bluuebunny/crossref_metadata_2025_split huggingface dataset:
Sex contribution to average age at onset of Huntington’s disease depends on the number of (CAG)n repeats
Authors: Stanisławska-Sachadyn Anna , Krzemiński Michał , Zielonka Daniel , Krygier Magdalena , Ziętkiewicz Ewa , Sławek Jarosław , Limon Janusz ,   REGISTRY investigators of the European Huntington’s Disease Network (EHDN)
Published: July 2024

AbstractHuntington’s disease (HD) is a hereditary neurodegenerative disorder caused by the extension of the CAG repeats in exon 1 of the HTT gene and is transmitted in a dominant manner. The present study aimed to assess whether patients’ sex, in the context of mutated and normal allele length, contributes to age on onset (AO) of HD. The study population comprised a large cohort of 3723 HD patients from the European Huntington’s Disease Network’s REGISTRY database collected at 160 sites across 17 European countries and in one location outside Europe. The data were analyzed using regression models and factorial analysis of variance (ANOVA) considering both mutated allele length and sex as predictors of patients’ AO. AO, as described by the rater’s estimate, was found to be later in affected women than in men across the whole population. This difference was most pronounced in a subgroup of 1273 patients with relatively short variants of the mutated allele (40–45 CAG repeats) and normal alleles in a higher half of length distribution—namely, more than 17 CAG repeats; however, it was also observed in each group. Our results presented in this observational study point to sex-related differences in AO, most pronounced in the presence of the short mutated and long normal allele, which may add to understanding the dynamics of AO in Huntington’s Disease.Trial registration: ClinicalTrials.gov identifier NCT01590589.
High-resolution elevation models of Larsen B glaciers extracted from 1960s imagery
Authors: North Ryan , Barrows Timothy T. 
Published: July 2024

AbstractAccelerated warming since the 1950s has caused dramatic change to ice shelves and outlet glaciers on the Antarctic Peninsula. Long observational records of ice loss in Antarctica are rare but essential to accurately inform mass balance estimates of glaciers. Here, we use aerial images from 1968 to reveal glacier configurations in the Larsen B region. We use structure-from-motion photogrammetry to construct high-resolution (3.2 m at best) elevation models covering up to 91% of Jorum, Crane, Mapple, Melville and Flask Glaciers. The historical elevation models provide glacier geometries decades before the Larsen B Ice Shelf collapse in 2002, allowing the determination of pre-collapse and post-collapse elevation differences. Results confirm that these five tributary glaciers of the former Larsen B Ice Shelf were relatively stable between 1968 and 2001. However, the net surface elevation differences over grounded ice between 1968 and 2021 equate to 35.3 ± 1.2 Gt of ice loss related to dynamic changes after the ice shelf removal. Archived imagery is an underutilised resource in Antarctica and was crucial here to observe glacier geometry in high-resolution decades before significant changes to ice dynamics.
Exploring the feasibility of Zr-based metal–organic frameworks for the recovery of Sb (V) and Sb (III) from mining waste
Authors: Bu Daolu , Yang Hu , Zhang Haibo , Wang Liang , Wang Jiao , Liao Jie 
Published: July 2024

AbstractThe present study investigates the efficacy of newly developed Zr-based metal–organic frameworks, specifically MIP-206, and its amine-modified counterpart, MIP-206-NH2, for the re-covery of antimony (Sb) from both synthetic and actual mining wastewater. Batch method studies were employed to examine the effect of waste media pH, Sb concentration, process kinetics, and the performance of the regeneration solution. MIP-206-NH2 exhibited impressive separation capabilities, achieving 102.18 mg/g and 63.23 mg/g for Sb (V) and Sb (III), respectively. In contrast, the pristine MIP-206 reached maximum values of 26.26 mg/g for Sb (V) and 16.95 mg/g for Sb (III). The separation process was well-described by the Langmuir equation, and the kinetics followed the pseudo-second-order model. Although the amine modification resulted in a decrease in the surface area of MIP-206 from 1345.21 to 1169.86 m2/g, SEM and XRD analyses confirmed that the structural integrity of MIP-206-NH2 remained unchanged. In terms of reusability, MIP-206-NH2 maintained up to 90% of its separation performance over 9 cycles, while MIP-206 demonstrated effectiveness for 7 cycles. The regeneration solution exhibited a capacity of approximately 0.63 mol/L for Sb (V) and 0.71 mol/L for Sb (III). Furthermore, MIP-206 and MIP-206-NH2 demonstrated successful application in selectively separating Sb from real mining wastewater.
Effect of age-related extended high frequency hearing loss on the subjective impressions of dental drill noise
Authors: Yamada Tomomi , Kuwano Sonoko , Ebisu Shigeyuki , Hayashi Mikako 
Published: July 2024

AbstractFear and anxiety among patients are sometimes evoked in dental clinics due to the sound of dental drills. This study aimed to explore the impact of age-related hearing loss in the extended high frequency (EHF) range above 8 kHz on individuals' subjective discomfort towards dental drill noise. After measuring pure-tone audiometric thresholds at both conventional and extended high frequencies, we used a psychoacoustic approach to evaluate subjective impressions of four dental drill sound stimuli, which featured varying frequency components, in 62 participants (aged 12–67 years). We found a significant decrease in hearing sensitivity within the EHF range as age increased, with notable differences in hearing thresholds at 14 kHz between teenage and older adults exceeding 65 dB. Furthermore, significant differences were observed between younger and older (above 40 years) participants in the subjective impressions of dental drill noise, emphasizing age as a critical factor in the perception of high frequency components. Consequently, age may influence the unpleasantness of dental drilling noise. Compared to older individuals, young participants may exhibit increased fear of dental procedures owing to physiological factors. These results underscore the need for age-appropriate noise control strategies in dental clinics to mitigate anxiety and improve patient comfort.
Modelling the lymphatic metastatic progression pathways of OPSCC from multi-institutional datasets
Authors: Ludwig Roman , Schubert Adrian Daniel , Barbatei Dorothea , Bauwens Lauence , Hoffmann Jean-Marc , Werlen Sandrine , Elicin Olgun , Dettmer Matthias , Zrounba Philippe , Pouymayou Bertrand , Balermpas Panagiotis , Grégoire Vincent , Giger Roland , Unkelbach Jan 
Published: July 2024

AbstractThe elective clinical target volume (CTV-N) in oropharyngeal squamous cell carcinoma (OPSCC) is currently based mostly on the prevalence of lymph node metastases in different lymph node levels (LNLs) for a given primary tumor location. We present a probabilistic model for ipsilateral lymphatic spread that can quantify the microscopic nodal involvement risk based on an individual patient’s T-category and clinical involvement of LNLs at diagnosis. We extend a previously published hidden Markov model (HMM), which models the LNLs (I, II, III, IV, V, and VII) as hidden binary random variables (RVs). Each represents a patient’s true state of lymphatic involvement. Clinical involvement at diagnosis represents the observed binary RVs linked to the true state via sensitivity and specificity. The primary tumor and the hidden RVs are connected in a graph. Each edge represents the conditional probability of metastatic spread per abstract time-step, given disease at the edge’s starting node. To learn these probabilities, we draw Markov chain Monte Carlo samples from the likelihood of a dataset (686 OPSCC patients) from three institutions. We compute the model evidence using thermodynamic integration for different graphs to determine which describes the data best.The graph maximizing the model evidence connects the tumor to each LNL and the LNLs I through V in order. It predicts the risk of occult disease in level IV is below 5% if level III is clinically negative, and that the risk of occult disease in level V is below 5% except for advanced T-category (T3 and T4) patients with clinical involvement of levels II, III, and IV. The provided statistical model of nodal involvement in OPSCC patients trained on multi-institutional data may guide the design of clinical trials on volume-deescalated treatment of OPSCC and contribute to more personal guidelines on elective nodal treatment.
The impact of the COVID-19 pandemic on Staphylococcus aureus infections in pediatric patients admitted with community acquired pneumonia
Authors: Ai Ling , Fang Liang , Zhou Chanjuan , Liu Beizhong , Yang Quan , Gong Fang 
Published: July 2024

AbstractThe COVID-19 pandemic has significantly transformed the infection spectrum of various pathogens. This study aimed to evaluate the impact of the COVID-19 pandemic on Staphylococcus aureus (S. aureus) infections among pediatric patients with community acquired pneumonia (CAP). We retrospectively reviewed pediatric CAP admissions before (from 2018 to 2019) and during (from 2020 to 2022) the COVID-19 pandemic. The epidemiology and antimicrobial resistance (AMR) profiles of S. aureus isolates were examined to assess the pandemic’s effect. As a result, a total of 399 pediatric CAP patients with S. aureus infections were included. The positivity rate, gender, and age distribution of patients were similar across both periods. There was a marked reduction in respiratory co-infections with Haemophilus influenzae (H. influenzae) during the COVID-19 pandemic, compared to 2019. Additionally, there were significant changes in the resistance profiles of S. aureus isolates to various antibiotics. Resistance to oxacillin and tetracycline increased, whereas resistance to penicillin, gentamicin, and quinolones decreased. Notably, resistance to erythromycin significantly decreased in methicillin-resistant S. aureus (MRSA) strains. The number of S. aureus isolates, the proportion of viral co-infections, and the number of resistant strains typically peaked seasonally, primarily in the first or fourth quarters of 2018, 2019, and 2021. However, shifts in these patterns were noted in the first quarter of 2020 and the fourth quarter of 2022. These findings reveal that the COVID-19 pandemic has significantly altered the infection dynamics of S. aureus among pediatric CAP patients, as evidenced by changes in respiratory co-infections, AMR patterns, and seasonal trends.
Lifetime cost analysis of concrete barriers and steel guardrails
Authors: Nemati Alireza , Haas Meridian , Torick David , Nazari Shima 
Published: July 2024

AbstractThis study investigates the lifetime costs associated with concrete barriers and steel guardrails. We introduce a cost analysis methodology that incorporates critical factors such as construction costs, maintenance costs, exposure risks during maintenance activities, and the costs imposed to traveling public through the increased traffic and the crash outcomes. We integrate various parameters including economic factors, road geometry, general weather condition, and traffic mix to estimate a location-dependent cost for each type of barrier accurately. A software tool, named CalBarrier, was developed during this study to carry out the calculations and the comparison of lifetime cost of aforementioned barriers. An inherent strength of this research is its reliance on recent real data extracted from various databases of California Department of Transportation (Caltrans), ensuring precision and relevance in accounting for various influential factors. Drawing insights from Caltrans practices and interviews with their personnel, this study emphasizes the intricate decision-making process involved in mitigating safety risks and reducing operational expenses. Although our data originates from California, the methodology for life cycle cost analysis, and our software are applicable for regions with different socio-economic conditions by deploying user input costs, making our findings a valuable resource for other areas facing comparable challenges.
Empagliflozin rescues pro-arrhythmic and Ca2+ homeostatic effects of transverse aortic constriction in intact murine hearts
Authors: Wen Qiang , Zhang Rui , Ye Kejun , Yang Jun , Shi Hangchuan , Liu Zhu , Li Yangpeng , Liu Ting , Zhang Shiyu , Chen Wanpei , Wu Jingjing , Liu Weichao , Tan Xiaoqiu , Lei Ming , Huang Christopher L.-H. , Ou Xianhong 
Published: July 2024

AbstractWe explored physiological effects of the sodium-glucose co-transporter-2 inhibitor empagliflozin on intact experimentally hypertrophic murine hearts following transverse aortic constriction (TAC). Postoperative drug (2–6 weeks) challenge resulted in reduced late Na+ currents, and increased phosphorylated (p-)CaMK-II and Nav1.5 but not total (t)-CaMK-II, and Na+/Ca2+ exchanger expression, confirming previous cardiomyocyte-level reports. It rescued TAC-induced reductions in echocardiographic ejection fraction and fractional shortening, and diastolic anterior and posterior wall thickening. Dual voltage- and Ca2+-optical mapping of Langendorff-perfused hearts demonstrated that empagliflozin rescued TAC-induced increases in action potential durations at 80% recovery (APD80), Ca2+ transient peak signals and durations at 80% recovery (CaTD80), times to peak Ca2+ (TTP100) and Ca2+ decay constants (Decay30–90) during regular 10-Hz stimulation, and Ca2+ transient alternans with shortening cycle length. Isoproterenol shortened APD80 in sham-operated and TAC-only hearts, shortening CaTD80 and Decay30–90 but sparing TTP100 and Ca2+ transient alternans in all groups. All groups showed similar APD80, and TAC-only hearts showed greater CaTD80, heterogeneities following isoproterenol challenge. Empagliflozin abolished or reduced ventricular tachycardia and premature ventricular contractions and associated re-entrant conduction patterns, in isoproterenol-challenged TAC-operated hearts following successive burst pacing episodes. Empagliflozin thus rescues TAC-induced ventricular hypertrophy and systolic functional, Ca2+ homeostatic, and pro-arrhythmogenic changes in intact hearts.
Detection and quantification of C-terminally tagged proteins by in-gel fluorescence
Authors: Fuchs Adrian C. D. 
Published: July 2024

AbstractThe analysis of recombinant proteins in complex solutions is often accomplished with tag-specific antibodies in western blots. Recently, I introduced an antibody-free alternative wherein tagged proteins are visualized directly within polyacrylamide gels. For this, I used the protein ligase Connectase to selectively attach fluorophores to target proteins possessing an N-terminal recognition sequence. In this study, I extend this methodology to encompass the detection and quantification of C-terminally tagged proteins. Similar to the N-terminal labeling method, this adapted procedure offers increased speed, heightened sensitivity, and an improved signal-to-noise ratio when compared to western blots. It also eliminates the need for sample-specific optimization, enables more consistent and precise quantifications, and uses freely available reagents. This study broadens the applicability of in-gel fluorescence detection methods and thereby facilitates research on recombinant proteins.
Peroxiredoxin 1 inhibits streptozotocin-induced Alzheimer’s disease-like pathology in hippocampal neuronal cells via the blocking of Ca2+/Calpain/Cdk5-mediated mitochondrial fragmentation
Authors: Park Junghyung , Won Jinyoung , Yang Eunyeoung , Seo Jincheol , Cho Jiyeon , Seong Jung Bae , Yeo Hyeon-Gu , Kim Keonwoo , Kim Yu Gyeong , Kim Minji , Jeon Chang-Yeop , Lim Kyung Seob , Lee Dong-Seok , Lee Youngjeon 
Published: July 2024

AbstractOxidative stress plays an essential role in the progression of Alzheimer’s disease (AD), the most common age-related neurodegenerative disorder. Streptozotocin (STZ)-induced abnormal brain insulin signaling and oxidative stress play crucial roles in the progression of Alzheimer’s disease (AD)-like pathology. Peroxiredoxins (Prxs) are associated with protection from neuronal death induced by oxidative stress. However, the molecular mechanisms underlying Prxs on STZ-induced progression of AD in the hippocampal neurons are not yet fully understood. Here, we evaluated whether Peroxiredoxin 1 (Prx1) affects STZ-induced AD-like pathology and cellular toxicity. Prx1 expression was increased by STZ treatment in the hippocampus cell line, HT-22 cells. We evaluated whether Prx1 affects STZ-induced HT-22 cells using overexpression. Prx1 successfully protected the forms of STZ-induced AD-like pathology, such as neuronal apoptosis, synaptic loss, and tau phosphorylation. Moreover, Prx1 suppressed the STZ-induced increase of mitochondrial dysfunction and fragmentation by down-regulating Drp1 phosphorylation and mitochondrial location. Prx1 plays a role in an upstream signal pathway of Drp1 phosphorylation, cyclin-dependent kinase 5 (Cdk5) by inhibiting the STZ-induced conversion of p35 to p25. We found that STZ-induced of intracellular Ca2+ accumulation was an important modulator of AD-like pathology progression by regulating Ca2+-mediated Calpain activation, and Prx1 down-regulated STZ-induced intracellular Ca2+ accumulation and Ca2+-mediated Calpain activation. Finally, we identified that Prx1 antioxidant capacity affected Ca2+/Calpain/Cdk5-mediated AD-like pathology progress. Therefore, these findings demonstrated that Prx1 is a key factor in STZ-induced hippocampal neuronal death through inhibition of Ca2+/Calpain/Cdk5-mediated mitochondrial dysfunction by protecting against oxidative stress.
On comparative analysis of a two dimensional star gold structure via regression models
Authors: Hanif Muhammad Farhan , Mahmood Hasan , Ahmad Shahbaz , Fiidow Mohamed Abubakar 
Published: July 2024

AbstractIn this research, the star gold structure with beta graphene is thoroughly examined. We mainly focus on computing degree-based topological indices, which provide information about the network’s connectivity and complexity as well as structural features. In addition, we compute an entropy measure to represent the uncertainty, information richness, and degree of unpredictability in the network. Furthermore, this study explores the relationships between topological descriptors and entropy using regression models that are logarithmic, linear, and quadratic. By merging these regression models, we uncover hidden patterns and understand the underlying ideas governing the network’s behaviour. Our findings shed light on the connection between topological indices and entropy. This work improves our understanding of star gold structure dynamics and provides a visual framework for interpreting their behaviour.
A comprehensive health assessment approach using ensemble deep learning model for remote patient monitoring with IoT
Authors: R Gayathri , S Maheswari , Mathivanan Sandeep Kumar , Shivahare Basu Dev , Chandan Radha Raman , Shah Mohd Asif 
Published: July 2024

AbstractThe goal of this research is to create an ensemble deep learning model for Internet of Things (IoT) applications that specifically target remote patient monitoring (RPM) by integrating long short-term memory (LSTM) networks and convolutional neural networks (CNN). The work tackles important RPM concerns such early health issue diagnosis and accurate real-time physiological data collection and analysis using wearable IoT devices. By assessing important health factors like heart rate, blood pressure, pulse, temperature, activity level, weight management, respiration rate, medication adherence, sleep patterns, and oxygen levels, the suggested Remote Patient Monitor Model (RPMM) attains a noteworthy accuracy of 97.23%. The model's capacity to identify spatial and temporal relationships in health data is improved by novel techniques such as the use of CNN for spatial analysis and feature extraction and LSTM for temporal sequence modeling. Early intervention is made easier by this synergistic approach, which enhances trend identification and anomaly detection in vital signs. A variety of datasets are used to validate the model's robustness, highlighting its efficacy in remote patient care. This study shows how using ensemble models' advantages might improve health monitoring's precision and promptness, which would eventually benefit patients and ease the burden on healthcare systems.
Evolving dispersal ability causes rapid adaptive radiation
Authors: Yamasaki Takeshi , Kobayashi Yutaka 
Published: July 2024

AbstractDespite a long history of research since Darwin, the mechanism underlying rapid adaptive radiation remains poorly understood. All theories constructed to date require special assumptions, so none can comprehensively explain actual cases found in wide-ranging taxonomic groups. Here, we propose a simple theoretical solution to this problem. Namely, we extend the classical archipelago model of adaptive radiation into a more realistic model by adding one assumption, namely, the evolvability of dispersal ability, which is well supported empirically. Our individual-based simulations with evolvable dispersal ability showed that environmental heterogeneity among islands (or island-like habitats) led to an evolutionary decrease in dispersal ability. However, when islands are rather evenly distributed, as is often the case in actual archipelagos where adaptive radiation has been reported, the decline in dispersal ability that began in some island populations was quickly halted by the continuous influx of immigrants from other islands. The process of reduction in dispersal ability in these island populations was resumed almost synchronously when the dispersal ability began to decrease on the final island, which had maintained high dispersal ability and continued to release migrants for the longest duration. Then, a rapid loss of dispersal ability followed in all island populations. In short, the frequent simultaneous evolution of multiple allopatric incipient species was an inevitable consequence of the properties of ordinary archipelagos in our simulations. This study strongly suggests that the seemingly complex process of rapid radiation is driven by a simple mechanism of evolutionary reduction in dispersal ability.
Stable chalcogenide Ge–Sb–Te heterostructures with minimal Ge segregation
Authors: Bertelli Marco , Sfuncia Gianfranco , De Simone Sara , Diaz Fattorini Adriano , Calvi Sabrina , Mussi Valentina , Arciprete Fabrizio , Mio Antonio M. , Calarco Raffaella , Longo Massimo 
Published: July 2024

AbstractMatching of various chalcogenide films shows the advantage of delivering multilayer heterostructures whose physical properties can be tuned with respect to the ones of the constituent single films. In this work, (Ge–Sb–Te)-based heterostructures were deposited by radio frequency sputtering on Si(100) substrates and annealed up to 400 °C. The as-deposited and annealed samples were studied by means of X-ray fluorescence, X-ray diffraction, scanning transmission electron microscopy, electron energy loss spectroscopy and Raman spectroscopy. The heterostructures, combining thermally stable thin layers (i. e. Ge-rich Ge5.5Sb2Te5, Ge) and films exhibiting fast switching dynamics (i. e. Sb2Te3), show, on the one side, higher crystallization-onset temperatures than the standard Ge2Sb2Te5 alloy and, on the other side, none to minimal Ge-segregation.