bluuebunny/crossref_metadata_2025_split huggingface dataset:
Identifying antibiotic-resistant strains via cell sorting and elastic-light-scatter phenotyping
Authors: Narayana Iyengar Sharath , Dowden Brianna , Ragheb Kathy , Patsekin Valery , Rajwa Bartek , Bae Euiwon , Robinson J. Paul 
Published: July 2024

Abstract
The proliferation and dissemination of antimicrobial-resistant bacteria is an increasingly global challenge and is attributed mainly to the excessive or improper use of antibiotics. Currently, the gold-standard phenotypic methodology for detecting resistant strains is agar plating, which is a time-consuming process that involves multiple subculturing steps. Genotypic analysis techniques are fast, but they require pure starting samples and cannot differentiate between viable and non-viable organisms. Thus, there is a need to develop a better method to identify and prevent the spread of antimicrobial resistance. This work presents a novel method for detecting and identifying antibiotic-resistant strains by combining a cell sorter for bacterial detection and an elastic-light-scattering method for bacterial classification. The cell sorter was equipped with safety mechanisms for handling pathogenic organisms and enabled precise placement of individual bacteria onto an agar plate. The patterning was performed on an antibiotic-gradient plate, where the growth of colonies in sections with high antibiotic concentrations confirmed the presence of a resistant strain. The antibiotic-gradient plate was also tested with an elastic-light-scattering device where each colony’s unique colony scatter pattern was recorded and classified using machine learning for rapid identification of bacteria. Sorting and patterning bacteria on an antibiotic-gradient plate using a cell sorter reduced the number of subculturing steps and allowed direct qualitative binary detection of resistant strains. Elastic-light-scattering technology is a rapid, label-free, and non-destructive method that permits instantaneous classification of pathogenic strains based on the unique bacterial colony scatter pattern.

Key points
• Individual bacteria cells are placed on gradient agar plates by a cell sorter
• Laser-light scatter patterns are used to recognize antibiotic-resistant organisms
• Scatter patterns formed by colonies correspond to AMR-associated phenotypes
Use of a new vertical traction device for early traction-assisted staged closure of congenital abdominal wall defects: a prospective series of 16 patients
Authors: Ziegler Anna-Maria , Svoboda Daniel , Lüken-Darius Britta , Heydweiller Andreas , Kahl Fritz , Falk Sophie Christine , Rolle Udo , Theilen Till-Martin 
Published: July 2024

Abstract
Purpose
Abdominal wall closure in patients with giant omphalocele (GOC) and complicated gastroschisis (GS) remains to be a surgical challenge. To facilitate an early complete abdominal wall closure, we investigated the combination of a staged closure technique with continuous traction to the abdominal wall using a newly designed vertical traction device for newborns.

Methods
Four tertiary pediatric surgery departments participated in the study between 04/2022 and 11/2023. In case primary organ reduction and abdominal wall closure were not amenable, patients underwent a traction-assisted abdominal wall closure applying fasciotens®Pediatric. Outcome parameters were time to closure, surgical complications, infections, and hernia formation.

Results
Ten patients with GOC and 6 patients with GS were included. Complete fascial closure was achieved after a median time of 7 days (range 4–22) in GOC and 5 days (range 4–11) in GS. There were two cases of tear-outs of traction sutures and one skin suture line dehiscence after fascial closure. No surgical site infection or signs of abdominal compartment syndrome were seen. No ventral or umbilical hernia occurred after a median follow-up of 12 months (range 4–22).

Conclusion
Traction-assisted staged closure using fasciotens®Pediatric enabled an early tension-less fascial closure in GOC and GS in the newborn period.
Forensic age estimation of adolescents using computed tomography of the clavicles
Authors: Vamberszky Leonie , Uhl Markus 
Published: July 2024

AbstractIn forensic age estimation, CT imaging of the clavicles is used to determine an age over completed 21 years. If ossification of the medial clavicular epiphysis is complete, young men are assumed to be over 21 years of age. The aim of this study is to check the statistical parameters (specificity, predictive probability) for the characteristic "completed ossification of the medial clavicles". 285 male patients who, for various reasons, received a chest CT at the Medical Center of the University of Freiburg between 1st December 2019 and 6th December 2022 were screened for the study, of whom 203 patients were included in the study. The stage of clavicular ossification was classified as stage 1 – 5 according to Schmeling. While 70 out of 71 patients under 21 years of age were correctly estimated to be under 21 years of age, there was one patient whose ossification on one side was classified as stage 4 and who would therefore have been estimated to be over 21 years of age. If only subjects whose ossification stage was the same on both sides are included, the specificity of the test method is 100% and the positive predictive probability is 100%. If patients for whom only one side is stage 4 are also included, the specificity is 98.6%. Thus, only the complete and symmetrical ossification of both clavicles (stage 4 according to the Schmeling classification) in a standardised thin-layer CT can be classified as a reliable indicator of an age over 21 years in young men. In the case of asymmetric ossification of the medial clavicles (stage 4 is not reached on one side), false positive evaluations and the incorrect assumption of an age over 21 years can occur.
Longitudinal changes in cardiovascular disease–related proteins in welders
Authors: Dauter Ulrike Maria , Gliga Anda Roxana , Albin Maria , Broberg Karin 
Published: July 2024

Abstract
Objective
Occupational exposure to welding fumes is linked to a higher risk of cardiovascular disease; however, the threshold exposure level is unknown. Here, we aimed to identify changes in proteins associated with cardiovascular disease in relation to exposure to welding fumes.

Methods
Data were obtained from two timepoints six years apart for 338 non-smoking men (171 welders, 167 controls); of these, 174 (78 welders, 96 controls) had measurements available at both timepoints. Exposure was measured as personal respirable dust (adjusted for personal protective equipment), welding years, and cumulative exposure. Proximity extension assays were used to measure a panel of 92 proteins involved in cardiovascular processes in serum samples. Linear mixed models were used for longitudinal analysis. The biological functions and diseases related to the identified proteins were explored using the Ingenuity Pathway Analysis software.

Results
At both timepoints, the median respirable dust exposure was 0.7 mg/m3 for the welders. Seven proteins were differentially abundant between the welders and controls and increased incrementally with respirable dust: FGF23, CEACAM8, CD40L, PGF, CXCL1, CD84, and HO1. CD84 was significant after adjusting for multiple comparisons. These proteins have been linked to disorders of blood pressure, damage related to clogged blood vessels, and chronic inflammatory disorders.

Conclusion
Exposure to mild steel welding fumes below current occupational exposure limits for respirable particles and welding fumes in Europe and the US (1–5 mg/m3) was associated with changes in the abundance of proteins related to cardiovascular disease. Further research should evaluate the utility of these proteins as prospective biomarkers of occupational cardiovascular disease.
Autumn Leucojum autumnale and spring L. trichophyllum: the same flower type for different seasons with a different pollination scenario
Authors: Muñoz-Rodríguez Adolfo Francisco , Camino Barón Ignacio , Ortega-Olivencia Ana 
Published: July 2024

AbstractPlant reproduction may experience distinct evolutionary and ecological dynamics depending on their flowering phenology. Consequently, floral traits might undergo divergence selection to adapt to the difference in the abiotic and the biotic environment, especially if these traits affect intensity of competition plants experience due to pollinators. The present study analyzed the plant floral display, floral rewards, and the pollination and breeding systems of two related species of Leucojum, the autumn-blooming L. autumnale and the spring-blooming L. trichophyllum. The aim of the current study is to compare reproductive aspects of L. autumnale and L. trichophyllum due to differing environmental conditions. Both species needed pollinators to reproduce sexually, with zero (L. trichophyllum) or low values (c. 7.7%; L. autumnale) for fructification after self-pollination vs. over 90% after natural pollination (both species). Their flowers opened in the morning and closed at night, and neither produced nectar, only pollen as reward to pollinators. Plants of the L. autumnale studied population produced 1–4 inflorescences per plant vs. only 1 in L. trichophyllum, and the former presented a greater density of flowers per surface unit. Leucojum autumnale flowers were visited by Hymenoptera and those of L. trichophyllum only by two Coleoptera, which were most abundant at sunrise and sunset, whereas in the middle of the day, they visited Cistaceae flowers. This latter occurrence may represent a temporal niche partitioning rather than competition in relation to visiting hours, as the L. trichophyllum flowers offer a place for insects to spend the night, a period in which the flowers of the Cistaceae species have lost their petals.
Safety of anterior cervical corpectomy and fusion (ACCF) for the treatment of subaxial cervical spine injuries, a single center comparative matched analysis
Authors: El-Hajj Victor Gabriel , Singh Aman , Fletcher-Sandersjöö Alexander , Blixt Simon , Stenimahitis Vasilios , Nilsson Gunnar , Gerdhem Paul , Edström Erik , Elmi-Terander Adrian 
Published: July 2024

Abstract

Introduction
Anterior Cervical Discectomy and Fusion (ACDF) and Anterior Cervical Corpectomy and Fusion (ACCF) are both common surgical procedures in the management of pathologies of the subaxial cervical spine. While recent reviews have demonstrated ACCF to provide better decompression results compared to ACDF, the procedure has been associated with increased surgical risks. Nonetheless, the use of ACCF in a traumatic context has been poorly described. The aim of this study was to assess the safety of ACCF as compared to the more commonly performed ACDF.

Methods
All patients undergoing ACCF or ACDF for subaxial cervical spine injuries spanning over 2 disc-spaces and 3 vertebral-levels, between 2006 and 2018, at the study center, were eligible for inclusion. Patients were matched based on age and preoperative ASIA score.

Results
After matching, 60 patients were included in the matched analysis, where 30 underwent ACDF and ACCF, respectively. Vertebral body injury was significantly more common in the ACCF group (p = 0.002), while traumatic disc rupture was more frequent in the ACDF group (p = 0.032). There were no statistically significant differences in the rates of surgical complications, including implant failure, wound infection, dysphagia, CSF leakage between the groups (p ≥ 0.05). The rates of revision surgeries (p > 0.999), mortality (p = 0.222), and long-term ASIA scores (p = 0.081) were also similar.

Conclusion
Results of both unmatched and matched analyses indicate that ACCF has comparable outcomes and no additional risks compared to ACDF. It is thus a safe approach and should be considered for patients with extensive anterior column injury.
Carbon and water vapor exchanges coupling for different irrigated and rainfed conditions on Andean potato agroecosystems
Authors: Martínez-Maldonado Fabio Ernesto , Castaño-Marín Angela María , Góez-Vinasco Gerardo Antonio , Marin Fabio Ricardo 
Published: July 2024

AbstractThe fundamental exchange of water for carbon lays the groundwork for understanding the interplay between carbon and water cycles in terrestrial ecosystems, providing valuable insights into global water and carbon balances and vegetation growth. Inherent water use efficiency (IWUE) was used as a study framework of the diurnal patterns and degree of coupling of carbon and water exchange to investigate the net ecosystem carbon exchange (NEE) responses of three water regime potato cropping systems [full-irrigation (FI), deficit-irrigation (DI), and rainfed (RF)] in Cundinamarca, Colombia. The eddy covariance method was used to determine CO2and water fluxes, surface resistances, and the omega decoupling factor (Ω). Additionally, leaf area index (LAI), and specific leaf area (SLA) were assessed to determine the canopy influence on carbon and water exchange. The highest carbon sink activity (NEE = -311.96 ± 12.82 g C m−2) at FI, is primarily attributed to a larger canopy with high autotrophic activity and low internal resistance. This supported a highly coupled and synchronized exchange between evapotranspiration (ET) and gross primary production (GPP), as reflected in the highest IWUE (4.7 mg C kPa s−1 kg−1H2O). In contrast, the lower sink capacity at DI (NEE =  − 17.3 ± 4.6 g C m−2) and the net carbon source activity from RF (NEE = 187.21 ± 3.84 g C m−2) were related to a smaller leaf area available for water and carbon exchange, resulting in lower IWUE (2.3 and 1.01 mg C kPa s−1 kg−1H2O, respectively) and a decoupled and desynchronized gas exchange caused by unbalanced restrictions on ET and GPP fluxes. These results provide new information on carbon–water interactions in potatoes and improve the understanding of carbon sequestration and drought effects on potato sink activity.
Inflammation as a therapeutic target for osteoarthritis: A literature review of clinical trials
Authors: Zhu Rui , Fang Haonan , Wang Junjie , Ge Liru , Zhang Xiaoyue , Aitken Dawn , Cai Guoqi 
Published: July 2024

AbstractThe burden of osteoarthritis (OA) is rapidly increasing with population aging, but there are still no approved disease-modifying drugs available. Accumulating evidence has shown that OA is a heterogeneous disease with multiple phenotypes, and it is unlikely to respond to one-size-fits-all treatments. Inflammation is recognized as an important phenotype of OA and is associated with worse pain and joint deterioration. Therefore, it is believed that anti-inflammatory treatments may be more effective for OA with an inflammatory phenotype. In this review, we summarized clinical trials that evaluated anti-inflammatory treatments for OA and discussed whether these treatments are more effective in inflammatory OA phenotypes compared to general OA patients.
Biomarkers to predict efficacy of immune checkpoint inhibitors in colorectal cancer patients: a systematic review and meta-analysis
Authors: Yu Hang , Liu Qingquan , Wu Keting , Tang Shuang 
Published: July 2024

AbstractImmune checkpoint inhibitors (ICIs) are approved to treat colorectal cancer (CRC) with mismatch-repair gene deficiency, but the response rate remains low. Value of current biomarkers to predict CRC patients’ response to ICIs is unclear due to heterogeneous study designs and small sample sizes. Here, we aim to assess and quantify the magnitude of multiple biomarkers for predicting the efficacy of ICIs in CRC patients. We systematically searched MEDLINE, Embase, the Cochrane Library, and Web of Science databases (to June 2023) for clinical studies examining biomarkers for efficacy of ICIs in CRC patients. Random-effect models were performed for meta-analysis. We pooled odds ratio (OR) and hazard ratio (HR) with 95% confidence interval (CI) for biomarkers predicting response rate and survival. 36 studies with 1867 patients were included in systematic review. We found that a lower pre-treatment blood neutrophil-to-lymphocyte ratio (n=4, HR 0.37, 95%CI 0.21–0.67) predicts good prognosis, higher tumor mutation burden (n=10, OR 4.83, 95%CI 2.16–10.78) predicts response to ICIs, and liver metastasis (n=16, OR 0.32, 95%CI 0.16–0.63) indicates resistance to ICIs, especially when combined with VEGFR inhibitors. But the predictive value of tumor PD-L1 expression (n=9, OR 1.01, 95%CI 0.48–2.14) was insignificant in CRC. Blood neutrophil-to-lymphocyte ratio, tumor mutation burden, and liver metastasis, but not tumor PD-L1 expression, function as significant biomarkers to predict efficacy of ICIs in CRC patients. These findings help stratify CRC patients suitable for ICI treatments, improving efficacy of immunotherapy through precise patient management. (PROSPERO, CRD42022346716).
The multifaceted perspectives on the regulation of lncRNAs in hepatocellular carcinoma ferroptosis: from bench-to-bedside
Authors: Jin Xin , Huang Chun Xia , Tian Yue 
Published: July 2024

AbstractDespite being characterized by high malignancy, high morbidity, and low survival rates, the underlying mechanism of hepatocellular carcinoma (HCC) has not been fully elucidated. Ferroptosis, a non-apoptotic form of regulated cell death, possesses distinct morphological, biochemical, and genetic characteristics compared to other types of cell death. Dysregulated actions within the molecular network that regulates ferroptosis have been identified as significant contributors to the progression of HCC. Long non-coding RNAs (lncRNAs) have emerged as influential contributors to diverse cellular processes, regulating gene function and expression through multiple mechanistic pathways. An increasing body of evidence indicates that deregulated lncRNAs are implicated in regulating malignant events such as cell proliferation, growth, invasion, and metabolism by influencing ferroptosis in HCC. Therefore, elucidating the inherent role of ferroptosis and the modulatory functions of lncRNAs on ferroptosis in HCC might promote the development of novel therapeutic interventions for this disease. This review provides a succinct overview of the roles of ferroptosis and ferroptosis-related lncRNAs in HCC progression and treatment, aiming to drive the development of promising therapeutic targets and biomarkers for HCC patients.
Potential prognostic impact of left-ventricular global longitudinal strain in analysis of whole-heart myocardial mechanics in nonischemic dilated cardiomyopathy
Authors: Mėlinytė-Ankudavičė Karolina , Marcinkevičienė Karolina , Galnaitienė Grytė , Bučius Paulius , Lapinskas Tomas , Ereminienė Eglė , Šakalytė Gintarė , Jurkevičius Renaldas 
Published: July 2024

AbstractCardiac magnetic resonance (CMR) feature-tracking (FT) has an important diagnostic role in non-ischemic dilated cardiomyopathy (NIDCM). To date, the relationship between whole-heart myocardial mechanics by CMR and early primary outcomes in NIDCM has not been elucidated. patients with NIDCM were eligible for this study. CMR-FT was used to analyze whole-heart myocardial mechanics. The primary outcomes were a composite of heart failure (HF) death, heart transplantation (HT), and hospitalization for HF worsening (WHF) after 1-year since diagnosis. 98 patients were included. During a 1-year follow-up, a worse prognosis occurred in 32 patients (30 hospitalizations for WHF, 8 deaths, and 3 HT). The left ventricular (LV) global longitudinal systolic strain (GLS), left ventricular global circumferential strain (LV GCS), strains of right ventricle and both atria were significantly reduced in patients with events vs. those without (GLS − 8.0 ± 3.4 vs. − 12.1 ± 4.5, p < 0.001; GCS − 13.0 ± 6.4 vs. − 18.3 ± 7.1, p < 0.001; right ventricular (RV) GLS − 12.1 ± 4.9 vs. − 17.4 ± 6.4, p < 0.001; left atrial longitudinal strain 7.5 ± 3.8 vs. 15.1 ± 12.3, p < 0.001; right atrial longitudinal strain 11.0 ± 6.7 vs. 17.2 ± 8.0, p < 0.001). Left ventricular ejection fraction (LVEF) was significantly higher in patients with better prognosis (22.7 ± 8.7 vs. 33.56 ± 10.4, p < 0.001). Multivariate regression analysis revealed LV GLS as an independent predictor of a worse prognosis (OR 0.787, CI 95% 0.697–0.890, p < 0.001). reduction of LV GLS showed the strongest predictive value for the composite outcome of WHF, HT, and HF death.
Graphical abstract
Mathematical Knowledge of Early Algebra Exhibited by Pre-Service Early Childhood Education Teachers
Authors: Pincheira Nataly , Alsina Ángel 
Published: July 2024

Abstract
This study analyzes the mathematical knowledge to teach early algebra exhibited by pre-service early childhood education teachers, from the perspective of the Mathematical Knowledge for Teaching (MKT) model. The research adopts a mixed exploratory-descriptive methodological approach, based on the application of the MKT-early algebra questionnaire (3–6), consisting of six open-ended items that place teachers in various teaching situations reflecting the knowledge that characterizes early algebra at this stage of schooling. The analysis of the answers given by the pre-service teachers of early childhood education revealed a level general of insufficient mathematical knowledge, with the common content knowledge exhibiting fewer limitations compared to the other subdomains that comprise the model, and the horizon content knowledge the weakest. We conclude that it is necessary to offer teacher training programs that deepen the didactics of early algebra and provide tools to further the effective teaching of this content block in early childhood education.
Eco-friendly Fluorescent Sensor for Sensitive and Selective Detection of Zn2+ and Fe3+ Ions: Applications in Human Hair Samples
Authors: Kamel Rasha M. , El-Sakka Sahar S. , Abbas Maram M. A. , Soliman M. H. A. 
Published: July 2024

AbstractA new eco-friendly sensor, 3-((6-((4-chlorobenzylidene)amino)pyridin-2-yl)imino)indolin-2-one (CBAPI) was synthesized and well characterized. The CBAPI sensor was employed for detecting Zn2+ and Fe3+ ions. It exhibited a low limit of detection at pH 6.0, with values of 2.90, for Zn2+ and 3.59 nmol L−1 for Fe3+ ions. The sensor demonstrated high selectivity over other interfering cations. Additionally, the high binding constants reflect the great affinity of sensor towards Zn2+ and Fe3+ ions. To further validate its quantification ability for Zn2+ ions, the synthesized CBAPI sensor was used to determine Zn levels in human hair samples, and the results were confirmed using atomic absorption spectroscopy (AAS). The AGREE metric tool was used to assess the method’s environmental impact and practical applicability. These positive outcomes indicated that the new method for detecting Zn2+ and Fe3+ ions is environmentally friendly and safe for humans. The developed CBAPI sensor represents a potential development in metal ion detection, combining sensitivity, selectivity, and rapidity.