bluuebunny/crossref_metadata_2025_split huggingface dataset:
Rickettsial Infection in Animals, Humans and Ticks in Paulicéia, Brazil
Authors: Silveira I. , Martins T. F. , Olegário M. M. , Peterka C. , Guedes E. , Ferreira F. , Labruna M. B. 
Published: January 2015

SummaryA previous study in Paulicéia Municipality, south‐eastern Brazil, reported 9.7% of the Amblyomma triste ticks to be infected by Rickettsia parkeri, a bacterial pathogen that causes spotted fever in humans. These A. triste ticks were shown to be associated with marsh areas, where the marsh deer Blastocerus dichotomus is a primary host for this tick species. During 2008–2009, blood serum samples were collected from 140 horses, 41 dogs, 5 opossums (Didelphis albiventris) and 26 humans in farms from Pauliceia Municipality. Ticks were collected from these animals, from vegetation and from additional wildlife in these farms. Overall, 25% (35/140) of the horses, 7.3% (3/41) of the dogs, 3.8% (1/26) of the humans and 100% (5/5) of the opossums were seroreactive (titre ≥64) to spotted fever group (SFG) Rickettsia spp. Multivariate statistical analysis indicated that horses that were allowed to forage in the marsh were 4.8 times more likely to be seroreactive to spotted fever group (SFG) Rickettsia spp than horses that did not forage in the marsh. In addition, horses that had been living in the farm for more than 8.5 years were 2.8 times more likely to be seroreactive to SFG Rickettsia spp than horses that were living for ≤8.5 years. Ticks collected from domestic animals or from vegetation included Amblyomma cajennense, Amblyomma coelebs, Amblyomma dubitatum, Dermacentor nitens and Rhipicephalus microplus. By PCR analyses, only one pool of A. coelebs ticks from the vegetation was shown to be infected by rickettsiae, for which DNA sequencing revealed to be Rickettsia amblyommii. Ticks (not tested by PCR) collected from wildlife encompassed A. cajennense and Amblyomma rotundatum on lizards (Tupinambis sp), and A. cajennense and A. triste on the bird Laterallus viridis. Our results indicate that the marsh area of Paulicéia offers risks of infection by SFG rickettsiae.
Effect of Thermal State and Thermal Comfort on Cycling Performance in the Heat
Authors: Schulze Emiel , Daanen Hein A.M. , Levels Koen , Casadio Julia R. , Plews Daniel J. , Kilding Andrew E. , Siegel Rodney , Laursen Paul B. 
Published: January 2015

Purpose:To determine the effect of thermal state and thermal comfort on cycling performance in the heat.Methods:Seven well-trained male triathletes completed 3 performance trials consisting of 60 min cycling at a fixed rating of perceived exertion (14) followed immediately by a 20-km time trial in hot (30°C) and humid (80% relative humidity) conditions. In a randomized order, cyclists either drank ambient-temperature (30°C) fluid ad libitum during exercise (CON), drank ice slurry (−1°C) ad libitum during exercise (ICE), or precooled with iced towels and ice slurry ingestion (15g/kg) before drinking ice slurry ad libitum during exercise (PC+ICE). Power output, rectal temperature, and ratings of thermal comfort were measured.Results:Overall mean power output was possibly higher in ICE (+1.4% ± 1.8% [90% confidence limit]; 0.4 > smallest worthwhile change [SWC]) and likely higher PC+ICE (+2.5% ± 1.9%; 1.5 > SWC) than in CON; however, no substantial differences were shown between PC+ICE and ICE (unclear). Time-trial performance was likely enhanced in ICE compared with CON (+2.4% ± 2.7%; 1.4 > SWC) and PC+ICE (+2.9% ± 3.2%; 1.9 > SWC). Differences in mean rectal temperature during exercise were unclear between trials. Ratings of thermal comfort were likely and very likely lower during exercise in ICE and PC+ICE, respectively, than in CON.Conclusions:While PC+ICE had a stronger effect on mean power output compared with CON than ICE did, the ICE strategy enhanced late-stage time-trial performance the most. Findings suggest that thermal comfort may be as important as thermal state for maximizing performance in the heat.
Shoulder-Muscle Electromyography During Shoulder External-Rotation Exercises With and Without Slight Abduction
Authors: Sakita Kazuto , Seeley Matthew K. , Myrer Joseph William , Hopkins J. Ty 
Published: January 2015

Context:Standing and side-lying external-rotation exercises produce high activation of the deltoid and infraspinatus. Slight shoulder abduction during these exercises may decrease deltoid activity and increase infraspinatus activity.Objective:To determine if the addition of a towel under the arm during standing and side-lying external rotation affects infraspinatus, middle and posterior deltoid, and pectoralis major activation characteristics compared with a no-towel condition.Design:Controlled laboratory study.Participants:20 male volunteers (age 26 ± 3 y, height 1.80 ± 0.07 m, mass 77 ± 10 kg) who were right-hand dominant and had bilaterally healthy shoulders with no current cervical pathology and no skin infection or shoulder lesion.Interventions:External-rotation exercises without a towel roll (0° shoulder abduction) and with a towel roll (30° shoulder abduction) were performed in a standing and side-lying.Main Outcome Measures:Maximal voluntary isometric contraction for the infraspinatus, middle and posterior deltoid, and pectoralis major and external rotation in standing and side-lying with and without a towel roll were performed. Normalized average and peak surface EMG amplitude were compared between the towel conditions during standing and side-lying external rotation.Results:Both infraspinatus and pectoralis major activity had no significant differences between the towel conditions in standing and side-lying (P > .05). In standing and side-lying, posterior-deltoid activity was significantly greater with a towel roll (P < .05). Middle-deltoid activity had no significant differences between the towel conditions in standing (P > .05). However, in side-lying, middle-deltoid activity was significantly lower with a towel roll (P < .05).Conclusion:Middle-deltoid activity decreased with a towel roll during side-lying exercises. More data are needed to determine if a towel roll could be used to potentially reduce superior glide during external-rotation exercises.
Descriptive Analysis of Common Functional Limitations Identified by Patients With Shoulder Pain
Authors: Smith-Forbes Enrique V. , Moore-Reed Stephanie D. , Westgate Philip M. , Kibler W. Ben , Uhl Tim L. 
Published: January 2015

Context:Recent establishment of G-codes by the US government requires therapists to report function limitations at initial evaluation. Limited information exists specific to the most common limitations in patients with shoulder pain.Objective:To describe the most commonly expressed shoulder limitations with activities and their severity/level of impairment from a patient’s perspective on the initial evaluation.Design:Descriptive.Setting:Patients reporting pain with overhead activity and seeking medical attention from one orthopedic surgeon were recruited as part of a cohort study.Patients:176 with shoulder superior labral tear from anterior to posterior (SLAP), subacromial impingement, combined SLAP and rotator cuff, and nonspecific (female = 53, age = 41 ± 13 y; male = 123, age = 41 ± 12 y).Interventions:Data were obtained on the initial visit from the Patient-Specific Functional Scale (PSFS) questionnaire. Three researchers extracted meaningful concepts from the PSFS and linked them to the International Classification of Functioning (ICF) categories according to established ICF linking rules.Results:176 participants yielded 765 meaningful concepts that were linked to the ICF with a 66% agreement between researchers before consensus. There were no differences between diagnoses. Of all patients, 88% reported functional limitations coded into meaningful concepts as represented by 10 ICF codes; 634 (83%) meaningful concepts were linked to the activities and participation domain while 129 (17%) were linked to the body function domain. Only 2 reported functional limitations that were considered nondefinable (nd). The overall average initial impairment score on the PSFS = 4 ± 2.5 out of 10 points.Conclusion:Meaningful concepts from the activities and participation domain were most commonly identified as functional limitations and were more prevalent than limitations from the body function domain. This information helps identify some of the most common limitations in patients with shoulder pain that therapists can use to efficiently document patient functional impairment.
Effect of Salted Ice Bags on Surface and Intramuscular Tissue Cooling and Rewarming Rates
Authors: Hunter Eric J. , Ostrowski Jennifer , Donahue Matthew , Crowley Caitlyn , Herzog Valerie 
Published: January 2015

Context:Many researchers have investigated the effectiveness of different cryotherapy agents at decreasing intramuscular tissue temperatures. However, no one has looked at the effectiveness of adding salt to an ice bag.Objective:To compare the cooling effectiveness of different ice bags (wetted, salted cubed, and salted crushed) on cutaneous and intramuscular temperatures.Design:Repeated-measures counterbalanced design.Setting:University research laboratory.Participants:24 healthy participants (13 men, 11 women; age 22.46 ± 2.33 y, height 173.25 ± 9.78 cm, mass 74.51 ± 17.32 kg, subcutaneous thickness 0.63 ± 0.27 cm) with no lower-leg injuries, vascular diseases, sensitivity to cold, compromised circulation, or chronic use of NSAIDs.Interventions:Ice bags made of wetted ice (2000 mL ice and 300 mL water), salted cubed ice (intervention A; 2000 mL of cubed ice and 1/2 tablespoon of salt), and salted crushed ice (intervention B; 2000 mL of crushed ice and 1/2 tablespoon of salt) were applied to the posterior gastrocnemius for 30 min. Each participant received all conditions with at least 4 d between treatments.Main Outcome Measure:Cutaneous and intramuscular (2 cm plus adipose thickness) temperatures of nondominant gastrocnemius were measured during a 10-min baseline period, a 30-min treatment period, and a 45-min rewarming period.Results:Differences from baseline were observed for all treatments. The wetted-ice and salted-cubed-ice bags produced significantly lower intramuscular temperatures than the salted-crushed-ice bag. Wetted-ice bags produced the greatest temperature change for cutaneous tissues.Conclusions:Wetted- and salted-cubed-ice bags were equally effective at decreasing intramuscular temperature at 2 cm subadipose. Clinical practicality may favor salted-ice bags over wetted-ice bags.
Inherited landscapes and sea level change
Authors: Cloetingh Sierd , Haq Bilal U. 
Published: January 2015

Volume and shape combine to find a level
How can we understand the geological record of sea level change? Sea level varies on time scales from decades to millions of years. These changes have local, regional, and global components and are caused by a wide variety of earth processes. Cloetingh and Haq review how the views of stratigraphers (who interpret the record of marine sediments) and geodynamicists (who consider changes in the shape of Earth caused by lithospheric and mantle processes) have begun to complement each other and are moving toward a more coherent interpretation of the history of sea level. They focus on cyclic sea-level changes 0.5 to 3.0 million years in duration that occurred in the Cretaceous period, approximately 145 to 65 million years ago.

Science
, this issue
10.1126/science.1258375
The exceptionally powerful TeV γ-ray emitters in the Large Magellanic Cloud
Authors:   The H.E.S.S. Collaboration
Published: January 2015

A light on the origin of cosmic rays
There's a new lab for studying the origins of cosmic rays: our neighbor galaxy, the Large Magellanic Cloud. Astronomers are now making progress on this topic by examining the gamma rays that are produced when cosmic rays interact with gas or lower-energy photons. The H.E.S.S. Collaboration has detected three sources of gamma rays in a variety of forms in the galactic satellite to the Milky Way. The sources include the pulsar wind nebula of N 157B, the supernova remnant N 132D, and the superbubble 30 Dor C. Oddly, supernova 1987A was not detected.

Science
, this issue p.
406
Vaccine Self-Assembling Immune Matrix Is a New Delivery Platform That Enhances Immune Responses to Recombinant HBsAg in Mice
Authors: Grenfell Rafaella F. Q. , Shollenberger Lisa M. , Samli E. Farah , Harn Donald A. 
Published: January 2015

ABSTRACTVaccination remains the most effective public health tool to prevent infectious diseases. Many vaccines are marginally effective and need enhancement for immunocompromised, elderly, and very young populations. To enhance immunogenicity, we exploited the biphasic property of the (RADA)4 synthetic oligopeptide to create VacSIM (vaccine self-assembling immune matrix), a new delivery method. VacSIM solution can easily be mixed with antigens, organisms, and adjuvants for injection. Postinjection, the peptides self-assemble into hydrated nanofiber gel matrices, forming a depot with antigens and adjuvants in the aqueous phase. We believe the depot provides slow release of immunogens, leading to increased activation of antigen-presenting cells that then drive enhanced immunogenicity. Using recombinant hepatitis B virus surface antigen (rHBsAg) as a model immunogen, we compared VacSIM delivery to delivery in alum or complete Freund's adjuvant (CFA). Delivery of the rHBsAg antigen to mice via VacSIM without adjuvant elicited higher specific IgG responses than when rHBsAg was delivered in alum or CFA. Evaluating IgG subtypes showed a mixed Th1/Th2 type response following immunization with VacSIM, which was driven further toward Th1 with addition of CpG as the adjuvant. Increased specific IgG endpoint titers were observed in both C57BL/6 and BALB/c mice, representative of Th1 and Th2 environments, respectively. Restimulation of splenocytes suggests that VacSIM does not cause an immediate proinflammatory response in the host. Overall, these results suggest that VacSIM, as a new delivery method, has the potential to enhance immunogenicity and efficacy of numerous vaccines.
Discordance between Xpert MTB/RIF Assay and Bactec MGIT 960 Culture System for Detection of Rifampin-Resistant Mycobacterium tuberculosis Isolates in a Country with a Low Tuberculosis (TB) Incidence
Authors: Mokaddas Eiman , Ahmad Suhail , Eldeen Hanaa S. , Al-Mutairi Noura 
Published: January 2015

ABSTRACTAmong 452 samples that were positive by the Xpert MTB/RIF (Xpert) assay and MGIT 960 system (MGIT), 440 and 10Mycobacterium tuberculosissamples were detected as rifampin susceptible and rifampin resistant, respectively. Two isolates that were rifampin susceptible by the MGIT system were rifampin resistant by the Xpert assay.rpoBsequencing identified a silent (CTG521TTG) mutation in one isolate and a missense (GAC516TAC) mutation in another. The detection of rifampin resistance is imperfect with both the Xpert assay and MGIT system. Any discordant rifampin resistance results should be confirmed by sequencing of therpoBgene.
Soluble T Cell Immunoglobulin Mucin Domain 3 Is Shed from CD8
+
T Cells by the Sheddase ADAM10, Is Increased in Plasma during Untreated HIV Infection, and Correlates with HIV Disease Progression
Authors: Clayton Kiera L. , Douglas-Vail Matthew B. , Rahman A. K. M. Nur-ur , Medcalf Karyn E. , Xie Irene Y. , Chew Glen M. , Tandon Ravi , Lanteri Marion C. , Norris Philip J. , Deeks Steven G. , Ndhlovu Lishomwa C. , Ostrowski Mario A. 
Published: January 2015

ABSTRACT

Chronic HIV infection results in a loss of HIV-specific CD8
+
T cell effector function, termed “exhaustion,” which is mediated, in part, by the membrane coinhibitory receptor T cell immunoglobulin mucin domain-3 (Tim-3). Like many other receptors, a soluble form of this protein has been described in human blood plasma. However, soluble Tim-3 (sTim-3) is poorly characterized, and its role in HIV disease is unknown. Here, we show that Tim-3 is shed from the surface of responding CD8
+
T cells by the matrix metalloproteinase ADAM10, producing a soluble form of the coinhibitory receptor. Despite previous reports in the mouse model, no alternatively spliced, soluble form of Tim-3 was observed in humans. Shed sTim-3 was found in human plasma and was significantly elevated during early and chronic untreated HIV infection, but it was not found differentially modulated in highly active antiretroviral therapy (HAART)-treated HIV-infected subjects or in elite controllers compared to HIV-uninfected subjects. Plasma sTim-3 levels were positively correlated with HIV load and negatively correlated with CD4 counts. Thus, plasma sTim-3 shedding correlated with HIV disease progression. Despite these correlations, we found that shedding Tim-3 did not improve the function of CD8
+
T cells in terms of gamma interferon production or prevent their apoptosis through galectin-9. Further characterization studies of sTim-3 function are needed to understand the contribution of sTim-3 in HIV disease pathogenesis, with implications for novel therapeutic interventions.

IMPORTANCE
Despite the overall success of HAART in slowing the progression to AIDS in HIV-infected subjects, chronic immune activation and T cell exhaustion contribute to the eventual deterioration of the immune system. Understanding these processes will aid in the development of interventions and therapeutics to be used in combination with HAART to slow or reverse this deterioration. Here, we show that a soluble form of T cell exhaustion associated coinhibitory molecule 3, sTim-3, is shed from the surface of T cells. Furthermore, sTim-3 is elevated in the plasma of treatment-naive subjects with acute or chronic HIV infection and is associated with markers of disease progression. This is the first study to characterize sTim-3 in human plasma, its source, and mechanism of production. While it is still unclear whether sTim-3 contributes to HIV pathogenesis, sTim-3 may represent a new correlate of HIV disease progression.
Modulation of a Pore in the Capsid of JC Polyomavirus Reduces Infectivity and Prevents Exposure of the Minor Capsid Proteins
Authors: Nelson Christian D. S. , Ströh Luisa J. , Gee Gretchen V. , O'Hara Bethany A. , Stehle Thilo , Atwood Walter J. 
Published: January 2015

ABSTRACT
JC polyomavirus (JCPyV) infection of immunocompromised individuals results in the fatal demyelinating disease progressive multifocal leukoencephalopathy (PML). The viral capsid of JCPyV is composed primarily of the major capsid protein virus protein 1 (VP1), and pentameric arrangement of VP1 monomers results in the formation of a pore at the 5-fold axis of symmetry. While the presence of this pore is conserved among polyomaviruses, its functional role in infection or assembly is unknown. Here, we investigate the role of the 5-fold pore in assembly and infection of JCPyV by generating a panel of mutant viruses containing amino acid substitutions of the residues lining this pore. Multicycle growth assays demonstrated that the fitness of all mutants was reduced compared to that of the wild-type virus. Bacterial expression of VP1 pentamers containing substitutions to residues lining the 5-fold pore did not affect pentamer assembly or prevent association with the VP2 minor capsid protein. The X-ray crystal structures of selected pore mutants contained subtle changes to the 5-fold pore, and no other changes to VP1 were observed. Pore mutant pseudoviruses were not deficient in assembly, packaging of the minor capsid proteins, or binding to cells or in transport to the host cell endoplasmic reticulum. Instead, these mutant viruses were unable to expose VP2 upon arrival to the endoplasmic reticulum, a step that is critical for infection. This study demonstrated that the 5-fold pore is an important structural feature of JCPyV and that minor modifications to this structure have significant impacts on infectious entry.

IMPORTANCE
JCPyV is an important human pathogen that causes a severe neurological disease in immunocompromised individuals. While the high-resolution X-ray structure of the major capsid protein of JCPyV has been solved, the importance of a major structural feature of the capsid, the 5-fold pore, remains poorly understood. This pore is conserved across polyomaviruses and suggests either that these viruses have limited structural plasticity in this region or that this pore is important in infection or assembly. Using a structure-guided mutational approach, we showed that modulation of this pore severely inhibits JCPyV infection. These mutants do not appear deficient in assembly or early steps in infectious entry and are instead reduced in their ability to expose a minor capsid protein in the host cell endoplasmic reticulum. Our work demonstrates that the 5-fold pore is an important structural feature for JCPyV.
Narrowing of Human Influenza A Virus-Specific T Cell Receptor α and β Repertoires with Increasing Age
Authors: Gil Anna , Yassai Maryam B. , Naumov Yuri N. , Selin Liisa K. 
Published: January 2015

ABSTRACT

Alterations in memory CD8 T cell responses may contribute to the high morbidity and mortality caused by seasonal influenza A virus (IAV) infections in older individuals. We questioned whether memory CD8 responses to this nonpersistent virus, to which recurrent exposure with new strains is common, changed over time with increasing age. Here, we show a direct correlation between increasing age and narrowing of the HLA-A2-restricted IAV Vα and Vβ T cell repertoires specific to M1 residues 58 to 66 (M1
58–66
), which simultaneously lead to oligoclonal expansions, including the usage of a single identical VA12-JA29 clonotype in all eight older donors. The Vα repertoire of older individuals also had longer CDR3 regions with increased usage of G/A runs, whose molecular flexibility may enhance T cell receptor (TCR) promiscuity. Collectively, these results suggest that CD8 memory T cell responses to nonpersistent viruses like IAV in humans are dynamic, and with aging there is a reduced diversity but a preferential retention of T cell repertoires with features of enhanced cross-reactivity.

IMPORTANCE
With increasing age, the immune system undergoes drastic changes, and older individuals have declined resistance to infections. Vaccinations become less effective, and infection with influenza A virus in older individuals is associated with higher morbidity and mortality. Here, we questioned whether T cell responses directed against the highly conserved HLA-A2-restricted M1
58–66
peptide of IAV evolves with increasing age. Specifically, we postulated that CD8 T cell repertoires narrow with recurrent exposure and may thus be less efficient in response to new infections with new strains of IAV. Detailed analyses of the VA and VB TCR repertoires simultaneously showed a direct correlation between increasing age and narrowing of the TCR repertoire. Features of the TCRs indicated potentially enhanced cross-reactivity in all older donors. In summary, T cell repertoire analysis in older individuals may be useful as one of the predictors of protection after vaccination.