bluuebunny/crossref_metadata_2025_split huggingface dataset:
Emergent quantum phase transition of a Josephson junction coupled to a high-impedance multimode resonator
Authors: Giacomelli Luca , Ciuti Cristiano 
Published: June 2024

AbstractThe physics of a single Josephson junction coupled to a resistive environment is a long-standing fundamental problem at the center of an intense debate, strongly revived by the advent of superconducting platforms with high-impedance multimode resonators. Here we investigate the emergent criticality of a junction coupled to a multimode resonator when the number of modes is increased. We demonstrate how the multimode environment renormalizes the Josephson and capacitive energies of the junction so that in the thermodynamic limit the charging energy dominates when the impedance is larger than the resistance quantum and is negligible otherwise, independently from the bare ratio between the two energy scales and the compact or extended nature of the phase of the junction. Via exact diagonalization, we find that the transition surprisingly stems from a level anticrossing involving not the ground state, but the first excited state, whose energy gap vanishes in the thermodynamic limit. We clarify the nature of the two phases by pointing at a different behavior of the ground and excited states and we show that at the transition point the spectrum displays universality not only at low frequencies. In agreement with recent experiments, we reveal striking spectral signatures of the phase transition.
Obesity-associated microbiomes instigate visceral adipose tissue inflammation by recruitment of distinct neutrophils
Authors: Shantaram Dharti , Hoyd Rebecca , Blaszczak Alecia M. , Antwi Linda , Jalilvand Anahita , Wright Valerie P. , Liu Joey , Smith Alan J. , Bradley David , Lafuse William , Liu YunZhou , Williams Nyelia F. , Snyder Owen , Wheeler Caroline , Needleman Bradley , Brethauer Stacy , Noria Sabrena , Renton David , Perry Kyle A. , Nagareddy Prabha , Wozniak Daniel , Mahajan Sahil , Rana Pranav S. J. B. , Pietrzak Maciej , Schlesinger Larry S. , Spakowicz Daniel J. , Hsueh Willa A. 
Published: June 2024

AbstractNeutrophils are increasingly implicated in chronic inflammation and metabolic disorders. Here, we show that visceral adipose tissue (VAT) from individuals with obesity contains more neutrophils than in those without obesity and is associated with a distinct bacterial community. Exploring the mechanism, we gavaged microbiome-depleted mice with stool from patients with and without obesity during high-fat or normal diet administration. Only mice receiving high-fat diet and stool from subjects with obesity show enrichment of VAT neutrophils, suggesting donor microbiome and recipient diet determine VAT neutrophilia. A rise in pro-inflammatory CD4+ Th1 cells and a drop in immunoregulatory T cells in VAT only follows if there is a transient spike in neutrophils. Human VAT neutrophils exhibit a distinct gene expression pattern that is found in different human tissues, including tumors. VAT neutrophils and bacteria may be a novel therapeutic target for treating inflammatory-driven complications of obesity, including insulin resistance and colon cancer.
Implicating the red body of Nannochloropsis in forming the recalcitrant cell wall polymer algaenan
Authors: Gee Christopher W. , Andersen-Ranberg Johan , Boynton Ethan , Rosen Rachel Z. , Jorgens Danielle , Grob Patricia , Holman Hoi-Ying N. , Niyogi Krishna K. 
Published: June 2024

AbstractStramenopile algae contribute significantly to global primary productivity, and one class, Eustigmatophyceae, is increasingly studied for applications in high-value lipid production. Yet much about their basic biology remains unknown, including the nature of an enigmatic, pigmented globule found in vegetative cells. Here, we present an in-depth examination of this “red body,” focusing on Nannochloropsis oceanica. During the cell cycle, the red body forms adjacent to the plastid, but unexpectedly it is secreted and released with the autosporangial wall following cell division. Shed red bodies contain antioxidant ketocarotenoids, and overexpression of a beta-carotene ketolase results in enlarged red bodies. Infrared spectroscopy indicates long-chain, aliphatic lipids in shed red bodies and cell walls, and UHPLC-HRMS detects a C32 alkyl diol, a potential precursor of algaenan, a recalcitrant cell wall polymer. We propose that the red body transports algaenan precursors from plastid to apoplast to be incorporated into daughter cell walls.
Hydropower capacity factors trending down in the United States
Authors: Turner Sean W. D. , Ghimire Ganesh R. , Hansen Carly , Singh Debjani , Kao Shih-Chieh 
Published: June 2024

AbstractThe United States hydropower fleet has faced increasing environmental and regulatory pressures over the last half century, potentially constraining total generation. Here we show that annual capacity factor has declined at four fifths of United States hydropower plants since 1980, with two thirds of decreasing trends significant at p < 0.05. Results are based on an analysis of annual energy generation totals and nameplate capacities for 610 plants (>5 megawatt), representing 87% of total conventional hydropower capacity in the United States. On aggregate, changes in capacity factor imply a fleetwide, cumulative generation decrease of 23% since 1980 before factoring in capacity upgrades—akin to retiring a Hoover Dam once every two to three years. Changes in water availability explain energy decline in only 21% of plants, highlighting the importance of non-climatic drivers of generation, including deterioration of plant equipment as well as changes to dam operations in support of nonpower objectives.
Structural basis for potent neutralization of human respirovirus type 3 by protective single-domain camelid antibodies
Authors: Johnson Nicole V. , van Scherpenzeel Revina C. , Bakkers Mark J. G. , Ramamohan Ajit R. , van Overveld Daan , Le Lam , Langedijk Johannes P. M. , Kolkman Joost A. , McLellan Jason S. 
Published: June 2024

AbstractRespirovirus 3 is a leading cause of severe acute respiratory infections in vulnerable human populations. Entry into host cells is facilitated by the attachment glycoprotein and the fusion glycoprotein (F). Because of its crucial role, F represents an attractive therapeutic target. Here, we identify 13 F-directed heavy-chain-only antibody fragments that neutralize recombinant respirovirus 3. High-resolution cryo-EM structures of antibody fragments bound to the prefusion conformation of F reveal three distinct, previously uncharacterized epitopes. All three antibody fragments bind quaternary epitopes on F, suggesting mechanisms for neutralization that may include stabilization of the prefusion conformation. Studies in cotton rats demonstrate the prophylactic efficacy of these antibody fragments in reducing viral load in the lungs and nasal passages. These data highlight the potential of heavy-chain-only antibody fragments as effective interventions against respirovirus 3 infection and identify neutralizing epitopes that can be targeted for therapeutic development.
Coexpression enhances cross-species integration of single-cell RNA sequencing across diverse plant species
Authors: Passalacqua Michael John , Gillis Jesse 
Published: June 2024

AbstractSingle-cell RNA sequencing is increasingly used to investigate cross-species differences driven by gene expression and cell-type composition in plants. However, the frequent expansion of plant gene families due to whole-genome duplications makes identification of one-to-one orthologues difficult, complicating integration. Here we demonstrate that coexpression can be used to trim many-to-many orthology families down to identify one-to-one gene pairs with proxy expression profiles, improving the performance of traditional integration methods and reducing barriers to integration across a diverse array of plant species.
Ancient Egyptian scribes and specific skeletal occupational risk markers (Abusir, Old Kingdom)
Authors: Brukner Havelková Petra , Dulíková Veronika , Bejdová Šárka , Vacková Jana , Velemínský Petr , Bárta Miroslav 
Published: June 2024

AbstractMen with writing proficiency enjoyed a privileged position in ancient Egyptian society in the third millennium BC. Research focusing on these officials of elevated social status (“scribes”) usually concentrates on their titles, scribal statues, iconography, etc., but the individuals themselves, and their skeletal remains, have been neglected. The aim of this study is to reveal whether repetitive tasks and maintained postures related to scribal activity can manifest in skeletal changes and identify possible occupational risk factors. A total of 1767 items including entheseal changes, non-metric traits, and degenerative changes were recorded from the human remains of 69 adult males of well-defined social status categories from the necropolis at Abusir (2700–2180 BC). Statistically significant differences between the scribes and the reference group attested a higher incidence of changes in scribes and manifested themselves especially in the occurrence of osteoarthritis of the joints. Our research reveals that remaining in a cross-legged sitting or kneeling position for extended periods, and the repetitive tasks related to writing and the adjusting of the rush pens during scribal activity, caused the extreme overloading of the jaw, neck and shoulder regions.
Unconventional acoustic wave propagation transitions induced by resonant scatterers in the high-density limit
Authors: Matis Bernard R. , Liskey Steven W. , Gangemi Nicholas T. , Edmunds Aaron D. , Wilson William B. , Houston Brian H. , Baldwin Jeffrey W. , Photiadis Douglas M. 
Published: June 2024

AbstractExperiments on ultrasound propagation through a gel doped with resonant encapsulated microbubbles provided evidence for a discontinuous transition between wave propagation regimes at a critical excitation frequency. Such behavior is unlike that observed for soft materials doped with non-resonant air or through liquid foams, and disagrees with a simple mixture model for the effective sound speed. Here, we study the discontinuous transition by measuring the transition as a function of encapsulated microbubble volume fraction. The results show the transition always occurs in the strong-scattering limit (l/λ < 1, l and λ are the mean free path and wavelength, respectively), that at the critical frequency the effective phase velocity changes discontinuously to a constant value with increasing microbubble volume fraction, and the measured critical frequency shows a power law dependence on microbubble volume fraction. The results cannot be explained by multiple scattering theory, viscous effects, mode decoupling, or a critical density of states. It is hypothesized the transition depends upon the microbubble on-resonance effective properties, and we discuss the results within the context of percolation theory. The results shed light on the discontinuous transition’s physics, and suggest soft materials can be engineered in this manner to achieve a broad range of physical properties with potential application in ultrasonic actuators and switches.
Siderite and vivianite as energy sources for the extreme acidophilic bacterium Acidithiobacillus ferrooxidans in the context of mars habitability
Authors: Silva Gabriel Gonçalves , Vincenzi Roberta Almeida , de Araujo Gabriel Guarany , Venceslau Sara Jéssica Soja , Rodrigues Fabio 
Published: June 2024

AbstractPast and present habitability of Mars have been intensely studied in the context of the search for signals of life. Despite the harsh conditions observed today on the planet, some ancient Mars environments could have harbored specific characteristics able to mitigate several challenges for the development of microbial life. In such environments, Fe2+ minerals like siderite (already identified on Mars), and vivianite (proposed, but not confirmed) could sustain a chemolithoautotrophic community. In this study, we investigate the ability of the acidophilic iron-oxidizing chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans to use these minerals as its sole energy source. A. ferrooxidans was grown in media containing siderite or vivianite under different conditions and compared to abiotic controls. Our experiments demonstrated that this microorganism was able to grow, obtaining its energy from the oxidation of Fe2+ that came from the solubilization of these minerals under low pH. Additionally, in sealed flasks without CO2, A. ferrooxidans was able to fix carbon directly from the carbonate ion released from siderite for biomass production, indicating that it could be able to colonize subsurface environments with little or no contact with an atmosphere. These previously unexplored abilities broaden our knowledge on the variety of minerals able to sustain life. In the context of astrobiology, this expands the list of geomicrobiological processes that should be taken into account when considering the habitability of environments beyond Earth, and opens for investigation the possible biological traces left on these substrates as biosignatures.
The positive impact of honeybee activity on fennel crop production and sustainability
Authors: Ali Mahmoud Abbas , Al-Farga Ammar , Seddik M. A. 
Published: June 2024

AbstractThis study investigates the ecological interaction between honeybees (Apis mellifera) and fennel (Foeniculum vulgare) plants, examining the mutual benefits of this relationship. Field experiments conducted in Egypt from December 2022 to May 2023 recorded diverse insect pollinators attracted to fennel flowers, especially honeybees. Assessing honeybee colonies near fennel fields showed improvements in sealed brood (357.5–772.5 cells), unsealed brood (176.3–343.8 cells), pollen collection (53.25–257.5 units), honey accumulation (257.5–877.5 units), and colony strength (7.75–10) over three weeks. Fennel exposure explained 88–99% of variability in foraging metrics. Comparing open versus self-pollinated fennel revealed enhanced attributes with bee pollination, including higher flower age (25.67 vs 19.67 days), more seeds per umbel (121.3 vs 95.33), bigger seeds (6.533 vs 4.400 mm), heavier seeds (0.510 vs 0.237 g/100 seeds), and increased fruit weight per umbel (0.619 vs 0.226 g). Natural variation in seed color and shape also occurred. The outcomes demonstrate the integral role of honeybees in fennel agroecosystems through efficient pollination services that improve crop productivity and quality. Fennel provides abundant nutritional resources that bolster honeybee colony health. This research elucidates the symbiotic bee-fennel relationship, underscoring mutualistic benefits and the importance of ecological conservation for sustainable agriculture.
Synthesis of nickel-sphere coated Ni-Mn layer for efficient electrochemical detection of urea
Authors: Ezzat Nourhan , Hefnawy Mahmoud A. , Fadlallah Sahar A. , El-Sherif Rabab M. , Medany Shymaa S. 
Published: June 2024

AbstractUsing a trustworthy electrochemical sensor in the detection of urea in real blood samples received a great attention these days. A thin layer of nickel-coated nickel-manganese (Ni@NiMn) is electrodeposited on a glassy carbon electrode (GC) (Ni@NiMn/GC) surface and used to construct the electrochemical sensor for urea detection. Whereas, electrodeposition is considered as strong technique for the controllable synthesis of nanoparticles. Thus, X-ray diffraction (XRD), atomic force microscope (AFM), and scanning electron microscope (SEM) techniques were used to characterize the produced electrode. AFM and SEM pictures revealed additional details about the surface morphology, which revealed a homogenous and smooth coating. Furthermore, electrochemical research was carried out in alkaline medium utilizing various electrochemical methods, including cyclic voltammetry (CV), chronoamperometry (CA), and electrochemical impedance spectroscopy (EIS). The electrochemical investigations showed that the electrode had good performance, high stability and effective charge transfer capabilities. The structural, morphological, and electrochemical characteristics of Ni@NiMn/GC electrodes were well understood using the analytical and electrochemical techniques. The electrode showed a limit of detection (LOD) equal to 0.0187 µM and a linear range of detection of 1.0–10 mM of urea. Furthermore, real blood samples were used to examine the efficiency of the prepared sensor. Otherwise, the anti-interfering ability of the modified catalyst was examined toward various interfering species.
Contributing factors for reduction in maternal mortality ratio in India
Authors: Tolani Himanshu , Neogi Sutapa Bandyopadhyay , Pandey Anuj Kumar , Khan Pijush Kanti , Mishra Sidharth Sekhar 
Published: June 2024

AbstractMaternal mortality ratio (MMR) estimates have been studied over time for understanding its variation across the country. However, it is never sufficient without accounting for presence of variability across in terms of space, time, maternal and system level factors. The study endeavours to estimate and quantify the effect of exposures encompassing all maternal health indicators and system level indicators along with space–time effects influencing MMR in India. Using the most recent level of possible -factors of MMR, maternal health indicators from the National Family Health Survey (NFHS: 2019–21) and system level indicators from government reports a heatmap compared the relative performance of all 19 SRS states. Facet plots with a regression line was utilised for studying patterns of MMR for different states in one frame. Using Bayesian Spatio-temporal random effects, evidence for different MMR patterns and quantification of spatial risks among individual states was produced using estimates of MMR from SRS reports (2014–2020). India has witnessed a decline in MMR, and for the majority of the states, this drop is linear. Few states exhibit cyclical trend such as increasing trends for Haryana and West Bengal which was evident from the two analytical models i.e., facet plots and Bayesian spatio- temporal model. Period of major transition in MMR levels which was common to all states is identified as 2009–2013. Bihar and Assam have estimated posterior probabilities for spatial risk that are relatively greater than other SRS states and are classified as hot spots. More than the individual level factors, health system factors account for a greater reduction in MMR. For more robust findings district level reliable estimates are required. As evident from our study the two most strong health system influencers for reducing MMR in India are Institutional delivery and Skilled birth attendance.
miR-124-3p downregulates EGR1 to suppress ischemia-hypoxia reperfusion injury in human iPS cell-derived cardiomyocytes
Authors: Yang Qiaoke , Murata Kozue , Ikeda Tadashi , Minatoya Kenji , Masumoto Hidetoshi 
Published: June 2024

AbstractIschemic heart diseases are a major global cause of death, and despite timely revascularization, heart failure due to ischemia-hypoxia reperfusion (IH/R) injury remains a concern. The study focused on the role of Early Growth Response 1 (EGR1) in IH/R-induced apoptosis in human cardiomyocytes (CMs). Human induced pluripotent stem cell (hiPSC)-derived CMs were cultured under IH/R conditions, revealing higher EGR1 expression in the IH/R group through quantitative real-time polymerase chain reaction (qRT-PCR) and Western blotting (WB). Immunofluorescence analysis (IFA) showed an increased ratio of cleaved Caspase-3-positive apoptotic cells in the IH/R group. Using siRNA for EGR1 successfully downregulated EGR1, suppressing cleaved Caspase-3-positive apoptotic cell ratio. Bioinformatic analysis indicated that EGR1 is a plausible target of miR-124-3p under IH/R conditions. The miR-124-3p mimic, predicted to antagonize EGR1 mRNA, downregulated EGR1 under IH/R conditions in qRT-PCR and WB, as confirmed by IFA. The suppression of EGR1 by the miR-124-3p mimic subsequently reduced CM apoptosis. The study suggests that treatment with miR-124-3p targeting EGR1 could be a potential novel therapeutic approach for cardioprotection in ischemic heart diseases in the future.
Machine learning analysis of thermophysical and thermohydraulic properties in ethylene glycol- and glycerol-based SiO2 nanofluids
Authors: Akilu Suleiman , Sharma K. V. , Baheta Aklilu Tesfamichael , Kanti Praveen Kumar , Paramasivam Prabhu 
Published: June 2024

AbstractThe study investigates the heat transfer and friction factor properties of ethylene glycol and glycerol-based silicon dioxide nanofluids flowing in a circular tube under continuous heat flux circumstances. This study tackles the important requirement for effective thermal management in areas such as electronics cooling, the automobile industry, and renewable energy systems. Previous research has encountered difficulties in enhancing thermal performance while handling the increased friction factor associated with nanofluids. This study conducted experiments in the Reynolds number range of 1300 to 21,000 with particle volume concentrations of up to 1.0%. Nanofluids exhibited superior heat transfer coefficients and friction factor values than the base liquid values. The highest enhancement in heat transfer was 5.4% and 8.3% for glycerol and ethylene glycol -based silicon dioxide Nanofluid with a relative friction factor penalty of ∼30% and 75%, respectively. To model and predict the complicated, nonlinear experimental data, five machine learning approaches were used: linear regression, random forest, extreme gradient boosting, adaptive boosting, and decision tree. Among them, the decision tree-based model performed well with few errors, while the random forest and extreme gradient boosting models were also highly accurate. The findings indicate that these advanced machine learning models can accurately anticipate the thermal performance of nanofluids, providing a dependable tool for improving their use in a variety of thermal systems. This study's findings help to design more effective cooling solutions and improve the sustainability of energy systems.
Underestimation of extremes in sea level surge reconstruction
Authors: Harter Ludovic , Pineau-Guillou Lucia , Chapron Bertrand 
Published: June 2024

AbstractStatistical models are an alternative to numerical models for reconstructing storm surges at a low computational cost. These models directly link surges to metocean variables, i.e., predictors such as atmospheric pressure, wind and waves. Such reconstructions usually underestimate extreme surges. Here, we explore how to reduce biases on extremes using two methods—multiple linear regressions and neural networks—for surge reconstructions. Models with different configurations are tested at 14 long-term tide gauges in the North-East Atlantic. We found that (1) using the wind stress rather than the wind speed as predictor reduces the bias on extremes. (2) Adding the significant wave height as a predictor can reduce biases on extremes at a few locations tested. (3) Building on these statistical models, we show that atmospheric reanalyses likely underestimate extremes over the 19th century. Finally, it is demonstrated that neural networks can effectively predict extreme surges without wind information, but considering the atmospheric pressure input extracted over a sufficiently large area around a given station. This last point may offer new insights into air-sea interaction studies and wind stress parametrization.