bluuebunny/crossref_metadata_2025_split huggingface dataset:
Exploring the biogeography, morphology, and phylogeny of the condylostomatid ciliates (Alveolata, Ciliophora, Heterotrichea), with establishment of four new Condylostoma species and a revision including redescriptions of five species found in China
Authors: Chi Yong , Wei Fan , Tang Danxu , Mu Changjun , Ma Honggang , Wang Zhe , Al-Rasheid Khaled A. S. , Hines Hunter N. , Chen Xiangrui 
Published: June 2024

AbstractSpecies of the ciliate class Heterotrichea Stein, 1859 are a cosmopolitan group of unicellular eukaryotic microorganisms, many of which have been widely used as models in various fields of research such as regenerative biology, functional ecology, environmental toxicology, and symbiotic behavior. However, species identification in the heterotrich family Condylostomatidae, especially the most species-rich and type genus Condylostoma Bory de Saint-Vincent, 1824, remains challenging due to incomplete original descriptions, few reliable distinguishing characters, and overlapping features between different species. This study presents an updated revision of Condylostoma and its related genus Condylostomides da Silva Neto, 1994 based on descriptions of five species, including nine populations collected from China, using both morphological and molecular methods. The main findings are as follows: (1) 43 nominal species and about 130 populations are reviewed, resulting in the recognition of 30 valid species of Condylostoma and eight valid species of Condylostomides; (2) keys, synonyms, biogeographic distributions and amended/improved diagnoses of all valid species are provided; (3) based on the available data, four new Condylostoma species (C. marinum sp. nov., C. petzi sp. nov., C. villeneuvei sp. nov., and C. microstomum sp. nov.), one new combination (Condylostomides minimus (Dragesco, 1954) comb. nov. & nom. corr.), and two corrected names (Condylostoma ancestrale Villeneuve-Brachon, 1940 nom. corr. and Condylostomides nigrus (Dragesco, 1960) nom. corr.) are suggested; (4) cryptic species are detected and proposed for the first time to form the Condylostoma curvum species complex; (5) three highly confusing Condylostoma species, C. kris, C. spatiosum, and C. minutum, are redefined for the first time based on modern taxonomic methods; (6) a ‘flagship’ species, Condylostomides coeruleus, is recorded for the first time from the continent of Asia, substantially expanding its biogeography; (7) ciliature adjacent to the distal end of the paroral membrane within the family Condylostomatidae is uniformly defined as frontal membranelles and is classified into three patterns according to the arrangement of kinetosomes, which serve as important key features.
Use of 125 iodine seeds for intra-operative localization of nonpalpable breast lesions (ROLLIS): analysis of the implant of 1757 seeds in 1477 patients
Authors: Penna Antônio Campbell , da Silva Franca Carlos Antônio , de Oliveira Maria Veronica Fonseca Torres , da Fonseca Lea Mirian Barbosa , de Azevedo Brant Saldanha Paula , Balen Jacir Luiz , Rocha Augusto Cesar Peixoto , Pereira Fernanda Philadelpho Arantes , Andrade Valeska Caldoncelli , Machado Rafael Henrique Szymanski , Calas Maria Julia Gregório , Costa Mauricio A. M. 
Published: June 2024

Abstract
Objective
To analyze the feasibility, efficacy and results of the use of 125Iodine seeds for intra-operative localization of nonpalpable breast lesions.

Method
Retrospective review of 1477 patients referred by various breast specialist surgeons, with radiologically detected but clinically nonpalpable microcalcifications, asymmetric density or nodules, submitted to pre-operatory 125Iodine seed implant, between July 2012 and September 2023. A total of 1757 seeds were implanted in ordinary radiologic departments, supported by ultrasonography or mammography exams, chosen according to the morphologic aspect of the lesion. Radioguided surgical procedure took place on the same day or few days after the implant of the seeds, with the help of a radiation detector called Gamaprobe, which directs the surgeons towards the radioactive seeds and to the lesion to be resected.

Results
All implants were performed as outpatient procedures, with patients immediately returning to their daily activities. No complications such as pain, bleeding, infection, and hematoma were recorded. Pathologists had no difficulty in preparing the surgical specimens for histopathologic analysis. Surgical safety margins were considered adequate in all pathologic reports, with no need for re-operations. The healing process was not jeopardized by radiation, and the surgeons were pleased with the improvement in intraoperative lesion localizations and the shortening on operatory time. Cosmetic results were well accepted by the patients.

Conclusion
The 125Iodine seed implant is an effective alternative method for intraoperative localization of radiologically detectable and clinically nonpalpable breast lesions.
Towards eco-friendly cement-based materials: a review on incorporating oil shale ash
Authors: Silva J. V. S. , Reis E. D. , de Azevedo R. C. , Poggiali F. S. J. 
Published: June 2024

AbstractConsidering the growing environmental concerns associated with construction industry activities, this article reviews the potential use of oil shale ash (OSA) as a cement substitute in cementitious materials. Specific issues to be investigated include the ideal OSA content to be incorporated into the mix, the optimum oil shale (OS) burning temperature for obtaining the ash, the influence of the specific area and chemical composition of the OSA on the composites, as well as the effects of its addition on the fresh state, mechanical and durability properties. To this end, the ProKnow-C systematic literature review process was adopted for the first time to study this topic, resulting in a portfolio of 14 manuscripts associated with the questions to be analyzed. The primary outcomes include: OSA contents between 10 and 30% are suitable for replacing cement; the ideal burning temperature for OS is between 600 and 800 ºC; high specific areas (between 6000 and 8000 cm2/g) improve pozzolanic activity; high OSA contents may require the use of water-reducing additives to improve workability; incorporating OSA into Portland cement-based materials can improve their compressive strength and durability. These conclusions highlight the importance of understanding the effects of incorporating OSA in developing cementitious materials, providing a basis for future research.
Longitudinal associations between post-traumatic stress and post-traumatic growth among older adults 11 years after a disaster
Authors: Hikichi Hiroyuki , Taku Kanako , Aida Jun , Kondo Katsunori , Kawchi Ichiro 
Published: June 2024

Abstract

Aims
Previous studies have reported inconsistent findings regarding the association between post-traumatic stress (PTS) and post-traumatic growth (PTG). Three major issues could account for this inconsistency: (1) the lack of information about mental health problems before the disaster, (2) the concept of PTG is still under scrutiny for potentially being an illusionary perception of personal growth and (3) the overlooking of PTS comorbidities as time-dependent confounding factors. To address these issues, we explored the associations of PTS and PTG with trauma-related diseases and examined the association between PTS and PTG using marginal structural models to address time-dependent confounding, considering pre-disaster covariates, among older survivors of the 2011 Japan Earthquake and Tsunami.

Methods
Seven months before the disaster, the baseline survey was implemented to ask older adults about their health in a city located 80 km west of the epicentre. After the disaster, we implemented follow-up surveys approximately every 3 years to collect information about PTS and comorbidities (depressive symptoms, smoking and drinking). We asked respondents about their PTG in the 2022 survey (n = 1,489 in the five-wave panel data).

Results
PTG was protectively associated with functional disability (coefficient −0.47, 95% confidence interval (CI) −0.82, −0.12, P < 0.01) and cognitive decline assessed by trained investigators (coefficient −0.07, 95% CI −0.11, −0.03, P < 0.01) and physicians (coefficient −0.06, 95% CI −0.11, −0.02, P < 0.01), while PTS was not significantly associated with them. Severely affected PTS (binary variable) was associated with higher PTG scores, even after adjusting for depressive symptoms, smoking and drinking as time-dependent confounders (coefficient 0.35, 95% CI 0.24, 0.46, P < 0.01). We also found that an ordinal variable of the PTS score had an inverse U-shaped association with PTG.

Conclusion
PTG and PTS were differentially associated with functional and cognitive disabilities. Thus, PTG might not simply be a cognitive bias among survivors with severe PTS. The results also indicated that the number of symptoms in PTS had an inverse U-shaped association with PTG. Our findings provided robust support for the theory of PTG, suggesting that moderate levels of psychological struggles (i.e., PTS) are essential for achieving PTG, whereas intense PTS may hinder the attainment of PTG. From a clinical perspective, interventions that encourage social support could be beneficial in achieving PTG by facilitating deliberate rumination.
Response of Land Surface Albedo to Fire Disturbance in the Sierra Nevada Seasonal Snow Zone Over the MODIS Record
Authors: Gayler J. M. , Skiles S. M. 
Published: June 2024

AbstractWildfires in the snow zone can brighten winter and spring landscapes by removing forest canopy, revealing underlying snow cover. Land surface albedo (LSA) alterations associated with transitioning from a canopied, snow‐hiding vegetation regime to a snow‐revealing landscape have impacts on the surface energy balance, with implications for climate and water supply. Forest fires are increasing in frequency, size, and elevation, but the change in LSA due to fire in the seasonal snow zone (SSZ) is poorly understood. This study addresses this knowledge gap for the Sierra Nevada, where recent climatic changes have contributed to droughts, earlier and more rapidly declining snowpacks, and worsening wildfire impacts. Remotely sensed snow fraction and LSA data from Moderate Resolution Imaging Spectrometer were used to assess the impact of wildfire on landscapes in the Sierra Nevada SSZ by comparing LSA in burn scars to unburned control areas and the historical average LSA, then quantifying the surface radiative forcing (RF) associated with change in LSA. Among high and moderate burn severity fires, winter LSA varied depending on snow cover, land characteristics, and burn severity, ranging from 0.12 in low‐snow fire scars to 0.47 in snow‐covered fire scars. This study adds to understanding of how landscapes respond to wildfires and the subsequent impacts on the surface energy balance.
Impacts of Atlantic and Pacific Multidecadal Variability on South American Precipitation and Temperature in the CESM Simulations and Observations
Authors: He Zhaoxiangrui , Dai Aiguo , Vuille Mathias 
Published: June 2024

AbstractThe Community Earth System Model version 1 (CESM1) and version 2 (CESM2)'s abilities to simulate the impacts of Atlantic multidecadal variability (AMV) and Pacific multidecadal variability (PMV) on South American precipitation and temperature have not been assessed, and how the AMV and PMV modulate each other's influences on South American climate is not well understood. Here we use observations, reanalyses, and CESM1 and CESM2 simulations from 1920 to 2015 to study those problems. The models can reproduce the observed precipitation and temperature responses to AMV well, but can only roughly reproduce such responses to PMV. The precipitation response over the South Atlantic convergence zone (SACZ) is better simulated by CESM2 compared to CESM1, which is associated with an improved horizontal moisture flux over this region. However, the models cannot accurately simulate the observed differences between the influences of Pacific interannual and multidecadal variability on South American precipitation and temperature. The impacts of AMV and PMV on South American precipitation are modulated by the other mode via changes in horizontal moisture flux over the SACZ and River Plate basin in summer, as well as changes in vertical motion over the equatorial regions in winter. Similarly, the impacts of AMV and PMV on South American temperature are also modulated by the other mode. Over water‐limited regions, such as northeastern Brazil and southern Argentina, the precipitation and temperature responses are anti‐correlated, possibly via surface evaporation.
Synchronous Tropical Andean Hydroclimate Variability During the Last Millennium
Authors: Bird B. W. , Steinman B. A. , Escobar J. , Correa‐Metrio A. , Holper K. , Gibson D. K. , Mark S. , Fonseca H. 
Published: June 2024

AbstractThe impact of latitudinal variations in the Intertropical Convergence Zone (ITCZ) on northern Andean hydroclimate during the Medieval Climate Anomaly (MCA; 950–1,150 CE) and Little Ice Age (LIA; 1,300–1,850 CE) is uncertain. Synthesis of two new lacustrine paleoclimate records from the Eastern Colombian Andes with existing circum‐Andean records shows that effective moisture anomalies were synchronous and in phase across the tropical Andes during the last millennium. During the MCA, when the ITCZ was shifted northward, topographically controlled responses in the northern Andes to vigorous atmospheric convection resulted in low precipitation and high evaporation, while precipitation was also reduced in the southern tropical Andes. During the LIA, precipitation decreased in the northern Andes as the ITCZ migrated southward but was offset by cooling that lowered evaporation, establishing high effective moisture. In the southern tropical Andes, the southward ITCZ position simultaneously strengthened precipitation, increasing effective moisture. MCA‐like responses to continued warming trends could similarly reduce northern Andean precipitation while increasing evaporation, thereby lowering effective moisture and possibly reducing water resource availability.
Nitrogen Cycling in Reservoir Drawdown Areas and the Impacts on Water Quality
Authors: Liu Dongsheng , Chen Qiuwen , Maavara Taylor , Zhang Jianyun , Chen Yuchen 
Published: June 2024

AbstractReservoir drawdown areas (DAs) can be both important nitrogen (N) sources to river networks and hot spots for N removal from freshwater ecosystems. The net effect of DAs on the N availability in reservoirs within a full hydrological cycle remains unclear. In this paper, the N dynamics in the DA of the Three Gorges Reservoir, Yangtze River, China, are investigated through a combination of discrete and continuous in situ observations and sampling over a span of 2 years, complemented by numerical modeling. We show that the DA is a net source of N to the water column, and that about 30% of the total annual N load released from the DA is mitigated by the sediment through denitrification and capture. The annual net load of the total N from the DA to the reservoir is ca. 0.59 kg per meter along the river, which is on the same order of magnitude as the input load from the density current of the Yangtze River to its tributaries, generally considered to be the primary driver of eutrophication in tributaries. N release in the DA mainly occurs during the drying period, whereas denitrification in the sediment mostly takes place during the flooding period when the oxido‐reducing potential is low. Our findings quantify and therefore clarify the N source/sink dynamics from the DA to the reservoir, offering a new perspective on the importance of DA nutrient loading in decision‐making related to integrated management of inundated lands to alleviate reservoir eutrophication by river damming.
Enhanced Removal of River‐Borne Nitrate in Bioturbated Hyporheic Zone
Authors: Jiang Qihao , Shrivastava Shivansh , Jin Guangqiu , Tang Hongwu , Xu Junzeng , Xu Jing , Huang Changchun 
Published: June 2024

AbstractThe influence of bioturbation induced by bottom‐dwelling macrozoobenthos on nitrogen dynamics in lotic stream sediments remains unclear. In this work, we advance the understanding of faunal bioturbation in lotic environments by developing a fully‐coupled flow and multicomponent reactive transport model and investigate the influence of sediment reworking and burrow ventilation processes on nitrogenous transformations. The model results indicate that sediment reworking and burrow ventilation significantly increase nitrate (NO3−) influx, penetration depth, and reaction rates in the streambed. Denitrification rates were observed up to three times higher in beds with U‐shaped burrows compared to flatbeds. The ratio of mound height to stream water depth ratio (h/H0) is a dominant control on determining the relative importance of the sediment reworking and burrow ventilation processes in modulating nitrogenous reactions. A power‐law scaling framework is ultimately proposed to predict NO3− removal efficiency based on the Damköhler number in bioturbated lotic streambeds.
Chiral quantum heating and cooling with an optically controlled ion
Authors: Bu Jin-Tao , Zhang Jian-Qi , Ding Ge-Yi , Li Jia-Chong , Zhang Jia-Wei , Wang Bin , Ding Wen-Qiang , Yuan Wen-Fei , Chen Liang , Zhong Qi , Keçebaş Ali , Özdemir Şahin K. , Zhou Fei , Jing Hui , Feng Mang 
Published: June 2024

AbstractQuantum heat engines and refrigerators are open quantum systems, whose dynamics can be well understood using a non-Hermitian formalism. A prominent feature of non-Hermiticity is the existence of exceptional points (EPs), which has no counterpart in closed quantum systems. It has been shown in classical systems that dynamical encirclement in the vicinity of an EP, whether the loop includes the EP or not, could lead to chiral mode conversion. Here, we show that this is valid also for quantum systems when dynamical encircling is performed in the vicinity of their Liouvillian EPs (LEPs), which include the effects of quantum jumps and associated noise—an important quantum feature not present in previous works. We demonstrate, using a Paul-trapped ultracold ion, the first chiral quantum heating and refrigeration by dynamically encircling a closed loop in the vicinity of an LEP. We witness the cycling direction to be associated with the chirality and heat release (absorption) of the quantum heat engine (quantum refrigerator). Our experiments have revealed that not only the adiabaticity breakdown but also the Landau–Zener–Stückelberg process play an essential role during dynamic encircling, resulting in chiral thermodynamic cycles. Our observations contribute to further understanding of chiral and topological features in non-Hermitian systems and pave a way to exploring the relation between chirality and quantum thermodynamics.
Impact of vaccine coverage and disruption to health services on COVID-19 in Ukraine
Authors: Costantino Valentina , MacIntyre Chandini R. 
Published: June 2024

AbstractCOVID-19 surveillance in Ukraine ceased after the Russian invasion of the country in 2022, on a background of low vaccination rates of 34.5% for two doses at this time. We conducted a modelling study to estimate the epidemic trajectory of SARS-COV-2 in Ukraine after the start of the war. We use a COVID-19 deterministic Susceptible-Exposed-Infected-Recovered (SEIR) model for Ukraine to estimate the impact of increased vaccination coverage and masking as public health interventions. We fit the model output to case notification data between 6 January and 25 February 2022, then we forecast the COVID-19 epidemic trajectory in different scenarios of mask use and vaccine coverage. In the best-case scenario, 69% of the Ukrainian population would have been infected in the first half of 2022. Increasing mask use from 50 to 80% reduces cases and deaths by 17% and 30% respectively, while increasing vaccination rates to 60% and 9.6% for two and three doses respectively results in a 3% reduction in cases and 28% in deaths. However, if vaccination is increased to a higher coverage of 80% with two doses and 12.8% with three, or mask effectiveness is reduced to 40%, increasing vaccination coverage is more effective. The loss of health services, displacement, and destruction of infrastructure will amplify the risk of COVID-19 in Ukraine and make vaccine programs less feasible. Masks do not need the health infrastructure or cold-chain logistics required for vaccines and are more feasible for rapid epidemic control during war. However, increasing vaccine coverage will save more lives. Vaccination of refugees who have fled to other countries can be more feasibly achieved.
Improving structural and magnetic properties of zinc stannate thin films through nickel doping via sol–gel method
Authors: Cinar Ibrahim 
Published: June 2024

AbstractTernary oxides are currently emerging as promising materials for optoelectronic devices and spintronics, surpassing binary oxides in terms of their superior properties. Among these, zinc stannate (Zn2SnO4) stands out due to its stability and attractive physical characteristics. However, despite its outstanding attributes, there is a need to further develop its magnetic properties for spintronic applications. In this study, Ni-doped Zn2SnO4 thin films were synthesized using the sol–gel method, and their magnetic characteristics were investigated for the first time. X-ray diffraction analysis confirmed the high crystallinity of the synthesized samples, even after the incorporation of Ni dopants, without any secondary phases. SEM imaging revealed the cubic structure morphology of the thin films. An increase in the bandgap, dependent on the Ni dopant concentration, was observed for doped zinc stannate, suggesting potential for tailored electronic properties. FTIR spectroscopy confirmed the presence of functional groups within the material. Notably, the magnetic properties of the thin films were analyzed using a vibrating sample magnetometer (VSM), revealing diamagnetic behavior for pure zinc stannate and ferromagnetic properties for Ni-doped Zn2SnO4, which increased with dopant concentration. Overall, the results highlight the excellent structural, optical, and ferromagnetic properties of Ni-doped Zn2SnO4 thin films, positioning them for diverse applications, particularly in optoelectronic and spintronic technology.