bluuebunny/crossref_metadata_2025_split huggingface dataset:
It may be harder than we thought, but political diversity will (still) improve social psychological science
Authors: Crawford Jarret T. , Duarte José L. , Haidt Jonathan , Jussim Lee , Stern Charlotta , Tetlock Philip E. 
Published: September 2015

AbstractIn our target article, we made four claims: (1) Social psychology is now politically homogeneous; (2) this homogeneity sometimes harms the science; (3) increasing political diversity would reduce this damage; and (4) some portion of the homogeneity is due to a hostile climate and outright discrimination against non-liberals. In this response, we review these claims in light of the arguments made by a diverse group of commentators. We were surprised to find near-universal agreement with our first two claims, and we note that few challenged our fourth claim. Most of the disagreements came in response to our claim that increasing political diversity would be beneficial. We agree with our critics that increasing political diversity may be harder than we had thought, but we explain why we still believe that it is possible and desirable to do so. We conclude with a revised list of 12 recommendations for improving political diversity in social psychology, as well as in other areas of the academy.
Reduction in cytoplasmic lipid content in bovine embryos cultured in vitro with linoleic acid in semi-defined medium is correlated with increases in cryotolerance
Authors: Accorsi Mônica F. , Leão Beatriz Caetano da Silva , Rocha-Frigoni Nathália Alves de Souza , Perri Silvia Helena Venturoli , Mingoti Gisele Zoccal 
Published: September 2015

SummaryWe examined whether culturing embryos with linoleic acid (LA) in semi-defined medium reduces lipid accumulation and improves cryosurvival after vitrification. Embryos were cultured with LA (100 μM) and a semi-defined medium was used during in vitro culture (IVC), in which the fetal calf serum was substituted by bovine serum albumin (BSA). There was a reduction (P < 0.05) in the embryonic development rate (Control: 25.8% versus LA: 18.5%), but the proposed system was effective in promoting the decrease (P = 0.0130) in the intracellular lipid content (Control: 27.3 ± 0.7 versus LA: 24.6 ± 0.7 arbitrary fluorescence units of embryos stained with the fluorescent dye Nile Red), consequently increasing (P = 0.0490) the embryo survival after 24h of culture post-warming (Control: 50.0% versus LA: 71.7%). The results question the criteria used to evaluate the efficiency of an in vitro production system specifically with relation to the maximum number of blastocysts produced and suggest that might be more appropriate to improve the desired characteristics of embryos generated in accordance with the specific purpose of in vitro embryo production, commercial or scientific. In conclusion, supplying LA to serum-free culture medium was found to adversely affect the rates of embryo development to the blastocyst stage, but significantly reduced embryo lipid accumulation and improved cryopreservation survival.
Oogenesis inLaetacara araguaiae(Ottoni and Costa, 2009) (Labriformes: Cichlidae)
Authors: dos Santos-Silva Amanda Pereira , de Siqueira-Silva Diógenes Henrique , Ninhaus-Silveira Alexandre , Veríssimo-Silveira Rosicleire 
Published: September 2015

SummaryWe aimed to analyze the oogenesis of adult females of the cichlid fishLaetacara araguaiae. The specimens’ gonads were removed and processed for light and transmission electron microscopy. Oogenesis inL. araguaiaeshowed the following characteristics: a germinal epithelium with three types of oogonia (A-undifferentiated, A-differentiated and B-oogonia), oocytes at meiotic prophase stage and ovarian follicle formation. Oocytes showing primary growth with pre-vitellogenic and cortical alveolus were observed. Similar to data for other cichlids, oocytes in secondary growth or vitellogenesis were characterized by the initial deposition of yolk microgranules. The event that characterizes the maturation stage is nucleolus migration, also called the germinal vesicle, to the oocyte periphery in the direction of the micropyle. The follicular complex undergoes several changes throughout the oocyte stages. To the best of our knowledge this study is the first to describeL. araguaiaeoogenesis. Moreover, this study is the first step to better understand the reproductive biology of this species, which shows great potential for use as an ornamental fish.
Effect of elevated temperature on fecundity and reproductive timing in the coral Acropora digitifera
Authors: Paxton Camille W. , Baria Maria Vanessa B. , Weis Virginia M. , Harii Saki 
Published: September 2015

SummaryThe synchrony of spawning is of paramount importance to successful coral reproduction. The precise timing of spawning is thought to be controlled by a set of interacting environmental factors, including regional wind field patterns, timing of the sunset, and sea surface temperatures (SST). Climate change is resulting in increased SST, which is causing physiological stress in corals and could also be altering spawning synchrony and timing. In this study, we examined the effect of increasing seawater temperature by 2°C for 1 month prior to the predicted spawning time on reproduction in the coral Acropora digitifera. This short period of elevated temperature caused spawning to advance by 1 day. In animals incubated at elevated temperature, egg number per egg bundle did not change, however, egg volume significantly decreased as did sperm number. Our results indicate that temperature is acting both as a proximate cue to accelerate timing and as a stressor on gametogenesis to reduce fecundity. This finding suggests that increasing SSTs could play a dramatic role in altering reproductive timing and the success of corals in an era of climate change.
A population-based study on the association between the intake of soft drinks and periodontal disease in Taiwanese adults aged 35–44 years (KCIS no. 33)
Authors: Fann Jean Ching-Yuan , Lai Hongmin , Chiu Sherry Yueh-Hsia , Yen Amy Ming-Fang , Chen Sam Li-Sheng , Chen Hsiu-Hsi 
Published: September 2015

AbstractObjectiveTo elucidate the association between the intake of soft drinks and periodontal disease (PD) among Taiwanese middle-aged adults.DesignThe cross-sectional design was employed to assess a dose–response relationship between the intake of soft drinks and PD after controlling for relevant confounding factors, with adjusted odds ratios obtained from a multivariate logistic regression model.SettingKeelung Community-based Integrated Screening (KCIS) programme, Keelung, Taiwan.SubjectsParticipants (n 10 213) aged 35–44 years who had undergone oral checks for PD between 2005 and 2009.ResultsA dose–response relationship between the intake of soft drinks and elevated risk for PD defined by community periodontal index ≥3 (the current status of PD) was noted (P=0·02 by trend test). Compared with infrequent intake of soft drinks (≤2 times/week), the adjusted OR increased from 1·05 (95 % CI 0·92, 1·20) for the frequency of 3–4 times/week to 1·17 (95 % CI 1·03, 1·34) for the frequency of ≥5 times/week. A similar trend (P<0·01) was also observed for PD defined by loss of attachment ≥1 (representing the long-term cumulative gum damage due to PD).ConclusionsA dose–response relationship between the intake frequency of soft drinks and PD was observed in Taiwanese middle-aged adults. Such evidence could be used in health promotion to support reductions in soft drink intake.
Rise and fall of mercury (Hg) pollution in sediment cores of the Thames Estuary, London, UK
Authors: Vane Christopher H. , Beriro Darren J. , Turner Grenville H. 
Published: September 2015

ABSTRACTFifty six sediment cores were collected along a 100 km longitudinal transect of the Thames estuary. Total Hg ranged from 0.01 to 12.07 mg/kg, with a mean of 2.10 mg/kg (n=351). Concentrations of the toxic metal decreased downstream from London to the outer estuary and were positively correlated to total organic carbon (TOC) content. Many Hg profiles showed a clear rise, peak and fall, reflecting changing anthropogenic input through time. Surface concentrations averaged 1.27 mg/kg, confirming the effectiveness of recent environmental legislation and improved river management. Sediments at >40 cm depth from London reaches of the river (Waterloo Bridge, Cuckolds Point (Rotherhithe), Butlers Wharf (Tower Bridge), Millwall, Deptford and Millennium Dome) were highly contaminated, with levels of Hg of >7 mg/kg. The outer Thames had lower Hg, with the exception of Rainham, Crossness and Cliffe. Benchmarking against UK guidelines for the disposal of dredged material revealed that 88 samples from 21 sites exceeded the 3 mg/kg criteria (unsuitable for disposal at sea); 173 fell between 0.3 and 3 mg/kg (further assessment required); and 90 were of no concern. Using Hg as a generic pollution marker, the tidal Thames is one of the world's most contaminated river–estuarine sediment systems.
Importance of salt fingering for new nitrogen supply in the oligotrophic ocean
Authors: Fernández-Castro B. , Mouriño-Carballido B. , Marañón E. , Chouciño P. , Gago J. , Ramírez T. , Vidal M. , Bode A. , Blasco D. , Royer S.-J. , Estrada M. , Simó R. 
Published: September 2015

AbstractThe input of new nitrogen into the euphotic zone constrains the export of organic carbon to the deep ocean and thereby the biologically mediated long-term CO2 exchange between the ocean and atmosphere. In low-latitude open-ocean regions, turbulence-driven nitrate diffusion from the ocean’s interior and biological fixation of atmospheric N2 are the main sources of new nitrogen for phytoplankton productivity. With measurements across the tropical and subtropical Atlantic, Pacific and Indian oceans, we show that nitrate diffusion (171±190 μmol m−2 d−1) dominates over N2 fixation (9.0±9.4 μmol m−2 d−1) at the time of sampling. Nitrate diffusion mediated by salt fingers is responsible for ca. 20% of the new nitrogen supply in several provinces of the Atlantic and Indian Oceans. Our results indicate that salt finger diffusion should be considered in present and future ocean nitrogen budgets, as it could supply globally 0.23–1.00 Tmol N yr−1 to the euphotic zone.
A flexible codon in genomically recoded Escherichia coli permits programmable protein phosphorylation
Authors: Pirman Natasha L. , Barber Karl W. , Aerni Hans R. , Ma Natalie J. , Haimovich Adrian D. , Rogulina Svetlana , Isaacs Farren J. , Rinehart Jesse 
Published: September 2015

AbstractBiochemical investigation of protein phosphorylation events is limited by inefficient production of the phosphorylated and non-phosphorylated forms of full-length proteins. Here using a genomically recoded strain of E. coli with a flexible UAG codon we produce site-specific serine- or phosphoserine-containing proteins, with purities approaching 90%, from a single recombinant DNA. Specifically, we synthesize human MEK1 kinase with two serines or two phosphoserines, from one DNA template, and demonstrate programmable kinase activity. Programmable protein phosphorylation is poised to help reveal the structural and functional information encoded in the phosphoproteome.
Telomeres are partly shielded from ultraviolet-induced damage and proficient for nucleotide excision repair of photoproducts
Authors: Parikh Dhvani , Fouquerel Elise , Murphy Connor T. , Wang Hong , Opresko Patricia L. 
Published: September 2015

AbstractUltraviolet light induces cyclobutane pyrimidine dimers (CPD) and pyrimidine(6–4)pyrimidone photoproducts, which interfere with DNA replication and transcription. Nucleotide excision repair (NER) removes these photoproducts, but whether NER functions at telomeres is unresolved. Here we use immunospot blotting to examine the efficiency of photoproduct formation and removal at telomeres purified from UVC irradiated cells at various recovery times. Telomeres exhibit approximately twofold fewer photoproducts compared with the bulk genome in cells, and telomere-binding protein TRF1 significantly reduces photoproduct formation in telomeric fragments in vitro. CPD removal from telomeres occurs 1.5-fold faster than the bulk genome, and is completed by 48 h. 6–4PP removal is rapidly completed by 6 h in both telomeres and the overall genome. A requirement for XPA protein indicates the mechanism of telomeric photoproduct removal is NER. These data provide new evidence that telomeres are partially protected from ultraviolet irradiation and that NER preserves telomere integrity.
Emergence of multicluster chimera states
Authors: Yao Nan , Huang Zi-Gang , Grebogi Celso , Lai Ying-Cheng 
Published: September 2015

AbstractA remarkable phenomenon in spatiotemporal dynamical systems is chimera state, where the structurally and dynamically identical oscillators in a coupled networked system spontaneously break into two groups, one exhibiting coherent motion and another incoherent. This phenomenon was typically studied in the setting of non-local coupling configurations. We ask what can happen to chimera states under systematic changes to the network structure when links are removed from the network in an orderly fashion but the local coupling topology remains invariant with respect to an index shift. We find the emergence of multicluster chimera states. Remarkably, as a parameter characterizing the amount of link removal is increased, chimera states of distinct numbers of clusters emerge and persist in different parameter regions. We develop a phenomenological theory, based on enhanced or reduced interactions among oscillators in different spatial groups, to explain why chimera states of certain numbers of clusters occur in certain parameter regions. The theoretical prediction agrees well with numerics.
Unexpected observation of splitting of skyrmion phase in Zn doped Cu2OSeO3
Authors: Wu H. C. , Wei T. Y. , Chandrasekhar K. D. , Chen T. Y. , Berger H. , Yang H. D. 
Published: September 2015

AbstractPolycrystalline (Cu1−xZnx)2OSeO3 (0 ≤ x ≤ 0.2) samples were synthesized using solid-state reaction and characterized by X-ray diffraction (XRD). The effect of Zn doping upon saturation magnetization (MS) indicates that the Zn favors to occupying Cu(II) square pyramidal crystallographic site. The AC susceptibility (χ′ac) was measured at various temperatures (χ′ac–T) and magnetic field strengths (χ′ac–H). The Zn doping concentration is found to affect greatly the M-T and χ′ac-T. The skyrmion phase has been inferred from the χ′ac-H data and then indicated within the H-T phase diagrams for various Zn doping concentrations. The striking and unexpected observation is that the skyrmion phase region becomes split upon Zn doping concentration. Interestingly, second conical boundary accompanied by second skyrmion phase was also observed from dχ′ac/dH vs. H curves. Atomic site disorder created by the chemical doping modulates the delicate magnetic interactions via change in the Dzyaloshinskii-Moriya (DM) vector of distorted Cu(II) square pyramidal, thereby splitting of skyrmion phase might occur. These findings illustrate the potential of using chemical and atomic modification for tuning the temperature and field dependence of skyrmion phase of Cu2OSeO3.
Ice Regelation: Hydrogen-bond extraordinary recoverability and water quasisolid-phase-boundary dispersivity
Authors: Zhang Xi , Huang Yongli , Sun Peng , Liu Xinjuan , Ma Zengsheng , Zhou Yichun , Zhou Ji , Zheng Weitao , Sun Chang Q. 
Published: September 2015

AbstractRegelation, i.e., ice melts under compression and freezes again when the pressure is relieved, remains puzzling since its discovery in 1850’s by Faraday. Here we show that hydrogen bond (O:H-O) cooperativity and its extraordinary recoverability resolve this anomaly. The H-O bond and the O:H nonbond possesses each a specific heat ηx(T/ΘDx) whose Debye temperature ΘDx is proportional to its characteristic phonon frequency ωx according to Einstein’s relationship. A superposition of the ηx(T/ΘDx) curves for the H-O bond (x = H, ωH ~ 3200 cm−1) and the O:H nonbond (x = L, ωL ~ 200 cm−1, ΘDL = 198 K) yields two intersecting temperatures that define the liquid/quasisolid/solid phase boundaries. Compression shortens the O:H nonbond and stiffens its phonon but does the opposite to the H-O bond through O-O Coulomb repulsion, which closes up the intersection temperatures and hence depress the melting temperature of quasisolid ice. Reproduction of the Tm(P) profile clarifies that the H-O bond energy EH determines the Tm with derivative of EH = 3.97 eV for bulk water and ice. Oxygen atom always finds bonding partners to retain its sp3-orbital hybridization once the O:H breaks, which ensures O:H-O bond recoverability to its original state once the pressure is relieved.
Monoamine content during the reproductive cycle of Perna perna depends on site of origin on the Atlantic Coast of Morocco
Authors: Klouche Mounia S. , De Deurwaerdère Philippe , Dellu-Hagedorn Françoise , Lakhdar-Ghazal Nouria , Benomar Soumaya 
Published: September 2015

AbstractBivalve molluscs such as Perna perna display temporal cycles of reproduction that result from the complex interplay between endogenous and exogenous signals. The monoamines serotonin, dopamine and noradrenaline represent possible endocrine and neuronal links between these signals allowing the molluscs to modulate reproductive functions in conjunction with environmental constraints. Here, we report a disruption of the reproductive cycle of mussels collected from two of three sites along the Moroccan atlantic coast soiled by industrial or domestic waste. Using high pressure liquid chromatography, we show that the temporal pattern of monoamine content in the gonads, pedal and cerebroid ganglia varied throughout the reproductive cycle (resting, developing, maturing, egg-laying) of mussels from the unpolluted site. Marked modification of monoamine tissue content was found between sites, notably in noradrenaline content of the gonads. Discriminant statistics revealed a specific impact of mussel location on the temporal variations of noradrenaline and serotonin levels in gonads and cerebroid ganglia. Correlation analyses showed profound and temporal changes in the monoamine content between organs and ganglia, at the two sites where the reproduction was disrupted. We suggest that environmental constraints lead to profound changes of monoaminergic systems, which thereby compromises the entry of mussels into their reproductive cycle.
Bacteriophages of wastewater foaming-associated filamentous Gordonia reduce host levels in raw activated sludge
Authors: Liu Mei , Gill Jason J. , Young Ry , Summer Elizabeth J. 
Published: September 2015

AbstractFilamentous bacteria are a normal and necessary component of the activated sludge wastewater treatment process, but the overgrowth of filamentous bacteria results in foaming and bulking associated disruptions. Bacteriophages, or phages, were investigated for their potential to reduce the titer of foaming bacteria in a mixed-microbial activated sludge matrix. Foaming-associated filamentous bacteria were isolated from activated sludge of a commercial wastewater treatment plan and identified as Gordonia species by 16S rDNA sequencing. Four representative phages were isolated that target G. malaquae and two un-named Gordonia species isolates. Electron microscopy revealed the phages to be siphophages with long tails. Three of the phages - GordTnk2, Gmala1 and GordDuk1 - had very similar ~76 kb genomes, with >93% DNA identity. These genomes shared limited synteny with Rhodococcus equi phage ReqiDocB7 and Gordonia phage GTE7. In contrast, the genome of phage Gsput1 was smaller (43 kb) and was not similar enough to any known phage to be placed within an established phage type. Application of these four phages at MOIs of 5–15 significantly reduced Gordonia host levels in a wastewater sludge model by approximately 10-fold as compared to non-phage treated reactors. Phage control was observed for nine days after treatment.
Epitopes in α8β1 and other RGD-binding integrins delineate classes of integrin-blocking antibodies and major binding loops in α subunits
Authors: Nishimichi Norihisa , Kawashima Nagako , Yokosaki Yasuyuki 
Published: September 2015

AbstractIdentification of epitopes for integrin-blocking monoclonal antibodies (mAbs) has aided our understanding of structure-function relationship of integrins. We mapped epitopes of chicken anti-integrin-α8-subunit-blocking mAbs by mutational analyses, examining regions that harboured all mapped epitopes recognized by mAbs against other α-subunits in the RGD-binding-integrin subfamily. Six mAbs exhibited blocking function and these mAbs recognized residues on the same W2:41-loop on the top-face of the β-propeller. Loop-tips sufficiently close to W2:41 (<25 Å) contained within a footprint of the mAbs were mutated and the loop W3:34 on the bottom face was identified as an additional component of the epitope of one antibody, clone YZ5. Binding sequences on the two loops were conserved in virtually all mammals and that on W3:34 was also conserved in chickens. These indicate 1) YZ5 binds both top and bottom loops and the binding to W3:34 is by interactions to conserved residues between immunogen and host species, 2) five other blocking mAbs solely bind to W2:41 and 3) the α8 mAbs would cross-react with most mammals. Comparing with the mAbs against the other α-subunits of RGD-integrins, two classes were delineated; those binding to “W3:34 and an top-loop” and “solely W2:41”, accounting for 82% of published RGD-integrin-mAbs.
Cavity-based architecture to preserve quantum coherence and entanglement
Authors: Man Zhong-Xiao , Xia Yun-Jie , Lo Franco Rosario 
Published: September 2015

AbstractQuantum technology relies on the utilization of resources, like quantum coherence and entanglement, which allow quantum information and computation processing. This achievement is however jeopardized by the detrimental effects of the environment surrounding any quantum system, so that finding strategies to protect quantum resources is essential. Non-Markovian and structured environments are useful tools to this aim. Here we show how a simple environmental architecture made of two coupled lossy cavities enables a switch between Markovian and non-Markovian regimes for the dynamics of a qubit embedded in one of the cavity. Furthermore, qubit coherence can be indefinitely preserved if the cavity without qubit is perfect. We then focus on entanglement control of two independent qubits locally subject to such an engineered environment and discuss its feasibility in the framework of circuit quantum electrodynamics. With up-to-date experimental parameters, we show that our architecture allows entanglement lifetimes orders of magnitude longer than the spontaneous lifetime without local cavity couplings. This cavity-based architecture is straightforwardly extendable to many qubits for scalability.
Visualization of GaN surface potential using terahertz emission enhanced by local defects
Authors: Sakai Yuji , Kawayama Iwao , Nakanishi Hidetoshi , Tonouchi Masayoshi 
Published: September 2015

AbstractWide-gap semiconductors have received significant attention for their advantages over existing semiconductors in energy-efficient power devices. To realize stable and reliable wide-gap semiconductor devices, the basic physical properties, such as the electric properties on the surface and at the interface, should be revealed. Here, we report visualization of terahertz (THz) emission from the surface of GaN, which is excited by ultraviolet femtosecond laser pulses. We found that the THz emission is enhanced by defects related to yellow luminescence and this phenomenon is explained through the modification of band structures in the surface depletion layer owing to trapped electrons at defect sites. Our results demonstrate that the surface potential in a GaN surface could be detected by laser-induced THz emission. Moreover, this method enables feasible evaluation of the distribution of non-radiative defects, which are undetectable with photoluminescence and it contributes to the realization normally-off GaN devices.