bluuebunny/crossref_metadata_2025_split huggingface dataset:
A comprehensive collection of systems biology data characterizing the host response to viral infection
Authors: Aevermann Brian D. , Pickett Brett E. , Kumar Sanjeev , Klem Edward B. , Agnihothram Sudhakar , Askovich Peter S. , Bankhead Armand , Bolles Meagen , Carter Victoria , Chang Jean , Clauss Therese R.W. , Dash Pradyot , Diercks Alan H. , Eisfeld Amie J. , Ellis Amy , Fan Shufang , Ferris Martin T. , Gralinski Lisa E. , Green Richard R. , Gritsenko Marina A. , Hatta Masato , Heegel Robert A. , Jacobs Jon M. , Jeng Sophia , Josset Laurence , Kaiser Shari M. , Kelly Sara , Law G. Lynn , Li Chengjun , Li Jiangning , Long Casey , Luna Maria L. , Matzke Melissa , McDermott Jason , Menachery Vineet , Metz Thomas O. , Mitchell Hugh , Monroe Matthew E. , Navarro Garnet , Neumann Gabriele , Podyminogin Rebecca L. , Purvine Samuel O. , Rosenberger Carrie M. , Sanders Catherine J. , Schepmoes Athena A. , Shukla Anil K. , Sims Amy , Sova Pavel , Tam Vincent C. , Tchitchek Nicolas , Thomas Paul G. , Tilton Susan C. , Totura Allison , Wang Jing , Webb-Robertson Bobbie-Jo , Wen Ji , Weiss Jeffrey M. , Yang Feng , Yount Boyd , Zhang Qibin , McWeeney Shannon , Smith Richard D. , Waters Katrina M. , Kawaoka Yoshihiro , Baric Ralph , Aderem Alan , Katze Michael G. , Scheuermann Richard H. 
Published: October 2014

AbstractThe Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vitro host responses to viral infections. Human pathogens in the Orthomyxoviridae and Coronaviridae families, especially pandemic H1N1 and avian H5N1 influenza A viruses and severe acute respiratory syndrome coronavirus (SARS-CoV), were investigated. Study validation was demonstrated via experimental quality control measures and meta-analysis of independent experiments performed under similar conditions. Primary assay results are archived at the GEO and PeptideAtlas public repositories, while processed statistical results together with standardized metadata are publically available at the Influenza Research Database (www.fludb.org) and the Virus Pathogen Resource (www.viprbrc.org). By comparing data from mutant versus wild-type virus and host strains, RNA versus protein differential expression, and infection with genetically similar strains, these data can be used to further investigate genetic and physiological determinants of host responses to viral infection.
DNA methylation temporal profiling following peripheral versus central nervous system axotomy
Authors: Lindner Ricco , Puttagunta Radhika , Nguyen Tuan , Di Giovanni Simone 
Published: October 2014

AbstractThe regulatory mechanisms responsible for the gene expression pattern associated with axotomy-dependent signaling affecting the neuronal phenotype, including the axonal regenerative program, remain unclear. To further this understanding, we recently performed DNA methylation temporal profiling in lumbar dorsal root ganglia (DRG) after axotomy of the central spinal (non-regenerating) and of the peripheral sciatic nerve (regenerating) axonal branches. DNA methylation microarrays for mouse gene promoters and CpG islands (Roche/NimbleGen) were employed after immunoprecipitation of 5-methylcytosine-DNA. Here we provide a detailed data descriptor of this DNA methylation dataset, which allows in depth evaluation of the experimental design, assessment of data reproducibility and a full interactive operator-based systematic data analysis. In fact, we offer a methylation ‘hit’ scoring map of the whole microarray data in a workable spreadsheet that allows data sorting by genes, conditions or hits of interests that is ready for functional gene annotation and classification. This dataset allows investigators bioinformatic comparison to other epigenetic and gene expression datasets and further experimental characterization of the role of DNA methylation in axotomy-dependent pathways.
Transformation magneto-statics and illusions for magnets
Authors: Sun Fei , He Sailing 
Published: October 2014

AbstractBased on the form-invariant of Maxwell's equations under coordinate transformations, we extend the theory of transformation optics to transformation magneto-statics, which can design magnets through coordinate transformations. Some novel DC magnetic field illusions created by magnets (e.g. rescaling magnets, cancelling magnets and overlapping magnets) are designed and verified by numerical simulations. Our research will open a new door to designing magnets and controlling DC magnetic fields.
A green approach to the synthesis of novel “Desert rose stone”-like nanobiocatalytic system with excellent enzyme activity and stability
Authors: Wang Min , Bao Wen-Jing , Wang Jiong , Wang Kang , Xu Jing-Juan , Chen Hong-Yuan , Xia Xing-Hua 
Published: October 2014

Abstract3D hierarchical layer double hydroxides (LDHs) have attracted extensive interest due to their unique electronic and catalytic properties. Unfortunately, the existing preparation methods require high temperature or toxic organic compounds, which limits the applications of the 3D hierarchical LDHs in biocatalysis and biomedicine. Herein, we present a green strategy to synthesize “Desert Rose Stone”-like Mg-Al-CO3 LDH nanoflowers in situ deposited on aluminum substrates via a coprecipitation method using atmospheric carbon dioxide. Using this method, we construct a novel “Desert Rose Stone”-like nanobiocatalytic system by using HRP as the model enzyme. Compared with the free HRP, the HRP/Mg-Al-LDH nanobiocatalytic system exhibits higher catalytic activity and stability. A smaller apparent Michaelis-Menten constant (0.16 mM) of this system suggests that the encapsulated HRP shows higher affinity towards H2O2.
Distribution, Stock Composition and Timing, and Tagging Response of Wild Chinook Salmon Returning to a Large, Free‐Flowing River Basin
Authors: Eiler John H. , Masuda Michele M. , Spencer Ted R. , Driscoll Richard J. , Schreck Carl B. 
Published: October 2014

AbstractChinook Salmon Oncorhynchus tshawytscha returns to the Yukon River basin have declined dramatically since the late 1990s, and detailed information on the spawning distribution, stock structure, and stock timing is needed to better manage the run and facilitate conservation efforts. A total of 2,860 fish were radio‐tagged in the lower basin during 2002–2004 and tracked upriver. Fish traveled to spawning areas throughout the basin, ranging from several hundred to over 3,000 km from the tagging site. Similar distribution patterns were observed across years, suggesting that the major components of the run were identified. Daily and seasonal composition estimates were calculated for the component stocks. The run was dominated by two regional components comprising over 70% of the return. Substantially fewer fish returned to other areas, ranging from 2% to 9% of the return, but their collective contribution was appreciable. Most regional components consisted of several principal stocks and a number of small, spatially isolated populations. Regional and stock composition estimates were similar across years even though differences in run abundance were reported, suggesting that the differences in abundance were not related to regional or stock‐specific variability. Run timing was relatively compressed compared with that in rivers in the southern portion of the species’ range. Most stocks passed through the lower river over a 6‐week period, ranging in duration from 16 to 38 d. Run timing was similar for middle‐ and upper‐basin stocks, limiting the use of timing information for management. The lower‐basin stocks were primarily later‐run fish. Although differences were observed, there was general agreement between our composition and timing estimates and those from other assessment projects within the basin, suggesting that the telemetry‐based estimates provided a plausible approximation of the return. However, the short duration of the run, complex stock structure, and similar stock timing complicate management of Yukon River returns.Received March 5, 2014; accepted August 27, 2014
Spain Discovers the Mass
Authors: Kreitner Kenneth 
Published: October 2014

ABSTRACTSpain was a latecomer to the cyclic Mass, which began to develop there in the 1490s or late 1480s. A number of different strands in this process – free single movements, mix-and-match Masses, ferial Masses, imports, three-voice Masses, Missae sine nomine and the six cycles of Francisco de Peñalosa – can usefully be separated and laid at least tentatively onto a chronological framework on the basis of manuscript date and composer biography. The surviving evidence seems to show a tradition that arose with particular energy in the decade or so after 1500 and reached maturity within a single generation.
Measurement precision of body composition variables in elite wheelchair athletes, using dual‐energy X‐ray absorptiometry
Authors: Keil Mhairi , Totosy de Zepetnek Julia O. , Brooke‐Wavell Katherine , Goosey‐Tolfrey Victoria L. 
Published: October 2014

AbstractThe purpose of this study was to assess the reproducibility of body composition measurements by dual‐energy X‐ray absorptiometry (DXA) in 12 elite male wheelchair basketball players (age 31 ± 7 years, BMI 21 ± 2 kg/m2 and onset of disability 25 ± 9 years). Two whole body scans were performed on each participant in the supine position on the same day, using Lunar Prodigy Advance DXA (GE Lunar, Madison, WI, USA). Participants dismounted from the scanning table and were repositioned in‐between the first and second scan. Whole body coefficient of variation (CV) values for bone mineral content (BMC), fat mass (FM) and soft tissue lean mass (LTM) were all <2.0%. With the exclusion of arm FM (CV = 7.8%), CV values ranged from 0.1 to 3.7% for all total body and segmental measurements of BMC, FM and LTM. The least significant change that can be attributed to the effect of treatment intervention in an individual is 1.0 kg, 1.1 kg, 0.12 kg for FM, LTM, and BMC, respectively. This information can be used to determine meaningful changes in body composition when assessed using the same methods longitudinally. Whilst there may be challenges in the correct positioning of an individual with disability that can introduce greater measurement error, DXA is a highly reproducible technique in the estimation of total and regional body composition of elite wheelchair basketball athletes.
Exact theory of dense amorphous hard spheres in high dimension. III. The full replica symmetry breaking solution
Authors: Charbonneau Patrick , Kurchan Jorge , Parisi Giorgio , Urbani Pierfrancesco , Zamponi Francesco 
Published: October 2014

Abstract.
In the first part of this paper, we derive the general replica equations that describe infinite-dimensional hard spheres at any level of replica symmetry breaking (RSB) and in particular in the fullRSB scheme. We show that these equations are formally very similar to the ones that have been derived for spin glass models, thus showing that the analogy between spin glasses and structural glasses conjectured by Kirkpatrick, Thirumalai and Wolynes is realized in a strong sense in the mean-field limit. We also suggest how the computation could be generalized in an approximate way to finite-dimensional hard spheres. In the second part of the paper, we discuss the solution of these equations and we derive from it a number of physical predictions. We show that, below the Gardner transition where the 1RSB solution becomes unstable, a fullRSB phase exists and we locate the boundary of the fullRSB phase. Most importantly, we show that the fullRSB solution predicts correctly that jammed packings are isostatic, and allows one to compute analytically the critical exponents associated with the jamming transition, which are missed by the 1RSB solution. We show that these predictions compare very well with numerical results.
Store image influences in consumers’ perceptions of store brands: the moderating role of value consciousness
Authors: Delgado-Ballester Elena , Hernandez-Espallardo Miguel , Rodriguez-Orejuela Augusto 
Published: October 2014

Purpose
– The purpose of this study is to develop and test a conceptual model of the moderating effect of customers’ value consciousness (CVC) on the relationship of store image (SI) with four dimensions of the perceived risk associated to the purchase of a store brand over a manufacturers’ brand, and the direct effect of those variables on the perceived unfairness of manufacturers’ brand prices.

Design/methodology/approach
– A mall-intercept survey of 600 shoppers in Colombia (South America) gathered data on their consumption experiences of a store brand and manufacturer’s brand across six product categories and two supermarket chains.

Findings
– Results suggest that SI exerts different influences on the four categories of perceived risk, the strength of which varies with value-consciousness. Perceptions of the price unfairness of manufacturers’ brands are attenuated by the financial and functional risk of buying store brands but increased by the social and psychological risk.

Research limitations/implications
– The findings may not be generally applicable to other shopping contexts or customers. The functional perspective on SI may mean that the results are not directly comparable with other studies adopting different perspectives.

Practical implications
– For retailers, the key implications concern awareness and management of customers’ perceptions of relative risks and the impact of value-consciousness on the use of SI as a heuristic decision-making cue. For manufacturers, they are the need to demonstrate clear product differentiation as a rationale for higher prices.

Originality/value
– This is the first study to encompass value-consciousness, SI, perceived risk and perceptions of price unfairness in a single field survey.
Does channel decentralization lead to low quality product lines?
Authors: Chung Hwan , Lee Eunkyu 
Published: October 2014

Purpose
– The purpose of this study is to analyze the problem of optimal product line design in marketing channels.

Design/methodology/approach
– This paper develops a game theoretic model, in which a firm markets a line of a limited number of products at different quality levels to serve a market composed of multiple consumer segments. The consumer segments are modeled as clusters of somewhat heterogeneous consumers as typically observed in the real world. These model characteristics allow us to consider a broader set of targeting strategies such as sub-segmentation and partial cannibalization which have not been considered previously. By considering both a vertically integrated channel and a decentralized channel, we investigate how channel structure influences optimal product line design. We analyze the model mathematically with supplemental numerical analyses.

Findings
– Our analysis shows that “quality distortion” in product line design is not limited to the low-end product, as previously reported, but can happen to the high-end product. The direction of these quality distortions may be downward or upward, leading to either increased or decreased differentiation between the two products. Furthermore, channel decentralization makes it more likely for the firm to strategically choose upward partial cannibalization or sub-segmentation. Consequently, contrary to previous studies, we demonstrate that there exist conditions under which channel decentralization leads to higher product quality.

Originality/value
– Our model reflects a more realistic market environment and a firm’s practical constraints than previous studies, which typically assume perfect homogeneity within each segment and/or the feasibility of offering an infinite number of products. This extension produces interesting new results and insights that provide more practical implications for a firm’s optimal product line design strategy.
User-generated content behaviour of the dissatisfied service customer
Authors: Presi Caterina , Saridakis Charalampos , Hartmans Susanna 
Published: October 2014

Purpose– This study aims to focus on the motivation of service customers to create user-generated content (UGC) after a negative service experience. In examining this relationship, the moderating role of “extraversion” personality trait is also taken into consideration. Furthermore, the paper examines how differently motivated service customers react to a firm’s service recovery strategies, whilst insights into the relationship between UGC creation and specific online platform usage are also provided.Design/methodology/approach– Structural Equation Modeling is used to test the conceptual model, based on an empirical dataset collected from an online survey research of 239 service customers. The dataset pertains to international travellers and their UGC behaviour after a negative travel experience.Findings– Altruistic, vengeance and economic motivations are strong drivers for UGC creation after a negative service experience. Motivations also correlate to participation in specific online platforms. Furthermore, it is shown that highly extraverted customers create more UGC after a negative service experience when motivated by vengeance. Finally, higher levels of altruistic and self-enhancement motivations correlate with a positive attitude towards a firm’s response, whereas customers who are motivated by vengeance have a negative attitude towards a firm’s response.Practical implications– Customers who share their negative service experience by creating UGC in social media can be segmented according to their motivation. Service providers should inspect the UGC of their customers to understand the motivation behind it. The motivation to create UGC varies across platforms, and hence, customized service recovery strategies are required.Originality/value– This paper examines UGC creation in relation to motivation, extraversion, and attitude towards a firm’s response. This is the first reported application which collectively examines important issues like these in a unified theoretical framework.
Promoting boundary-spanning behavior among service personnel
Authors: (Jay) Yoo Jaewon , J. Arnold Todd , L. Frankwick Gary 
Published: October 2014

Purpose– The purpose of this model is to explain how person – organization fit (P – O fit) and competitive intensity, conceptualized as a job resource and a job demand, respectively, ultimately affect the development of frontline employee boundary-spanning behavior (BSB).Design/methodology/approach– A survey methodology was used in collecting data from a sample of bank employees in South Korea. To analyze the data, a structural equation model procedure using LISREL 8.5 was used (Jöreskog and Sörbom, 1996).Findings– Results suggest that a frontline employee’s P – O fit decreases emotional exhaustion and increases achievement-striving motivation. Competitive intensity significantly reduces achievement-striving motivation. Results also show that competitive intensity significantly attenuates the positive relationship between P – O fit and employee achievement-striving motivation, highlighting the importance of contextual industry stressors upon internal organizational behaviors. Both emotional exhaustion and achievement-striving motivation are found to ultimately affect BSBs except for the link between emotional exhaustion and service delivery.Originality/value– The current study applies the job-demands resources model to demonstrate how both an externally initiated job demand (competitive intensity) and an internally oriented job resource (person – organization fit) influence employee experience of emotional exhaustion and achievement-striving motivation. Interaction effects of P – O fit and competitive intensity on employee’s psychological states (emotional exhaustion and achievement-striving motivation) are also examined. Further, it is demonstrated that both emotional exhaustion and achievement-striving motivation will directly influence service employee boundary-spanning behaviors, but in differential manners. This highlights the importance of exhaustion and motivation as mediators for the ultimate effect of a job resource (P – O fit), answering a call for such understanding of the developmental process for BSBs (Podsakoffet al., 2000). This is the first empirical study to link both internal and external elements to illuminate the process for developing job demands and resources, as well as boundary spanning behaviors.
Gender, power and succession in family farm business
Authors: L. Glover Jane 
Published: October 2014

Purpose– The purpose of the paper is to present a case example of the power struggles and gender issues one daughter faced when she became a partner, and future successor, in the family business. This paper uses an ethnographic approach in order to study a small family farm in England. The case focuses on a small family farm, these businesses are unique in terms of their values and expectations for succession (Haberman and Danes, 2007), and identified by Wang (2010) as a fruitful avenue for research on daughter succession.Design/methodology/approach– The empirical work was gathered through the use of a single site ethnographic case study involving participant observation as the researcher worked on the family farm and semi-structured interviews with family members over two years.Findings– The results shed light on some of the social complexities of small family farms and power struggles within the family exacerbated by perceived gender issues. The work also highlights the potential threat to the daughter’s position as a partner, from her father’s favouritism of male employees.Practical implications– Institutions that provide help to family farm businesses need to be aware of the potential power issues within the family specifically related to gender, particularly in terms of succession planning.Originality/value– Using ethnography in family firms allows the researcher to be a part of the real-life world of family farmers, providing rich data to explore daughter succession.