bluuebunny/crossref_metadata_2025_split huggingface dataset:
ANALYTICAL REPRESENTATIONS OF REGULAR-SHAPED NANOSTRUCTURES FOR GAS STORAGE APPLICATIONS
Authors: LIM WEI-XIAN , THORNTON AARON W. 
Published: September 2015

Nanospace governs the dynamics of physical, chemical, material and biological systems, and the facility to model it with analytical formulae provides an essential tool to address some of the worlds’ key problems such as gas purification, separation and storage. This paper aims to provide some analytical models to exploit building blocks representing various geometric shapes that describe nanostructures. In order to formulate the various building blocks, we use the continuous approximation which assumes a uniform distribution of atoms on their surfaces. We then calculate the potential energy of the van der Waals interaction between an atom and the structure to evaluate the location of the atom where the potential energy is at its minimum. We provide applications of the analytical models for some real structures where more than one type of building block is required.
Living mulch cover crops for weed control in small-scale applications
Authors: Pfeiffer Anne , Silva Erin , Colquhoun Jed 
Published: September 2015

AbstractA primary challenge of managing vegetable production on a small land base is the maintenance and building of soil quality. Previous studies have demonstrated the benefits of cover crops for improved soil quality; however, small growers struggle to fit cover crops into rotations. Small-scale growers with limited available land are under significant pressure to maximize their saleable yield and often work to maximize output by using intensive cropping practices that may include both early and late season crops, thus limiting the typical shoulder season windows in which cover crops can be grown. In-season living mulches may be an effective strategy to provide small-scale growers the benefits of cover crops with less land commitment than cover crops used in typical rotations. However, research on living mulches is generally not suited to small-scale organic production systems due to the typical reliance on chemical herbicide to suppress mulches. An experiment was designed with the goal of evaluating living mulch systems for space-limited organic vegetable production. In a 2-year study, four living mulch crops (buckwheat (Fagopyrum esculentum), field pea (Pisum sativum), crimson clover (Trifolium incarnatum) and medium red clover (Trifolium pratense)) and a cultivated control with no mulch cover were planted in early spring each year. Snap beans (Phaseolus vulgarisvar. Tavera), transplanted bell peppers (Capsicum annuumvar. Revolution), and transplanted fall broccoli (Brassica oleraceavar. Imperial) were then planted directly into living mulches. During each summer growing season, living mulches and weeds were mown between-rows and hand-weeded in-row approximately every 10–14 days as needed for management. Labor times for mowing and cultivation were found to be higher in all treatments relative to the cultivated control. An inverse relationship between living mulch biomass and weed biomass was observed, demonstrating that living mulches may contribute to weed suppression. However, lower vegetable yields were seen in the living mulch treatments, most likely due to resource competition among vegetables, living mulches and weeds. High pre-existing weed seedbank and drought conditions likely increased competition and contributed to reduced vegetable yield.
Gradual onset and recovery of the Younger Dryas abrupt climate event in the tropics
Authors: Partin J.W. , Quinn T.M. , Shen C.-C. , Okumura Y. , Cardenas M.B. , Siringan F.P. , Banner J.L. , Lin K. , Hu H.-M. , Taylor F.W. 
Published: September 2015

AbstractProxy records of temperature from the Atlantic clearly show that the Younger Dryas was an abrupt climate change event during the last deglaciation, but records of hydroclimate are underutilized in defining the event. Here we combine a new hydroclimate record from Palawan, Philippines, in the tropical Pacific, with previously published records to highlight a difference between hydroclimate and temperature responses to the Younger Dryas. Although the onset and termination are synchronous across the records, tropical hydroclimate changes are more gradual (>100 years) than the abrupt (10–100 years) temperature changes in the northern Atlantic Ocean. The abrupt recovery of Greenland temperatures likely reflects changes in regional sea ice extent. Proxy data and transient climate model simulations support the hypothesis that freshwater forced a reduction in the Atlantic meridional overturning circulation, thereby causing the Younger Dryas. However, changes in ocean overturning may not produce the same effects globally as in Greenland.
Flexible transition metal dichalcogenide nanosheets for band-selective photodetection
Authors: Velusamy Dhinesh Babu , Kim Richard Hahnkee , Cha Soonyoung , Huh June , Khazaeinezhad Reza , Kassani Sahar Hosseinzadeh , Song Giyoung , Cho Suk Man , Cho Sung Hwan , Hwang Ihn , Lee Jinseong , Oh Kyunghwan , Choi Hyunyoug , Park Cheolmin 
Published: September 2015

AbstractThe photocurrent conversions of transition metal dichalcogenide nanosheets are unprecedentedly impressive, making them great candidates for visible range photodetectors. Here we demonstrate a method for fabricating micron-thick, flexible films consisting of a variety of highly separated transition metal dichalcogenide nanosheets for excellent band-selective photodetection. Our method is based on the non-destructive modification of transition metal dichalcogenide sheets with amine-terminated polymers. The universal interaction between amine and transition metal resulted in scalable, stable and high concentration dispersions of a single to a few layers of numerous transition metal dichalcogenides. Our MoSe2 and MoS2 composites are highly photoconductive even at bending radii as low as 200 μm on illumination of near infrared and visible light, respectively. More interestingly, simple solution mixing of MoSe2 and MoS2 gives rise to blended composite films in which the photodetection properties were controllable. The MoS2/MoSe2 (5:5) film showed broad range photodetection suitable for both visible and near infrared spectra.
Development of high-yield influenza A virus vaccine viruses
Authors: Ping Jihui , Lopes Tiago J.S. , Nidom Chairul A. , Ghedin Elodie , Macken Catherine A. , Fitch Adam , Imai Masaki , Maher Eileen A. , Neumann Gabriele , Kawaoka Yoshihiro 
Published: September 2015

AbstractVaccination is one of the most cost-effective ways to prevent infection. Influenza vaccines propagated in cultured cells are approved for use in humans, but their yields are often suboptimal. Here, we screened A/Puerto Rico/8/34 (PR8) virus mutant libraries to develop vaccine backbones (defined here as the six viral RNA segments not encoding haemagglutinin and neuraminidase) that support high yield in cell culture. We also tested mutations in the coding and regulatory regions of the virus, and chimeric haemagglutinin and neuraminidase genes. A combination of high-yield mutations from these screens led to a PR8 backbone that improved the titres of H1N1, H3N2, H5N1 and H7N9 vaccine viruses in African green monkey kidney and Madin–Darby canine kidney cells. This PR8 backbone also improves titres in embryonated chicken eggs, a common propagation system for influenza viruses. This PR8 vaccine backbone thus represents an advance in seasonal and pandemic influenza vaccine development.
Systematic Dimensionality Reduction for Quantum Walks: Optimal Spatial Search and Transport on Non-Regular Graphs
Authors: Novo Leonardo , Chakraborty Shantanav , Mohseni Masoud , Neven Hartmut , Omar Yasser 
Published: September 2015

AbstractContinuous time quantum walks provide an important framework for designing new algorithms and modelling quantum transport and state transfer problems. Often, the graph representing the structure of a problem contains certain symmetries that confine the dynamics to a smaller subspace of the full Hilbert space. In this work, we use invariant subspace methods, that can be computed systematically using the Lanczos algorithm, to obtain the reduced set of states that encompass the dynamics of the problem at hand without the specific knowledge of underlying symmetries. First, we apply this method to obtain new instances of graphs where the spatial quantum search algorithm is optimal: complete graphs with broken links and complete bipartite graphs, in particular, the star graph. These examples show that regularity and high-connectivity are not needed to achieve optimal spatial search. We also show that this method considerably simplifies the calculation of quantum transport efficiencies. Furthermore, we observe improved efficiencies by removing a few links from highly symmetric graphs. Finally, we show that this reduction method also allows us to obtain an upper bound for the fidelity of a single qubit transfer on an XY spin network.
PEA-CLARITY: 3D molecular imaging of whole plant organs
Authors: Palmer William M. , Martin Antony P. , Flynn Jamie R. , Reed Stephanie L. , White Rosemary G. , Furbank Robert T. , Grof Christopher P. L. 
Published: September 2015

AbstractHere we report the adaptation of the CLARITY technique to plant tissues with addition of enzymatic degradation to improve optical clearing and facilitate antibody probe penetration. Plant-Enzyme-Assisted (PEA)-CLARITY, has allowed deep optical visualisation of stains, expressed fluorescent proteins and IgG-antibodies in Tobacco and Arabidopsis leaves. Enzyme treatment enabled penetration of antibodies into whole tissues without the need for any sectioning of the material, thus facilitating protein localisation of intact tissue in 3D whilst retaining cellular structure.
Biological Sources of Intrinsic and Extrinsic Noise in cI Expression of Lysogenic Phage Lambda
Authors: Lei Xue , Tian Wei , Zhu Hongyuan , Chen Tianqi , Ao Ping 
Published: September 2015

AbstractGenetically identical cells exposed to homogeneous environment can show remarkable phenotypic difference. To predict how phenotype is shaped, understanding of how each factor contributes is required. During gene expression processes, noise could arise either intrinsically in biochemical processes of gene expression or extrinsically from other cellular processes such as cell growth. In this work, important noise sources in gene expression of phage λ lysogen are quantified using models described by stochastic differential equations (SDEs). Results show that DNA looping has sophisticated impacts on gene expression noise: When DNA looping provides autorepression, like in wild type, it reduces noise in the system; When the autorepression is defected as it is in certain mutants, DNA looping increases expression noise. We also study how each gene operator affects the expression noise by changing the binding affinity between the gene and the transcription factor systematically. We find that the system shows extraordinarily large noise when the binding affinity is in certain range, which changes the system from monostable to bistable. In addition, we find that cell growth causes non-negligible noise, which increases with gene expression level. Quantification of noise and identification of new noise sources will provide deeper understanding on how stochasticity impacts phenotype.
Evidence for the expression of abundant microRNAs in the locust genome
Authors: Wang Yanli , Jiang Feng , Wang Huimin , Song Tianqi , Wei Yuanyuan , Yang Meiling , Zhang Jianzhen , Kang Le 
Published: September 2015

AbstractSubstantial accumulation of neutral sequences accounts for genome size expansion in animal genomes. Numerous novel microRNAs (miRNAs), which evolve in a birth and death manner, are considered evolutionary neutral sequences. The migratory locust is an ideal model to determine whether large genomes contain abundant neutral miRNAs because of its large genome size. A total of 833 miRNAs were discovered and several miRNAs were randomly chosen for validation by Northern blot and RIP-qPCR. Three additional verification methods, namely, processing-dependent methods of miRNA biogenesis using RNAi, evolutionary comparison with closely related species and evidence supported by tissue-specific expression, were applied to provide compelling results that support the authenticity of locust miRNAs. We observed that abundant local duplication events of miRNAs, which were unique in locusts compared with those in other insects with small genome sizes, may be responsible for the substantial acquisition of miRNAs in locusts. Together, multiple evidence showed that the locust genome experienced a burst of miRNA acquisition, suggesting that genome size expansion may have considerable influences of miRNA innovation. These results provide new insight into the genomic dynamics of miRNA repertoires under genome size evolution.
BA-j as a novel CDK1 inhibitor selectively induces apoptosis in cancer cells by regulating ROS
Authors: Zhang Shixuan , Bao Yongming , Ju Xiulan , Li Kangjian , Shang Haiyan , Ha Lisha , Qian Yuan , Zou Liang , Sun Xiaodan , Li Jing , Wang Qianru , Fan Qingyu 
Published: September 2015

AbstractCyclin-dependent kinase 1 (CDK1) is the only necessary CDK in cell proliferation and a novel target in the development of anticancer drugs. 8-Hydroxypiperidinemethyl-baicalein (BA-j) is a novel selective CDK1 inhibitor with broad spectrum anti-cancer activity (IC50 12.3 μM) and 2 tumor xenografts. Because of the differential mechanisms controlling redox-states in normal and cancer cells, BA-j can capture oxygen free radicals (·O2−) and selectively increase the level of H2O2 in cancer cells, thereby specifically oxidize and activate the intrinsic apoptosis pathway bypassing the extrinsic death receptor pathway, thus inducing apoptosis in cancer cells rather than in normal cells. BA-j is different from cytotoxic anticancer drugs which can activate both the intrinsic apoptosis pathway and the extrinsic death receptor pathway and therefore harm normal cells while killing cancer cells. The molecular and biochemical mechanisms of reactive oxygen species (ROS) regulation suggest that BA-j may be developed into a novel anticancer agent.
Memory reconsolidation may be disrupted by a distractor stimulus presented during reactivation
Authors: Crestani Ana Paula , Zacouteguy Boos Flávia , Haubrich Josué , Ordoñez Sierra Rodrigo , Santana Fabiana , Molina Johanna Marcela Duran , Cassini Lindsey de Freitas , Alvares Lucas de Oliveira , Quillfeldt Jorge Alberto 
Published: September 2015

AbstractMemories can be destabilized by the reexposure to the training context and may reconsolidate into a modified engram. Reconsolidation relies on some particular molecular mechanisms involving LVGCCs and GluN2B-containing NMDARs. In this study we investigate the interference caused by the presence of a distractor - a brief, unanticipated stimulus that impair a fear memory expression - during the reactivation session and tested the hypothesis that this disruptive effect relies on a reconsolidation process. Rats previously trained in the contextual fear conditioning (CFC) were reactivated in the presence or absence of a distractor stimulus. In the test, groups reactivated in the original context with distractor displayed a reduction of the freezing response lasting up to 20 days. To check for the involvement of destabilization / reconsolidation mechanisms, we studied the effect of systemic nimodipine (a L-VGCC blocker) or intra-CA1 ifenprodil (a selective GluN2B/NMDAR antagonist) infused right before the reactivation session. Both treatments were able to prevent the disruptive effect of distraction. Ifenprodil results also bolstered the case for hippocampus as the putative brain structure hosting this phenomenon. Our results provide some evidence in support of a behavioral, non-invasive procedure that was able to disrupt an aversive memory in a long-lasting way.
Time Circular Birefringence in Time-Dependent Magnetoelectric Media
Authors: Zhang Ruo-Yang , Zhai Yan-Wang , Lin Shi-Rong , Zhao Qing , Wen Weijia , Ge Mo-Lin 
Published: September 2015

AbstractLight traveling in time-dependent media has many extraordinary properties which can be utilized to convert frequency, achieve temporal cloaking and simulate cosmological phenomena. In this paper, we focus on time-dependent axion-type magnetoelectric (ME) media and prove that light in these media always has two degenerate modes with opposite circular polarizations corresponding to one wave vector "Equation missing" and name this effect “time circular birefringence” (TCB). By interchanging the status of space and time, the pair of TCB modes can appear simultaneously via “time refraction” and “time reflection” of a linear polarized incident wave at a time interface of ME media. The superposition of the two TCB modes causes the “time Faraday effect”, namely the globally unified polarization axes rotate with time. A circularly polarized Gaussian pulse traversing a time interface is also studied. If the wave-vector spectrum of a pulse mainly concentrates in the non-traveling-wave band, the pulse will be trapped with nearly fixed center while its intensity will grow rapidly. In addition, we propose an experimental scheme of using molecular fluid with external time-varying electric and magnetic fields both parallel to the direction of light to realize these phenomena in practice.
Class effect of beta-blockers in survivors of ST-elevation myocardial infarction: A nationwide cohort study using an insurance claims database
Authors: Lin Ting-Tse , Arnold Chan K. , Chen Ho-Min , Lai Chao-Lun , Lai Mei-Shu 
Published: September 2015

AbstractBeta-blockers can help reduce mortality following acute myocardial infarction (MI); however, whether beta-blockers exert a class effect remains controversial. This study identified all patients with first ST-elevation MI for the period of 2003 to 2010 from the National Health Insurance claims database, Taiwan. We compared patients prescribed carvedilol, bisoprolol and propranolol. Study outcomes included all-cause death, cardiovascular death and recurrence of MI. The propensity scores were constructed using multinomial logistic regression to model the receipt of different beta-blockers. Treating carvedilol group as a reference, we employed a simultaneous three-group comparison approach using the Cox regression model with adjustment for the propensity scores to compare the relative risks of various outcomes. Among the 16836 patients, 7591 were prescribed carvedilol, 5934 bisoprolol and 3311 propranolol. Mean follow-up time was one year. After accounting for baseline differences, patients treated with bisoprolol (HR 0.87, 95% CI 0.72–1.05, p = 0.14) or propranolol (HR 1.07, 95% CI 0.84–1.36, p = 0.58) had a similar risk of all-cause death in comparison with carvedilol. No significant differences were observed among three beta-blocker groups with regard to the risks of cardiovascular death and recurrence of MI. Our results suggest that beta-blockers exert a possible class effect in the treatment of acute MI.
Formation and stabilization of the telomeric antiparallel G-quadruplex and inhibition of telomerase by novel benzothioxanthene derivatives with anti-tumor activity
Authors: Zhang Wen , Chen Min , Ling Wu Yan , Tanaka Yoshimasa , Juan Ji Yan , Lin Zhang Su , He Wei Chuan , Xu Yan 
Published: September 2015

AbstractG-quadruplexes formed in telomeric DNA sequences at human chromosome ends can be a novel target for the development of therapeutics for the treatment of cancer patients. Herein, we examined the ability of six novel benzothioxanthene derivatives S1–S6 to induce the formation of and stabilize an antiparallel G-quadruplex by EMSA, UV-melting and CD techniques and the influence of S1–S6 on A549 and SGC7901 cells through real-time cell analysis, wound healing, trap assay methods. Results show that six compounds could differentially induce 26 nt G-rich oligonucleotides to form the G-quadruplex with high selectivity vs C-rich DNA, mutated DNA and double-stranded DNA, stabilize it with high affinity, promote apoptosis and inhibit mobility and telomerase activity of A549 cells and SGC7901 cells. Especially, S1, S3, S4 displayed stronger abilities, of which S3 was the most optimal with the maximum ΔTm value being up to 29.8 °C for G-quadruplex, the minimum IC50 value being 0.53 μM and the maximum cell inhibitory rate being up to 97.2%. This study suggests that this type of compounds that induce the formation of and stabilize the telomeric antiparallel G-quadruplex and consequently inhibit telomerase activity, leading to cell apoptosis, can be screened for the discovery of novel antitumor therapeutics.
Myeloid-related protein 8 induces self-tolerance and cross-tolerance to bacterial infection via TLR4- and TLR2-mediated signal pathways
Authors: Coveney Andrew P. , Wang Wei , Kelly Justin , Liu Jing Hua , Blankson Siobhan , Wu Qiong Di , Redmond H. Paul , Wang Jiang Huai 
Published: September 2015

AbstractMyeloid-related protein 8 (Mrp8) is the active component of Mrp8/14 protein complex released by phagocytes at the site of infection and stimulates inflammatory responses. However, it is unclear whether Mrp8 could induce self-tolerance and cross-tolerance to bacterial infection. Here we report that Mrp8 triggered TNF-α and IL-6 release via a Toll-like receptor 4 (TLR4)-dependent manner. Pre-stimulation of murine macrophages and human monocytes with Mrp8 induced self-tolerance to Mrp8 re-stimulation and cross-tolerance to lipopolysaccharide (LPS), bacterial lipoprotein (BLP), gram-negative and gram-positive bacterial challenges, with substantially attenuated TNF-α and IL-6 release. Moreover, Mrp8 tolerisation significantly reduced serum TNF-α and IL-6, increased polymorphonuclear neutrophil (PMN) recruitment and accelerated bacterial clearance, thus protecting mice against LPS-induced lethality and cecal ligation and puncture (CLP)-induced polymicrobial sepsis. In addition to TLR4, TLR2 also contributed to Mrp8-induced inflammatory response and tolerance. Down-regulation of phosphorylated p38 by Mrp8 pre-stimulation was predominantly responsible for the intracellular mechanism of Mrp8-induced tolerance. Thus, our findings of Mrp8-induced self-tolerance and cross-tolerance may provide a potential strategy for attenuating an overwhelming proinflammatory cascade and enhancing antimicrobial responses during microbial sepsis.
Role of local and distant functional connectivity density in the development of minimal hepatic encephalopathy
Authors: Qi Rongfeng , Zhang Long Jiang , Chen Hui Juan , Zhong Jianhui , Luo Song , Ke Jun , Xu Qiang , Kong Xiang , Liu Chang , Lu Guang Ming 
Published: September 2015

AbstractThe progression of functional connectivity (FC) patterns from non-hepatic encephalopathy (non-HE) to minimal HE (MHE) is not well known. This resting-state functional magnetic resonance imaging (rs-fMRI) study investigated the evolution of intrinsic FC patterns from non-HE to MHE. A total of 103 cirrhotic patients (MHE, n = 34 and non-HE, n = 69) and 103 healthy controls underwent rs-fMRI scanning. Maps of distant and local FC density (dFCD and lFCD, respectively) were compared among MHE, non-HE and healthy control groups. Decreased lFCD in anterior cingulate cortex, pre- and postcentral gyri, cuneus, lingual gyrus and putamen was observed in both MHE and non-HE patients relative to controls. There was no difference in lFCD between MHE and non-HE groups. The latter showed decreased dFCD in inferior parietal lobule, cuneus and medial frontal cortex relative to controls; however, MHE patients showed decreased dFCD in frontal and parietal cortices as well as increased dFCD in thalamus and caudate head relative to control and non-HE groups. Abnormal FCD values in some regions correlated with MHE patients’ neuropsychological performance. In conclusion, lFCD and dFCD were perturbed in MHE. Impaired dFCD in regions within the cortico-striato-thalamic circuit may be more closely associated with the development of MHE.