bluuebunny/crossref_metadata_2025_split huggingface dataset:
Modelling metabolic CO2 evolution – a fresh perspective on respiration
Authors: SWEETLOVE LEE J. , WILLIAMS THOMAS C. R. , CHEUNG C. Y. MAURICE , RATCLIFFE R. GEORGE 
Published: March 2013

AbstractRespiration is a major contributor to net exchange of CO2 between plants and the atmosphere and thus an important aspect of the vegetation component of global climate change models. However, a mechanistic model of respiration is lacking, and so here we explore the potential for flux balance analysis (FBA) to predict cellular CO2 evolution rates. Metabolic flux analysis reveals that respiration is not always the dominant source of CO2, and that metabolic processes such as the oxidative pentose phosphate pathway (OPPP) and lipid synthesis can be quantitatively important. Moreover, there is considerable variation in the metabolic origin of evolved CO2 between tissues, species and conditions. Comparison of FBA‐predicted CO2 evolution profiles with those determined from flux measurements reveals that FBA is able to predict the metabolic origin of evolved CO2 in different tissues/species and under different conditions. However, FBA is poor at predicting flux through certain metabolic processes such as the OPPP and we identify the way in which maintenance costs are accounted for as a major area of improvement for future FBA studies. We conclude that FBA, in its standard form, can be used to predict CO2 evolution in a range of plant tissues and in response to environment.
Geological and Geochemical Characteristics of the Huangshilao Stratabound Gold Deposit in the Tongguanshan Orefield, Tongling, East‐Central China
Authors: Li Gongjian , Wang Qingfei , Wang Jiaqi , Fang Qilin 
Published: March 2013

AbstractThe Huangshilao gold deposit (>13.5 t Au) is comprised of stratabound pyrite‐dominant massive sulfide ores, and is distinguished from the skarn Cu, Au, and Cu–Au deposits that are dominant in the Tongguanshan orefield, Tongling, east‐central China. The stratabound orebodies are situated along flexural slip faults along the unconformity between the Upper Devonian Wutong and the Upper Carboniferous Huanglong Formations. The ores, dominated by crystallized pyrite, colloform pyrite, and pyrrhotite, are systematically sampled from the underground stopes along strike drifts. The δ34S values of ore sulfides yield a wide variation from −11.3 to 11.4‰, but mostly within 4–8‰, corresponding to the δ34S range (3.4–8.7‰) of the Yanshanian Tongguanshan and Tianshan quartz diorite intrusions in the Tongguanshan orefield, suggesting a magmatic dominated sulfur source. Few obvious negative δ34S values are induced by an involvement of sedimentation‐related biogenic sulfur. The wide δ34S variation denotes an incongruent physical and chemical interaction of the two sources. Combined analysis of gold contents and sulfur isotopes of the sulfides show that the magmatic hydrothermal solution provides primary metals despite a small quantity that may have been contributed by the sedimentary pyrites. The hydrothermal alteration, thermal metamorphism, trace element concentration in pyrites, and existing aeromagnetic data jointly suggest that the hydrothermal fluid migrated vertically from an intrusion below, along the flexural slip faults, but not laterally from the nearby outcrop of Tianshan stock.
Characteristics of Mineralizing Fluids of the Darreh‐Zerreshk and Ali‐Abad Porphyry Copper Deposits, Central Iran, Determined by Fluid Inclusion Microthermometry
Authors: Zarasvandi Alireza , Liaghat Sassan , Lentz David , Hossaini Mahboobeh 
Published: March 2013

AbstractThe Darreh‐Zereshk (DZ) and Ali‐Abad (AB) porphyry copper deposits are located in southwest of the Yazd city, central Iran. These deposits occur in granitoid intrusions, ranging in composition from quartz monzodiorite through granodiorite to granite. The ore‐hosting intrusions exhibit intense hydrofracturing that lead to the formation of quartz‐sulfide veinlets. Fluid inclusions in hydrothermal quartz in these deposits are classified as a mono‐phase vapor type (Type I), liquid‐rich two phase (liquid + vapor) type (Type IIA), vapor‐rich two phase (vapor + liquid) type (Type IIB), and multi‐phase (liquid + vapor + halite + sylvite + hematite + chalcopyrite and pyrite) type (Types III). Homogenization temperatures (Th) and salinity data are presented for fluid inclusions from hydrothermal quartz veinlets associated with potassic alteration and other varieties of hypogene mineralization. Ore precipitation occurred between 150° to >600°C from low to very high salinity (1.1–73.9 wt% NaCl equivalent) aqueous fluids. Two stages of hydrothermal activity characterized are recognized; one which shows relatively high Th and lower salinity fluid (Type IIIa; Th(L‐V) > Tm(NaCl)); and one which shows lower Th and higher salinity (Type IIIb; Th(L‐V) < Tm(NaCl)). The high Th(L‐V) and salinities of Type IIIa inclusions are interpreted to represent the initial existence of a dense fluid of magmatic origin. The coexistence of Type IIIb, Type I and Type IIB fluid inclusions suggest that these inclusions resulted either from trapping of boiling fluids and/or represent two immiscible fluids. These processes probably occurred as the result of pressure fluctuations from lithostatic to hydrostatic conditions under a pressure of 200 to 300 bar. Dilution of these early fluids by meteoritic water resulted in lower temperatures and low to moderate salinity (<20 wt% NaCl equiv.) fluids (Type IIA). Fluid inclusion analysis reveals that the hydrothermal fluid, which formed mineralized quartz veinlets in the rocks with potassic alteration, had temperatures of ∼500°C and salinity ∼50 wt% NaCl equiv. Cryogenic SEM‐EDS analyses of frozen and decrepitated ore‐bearing fluids trapped in the inclusions indicate the fluids were dominated with NaCl, and KCl with minor CaCl2.
Mean central corneal thickness and corneal power measurements in pigmented and white rabbits using Visante optical coherence tomography and ATLAS corneal topography
Authors: Wang Xiaogang , Dong Jing , Wu Qiang 
Published: March 2013

AbstractObjectiveTo document central corneal thickness (CCT) and power measurements in pigmented and white rabbits using Visante anterior segment optical coherence tomography (AS‐OCT) and the Humphrey ATLAS Corneal Topography System (HACTS).Animal studiedFourteen female rabbits (seven pigmented and seven white rabbits) were involved in this study.ProcedureTwenty‐eight eyes underwent AS‐OCT and HACTS examination. Central corneal thickness, corneal power in the steepest and flattest meridians, astigmatism, pupil diameter (PD), and white‐to‐white (WTW) were calculated.ResultsThe CCT was 390 ± 14.2 and 373 ± 7.2 μm for pigmented and white rabbits, respectively. The CCT values showed statistical difference between the two breeds (P = 0.017). The corneal power in the steepest meridian was 44.6 ± 1.9 Diopter (D) in pigmented rabbits and 47.8 ± 1.5 D in white rabbits. The corneal power in the flattest meridian was 44.0 ± 2.1 D in pigmented rabbits and 47.4 ± 1.5 D in white rabbits. The astigmatism, PD, and WTW values were 0.6 ± 0.22 D, 7.9 ± 0.9, and 14.5 ± 0.1 mm in pigmented rabbits, respectively. The corresponding values in white rabbits were 0.4 ± 0.23 D, 7.5 ± 0.5, and 13.5 ± 0.2 mm. There was a statistically significant difference in corneal power in the steepest and flattest meridians and for WTW. No such difference was observed for astigmatism or PD between them.ConclusionsDifferences exist in the CCT, corneal power, and WTW between 5‐month‐old pigmented and white rabbits. Such difference should be considered when designing cornea‐related experiments in rabbits.
Decision support systems in water resources in the demarcated region of Douro – case study in Pinhão river basin, Portugal
Authors: Fernandes Luís Filipe Sanches , Marques Maria João , Oliveira Paula Cristina , Moura João Paulo 
Published: March 2013

AbstractThis paper puts forward the importance of decision support systems (DSS) for the planning and management of water resources. A case study of the Pinhão river basin, in Portugal, is presented. Given the importance of vineyards in the Douro region, it is important to determine if water availability will be enough to meet present and future water demands. In order to answer this question, DSS tools were used to assess different scenarios. The MIKE BASIN software was used in the hydrographical basin of Pinhão river, assisted by a geographic information system, GIS, which allowed the modelling of the basin, both temporally and spatially, facilitating the visualisation and interpretation of results. According to the attained results, it was verified that, at present, the hydrographical basin meets the considered water needs. The DSS proved to be an important tool to assist the decision‐making process in the studied river basin.
The Evolving Field of Human Papillomavirus Receptor Research: a Review of Binding and Entry
Authors: Raff Adam B. , Woodham Andrew W. , Raff Laura M. , Skeate Joseph G. , Yan Lisa , Da Silva Diane M. , Schelhaas Mario , Kast W. Martin 
Published: March 2013

ABSTRACT
Human papillomaviruses (HPVs) infect epithelia and can lead to the development of lesions, some of which have malignant potential. HPV type 16 (HPV16) is the most oncogenic genotype and causes various types of cancer, including cervical, anal, and head and neck cancers. However, despite significant research, our understanding of the mechanism by which HPV16 binds to and enters host cells remains fragmented. Over several decades, many HPV receptors and entry pathways have been described. This review puts those studies into context and offers a model of HPV16 binding and entry as a framework for future research. Our model suggests that HPV16 binds to heparin sulfate proteoglycans (HSPGs) on either the epithelial cell surface or basement membrane through interactions with the L1 major capsid protein. Growth factor receptors may also become activated through HSPG/growth factor/HPV16 complexes that initiate signaling cascades during early virion-host cell interactions. After binding to HSPGs, the virion undergoes conformational changes, leading to isomerization by cyclophilin B and proprotein convertase-mediated L2 minor capsid protein cleavage that increases L2 N terminus exposure. Along with binding to HSPGs, HPV16 binds to α6 integrins, which initiate further intracellular signaling events. Following these primary binding events, HPV16 binds to a newly identified L2-specific receptor, the annexin A2 heterotetramer. Subsequently, clathrin-, caveolin-, lipid raft-, flotillin-, cholesterol-, and dynamin-independent endocytosis of HPV16 occurs.
Comparative Analysis of Chlamydia psittaci Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range
Authors: Read Timothy D. , Joseph Sandeep J. , Didelot Xavier , Liang Brooke , Patel Lisa , Dean Deborah 
Published: March 2013

ABSTRACT

Chlamydia psittaci
is an obligate intracellular bacterium. Interest in
Chlamydia
stems from its high degree of virulence as an intestinal and pulmonary pathogen across a broad range of animals, including humans.
C. psittaci
human pulmonary infections, referred to as psittacosis, can be life-threatening, which is why the organism was developed as a bioweapon in the 20th century and is listed as a CDC biothreat agent. One remarkable recent result from comparative genomics is the finding of frequent homologous recombination across the genome of the sexually transmitted and trachoma pathogen
Chlamydia trachomatis
. We sought to determine if similar evolutionary dynamics occurred in
C. psittaci
. We analyzed 20
C. psittaci
genomes from diverse strains representing the nine known serotypes of the organism as well as infections in a range of birds and mammals, including humans. Genome annotation revealed a core genome in all strains of 911 genes. Our analyses showed that
C. psittaci
has a history of frequently switching hosts and undergoing recombination more often than
C. trachomatis
. Evolutionary history reconstructions showed genome-wide homologous recombination and evidence of whole-plasmid exchange. Tracking the origins of recombinant segments revealed that some strains have imported DNA from as-yet-unsampled or -unsequenced
C. psittaci
lineages or other
Chlamydiaceae
species. Three ancestral populations of
C. psittaci
were predicted, explaining the current population structure. Molecular clock analysis found that certain strains are part of a clonal epidemic expansion likely introduced into North America by South American bird traders, suggesting that psittacosis is a recently emerged disease originating in New World parrots.

IMPORTANCE
Chlamydia psittaci
is classified as a CDC biothreat agent based on its association with life-threatening lung disease, termed psittacosis, in humans. Because of the recent remarkable findings of frequent recombination across the genome of the human sexually transmitted and ocular trachoma pathogen
Chlamydia trachomatis
, we sought to determine if similar evolutionary dynamics occur in
C. psittaci
. Twenty
C. psittaci
genomes were analyzed from diverse strains that may play a pathogenic role in human disease. Evolution of the strains revealed genome-wide recombination occurring at a higher rate than for
C. trachomatis
. Certain strains were discovered to be part of a recent epidemic clonal expansion originating in South America. These strains may have been introduced into the United States from South American bird traders, suggesting that psittacosis is a recently emerged disease originating in New World parrots. Our analyses indicate that
C. psittaci
strains have a history of frequently switching hosts and undergoing recombination.
Inhibition of Viral Pathogenesis and Promotion of the Septic Shock Response to Bacterial Infection by IRF-3 Are Regulated by the Acetylation and Phosphorylation of Its Coactivators
Authors: Chattopadhyay Saurabh , Fensterl Volker , Zhang Ying , Veleeparambil Manoj , Wetzel Jaime L. , Sen Ganes C. 
Published: March 2013

ABSTRACT

Interferon (IFN) is required for protecting mice from viral pathogenesis; reciprocally, it mediates the deleterious septic shock response to bacterial infection. The critical transcription factor for IFN induction, in both cases, is IRF-3, which is activated by TLR3 or RIG-I signaling in response to virus infection and TLR4 signaling in response to bacterial infection. Here, we report that IRF-3’s transcriptional activity required its coactivators, β-catenin and CBP, to be modified by HDAC6-mediated deacetylation and protein kinase C isozyme β (PKC-β)-mediated phosphorylation, respectively, so that activated nuclear IRF-3 could form a stable transcription initiation complex at the target gene promoters. β-Catenin bridges IRF-3 and CBP, and the modifications were required specifically for the interaction between β-catenin and CBP but not β-catenin and IRF-3. Consequently, like IRF-3
−/−
mice, HDAC6
−/−
mice were resistant to bacterial lipopolysaccharide-induced septic shock. Conversely, they were highly susceptible to pathogenesis caused by Sendai virus infection. Thus, HDAC6 is an essential component of the innate immune response to microbial infection.

IMPORTANCE
It is important to understand how we protect ourselves against microbial infection. Specific receptors present in mammalian cells, called Toll-like receptors, are assigned to sense different microbial chemicals, such as bacterial lipopolysaccharides or viral double-stranded RNA. Activation of these receptors leads to the activation of a critical transcription factor, IRF-3, which drives the induced synthesis of interferon, a secreted protein required for our protection. Here, we report that interferon synthesis is regulated not only by IRF-3 activation but also by activation of two proteins, β-catenin and CBP, which function together with IRF-3. β-Catenin is activated by its deacetylation by HDAC6, and CBP is activated by its phosphorylation by protein kinases C isozyme β (PKC-β). These regulations are operative not only in cell cultures but also in mice.
Salvage of distal non-target coil embolization with stent placement and intravenous eptifibatide in a ruptured, unsecured, atypical aneurysm
Authors: Janjua Nazli , Bulic Sebina , Tan Benedict C , Panichpisal Kessarin , Miller John 
Published: March 2013

IntroductionSmall aneurysms may be challenging to embolize. In cases of subarachnoid hemorrhage (SAH) where treatment is delayed, physicians may have to balance the risks of certain required therapies (antiplatelet agents) with the risk of rerupture. We describe a case of a technically challenging anterior cerebral artery aneurysm requiring eptifibatide infusion prior to definitive aneurysm treatment.Case reportA 57-year-old woman with SAH, underwent coil embolization of a small fenestrated A1–A2 junction aneurysm. The procedure was complicated by downstream coil migration which was then treated with Enterprise stent placement in the pericallosal artery. This required subsequent infusion of a glycoprotein IIb/IIIa inhibitor until the aneurysm could be repaired surgically.ConclusionsRevascularization with a stent in a distal cerebral vessel may salvage inadvertent coil migration. Although it is undesirable to administer antiplatelet agents to patients with SAH, in these circumstances short acting agents may be used.
Myocardial function in premature infants: a longitudinal observational study
Authors: Eriksen Beate Horsberg , Nestaas Eirik , Hole Torstein , Liestøl Knut , Støylen Asbjørn , Fugelseth Drude 
Published: March 2013

ObjectivesGestational and chronological age may have an impact on myocardial function. We studied the longitudinal changes of the atrioventricular tissue Doppler velocities in premature infants through the neonatal transitional period and at expected term and explored the reproducibility of the measurements.DesignProspective, observational and longitudinal cohort study.SettingTwo-centre study, from a secondary and a tertiary neonatal intensive care unit.Participants55 infants (29 males) with gestational age 31–35 weeks and birth weight 1127–2836 grams.Primary and secondary outcome measuresPulsed-wave atrioventricular left, septum and right ventricular annulus tissue Doppler systolic (S′), early diastolic (E′) and late diastolic (A′) velocities measured by repeated echocardiographic examinations days 1, 2 and 3 and at expected term.ResultsAll velocities increased significantly from the neonatal period to expected term (p<0.001). We found a significant correlation between gestational age and right-sided S′, E′ and A′ on day 1 (Pearson correlation 0.32–0.46, p<0.05), for S′ in all three walls and septal E′ and A′ on day 2 (Pearson correlation 0.27–0.49, p<0.05). There was a moderate linear correlation between left ventricle end-diastolic length and septal and right S′ at term and for septal E′ and A′ at day 1 (Pearson correlation 0.30–0.56, p<0.05). We found no correlation between heart rate and tissue Doppler velocities when controlling for the effect of fusion. Continuous positive airway pressure showed moderate effect where as persistence of the ductus arteriosus showed no effect on the tissue Doppler velocities. The E′/A′ relationship was consistently reversed throughout the study with frequently fused diastolic tissue velocity signals.ConclusionsPulsed-wave atrioventricular annulus tissue Doppler velocities were related to gestational age, postnatal age and ventricular size. Right ventricle velocities showed more pronounced increase with postnatal maturation than left ventricle velocities. The degree of E′/A′ fusion influenced the diastolic tissue Doppler velocities and should be reported if present.
Would primary healthcare professionals prescribe a polypill to manage cardiovascular risk? A qualitative interview study
Authors: Virdee Satnam K , Greenfield Sheila M , Fletcher Kate , McManus Richard J , Hobbs F D Richard , Mant Jonathan 
Published: March 2013

ObjectivesA ‘polypill’ containing both blood pressure-lowering and cholesterol-lowering drugs could prevent up to 80% of cardiovascular disease events. Since little is known about the attitudes of primary healthcare professionals to use of such a pill for cardiovascular disease prevention, this study aimed to investigate opinions.DesignSemistructured interviews were conducted with participants. A qualitative description approach was used to analyse and report the results.SettingParticipants were recruited from nine primary care practices in Birmingham.ParticipantsSixteen healthcare professionals (11 primary care physicians and 5 practice nurses) were selected through purposive sampling to maximise variation of characteristics.Outcome measuresOutcome measures for this study were: the attitude of healthcare professionals towards the use of a polypill for primary and secondary cardiovascular disease prevention; their views on monitoring the drug; and the factors influencing their willingness to prescribe the medication.ResultsHealthcare professionals expressed considerable concern over using a polypill for primary prevention for all people over a specific age, although there was greater acceptance of its use for secondary prevention. Regularly monitoring patients taking the polypill was deemed essential. Evidence of effectiveness, patient risk level and potential medicalisation were key determinants in willingness to prescribe such a pill.ConclusionsPrimary healthcare professionals have significant concerns about the use of a polypill, particularly in the prevention of cardiovascular disease in people who are not regarded as being at ‘high risk’. If a population-based polypill strategy is to be successfully implemented, healthcare professionals will need to be convinced of the potential benefits of a drug-based population approach to prevention.
A simplified economic approach to thyroid FNA cytology and surgical intervention in thyroid nodules
Authors: Poller David Nigel , Kandaswamy Prashanth 
Published: March 2013

ObjectiveFew studies have modelled the economics of thyroid FNA.MethodsA simple spreadsheet economic model for delivery of thyroid fine needle aspiration (FNA) cytology is described using the UK Royal College of Pathologists’ Classification for thyroid FNA which is based on The Bethesda System for Reporting Thyroid Cytopathology.ResultsWe show an estimated 27.8% cost treatment reduction per patient if low rates of non-diagnostic for cytological diagnosis (Thy 1) and neoplasm possible atypia/non-diagnostic (Thy 3a) are achieved, which require rapid onsite FNA adequacy assessment of aspiration samples. If we assume that the number of thyroid FNAs performed in the UK annually is around 500 per million, and the UK population is 62 million, this could save the UK National Health Service significant sums, as the additional cost per patient treated in this model varies from £781 for a scenario with ultrasound guided FNA and inclinic cell adequacy assessment to £998 where aspirates are taken in conventional fashion without any inclinic adequacy assessment.ConclusionsThis model makes a strong economic case for the introduction of rapid onsite assessment of thyroid FNA across cancer networks, to improve the diagnostic efficacy of thyroid FNA.