bluuebunny/crossref_metadata_2025_split huggingface dataset:
Hofmeister effect of anions on calcium translocation by sarcoplasmic reticulum Ca2+-ATPase
Authors: Tadini-Buoninsegni Francesco , Moncelli Maria Rosa , Peruzzi Niccolò , Ninham Barry W. , Dei Luigi , Nostro Pierandrea Lo 
Published: October 2015

AbstractThe occurrence of Hofmeister (specific ion) effects in various membrane-related physiological processes is well documented. For example the effect of anions on the transport activity of the ion pump Na+, K+-ATPase has been investigated. Here we report on specific anion effects on the ATP-dependent Ca2+ translocation by the sarcoplasmic reticulum Ca2+-ATPase (SERCA). Current measurements following ATP concentration jumps on SERCA-containing vesicles adsorbed on solid supported membranes were carried out in the presence of different potassium salts. We found that monovalent anions strongly interfere with ATP-induced Ca2+ translocation by SERCA, according to their increasing chaotropicity in the Hofmeister series. On the contrary, a significant increase in Ca2+ translocation was observed in the presence of sulphate. We suggest that the anions can affect the conformational transition between the phosphorylated intermediates E1P and E2P of the SERCA cycle. In particular, the stabilization of the E1P conformation by chaotropic anions seems to be related to their adsorption at the enzyme/water and/or at the membrane/water interface, while the more kosmotropic species affect SERCA conformation and functionality by modifying the hydration layers of the enzyme.
Uncovering the sources of DNA found on the Turin Shroud
Authors: Barcaccia Gianni , Galla Giulio , Achilli Alessandro , Olivieri Anna , Torroni Antonio 
Published: October 2015

AbstractThe Turin Shroud is traditionally considered to be the burial cloth in which the body of Jesus Christ was wrapped after his death approximately 2000 years ago. Here, we report the main findings from the analysis of genomic DNA extracted from dust particles vacuumed from parts of the body image and the lateral edge used for radiocarbon dating. Several plant taxa native to the Mediterranean area were identified as well as species with a primary center of origin in Asia, the Middle East or the Americas but introduced in a historical interval later than the Medieval period. Regarding human mitogenome lineages, our analyses detected sequences from multiple subjects of different ethnic origins, which clustered into a number of Western Eurasian haplogroups, including some known to be typical of Western Europe, the Near East, the Arabian Peninsula and the Indian sub-continent. Such diversity does not exclude a Medieval origin in Europe but it would be also compatible with the historic path followed by the Turin Shroud during its presumed journey from the Near East. Furthermore, the results raise the possibility of an Indian manufacture of the linen cloth.
Rapid low dose electron tomography using a direct electron detection camera
Authors: Migunov Vadim , Ryll Henning , Zhuge Xiaodong , Simson Martin , Strüder Lothar , Batenburg K. Joost , Houben Lothar , Dunin-Borkowski Rafal E. 
Published: October 2015

AbstractWe demonstrate the ability to record a tomographic tilt series containing 3487 images in only 3.5 s by using a direct electron detector in a transmission electron microscope. The electron dose is lower by at least one order of magnitude when compared with that used to record a conventional tilt series of fewer than 100 images in 15–60 minutes and the overall signal-to-noise ratio is greater than 4. Our results, which are illustrated for an inorganic nanotube, are important for ultra-low-dose electron tomography of electron-beam-sensitive specimens and real-time dynamic electron tomography of nanoscale objects with sub-ms temporal resolution.
Non-alignment stagnation-point flow of a nanofluid past a permeable stretching/shrinking sheet: Buongiorno’s model
Authors: Hamid Rohana Abdul , Nazar Roslinda , Pop Ioan 
Published: October 2015

AbstractThe paper deals with a stagnation-point boundary layer flow towards a permeable stretching/shrinking sheet in a nanofluid where the flow and the sheet are not aligned. We used the Buongiorno model that is based on the Brownian diffusion and thermophoresis to describe the nanofluid in this problem. The main purpose of the present paper is to examine whether the non-alignment function has the effect on the problem considered when the fluid suction and injection are imposed. It is interesting to note that the non-alignment function can ruin the symmetry of the flows and prominent in the shrinking sheet. The fluid suction will reduce the impact of the non-alignment function of the stagnation flow and the stretching/shrinking sheet but at the same time increasing the velocity profiles and the shear stress at the surface. Furthermore, the effects of the pertinent parameters such as the Brownian motion, thermophoresis, Lewis number and the suction/injection on the flow and heat transfer characteristics are also taken into consideration. The numerical results are shown in the tables and the figures. It is worth mentioning that dual solutions are found to exist for the shrinking sheet.
Differential Responses of Plasma Adropin Concentrations To Dietary Glucose or Fructose Consumption In Humans
Authors: Butler Andrew A. , St-Onge Marie-Pierre , Siebert Emily A. , Medici Valentina , Stanhope Kimber L. , Havel Peter J. 
Published: October 2015

AbstractAdropin is a peptide hormone encoded by the Energy Homeostasis Associated (ENHO) gene whose physiological role in humans remains incompletely defined. Here we investigated the impact of dietary interventions that affect systemic glucose and lipid metabolism on plasma adropin concentrations in humans. Consumption of glucose or fructose as 25% of daily energy requirements (E) differentially affected plasma adropin concentrations (P < 0.005) irrespective of duration, sex or age. Glucose consumption reduced plasma adropin from 3.55 ± 0.26 to 3.28 ± 0.23 ng/ml (N = 42). Fructose consumption increased plasma adropin from 3.63 ± 0.29 to 3.93 ± 0.34 ng/ml (N = 45). Consumption of high fructose corn syrup (HFCS) as 25% E had no effect (3.43 ± 0.32 versus 3.39 ± 0.24 ng/ml, N = 26). Overall, the effect of glucose, HFCS and fructose on circulating adropin concentrations were similar to those observed on postprandial plasma triglyceride concentrations. Furthermore, increases in plasma adropin levels with fructose intake were most robust in individuals exhibiting hypertriglyceridemia. Individuals with low plasma adropin concentrations also exhibited rapid increases in plasma levels following consumption of breakfasts supplemented with lipids. These are the first results linking plasma adropin levels with dietary sugar intake in humans, with the impact of fructose consumption linked to systemic triglyceride metabolism. In addition, dietary fat intake may also increase circulating adropin concentrations.
A new tool for long-term studies of POM-bacteria interactions: overcoming the century-old Bottle Effect
Authors: Ionescu Danny , Bizic-Ionescu Mina , Khalili Arzhang , Malekmohammadi Reza , Morad Mohammad Reza , de Beer Dirk , Grossart Hans-Peter 
Published: October 2015

AbstractDownward fluxes of particulate organic matter (POM) are the major process for sequestering atmospheric CO2 into aquatic sediments for thousands of years. Budget calculations of the biological carbon pump are heavily based on the ratio between carbon export (sedimentation) and remineralization (release to the atmosphere). Current methodologies determine microbial dynamics on POM using closed vessels, which are strongly biased towards heterotrophy due to rapidly changing water chemistry (Bottle Effect). We developed a flow-through rolling tank for long term studies that continuously maintains POM at near in-situ conditions. There, bacterial communities resembled in-situ communities and greatly differed from those in the closed systems. The active particle-associated community in the flow-through system was stable for days, contrary to hours previously reported for closed incubations. In contrast to enhanced respiration rates, the decrease in photosynthetic rates on particles throughout the incubation was much slower in our system than in traditional ones. These results call for reevaluating experimentally-derived carbon fluxes estimated using traditional methods.
Smart gating membranes with in situ self-assembled responsive nanogels as functional gates
Authors: Luo Feng , Xie Rui , Liu Zhuang , Ju Xiao-Jie , Wang Wei , Lin Shuo , Chu Liang-Yin 
Published: October 2015

AbstractSmart gating membranes, inspired by the gating function of ion channels across cell membranes, are artificial membranes composed of non-responsive porous membrane substrates and responsive gates in the membrane pores that are able to dramatically regulate the trans-membrane transport of substances in response to environmental stimuli. Easy fabrication, high flux, significant response and strong mechanical strength are critical for the versatility of such smart gating membranes. Here we show a novel and simple strategy for one-step fabrication of smart gating membranes with three-dimensionally interconnected networks of functional gates, by self-assembling responsive nanogels on membrane pore surfaces in situ during a vapor-induced phase separation process for membrane formation. The smart gating membranes with in situ self-assembled responsive nanogels as functional gates show large flux, significant response and excellent mechanical property simultaneously. Because of the easy fabrication method as well as the concurrent enhancement of flux, response and mechanical property, the proposed smart gating membranes will expand the scope of membrane applications and provide ever better performances in their applications.
Prenatal ethanol exposure increases osteoarthritis susceptibility in female rat offspring by programming a low-functioning IGF-1 signaling pathway
Authors: Ni Qubo , Tan Yang , Zhang Xianrong , Luo Hanwen , Deng Yu , Magdalou Jacques , Chen Liaobin , Wang Hui 
Published: October 2015

AbstractEpidemiological evidence indicates that osteoarthritis (OA) and prenatal ethanol exposure (PEE) are both associated with low birth weight but possible causal interrelationships have not been investigated. To investigate the effects of PEE on the susceptibility to OA in adult rats that experienced intrauterine growth retardation (IUGR) and to explore potential intrauterine mechanisms, we established the rat model of IUGR by PEE and dexamethasone and the female fetus and 24-week-old adult offspring subjected to strenuous running for 6 weeks were sacrificed. Knee joints were collected from fetuses and adult offspring for histochemistry, immunohistochemistry and qPCR assays. Histological analyses and the Mankin score revealed increased cartilage destruction and accelerated OA progression in adult offspring from the PEE group compared to the control group. Immunohistochemistry showed reduced expression of insulin-like growth factor-1 (IGF-1) signaling pathway components. Furthermore, fetuses in the PEE group experienced IUGR but exhibited a higher postnatal growth rate. The expression of many IGF-1 signaling components was downregulated, which coincided with reduced amounts of type II collagen in the epiphyseal cartilage of fetuses in the PEE group. These results suggest that PEE enhances the susceptibility to OA in female adult rat offspring by down-regulating IGF-1 signaling and retarding articular cartilage development.
Phenotype Prediction of Pathogenic Nonsynonymous Single Nucleotide Polymorphisms in WFS1
Authors: Qian Xuli , Qin Luyang , Xing Guangqian , Cao Xin 
Published: October 2015

AbstractWolfram syndrome (WS) is a rare, progressive, neurodegenerative disorder that has an autosomal recessive pattern of inheritance. The gene for WS, wolfram syndrome 1 gene (WFS1), is located on human chromosome 4p16.1 and encodes a transmembrane protein. To date, approximately 230 mutations in WFS1 have been confirmed, in which nonsynonymous single nucleotide polymorphisms (nsSNPs) are the most common forms of genetic variation. Nonetheless, there is poor knowledge on the relationship between SNP genotype and phenotype in other nsSNPs of the WFS1 gene. Here, we analysed 395 nsSNPs associated with the WFS1 gene using different computational methods and identified 20 nsSNPs to be potentially pathogenic. Furthermore, to identify the amino acid distributions and significances of pathogenic nsSNPs in the protein of WFS1, its transmembrane domain was constructed by the TMHMM server, which suggested that mutations outside of the TMhelix could have more effects on protein function. The predicted pathogenic mutations for the nsSNPs of the WFS1 gene provide an excellent guide for screening pathogenic mutations.
Expansion dynamics in a one-dimensional hard-core boson model with three-body interactions
Authors: Ren Jie , Wu Yin-Zhong , Xu Xue-Fen 
Published: October 2015

AbstractUsing the adaptive time-dependent density matrix renormalization group method, we numerically investigate the expansion dynamics of bosons in a one-dimensional hard-core boson model with three-body interactions. It is found that the bosons expand ballistically with weak interaction, which are obtained by local density and the radius Rn. It is shown that the expansion velocity V, obtained from Rn = Vt, is dependent on the number of bosons. As a prominent result, the expansion velocity decreases with the enhancement of three-body interaction. We further study the dynamics of the system, which quenches from the ground state with two-thirds filling, the results indicate the expansion is also ballistic in the gapless phase regime. It could help us detect the phase transition in the system.
Transcranial magnetic stimulation facilitates neurorehabilitation after pediatric traumatic brain injury
Authors: Lu Hongyang , Kobilo Tali , Robertson Courtney , Tong Shanbao , Celnik Pablo , Pelled Galit 
Published: October 2015

AbstractTraumatic brain injury (TBI) is the leading cause of death and disability among children in the United States. Affected children will often suffer from emotional, cognitive and neurological impairments throughout life. In the controlled cortical impact (CCI) animal model of pediatric TBI (postnatal day 16–17) it was demonstrated that injury results in abnormal neuronal hypoactivity in the non-injured primary somatosensory cortex (S1). It materializes that reshaping the abnormal post-injury neuronal activity may provide a suitable strategy to augment rehabilitation. We tested whether high-frequency, non-invasive transcranial magnetic stimulation (TMS) delivered twice a week over a four-week period can rescue the neuronal activity and improve the long-term functional neurophysiological and behavioral outcome in the pediatric CCI model. The results show that TBI rats subjected to TMS therapy showed significant increases in the evoked-fMRI cortical responses (189%), evoked synaptic activity (46%), evoked neuronal firing (200%) and increases expression of cellular markers of neuroplasticity in the non-injured S1 compared to TBI rats that did not receive therapy. Notably, these rats showed less hyperactivity in behavioral tests. These results implicate TMS as a promising approach for reversing the adverse neuronal mechanisms activated post-TBI. Importantly, this intervention could readily be translated to human studies.
Copper Transport Protein Antioxidant-1 Promotes Inflammatory Neovascularization via Chaperone and Transcription Factor Function
Authors: Chen Gin-Fu , Sudhahar Varadarajan , Youn Seock-Won , Das Archita , Cho Jaehyung , Kamiya Tetsuro , Urao Norifumi , McKinney Ronald D. , Surenkhuu Bayasgalan , Hamakubo Takao , Iwanari Hiroko , Li Senlin , Christman John W. , Shantikumar Saran , Angelini Gianni D. , Emanueli Costanza , Ushio-Fukai Masuko , Fukai Tohru 
Published: October 2015

AbstractCopper (Cu), an essential micronutrient, plays a fundamental role in inflammation and angiogenesis; however, its precise mechanism remains undefined. Here we uncover a novel role of Cu transport protein Antioxidant-1 (Atox1), which is originally appreciated as a Cu chaperone and recently discovered as a Cu-dependent transcription factor, in inflammatory neovascularization. Atox1 expression is upregulated in patients and mice with critical limb ischemia. Atox1-deficient mice show impaired limb perfusion recovery with reduced arteriogenesis, angiogenesis and recruitment of inflammatory cells. In vivo intravital microscopy, bone marrow reconstitution and Atox1 gene transfer in Atox1−/− mice show that Atox1 in endothelial cells (ECs) is essential for neovascularization and recruitment of inflammatory cells which release VEGF and TNFα. Mechanistically, Atox1-depleted ECs demonstrate that Cu chaperone function of Atox1 mediated through Cu transporter ATP7A is required for VEGF-induced angiogenesis via activation of Cu enzyme lysyl oxidase. Moreover, Atox1 functions as a Cu-dependent transcription factor for NADPH oxidase organizer p47phox, thereby increasing ROS-NFκB-VCAM-1/ICAM-1 expression and monocyte adhesion in ECs inflamed with TNFα in an ATP7A-independent manner. These findings demonstrate a novel linkage between Atox1 and NADPH oxidase involved in inflammatory neovascularization and suggest Atox1 as a potential therapeutic target for treatment of ischemic disease.
Understanding Cooperative Behavior Based on the Coevolution of Game Strategy and Link Weight
Authors: Huang Keke , Zheng Xiaoping , Li Zhijie , Yang Yeqing 
Published: October 2015

AbstractIn reality, the dependency relationship among individuals is heterogeneous and time-varying. Based on this fact, we present a new mechanism of coevolution of game strategy and link weight when analyzing the evolution of cooperation. In detail, we model the population on a regular network, on which the relationship between players is depicted by a weighted link and prisoner’s dilemma has been applied to describe the interaction of players. Further, the impact of this mechanism on the cooperative behavior has been outlined. By conducting large-scale Monte Carlo simulations, we can easily draw a conclusion that this mechanism can promote cooperation efficiently. Compared with the traditional case, when the temptation of defectionbis large, the fraction of cooperation is still able to keep in a high level. With a comprehensive examination of the distribution of stable link weight, it is evident that the coevolution mechanism would deviate the initial distribution. This mechanism induces the heterogeneity of players, which enhances the fraction of cooperation. Numerical simulations also indicate that an intermediate value of Δ/δ warrants an optimal resolution of prisoner’s dilemma. The mechanism of coevolution of game strategy and link weight has a practical significance and will provide new insight for the further research.
On the correlation between microscopic structural heterogeneity and embrittlement behavior in metallic glasses
Authors: Li Weidong , Gao Yanfei , Bei Hongbin 
Published: October 2015

AbstractIn order to establish a relationship between microstructure and mechanical properties, we systematically annealed a Zr-based bulk metallic glass (BMG) at 100 ~ 300 °C and measured their mechanical and thermal properties. The as-cast BMG exhibits some ductility, while the increase of annealing temperature and time leads to the transition to a brittle behavior that can reach nearly-zero fracture energy. The differential scanning calorimetry did not find any significant changes in crystallization temperature and enthalpy, indicating that the materials still remained fully amorphous. Elastic constants measured by ultrasonic technique vary only slightly with respect to annealing temperature and time, which does obey the empirical relationship between Poisson’s ratio and fracture behavior. Nanoindentation pop-in tests were conducted, from which the pop-in strength mapping provides a “mechanical probe” of the microscopic structural heterogeneities in these metallic glasses. Based on stochastically statistic defect model, we found that the defect density decreases with increasing annealing temperature and annealing time and is exponentially related to the fracture energy. A ductile-versus-brittle behavior (DBB) model based on the structural heterogeneity is developed to identify the physical origins of the embrittlement behavior through the interactions between these defects and crack tip.
Controlled mud-crack patterning and self-organized cracking of polydimethylsiloxane elastomer surfaces
Authors: Seghir Rian , Arscott Steve 
Published: October 2015

AbstractExploiting pattern formation – such as that observed in nature – in the context of micro/nanotechnology could have great benefits if coupled with the traditional top-down lithographic approach. Here, we demonstrate an original and simple method to produce unique, localized and controllable self-organised patterns on elastomeric films. A thin, brittle silica-like crust is formed on the surface of polydimethylsiloxane (PDMS) using oxygen plasma. This crust is subsequently cracked via the deposition of a thin metal film – having residual tensile stress. The density of the mud-crack patterns depends on the plasma dose and on the metal thickness. The mud-crack patterning can be controlled depending on the thickness and shape of the metallization – ultimately leading to regularly spaced cracks and/or metal mesa structures. Such patterning of the cracks indicates a level of self-organization in the structuring and layout of the features – arrived at simply by imposing metallization boundaries in proximity to each other, separated by a distance of the order of the critical dimension of the pattern size apparent in the large surface mud-crack patterns.
Microfluidic White Organic Light-Emitting Diode Based on Integrated Patterns of Greenish-Blue and Yellow Solvent-Free Liquid Emitters
Authors: Kobayashi Naofumi , Kasahara Takashi , Edura Tomohiko , Oshima Juro , Ishimatsu Ryoichi , Tsuwaki Miho , Imato Toshihiko , Shoji Shuichi , Mizuno Jun 
Published: October 2015

AbstractWe demonstrated a novel microfluidic white organic light-emitting diode (microfluidic WOLED) based on integrated sub-100-μm-wide microchannels. Single-μm-thick SU-8-based microchannels, which were sandwiched between indium tin oxide (ITO) anode and cathode pairs, were fabricated by photolithography and heterogeneous bonding technologies. 1-Pyrenebutyric acid 2-ethylhexyl ester (PLQ) was used as a solvent-free greenish-blue liquid emitter, while 2,8-di-tert-butyl-5,11-bis(4-tert-butylphenyl)-6,12-diphenyltetracene (TBRb)-doped PLQ was applied as a yellow liquid emitter. In order to form the liquid white light-emitting layer, the greenish-blue and yellow liquid emitters were alternately injected into the integrated microchannels. The fabricated electro-microfluidic device successfully exhibited white electroluminescence (EL) emission via simultaneous greenish-blue and yellow emissions under an applied voltage of 100 V. A white emission with Commission Internationale de l’Declairage (CIE) color coordinates of (0.40, 0.42) was also obtained; the emission corresponds to warm-white light. The proposed device has potential applications in subpixels of liquid-based microdisplays and for lighting.