bluuebunny/crossref_metadata_2025_split huggingface dataset:
Screening for prostate cancer in New Zealand general practice
Authors: Zuzana Obertová , Ross Lawrenson , Fraser Hodgson , Charis Brown , Alistair Stewart , Leanne Tyrie , Michael Holmes , Peter Gilling 
Published: July 2013

Objective To ascertain the rates and patterns of prostate-specific antigen (PSA) screening in New Zealand men. Methods The study population included 35,958 men aged 40+ years, with no prior diagnosis of prostate cancer, enrolled in 31 general practices in the Midland Cancer Network Region of New Zealand in 2010. Computerized practice records were searched for information, including reasons for testing, for men with elevated PSA test results in 2010. PSA results for 2007–2010 were obtained from community laboratories. Screened men were identified and screening rates calculated by age. Results Of 9344 men who underwent one or more PSA tests in 2010, 84.9% were classified as having been screened. The overall screening rate was 22.1%, with 24.4% of men aged 70+ years screened. Elevated PSA levels were found in 2.1% of screened men. Of the men screened in 2010, 57.3% had had a screening test in the previous three years. Conclusions General practitioners in New Zealand commonly screen men (including those aged 70+) for prostate cancer, despite the lack of trial evidence that these men would benefit from screening. The value of annual PSA testing in men with previous normal PSA levels is unproven. Longer intervals between tests would be appropriate.
Fluorcalcioroméite, (Ca,Na)2Sb25+(O,OH)6F, a new roméite-group mineral from Starlera mine, Ferrera, Grischun, Switzerland: description and crystal structure
Authors: Atencio D. , Ciriotti M. E. , Andrade M. B. 
Published: July 2013

AbstractFluorcalcioroméite, (Ca,Na)2Sb25+(O,OH)6F, is a new roméite-group, pyrochlore-supergroup mineral (IMA 2012-093), from Starlera mine, Ferrera, Hinterrhein district, Grischun, Switzerland. The intimately associated minerals are: braunite, hematite, calcite, quartz and, rarely, wallkilldellite-(Mn). It occurs as euhedral octahedra, untwinned, from 0.1 to 1 mm in size. The crystals are yellow to orange and translucent; the streak is white, and the lustre is vitreous to resinous. It is non-fluorescent under ultraviolet light. Mohs' hardness is ∼5½, tenacity is brittle. Cleavage is not observed; fracture is conchoidal. The calculated density is 5.113 g/cm3. The mineral is isotropic, ncalc. = 1.826. The Raman spectrum is dominated by bands of Sb–O octahedral bond stretching and O–Sb–O bending modes. The chemical composition (n = 13) is (by wavelength-dispersive spectroscopy (WDS), H2O calculated by difference, wt.%): Na2O 4.11, CaO 15.41, MnO 0.54, CuO 0.01, ZnO 0.01, PbO 0.02, Al2O3 0.10, FeO 0.50, Y2O3 0.07, SiO2 0.04, TiO2 0.01, UO2 0.01, Sb2O5 76.18, WO3 0.78, F 2.79, H2O 0.59, O = F–1.17, total 100.00. The empirical formula, based on 2 cations at the B site, is (Ca1.16Na0.56☐0.22Fe0.032+ Mn0.032+)Σ2.00(Sb5+1.98Al0.01W0.01)Σ2.00O6[F0.62(OH)0.28O0.06☐0.04]Σ1.00. The strongest eight X-ray powder-diffraction lines [d in Å (I)(hkl)] are: 5.934(81)(111), 3.102(20)(311), 2.969(100)(222), 2.572(6)(400), 1.979(7)(333), 1.818(8)(440), 1.551(15)(622), and 1.484(5)(444). The crystal structure refinement (R1 = 0.0106) gave the following data: cubic, Fdm, a = 10.2987(8) Å, V = 1092.31(15) Å3, Z = 8. Unit-cell parameters refined from the powder data are: a = 10.284(2), V = 1087.7(7) Å3, Z = 8.
Weissite from Gambatesa mine, Val Graveglia, Liguria, Italy: occurrence, composition and determination of the crystal structure
Authors: Bindi L. , Carbone C. , Belmonte D. , Cabella R. , Bracco R. 
Published: July 2013

AbstractWeissite, Cu2–xTe (x ≈ 0.21), a very rare copper telluride, occurs in a sample from the Gambatesa mine, Val Graveglia, Liguria, Italy, where it occurs as purplish black anhedral grains up to 0.1 mm in length and shows a black streak. No cleavage is observed and the Vickers hardness (VHN100) is 142 kg/mm2. Weissite is dark bluish black, weakly pleochroic, and moderately anisotropic in bluish tints. Reflectance percentages in air for Rmin and Rmax are 37.0, 38.4 (471.1 nm), 33.2, 34.2 (548.3 nm), 31.2, 32.1 (586.6 nm), and 28.6, 31.0 (652.3 nm), respectively.Weissite is trigonal and belongs to the space group P3m1 with the following unit-cell parameters: a = 8.3124(7) Å, c = 21.546(1) Å, V = 1289.3(2) Å3, and Z = 24. Electron microprobe analyses gave the chemical formula (Cu1.62Ag0.04Au0.04Fe0.04Sb0.04)Σ=1.78(Te0.96S0.02Se0.02). The crystal structure has been solved and refined to R = 1.95%. It consists of Cu and Te polyhedra forming complex crystal-chemical environments as is typical of many intermetallic compounds. The exceedingly short bond distances observed among the metals are discussed in relation to other copper tellurides and pure metals.
Description and crystal structure of domerockite, Cu4(AsO4)(AsO3OH)(OH)3·H2O, a new mineral from the Dome Rock Mine, South Australia
Authors: Elliott P. , Kolitsch U. , Willis A. C. , Libowitzky E. 
Published: July 2013

AbstractDomerockite, Cu4(AsO4)2(AsO3OH)(OH)3·H2O, is a new mineral from the Dome Rock Mine, South Australia. It occurs as aggregates of bluish green, equant to short prismatic and tabular crystals up to 0.3 mm long and 0.2 mm across. Domerockite is translucent, with a vitreous lustre and pale green streak. It displays no fluorescence under UV irradiation. The mineral is brittle with an uneven fracture, a Mohs hardness of ∼3 and a calculated density of 4.44 g/cm3 (based on the structure refinement). Optically, it is biaxial negative, with α = 1.798(4), β = 1.814(4), γ = 1.817(4), 2Vcalc. = 46°; pleochroism is very weak; X pale greenish yellow, Y greenish blue, Z greenish blue; absorption X < Y = Z; orientation is uncertain. Chemical analysis by electron microprobe gave CuO 52.04, ZnO 0.78, BaO 0.11, As2O537.67, P2O50.32, SiO20.24, H2O 8.84, total 100.00 wt.%, with H2O calculated by difference. The empirical chemical formula is (Cu3.94, Zn0.06)Σ4.00H0.91(As1.97, P0.03, Si0.02)Σ2.02O8(OH)3.00˙H2O based on 12 oxygen atoms.Domerockite is triclinic, space group P, with a = 5.378(11), b = 8.962(18) c = 9.841(2) Å, α = 75.25(3), β = 83.56(3), γ = 79.97(3)°, V = 450.5(16) Å3 and Z = 2. The eight strongest lines in the X-ray powder diffraction pattern are [d (Å), (I)(hkl)]: 4.716 (30)(101, 002, 111), 3.697 (25)(121), 3.605 (30)(120, 12), 3.119 (60)(12), 3.073 (100)(1), 2.856 (40)(02, 030), 2.464 (50)(212, 13), 2.443 (40)(014). The crystal structure of domerockite has been solved by direct methods and refined to an R index of 7.44% using 2635 observed reflections. The structure comprises [Cuφ4] (φ = O, OH) chains of edge-sharing sharing, distorted octahedra that extend along [10] and are decorated by AsO4 tetrahedra to form sheets in the (010) plane. Dimers of edge-sharing [CuO4(OH)(H2O)] octahedra share corners with dimers of edge-sharing [CuO4(OH)] square pyramids to form zigzag chains which extend along [101]. The chains lie between and link to the sheets by sharings corners of octahedra, square pyramids and tetrahedra to form a heteropolyhedral framework.
Identification of both copy number variation-type and constant-type core elements in a large segmental duplication region of the mouse genome
Authors: Umemori Juzoh , Mori Akihiro , Ichiyanagi Kenji , Uno Takeaki , Koide Tsuyoshi 
Published: July 2013

Abstract

Background
Copy number variation (CNV), an important source of diversity in genomic structure, is frequently found in clusters called CNV regions (CNVRs). CNVRs are strongly associated with segmental duplications (SDs), but the composition of these complex repetitive structures remains unclear.

Results
We conducted self-comparative-plot analysis of all mouse chromosomes using the high-speed and large-scale-homology search algorithm SHEAP. For eight chromosomes, we identified various types of large SD as tartan-checked patterns within the self-comparative plots. A complex arrangement of diagonal split lines in the self-comparative-plots indicated the presence of large homologous repetitive sequences. We focused on one SD on chromosome 13 (SD13M), and developed SHEPHERD, a stepwise ab initio method, to extract longer repetitive elements and to characterize repetitive structures in this region. Analysis using SHEPHERD showed the existence of 60 core elements, which were expected to be the basic units that form SDs within the repetitive structure of SD13M. The demonstration that sequences homologous to the core elements (>70% homology) covered approximately 90% of the SD13M region indicated that our method can characterize the repetitive structure of SD13M effectively. Core elements were composed largely of fragmented repeats of a previously identified type, such as long interspersed nuclear elements (LINEs), together with partial genic regions. Comparative genome hybridization array analysis showed that whereas 42 core elements were components of CNVR that varied among mouse strains, 8 did not vary among strains (constant type), and the status of the others could not be determined. The CNV-type core elements contained significantly larger proportions of long terminal repeat (LTR) types of retrotransposon than the constant-type core elements, which had no CNV. The higher divergence rates observed in the CNV-type core elements than in the constant type indicate that the CNV-type core elements have a longer evolutionary history than constant-type core elements in SD13M.

Conclusions
Our methodology for the identification of repetitive core sequences simplifies characterization of the structures of large SDs and detailed analysis of CNV. The results of detailed structural and quantitative analyses in this study might help to elucidate the biological role of one of the SDs on chromosome 13.
Synergetic effect of yeast cell-surface expression of cellulase and expansin-like protein on direct ethanol production from cellulose
Authors: Nakatani Yuki , Yamada Ryosuke , Ogino Chiaki , Kondo Akihiko 
Published: July 2013

Abstract

Background
Numerous studies have examined the direct fermentation of cellulosic materials by cellulase-expressing yeast; however, ethanol productivity in these systems has not yet reached an industrial level. Certain microorganisms, such as the cellulolytic fungus Trichoderma reesei, produce expansin-like proteins, which have a cellulose-loosening effect that may increase the breakdown of cellulose. Here, to improve the direct conversion of cellulose to ethanol, yeast Saccharomyces cerevisiae co-displaying cellulase and expansin-like protein on the cell surface were constructed and examined for direct ethanol fermentation performance.

Results
The cellulase and expansin-like protein co-expressing strain showed 246 mU/g-wet cell of phosphoric acid swollen cellulose (PASC) degradation activity, which corresponded to 2.9-fold higher activity than that of a cellulase-expressing strain. This result clearly demonstrated that yeast cell-surface expressed cellulase and expansin-like protein act synergistically to breakdown cellulose. In fermentation experiments examining direct ethanol production from PASC, the cellulase and expansin-like protein co-expressing strain produced 3.4 g/L ethanol after 96 h of fermentation, a concentration that was 1.4-fold higher than that achieved by the cellulase-expressing strain (2.5 g/L).

Conclusions
The PASC degradation and fermentation ability of an engineered yeast strain was markedly improved by co-expressing cellulase and expansin-like protein on the cell surface. To our knowledge, this is the first report to demonstrate the synergetic effect of co-expressing cellulase and expansin-like protein on a yeast cell surface, which may be a promising strategy for constructing direct ethanol fermenting yeast from cellulose.
A single mutation in the core domain of the lac repressor reduces leakiness
Authors: Gatti-Lafranconi Pietro , Dijkman Willem P , Devenish Sean RA , Hollfelder Florian 
Published: July 2013

Abstract

Background
The lac operon provides cells with the ability to switch from glucose to lactose metabolism precisely when necessary. This metabolic switch is mediated by the lac repressor (LacI), which in the absence of lactose binds to the operator DNA sequence to inhibit transcription. Allosteric rearrangements triggered by binding of the lactose isomer allolactose to the core domain of the repressor impede DNA binding and lift repression. In Nature, the ability to detect and respond to environmental conditions comes at the cost of the encoded enzymes being constitutively expressed at low levels. The readily-switched regulation provided by LacI has resulted in its widespread use for protein overexpression, and its applications in molecular biology represent early examples of synthetic biology. However, the leakiness of LacI that is essential for the natural function of the lac operon leads to an increased energetic burden, and potentially toxicity, in heterologous protein production.

Results
Analysis of the features that confer promiscuity to the inducer-binding site of LacI identified tryptophan 220 as a target for saturation mutagenesis. We found that phenylalanine (similarly to tryptophan) affords a functional repressor that is still responsive to IPTG. Characterisation of the W220F mutant, LacIWF, by measuring the time dependence of GFP production at different IPTG concentrations and at various incubation temperatures showed a 10-fold reduction in leakiness and no decrease in GFP production. Cells harbouring a cytotoxic protein under regulatory control of LacIWF showed no decrease in viability in the early phases of cell growth. Changes in responsiveness to IPTG observed in vivo are supported by the thermal shift assay behaviour of purified LacIWF with IPTG and operator DNA.

Conclusions
In LacI, long-range communications are responsible for the transmission of the signal from the inducer binding site to the DNA binding domain and our results are consistent with the involvement of position 220 in modulating these. The mutation of this single tryptophan residue to phenylalanine generated an enhanced repressor with a 10-fold decrease in leakiness. By minimising the energetic burden and cytotoxicity caused by leakiness, LacIWF constitutes a useful switch for protein overproduction and synthetic biology.
A comparison of polyethylene wear between cobalt-chrome ball heads and alumina ball heads after total hip arthroplasty: a 10-year follow-up
Authors: Wang ShiJun , Zhang ShuDong , Zhao YuChi 
Published: July 2013

Abstract

Study design
This is a retrospective study comparing polyethylene wear between ceramic ball heads and metal ball heads in total hip arthroplasty.

Background
The ceramic-on-polyethylene bearing option has been introduced as an alternative to metal-on-polyethylene to minimize polyethylene wear debris and reduce subsequent osteolysis and aseptic loosening. However, the reported data were debatable. We designed this retrospective study to compare polyethylene wear between alumina ceramic ball heads and cobalt-chrome ball heads.

Methods
Bilateral simultaneous primary total hip arthroplasty was performed in 22 patients between January 2002 and December 2002, with one side using metal-on-polyethylene bearing surface and the other side using alumina ceramic-on-polyethylene bearing surface. After 10 years of follow-up, the wear rate of polyethylene liner on both sides was measured using the Dorr method and compared.

Results
The annual wear rate of the polyethylene liner was 0.133 mm with a standard deviation of 0.045 in the metal-on-polyethylene group and 0.056 mm with a standard deviation of 0.032 in the ceramic-on-polyethylene group. The wear rate per year was significantly lower in the ceramic-on-polyethylene group (p < 0.001).

Conclusions
Although the implication is still controversial, our study showed that the use of ceramic head lowered the liner wear rate.

Clinical relevance
Ceramic is harder and more resistant to scratching than cobalt-chrome. By increasing polyethylene liner survivorship and decreasing potential osteolytic response and aseptic loosening, ceramic head is a better alternative than cobalt-chrome head.
Alkaline twin-screw extrusion pretreatment for fermentable sugar production
Authors: Liu Chao , van der Heide Evert , Wang Haisong , Li Bin , Yu Guang , Mu Xindong 
Published: July 2013

Abstract

Background
The inevitable depletion of fossil fuels has resulted in an increasing worldwide interest in exploring alternative and sustainable energy sources. Lignocellulose, which is the most abundant biomass on earth, is widely regarded as a promising raw material to produce fuel ethanol. Pretreatment is an essential step to disrupt the recalcitrance of lignocellulosic matrix for enzymatic saccharification and bioethanol production. This paper established an ATSE (alkaline twin-screw extrusion pretreatment) process using a specially designed twin-screw extruder in the presence of alkaline solution to improve the enzymatic hydrolysis efficiency of corn stover for the production of fermentable sugars.

Results
The ATSE pretreatment was conducted with a biomass/liquid ratio of 1/2 (w/w) at a temperature of 99°C without heating equipment. The results indicated that ATSE pretreatment is effective in improving the enzymatic digestibility of corn stover. Sodium hydroxide loading is more influential factor affecting both sugar yield and lignin degradation than heat preservation time. After ATSE pretreatment under the proper conditions (NaOH loading of 0.06 g/g biomass during ATSE and 1 hour heat preservation after extrusion), 71% lignin removal was achieved and the conversions of glucan and xylan in the pretreated biomass can reach to 83% and 89% respectively via subsequent enzymatic hydrolysis (cellulase loading of 20 FPU/g-biomass and substrate consistency of 2%). About 78% of the original polysaccharides were converted into fermentable sugars.

Conclusions
With the physicochemical functions in extrusion, the ATSE method can effectively overcome the recalcitrance of lignocellulose for the production of fermentable sugars from corn stover. This process can be considered as a promising pretreatment method due to its relatively low temperature (99°C), high biomass/liquid ratio (1/2) and satisfied total sugar yield (78%), despite further study is needed for process optimization and cost reduction.
Role of biomarkers in the management of antibiotic therapy: an expert panel review II: clinical use of biomarkers for initiation or discontinuation of antibiotic therapy
Authors: Quenot Jean-Pierre , Luyt Charles-Edouard , Roche Nicolas , Chalumeau Martin , Charles Pierre-Emmanuel , Claessens Yann-Eric , Lasocki Sigismond , Bedos Jean-Pierre , Péan Yves , Philippart François , Ruiz Stéphanie , Gras-Leguen Christele , Dupuy Anne-Marie , Pugin Jérôme , Stahl Jean-Paul , Misset Benoit , Gauzit Rémy , Brun-Buisson Christian 
Published: July 2013

Abstract
Biomarker-guided initiation of antibiotic therapy has been studied in four conditions: acute pancreatitis, lower respiratory tract infection (LRTI), meningitis, and sepsis in the ICU. In pancreatitis with suspected infected necrosis, initiating antibiotics best relies on fine-needle aspiration and demonstration of infected material. We suggest that PCT be measured to help predict infection; however, available data are insufficient to decide on initiating antibiotics based on PCT levels. In adult patients suspected of community-acquired LRTI, we suggest withholding antibiotic therapy when the serum PCT level is low (<0.25 ng/mL); in patients having nosocomial LRTI, data are insufficient to recommend initiating therapy based on a single PCT level or even repeated measurements. For children with suspected bacterial meningitis, we recommend using a decision rule as an aid to therapeutic decisions, such as the Bacterial Meningitis Score or the Meningitest®; a single PCT level ≥0.5 ng/mL also may be used, but false-negatives may occur. In adults with suspected bacterial meningitis, we suggest integrating serum PCT measurements in a clinical decision rule to help distinguish between viral and bacterial meningitis, using a 0.5 ng/mL threshold. For ICU patients suspected of community-acquired infection, we do not recommend using a threshold serum PCT value to help the decision to initiate antibiotic therapy; data are insufficient to recommend using PCT serum kinetics for the decision to initiate antibiotic therapy in patients suspected of ICU-acquired infection. In children, CRP can probably be used to help discontinue therapy, although the evidence is limited. In adults, antibiotic discontinuation can be based on an algorithm using repeated PCT measurements. In non-immunocompromised out- or in- patients treated for RTI, antibiotics can be discontinued if the PCT level at day 3 is < 0.25 ng/mL or has decreased by >80-90%, whether or not microbiological documentation has been obtained. For ICU patients who have nonbacteremic sepsis from a known site of infection, antibiotics can be stopped if the PCT level at day 3 is < 0.5 ng/mL or has decreased by >80% relative to the highest level recorded, irrespective of the severity of the infectious episode; in bacteremic patients, a minimal duration of therapy of 5 days is recommended.
Brønsted Basicity of Solute Butylamine in an Aprotic Ionic Liquid Investigated by Potentiometric Titration
Authors: Fujii Kenta , Hashimoto Kei , Sakai Takamasa , Umebayashi Yasuhiro , Shibayama Mitsuhiro 
Published: July 2013

Abstract
The quantitative Brønsted basicity of butylamine (BuNH2) in the typical aprotic ionic liquid (IL) 1-ethyl-3-methylimidazolium bis(trifluoromethanesulfonyl)amide, [C2mIm+][TFSA−], is reported. Potentiometric titration was performed for BuNH2 in the aprotic IL to experimentally determine the acid dissociation constant (pKa) for butylammonium (BuNH3+). The pKa value was estimated to be 16.6(1), and it was found that the value is significantly larger than that in aqueous solution (pKa = 10.6).