bluuebunny/crossref_metadata_2025_split huggingface dataset:
Diet Breadth and Variability in Sander spp. Inferred from Stable Isotopes
Authors: Fincel M. J. , Chipps S. R. , Graeb B. D. S. , Brown M. L. 
Published: June 2015

AbstractWe used stable isotopes of carbon and nitrogen to evaluate trophic similarity between sauger Sander canadensis and walleye S. vitreus in three Missouri River impoundments characterized by unique differences in riverine habitat. Mean δ15N was similar for sauger and walleye in each reservoir ranging from 15.7 to 17.8‰ for sauger and 15.2 to 17.7‰ for walleye. However, mean δ13C was greater for sauger (−24‰) than for walleye (−25‰) in Lake Oahe (lacustrine habitat), where rainbow smelt Osmerus mordax is an important prey species for walleye. Variation in δ15N and δ13C values was similar between walleye and sauger in Lewis and Clark Lake (riverine habitat), but was greater for sauger than for walleye in Lake Oahe, implying that in pelagic environments, sauger exhibit a larger diet breadth and lower diet consistency compared with walleyes. Isotope analyses support observations from traditional gut content studies that diet overlap between sauger and walleye varies with environmental conditions and is more similar in riverine food webs than in large lakes and impoundments. Copyright © 2015 John Wiley & Sons, Ltd.
Implementation of integral feedback control in biological systems
Authors: Somvanshi Pramod R. , Patel Anilkumar K. , Bhartiya Sharad , Venkatesh K. V. 
Published: June 2015

Integral control design ensures that a key variable in a system is tightly maintained within acceptable levels. This approach has been widely used in engineering systems to ensure offset free operation in the presence of perturbations. Several biological systems employ such an integral control design to regulate cellular processes. An integral control design motif requires a negative feedback and an integrating process in the network loop. This review describes several biological systems, ranging from bacteria to higher organisms in which the presence of integral control principle has been hypothesized. The review highlights that in addition to the negative feedback, occurrence of zero‐order kinetics in the process is a key element to realize the integral control strategy. Although the integral control motif is common to these systems, the mechanisms involved in achieving it are highly specific and can be incorporated at the level of signaling, metabolism, or at the phenotypic levels. WIREs Syst Biol Med 2015, 7:301–316. doi: 10.1002/wsbm.1307This article is categorized under:

Biological Mechanisms > Cell Signaling
Analytical and Computational Methods > Dynamical Methods
Physiology > Organismal Responses to Environment
Multiple Osteochondroma of the Hand: Initial and Long-Term Follow-up Study
Authors: Woodside Julie Colantoni , Ganey Timothy , Gaston R. Glenn 
Published: June 2015

Background The purpose is to determine the location and type of osteochondromas in patients with multiple osteochondroma of the hand as well as the presence of shortening and angulation. Second, it aims to establish longitudinal data on the change in tumors. Methods Retrospective review of patients with multiple osteochondroma affecting the hand evaluating the location and type of tumors as well as the presence of shortening and angulation is done. We examined radiographs from final follow-up and analyzed them based on patient age at presentation (group I=ages 2–6; II=ages 7–10; III=ages 11–19), to determine changes over time and any differences in the number of tumors, location, and shortening and angulation. Results The most affected bones were the index and small finger metacarpals with an increase seen around the metacarpophalangeal (MCP) joints. The most shortening and angulation were seen on the ulnar side. Group II had the most tumors and the most bones with angulation. Twenty-three hands had longitudinal follow-up with an overall increase of 2.7 tumors per hand with a range of loss of 8 to gain of 16. There was an increase in the number of bones with angulation and shortening. Group I showed the largest increase in tumors, shortening, and angulation. Conclusions The ulnar side and bones around the MCP joints are affected most commonly. The largest change was seen as the patients went from young childhood into adolescence, which may be due to rapid growth during this time. This is the largest study of these patients with the longest longitudinal data.
Assessment of health-related quality of life in end-stage chronic obstructive pulmonary disease and non-small-cell lung cancer patients in Serbia
Authors: Maric Dragana , Jovanovic Dragana , Nagorni-Obradovic Ljudmila , Stjepanovic Mihailo , Kisic-Tepavcevic Darija , Pekmezovic Tatjana 
Published: June 2015

ABSTRACTObjective:Under conditions in which palliative care has not yet become part of clinical practice, the differences in palliative care needs between patients with cancer and other life-limiting diseases can yield knowledge that will be very valuable for future planning. The aim of our investigation was to compare health-related quality of life (HRQoL) for patients with end-stage chronic obstructive pulmonary disease (COPD) and those with non-small-cell lung cancer (NSCLC) in Belgrade, Serbia. We also evaluated the influence of demographic, socioeconomic, and clinical factors on HRQoL for both patient groups.Method:This cross-sectional study included 100 NSCLC patients (stages IIIb and IV) and 100 patients with stage IV COPD. Measures included the SF-36 questionnaire, the EORTC QLQ–C30, the St. George's Respiratory Questionnaire, and the Beck Depression Inventory (BDI). Associations of demographic, socioeconomic, and clinical factors with QoL were examined using linear regression analyses.Results:The COPD group scored significantly lower compared to NSCLC patients in all SF-36 domains except for bodily pain. Additionally, a significantly higher level of depressive symptoms was observed in COPD patients. A worse physical QoL for COPD patients was independently associated with a longer duration of unemployment, a lack of wage earning, lower Karnofsky Performance Status (KPS) scores, and higher levels of depression. A worse mental QoL for COPD patients was related to a longer duration of disease, poorer KPS scores, and higher BDI scores. The independent variables significantly associated with worse physical and mental QoL of NSCLC patients were lower KPS and higher BDI scores.Significance of Results:A worse QoL, a significantly higher level of depressive symptoms, and adverse socioeconomic status in the COPD group imposes the need for development of more intensive psychosocial and community support for COPD patients during implementation of palliative care.
Distinct domains in Bub1 localize RZZ and BubR1 to kinetochores to regulate the checkpoint
Authors: Zhang Gang , Lischetti Tiziana , Hayward Daniel G. , Nilsson Jakob 
Published: June 2015

AbstractThe spindle assembly checkpoint (SAC) ensures proper chromosome segregation by delaying anaphase onset in response to unattached kinetochores. Checkpoint signalling requires the kinetochore localization of the Mad1–Mad2 complex that in more complex eukaryotes depends on the Rod–Zwilch–ZW10 (RZZ) complex. The kinetochore protein Zwint has been proposed to be the kinetochore receptor for RZZ, but here we show that Bub1 and not Zwint is required for RZZ recruitment. We find that the middle region of Bub1 encompassing a domain essential for SAC signalling contributes to RZZ localization. In addition, we show that a distinct region in Bub1 mediates kinetochore localization of BubR1 through direct binding, but surprisingly removal of this region increases checkpoint strength. Our work thus uncovers how Bub1 coordinates checkpoint signalling by distinct domains for RZZ and BubR1 recruitment and suggests that Bub1 localizes antagonistic checkpoint activities.
Biological invasion and biological control select for different life histories
Authors: Tayeh Ashraf , Hufbauer Ruth A. , Estoup Arnaud , Ravigné Virginie , Frachon Léa , Facon Benoit 
Published: June 2015

AbstractBiological invaders have long been hypothesized to exhibit the fast end of the life-history spectrum, with early reproduction and a short lifespan. Here, we examine the rapid evolution of life history within the harlequin ladybird Harmonia axyridis. The species, once used as a biological control agent, is now a worldwide invader. We show that biocontrol populations have evolved a classic fast life history during their maintenance in laboratories. Invasive populations also reproduce earlier than native populations, but later than biocontrol ones. Invaders allocate more resources to reproduction than native and biocontrol individuals, and their reproduction is spread over a longer lifespan. This life history is best described as a bet-hedging strategy. We assert that invasiveness cannot be explained only by invoking faster life histories. Instead, the evolution of life history within invasive populations can progress rapidly and converge to a fine-tuned evolutionary match between the invaded environment and the invader.
Theoretical predictions on the electronic structure and charge carrier mobility in 2D Phosphorus sheets
Authors: Xiao Jin , Long Mengqiu , Zhang Xiaojiao , Ouyang Jun , Xu Hui , Gao Yongli 
Published: June 2015

AbstractWe have investigated the electronic structure and carrier mobility of four types of phosphorous monolayer sheet (α-P, β-P,γ-P and δ-P) using density functional theory combined with Boltzmann transport method and relaxation time approximation. It is shown that α-P, β-P and γ-P are indirect gap semiconductors, while δ-P is a direct one. All four sheets have ultrahigh carrier mobility and show anisotropy in-plane. The highest mobility value is ~3 × 105 cm2V−1s−1, which is comparable to that of graphene. Because of the huge difference between the hole and electron mobilities, α-P, γ-P and δ-P sheets can be considered as n-type semiconductors and β-P sheet can be considered as a p-type semiconductor. Our results suggest that phosphorous monolayer sheets can be considered as a new type of two dimensional materials for applications in optoelectronics and nanoelectronic devices.
Formation of carbonatite-related giant rare-earth-element deposits by the recycling of marine sediments
Authors: Hou Zengqian , Liu Yan , Tian Shihong , Yang Zhiming , Xie Yuling 
Published: June 2015

AbstractCarbonatite-associated rare-earth-element (REE) deposits are the most significant source of the world’s REEs; however, their genesis remains unclear. Here, we present new Sr-Nd-Pb and C-O isotopic data for Cenozoic carbonatite-hosted giant REE deposits in southwest China. These REE deposits are located along the western margin of the Yangtze Craton that experienced Proterozoic lithospheric accretion and controlled by Cenozoic strike-slip faults related to Indo-Asian continental collision. The Cenozoic carbonatites were emplaced as stocks or dykes with associated syenites and tend to be extremely enriched in Ba, Sr and REEs and have high 87Sr/86Sr ratios (>0.7055). These carbonatites were likely formed by melting of the sub-continental lithospheric mantle (SCLM), which had been previously metasomatized by high-flux REE- and CO2-rich fluids derived from subducted marine sediments. The fertility of these carbonatites depends on the release of REEs from recycled marine sediments and on the intensity of metasomatic REE refertilization of the SCLM. We suggest that cratonic edges, particularly along ancient convergent margins, possess the optimal configuration for generating giant REE deposits; therefore, areas of metamorphic basement bounded or cut by translithospheric faults along cratonic edges have a high potential for such deposits.
Identifying enhanced cortico-basal ganglia loops associated with prolonged dance training
Authors: Li Gujing , He Hui , Huang Mengting , Zhang Xingxing , Lu Jing , Lai Yongxiu , Luo Cheng , Yao Dezhong 
Published: June 2015

AbstractStudies have revealed that prolonged, specialized training combined with higher cognitive conditioning induces enhanced brain alternation. In particular, dancers with long-term dance experience exhibit superior motor control and integration with their sensorimotor networks. However, little is known about the functional connectivity patterns of spontaneous intrinsic activities in the sensorimotor network of dancers. Our study examined the functional connectivity density (FCD) of dancers with a mean period of over 10 years of dance training in contrast with a matched non-dancer group without formal dance training using resting-state fMRI scans. FCD was mapped and analyzed and the functional connectivity (FC) analyses were then performed based on the difference of FCD. Compared to the non-dancers, the dancers exhibited significantly increased FCD in the precentral gyri, postcentral gyri and bilateral putamen. Furthermore, the results of the FC analysis revealed enhanced connections between the middle cingulate cortex and the bilateral putamen and between the precentral and the postcentral gyri. All findings indicated an enhanced functional integration in the cortico-basal ganglia loops that govern motor control and integration in dancers. These findings might reflect improved sensorimotor function for the dancers consequent to long-term dance training.
A comparative analysis of high-throughput platforms for validation of a circulating microRNA signature in diabetic retinopathy
Authors: Farr Ryan J. , Januszewski Andrzej S. , Joglekar Mugdha V. , Liang Helena , McAulley Annie K. , Hewitt Alex W. , Thomas Helen E. , Loudovaris Tom , Kay Thomas W. H. , Jenkins Alicia , Hardikar Anandwardhan A. 
Published: June 2015

AbstractMicroRNAs are now increasingly recognized as biomarkers of disease progression. Several quantitative real-time PCR (qPCR) platforms have been developed to determine the relative levels of microRNAs in biological fluids. We systematically compared the detection of cellular and circulating microRNA using a standard 96-well platform, a high-content microfluidics platform and two ultra-high content platforms. We used extensive analytical tools to compute inter- and intra-run variability and concordance measured using fidelity scoring, coefficient of variation and cluster analysis. We carried out unprejudiced next generation sequencing to identify a microRNA signature for Diabetic Retinopathy (DR) and systematically assessed the validation of this signature on clinical samples using each of the above four qPCR platforms. The results indicate that sensitivity to measure low copy number microRNAs is inversely related to qPCR reaction volume and that the choice of platform for microRNA biomarker validation should be made based on the abundance of miRNAs of interest.
Age-dependent variation in cytokines, chemokines and biologic analytes rinsed from the surface of healthy human skin
Authors: Kinn Patrick M. , Holdren Grant O. , Westermeyer Brittney A. , Abuissa Mousa , Fischer Carol L. , Fairley Janet A. , Brogden Kim A. , Brogden Nicole K. 
Published: June 2015

AbstractIn the skin, aging is associated with overall epidermal thinning, decreased barrier function and gradual deterioration of the epidermal immune response. However, the presence and role of cytokines, chemokines and biologic analytes (CCBAs) in immunosenescence are not known. Here we identified age-related changes in skin properties and CCBAs from stratum corneum of healthy human subjects, providing a means to utilize CCBAs as benchmarks for aging skin health. Transepidermal water loss and a(*) (skin redness) decreased in an age-dependent manner and were significantly lower (p < 0.05) in Groups 2 (56.6 ± 4.6 years) and 3 (72.9 ± 3.0 years) vs. Group 1 (24.3 ± 2.8 years). In skin wash fluid, 48 CCBAs were detected; seven were significantly lower (p < 0.05) in Groups 2 and 3: EGF, FGF-2, IFNα2, IL-1RA, HSA, keratin-6 and involucrin; cortisol was significantly higher (p < 0.05) in Groups 2 and 3. Our results correspond with the pro-inflammatory shift that occurs with immunosenescence and also provides basis for understanding the inflammatory changes in normal aging skin.
B cells Using Calcium Signaling for Specific and Rapid Detection of Escherichia coli O157:H7
Authors: Wang Ling , Wang Ronghui , Kong Byung-Whi , Jin Sha , Ye Kaiming , Fang Weihuan , Li Yanbin 
Published: June 2015

AbstractA rapid and sensitive detection technology is highly desirable for specific detection of E. coli O157:H7, one of the leading bacterial pathogens causing foodborne illness. In this study, we reported the rapid detection of E. coli O157:H7 by using calcium signaling of the B cell upon cellular membrane anchors anti-E. coli O157:H7 IgM. The binding of E. coli O157:H7 to the IgM on B cell surface activates the B cell receptor (BCR)-induced Ca2+ signaling pathway and results in the release of Ca2+ within seconds. The elevated intracellular Ca2+ triggers Fura-2, a fluorescent Ca2+ indicator, for reporting the presence of pathogens. The Fura-2 is transferred to B cells before detection. The study demonstrated that the developed B cell based biosensor was able to specifically detect E. coli O157:H7 at the low concentration within 10 min in pure culture samples. Finally, the B cell based biosensor was used for the detection of E. coli O157:H7 in ground beef samples. With its short detection time and high sensitivity at the low concentration of the target bacteria, this B cell biosensor shows promise in future application of the high throughput and rapid food detection, biosafety and environmental monitoring.
Tunable Bistability in Hybrid Bose-Einstein Condensate Optomechanics
Authors: Yasir Kashif Ammar , Liu Wu-Ming 
Published: June 2015

AbstractCavity-optomechanics, a rapidly developing area of research, has made a remarkable progress. A stunning manifestation of optomechanical phenomena is in exploiting the mechanical effects of light to couple the optical degree of freedom with mechanical degree of freedom. In this report, we investigate the controlled bistable dynamics of such hybrid optomechanical system composed of cigar-shaped Bose-Einstein condensate (BEC) trapped inside high-finesse optical cavity with one moving-end mirror and is driven by a single mode optical field. The numerical results provide evidence for controlled optical bistability in optomechanics using transverse optical field which directly interacts with atoms causing the coupling of transverse field with momentum side modes, exited by intra-cavity field. This technique of transverse field coupling is also used to control bistable dynamics of both moving-end mirror and BEC. The report provides an understanding of temporal dynamics of moving-end mirror and BEC with respect to transverse field. Moreover, dependence of effective potential of the system on transverse field has also been discussed. To observe this phenomena in laboratory, we have suggested a certain set of experimental parameters. These findings provide a platform to investigate the tunable behavior of novel phenomenon like electromagnetically induced transparency and entanglement in hybrid systems.
MTHFR C677T polymorphism interaction with heavy alcohol consumption increases head and neck carcinoma risk
Authors: Zhuo Xianlu , Song Jue , Li Dairong , Wu Yongzhong , Zhou Qi 
Published: June 2015

AbstractMTHFR C677T polymorphism has been indicated to be a risk factor for cancers, but its association with head and neck cancer (HNC) risk remains inconclusive. In the present study, we aimed to get a more precise estimation by performing a quantitative meta-analysis. Published papers up to Jun 2014 was searched and screened. Necessary information was rigorously extracted for data pooling and analyzing and then, subgroup analyses on ethnicity, source of controls, sample size, tumor type, smoking and drinking status were also carried out. As a result, twenty-three case-control studies including 14298 subjects were included. The overall data failed to reveal a significant association between MTHFR C677T polymorphism and HNC risk (homozygote comparison model: OR = 1.16; 95%CI = 0.93-1.45; dominant model: OR = 1.05; 95%CI = 0.90-1.21; recessive model: OR = 1.14; 95%CI = 0.93-1.38). However, in the subgroup analysis about drinking status, increase risk was shown in the heavy drinking subgroup (TT vs CC: OR = 3.11; 95%CI = 1.52-3.02). In conclusion, the results of the present study suggest that Homozygous TT alleles of MTHFR C677T polymorphism might be a risk factor for HNC among individuals who have a heavy drinking history. Further studies are needed to get a more definitive conclusion.
CO2-Selective Nanoporous Metal-Organic Framework Microcantilevers
Authors: Yim Changyong , Lee Moonchan , Yun Minhyuk , Kim Gook-Hee , Kim Kyong Tae , Jeon Sangmin 
Published: June 2015

AbstractNanoporous anodic aluminum oxide (AAO) microcantilevers are fabricated and MIL-53 (Al) metal-organic framework (MOF) layers are directly synthesized on each cantilever surface by using the aluminum oxide as the metal ion source. Exposure of the MIL53-AAO cantilevers to various concentrations of CO2, N2, CO and Ar induces changes in their deflections and resonance frequencies. The results of the resonance frequency measurements for the different adsorbed gas molecules are almost identical when the frequency changes are normalized by the molecular weights of the gases. In contrast, the deflection measurements show that only CO2 adsorption induces substantial bending of the MIL53-AAO cantilevers. This selective deflection of the cantilevers is attributed to the strong interactions between CO2 and the hydroxyl groups in MIL-53, which induce structural changes in the MIL-53 layers. Simultaneous measurements of the resonance frequency and the deflection are performed to show that the diffusion of CO2 into the nanoporous MIL-53 layers occurs very rapidly, whereas the binding of CO2 to hydroxyl groups occurs relatively slowly, which indicates that the adsorption of CO2 onto the MIL-53 layers and the desorption of CO2 from the MIL-53 layers are reaction limited.
Primary Macrophage Chemotaxis Induced by Cannabinoid Receptor 2 Agonists Occurs Independently of the CB2 Receptor
Authors: Taylor Lewis , Christou Ivy , Kapellos Theodore S. , Buchan Alice , Brodermann Maximillian H. , Gianella-Borradori Matteo , Russell Angela , Iqbal Asif J. , Greaves David R. 
Published: June 2015

AbstractActivation of CB2 has been demonstrated to induce directed immune cell migration. However, the ability of CB2 to act as a chemoattractant receptor in macrophages remains largely unexplored. Using a real-time chemotaxis assay and a panel of chemically diverse and widely used CB2 agonists, we set out to examine whether CB2 modulates primary murine macrophage chemotaxis. We report that of 12 agonists tested, only JWH133, HU308, L-759,656 and L-759,633 acted as macrophage chemoattractants. Surprisingly, neither pharmacological inhibition nor genetic ablation of CB2 had any effect on CB2 agonist-induced macrophage chemotaxis. As chemotaxis was pertussis toxin sensitive in both WT and CB2-/- macrophages, we concluded that a non-CB1/CB2, Gi/o-coupled GPCR must be responsible for CB2 agonist-induced macrophage migration. The obvious candidate receptors GPR18 and GPR55 could not mediate JWH133 or HU308-induced cytoskeletal rearrangement or JWH133-induced β-arrestin recruitment in cells transfected with either receptor, demonstrating that neither are the unidentified GPCR. Taken together our results conclusively demonstrate that CB2 is not a chemoattractant receptor for murine macrophages. Furthermore we show for the first time that JWH133, HU308, L-759,656 and L-759,633 have off-target effects of functional consequence in primary cells and we believe that our findings have wide ranging implications for the entire cannabinoid field.