anorexia (2.5%) and dizziness (2.5%). Patients who underwent total gastrectomy had a significantly greater risk of TS-1-related SAEs than patients who underwent subtotal gastrectomy (40% versus 8%, P = 0.014).

Conclusions
The incidence of SAEs during TS-1 therapy was more common in Taiwanese patients with gastric cancer who underwent total gastrectomy compared with those who underwent subtotal gastrectomy. Clinicians must be aware of and able to manage these SAEs to maximize patient compliance with adjuvant TS-1.