bluuebunny/crossref_metadata_2025_split huggingface dataset:
Aitken Mode Aerosols Buffer Decoupled Mid‐Latitude Boundary Layer Clouds Against Precipitation Depletion
Authors: McCoy Isabel L. , Wyant Matthew C. , Blossey Peter N. , Bretherton Christopher S. , Wood Robert 
Published: June 2024

AbstractAerosol‐cloud‐precipitation interactions are a leading source of uncertainty in estimating climate sensitivity. Remote marine boundary layers where accumulation mode (∼100–400 nm diameter) aerosol concentrations are relatively low are very susceptible to aerosol changes. These regions also experience heightened Aitken mode aerosol (∼10–100 nm) concentrations associated with ocean biology. Aitken aerosols may significantly influence cloud properties and evolution by replenishing cloud condensation nuclei and droplet number lost through precipitation (i.e., Aitken buffering). We use a large‐eddy simulation with an Aitken‐mode enabled microphysics scheme to examine the role of Aitken buffering in a mid‐latitude decoupled boundary layer cloud regime observed on 15 July 2017 during the Aerosol and Cloud Experiments in the Eastern North Atlantic flight campaign: cumulus rising into stratocumulus under elevated Aitken concentrations (∼100–200 mg−1). In situ measurements are used to constrain and evaluate this case study. Our simulation accurately captures observed aerosol‐cloud‐precipitation interactions and reveals time‐evolving processes driving regime development and evolution. Aitken activation into the accumulation mode in the cumulus layer provides a reservoir for turbulence and convection to carry accumulation aerosols into the drizzling stratocumulus layer above. Further Aitken activation occurs aloft in the stratocumulus layer. Together, these activation events buffer this cloud regime against precipitation removal, reducing cloud break‐up and associated increases in heterogeneity. We examine cloud evolution sensitivity to initial aerosol conditions. With halved accumulation number, Aitken aerosols restore accumulation concentrations, maintain droplet number similar to original values, and prevent cloud break‐up. Without Aitken aerosols, precipitation‐driven cloud break‐up occurs rapidly. In this regime, Aitken buffering sustains brighter, more homogeneous clouds for longer.
Cretaceous Crust in the Scotia Sea: Missing Pieces in a Geological Puzzle?
Authors: Oldenhage J. H. , Schellart W. P. , Beniest A. 
Published: June 2024

AbstractThe interplay between regional tectonics and the development of a major ocean gateway between the Pacific and the Atlantic Ocean has resulted in numerous paleogeographic reconstruction studies that describe the Cenozoic tectonic history of the Scotia Sea region. Despite the multitude of published tectonic reconstructions and the variety of geological and geophysical data available from the Scotia Sea, the geological history remains ambiguous. We present a comparative paleogeographic analysis of previously published tectonic reconstructions to identify agreements and conflicts between these reconstructions. We propose an alternative model to explain the Cenozoic evolution of the Scotia Sea region. The paleogeographic comparison shows that most reconstructions agree on the tectonic evolution of the South Scotia Ridge and the East Scotia Ridge. Major differences between the reconstructions are the role of the westward subducting plate below the South Sandwich plate, and the age and origin of the Central Scotia Sea. Tectonic reconstructions assume that the Central Scotia Sea is either part of a Cenozoic back‐arc basin, or a captured piece of Cretaceous oceanic crust. We propose a new alternative tectonic reconstruction that brings these two prevailing hypotheses elegantly together. Here, we identified new geographical blocks consisting of thinned continental or Cretaceous oceanic fragments that originate from the Paleo‐Pacific Weddell Sea gateway from high‐resolution bathymetry. These fragments are now part of the Central Scotia Sea and have been affected by early back‐arc tectonic activity of the South Sandwich subduction zone, leading locally to the formation of Cenozoic‐aged crust in the Central Scotia Sea.
A Novel Regional‐Minima Image Segmentation Method for Fluid Transport Simulations in Unresolved Rock Images
Authors: Li Rui , Yang Yi , Zhang Yuxuan , Zhan Wenbo , Yang Jianhui , Zhou Yingfang 
Published: June 2024

AbstractUnresolved digital rock images are often used to avoid high computational costs and limited field of views associated with processing fine‐resolution rock images. However, segmentation of unresolved images using classical methods is suboptimal due to the presence of the partial‐volume effect. Suboptimal segmentations can significantly influence the geometry and effective properties of the reconstructed models. This study reveals that partial‐volume pixels with high pore fractions remain as regional minima in intensity levels in unresolved images. By identifying these regional‐minima pixels, we can effectively extract pore space obscured by the partial‐volume effect. Based on this observation, we propose a novel segmentation method capable of identifying these regional‐minima partial‐volume pixels and converting them to pure pore pixels, thereby binarizing the digital rock images. The method is validated on sandstone and carbonate rock samples. Our method demonstrates a notable improvement in modeled permeability accuracy, surpassing 50% compared to the thresholding method and over 30% compared to the watershed method. Moreover, models segmented by this approach exhibit smaller pore and throat sizes compared to the substantially overestimated results obtained by classical methods. These findings suggest that the regional‐minima segmentation method effectively corrects for the partial‐volume effect and preserves more detailed pore structures. Consequently, it enhances the quality of binarized rock geometries, leading to improved accuracy in fluid‐flow simulations.
The effect of early postnatal auditory stimulation on outcomes in preterm infants
Authors: Di Fiore Juliann M. , Liu Gloria , Loparo Kenneth A. , Bearer Cynthia F. 
Published: June 2024

Abstract
Preterm infants are deprived of in utero sensory stimulation during the third trimester, an important period of central nervous system development. As a result, maturational trajectories are often reduced in infants born preterm. One such system affected is the brain including the auditory and respiratory control pathways. During normal pregnancy the intrauterine environment attenuates external auditory stimuli while exposing the fetus to filtered maternal voice, intra-abdominal sounds, and external stimuli. In contrast, during the third trimester of development, preterm infants are exposed to a vastly different soundscape including non-attenuated auditory sounds and a lack of womb related stimuli, both of which may affect postnatal brain maturation. Therefore, fostering a nurturing postnatal auditory environment during hospitalization may have a significant impact on related outcomes of preterm infants. Studies using a range of postnatal auditory stimulations have suggested that exposure to sounds or lack thereof can have a significant impact on outcomes. However, studies are inconsistent with sound levels, duration of exposure to auditory stimuli, and the gestational age at which infants are exposed.

Impact

Auditory stimulation can provide a low cost and low risk intervention to stabilize respiration, improve neuronal maturation and reduce long-term sequelae in preterm infants.

The potential benefits of auditory stimulation are dependent on the type of sound, the duration of exposure and age at time of exposure.

Future studies should focus on the optimal type and duration of sound exposure and postnatal developmental window to improve outcomes.
Airway management may influence postoperative ventilation need in preterm infants after laser eye treatment
Authors: Trinh Sarolta H. , Tövisházi Gyula , Kátai Lóránt K. , Bogner Luca L. , Maka Erika , Balog Vera , Szabó Miklós , Szabó Attila J. , Gál János , Jermendy Ágnes , Hauser Balázs 
Published: June 2024

Abstract

Background
Retinopathy of prematurity is treated with laser photocoagulation under general anaesthesia with intubation using endotracheal tube (ETT), which carries a risk for postoperative mechanical ventilation (MV). Laryngeal mask airway (LMA) may provide a safe alternative. We assessed the need for postoperative MV in preterm infants who received LMA versus ETT.

Methods
In this single-centre, retrospective cohort study, preterm infants who underwent laser photocoagulation between 2014–2021 were enroled. For airway management, patients received either LMA (n = 224) or ETT (n = 47). The outcome was the rate of postoperative MV.

Results
Patients’ age were 37 [35;39] weeks of postmenstrual age, median bodyweight of Group LMA was higher than Group ETT’s (2110 [1800;2780] g versus 1350 [1230;1610] g, respectively, p < 0.0001). After laser photocoagulation, 8% of Group LMA and 74% of Group ETT left the operating theatre requiring MV. Multiple logistic regression revealed that the use of LMA and every 100 g increase in bodyweight significantly decreased the odds of mechanical ventilation (OR 0.21 [95% CI 0.07–0.60], and 0.73 [95% CI 0.63–0.84], respectively). Propensity score matching confirmed that LMA decreased the odds of postoperative MV (OR 0.30 [95% CI 0.11–0.70]).

Conclusion
The use of LMA is associated with a reduced need for postoperative MV.

Impact

Using laryngeal mask airway instead of endotracheal tube for airway management in preterm infants undergoing general anaesthesia for laser photocoagulation for treating retinopathy of prematurity could significantly decrease the postoperative need for mechanical ventilation. According to our current understanding, this has been the largest study investigating the effect of laryngeal mask airway during general anaesthesia in preterm infants. Our study suggests that the use of laryngeal mask airway is a viable alternative to intubation in the vulnerable population of preterm infants in need of laser treatment.
KLHL14 is a tumor suppressor downregulated in undifferentiated thyroid cancer
Authors: Esposito Matteo , Migliaccio Antonella , Credendino Sara Carmela , Maturi Rufina , Prevete Nella , De Vita Gabriella 
Published: June 2024

AbstractKLHL14 is a substrate-binding subunit of Cullin-RING ligase 3 ubiquitin ligase complex, highly enriched in thyroid since early embryonic development, together with its antisense RNA KLHL14-AS. We have previously demonstrated that Klhl14-AS is a competing endogenous RNA regulating several differentiation and survival factors in thyroid cancer, acting as tumor suppressor. Recently, also KLHL14 has been shown to function as tumor suppressor in diffuse large B-cell lymphoma and in malignant mesothelioma. Here we show that KLHL14 expression is strongly reduced in anaplastic thyroid cancer, the less differentiated and most aggressive type of thyroid neoplasia. Such reduction is reproduced in different in vivo and in vitro models of thyroid cancer, being invariably associated with loss of differentiation. When Klhl14 expression is rescued in thyroid transformed cells, it reduces the cell proliferation rate and increase the number of apoptotic cells. On the other side, Klhl14 loss of function in normal thyroid cells affects the expression of several regulatory as well as functional thyroid markers. All these findings suggest that KLHL14 could be considered as a novel tumor suppressor in thyroid cancer, by also revealing its physiological role in the maintenance of a fully differentiated and functional thyroid phenotype.
LIMA1 links the E3 ubiquitin ligase RNF40 to lipid metabolism
Authors: Liu Zhan , Fan Kexin , Abudukeremu Aikedaimu , Gao Min , Tan Xinyue , Mao Xiaojuan , Li Xinyu , Ma Wenting , Ma Xusheng , Li Caolong , Yang Yinglai , Tu Kangsheng , Chen Jing , Zhang Yilei , Guan Yaqun 
Published: June 2024

AbstractLIMA1 is a LIM domain and Actin binding 1 protein that acts as a skeleton protein to promote cholesterol absorption, which makes it an ideal target for interfering with lipid metabolism. However, the detailed regulation of LIMA1 remains unclear. Here, we identified that ring finger protein 40 (RNF40), an E3 ubiquitin ligase previously known as an epigenetic modifier to increase H2B ubiquitination, mediated the ubiquitination of LIMA1 and thereby promoted its degradation in a proteasome-dependent manner. Fraction studies revealed that the 1–166aa fragment of LIMA1 was indispensable for the interaction with RNF40, and at least two domains of RNF40 might mediate the association of RNF40 with LIMA1. Notably, treatment with simvastatin dramatically decreased the levels of CHO and TG in control cells rather than cells with overexpressed LIMA1. Moreover, RNF40 significantly decreased lipid content, which could be reversed by LIMA1 overexpression. These findings suggest that E3 ubiquitin ligase RNF40 could directly target LIMA1 and promote its protein degradation in cytoplasm, leading to the suppression of lipid accumulation mediated by LIMA1. Collectively, this study unveils that RNF40 is a novel E3 ubiquitin ligase of LIMA1, which underpins its high therapeutic value to combat dysregulation of lipid metabolism.
The ability of microRNAs to regulate the immune response in ischemia/reperfusion inflammatory pathways
Authors: Artimovič Peter , Špaková Ivana , Macejková Ema , Pribulová Timea , Rabajdová Miroslava , Mareková Mária , Zavacká Martina 
Published: June 2024

AbstractMicroRNAs play a crucial role in regulating the immune responses induced by ischemia/reperfusion injury. Through their ability to modulate gene expression, microRNAs adjust immune responses by targeting specific genes and signaling pathways. This review focuses on the impact of microRNAs on the inflammatory pathways triggered during ischemia/reperfusion injury and highlights their ability to modulate inflammation, playing a critical role in the pathophysiology of ischemia/reperfusion injury. Dysregulated expression of microRNAs contributes to the pathogenesis of ischemia/reperfusion injury, therefore targeting specific microRNAs offers an opportunity to restore immune homeostasis and improve patient outcomes. Understanding the complex network of immunoregulatory microRNAs could provide novel therapeutic interventions aimed at attenuating excessive inflammation and preserving tissue integrity.
HNF4A and HNF1A exhibit tissue specific target gene regulation in pancreatic beta cells and hepatocytes
Authors: Ng Natasha Hui Jin , Ghosh Soumita , Bok Chek Mei , Ching Carmen , Low Blaise Su Jun , Chen Juin Ting , Lim Euodia , Miserendino María Clara , Tan Yaw Sing , Hoon Shawn , Teo Adrian Kee Keong 
Published: June 2024

AbstractHNF4A and HNF1A encode transcription factors that are important for the development and function of the pancreas and liver. Mutations in both genes have been directly linked to Maturity Onset Diabetes of the Young (MODY) and type 2 diabetes (T2D) risk. To better define the pleiotropic gene regulatory roles of HNF4A and HNF1A, we generated a comprehensive genome-wide map of their binding targets in pancreatic and hepatic cells using ChIP-Seq. HNF4A was found to bind and regulate known (ACY3, HAAO, HNF1A, MAP3K11) and previously unidentified (ABCD3, CDKN2AIP, USH1C, VIL1) loci in a tissue-dependent manner. Functional follow-up highlighted a potential role for HAAO and USH1C as regulators of beta cell function. Unlike the loss-of-function HNF4A/MODY1 variant I271fs, the T2D-associated HNF4A variant (rs1800961) was found to activate AKAP1, GAD2 and HOPX gene expression, potentially due to changes in DNA-binding affinity. We also found HNF1A to bind to and regulate GPR39 expression in beta cells. Overall, our studies provide a rich resource for uncovering downstream molecular targets of HNF4A and HNF1A that may contribute to beta cell or hepatic cell (dys)function, and set up a framework for gene discovery and functional validation.
Widespread chromatin context-dependencies of DNA double-strand break repair proteins
Authors: Vergara Xabier , Manjón Anna G. , de Haas Marcel , Morris Ben , Schep Ruben , Leemans Christ , Friskes Anoek , Beijersbergen Roderick L. , Sanders Mathijs A. , Medema René H. , van Steensel Bas 
Published: June 2024

AbstractDNA double-strand breaks are repaired by multiple pathways, including non-homologous end-joining (NHEJ) and microhomology-mediated end-joining (MMEJ). The balance of these pathways is dependent on the local chromatin context, but the underlying mechanisms are poorly understood. By combining knockout screening with a dual MMEJ:NHEJ reporter inserted in 19 different chromatin environments, we identified dozens of DNA repair proteins that modulate pathway balance dependent on the local chromatin state. Proteins that favor NHEJ mostly synergize with euchromatin, while proteins that favor MMEJ generally synergize with distinct types of heterochromatin. Examples of the former are BRCA2 and POLL, and of the latter the FANC complex and ATM. Moreover, in a diversity of human cancer types, loss of several of these proteins alters the distribution of pathway-specific mutations between heterochromatin and euchromatin. Together, these results uncover a complex network of proteins that regulate MMEJ:NHEJ balance in a chromatin context-dependent manner.
Precise recognition of benzonitrile derivatives with supramolecular macrocycle of phosphorylated cavitand by co-crystallization method
Authors: Li Heng , Li Zhijin , Lin Chen , Jiang Juli , Wang Leyong 
Published: June 2024

AbstractThe importance of molecular docking in drug discovery lies in the precise recognition between potential drug compounds and their target receptors, which is generally based on the computational method. However, it will become quite interesting if the rigid cavity structure of supramolecular macrocycles can precisely recognize a series of guests with specific fragments by mimicking molecular docking through co-crystallization experiments. Herein, we report a phenylphosphine oxide-bridged aromatic supramolecular macrocycle, F[3]A1-[P(O)Ph]3, which precisely recognizes benzonitrile derivatives through non-covalent interactions to form key-lock complexes by co-crystallization method. A total of 15 various benzonitrile derivatives as guest molecules are specifically bound by F[3]A1-[P(O)Ph]3 in co-crystal structures, respectively. Notably, among them, crisaborole (anti-dermatitis) and alectinib (anti-cancer) with the benzonitrile fragment, which are two commercial drug molecules approved by the U.S. Food and Drug Administration (FDA), could also form a key-lock complex with F[3]A1-[P(O)Ph]3 in the crystal state, respectively.
Nanoscale chemical reaction exploration with a quantum magnifying glass
Authors: Csizi Katja-Sophia , Steiner Miguel , Reiher Markus 
Published: June 2024

AbstractNanoscopic systems exhibit diverse molecular substructures by which they facilitate specific functions. Theoretical models of them, which aim at describing, understanding, and predicting these capabilities, are difficult to build. Viable quantum-classical hybrid models come with specific challenges regarding atomistic structure construction and quantum region selection. Moreover, if their dynamics are mapped onto a state-to-state mechanism such as a chemical reaction network, its exhaustive exploration will be impossible due to the combinatorial explosion of the reaction space. Here, we introduce a “quantum magnifying glass” that allows one to interactively manipulate nanoscale structures at the quantum level. The quantum magnifying glass seamlessly combines autonomous model parametrization, ultra-fast quantum mechanical calculations, and automated reaction exploration. It represents an approach to investigate complex reaction sequences in a physically consistent manner with unprecedented effortlessness in real time. We demonstrate these features for reactions in bio-macromolecules and metal-organic frameworks, diverse systems that highlight general applicability.
Bridging molecular-scale interfacial science with continuum-scale models
Authors: Ilgen Anastasia G. , Borguet Eric , Geiger Franz M. , Gibbs Julianne M. , Grassian Vicki H. , Jun Young-Shin , Kabengi Nadine , Kubicki James D. 
Published: June 2024

AbstractSolid–water interfaces are crucial for clean water, conventional and renewable energy, and effective nuclear waste management. However, reflecting the complexity of reactive interfaces in continuum-scale models is a challenge, leading to oversimplified representations that often fail to predict real-world behavior. This is because these models use fixed parameters derived by averaging across a wide physicochemical range observed at the molecular scale. Recent studies have revealed the stochastic nature of molecular-level surface sites that define a variety of reaction mechanisms, rates, and products even across a single surface. To bridge the molecular knowledge and predictive continuum-scale models, we propose to represent surface properties with probability distributions rather than with discrete constant values derived by averaging across a heterogeneous surface. This conceptual shift in continuum-scale modeling requires exponentially rising computational power. By incorporating our molecular-scale understanding of solid–water interfaces into continuum-scale models we can pave the way for next generation critical technologies and novel environmental solutions.
Nanoconfinement steers nonradical pathway transition in single atom fenton-like catalysis for improving oxidant utilization
Authors: Meng Yan , Liu Yu-Qin , Wang Chao , Si Yang , Wang Yun-Jie , Xia Wen-Qi , Liu Tian , Cao Xu , Guo Zhi-Yan , Chen Jie-Jie , Li Wen-Wei 
Published: June 2024

AbstractThe introduction of single-atom catalysts (SACs) into Fenton-like oxidation promises ultrafast water pollutant elimination, but the limited access to pollutants and oxidant by surface catalytic sites and the intensive oxidant consumption still severely restrict the decontamination performance. While nanoconfinement of SACs allows drastically enhanced decontamination reaction kinetics, the detailed regulatory mechanisms remain elusive. Here, we unveil that, apart from local enrichment of reactants, the catalytic pathway shift is also an important cause for the reactivity enhancement of nanoconfined SACs. The surface electronic structure of cobalt site is altered by confining it within the nanopores of mesostructured silica particles, which triggers a fundamental transition from singlet oxygen to electron transfer pathway for 4-chlorophenol oxidation. The changed pathway and accelerated interfacial mass transfer render the nanoconfined system up to 34.7-fold higher pollutant degradation rate and drastically raised peroxymonosulfate utilization efficiency (from 61.8% to 96.6%) relative to the unconfined control. It also demonstrates superior reactivity for the degradation of other electron-rich phenolic compounds, good environment robustness, and high stability for treating real lake water. Our findings deepen the knowledge of nanoconfined catalysis and may inspire innovations in low-carbon water purification technologies and other heterogeneous catalytic applications.