bluuebunny/crossref_metadata_2025_split huggingface dataset:
Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean
Authors: Zhao Zihao , Amano Chie , Reinthaler Thomas , Baltar Federico , Orellana Mónica V. , Herndl Gerhard J. 
Published: July 2024

AbstractProteins in the open ocean represent a significant source of organic matter, and their profiles reflect the metabolic activities of marine microorganisms. Here, by analyzing metaproteomic samples collected from the Pacific, Atlantic and Southern Ocean, we reveal size-fractionated patterns of the structure and function of the marine microbiota protein pool in the water column, particularly in the dark ocean (>200 m). Zooplankton proteins contributed three times more than algal proteins to the deep-sea community metaproteome. Gammaproteobacteria exhibited high metabolic activity in the deep-sea, contributing up to 30% of bacterial proteins. Close virus-host interactions of this taxon might explain the dominance of gammaproteobacterial proteins in the dissolved fraction. A high urease expression in nitrifiers suggested links between their dark carbon fixation and zooplankton urea production. In summary, our results uncover the taxonomic contribution of the microbiota to the oceanic protein pool, revealing protein fluxes from particles to the dissolved organic matter pool.
Investigating the response of the butyrate production potential to major fibers in dietary intervention studies
Authors: Van-Wehle Thao , Vital Marius 
Published: July 2024

AbstractInterventions involving dietary fibers are known to benefit host health. A leading contribution of gut microbiota is commonly recognized with production of short chain fatty acids (SCFA) suspected to play a key role. However, the detailed mechanisms are largely unknown, and apart from a well-described bifidogenic effect of some fibers, results for other bacterial taxa are often incongruent between studies. We performed pooled analyses of 16S rRNA gene data derived from intervention studies (n = 14) based on three fibers, namely, inulin-type fructans (ITF), resistant starch (RS), and arabinoxylan-oligosaccharides (AXOS), harmonizing the bioinformatics workflow to reveal taxa stimulated by those substrates, specifically focusing on the SCFA-production potential. The results showed an increased butyrate production potential after ITF (p < 0.05) and RS (p < 0.1) treatment via an increase in bacteria exhibiting the enzyme butyryl-CoA:acetate CoA-transferase (but) that was governed by Faecalibacterium, Anaerostipes (ITF) and Agathobacter (RS) respectively. AXOS did not promote an increase in butyrate producers, nor were pathways linked to propionate production stimulated by any intervention. A bifidogenic effect was observed for AXOS and ITF, which was only partly associated with the behavior of but-containing bacteria and largely represented a separate response. Low and high Ruminococcus abundances pre-intervention for ITF and RS, respectively, promoted an increase in but-containing taxa (p < 0.05) upon interventions, whereas initial Prevotella abundance was negatively associated with responses of butyrate producers for both fibers. Collectively, our data demonstrate targeted stimulation of specific taxa by individual fibers increasing the potential to synthesize butyrate, where gut microbiota composition pre-intervention strongly controlled outcomes.
The plant-sucking insect selects assembly of the gut microbiota from environment to enhance host reproduction
Authors: Shan Hong-Wei , Xia Xie-Jiang , Feng Yi-Lu , Wu Wei , Li Hong-Jie , Sun Zong-Tao , Li Jun-Min , Chen Jian-Ping 
Published: July 2024

AbstractPlant-sucking insects have intricate associations with a diverse array of microorganisms to facilitate their adaptation to specific ecological niches. The midgut of phytophagous true bugs is generally structured into four distinct compartments to accommodate their microbiota. Nevertheless, there is limited understanding regarding the origins of these gut microbiomes, the mechanisms behind microbial community assembly, and the interactions between gut microbiomes and their insect hosts. In this study, we conducted a comprehensive survey of microbial communities within the midgut compartments of a bean bug Riptortus pedestris, soybean plant, and bulk soil across 12 distinct geographical fields in China, utilizing high-throughput sequencing of the 16 S rRNA gene. Our findings illuminated that gut microbiota of the plant-sucking insects predominantly originated from the surrounding soil environment, and plants also play a subordinate role in mediating microbial acquisition for the insects. Furthermore, our investigation suggested that the composition of the insect gut microbiome was probably shaped by host selection and/or microbe-microbe interactions at the gut compartment level, with marginal influence from soil and geographical factors. Additionally, we had unveiled a noteworthy dynamic in the acquisition of core bacterial taxa, particularly Burkholderia, which were initially sourced from the environment and subsequently enriched within the insect midgut compartments. This bacterial enrichment played a significant role in enhancing insect host reproduction. These findings contribute to our evolving understanding of microbiomes within the insect-plant-soil ecosystem, shedding additional light on the intricate interactions between insects and their microbiomes that underpin the ecological significance of microbial partnerships in host adaptation.
Emotional and cognitive influences on alcohol consumption in middle-aged and elderly Tanzanians: a population-based study
Authors: Liu Shuyan , Kazonda Patrick , Leyna Germana H. , Rohr Julia K. , Fawzi Wafaie W. , Shinde Sachin , Abioye Ajibola Ibraheem , Francis Joel M. , Probst Charlotte , Sando David , Mwanyka-Sando Mary , Killewo Japhet , Bärnighausen Till 
Published: July 2024

AbstractAlcohol consumption in Tanzania exceeds the global average. While sociodemographic difference in alcohol consumption in Tanzania have been studied, the relationship between psycho-cognitive phenomena and alcohol consumption has garnered little attention. Our study examines how depressive symptoms and cognitive performance affect alcohol consumption, considering sociodemographic variations. We interviewed 2299 Tanzanian adults, with an average age of 53 years, to assess their alcohol consumption, depressive symptoms, cognitive performance, and sociodemographic characteristics using a zero-inflated negative binomial regression model. The logistic portion of our model revealed that the likelihood alcohol consumption increased by 8.4% (95% confidence interval [CI] 3.6%, 13.1%, p < 0.001) as depressive symptom severity increased. Conversely, the count portion of the model indicated that with each one-unit increase in the severity of depressive symptoms, the estimated number of drinks decreased by 2.3% (95% CI [0.4%, 4.0%], p = .016). Additionally, the number of drinks consumed decreased by 4.7% (95% CI [1.2%, 8.1%], p = .010) for each increased cognitive score. Men exhibited higher alcohol consumption than women, and Christians tended to consume more than Muslims. These findings suggest that middle-aged and elderly adults in Tanzania tend to consume alcohol when they feel depressed but moderate their drinking habits by leveraging their cognitive abilities.
JNJ-77242113, a highly potent, selective peptide targeting the IL-23 receptor, provides robust IL-23 pathway inhibition upon oral dosing in rats and humans
Authors: Fourie Anne M. , Cheng Xiaoli , Chang Leon , Greving Carrie , Li Xinyi , Knight Beverly , Polidori David , Patrick Aaron , Bains Trpta , Steele Ruth , Allen Samantha J. , Patch Raymond J. , Sun Chengzao , Somani Sandeep , Bhandari Ashok , Liu David , Huie Keith , Li Shu , Rodriguez Michael A. , Xue Xiaohua , Kannan Arun , Kosoglou Teddy , Sherlock Jonathan P. , Towne Jennifer , Holland M. Claire , Modi Nishit B. 
Published: July 2024

AbstractThe interleukin (IL)-23 pathway is a pathogenic driver in psoriasis, psoriatic arthritis, and inflammatory bowel disease. Currently, no oral therapeutics selectively target this pathway. JNJ-77242113 is a peptide targeting the IL-23 receptor with high affinity (KD: 7.1 pM). In human cells, JNJ-77242113 potently and selectively inhibited proximal IL-23 signaling (IC50: 5.6 pM) without impacting IL-12 signaling. JNJ-77242113 inhibited IL-23–induced interferon (IFN)γ production in NK cells, and in blood from healthy donors and psoriasis patients (IC50: 18.4, 11 and 9 pM, respectively). In a rat trinitrobenzene sulfonic acid-induced colitis model, oral JNJ-77242113 attenuated disease parameters at doses ≥ 0.3 mg/kg/day. Pharmacologic activity beyond the gastrointestinal tract was also demonstrated. In blood from rats receiving oral JNJ-77242113, dose-dependent inhibition of ex vivo IL-23–stimulated IL-17A production was observed. In an IL-23–induced rat skin inflammation model, JNJ-77242113 inhibited IL-23–induced skin thickening and IL-17A, -17F and -22 gene induction. Oral dosing of JNJ-77242113 in healthy human volunteers inhibited ex vivo IL-23–stimulated IFNγ production in whole blood. Thus, JNJ-77242113 provided selective, systemic IL-23 pathway inhibition in preclinical models which translated to pharmacodynamic activity in healthy human volunteers, supporting the potential for JNJ-77242113 as a selective oral therapy for IL-23–driven immune-mediated diseases.
Tracking and modeling the movement of Queensland fruit flies, Bactrocera tryoni, using harmonic radar in papaya fields
Authors: Hurst Anika L. , O′Brien Allison L. , Miller Nicole D. , Peachey Allysen M. Welty , Yoder James M. , De Faveri Stefano G. , Cheesman Jodie , Manoukis Nicholas C. , Siderhurst Matthew S. 
Published: July 2024

AbstractDetermining movement parameters for pest insects such as tephritid fruit flies is critical to developing models which can be used to increase the effectiveness of surveillance and control strategies. In this study, harmonic radar was used to track wild-caught male Queensland fruit flies (Qflies), Bactrocera tryoni, in papaya fields. Experiment 1 continuously tracked single flies which were prodded to induce movement. Qfly movements from this experiment showed greater mean squared displacement than predicted by both a simple random walk (RW) or a correlated random walk (CRW) model, suggesting that movement parameters derived from the entire data set do not adequately describe the movement of individual Qfly at all spatial scales or for all behavioral states. This conclusion is supported by both fractal and hidden Markov model (HMM) analysis. Lower fractal dimensions (straighter movement paths) were observed at larger spatial scales (> 2.5 m) suggesting that Qflies have qualitatively distinct movement at different scales. Further, a two-state HMM fit the observed movement data better than the CRW or RW models. Experiment 2 identified individual landing locations, twice a day, for groups of released Qflies, demonstrating that flies could be tracked over longer periods of time.
Rivaroxaban versus vitamin K antagonist treatment on the progression of coronary calcification: the IRIVASC-trial
Authors: Stöhr Robert , Reinartz Sebastian , Dirrichs Timm , Witte Klaus , Schuh Alexander , Brandenburg Vincent 
Published: July 2024

AbstractVitamin K antagonists (VKA) remain the only option of anticoagulation for people with mechanical valve replacement and due to their wider availability and lower acquisition costs, VKA’s remain widely used in low- and middle-income countries. It has been suggested that prolonged use of VKAs can increase the development of vascular and valvular calcification, though this effect has not been examined in larger randomized prospective trials. This investigator-initiated multicenter, prospective, randomized, open-label interventional trial randomized patients with baseline coronary or valvular calcification and an indication for prolonged oral anticoagulation therapy to Marcumar or Rivaroxaban. Patients were followed-up through repeat coronary computed tomographies to measure the progression of coronary and valvular calcification for up to 24 months. 192 patients were randomized between 2013 and 2018 to receive either Rivaroxaban or Marcumar and followed for up to 24 months. Coronary calcification significantly increased over time although there was no significant difference in progression between the groups after 12 and 24 months as measured by the Agatston score [360.7 (90.2; 1075.3) vs 380.4 (136.4; 1546.9) p = 0.69], the volume score [295.8 (93.0; 995.3) vs 335.5 (128.7; 1316.9) p = 0.95] and the mass score [58.5 (15.9; 172.0) vs 71.1 (24.8; 257.3) p = 0.5]. Dephosphorylated, uncarboxylated matrix Gla Protein (Dp-ucMGP) significantly decreased in the VKA group [Δ dp-uc MGP – 95.2 (− 554.1; 156.0) vs 231.3 (− 59.7; 388.1) p < 0.001]. There does not appear to be a relevant effect of vitamin K inhibition by the vitamin K antagonist marcumar upon coronary calcification.
Requirements for a dashboard optimized for melanoma patient care through user-centered context exploration
Authors: Hartmann Eva Maria , Küper Alisa , Swoboda Jessica , Lodde Georg Christian , Livingstone Elisabeth , Beckmann Catharina Lena , Schadendorf Dirk , Sachweh Sabine 
Published: July 2024

AbstractFor time-sensitive treatment of a patient with malignant melanoma, physicians must obtain a rapid overview of the patient’s status. This study aimed to analyze context-specific features and processes at the point of care to derive requirements for a dashboard granting more straightforward access to information. The Think-Aloud method, contextual inquiries, and interviews were performed with physicians from the Department of Dermatology at the University Hospital Essen in Germany. The user statements and observations that were obtained were grouped and categorized using an affinity diagram. Based on the derived subjects, requirements were defined, confirmed, and prioritized. The resulting affinity diagram revealed four topics of importance at the point of care. These topics are “Identifying and Processing the Important”, a comprehensive “Patient Record”, tasks and challenges in the “Clinical Routine”, and interactions and experiences with the available “Systems”. All aspects have been reflected in 135 requirements for developing context- and indication-specific patient dashboards. Our work has elucidated the most important aspects to consider when designing a dashboard that improves patient care by enabling physicians to focus on the relevant information. Furthermore, it has been demonstrated that the aspects most often mentioned are not context-specific and can be generalized to other medical contexts.
Hard X-ray Fourier transform holography at free electron lasers source
Authors: Roseker Wojciech , Rysov Rustam , Jo Wonhyuk , Osaka Taito , Philippi-Kobs André , Müller Leonard , Riepp Matthias , Walther Michael , Zozulya Alexey , Bocklage Lars , Lehmkühler Felix , Westermeier Fabian , Weschke Daniel , Sprung Michael , Inoue Ichiro , Yabashi Makina , Grübel Gerhard 
Published: July 2024

AbstractWe report on the feasibility of Fourier transform holography in the hard X-ray regime using a Free Electron Laser source. Our study shows successful single and multi-pulse holographic reconstructions of the nanostructures. We observe beam-induced heating of the sample exposed to the intense X-ray pulses leading to reduced visibility of the holographic reconstructions. Furthermore, we extended our study exploring the feasibility of recording holographic reconstructions with hard X-ray split-and-delay optics. Our study paves the way towards studying dynamics at sub-nanosecond timescales and atomic lengthscales.
Influence of calcination temperature and particle size distribution on the physical properties of SrFe12O19 and BaFe12O19 hexaferrite powders
Authors: Hlosta Jakub , Hrabovská Kamila , Rozbroj Jiří , Nečas Jan , Žurovec David , Diviš Jan , Životský Ondřej 
Published: July 2024

AbstractThe paper deals with the economic optimisation of ferrite powder preparation during producing hard ferrite magnets. The magnetic properties of ferrites are investigated by replacing feedstock and reducing calcination temperature and particles in the order of tens of microns. The granulates about 8–10 mm in size were calcined for 2 h in the temperature range from 1100 °C to 1300 °C and additionally crushed and milled to an average particle size of about 80–90 µm. The scanning electron microscopy images confirmed the agglomerates of particles with different shapes and sizes in tens of µm. The X-ray diffraction measurements revealed that, besides the SrFe12O19 and BaFe12O19 phases, there was also the presence of 2–39% hematite. The highest values of maximum energy product (BH)max = 930 J/m3 and remanent magnetic induction Br = 72.8 mT were obtained at a calcination temperature of 1300 °C. The Henkel plots confirmed the presence of exchange-coupling and dipolar magnetic interactions at lower and higher magnetic fields, respectively. The strength of interactions was also dependent on the calcination temperature. Replacing strontium with barium led to a deterioration of the magnetic parameters, which were optimal at a lower calcination temperature (1100 °C). This phenomenon was partly overcome by reducing the mean particle size of Ba-based hexaferrites to 45–50 µm.
Symptoms of autism in Williams syndrome: a transdiagnostic approach
Authors: Willfors Charlotte , Borg Jacqueline , Kleberg Johan Lundin , Hallman Astrid , Van Der Poll Marcus , Lundin Remnélius Karl , Björlin Avdic Hanna , Bölte Sven , Nordgren Ann 
Published: July 2024

AbstractWilliams syndrome (WS) is associated with atypical social communication and cognition reminiscent of the behaviours observed in autism. Nonetheless, WS also differs significantly from autism, such as regarding social motivation, which is typically enhanced in WS and reduced in autism. This study sought to examine the conditions’ transdiagnostic similarities and differences for autistic symptoms and social functioning, and their developmental trajectories, by comparing individuals with WS (n = 24) and those diagnosed with idiopathic autism (n = 24) and attention deficit hyperactivity disorder (ADHD; n = 24), aged 9 to 53 years, on measures of autism, social functioning, IQ and cooccurring psychiatric conditions. Although only 12.5% in the WS group met the criteria for an autism diagnosis, a majority exhibited distinct difficulties within social communication, social cognition, repetitive behaviours, and atypical sensory reactivity resembling autism. Conversely, elevated social motivation and a high number of social initiatives accompany these characteristics. No group differences in the developmental trajectories of autism symptoms were found. Our results demonstrate that autistic behaviours are more frequent in individuals with WS, than in individuals with idiopathic ADHD, and emphasize the need for clinical management of these behaviours.
In vivo terahertz sensing of psoriasis and eczema patients
Authors: Young Jacob J. , Hernandez-Serrano Arturo I. , Hardwicke Joesph , Pickwell-MacPherson Emma 
Published: July 2024

AbstractIn this study we present the first in vivo clinical study of patients with eczema and psoriasis using terahertz (THz) sensing. Eczema and psoriasis patients were measured using a handheld THz scanner, both before and after the application of moisturiser. We show that THz sensing can distinguish between dry and healthy skin in different regions of the body. Furthermore, the impact of applying moisturiser on the skin can also be observed and potentially evaluated using THz light.
Chimpanzees (Pan troglodytes) strategically manipulate their environment to deny conspecifics access to food
Authors: Kaufhold Stephan P. , Sánchez-Amaro Alejandro , Tan Jingzhi , Fernandez-Navarro Sofia , Atencia Rebeca , Rossano Federico 
Published: July 2024

AbstractHumans modify their environment to grant or prevent others’ access to valuable resources, for example by using locks. We tested whether sanctuary-living chimpanzees (N = 10) would flexibly modify their environment to either allow or deny a dominant conspecific access to a shared food source by giving them the option to change a food reward’s pathway prior to releasing it. The food could end up in one of two locations: one was accessible to both the subject and a dominant conspecific, the other one was only accessible to the subject. We further manipulated the extent of inhibitory control needed for modifying the pathway by varying the subjects’ starting position. Our subjects reoriented the pathway competitively to monopolize food but changed the pathway less often in trials with high inhibitory demands. We further show how inhibitory task demands in a social context influence chimpanzees’ future planning. Our results show that chimpanzees will strategically manipulate their environment to maximize their own and deny a dominant conspecific access to food.
Potential of using an engineered indole lactic acid producing Escherichia coli Nissle 1917 in a murine model of colitis
Authors: Dimopoulou Chrysoula , Guerra Priscila Regina , Mortensen Martin Steen , Kristensen Katja Ann , Pedersen Mikael , Bahl Martin Iain , Sommer Morten Alexander Otto , Licht Tine Rask , Laursen Martin Frederik 
Published: July 2024

AbstractThe gut microbiome is a significant factor in the pathophysiology of ulcerative colitis (UC), prompting investigations into the use of probiotic therapies to counter gastrointestinal inflammation. However, while much attention has been given to the therapeutic potential of microbes at the species and strain level, the discovery and application of their metabolic products may offer more precise and controlled solutions in battling disease. In this work, we examined the therapeutic potential of indole lactic acid (ILA) to alleviate inflammation in a murine model of colitis. A previously constructed ILA-producing Escherichia coli Nissle 1917 strain (EcN aldh) and its isogenic non-ILA producing counterpart (EcN) were studied in a murine model of Dextran Sodium Sulfate (DSS) induced colitis. The colitic animals suffered from severe colitic symptoms, with no differentiation between the groups in body weight loss and disease activity index. However, three days after cessation of DSS treatment the EcN aldh–treated mice showed signs of reduced intestinal inflammation, as manifested by lower concentrations of fecal lipocalin-2. Additionally, expression analysis of the inflamed tissue revealed distinct effects of the EcN aldh strain on proteins associated with intestinal health, such as TFF3, occludin and IL-1β expression. These results show no impact of EcN or EcN aldh on acute DSS-induced colitis, but suggest that in particular EcN aldh may assist recovery from intestinal inflammation.