bluuebunny/crossref_metadata_2025_split huggingface dataset:
Differential patterns of blood oxygenation in the prefrontal cortex between patients with methamphetamine-induced psychosis and schizophrenia
Authors: Yamamuro Kazuhiko , Makinodan Manabu , Kimoto Sohei , Kishimoto Naoko , Morimoto Tsubasa , Toritsuka Michihiro , Matsuoka Kiwamu , Takebayashi Yoshihiro , Takata Tomoyo , Takahashi Masato , Tanimura Yoshinori , Nishihata Yosuke , Matsuda Yasuhiro , Ota Toyosaku , Yoshino Hiroki , Iida Junzo , Kishimoto Toshifumi 
Published: July 2015

AbstractDespite some slight differences in symptomatology, differential diagnosis of methamphetamine-induced psychosis (MAP) versus schizophrenia can be challenging because both disorders present a large overlap in their clinical symptoms. However, a recent study has shown that near-infrared spectroscopy (NIRS) performed during a cognitive task can be a powerful tool to differentiate between these two disorders. Here, we evaluated verbal fluency task performance during NIRS in 15 patients diagnosed with MAP and 19 with schizophrenia matched for age and sex. We used prefrontal probes and a 24-channel NIRS machine to measure the relative concentrations of oxyhaemoglobin every 0.1 s during the task. For each patient, the neurocognitive function and clinical psychopathology were evaluated using the Positive and Negative Symptom Scale (PANSS) and the Brief Assessment of Cognition in Schizophrenia (BACS). Oxyhaemoglobin changes in the prefrontal cortex were significantly higher in the MAP group compared to those in the schizophrenia group, particularly in the right dorsolateral prefrontal cortex. In contrast, we found no significant difference in PANSS and BACS scores. Our findings suggest that NIRS measurement could be applied to differentiate patients with MAP from those with schizophrenia, even in cases where clinical symptoms are similar.
Maximum temperature accounts for annual soil CO2 efflux in temperate forests of Northern China
Authors: Zhou Zhiyong , Xu Meili , Kang Fengfeng , Jianxin Sun Osbert 
Published: July 2015

AbstractIt will help understand the representation legality of soil temperature to explore the correlations of soil respiration with variant properties of soil temperature. Soil temperature at 10 cm depth was hourly logged through twelve months. Basing on the measured soil temperature, soil respiration at different temporal scales were calculated using empirical functions for temperate forests. On monthly scale, soil respiration significantly correlated with maximum, minimum, mean and accumulated effective soil temperatures. Annual soil respiration varied from 409 g C m−2in coniferous forest to 570 g C m−2in mixed forest and to 692 g C m−2in broadleaved forest and was markedly explained by mean soil temperatures of the warmest day, July and summer, separately. These three soil temperatures reflected the maximum values on diurnal, monthly and annual scales. In accordance with their higher temperatures, summer soil respiration accounted for 51% of annual soil respiration across forest types and broadleaved forest also had higher soil organic carbon content (SOC) and soil microbial biomass carbon content (SMBC), but a lower contribution of SMBC to SOC. This added proof to the findings that maximum soil temperature may accelerate the transformation of SOC to CO2-C via stimulating activities of soil microorganisms.
Ammonium sorption and ammonia inhibition of nitrite-oxidizing bacteria explain contrasting soil N2O production
Authors: Venterea Rodney T. , Clough Timothy J. , Coulter Jeffrey A. , Breuillin-Sessoms Florence , Wang Ping , Sadowsky Michael J. 
Published: July 2015

AbstractBetter understanding of process controls over nitrous oxide (N2O) production in urine-impacted ‘hot spots’ and fertilizer bands is needed to improve mitigation strategies and emission models. Following amendment with bovine (Bos taurus) urine (Bu) or urea (Ur), we measured inorganic N, pH, N2O and genes associated with nitrification in two soils (‘L’ and ‘W’) having similar texture, pH, C and C/N ratio. Solution-phase ammonia (slNH3) was also calculated accounting for non-linear ammonium (NH4+) sorption capacities (ASC). Soil W displayed greater nitrification rates and nitrate (NO3−) levels than soil L, but was more resistant to nitrite (NO2−) accumulation and produced two to ten times less N2O than soil L. Genes associated with NO2− oxidation (nxrA) increased substantially in soil W but remained static in soil L. Soil NO2− was strongly correlated with N2O production and cumulative (c-) slNH3 explained 87% of the variance in c-NO2−. Differences between soils were explained by greater slNH3 in soil L which inhibited NO2− oxidization leading to greater NO2− levels and N2O production. This is the first study to correlate the dynamics of soil slNH3, NO2−, N2O and nitrifier genes and the first to show how ASC can regulate NO2− levels and N2O production.
Active charge state control of single NV centres in diamond by in-plane Al-Schottky junctions
Authors: Schreyvogel C. , Polyakov V. , Wunderlich R. , Meijer J. , Nebel C. E. 
Published: July 2015

AbstractIn this paper, we demonstrate an active control of the charge state of a single nitrogen-vacancy (NV) centre by using in-plane Schottky-diode geometries with aluminium on hydrogen-terminated diamond surface. A switching between NV+, NV0 and NV− can be performed with the Al-gates which apply electric fields in the hole depletion region of the Schottky junction that induces a band bending modulation, thereby shifting the Fermi-level over NV charge transition levels. We simulated the in-plane band structure of the Schottky junction with the Software ATLAS by solving the drift-diffusion model and the Poisson-equation self-consistently. We simulated the IV-characteristics, calculated the width of the hole depletion region, the position of the Fermi-level intersection with the NV charge transition levels for different reverse bias voltages applied on the Al-gate. We can show that the field-induced band bending modulation in the depletion region causes a shifting of the Fermi-level over NV charge transition levels in such a way that the charge state of a single NV centre and thus its electrical and optical properties is tuned. In addition, the NV centre should be approx. 1–2 μm away from the Al-edge in order to be switched with moderate bias voltages.
Thermodynamic explanation of the universal correlation between oxygen evolution activity and corrosion of oxide catalysts
Authors: Binninger Tobias , Mohamed Rhiyaad , Waltar Kay , Fabbri Emiliana , Levecque Pieter , Kötz Rüdiger , Schmidt Thomas J. 
Published: July 2015

AbstractIn recent years, the oxygen evolution reaction (OER) has attracted increased research interest due to its crucial role in electrochemical energy conversion devices for renewable energy applications. The vast majority of OER catalyst materials investigated are metal oxides of various compositions. The experimental results obtained on such materials strongly suggest the existence of a fundamental and universal correlation between the oxygen evolution activity and the corrosion of metal oxides. This corrosion manifests itself in structural changes and/or dissolution of the material. We prove from basic thermodynamic considerations that any metal oxide must become unstable under oxygen evolution conditions irrespective of the pH value. The reason is the thermodynamic instability of the oxygen anion in the metal oxide lattice. Our findings explain many of the experimentally observed corrosion phenomena on different metal oxide OER catalysts.
Serum and hair zinc levels in breast cancer: a meta-analysis
Authors: Wu Xiujuan , Tang Jing , Xie Mingjun 
Published: July 2015

AbstractMany studies have investigated the association between serum/hair zinc levels and breast cancer, but the results were inconsistent. To compare the serum and hair zinc levels in women with breast cancer and controls, we conducted a systematic literature search of PubMed, Web of Science, Cochrane Library and Embase to identify relevant studies with publication dates up through November 2014. Based on a random effects model, summary standard mean differences (SMDs) and the corresponding 95% confidence intervals (CIs) were used to compare the serum and hair zinc levels in women with breast cancer and controls. Fourteen studies that investigated serum zinc levels and seven studies that assessed hair zinc levels were included. Our study observed no difference in serum zinc levels between breast cancer cases and controls (SMD (95%CI): −0.65[−1.42,0.13]). However, we determined that hair zinc levels were lower in women with breast cancer compared with those of controls (SMD (95%CI): −1.99[−3.46, −0.52]). In conclusion, this study was the first to provide evidence that hair zinc levels in female breast cancer patients are lower than in controls; however, there was no significant difference in serum zinc levels between female breast cancer patients and controls.
High accuracy determination of the thermal properties of supported 2D materials
Authors: Judek Jarosław , Gertych Arkadiusz P. , Świniarski Michał , Łapińska Anna , Dużyńska Anna , Zdrojek Mariusz 
Published: July 2015

AbstractWe present a novel approach for the simultaneous determination of the thermal conductivity κ and the total interface conductance g of supported 2D materials by the enhanced opto-thermal method. We harness the property of the Gaussian laser beam that acts as a heat source, whose size can easily and precisely be controlled. The experimental data for multi-layer graphene and MoS2 flakes are supplemented using numerical simulations of the heat distribution in the Si/SiO2/2D material system. The procedure of κ and g extraction is tested in a statistical approach, demonstrating the high accuracy and repeatability of our method.
Down-regulation of EPHX2 gene transcription by Sp1 under high-glucose conditions
Authors: Oguro Ami , Oida Shoko , Imaoka Susumu 
Published: July 2015

sEH (soluble epoxide hydrolase), which is encoded by the EPHX2 gene, regulates the actions of bioactive lipids, EETs (epoxyeicosatrienoic acids). Previously, we found that high-glucose-induced oxidative stress suppressed sEH levels in a hepatocarcinoma cell line (Hep3B) and sEH was decreased in streptozotocin-induced diabetic mice in vivo. In the present study, we investigated the regulatory mechanisms underlying EPHX2 transcriptional suppression under high-glucose conditions. The decrease in sEH was prevented by an Sp1 (specificity protein 1) inhibitor, mithramycin A, and overexpression or knockdown of Sp1 revealed that Sp1 suppressively regulated sEH expression, in contrast with the general role of Sp1 on transcriptional activation. In addition, we found that AP2α (activating protein 2α) promoted EPHX2 transcription. The nuclear transport of Sp1, but not that of AP2α, was increased under high glucose concomitantly with the decrease in sEH. Within the EPHX2 promoter −56/+32, five Sp1-binding sites were identified, and the mutation of each of these sites showed that the first one (SP1_1) was important in both suppression by Sp1 and activation by AP2α. Furthermore, overexpression of Sp1 diminished the binding of AP2α by DNA-affinity precipitation assay and ChIP, suggesting competition between Sp1 and AP2α on the EPHX2 promoter. These findings provide novel insights into the role of Sp1 in transcriptional suppression, which may be applicable to the transcriptional regulation of other genes.
Radiographic Analysis of the Sacropelvic Parameters of the Spine and Their Correlation in Normal Asymptomatic Subjects
Authors: Sudhir G. , Acharya Shankar , Kalra K.L. , Chahal Rupinder 
Published: July 2015

Study Design Cross-sectional study. Objective Sacropelvic parameters in various spine and hip disorders have been published in various studies. We aimed to study the normal sacropelvic parameters and curvatures of the spine and their correlation in asymptomatic Indian adults in relation to variations in sex and age. Methods The study included 101 asymptomatic adults (50 men and 51 women with an average age of 47.16 and 48.59 years, respectively). For each subject, the thoracic kyphosis (TK), lumbar lordosis (LL), pelvic incidence (PI), pelvic tilt (PT), and sacral slope (SS) were measured from standing lateral radiographs. After stratification of the group by sex and age with a cutoff of 50 years, descriptive, correlation, and regression analysis were performed using SPSS software. Results The average PI, SS, PT, LL, and TK values were 55.48 (±5.31), 35.99 (±7.53), 17.97 (±7.16), 48.84 (±9.82), and 32.55 (±10.92), respectively. No statistically significant difference was observed in these values with regards to sex and age < 50 years and > 50 years but the pelvic incidence was found to be higher in women. A positive correlation between the PI and SS and a negative correlation between the SS and PT was observed. A positive correlation between the TK and LL was found in subjects > 50 years. Simple and multiple regression analyses were also performed for different groups. Conclusion The current study is the first of asymptomatic Indian adults and provides invaluable information to the clinicians about the normal range of sacropelvic and spinopelvic parameters, which is useful to plan spinal deformity corrections and to evaluate pathologic conditions associated with abnormal angular values.
En Bloc Resection of Solitary Functional Secreting Spinal Metastasis
Authors: Goodwin C. Rory , Clarke Michelle J. , Gokaslan Ziya L. , Fisher Charles , Laufer Ilya , Weber Michael H. , Sciubba Daniel M. 
Published: July 2015

Study Design Literature review. Objective Functional secretory tumors metastatic to the spine can secrete hormones, growth factors, peptides, and/or molecules into the systemic circulation that cause distinct syndromes, clinically symptomatic effects, and/or additional morbidity and mortality. En bloc resection has a limited role in metastatic spine disease due to the current paradigm that systemic burden usually determines morbidity and mortality. Our objective is to review the literature for studies focused on en bloc resection of functionally active spinal metastasis as the primary indication. Methods A review of the PubMed literature was performed to identify studies focused on functional secreting metastatic tumors to the spinal column. We identified five cases of patients undergoing en bloc resection of spinal metastases from functional secreting tumors. Results The primary histologies of these spinal metastases were pheochromocytoma, carcinoid tumor, choriocarcinoma, and a fibroblast growth factor 23–secreting phosphaturic mesenchymal tumor. Although studies of en bloc resection for these rare tumor subtypes are confined to case reports, this surgical treatment option resulted in metabolic cures and decreased clinical symptoms postoperatively for patients diagnosed with solitary functional secretory spinal metastasis. Conclusion Although the ability to formulate comprehensive conclusions is limited, case reports demonstrate that en bloc resection may be considered as a potential surgical option for the treatment of patients diagnosed with solitary functional secretory spinal metastatic tumors. Future prospective investigations into clinical outcomes should be conducted comparing intralesional resection and en bloc resection for patients diagnosed with solitary functional secretory spinal metastasis.
Intrawound Vancomycin Powder for Spine Tumor Surgery
Authors: Okafor Richard , Molinari William , Molinari Robert , Mesfin Addisu 
Published: July 2015

Study Design Retrospective evaluation of prospectively collected data. Objective To evaluate infection rates following intrawound vancomycin powder application during spine tumor surgery. Methods Patients ≥18 years old undergoing spine tumor surgery and receiving intrawound vancomycin powder at a single center between January 2008 and January 2015 were enrolled. Patient demographics (age, sex, body mass index [BMI]), tumor type (metastatic, primary) and location, surgical data (estimated blood loss [EBL], levels fused, type of decompression, length of surgery and hospitalization, discharge status from hospital), radiation therapy use, and infection rates (surgery to a minimum of 30 days postoperative) were evaluated. Results Forty patients (46 procedures) undergoing spine tumor surgery and intrawound vancomycin powder application were identified. Five were excluded because of death less than 30 days postoperatively, and 35 patients (41 procedures) were enrolled: 11 women and 24 men with an average age of 61.4 years (range 19 to 92) and average BMI of 27.3 (range 17.4 to 36.8). Three cases were primary spine tumors. Five were hematologic malignancies, and 27 were metastatic cancers. Twenty-one tumors were in the thoracic spine, 12 in the lumbar spine, and 8 in the cervical spine. Average EBL was 899 mL (range 25 to 3,500), average length of surgery was 241 minutes (range 78 to 495), and average hospital stay was 15.1 days (range 3 to 49). Two culture-proven infections ( Staphylococcus aureus, Enterobacter cloacae) were noted in 41 procedures (4.9%). Ten patients (28.6%) had preoperative radiation only; 14 (40%) had postoperative radiation only, 5 (14.3%) had both preoperative and postoperative radiation, and 6 (17.1%) had no radiation. There were no associations between radiation treatment and postsurgical infections ( p = 0.19). Conclusion In this first study evaluating intrawound vancomycin powder for spine tumor surgery, we report an infection rate of 4.9%. We found no correlations between radiation treatment and postsurgical infections.
Population Genetic Structure of Southern Flounder Inferred from Multilocus DNA Profiles
Authors: Wang Verena H. , McCartney Michael A. , Scharf Frederick S. 
Published: July 2015

Abstract
Determination of stock structure is an important component of fisheries management; incorporation of molecular genetic data is an effective method for assessing differentiation among putative populations. We examined genetic variation in Southern Flounder Paralichthys lethostigma within and between the U.S. South Atlantic and Gulf of Mexico basins to improve our understanding of the scale of population structure in this wide-ranging species. Analysis of amplified fragment length polymorphism (AFLP) fingerprints and analysis of mitochondrial DNA (mtDNA) control region sequences found clear divergence between ocean basins. Based on mtDNA sequences, no genetic differentiation was detected within the U.S. South Atlantic at spatial scales that were broad (among states: North Carolina, South Carolina, Georgia, and Florida) or fine (among estuarine regions within North Carolina). Increased genetic resolution was observed with AFLP fingerprint data, and we found significant subdivision between nearly all Southern Flounder geographic populations, suggesting the presence of finer-scale genetic population structure within the U.S. South Atlantic. However, AFLP genetic cluster analysis also revealed evidence for a high degree of mixing within the Atlantic basin; patterns of variation, which included genetic similarity between South Carolina and Gulf of Mexico samples, were not aligned closely with geography. We examined the partitioning of genetic variation among groups by using analyses of molecular variance and found no evidence that North Carolina Southern Flounder, which are managed on the state level as a unit stock, are differentiated from the remainder of U.S. South Atlantic Southern Flounder. Our findings indicate only weak structure and the potential for basinwide mixing among Atlantic Southern Flounder, suggesting that cooperation among U.S. South Atlantic states will be essential for the effective assessment of stock dynamics and future management plans.
Karect: accurate correction of substitution, insertion and deletion errors for next-generation sequencing data
Authors: Allam Amin , Kalnis Panos , Solovyev Victor 
Published: July 2015

Abstract
Motivation: Next-generation sequencing generates large amounts of data affected by errors in the form of substitutions, insertions or deletions of bases. Error correction based on the high-coverage information, typically improves de novo assembly. Most existing tools can correct substitution errors only; some support insertions and deletions, but accuracy in many cases is low.
Results: We present Karect, a novel error correction technique based on multiple alignment. Our approach supports substitution, insertion and deletion errors. It can handle non-uniform coverage as well as moderately covered areas of the sequenced genome. Experiments with data from Illumina, 454 FLX and Ion Torrent sequencing machines demonstrate that Karect is more accurate than previous methods, both in terms of correcting individual-bases errors (up to 10% increase in accuracy gain) and post de novo assembly quality (up to 10% increase in NGA50). We also introduce an improved framework for evaluating the quality of error correction.
Availability and implementation: Karect is available at: http://aminallam.github.io/karect.
Contact: amin.allam@kaust.edu.sa
Supplementary information: Supplementary data are available at Bioinformatics online.
Readability assessment of patient-provider electronic messages in a primary care setting
Authors: Mirsky Jacob B , Tieu Lina , Lyles Courtney , Sarkar Urmimala 
Published: July 2015

Abstract
Background The high prevalence of limited health literacy among patients threatens the success of secure electronic messaging between patients from diverse populations and their providers.
Objective The purpose of this study is to generate hypotheses about the readability of patient and provider electronic messages.
Methods We collected 31 patient-provider e-mail exchanges ( n = 119 total messages) from a safety-net primary care clinic. We compared the messages’ mean word count and Flesch-Kincaid Grade Levels (FKGLs), calculated the frequency of provider messages below an FKGL = 8, and assessed readability concordance between patients’ and providers’ messages.
Results Patients used more words in their initial e-mails compared to providers, but the FKGLs were similar, and 68% of provider messages were written below an FKGL = 8. Of 31 exchanges, 9 (29%) contained at least one patient message with an FKGL &gt; 3 grade levels lower than the corresponding provider message(s).
Conclusion Our study demonstrates that most providers are able to respond to patient electronic messages with a matching reading level.