bluuebunny/crossref_metadata_2025_split huggingface dataset:
Natural radioactivity and trace element composition of natural clays used as cosmetic products in the Greek market
Authors: Papadopoulos A. , Giouri K. , Tzamos E. , Filippidis A. , Stoulos S. 
Published: March 2014

AbstractSeven commercial cosmetic clays having different colour (white, green, pink and red) available in pharmacies and herbalists’ shops in the Greek market have been examined for their trace element concentrations (Ag, As, Ba, Be, Cd, Ce, Co, Cr, Cs, Cu, Ga, Hf, Hg, La, Mo, Ni, Pb, Rb, Sb, Sc, Se, Sr, Tl, V, Y, Zn and Zr). According to EC Regulation 1223/2009 the presence of As, Be, Cd, Cr, Hg, Ni, P, Pb, Sb, Se, Te, Tl, Zr and their compounds is prohibited in cosmetics. The most abundant trace elements in the white clays were P (330 μg/g), Pb (220 μg/g) and Zr (11 μg/g) and for the green clays were P (1250 μg/g), As (43 μg/g), Cr (31 μg/g), Pb (30 μg/g) and Ni (23 μg/g). Red and pink clays had lower concentrations of these elements than their white and green counterparts. The green clays are three times enriched in As and the kaolinite-rich white clays are nine times enriched in Pb compared to the Average Shale. The main mineral phase in the white clays is either kaolinite or calcite, in green clays smectite, in pink clay kaolinite and talc and in red clays it is vermiculite. The specific activities of 238U, 226Ra, 228Ra, 228Th and 40K were determined by γ-ray spectroscopy. The kaolinite-rich white clays are more enriched in 238U-series radionuclides (238U and 226Ra) than the smectitic green clays. In contrast, the green clays were more enriched in 232Th-series radionuclides (228Ra and 228Th) and 40K than the white clays.
Geochemistry of halloysite-7Å formation from plagioclase in trachyandesite rocks from Limnos Island, Greece
Authors: Papoulis D. , Komarneni S. , Panagiotaras D. 
Published: March 2014

AbstractTrachyandesite rocks, occurring over an area of about 1 km2in the southwest part of Limnos Island, Greece, are altered mainly to halloysite. The samples were collected and analysed by polarizing microscopy, powder X-ray diffraction (XRD), scanning electron microscopy (SEM) and chemical analysis. The alteration of plagioclase to halloysite follows seven discrete stages that are described in detail. The geochemical evaluation of the data shows enrichment of the lightREE(LREE) over heavyREE(HREE) as expressed by the (La/Yb)n ratio. TheΣLREErange from 206.44 to 272.30, while the sum ofHREEvaries from 11.01 to 26.26. The (La/Yb)n ratio ranges from 9.72 to 27.64. Fractionation amongLREEexpressed as (La/Sm)n and between middleREE(MREE) andHREEis shown as (Tb/Yb)n ratios. The most altered rocks close to the fault zone have high (Tb/Yb)n ratios and low (La/Sm)n and Eu/Eu* ratios. Although mineralogy and clay mineral textures indicate hydrothermal genesis of halloysite, the geochemical data are not conclusive due to a secondary weathering effect.
Characterization of two forms of sepiolite and related Mg-rich clay minerals from Yenidoğ an (Sivrihisar, Turkey)
Authors: Yeniyol M. 
Published: March 2014

AbstractAn Early Pliocene sedimentary succession in the Yenidoğan area, Sivrihisar, Turkey, consists of sepiolite, stevensite, kerolite, dolomite and magnesite. The geology, mineralogy and geochemistry of the succession was examined by extensive field work along several trenches and a representative measured section, followed by X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), scanning electron microscopy (SEM), thermal, and chemical analyses.Structurally, two distinct forms of sepiolites were distinguished by XRD: (a) well crystallized sepiolite with a 110 reflection at 12.07–12.3 Å , and (b) poorly crystallized sepiolite in which the 110 reflection occurs at 12.7–13.0 Å (denoted as sepiolite-13Å ). Differences in crystal chemistry, thermal and morphological properties of these forms, the vibrational spectra and XRD characterization of the related phyllosilicates were also documented.Stevensite, kerolite and sepiolite were formed by direct precipitation from alkaline lake water rich in Mg and Si. Sepiolite-13Å was probably formed by transformation from precursor smectite via dissolution-precipitation, more likely during early diagenesis. Environmental conditions such as ion concentration, salinity and variations in pH may have controlled the formation of the phyllosilicates.
Vysokýite, U4+[AsO2(OH)2]4·4H2O, a new mineral from Jáchymov, Czech Republic
Authors: Plášil J. , Hloušek J. , Škoda R. , Novák M. , Sejkora J. , Čejka J. , Veselovský F. , Majzlan J. 
Published: March 2014

AbstractVysokýite, U4+[(AsO2(OH)2]4(H2O)4(IMA 2012–067), was found growing on an altered surface of massive native As in the Geschieber vein, Jáchymov ore district, Western Bohemia, Czech Republic. The new mineral was found in association with běhounekite, štěpite, kaatialaite, arsenolite, claudetite and gypsum. It forms extremely fibrous light-green crystals up to 8 mm long. Crystals have an alabaster lustre and a greenish-white to greyish streak. Vysokýite is brittle with uneven fracture and perfect cleavage along (100) and (001); the Mohs hardness is ∼2. A density of 3.393 g/cm3was calculated using the empirical formula and unit-cell parameters obtained from a single-crystal diffraction experiment. Vysokýite is non-fluorescent under short or long wavelength UV radiation. It is colourless under the microscope, measured refractive indices are α' = 1.617(3), γ' = 1.654(3); the estimated optical orientation is α' ∼X, γ' ∼Z. The average of five spot wavelength dispersive spectroscopy (WDS) analyses is 29.44 UO2, 1.03 SiO2, 48.95 As2O5, 0.12 SO3, 15.88 H2O (calc.), total 95.42 wt.%. The empirical formula of vysokýite (based on 20 O a.p.f.u.) is U1.00[AsO2(OH)2]3.90(SiO4)0.16(SO4)0.01·4H2O. The As–O–H and O–H vibrations dominate in the Raman spectrum. Vysokýite is triclinic, space groupP, witha= 10.749(2),b= 5.044(3),c= 19.1778(7) Å, α = 89.872(15)°, β = 121.534(15)°, γ = 76.508(15)°, andV= 852.1(6) Å3,Z= 2 and Dcalc= 3.34 g·cm–3. The strongest diffraction peaks in the X-ray powder diffraction pattern are [dobsin Å(Irel.)(hkl)]: 8.872(100)(100), 8.067(50)(002), 6.399(7)(10), 4.773(6)(10), 3.411(10)(30), 3.197(18)(31). The crystal structure of vysokýite was solved from single-crystal X-ray diffraction data by the charge-flipping method and refined toR1= 0.0595 based on 2718 unique observed reflection, and towR2= 0.1160 for all 4173 unique reflections. The structure of vysokýite consists of UO8square antiprisms sharing all of their vertices with 8 As-tetrahedra to form infinite chains parallel to [010]. These chains are linked by hydrogen bonds involving terminal (OH) groups of the double-protonated As-tetrahedra and molecules of H2O located between the chains. The new mineral is named in honour of Arnošt Vysoký (1823–1872), the former chief of the Jáchymov mines and smelters, chemist and metallurgist.
Cannonite [Bi2O(SO4)(OH)2] from Alfenza (Crodo, Italy): crystal structure and morphology
Authors: Capitani G. C. , Catelani T. , Gentile P. , Lucotti A. , Zema M. 
Published: March 2014

AbstractCanonite from Alfenza grows as crowded, radiating, acicular aggregates covering bismuthinite crystals. Individual crystals have a lozenge-shaped habit on {010}, the presumed cleavage plane of cannonite. Crystal structure refinements in the P21/c space group of two single crystals led to the following cell parameters: a = 7.7196(5) Å, b = 13.8856(9), c = 5.6980(4), b = 109.174(1)º (R1 = 0.0424); and a = 7.7100(8), b = 13.8717(14), c = 5.6939(6), b = 109.155(2)º (R1 = 0.0438). Hydrogen atoms were also localized in the density-difference Fourier map and refined with soft restraints on the bond distances. Raman and IR spectroscopy confirm the presence of OH groups and the absence of molecular water, and deliver OH···O geometry wholly comparable with the structure refinement. Electron microprobe analyses revealed no significant levels of elements other than those expected in the ideal formula except fluorine which was present up to 0.14 a.p.f.u. The crystal structure can be described in terms of anion-centred OBi4 edge-sharing tetrahedra forming chains running parallel to z and strongly cemented along x by isolated SO4 tetrahedra. Each OBi4 tetrahedron is further connected along y by OH groups, making walls of composition Bi4O2(SO4)2(OH)4 parallel to (010). These walls are tied to each other along y by fewer Bi–O–S bridges and weaker OH···O bonds.
Dervillite, Ag2AsS2, from Lengenbach quarry, Binn valley, Switzerland: occurrence and crystal structure
Authors: Bindi L. , Nestola F. , De Battisti L. , Guastoni A. 
Published: March 2014

AbstractDervillite, As2AsS2, has been found in a sample from the Lengenbach quarry in the Binn Valley, Valais, Switzerland. It occurs as very rare crystals up to 200 μm across on jordanite. Dervillite is opaque with a metallic lustre and shows a dark brown streak. The structure is monoclinic, space groupPc, witha= 9.6155(7),b= 12.9331(8),c= 6.8616(5) A ˚ ,b= 99.352(8)º,V= 842.0(1) Å3andZ= 8. In the crystal structure [R1= 0.060 for 2370 reflections withI> 2σ(I)], silver adopts various coordinations extending from quasi linear to quasi tetrahedral whereas arsenic forms very peculiar crystal-chemical environments, such as As(S2As) and As(S2AsAg). Such metalloid–metalloid or metal–metalloid bonds account for the apparent charge imbalance observed in the chemical formula.
Chiral edge-shared octahedral chains in liskeardite, [(Al,Fe)32(AsO4)18(OH)42(H2O)22]·52H2O, an open framework mineral with a pharmacoalumite-related structure
Authors: Grey I. E. , Mumme W. G. , Macrae C. M. , Caradoc-Davies T. , Price J. R. , Rumsey M. S. , Mills S. J. 
Published: March 2014

AbstractThe type specimen of liskeardite, (Al, Fe)3AsO4(OH)6·5H2O, from the Marke Valley Mine, Liskeard District, Cornwall, has been reinvestigated. The revised composition from electron microprobe analyses and structure refinement is [Al29.2Fe2.8(AsO4)18(OH)42(H2O)22]·52H2O. The crystal structure was determined using synchrotron data collected on a 2 μm diameter fibre at 100 K. Liskeardite has monoclinic symmetry, space group I2, with the unit-cell parameters a = 24.576(5), b = 7.754(2) Å, c = 24.641(5) Å, and β = 90.19(1)º. The structure was refined to R = 0.059 for 9769 reflections with I > 3σ(I). It is of an open framework type in which intersecting polyhedral slabs parallel to (101) and (10) form 17.4 Å × 17.4 Å channels along [010], with water molecules occupying the channels. Small amounts (<1 wt.%) of Na, K and Cu are probably adsorbed at the channel walls The framework comprises columns of pharmacoalumite-type, intergrown with chiral chains of six cis edge-shared octahedra. It can be described in terms of cubic close packing, with vacancies at both the anion and cation sites. The compositional and structural relationships between liskeardite and pharmacoalumite are discussed and a possible mechanism for liskeardite formation is presented.
Mineralogy of the P2-West ‘Kimberlite’, Wajrakarur kimberlite field, Andhra Pradesh, India: kimberlite or lamproite?
Authors: Kaur Gurmeet , Mitchell R. H. 
Published: March 2014

AbstractA detailed mineralogical examination of representative material from the P2-West 'kimberlite' located in the Wajrakarur Kimberlite Field (India) demonstrates that significant differences exist between these rocks and archetypal hypabyssal kimberlite. The intrusion consists of an olivine-phyric facies which has been transected by, and includes clasts of, a consanguineous phlogopite-rich pegmatitic facies. The olivine-rich parts of P2-West are relatively fresh and consist of euhedral-to-subhedral microphenocrystal olivine set in a groundmass of fine-grained anhedral monticellite, amoeboid apatite, and subhedral-to-euhedral perovskite within a partially chloritized-to-fresh phlogopite-rich mesostasis. The rock lacks the abundant olivine macrocrysts characteristic of kimberlite. Monticellite crystals are commonly partially or completely replaced by pectolite and hydrogarnet. Similar material occurs as irregular aggregates randomly scattered throughout the groundmass. The groundmass, in contrast to that of hypabyssal kimberlites, is relatively poor in spinels. Atoll spinels are absent, with the majority of spinels occurring principally as mantles upon microphenocrystal olivine. Disaggregated cumulate-like assemblages of intergrown anhedral perovskite and spinel are common. Spinel compositions are unlike those of kimberlites and their evolutionary trend is similar to that of lamproite and lamprophyre spinels. The pegmatitic facies of the intrusion are highly and pervasively altered, and characterized by the presence of large clasts, veins, and irregular aggregates consisting of large (1–5 mm) crystals of pinkish-bronze Al-poor phlogopite intergrown with and/or including: apatite; pectolite-hydrogarnet pseudomorphs after an unidentified euhedral phase; chlorite laths; barytolamprophyllite; perovskite; tausonite; diverse Sr-Ba-carbonates; and baryte. The presence of barytolamprophyllite and tausonite are typical of potassic undersaturated alkaline rocks and have never been reported from kimberlite; however, neither feldspar nor feldspathoids are present in P2-West. Micas in fresh and altered rocks are Al2O3- and BaO-poor, and exhibit compositional evolutionary trends towards tetraferriphlogopite rather than kinoshitalite. On the basis of these mineralogical data it is suggested that P2-West represents an unusual lamproite-like intrusion which has undergone extensive hydrothermal deuteric alteration and should not be considered a bona fide kimberlite.
A single-crystal neutron and X-ray diffraction study of a Li, Be-bearing brittle mica
Authors: Gatta G. D. , Nénert G. , Guastella G. , Lotti P. , Guastoni A. , Rizzato S. 
Published: March 2014

AbstractThe crystal chemistry of a meso-octahedral Li,Be-bearing mica from the Harding pegmatite (Dixon, Taos County, New Mexico, USA) has been investigated by constant-wavelength single-crystal neutron diffraction at 20 K, single-crystal X-ray diffraction at 100 K and inductively coupled plasma-atomic emission spectrometry (ICP-AES). The chemical composition based on ICP-AES analysis leads to the following chemical formula (calculated on the basis of 12 oxygen atoms):Ca(Na0.26K0.04Ca0.69)∑0.99M(Li0.29Mg0.03Fe0.023+Al1.78)∑2.12T(Al1.73Be0.16Si2.11)S4.00O12H2.53. The apparent excess of H is probably due to the fact that the fraction of H2O was assumed by difference to 100 wt.%, and slightly overestimated. On the basis of the previous experimental findings on Li,Be-bearing mica, X-ray (at 100 K) and neutron (at 20 K) structure refinements were performed in the space groupsCcandC2/c. The neutron structure refinement in the space groupCcoffers a view about the (Al,Be,Si)-tetrahedral ordering: the best fit of the refinement was reached with theT1 andT4 sites occupied by (Be + Al) andT2 andT3 fully occupied by Si. This leads to a final population ofT(Al1.88Be0.12Si2.00)∑4.00p.f.u., in reasonable agreement with the chemical analysis. The neutron refinement provides unambigous evidence of the occurrence of Li at theM1 site. The refined fraction of Li at theM1 site ranges between 0.27 and 0.29 a.p.f.u., in excellent agreement with the chemical analysis. The presence of Li, at least at a significant level, at theM2 (andM3) site can be ruled out, as a full site occupancy with the scattering length of Al was obtained. The location of the H sites and the complex hydrogen-bonding scheme are described. A comparison between the structure features of this Li,Be-mica and other brittle micas is carried out.
openBEB: open biological experiment browser for correlative measurements
Authors: Ramakrishnan Chandrasekhar , Bieri Andrej , Sauter Nora , Roizard Sophie , Ringler Philippe , Müller Shirley A , Goldie Kenneth N , Enimanev Kaloyan , Stahlberg Henning , Rinn Bernd , Braun Thomas 
Published: March 2014

Abstract

Background
New experimental methods must be developed to study interaction networks in systems biology. To reduce biological noise, individual subjects, such as single cells, should be analyzed using high throughput approaches. The measurement of several correlative physical properties would further improve data consistency. Accordingly, a considerable quantity of data must be acquired, correlated, catalogued and stored in a database for subsequent analysis.

Results
We have developed openBEB (open Biological Experiment Browser), a software framework for data acquisition, coordination, annotation and synchronization with database solutions such as openBIS. OpenBEB consists of two main parts: A core program and a plug-in manager. Whereas the data-type independent core of openBEB maintains a local container of raw-data and metadata and provides annotation and data management tools, all data-specific tasks are performed by plug-ins. The open architecture of openBEB enables the fast integration of plug-ins, e.g., for data acquisition or visualization. A macro-interpreter allows the automation and coordination of the different modules. An update and deployment mechanism keeps the core program, the plug-ins and the metadata definition files in sync with a central repository.

Conclusions
The versatility, the simple deployment and update mechanism, and the scalability in terms of module integration offered by openBEB make this software interesting for a large scientific community. OpenBEB targets three types of researcher, ideally working closely together: (i) Engineers and scientists developing new methods and instruments, e.g., for systems-biology, (ii) scientists performing biological experiments, (iii) theoreticians and mathematicians analyzing data. The design of openBEB enables the rapid development of plug-ins, which will inherently benefit from the “house keeping” abilities of the core program. We report the use of openBEB to combine live cell microscopy, microfluidic control and visual proteomics. In this example, measurements from diverse complementary techniques are combined and correlated.
Oral cancer cells may rewire alternative metabolic pathways to survive from siRNA silencing of metabolic enzymes
Authors: Zhang Min , Chai Yang D , Brumbaugh Jeffrey , Liu Xiaojun , Rabii Ramin , Feng Sizhe , Misuno Kaori , Messadi Diana , Hu Shen 
Published: March 2014

Abstract

Background
Cancer cells may undergo metabolic adaptations that support their growth as well as drug resistance properties. The purpose of this study is to test if oral cancer cells can overcome the metabolic defects introduced by using small interfering RNA (siRNA) to knock down their expression of important metabolic enzymes.

Methods
UM1 and UM2 oral cancer cells were transfected with siRNA to transketolase (TKT) or siRNA to adenylate kinase (AK2), and Western blotting was used to confirm the knockdown. Cellular uptake of glucose and glutamine and production of lactate were compared between the cancer cells with either TKT or AK2 knockdown and those transfected with control siRNA. Statistical analysis was performed with student T-test.

Results
Despite the defect in the pentose phosphate pathway caused by siRNA knockdown of TKT, the survived UM1 or UM2 cells utilized more glucose and glutamine and secreted a significantly higher amount of lactate than the cells transferred with control siRNA. We also demonstrated that siRNA knockdown of AK2 constrained the proliferation of UM1 and UM2 cells but similarly led to an increased uptake of glucose/glutamine and production of lactate by the UM1 or UM2 cells survived from siRNA silencing of AK2.

Conclusions
Our results indicate that the metabolic defects introduced by siRNA silencing of metabolic enzymes TKT or AK2 may be compensated by alternative feedback metabolic mechanisms, suggesting that cancer cells may overcome single defective pathways through secondary metabolic network adaptations. The highly robust nature of oral cancer cell metabolism implies that a systematic medical approach targeting multiple metabolic pathways may be needed to accomplish the continued improvement of cancer treatment.
Time-frequency optimization for discrimination between imagination of right and left hand movements based on two bipolar electroencephalography channels
Authors: Yang Yuan , Chevallier Sylvain , Wiart Joe , Bloch Isabelle 
Published: March 2014

AbstractTo enforce a widespread use of efficient and easy to use brain-computer interfaces (BCIs), the inter-subject robustness should be increased and the number of electrodes should be reduced. These two key issues are addressed in this contribution, proposing a novel method to identify subject-specific time-frequency characteristics with a minimal number of electrodes. In this method, two alternative criteria, time-frequency discrimination factor (TFDF) andFscore, are proposed to evaluate the discriminative power of time-frequency regions. Distinct from classical measures (e.g., Fisher criterion,r2coefficient), the TFDF is based on the neurophysiologic phenomena, on which the motor imagery BCI paradigm relies, rather than only from statistics.Fscore is based on the popularFisher’sdiscriminant and purely data driven; however, it differs from traditional measures since it provides a simple and effective measure for quantifying the discriminative power of a multi-dimensional feature vector. The proposed method is tested on BCI competition IV datasets IIa and IIb for discriminating right and left hand motor imagery. Compared to state-of-the-art methods, our method based on both criteria led to comparable or even better classification results, while using fewer electrodes (i.e., only two bipolar channels, C3 and C4). This work indicates that time-frequency optimization can not only improve the classification performance but also contribute to reducing the number of electrodes required in motor imagery BCIs.
Animal models of chronic tympanic membrane perforation: in response to plasminogen initiates and potentiates the healing of acute and chronic tympanic membrane perforations in mice
Authors: Wang Allen Y , Shen Yi , Wang Jeffrey T , Eikelboom Robert H , Dilley Rodney J 
Published: March 2014

AbstractTympanic membrane perforations (TMP) are relatively common but are typically not treated in their acute stage, as most will heal spontaneously in 7–10 days. Those cases which fail to heal within 3 months are called chronic TMP which attract surgical intervention (e.g. myringoplasty), typically with a temporalis fascia autograft. New materials for the repair of chronic TMP are being developed to address deficiencies in the performance of autografts by undergoing evaluation in animal models prior to clinical study. However, there is currently a lack of ideal chronic TMP animal models available, hindering the development of new treatments. Various techniques and animal species have been investigated for the creation of chronic TMP with varied success. In the present commentary, we bring to the attention of readers the recent report by Shen et al. in Journal of Translational Medicine. The study reported the creation of a chronic TMP animal model in plasminogen gene deficient mice. However, the short observation time (9, 19 days), lack of success rate and the scarcity of solid evidence (e.g. otoscopic & histologic images) to confirm the chronicity of TMP warrant a more thorough discussion.