bluuebunny/crossref_metadata_2025_split huggingface dataset:
Rheology and Structure of Model Smectite Clay: Insights From Molecular Dynamics
Authors: Lin Z.‐Y. , Hatano T. 
Published: August 2024

AbstractThe low frictional strength of smectite minerals, such as montmorillonite, is thought to play a critical role in controlling the rheology and the stability of clay‐rich faults. In this study, we perform molecular dynamics simulations on a model clay system. Clay platelets are simplified as oblate ellipsoids interacting via the Gay‐Berne potential. We study the rheology and structural development during shear in this model system, which is sheared at constant strain rates for 10 strains after compression and equilibrium. We find that the system exhibits velocity‐strengthening behavior over a range of normal stresses from 1.68 to 56.18 MPa and a range of strain rates from 6.93 × 105 to 6.93 × 108/s. The relationship between shear stress and strain rate follows the Herschel‐Bulkley model. Shear localization is observed at lower strain rates despite the velocity‐strengthening friction, while homogeneous shear is realized at higher strain rates. The structure change due to shear is analyzed from various aspects: the porosity, particle orientation, velocity profile, and the parallel radial distribution function. We find that particle rearrangement and compaction dominate at the early stage of shear when the shear stress increases. The shear band starts to form in the later stage as the shear stress decreases and relaxes to a steady‐state value. The structural development at low strain rates is similar to previous experimental observations. The stacking structure is reduced during shear and restores logarithmically with time in the rest period.
B-cell intrinsic RANK signaling cooperates with TCL1 to induce lineage-dependent B-cell transformation
Authors: Pfeuffer Lisa , Siegert Viola , Frede Julia , Rieger Leonie , Trozzo Riccardo , de Andrade Krätzig Niklas , Ring Sandra , Sarhadi Shamim , Beck Nicole , Niedermeier Stefan , Abril-Gil Mar , Elbahloul Mohamed , Remke Marianne , Steiger Katja , Eichner Ruth , Jellusova Julia , Rad Roland , Bassermann Florian , Winter Christof , Ruland Jürgen , Buchner Maike 
Published: August 2024

AbstractB-cell malignancies, such as chronic lymphocytic leukemia (CLL) and multiple myeloma (MM), remain incurable, with MM particularly prone to relapse. Our study introduces a novel mouse model with active RANK signaling and the TCL1 oncogene, displaying both CLL and MM phenotypes. In younger mice, TCL1 and RANK expression expands CLL-like B1-lymphocytes, while MM originates from B2-cells, becoming predominant in later stages and leading to severe disease progression and mortality. The induced MM mimics human disease, exhibiting features like clonal plasma cell expansion, paraproteinemia, anemia, and kidney and bone failure, as well as critical immunosurveillance strategies that promote a tumor-supportive microenvironment. This research elucidates the differential impacts of RANK activation in B1- and B2-cells and underscores the distinct roles of single versus combined oncogenes in B-cell malignancies. We also demonstrate that human MM cells express RANK and that inhibiting RANK signaling can reduce MM progression in a xenotransplantation model. Our study provides a rationale for further investigating the effects of RANK signaling in B-cell transformation and the shaping of a tumor-promoting microenvironment.
Osteoclasts control endochondral ossification via regulating acetyl-CoA availability
Authors: Deng Daizhao , Liu Xianming , Huang Wenlan , Yuan Sirui , Liu Genming , Ai Shanshan , Fu Yijie , Xu Haokun , Zhang Xinyi , Li Shihai , Xu Song , Bai Xiaochun , Zhang Yue 
Published: August 2024

AbstractOsteoclast is critical in skeletal development and fracture healing, yet the impact and underlying mechanisms of their metabolic state on these processes remain unclear. Here, by using osteoclast-specific small GTPase Rheb1-knockout mice, we reveal that mitochondrial respiration, rather than glycolysis, is essential for cathepsin K (CTSK) production in osteoclasts and is regulated by Rheb1 in a mechanistic target of rapamycin complex 1 (mTORC1)-independent manner. Mechanistically, we find that Rheb1 coordinates with mitochondrial acetyl-CoA generation to fuel CTSK, and acetyl-CoA availability in osteoclasts is the central to elevating CTSK. Importantly, our findings demonstrate that the regulation of CTSK by acetyl-CoA availability is critical and may confer a risk for abnormal endochondral ossification, which may be the main cause of poor fracture healing on alcohol consumption, targeting Rheb1 could successfully against the process. These findings uncover a pivotal role of mitochondria in osteoclasts and provide a potent therapeutic opportunity in bone disorders.
LncRNA HAGLROS promotes breast cancer evolution through miR-135b-3p/COL10A1 axis and exosome-mediated macrophage M2 polarization
Authors: Meng Ziqi , Zhang Rui , Wu Xuwei , Piao Zhengri , Zhang Meihua , Jin Tiefeng 
Published: August 2024

AbstractLong non-coding RNAs (lncRNAs) play an important role in breast cancer progression, but the function of lncRNAs in regulating tumor-associated macrophages (TAMs) remains unclear. As carriers of lncRNAs, exosomes play an important role as mediators in the communication between cancer cells and the tumor microenvironment. In this study, we found that lncRNA HAGLROS was highly expressed in breast cancer tissues and plasma exosomes, and its high expression was related to the poor prognosis of breast cancer patients. Functionally, breast cancer cell-derived exosomal lncRNA HAGLROS promotes breast cancer cell proliferation, migration, epithelial-mesenchymal transition (EMT) process and angiogenesis by inducing TAM/M2 polarization. Mechanistically, lncRNA HAGLROS competitively binds to miR-135-3p to prevent the degradation of its target gene COL10A1. Collectively, these results indicated that the lncRNA HAGLROS/miR-135b-3p/COL10A1 axis promoted breast cancer progression, and revealed the interactive communication mechanism between breast cancer cells and TAMs, suggesting that lncRNA HAGLROS may be a potential biomarker and therapeutic target for breast cancer.
Premature senescence is regulated by crosstalk among TFEB, the autophagy lysosomal pathway and ROS derived from damaged mitochondria in NaAsO2-exposed auditory cells
Authors: Suzuki Yuna , Hayashi Ken , Goto Fumiyuki , Nomura Yasuyuki , Fujimoto Chisato , Makishima Makoto 
Published: August 2024

AbstractAge-related hearing loss (ARHL) is one of the most prevalent types of sensory decline in a superaging society. Although various studies have focused on the effect of oxidative stress on the inner ear as an inducer of ARHL, there are no effective preventive approaches for ARHL. Recent studies have suggested that oxidative stress-induced DNA damage responses (oxidative DDRs) drive cochlear cell senescence and contribute to accelerated ARHL, and autophagy could function as a defense mechanism against cellular senescence in auditory cells. However, the underlying mechanism remains unclear. Sodium arsenite (NaAsO2) is a unique oxidative stress inducer associated with reactive oxygen species (ROS) that causes high-tone hearing loss similar to ARHL. Transcription factor EB (TFEB) functions as a master regulator of the autophagy‒lysosome pathway (ALP), which is a potential target during aging and the pathogenesis of various age-related diseases. Here, we focused on the function of TFEB and the impact of intracellular ROS as a potential target for ARHL treatment in a NaAsO2-induced auditory premature senescence model. Our results suggested that short exposure to NaAsO2 leads to DNA damage, lysosomal damage and mitochondrial damage in auditory cells, triggering temporary signals for TFEB transport into the nucleus and, as a result, causing insufficient autophagic flux and declines in lysosomal function and biogenesis and mitochondrial quality. Then, intracellular ROS derived from damaged mitochondria play a role as a second messenger to induce premature senescence in auditory cells. These findings suggest that TFEB activation via transport into the nucleus contributes to anti-senescence activity in auditory cells and represents a new therapeutic target for ARHL. We have revealed the potential function of TFEB as a master regulator of the induction of oxidative stress-induced premature senescence and the senescence-associated secretion phenotype (SASP) in auditory cells, which regulates ALP and controls mitochondrial quality through ROS production.
Distinct roles of monkey OFC-subcortical pathways in adaptive behavior
Authors: Oyama Kei , Majima Kei , Nagai Yuji , Hori Yukiko , Hirabayashi Toshiyuki , Eldridge Mark A. G. , Mimura Koki , Miyakawa Naohisa , Fujimoto Atsushi , Hori Yuki , Iwaoki Haruhiko , Inoue Ken-ichi , Saunders Richard C. , Takada Masahiko , Yahata Noriaki , Higuchi Makoto , Richmond Barry J. , Minamimoto Takafumi 
Published: August 2024

AbstractPrimates must adapt to changing environments by optimizing their behavior to make beneficial choices. At the core of adaptive behavior is the orbitofrontal cortex (OFC) of the brain, which updates choice value through direct experience or knowledge-based inference. Here, we identify distinct neural circuitry underlying these two separate abilities. We designed two behavioral tasks in which two male macaque monkeys updated the values of certain items, either by directly experiencing changes in stimulus-reward associations, or by inferring the value of unexperienced items based on the task’s rules. Chemogenetic silencing of bilateral OFC combined with mathematical model-fitting analysis revealed that monkey OFC is involved in updating item value based on both experience and inference. In vivo imaging of chemogenetic receptors by positron emission tomography allowed us to map projections from the OFC to the rostromedial caudate nucleus (rmCD) and the medial part of the mediodorsal thalamus (MDm). Chemogenetic silencing of the OFC-rmCD pathway impaired experience-based value updating, while silencing the OFC-MDm pathway impaired inference-based value updating. Our results thus demonstrate dissociable contributions of distinct OFC projections to different behavioral strategies, and provide new insights into the neural basis of value-based adaptive decision-making in primates.
A consistent budgeting of terrestrial carbon fluxes
Authors: Dorgeist Lea , Schwingshackl Clemens , Bultan Selma , Pongratz Julia 
Published: August 2024

AbstractAccurate estimates of CO2 emissions from anthropogenic land-use change (ELUC) and of the natural terrestrial CO2 sink (SLAND) are crucial to precisely know how much CO2 can still be emitted to meet the goals of the Paris Agreement. In current carbon budgets, ELUC and SLAND stem from two model families that differ in how CO2 fluxes are attributed to environmental and land-use changes, making their estimates conceptually inconsistent. Here we provide consistent estimates of ELUC and SLAND by integrating environmental effects on land carbon into a spatially explicit bookkeeping model. We find that state-of-the-art process-based models overestimate SLAND by 23% (min: 8%, max: 33%) in 2012–2021, as they include hypothetical sinks that in reality are lost through historical ecosystem degradation. Additionally, ELUC increases by 14% (8%, 23%) in 2012–2021 when considering environmental effects. Altogether, we find a weaker net land sink, which makes reaching carbon neutrality even more ambitious. These results highlight that a consistent estimation of terrestrial carbon fluxes is essential to assess the progress of net-zero emission commitments and the remaining carbon budget.
A temperature sensor with a wide spectral range based on a dual-emissive TADF dendrimer system
Authors: Si Changfeng , Wang Tao , Xu Yan , Lin Dongqing , Sun Dianming , Zysman-Colman Eli 
Published: August 2024

AbstractDual emission from thermally activated delayed fluorescence (TADF) emitters is often difficult to observe, especially in solution, limited by Kasha’s rule. Two TADF dendrimers containing N-doped polycyclic aromatic hydrocarbons as acceptors are designed and synthesized. Compound 2GCzBPN, having a strongly twisted geometry, exhibits TADF, while 2GCzBPPZ, possessing a less twisted geometry, shows dual emission associated with the monomer and aggregate that is TADF. The demonstration reveals that 2GCzBPPZ can serve as a temperature sensor with excellent temperature sensitivity and remarkably wide emission color response in solution. By embedding 2GCzBPPZ in paraffin we demonstrate a spatial-temperature sensor that shows a noticeable emission shift from yellow to green and ultimately to blue as the temperature increases from 20 to 200 °C. We finally demonstrate the utility of these TADF dendrimers in solution-processed organic light-emitting diodes.
Wireless, battery-free, and real-time monitoring of water permeation across thin-film encapsulation
Authors: Mariello Massimo , Rosenthal James Daniel , Cecchetti Francesco , Gao Mingxiang , Skrivervik Anja K. , Leterrier Yves , Lacour Stéphanie P. 
Published: August 2024

AbstractLong-term bioelectronic implants require stable, hermetic encapsulation. Water and ion ingress are challenging to quantify, especially in miniaturized microsystems and over time. We propose a wireless and battery-free flexible platform leveraging backscatter communication and magnesium (Mg)-based microsensors. Water permeation through the encapsulation induces corrosion of the Mg resistive sensor thereby shifting the oscillation frequency of the sensing circuit. Experimental in vitro and in-tissue characterization provides information on the operation of the platform and demonstrates the robustness and accuracy of this promising method, revealing its significance for in-situ real-time monitoring of implanted bioelectronics.
Reconstruction of human dispersal during Aurignacian on pan-European scale
Authors: Shao Yaping , Wegener Christian , Klein Konstantin , Schmidt Isabell , Weniger Gerd-Christian 
Published: August 2024

AbstractThe Aurignacian is the first techno-complex related with certainty to Anatomically Modern Humans in Europe. Studies show that they appeared around 43-42 kyr cal BP and dispersed rapidly in Europe during the Upper Palaeolithic. However, human dispersal is a highly convoluted process which is until today not well understood. Here, we provide a reconstruction of the human dispersal during the Aurignacian on the pan-European scale using a human dispersal model, the Our Way Model, which combines archaeological with paleoclimate data and uses the human existence potential as a unifying driver of human population dynamics. Based on the reconstruction, we identify the different stages of the human dispersal and analyse how human demographic processes are influenced by climate change and topography. A chronology of the Aurignacian human groups in Europe is provided, which is verified for locations where archaeological dating records are available. Insights into highly debated hypotheses, such as human dispersal routes, are provided.
Structural basis of frizzled 7 activation and allosteric regulation
Authors: Bous Julien , Kinsolving Julia , Grätz Lukas , Scharf Magdalena M. , Voss Jan Hendrik , Selcuk Berkay , Adebali Ogün , Schulte Gunnar 
Published: August 2024

AbstractFrizzleds (ten paralogs: FZD1-10) belong to the class F of G protein-coupled receptors (GPCRs), which remains poorly understood despite its crucial role in multiple key biological functions including embryonic development, stem cell regulation, and homeostasis in the adult. FZD7, one of the most studied members of the family, is more specifically involved in the migration of mesendoderm cells during the development and renewal of intestinal stem cells in adults. Moreover, FZD7 has been highlighted for its involvement in tumor development predominantly in the gastrointestinal tract. This study reports the structure of inactive FZD7, without any stabilizing mutations, determined by cryo-electron microscopy (cryo-EM) at 1.9 Å resolution. We characterize a fluctuating water pocket in the core of the receptor important for FZD7 dynamics. Molecular dynamics simulations are used to investigate the temporal distribution of those water molecules and their importance for potential conformational changes in FZD7. Moreover, we identify lipids interacting with the receptor core and a conserved cholesterol-binding site, which displays a key role in FZD7 association with a transducer protein, Disheveled (DVL), and initiation of downstream signaling and signalosome formation.
Administration of anti-HIV-1 broadly neutralizing monoclonal antibodies with increased affinity to Fcγ receptors during acute SHIVAD8-EO infection
Authors: Dias Joana , Fabozzi Giulia , Fourati Slim , Chen Xuejun , Liu Cuiping , Ambrozak David R. , Ransier Amy , Laboune Farida , Hu Jianfei , Shi Wei , March Kylie , Maximova Anna A. , Schmidt Stephen D. , Samsel Jakob , Talana Chloe A. , Ernste Keenan , Ko Sung Hee , Lucas Margaret E. , Radecki Pierce E. , Boswell Kristin L. , Nishimura Yoshiaki , Todd John-Paul , Martin Malcolm A. , Petrovas Constantinos , Boritz Eli A. , Doria-Rose Nicole A. , Douek Daniel C. , Sékaly Rafick-Pierre , Lifson Jeffrey D. , Asokan Mangaiarkarasi , Gama Lucio , Mascola John R. , Pegu Amarendra , Koup Richard A. 
Published: August 2024

AbstractAnti-HIV-1 broadly neutralizing antibodies (bNAbs) have the dual potential of mediating virus neutralization and antiviral effector functions through their Fab and Fc domains, respectively. So far, bNAbs with enhanced Fc effector functions in vitro have only been tested in NHPs during chronic simian-HIV (SHIV) infection. Here, we investigate the effects of administering in acute SHIVAD8-EO infection either wild-type (WT) bNAbs or bNAbs carrying the S239D/I332E/A330L (DEL) mutation, which increases binding to FcγRs. Emergence of virus in plasma and lymph nodes (LNs) was delayed by bNAb treatment and occurred earlier in monkeys given DEL bNAbs than in those given WT bNAbs, consistent with faster clearance of DEL bNAbs from plasma. DEL bNAb-treated monkeys had higher levels of circulating virus-specific IFNγ single-producing CD8+ CD69+ T cells than the other groups. In LNs, WT bNAbs were evenly distributed between follicular and extrafollicular areas, but DEL bNAbs predominated in the latter. At week 8 post-challenge, LN monocytes and NK cells from DEL bNAb-treated monkeys upregulated proinflammatory signaling pathways and LN T cells downregulated TNF signaling via NF-κB. Overall, bNAbs with increased affinity to FcγRs shape innate and adaptive cellular immunity, which may be important to consider in future strategies of passive bNAb therapy.
Scalable interpolation of satellite altimetry data with probabilistic machine learning
Authors: Gregory William , MacEachern Ronald , Takao So , Lawrence Isobel R. , Nab Carmen , Deisenroth Marc Peter , Tsamados Michel 
Published: August 2024

AbstractWe present GPSat; an open-source Python programming library for performing efficient interpolation of non-stationary satellite altimetry data, using scalable Gaussian process techniques. We use GPSat to generate complete maps of daily 50 km-gridded Arctic sea ice radar freeboard, and find that, relative to a previous interpolation scheme, GPSat offers a 504 × computational speedup, with less than 4 mm difference on the derived freeboards on average. We then demonstrate the scalability of GPSat through freeboard interpolation at 5 km resolution, and Sea-Level Anomalies (SLA) at the resolution of the altimeter footprint. Interpolated 5 km radar freeboards show strong agreement with airborne data (linear correlation of 0.66). Footprint-level SLA interpolation also shows improvements in predictive skill over linear regression. In this work, we suggest that GPSat could overcome the computational bottlenecks faced in many altimetry-based interpolation routines, and hence advance critical understanding of ocean and sea ice variability over short spatio-temporal scales.
Risky sexual behaviors and associated factors among adolescent in Gedeo Zone, South Ethiopia: a community based cross-sectional study
Authors: Wondimagegne Yohannes Addisu , Anbese Adane Tesfaye 
Published: August 2024

AbstractAdolescents represent 16% of the global population and they are identified as a critical demographic group for promoting sexual health. Adolescents are susceptible to engaging in risky sexual behaviors (RSB) such as early sexual initiation, having multiple sexual partners, substance use during sexual encounters and practicing unsafe sex. Adolescents represent 16% of the global population and they are identified as a critical demographic group for promoting sexual health. Adolescents are susceptible to engaging in risky sexual behaviors (RSB) such as early sexual initiation, having multiple sexual partners, substance use during sexual encounters and practicing unsafe sex. To assess risky Sexual behaviors and associated factors among adolescent in Gedeo Zone, Southern Ethiopia: A community based cross-sectional study. A community based cross-sectional study was conducted in Gedeo Zone among adolescents. A total of 2780 (99.3%) adolescents were participated in the study and gave the response rate of 99.3%. A pre-tested structured questionnaire was used to gather the data and analyzed by using SPSS version 23. During analysis initially bivariable logistic regression model was used then, those variables with a level of significant at a P-value ≤ 0.25 were considered as candidate for multivariable logistic regression model. A level of significant at a P-value ≤ 0.05 was considered as statistically significant in this study. Out of 428 sexually active adolescent 334 (78%) exposed to risky sexual practice. More than half 54.3% of adolescent was protestant in religion followed by Orthodox 34.2% and Muslim 11.5%. In terms of ethnicity, Gedeo 67.4% was the dominant ethnic group in the study area. Mean age at sexual initiation was 15 ± 1.8.Residence AOR 1.14 (1.36–5.25), Sex AOR 2.77 (1.31–5.86), Age AOR 2.01 (1.41–6.39), School attending AOR 1.93 (1.27–5.75), Watching Pornographies AOR 2.51 (1.36–4.62) and Parental monitoring AOR 2.10 (1.07–4.10) were independent predictor of risky sexual practice in this study. The prevalence of risky sexual behavior was found to be alarming among adolescents aged 14–19 years, mostly rural and female adolescents and those adolescent start sexual practice earlier exposed to risky sexual practice than their counter parts. Sexual urge, watching pornography and not attending school were the major factor for risky sexual behaviors of adolescent. Parental over all control can protect risky sexual behaviors among adolescent.