bluuebunny/crossref_metadata_2025_split huggingface dataset:
Meridional Energy Transport in the Coupled Atmosphere–Ocean System: Compensation and Partitioning
Authors: Farneti Riccardo , Vallis Geoffrey K. 
Published: March 2013

Abstract
The variability and compensation of the meridional energy transport in the atmosphere and ocean are examined with the state-of-the-art GFDL Climate Model, version 2.1 (CM2.1), and the GFDL Intermediate Complexity Coupled Model (ICCM). On decadal time scales, a high degree of compensation between the energy transport in the atmosphere (AHT) and ocean (OHT) is found in the North Atlantic. The variability of the total or planetary heat transport (PHT) is much smaller than the variability in either AHT or OHT alone, a feature referred to as “Bjerknes compensation.” Natural decadal variability stems from the Atlantic meridional overturning circulation (AMOC), which leads OHT variability. The PHT is positively correlated with the OHT, implying that the atmosphere is compensating, but imperfectly, for variations in ocean transport. Because of the fundamental role of the AMOC in generating the decadal OHT anomalies, Bjerknes compensation is expected to be active only in coupled models with a low-frequency AMOC spectral peak. The AHT and the transport in the oceanic gyres are positively correlated because the gyre transport responds to the atmospheric winds, thereby militating against long-term variability involving the wind-driven flow. Moisture and sensible heat transports in the atmosphere are also positively correlated at decadal time scales. The authors further explore the mechanisms and degree of compensation with a simple, diffusive, two-layer energy balance model. Taken together, these results suggest that compensation can be interpreted as arising from the highly efficient nature of the meridional energy transport in the atmosphere responding to ocean variability rather than any a priori need for the top-of-atmosphere radiation budget to be fixed.
Historical Evaluation and Future Prediction of Eastern North American and Western Atlantic Extratropical Cyclones in the CMIP5 Models during the Cool Season
Authors: Colle Brian A. , Zhang Zhenhai , Lombardo Kelly A. , Chang Edmund , Liu Ping , Zhang Minghua 
Published: March 2013

Abstract
Extratropical cyclone track density, genesis frequency, deepening rate, and maximum intensity distributions over eastern North America and the western North Atlantic were analyzed for 15 models from phase 5 of the Coupled Model Intercomparison Project (CMIP5) for the historical period (1979–2004) and three future periods (2009–38, 2039–68, and 2069–98). The cyclones were identified using an automated tracking algorithm applied to sea level pressure every 6 h. The CMIP5 results for the historical period were evaluated using the Climate Forecast System Reanalysis (CFSR). The CMIP5 models were ranked given their track density, intensity, and overall performance for the historical period. It was found that six of the top seven CMIP5 models with the highest spatial resolution were ranked the best overall. These models had less underprediction of cyclone track density, more realistic distribution of intense cyclones along the U.S. East Coast, and more realistic cyclogenesis and deepening rates. The best seven models were used to determine projected future changes in cyclones, which included a 10%–30% decrease in cyclone track density and weakening of cyclones over the western Atlantic storm track, while in contrast there is a 10%–20% increase in cyclone track density over the eastern United States, including 10%–40% more intense (&lt;980 hPa) cyclones and 20%–40% more rapid deepening rates just inland of the U.S. East Coast. Some of the reasons for these CMIP5 model differences were explored for the selected models based on model generated Eady growth rate, upper-level jet, surface baroclinicity, and precipitation.
Effect of Anthropogenic Land-Use and Land-Cover Changes on Climate and Land Carbon Storage in CMIP5 Projections for the Twenty-First Century
Authors: Brovkin V. , Boysen L. , Arora V. K. , Boisier J. P. , Cadule P. , Chini L. , Claussen M. , Friedlingstein P. , Gayler V. , van den Hurk B. J. J. M. , Hurtt G. C. , Jones C. D. , Kato E. , de Noblet-Ducoudré N. , Pacifico F. , Pongratz J. , Weiss M. 
Published: March 2013

Abstract
The effects of land-use changes on climate are assessed using specified-concentration simulations complementary to the representative concentration pathway 2.6 (RCP2.6) and RCP8.5 scenarios performed for phase 5 of the Coupled Model Intercomparison Project (CMIP5). This analysis focuses on differences in climate and land–atmosphere fluxes between the ensemble averages of simulations with and without land-use changes by the end of the twenty-first century. Even though common land-use scenarios are used, the areas of crops and pastures are specific for each Earth system model (ESM). This is due to different interpretations of land-use classes. The analysis reveals that fossil fuel forcing dominates land-use forcing. In addition, the effects of land-use changes are globally not significant, whereas they are significant for regions with land-use changes exceeding 10%. For these regions, three out of six participating models—the Second Generation Canadian Earth System Model (CanESM2); Hadley Centre Global Environmental Model, version 2 (Earth System) (HadGEM2-ES); and Model for Interdisciplinary Research on Climate, Earth System Model (MIROC-ESM)—reveal statistically significant changes in mean annual surface air temperature. In addition, changes in land surface albedo, available energy, and latent heat fluxes are small but significant for most ESMs in regions affected by land-use changes. These climatic effects are relatively small, as land-use changes in the RCP2.6 and RCP8.5 scenarios are small in magnitude and mainly limited to tropical and subtropical regions. The relative importance of the climatic effects of land-use changes is higher for the RCP2.6 scenario, which considers an expansion of biofuel croplands as a climate mitigation option. The underlying similarity among all models is the loss in global land carbon storage due to land-use changes.
Separating Forced from Chaotic Climate Variability over the Past Millennium
Authors: Schurer Andrew P. , Hegerl Gabriele C. , Mann Michael E. , Tett Simon F. B. , Phipps Steven J. 
Published: March 2013

Abstract
Reconstructions of past climate show notable temperature variability over the past millennium, with relatively warm conditions during the Medieval Climate Anomaly (MCA) and a relatively cold Little Ice Age (LIA). Multimodel simulations of the past millennium are used together with a wide range of reconstructions of Northern Hemispheric mean annual temperature to separate climate variability from 850 to 1950 CE into components attributable to external forcing and internal climate variability. External forcing is found to contribute significantly to long-term temperature variations irrespective of the proxy reconstruction, particularly from 1400 onward. Over the MCA alone, however, the effect of forcing is only detectable in about half of the reconstructions considered, and the response to forcing in the models cannot explain the warm conditions around 1000 CE seen in some reconstructions. The residual from the detection analysis is used to estimate internal variability independent from climate modeling, and it is found that the recent observed 50- and 100-yr hemispheric temperature trends are substantially larger than any of the internally generated trends even using the large residuals over the MCA. Variations in solar output and explosive volcanism are found to be the main drivers of climate change from 1400 to 1900, but for the first time a significant contribution from greenhouse gas variations to the cold conditions during 1600–1800 is also detected. The proxy reconstructions tend to show a smaller forced response than is simulated by the models. This discrepancy is shown, at least partly, to be likely associated with the difference in the response to large volcanic eruptions between reconstructions and model simulations.
Rivaroxaban modulates electrical and mechanical characteristics of left atrium
Authors: Chang Chien-Jung , Chen Yao-Chang , Lin Yung-Kuo , Huang Jen-Hung , Chen Shih-Ann , Chen Yi-Jen 
Published: March 2013

Abstract

Background
Rivaroxaban reduces stroke in patients with atrial fibrillation (AF). Left atrium (LA) plays a critical role in the pathophysiology of AF. However, the electromechanical effects of rivaroxaban on LA are not clear.

Results
Conventional microelectrodes and a whole-cell patch-clamp were used to record the action potentials (APs) and ionic currents in rabbit LA preparations and isolated single LA cardiomyocytes before and after the administration of rivaroxaban. Rivaroxaban (10, 30, 100, and 300 nM) concentration-dependently reduced LA (n = 7) AP durations at 90% repolarization (APD90) from 76 ± 2 to 79 ± 3, 67 ± 4 (P < 0.05, vs. control), 59 ± 5, (P < 0.01, vs. control), and 56 ± 4 ms (P < 0.005, vs. control), respectively. Rivaroxaban (10, 30, 100, and 300 nM) concentration-dependently increased the LA (n = 7) diastolic tension by 351 ± 69 (P < 0.05, vs. control), 563 ± 136 (P < 0.05, vs. control), 582 ± 119 (P < 0.05, vs. control), and 603 ± 108 mg (P < 0.005, vs. control), respectively, but did not change LA contractility. In the presence of L-NAME (100 μM) and indomethacin (10 μM), additional rivaroxaban (300 nM) treatment did not significantly further increase the LA (n = 7) diastolic tension, but shortened the APD90 from 73 ± 2 to 60 ± 6 ms (P < 0.05, vs. control). Rivaroxaban (100 nM) increased the L-type calcium current and ultra-rapid delayed rectifier potassium current, but did not change the transient outward potassium current in isolated LA cardiomyocytes.

Conclusions
Rivaroxaban modulates LA electrical and mechanical characteristics with direct ionic current effects.
Interleukin (IL)-13 promoter polymorphisms (-7402 T/G and -4729G/A) condition susceptibility to pediatric severe malarial anemia but not circulating IL-13 levels
Authors: Okeyo Winnie A , Munde Elly O , Okumu Wilson , Raballah Evans , Anyona Samuel B , Vulule John M , Ong’echa John M , Perkins Douglas J , Ouma Collins 
Published: March 2013

Abstract
In holoendemic Plasmodium falciparum transmission areas such as western Kenya, severe malarial anemia [SMA, hemoglobin (Hb) < 6.0 g/dL, with any density parasitemia] is the most common clinical manifestation of severe malaria resulting in high rates of pediatric morbidity and mortality in these regions. Previous studies associated interleukin (IL)-13 with pathogenesis of different infectious diseases, including P. falciparum malaria. However, the functional roles of polymorphic variants within the IL-13 promoter in conditioning susceptibility to SMA remain largely unexplored. As such, the association between the IL-13 variants -7402 T/G (rs7719175) and -4729G/A (rs3091307) and susceptibility to SMA was determined in children (n = 387) presenting with clinical symptoms of falciparum malaria and resident in a holoendemic transmission region in western Kenya. Our results indicated no difference in the proportions of individual genotypes among children presenting with non-SMA (n = 222) versus SMA (n = 165). Similarly, there was no associations between the individual genotypes (-7402 T/G and -4729G/A) and SMA. Additional analyses, however, revealed that proportions of individuals with -7402 T/-4729A (TA) haplotype was significantly higher in children presenting with SMA than non-SMA group (P = 0.043). A further multivariate logistic regression analyses, controlling for confounding factors, demonstrated that carriage of the TA haplotype was associated with increased susceptibility to SMA (OR; 1.564, 95% CI; 1.023-2.389, P = 0.039). In addition, circulating levels of IL-13 were comparable between the clinical groups as well as across genotypes and haplotypes. Collectively, findings presented here suggest that haplotypes within the IL-13 promoter at -7402 T/G and -4729G/A may modulate SMA pathogenesis, but do not affect circulating IL-13 levels.
EcoTILLING in Beta vulgaris reveals polymorphisms in the FLC-like gene BvFL1that are associated with annuality and winter hardiness
Authors: Frerichmann Sebastian LM , Kirchhoff Martin , Müller Andreas E , Scheidig Axel J , Jung Christian , Kopisch-Obuch Friedrich J 
Published: March 2013

Abstract

Background
Sugar beet (Beta vulgaris ssp. vulgaris L.) is an important crop for sugar and biomass production in temperate climate regions. Currently sugar beets are sown in spring and harvested in autumn. Autumn-sown sugar beets that are grown for a full year have been regarded as a cropping system to increase the productivity of sugar beet cultivation. However, for the development of these “winter beets” sufficient winter hardiness and a system for bolting control is needed. Both require a thorough understanding of the underlying genetics and its natural variation.

Results
We screened a diversity panel of 268 B. vulgaris accessions for three flowering time genes via EcoTILLING. This panel had been tested in the field for bolting behaviour and winter hardiness. EcoTILLING identified 20 silent SNPs and one non-synonymous SNP within the genes BTC1, BvFL1 and BvFT1, resulting in 55 haplotypes. Further, we detected associations of nucleotide polymorphisms in BvFL1 with bolting before winter as well as winter hardiness.

Conclusions
These data provide the first genetic indication for the function of the FLC homolog BvFL1 in beet. Further, it demonstrates for the first time that EcoTILLING is a powerful method for exploring genetic diversity and allele mining in B. vulgaris.
Anti-inflammatory effects of triptolide improve left ventricular function in a rat model of diabetic cardiomyopathy
Authors: Wen He-Ling , Liang Zhong-Shu , Zhang Rui , Yang Kan 
Published: March 2013

Abstract

Aims
Given the importance of inflammation in the onset and progression of diabetic cardiomyopathy, we investigated the potential protective effects of triptolide, an anti-inflammatory agent, in streptozotocin-induced diabetic rat model and in H9c2 rat cardiac cells exposed to high glucose.

Methods and results
Diabetic rats were treated with triptolide (100, 200, or 400 μg/kg/day respectively) for 6 weeks. At the end of this study, after cardiac function measurements were performed, rats were sacrificed and their hearts were harvested for further histologic and molecular biologic analysis. Enhanced activity and expression of nuclear factor-kappaB (NF-κB) p65 in diabetic hearts were associated with increased inflammatory response, as demonstrated by increased pro-inflammatory cytokines, cell adhesion molecules and invading inflammatory cells, as well as increased fibrosis, in line with impaired left ventricular function. Triptolide attenuated these morpho-functional alterations. Furthermore, triptolide (20 ng/ml) also attenuated high glucose-induced inflammation in H9c2 rat cardiac cells.

Conclusion
Our data demonstrate that anti-inflammatory effects of triptolide involving the NF-κB signaling pathway can improve left ventricular function under diabetic conditions, suggesting triptolide treatment might be beneficial in diabetic cardiomyopathy.
Association of BDNF and BMPR1A with clinicopathologic parameters in benign and malignant gallbladder lesions
Authors: Xiong Li , Deng Xiaofeng , Wen Yu , Yang Zhulin , Miao Xiongying 
Published: March 2013

Abstract

Background
Neurotrophic factors such as brain derived neurotrophic factor (BDNF) are synthesized in a variety of neural and non-neuronal cell types and regulate survival, proliferation and apoptosis. In addition, bone morphogenetic proteins (BMPs) inhibit the proliferation of pulmonary large carcinoma cells bone morphogenetic protein receptor, type IA (BMPR1A). Little is known about the expression of BDNF or BMPR1A in malignant gall bladder lesions. This study was to evaluate BDNF and BMPR1A expression and evaluate the clinicopathological significance in benign and malignant lesions of the gallbladder.

Methods
The BDNF and BMPR1A expression of gallbladder adenocarcinoma, peritumoral tissues, adenoma, polyp and chronic cholecystitis were Immunohistochemically determined.

Results
BDNF expression was significantly higher in gallbladder adenocarcinoma than in peritumoral tissues, adenoma, polyps and chronic cholecystitis samples. However, BMPR1A expression was significantly lower in gallbladder adenocarcinoma than in peritumoral tissues, adenomas, polyps and chronic cholecystitis tissues. The specimens with increased expression of BDNF in the benign lesions exhibited moderate- or severe-dysplasia of gallbladder epithelium. BDNF expression was significantly lower in well-differentiated adenocarcinomas with maximum tumor diameter <2 cm, no metastasis to lymph nodes, and no invasion of regional tissues compared to poorly-differentiated adenocarcinomas with maximal tumor diameter >2 cm, metastasis of lymph node, and invasiveness of regional tissues in gallbladder adenocarcinoma. BMPR1A expression were significantly higher in the well-differentiated adenocarcinoma with maximal tumor diameter <2 cm, no metastasis of lymph node, and no invasion of regional tissues compared to poorly-differentiated adenocarcinomas with maximal tumor diameter >2 cm, metastasis of lymph node, and invasiveness of regional tissues in gallbladder. Univariate Kaplan-Meier analysis indicated increased expression of BDNF or decreased expression of BMPR1A was associated with decreased disease specific survival (DSS) rates. Similarly, multivariate Cox regression analysis showed increased expression of BDNF or decreased expression of BMPR1A are independent predictors of poor DSS rates in gallbladder adenocarcinoma.

Conclusions
In gallbladder malignancies, the increased expression of BDNF and decreased expression of BMPR1A were associated with increased risk of metastasis, regional invasion and mortality. They might serve as novel indicators of gallbladder adenocarcinoma outcomes, which may prove valuable for the development of personalized therapeutic paradigms.
Variable Ki67 proliferative index in 65 cases of nodular fasciitis, compared with fibrosarcoma and fibromatosis
Authors: Lin Xu-Yong , Wang Liang , Zhang Yong , Dai Shun-Dong , Wang En-Hua 
Published: March 2013

AbstractAbstractNodular fasciitis is the most common pseudosarcomatous lesion of soft tissue. Ki67 was considered as a useful marker for distinguishing some benign and malignant lesions. To study the usefulness of Ki67 in diagnosis of nodular fasciitis, the expression of Ki67 was examined by using immunostaining in 65 nodular fasciitis specimens, 15 desmoid fibromatosis specimens and 20 fibrosarcoma specimens. The results showed that there was a variable Ki67 index in all 65 cases of nodular fasciitis, and the mean labeling index was 23.71±15.01%. In majority (70.77%) of all cases,the index was ranged from 10% to 50%, in 6.15% (4/65) of cases the higher Ki67 index (over 50%) could be seen. The Ki67 proliferative index was closely related to duration of lesion, but not to age distribution, lesion size, sites of lesions and gender. Moreover, the mean proliferative index in desmoid fibromatosis and fibrosarcoma was 3.20±1.26% and 26.15±3.30% respectively. The mean Ki67 index of nodular fasciitis was not significantly lower than fibrosarcoma, but higher than desmoid fibromatosis. The variable and high Ki67 index in nodular fasciitis may pose a diagnostic challenge. We should not misdiagnose nodular fasciitis as a sarcoma because of its high Ki67 index. The recurrence of nodular fasciitis is rare; and the utility of Ki67 immunostaining may be not suitable for recurrence assessment in nodular fasciitis.Virtual slidesThe virtual slide(s) for this article can be found here:http://www.diagnosticpathology.diagnomx.eu/vs/4782335818876666
The last generation of bacterial growth in limiting nutrient
Authors: Bren Anat , Hart Yuval , Dekel Erez , Koster Daniel , Alon Uri 
Published: March 2013

Abstract

Background
Bacterial growth as a function of nutrients has been studied for decades, but is still not fully understood. In particular, the growth laws under dynamically changing environments have been difficult to explore, because of the rapidly changing conditions. Here, we address this challenge by means of a robotic assay and measure bacterial growth rate, promoter activity and substrate level at high temporal resolution across the entire growth curve in batch culture. As a model system, we study E. coli growing under nitrogen or carbon limitation, and explore the dynamics in the last generation of growth where nutrient levels can drop rapidly.

Results
We find that growth stops abruptly under limiting nitrogen or carbon, but slows gradually when nutrients are not limiting. By measuring growth rate at a 3 min time resolution, and inferring the instantaneous substrate level, s, we find that the reduction in growth rate μ under nutrient limitation follows Monod’s law,

μ
=

μ
0

s

k
s

+
s

. By following promoter activity of different genes we found that the abrupt stop of growth under nitrogen or carbon limitation is accompanied by a pulse-like up-regulation of the expression of genes in the relevant nutrient assimilation pathways. We further find that sharp stop of growth is conditional on the presence of regulatory proteins in the assimilation pathway.

Conclusions
The observed sharp stop of growth accompanied by a pulsed expression of assimilation genes allows bacteria to compensate for the drop in nutrients, suggesting a strategy used by the cells to prolong exponential growth under limiting substrate.
Design and evaluation of Lumefantrine – Oleic acid self nanoemulsifying ionic complex for enhanced dissolution
Authors: Patel Ketan , Sarma Vidur , Vavia Pradeep 
Published: March 2013

Abstract

Background
Lumefantrine, an antimalarial molecule has very low and variable bioavailability owing to its extremely poor solubility in water. It is recommended to be taken with milk to enhance its solubility and bioavailability. The aim of present study was to develop a Self Nanoemulsifying Delivery system (SNEDs) of lumefantrine (LF) to achieve rapid and complete dissolution independent of food-fat and surfactant in dissolution media.

Methods
Solubility of LF in oil, co-solvent/co-surfactant and surfactant solution and emulsification efficiency of surfactant were analyzed to optimize the LF loaded self nanoemulsifying preconcentrate. Effect of LF-oleic acid complexation on emulsification, droplet size, zeta potential and dissolution were investigated. Effect of milk concentration and fat content on saturation solubility and dissolution of LF was investigated. Dissolution of marketed formulation and LF-SNEDs was carried out in pH 1.2 and pH 6.8 phosphate buffer.

Results
LF exhibited very high solubility in oleic acid owing to complexation between tertiary amine of LF and carboxyl group of oleic acid (OA). Cremophore EL and medium chain monoglyceride were selected surfactant and co-surfactant, respectively. Significantly smaller droplet size (37 nm), shift in zeta potential from negative to positive value, very high drug loading in lipid based system (> 10%), no precipitation after dissolution are the major distinguish characteristics contributed by LF-OA complex in the SNED system. Saturation solubility and dissolution study in milk containing media pointed the significant increment in solubility of LF in the presence of milk-food fat. LF-SNEDs showed > 90% LF release within 30 min in pH 1.2 while marketed tablet showed almost 0% drug release.

Conclusion
Self nanoemulsification promoting ionic complexation between basic drug and oleic acid hold great promise in enhancing solubility of hydrophobic drugs.