bluuebunny/crossref_metadata_2025_split huggingface dataset:
Tendon development and diseases
Authors: Gaut Ludovic , Duprez Delphine 
Published: August 2015

Tendon is a uniaxial connective tissue component of the musculoskeletal system. Tendon is involved in force transmission between muscle and bone. Tendon injury is very common and debilitating but tendon repair remains a clinical challenge for orthopedic medicine. In vertebrates, tendon is mainly composed of type I collagen fibrils, displaying a parallel organization along the tendon axis. The tendon‐specific spatial organization of type I collagen provides the mechanical properties for tendon function. In contrast to other components of the musculoskeletal system, tendon biology is poorly understood. An important goal in tendon biology is to understand the mechanisms involved in the production and assembly of type I collagen fibrils during development, postnatal formation, and healing processes in order to design new therapies for tendon repair. In this review we highlight the current understanding of the molecular and mechanical signals known to be involved in tenogenesis during development, and how development provides insights into tendon healing processes. WIREs Dev Biol 2016, 5:5–23. doi: 10.1002/wdev.201This article is categorized under:

Vertebrate Organogenesis > Musculoskeletal and Vascular
In silico model-driven cofactor engineering strategies for improving the overall NADP(H) turnover in microbial cell factories
Authors: Lakshmanan Meiyappan , Yu Kai , Koduru Lokanand , Lee Dong-Yup 
Published: August 2015

Abstract
Optimizing the overall NADPH turnover is one of the key challenges in various value-added biochemical syntheses. In this work, we first analyzed the NADPH regeneration potentials of common cell factories, including Escherichia coli, Saccharomyces cerevisiae, Bacillus subtilis, and Pichia pastoris across multiple environmental conditions and determined E. coli and glycerol as the best microbial chassis and most suitable carbon source, respectively. In addition, we identified optimal cofactor specificity engineering (CSE) enzyme targets, whose cofactors when switched from NAD(H) to NADP(H) improve the overall NADP(H) turnover. Among several enzyme targets, glyceraldehyde-3-phosphate dehydrogenase was recognized as a global candidate since its CSE improved the NADP(H) regeneration under most of the conditions examined. Finally, by analyzing the protein structures of all CSE enzyme targets via homology modeling, we established that the replacement of conserved glutamate or aspartate with serine in the loop region could change the cofactor dependence from NAD(H) to NADP(H).
Circadian and Sex Differences After Acute High-Altitude Exposure: Are Early Acclimation Responses Improved by Blue Light?
Authors: Silva-Urra Juan A. , Núñez-Espinosa Cristian A. , Niño-Mendez Oscar A. , Gaitán-Peñas Héctor , Altavilla Cesare , Toro-Salinas Andrés , Torrella Joan R. , Pagès Teresa , Javierre Casimiro F. , Behn Claus , Viscor Ginés 
Published: August 2015

Objective The possible effects of blue light during acute hypoxia and the circadian rhythm on several physiological and cognitive parameters were studied. Methods Fifty-seven volunteers were randomly assigned to 2 groups: nocturnal (2200–0230 hours) or diurnal (0900–1330 hours) and exposed to acute hypoxia (4000 m simulated altitude) in a hypobaric chamber. The participants were illuminated by blue LEDs or common artificial light on 2 different days. During each session, arterial oxygen saturation (Spo2), blood pressure, heart rate variability, and cognitive parameters were measured at sea level, after reaching the simulated altitude of 4000 m, and after 3 hours at this altitude. Results The circadian rhythm caused significant differences in blood pressure and heart rate variability. A 4% to 9% decrease in waking nocturnal Spo2 under acute hypoxia was observed. Acute hypoxia also induced a significant reduction (4%–8%) in systolic pressure, slightly more marked (up to 13%) under blue lighting. Women had significantly increased systolic (4%) and diastolic (12%) pressures under acute hypoxia at night compared with daytime pressure; this was not observed in men. Some tendencies toward better cognitive performance (d2 attention test) were seen under blue illumination, although when considered together with physiological parameters and reaction time, there was no conclusive favorable effect of blue light on cognitive fatigue suppression after 3 hours of acute hypobaric hypoxia. Conclusions It remains to be seen whether longer exposure to blue light under hypobaric hypoxic conditions would induce favorable effects against fatigue.
Detrital zircon U–Pb ages of the Palaeozoic Natal Group and Msikaba Formation, Kwazulu-Natal, South Africa: provenance areas in context of Gondwana
Authors: VORSTER CLARISA , KRAMERS JAN , BEUKES NIC , VAN NIEKERK HERMAN 
Published: August 2015

AbstractThe Natal Group and Msikaba Formation remain relatively poorly understood with regards to their provenance and relative age of deposition; a much-needed geochronological study of the detrital zircons from these two units was therefore undertaken. Five samples of the Durban and Mariannhill Formations (Natal Group) and the Msikaba Formation (Cape Supergroup) were obtained. A total of 882 concordant U–Pb ages of detrital zircon populations from these units were determined by means of laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). Major Neoproterozoic and secondary Mesoproterozoic detrital zircon age populations are present in the detrital zircon content of all the samples. Smaller contributions from Archean-, Palaeoproterozoic-, Cambrian- and Ordovician-aged grains are also present. Due to the presence of a prominent major population of 800–1000 Ma zircons in all the samples, late Stenian – Tonian ancient volcanic arc complexes overprinted by Pan-African metamorphism of Mozambique, Malawi and Zambia, along with areas of similar age within Antarctica, India and Sri Lanka, are suggested as major sources of detritus. The Namaqua–Natal Metamorphic Complex is suggested as a possible source of minor late Mesoproterozoic-aged detritus. Minor populations of Archean and Palaeoproterozoic zircons were likely sourced from the Kaapvaal and Grunehogna Cratons. Post-orogenic Cambrian – Lower Ordovician granitoids of the Mozambique Belt (Mozambique) and the Maud Belt (Antarctica) made lesser contributions. In view of the apparent broad similarity of source areas for the Natal Group and Msikaba Formation, their sedimentation occurred in parts of the same large and evolving basin rather than localized in small continental basins, and the current exposures merely represent small erosional relicts.
Functional neuroimaging of human vocalizations and affective speech
Authors: Frühholz Sascha , Sander David , Grandjean Didier 
Published: August 2015

AbstractNeuroimaging studies have verified the important integrative role of the basal ganglia during affective vocalizations. They, however, also point to additional regions supporting vocal monitoring, auditory–motor feedback processing, and online adjustments of vocal motor responses. For the case of affective vocalizations, we suggest partly extending the model to fully consider the link between primate-general and human-specific neural components.
Recognising, assessing and managing offending behaviour in persons with intellectual disability
Authors: Leonard Peter , Shanahan Sean , Hillery John 
Published: August 2015

AbstractThe association between intellectual disability and offending is complex. Recent evidence would suggest that the received wisdom of intellectually disabled persons being more prone to offending is either incorrect or only tells part of the story. Those within the ‘borderline’ intellectual disability range may be more prone to committing sexual and criminal damage offences but those with an IQ less than 50 rarely offend.The offender with intellectual disability shares characteristics with his counterpart from the general population. As with the general population as a whole, offending in this group is often unreported and its recognition is complicated by issues of competence. The lack of validated forensic assessment schedules for this population poses a further challenge. Some general approaches to assessment in this population are discussed. This case report illustrates the difficulties of assessing and managing offending behaviour in an individual with moderate intellectual disability. The challenge of treating offenders with an intellectual disability is immense and requires specialist expertise. Managing such cases in a generic setting is inappropriate and the need for a forensic learning disability service in Ireland is highlighted.
Psychobiology of Mindfulness
Authors: Stein Dan J. , Ives-Deliperi Victoria , Thomas Kevin G.F. 
Published: August 2015

AbstractThere is controversy about whether mindfulness-based approaches to psychotherapy represent a new wave of cognitive-behavioral therapy or a core process in all psychotherapies. One way of conceptualizing mindfulness is in terms of emotion regulation; mindfulness is a strategy aimed at opposing suppression and avoidance. Dispositional mindfulness has been associated with greater activation in prefrontal cortex and greater deactivation of amygdala during affect labeling. A number of rigorous studies of mindfulness-based cognitive therapy for depression have been positive. However, much remains to be discovered about the underlying mechanisms of and clinical indications for mindfulness-based approaches.
Functional Correlates of Midline Brain Volume Loss in Chronic Traumatic Brain Injury
Authors: Guild Emma B. , Levine Brian 
Published: August 2015

AbstractTraumatic brain injury (TBI) is associated with long-term changes in daily life functioning, yet the neuroanatomical correlates of these changes are poorly understood. This study related outcome assessed across several domains to brain structure derived from quantitative magnetic resonance imaging (MRI). Sixty individuals spanning a wide range of TBI severity participated 1-year post-injury as part of the Toronto TBI study. Volumetric data over 38 brain regions were derived from high resolution T1-weighted MRI scans. Functioning was assessed with a battery of self- and significant-other rated measures. Multivariate analysis (partial least squares) was used to identify shared variance between the neuroimaging and outcome measures. TBI was associated with item endorsement on outcome questionnaires without strong evidence for severity or focal lesion effects. Prefrontal midline, cingulate, medial temporal, right inferior parietal and basal ganglia/thalamic volumes were associated with measures of initiative, energization, and physical complaints. In the chronic stage of TBI, self-initiation, energization, and physical complaints related to a specific pattern of volume loss in midline and lateral regions known to be involved in motivation, apathy, and attention. These results suggest that crucial functional changes in chronic TBI may be associated with volume loss in established midline-frontal and attentional circuits. (JINS, 2015,21, 650–655)
A phase 2 randomized dose-ranging study of the JAK2-selective inhibitor fedratinib (SAR302503) in patients with myelofibrosis
Authors: Pardanani A , Tefferi A , Jamieson C , Gabrail N Y , Lebedinsky C , Gao G , Liu F , Xu C , Cao H , Talpaz M 
Published: August 2015

AbstractIn this phase 2 open-label randomized study, 31 patients with intermediate-2 or high-risk myelofibrosis received fedratinib 300, 400 or 500 mg once daily in consecutive 4-week cycles. Mean spleen volume reductions at 12 weeks (primary end point) were 30.3% (300 mg), 33.1% (400 mg) and 43.3% (500 mg). Spleen response rates (patients achieving ⩾35% spleen reduction) at 12/24 weeks were 30%/30% (300 mg), 50%/60% (400 mg) and 64%/55% (500 mg), respectively. By 4 weeks, improvements in myelofibrosis (MF)-associated symptoms were observed. At 48 weeks, 68% of patients remained on fedratinib and 16% had discontinued because of adverse events (AEs). Common grade 3/4 AEs were anemia (58%), fatigue (13%), diarrhea (13%), vomiting (10%) and nausea (6%). Serious AEs included one case of reversible hepatic failure and one case of Wernicke’s encephalopathy (after analysis cutoff). Fedratinib treatment led to reduced STAT3 phosphorylation but no meaningful change in JAK2V617F allele burden. Significant modulation (P<0.05, adjusted for multiple comparisons) of 28 cytokines was observed, many of which correlated with spleen reduction. These data confirm the clinical activity of fedratinib in MF. After the analysis cutoff date, additional reports of Wernicke's encephalopathy in other fedratinib trials led to discontinuation of the sponsored clinical development program.
Global diversity and biogeography of deep-sea pelagic prokaryotes
Authors: Salazar Guillem , Cornejo-Castillo Francisco M , Benítez-Barrios Verónica , Fraile-Nuez Eugenio , Álvarez-Salgado X Antón , Duarte Carlos M , Gasol Josep M , Acinas Silvia G 
Published: August 2015

Abstract
The deep-sea is the largest biome of the biosphere, and contains more than half of the whole ocean’s microbes. Uncovering their general patterns of diversity and community structure at a global scale remains a great challenge, as only fragmentary information of deep-sea microbial diversity exists based on regional-scale studies. Here we report the first globally comprehensive survey of the prokaryotic communities inhabiting the bathypelagic ocean using high-throughput sequencing of the 16S rRNA gene. This work identifies the dominant prokaryotes in the pelagic deep ocean and reveals that 50% of the operational taxonomic units (OTUs) belong to previously unknown prokaryotic taxa, most of which are rare and appear in just a few samples. We show that whereas the local richness of communities is comparable to that observed in previous regional studies, the global pool of prokaryotic taxa detected is modest (~3600 OTUs), as a high proportion of OTUs are shared among samples. The water masses appear to act as clear drivers of the geographical distribution of both particle-attached and free-living prokaryotes. In addition, we show that the deep-oceanic basins in which the bathypelagic realm is divided contain different particle-attached (but not free-living) microbial communities. The combination of the aging of the water masses and a lack of complete dispersal are identified as the main drivers for this biogeographical pattern. All together, we identify the potential of the deep ocean as a reservoir of still unknown biological diversity with a higher degree of spatial complexity than hitherto considered.
Microfluidic Chip-LC/MS-based Glycomic Analysis Revealed Distinct N-glycan Profile of Rat Serum
Authors: Gao Wei-Na , Yau Lee-Fong , Liu Liang , Zeng Xing , Chen Da-Can , Jiang Min , Liu Ju , Wang Jing-Rong , Jiang Zhi-Hong 
Published: August 2015

AbstractThe rat is an important alternative for studying human pathology owing to certain similarities to humans. Glycomic studies on rat serum have revealed that variations in the N-glycans of glycoproteins correlated with disease progression, which is consistent with the findings in human serum. Therefore, we comprehensively characterized the rat serum N-glycome using microfluidic chip-LC-ESI-QTOF MS and MS/MS techniques. In total, 282 N-glycans, including isomers, were identified. This study is the first to present comprehensive profiling of N-glycans containing O-acetylated sialic acid, among which 27 N-glycans are novel. In addition, the co-existence of N-acetylneuraminic acid (NeuAc) and N-glycolylneuraminic acid (NeuGc) in a single N-glycan (‘mixed’ N-glycan) was detected and represents a new type of N-glycan in rat serum. The existence of O-acetylated sialic acid is the characteristic feature of rat serum that distinguishes it from mouse and human sera. Comparisons between the rat, mouse and human serum glycomes revealed that the rat glycome is more similar to that of human sera than to that of mouse sera. Our findings highlight the similarities between the glycomic profile of rat and human sera and provided important selection criteria for choosing an appropriate animal model for pathological and pharmacological studies.
Chronic Noise Exposure Acts Cumulatively to Exacerbate Alzheimer’s Disease-Like Amyloid-β Pathology and Neuroinflammation in the Rat Hippocampus
Authors: Cui Bo , Li Kang , Gai Zhihui , She Xiaojun , Zhang Na , Xu Chuanxiang , Chen Xuewei , An Gaihong , Ma Qiang , Wang Rui 
Published: August 2015

AbstractA putative etiological association exists between noise exposure and Alzheimer’s disease (AD). Amyloid-β (Aβ) pathology is thought to be one of the primary initiating factors in AD. It has been further suggested that subsequent dysregulation of Aβ may play a mechanistic role in the AD-like pathophysiology associated with noise exposure. Here, we used ELISA, immunoblotting, cytokine arrays and RT-PCR, to examine both hippocampal Aβ pathology and neuroinflammation in rats at different time points after noise exposure. We found that chronic noise exposure significantly accelerated the progressive overproduction of Aβ, which persisted for 7 to 14 days after the cessation of exposure. This effect was accompanied by up-regulated expression of amyloid precursor protein (APP) and its cleavage enzymes, β- and γ-secretases. Cytokine analysis revealed that chronic noise exposure increased levels of tumor necrosis factor-α and the receptor for advanced glycation end products, while decreasing the expression of activin A and platelet-derived growth factor- AA. Furthermore, we found persistent elevations of glial fibrillary acidic protein and ionized calcium-binding adapter molecule 1 expression that closely corresponded to the noise-induced increases in Aβ and neuroinflammation. These studies suggest that lifelong environmental noise exposure may have cumulative effects on the onset and development of AD.
Plasma Concentrations of Radiocalcium after Oral Administration, and Their Relationship to Absorption
Authors: Tothill P. , Dellipiani A. W. , Calvert J. 
Published: August 2015

1. Different radioisotopes of calcium were administered orally and intravenously to a series of patients, some normal and others with diseases that might affect calcium absorption or metabolism. Concentrations of the two isotopes in plasma were determined at intervals. A mathematical procedure was developed for deriving from these measurements the total absorption of the oral dose and also the absorption/time relationship.
2. The correlation between absorption and plasma concentration of the oral dose at various times after administration was studied and found to be very good, the 2 hr plasma level giving the best correlation, particularly when account was taken of the patient's weight.
3. The effect of variations in the disappearance curve of the injected isotope upon the shape of the plasma appearance curve of the oral isotope was examined. It is concluded that for the majority of cases, when absorption is not greatly delayed, and the exchange processes determining the shape of the disappearance curve are not markedly abnormal, 2 hr plasma concentration gives a good indication of absorption. When abnormalities in these processes are present, only the double isotope method gives accurate results.
4. The results were applied to examine the validity of other published methods of analysis. It was found that plasma concentrations of orally administered radiocalcium alone can give useful information about absorption, but not about plasma clearance.
Abnormalities in the Sodium Pump of Erythrocytes from Patients with Hyperthyroidism
Authors: Smith E. K. M. , Samuel Pamela D. 
Published: August 2015

1. Intracellular cation composition has been measured in the red cells from twenty patients with hyperthyroidism. The mean concentration of sodium was 11·18 m-mole/l red cells; in sixty normal control subjects the mean red cell sodium level was 7·04 m-mole/l. The difference between these two groups was highly significant. There was no measurable difference between the potassium concentration and water content of red cells from thyrotoxic and control groups.
2. Measurements of active sodium efflux were carried out in red cells from ten hyperthyroid subjects and their matched controls. The rate constant for active sodium efflux was significantly lower in the patients than the control group.
3. The total amount of sodium actively pumped from red cells in 1 hr was significantly higher in the patients than the controls.
4. The total amount of sodium moving out of the red cells, both actively and by exchange diffusion, matched the total influx of sodium. This was true for control subjects and those with hyperthyroidism and this would support the view that the intracellular sodium concentration is constant and represents the result of a balance between influx and efflux. In hyperthyroidism this balance persists, but with an abnormally high intracellular sodium concentration.
5. There was a linear relationship between the cell sodium content and the active transport of sodium from the cell in control and hyperthyroid subjects.
6. Triiodothyronine did not produce any change in sodium transport by normal red cells in vitro.
7. It is concluded that there is a depression of the activity of the sodium pump in the red cells of hyperthyroid subjects. This allows the resting intracellular sodium concentration to rise until a new steady state is reached. Evidence is given that these changes are reversed when hyperthyroidism is corrected.
Spleen Blood Flow and Splanchnic Haemodynamics in Blood Dyscrasia and other Splenomegalies
Authors: Blendis L. M. , Banks D. C. , Ramboer C. , Williams R. 
Published: August 2015

1. Splenic blood flow and splanchnic haemodynamics have been studied in twenty patients with splenomegaly due to blood dyscrasia or diseases involving the reticuloendothelial system. Thirteen of these patients had portal hypertension, three had abdominal collaterals on arteriovenography and one oesophageal varices.
2. Total spleen blood flow was increased in all with values up to 1550 ml/min, and associated with this liver blood flows increased up to 2·61 1 min−1 m−2. In four patients the cardiac output was raised.
3. In five patients a raised wedged hepatic vein pressure was found which was solely related to the increase in liver blood flow, but in two others, in whom hepatic histology was abnormal, there was also an increase in postsinusoidal resistance. Nine patients had a raised hepatic pre-sinusoidal resistance. This was related to a greatly increased liver blood flow with portal tract fibrosis and cellular infiltration as possible additional factors.
4. The haemodynamic findings in these patients were similar to those found previously in patients with tropical splenomegaly. In both groups spleen blood flow in ml 100 g−1 min−1 was inversely proportional to spleen size. There were similar increases in total spleen and liver blood flows and in the percentage of patients with an increased pre-sinusoidal resistance. In contrast, in cirrhosis there was no inverse relationship between flow in 1 100 g−1 min−1, and of spleen size, and for the degree of splenomegaly total spleen blood flow was relatively greater.