bluuebunny/crossref_metadata_2025_split huggingface dataset:
Enhancing hydrodynamic forces through miniaturized control of square cylinders using the lattice Boltzmann method
Authors: Refaie Ali Ahmed , Abbasi Waqas Sarwar , Younus Rabia , Rahman Hamid , Nadeem Sumaira , Majeed Afraz Hussain , Ahmad Irshad 
Published: July 2024

AbstractThis study investigates the influence of small control cylinders on the fluid dynamics around a square cylinder using the Lattice Boltzmann Method (LBM). Varying the gaps (L) between the main and control cylinders from 0 to 6, four distinct flow regimes are identified: the solo body regime (SBR), shear layer reattachment (SLR), suppressed fully developed flow (SFDF), and intermittent shedding (IS). The presence of control cylinders results in significant reductions in flow-induced forces, with drag coefficient (CD) and root mean square values of drag and lift coefficients (CDrms and CLrms) decreasing by approximately 31%, 90%, and 81%, respectively. The SFDF flow regime exhibits the lowest fluid forces compared to other regimes. The effects of tiny control cylinders on the fluid flow characteristics of a square cylinder are examined using the Lattice Boltzmann Method (LBM) in this research work. The gaps (L) between the main and control cylinders are varied in the range from 0 to 6. The size of each control cylinder is equal to one-fifth of the primary cylinder. According to the findings, there are four distinct flow regimes as the gap spacing varies: solo body regime (SBR), shear layer reattachment (SLR), suppressed fully developed flow (SFDF), and intermittent shedding (IS) for gap spacing ranges 0 ≤ L ≤ 0.2, 0.3 ≤ L ≤ 0.9, 1 ≤ L ≤ 3, and 3.2 ≤ L ≤ 6, respectively. Additionally, it has been noted that the amplitude of variable lift force is reduced when the gap separation between the main and control cylinders is increased. When compared to solo cylinder values, it is found that the presence of small control cylinders in the flow field results in a considerable reduction of flow-induced forces. The SFDF flow regime was determined to have the lowest fluid forces compared to the other flow regimes studied. Our findings highlight the efficacy of small control cylinders in mitigating flow-induced forces and controlling flow characteristics. The LBM proves to be a valuable computational technique for such fluid flow problems.
Quantifying local and global mass balance errors in physics-informed neural networks
Authors: Mamud M. L. , Mudunuru M. K. , Karra S. , Ahmmed B. 
Published: July 2024

AbstractPhysics-informed neural networks (PINN) have recently become attractive for solving partial differential equations (PDEs) that describe physics laws. By including PDE-based loss functions, physics laws such as mass balance are enforced softly in PINN. This paper investigates how mass balance constraints are satisfied when PINN is used to solve the resulting PDEs. We investigate PINN’s ability to solve the 1D saturated groundwater flow equations (diffusion equations) for homogeneous and heterogeneous media and evaluate the local and global mass balance errors. We compare the obtained PINN’s solution and associated mass balance errors against a two-point finite volume numerical method and the corresponding analytical solution. We also evaluate the accuracy of PINN in solving the 1D saturated groundwater flow equation with and without incorporating hydraulic heads as training data. We demonstrate that PINN’s local and global mass balance errors are significant compared to the finite volume approach. Tuning the PINN’s hyperparameters, such as the number of collocation points, training data, hidden layers, nodes, epochs, and learning rate, did not improve the solution accuracy or the mass balance errors compared to the finite volume solution. Mass balance errors could considerably challenge the utility of PINN in applications where ensuring compliance with physical and mathematical properties is crucial.
Clonal growth characteristics and diversity patterns of different Clintonia udensis (Liliaceae) diploid and tetraploid cytotypes in the Hualongshan Mountains
Authors: Han Mian , Qie Qiyang , Liu Meilan , Meng Huiqin , Wu Tiantian , Yang Yadi , Niu Lingling , Sun Genlou , Wang Yiling 
Published: July 2024

AbstractPolyploidization plays an important role in plant evolution and biodiversity. However, intraspecific polyploidy compared to interspecific polyploidy received less attention. Clintonia udensis (Liliaceae) possess diploid (2n = 2x = 14) and autotetraploid (2n = 4x = 28) cytotypes. In the Hualongshan Mountains, the autotetraploids grew on the northern slope, while the diploids grew on the southern slopes. The clonal growth characteristics and clonal architecture were measured and analyzed by field observations and morphological methods. The diversity level and differentiation patterns for two different cytotypes were investigated using SSR markers. The results showed that the clonal growth parameters, such as the bud numbers of each rhizome node and the ratio of rhizome branches in the autotetraploids were higher than those in the diploids. Both the diploids and autotetraploids appeared phalanx clonal architectures with short internodes between ramets. However, the ramets or genets of the diploids had a relatively scattered distribution, while those of the autotetraploids were relatively clumping. The diploids and autotetraploids all allocated more biomass to their vegetative growth. The diploids had a higher allocation to reproductive organs than that of autotetraploids, which indicated that the tetraploids invested more resources in clonal reproduction than diploids. The clone diversity and genetic diversity of the autotetraploids were higher than that of the diploids. Significant genetic differentiation between two different cytotypes was observed (P < 0.01). During establishment and evolution, C. udensis autotetraploids employed more clumping phalanx clonal architecture and exhibited more genetic variation than the diploids.
Frequency-hopping along with resolution-turning for fast and enhanced reconstruction in ultrasound tomography
Authors: Quang-Huy Tran , Sharma Bhisham , Theu Luong Thi , Tran Duc-Tan , Chowdhury Subrata , Karthik Chandran , Gurusamy Saravanakumar 
Published: July 2024

AbstractThe distorted Born iterative (DBI) method is considered to obtain images with high-contrast and resolution. Besides satisfying the Born approximation condition, the frequency-hopping (FH) technique is necessary to gradually update the sound contrast from the first iteration and progress to the actual sound contrast of the imaged object in subsequent iterations. Inspired by the fact that the higher the frequency, the higher the resolution. Because low-frequency allows for low-resolution object imaging, hence for high-resolution imaging requirements, using low-frequency to possess a high-resolution image from the first iteration will be less efficient. For an effective reconstruction, the object’s resolution at low frequencies should be small. And similarly, with high frequencies, the object resolution should be larger. Therefore, in this paper, the FH, and the resolution-turning (RT) technique are proposed to obtain object images with high-contrast and -resolution. The convergence speed in the initial iterations is rapidly achieved by utilizing low frequency in the frequency-turning technique and low image resolution in the resolution-turning technique. It is crucial to ensure accurate object reconstruction for subsequent iterations. The desired spatial resolution is attained by employing high frequency and large image resolution. The resolution-turning distorted Born iterative (RT-DBI) and frequency-hopping distorted Born iterative (FH-DBI) solutions are thoroughly investigated to exploit their best performance. This makes sense because if it is not good to choose the number of iterations for the frequencyf1in FH-DBI and for the resolution ofN1 × N1in RT-DBI, then these solutions give even worse quality than traditional DBI. After that, the RT-FH-DBI integration was investigated in two sub-solutions. We found that the lower frequencyf1used both before and after the RT would get the best performance. Consequently, compared to the traditional DBI approaches, the normalized error and total runtime for the reconstruction process were dramatically decreased, at 83.6% and 18.6%, respectively. Besides fast and quality imaging, the proposed solution RT-FH-DBI is promised to produce high-contrast and high-resolution object images, aiming at object reconstruction at the biological tissue. The development of 3D imaging and experimental verification will be studied further.
Air quality in a revitalized special economic zone at the center of an urban monocentric agglomeration
Authors: Cichowicz Robert , Dobrzański Maciej 
Published: July 2024

AbstractIn this study, we have examined the air quality within a revitalized, post-industrial urban area in Łódź, Poland. The use of Dron technology with mobile measurement equipment allowed for accurate assessment of air quality (particulate matter and gaseous pollutants) and factors influencing air quality (wind speed and direction) on a local scale in an area of 0.18 km2 and altitudes from 2 to 50 m. The results show that the revitalization carried out in the Lodz special economic zone area contributed to eliminate internal air pollution emitters through the use of ecological and effective heat sources. The exceedances permissible concentration values were local, and concerned mainly the higher measurement zones of the troposphere (more than 30 m above ground level). In the case of gaseous pollutants, higher wind speeds were associated with a decrease in the concentration of SO2 and an increase in H2S concentration. In both cases, the wind contributed to the occurrence of local areas of accumulation of these gaseous pollutants in the spaces between buildings or wooded areas.
First detection of PCV4 in swine in the United States: codetection with PCV2 and PCV3 and direct detection within tissues
Authors: Kroeger Molly , Vargas-Bermudez Diana S. , Jaime Jairo , Parada Julian , Groeltz Jennifer , Gauger Philip , Piñeyro Pablo 
Published: July 2024

AbstractSince PCV4 was first described in 2019, the virus has been identified in several countries in Southeast Asia and Europe. Most studies have been limited to detecting PCV4 by PCR. Thus, PCV4 has an unclear association with clinical disease. This study utilized 512 porcine clinical lung, feces, spleen, serum, lymphoid tissue, and fetus samples submitted to the ISU-VDL from June–September 2023. PCV4 was detected in 8.6% of samples with an average Ct value of 33. While detection rates among sample types were variable, lymphoid tissue had the highest detection rate (18.7%). Two ORF2 sequences were obtained from lymphoid tissue samples and had 96.36–98.98% nucleotide identity with reference sequences. Direct detection of PCV4 by RNAscope revealed viral replication in B lymphocytes and macrophages in lymph node germinal centers and histiocytic and T lymphocyte infiltration in the lamina propria of the small intestine. PCV4 detection was most commonly observed in nursery to finishing aged pigs displaying respiratory and enteric disease. Coinfection with PCV2, PCV3, and other endemic pathogens was frequently observed, highlighting the complex interplay between different PCVs and their potential roles in disease pathogenesis. This study provides insights into the frequency of detection, tissue distribution, and genetic characteristics of PCV4 in the US.
Effects of edge disorder on the stability of quantum oscillations in two-dimensional coupled systems
Authors: Lu Yan-Yan , Mu Zhao-Nan , Huang Yu , Guo Gui-Rong , Li Han-Hui , Xiong Shao-Jie , Zhong Jian-Xin 
Published: July 2024

AbstractThis paper utilizes the theory of quantum diffusion to analyze the electron probability and spreading width of a wavepacket on each layer in a two-dimensional (2D) coupled system with edge disorder, aiming to clarify the effects of edge disorder on the stability of the electron periodic oscillations in 2D coupled systems. Using coupled 2D square lattices with edge disorder as an example, we show that, the electron probability and wavepacket spreading width exhibit periodic oscillations and damped oscillations, respectively, before and after the wavepacket reaches the boundary. Furthermore, these electron oscillations exhibit strong resistance against disorder perturbation with a longer decay time in the regime of large disorder, due to the combined influences of ordered and disordered site energies in the central and edge regions. Finally, we numerically verified the universality of the results through bilayer graphene, demonstrating that this anomalous quantum oscillatory behavior is independent of lattice geometry. Our findings are helpful in designing relevant quantum devices and understanding the influence of edge disorder on the stability of electron periodic oscillations in 2D coupled systems.
Scene semantics affects allocentric spatial coding for action in naturalistic (virtual) environments
Authors: Baltaretu Bianca R. , Schuetz Immo , Võ Melissa L.-H. , Fiehler Katja 
Published: July 2024

AbstractInteracting with objects in our environment requires determining their locations, often with respect to surrounding objects (i.e., allocentrically). According to the scene grammar framework, these usually small, local objects are movable within a scene and represent the lowest level of a scene’s hierarchy. How do higher hierarchical levels of scene grammar influence allocentric coding for memory-guided actions? Here, we focused on the effect of large, immovable objects (anchors) on the encoding of local object positions. In a virtual reality study, participants (n = 30) viewed one of four possible scenes (two kitchens or two bathrooms), with two anchors connected by a shelf, onto which were presented three local objects (congruent with one anchor) (Encoding). The scene was re-presented (Test) with 1) local objects missing and 2) one of the anchors shifted (Shift) or not (No shift). Participants, then, saw a floating local object (target), which they grabbed and placed back on the shelf in its remembered position (Response). Eye-tracking data revealed that both local objects and anchors were fixated, with preference for local objects. Additionally, anchors guided allocentric coding of local objects, despite being task-irrelevant. Overall, anchors implicitly influence spatial coding of local object locations for memory-guided actions within naturalistic (virtual) environments.
A new 915 MHz coaxial-line-based microwave plasma source
Authors: Miotk Robert , Mizeraczyk Jerzy , Jasiński Mariusz 
Published: July 2024

AbstractMicrowave plasma is known for its versatility in providing tailored operating conditions (pressure, working gas composition and residence time of reagents) for specific applications. Microwave plasma sources (MPSs) are vital in modern applications, demanding continuous improvement. This work introduces a coaxial-line-based nozzleless MPS that operates at atmospheric pressure at an unique frequency of 915 MHz. The measured electrodynamic characteristics in nitrogen of the MPS highlighted the need for improved energy efficiency of the device. The main novelty of this work lies in improving an energy efficiency of the presented MPS, which led to an advanced new version of the device. To achieve this, a dual strategy is employed. Firstly, numerical simulations are used to design a construction modifications to the MPS, which should increase the efficiency of transferring microwave energy from the microwave source to the generated plasma. In this step, a standard model for homogeneous plasma and a two-port equivalent method were used. Then, the theoretical results were experimentally validated by manufacturing a new energy improved version of the MPS. In the new MPS the achieved reflected microwave power (losses) was less than 3% of incident microwave power in the tested range of nitrogen flow rate (50–100 Nl/min). Compared to the MPS before improvement, this means a two-fold decreasing the reflected microwave power. To test the new MPS, the electrodynamic characteristics of the new device version and properties of the microwave plasma generated in nitrogen, using optical emission spectroscopy (OES), were investigated. The OES was used to determine the vibrational Tvib and rotational Trot temperatures of nitrogen molecules and molecular ions. In this work, the estimated Tvib and Trot temperatures for nitrogen molecules ranged from 4000 to 5300 K, depending on discharge conditions, while for nitrogen molecular ions, the temperatures changed between 4700 and 6100 K, respectively. Both the Tvib and Trot temperatures decrease linearly along the plasma flame.
Clinical and microbiological characteristics of persistent Staphylococcus aureus bacteremia, risk factors for mortality, and the role of CD4+ T cells
Authors: Yang Eunmi , Cho Yeong Geon , Kim Eunsil , Chang Euijin , Bae Seongman , Jung Jiwon , Kim Min Jae , Chong Yong Pil , Kim Sung-Han , Choi Sang-Ho , Lee Sang-Oh , Chung Yun Shin , Kim Yang Soo 
Published: July 2024

AbstractThis study evaluated the determinants of mortality and the T cell immune response in patients with persistent Staphylococcus aureus bacteremia (SAB). This was a prospective cohort study and patients with confirmed SAB were enrolled from 2008 to 2020. We compared clinical, microbiological, and genotypic features between surviving and deceased patients with persistent SAB. The concentrations of cytokines and the proportions of IFN-γ secreting CD4+ T cells were measured serially during the bacteremia period. Of the 1760 patients, 242 had persistent bacteremia (PB), and 49 PB patients died within 30 days. In the multivariate analysis, the APACHE II score and female sex were independently associated with 30 days mortality. The level of IL-10 was significantly increased in the plasma of patients with a high Pitt bacteremia score and those who died within 12 weeks from the index day. The proportion of IFN-γ-secreting CD4+ T cells were the highest just before the positive-to-negative conversion of blood cultures in patients with a low Pitt bacteremia score and those who survived for 12 weeks. The level of IL-10 is correlated with clinical outcomes in PB patients. IFN-γ secreting CD4+ T cells might play a pivotal role in SAB PB.
Time-course study of genetic changes in periodontal ligament regeneration after tooth replantation in a mouse model
Authors: Ohshima Jun , Abe Shotaro , Morita Masayoshi , Tanaka Nobutake , Yamaguchi Masaya , Hayashi Mikako 
Published: July 2024

AbstractThis research focused on analyzing gene expression changes in the periodontal ligament (PDL) after tooth re-plantation to identify key genes and pathways involved in healing and regeneration. Utilizing a mouse model, mRNA was extracted from the PDL at various intervals post-replantation for RNA sequencing analysis, spanning from 3 to 56 days. The results revealed significant shifts in gene expression, particularly notable on day 28, supported by hierarchical clustering and principal component analysis. Gene ontology (GO) enrichment analysis highlighted an upregulation in olfactory receptor and G protein-coupled receptor signaling pathways at this time point. These findings were validated through reverse transcription-quantitative PCR (RT-qPCR), with immunochemical staining localizing olfactory receptor gene expression to the PDL and surrounding tissues. Moreover, a scratch assay indicated that olfactory receptor genes might facilitate wound healing in human PDL fibroblasts. These results underscore the importance of the 28-day post-transplant phase as a potential “tipping point” in PDL healing and regeneration. In conclusion, this research sheds light on the potential role of olfactory receptor genes in PDL regeneration, providing a foundation for developing new therapeutic approaches in tooth replantation and transplantation, with broader implications for regenerative medicine in oral health.
Unlocking the potential of biofilm-forming plant growth-promoting rhizobacteria for growth and yield enhancement in wheat (Triticum aestivum L.)
Authors: Rafique Munazza , Naveed Muhammad , Mumtaz Muhammad Zahid , Niaz Abid , Alamri Saud , Siddiqui Manzer H. , Waheed Muhammad Qandeel , Ali Zulfiqar , Naman Abdul , Rehman Sajid ur , Brtnicky Martin , Mustafa Adnan 
Published: July 2024

AbstractPlant growth-promoting rhizobacteria (PGPR) boost crop yields and reduce environmental pressures through biofilm formation in natural climates. Recently, biofilm-based root colonization by these microorganisms has emerged as a promising strategy for agricultural enhancement. The current work aims to characterize biofilm-forming rhizobacteria for wheat growth and yield enhancement. For this, native rhizobacteria were isolated from the wheat rhizosphere and ten isolates were characterized for plant growth promoting traits and biofilm production under axenic conditions. Among these ten isolates, five were identified as potential biofilm-producing PGPR based on in vitro assays for plant growth-promoting traits. These were further evaluated under controlled and field conditions for their impact on wheat growth and yield attributes. Surface-enhanced Raman spectroscopy analysis further indicated that the biochemical composition of the biofilm produced by the selected bacterial strains includes proteins, carbohydrates, lipids, amino acids, and nucleic acids (DNA/RNA). Inoculated plants in growth chamber resulted in larger roots, shoots, and increase in fresh biomass than controls. Similarly, significant increases in plant height (13.3, 16.7%), grain yield (29.6, 17.5%), number of tillers (18.7, 34.8%), nitrogen content (58.8, 48.1%), and phosphorus content (63.0, 51.0%) in grains were observed in both pot and field trials, respectively. The two most promising biofilm-producing isolates were identified through 16 s rRNA partial gene sequencing as Brucella sp. (BF10), Lysinibacillus macroides (BF15). Moreover, leaf pigmentation and relative water contents were significantly increased in all treated plants. Taken together, our results revealed that biofilm forming PGPR can boost crop productivity by enhancing growth and physiological responses and thus aid in sustainable agriculture.
Change of El Niño onset location around 1970
Authors: Pan Xiao , Li Tim , Yu Jinhua 
Published: July 2024

AbstractA shift of El Niño onset location from eastern Pacific (EP) to western Pacific (WP) occurred around 1970. It was accompanied by a faster mean sea surface temperature (SST) warming in WP and a change of precursory SST and wind anomaly patterns. The eigenvalue analysis of a simple coupled model shows that an SST anomaly (SSTA) in WP may grow under the post-1970 mean condition but cannot under the pre-1970 mean condition. As a result, a warm SSTA appeared in WP accompanying to a preceding La Niña condition in EP after 1970, whereas such a warming was rarely seen before 1970. The preceding SSTA patterns led to distinctive zonal wind responses in EP, favoring El Niño onset in EP prior to 1970. For the post-1970 El Niño onset, an initial warming in WP was induced by anomalous downward solar radiation in association with atmospheric meridional overturning circulation or anomalous horizontal advection associated with thermocline induced eastward geostrophic currents.