bluuebunny/crossref_metadata_2025_split huggingface dataset:
Prehospital anaesthesia performed by physician/critical care paramedic teams in a major trauma network in the UK: a 12 month review of practice
Authors: McQueen Carl , Crombie Nicholas , Hulme Jonathan , Cormack Stef , Hussain Nageena , Ludwig Frank , Wheaton Steve 
Published: October 2013

IntroductionIn the West Midlands region of the UK, delivery of pre-hospital care has been remodelled through introduction of a 24 h Medical Emergency Response Incident Team (MERIT). Teams including physicians and critical care paramedics (CCP) are deployed to incidents on land-based and helicopter-based platforms. Clinical practice, including delivery of rapid sequence induction of anaesthesia (RSI), is underpinned by standard operating procedures (SOP). This study describes the first 12 months experience of prehospital RSI in the MERIT scheme in the West Midlands.MethodsRetrospective review of the MERIT clinical database for the 12 months following the launch of the scheme. Data was collected relating to the number of RSIs performed; indication for RSI; number of intubation attempts; grade of view on laryngoscopy and the base speciality/grade of the operator performing intubation.ResultsMERIT teams were activated 1619 times, attending scene in 1029 cases. RSI was performed 142 times (13.80% of scene attendances). There was one recorded case of failure to intubate requiring insertion of a supraglottic airway device (0.70%). In over a third of RSI cases, CCPs performed laryngoscopy and intubation (n=53, 37.32%). Proficiency of obtaining Grade I view at laryngoscopy was similar for physicians (74.70%) and CCPs (77.36%). Intubation was successful at the first attempt in over 90% of cases.ConclusionsThis study demonstrates that operation within a system that provides high levels of exposure, underpinned by comprehensive and robust training and governance frameworks, promotes levels of performance in successful prehospital RSI regardless of base speciality or profession.
Pressure–temperature evolution of a kyanite–garnet pelitic gneiss from Åreskutan: evidence of ultra-high-pressure metamorphism of the Seve Nappe Complex, west-central Jämtland, Swedish Caledonides
Authors: Klonowska Iwona , Majka Jarosław , Janák Marian , Gee David G. , Ladenberger Anna 
Published: October 2013

Abstract

New evidence is presented for ultra-high-pressure metamorphism of kyanite–garnet pelitic gneiss in the Åreskutan Nappe of the Seve Nappe Complex, in the central part of the Scandinavian Caledonides. Modelled phase equilibria for a peak pressure assemblage garnet+phengite+kyanite+quartz (coesite) in the NCKFMMnASH system record pressure and temperature conditions of
c.
26–32 kbar at 700–720 °C, possibly up to ultra-high-pressure conditions. Subsequent decompression, simultaneous with an increase of temperature to
c.
800–820 °C, led to partial melting largely owing to the dehydration and breakdown of phengite. Based on existing isotope age data, we conclude that the Middle Seve Nappe in central Jämtland experienced deep subduction in the late(st) Ordovician, prior to decompression and partial melting of the pelitic protoliths during Early Silurian extrusion, giving way in the Mid to Late Silurian to thrusting on to the Baltoscandian platform. Nappe emplacement probably continued into and through the Early Devonian.
Seasonal patterns of male affiliation in ring-tailed lemurs (Lemur catta) in diverse habitats across southern Madagascar
Authors: Gabriel Denise N. , Gould Lisa , Kelley Elizabeth A. 
Published: October 2013

We examined the mechanisms guiding male affiliative relationships among ring-tailed lemurs (Lemur catta) to investigate the adaptive significance of male social bonds in a female dominant, strictly seasonally breeding strepsirhine primate. To test whether male affiliative relationships were driven by reproductive and/or ecological conditions, we compared the frequency of male affiliation across the annual reproductive cycle in populations of L. catta inhabiting three habitat types found within its geographic range: (1) gallery forest at Beza Mahafaly Special Reserve in southwestern Madagascar; (2) spiny bush at Cap Sainte-Marie (CSM) in southern Madagascar; and (3) rocky-outcrop forest fragments at Anja Reserve and the Tsaranoro Valley in Madagascar’s south-central highlands. Each study period spanned the gestation, lactation/migration, post-migration, and mating periods. Inter-male affiliation rates varied across reproductive periods at each of the four sites, with the highest frequencies being observed during the gestation and lactation/migration periods and the lowest frequencies occurring during the mating period. In contrast, we found no clear patterns in male–female affiliation rates with respect to reproductive period. Comparing the Beza Mahafaly and CSM populations, rates of inter-male affiliation were higher at CSM during the gestation and lactation/migration periods, and rates male–female affiliation were higher at CSM across all seasons except the post-migration period. We suggest that inter-male affiliative relationships in L. catta may provide beneficial social interactions (i.e., grooming, ectoparasite control, predator protection, vigilance against extra-group male agonism) when females are unavailable, particularly during male dispersal, as well as under harsh climatic conditions characteristic of some L. catta habitats.
Trace metal contents in male, non-ovigerous and ovigerous females, and the egg sacs of the marine copepod, Euchaeta concinna Dana, 1849 (Copepoda, Euchaetidae), collected from the southern East China Sea
Authors: Hsiao Shih-Hui , Fang Tien-Hsi 
Published: October 2013

Marine copepods have a great ability to accumulate trace metals from seawater. The trace metal content in marine copepods may vary both intra- and inter-specifically. However, the known specific trace metal content of the copepod sexes and according to the ovigerous status of the females is very limited. Copepod samples of Euchaeta concinna Dana, 1849, were collected from the southern East China Sea and separated into four groups: males; non-ovigerous females; ovigerous females without egg sacs, and egg sacs, in order to analyse the trace metal contents (Cd, Cr, Cu, Fe, Mn, Ni, Pb and Zn) in these samples. These trace metal contents were found to range between 0.04 and 195.7 μg/g. Zinc, Fe, and Cu were the major components among the trace metals studied and their concentrations generally exceeded 10 μg/g. The trace metal contents in the copepod body generally exceeded the amount in the egg sacs. However, the Cr concentration in the egg sacs was much higher than that in the copepod body, either male or female, and the value ranked as second just behind Zn among the metals studied. The nickel content was also slightly higher in the egg sacs. This study provides the important finding that E. concinna egg sacs contained Cr concentrations out of all proportions to that of the copepod body. Yet, why E. concinna egg sacs contain relatively higher Cr concentrations than the body remains a question to be answered.
Factors Controlling Rapid Stratocumulus Cloud Thinning
Authors: van der Dussen J. J. , de Roode S. R. , Siebesma A. P. 
Published: October 2013

Abstract
The relationship between the inversion stability and the liquid water path (LWP) tendency of a vertically well-mixed, adiabatic stratocumulus cloud layer is investigated in this study through the analysis of the budget equation for the LWP. The LWP budget is mainly determined by the turbulent fluxes of heat and moisture at the top and the base of the cloud layer, as well as by the source terms due to radiation and precipitation. Through substitution of the inversion stability parameter κ into the budget equation, it immediately follows that the LWP tendency will become negative for increasing values of κ due to the entrainment of increasingly dry air. Large κ values are therefore associated with strong cloud thinning. Using the steady-state solution for the LWP, an equilibrium value κeq is formulated, beyond which the stratocumulus cloud will thin. The Second Dynamics and Chemistry of Marine Stratocumulus field study (DYCOMS-II) is used to illustrate that, depending mainly on the magnitude of the moisture flux at cloud base, stratocumulus clouds can persist well within the buoyancy reversal regime.
Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology
Authors: Ruan Jue , Jiang Lan , Chong Zechen , Gong Qiang , Li Heng , Li Chunyan , Tao Yong , Zheng Caihong , Zhai Weiwei , Turissini David , Cannon Charles H , Lu Xuemei , Wu Chung-I 
Published: October 2013

Abstract

Background
Usually, next generation sequencing (NGS) technology has the property of ultra-high throughput but the read length is remarkably short compared to conventional Sanger sequencing. Paired-end NGS could computationally extend the read length but with a lot of practical inconvenience because of the inherent gaps. Now that Illumina paired-end sequencing has the ability of read both ends from 600 bp or even 800 bp DNA fragments, how to fill in the gaps between paired ends to produce accurate long reads is intriguing but challenging.

Results
We have developed a new technology, referred to as pseudo-Sanger (PS) sequencing. It tries to fill in the gaps between paired ends and could generate near error-free sequences equivalent to the conventional Sanger reads in length but with the high throughput of the Next Generation Sequencing. The major novelty of PS method lies on that the gap filling is based on local assembly of paired-end reads which have overlaps with at either end. Thus, we are able to fill in the gaps in repetitive genomic region correctly. The PS sequencing starts with short reads from NGS platforms, using a series of paired-end libraries of stepwise decreasing insert sizes. A computational method is introduced to transform these special paired-end reads into long and near error-free PS sequences, which correspond in length to those with the largest insert sizes. The PS construction has 3 advantages over untransformed reads: gap filling, error correction and heterozygote tolerance. Among the many applications of the PS construction is de novo genome assembly, which we tested in this study. Assembly of PS reads from a non-isogenic strain of Drosophila melanogaster yields an N50 contig of 190 kb, a 5 fold improvement over the existing de novo assembly methods and a 3 fold advantage over the assembly of long reads from 454 sequencing.

Conclusions
Our method generated near error-free long reads from NGS paired-end sequencing. We demonstrated that de novo assembly could benefit a lot from these Sanger-like reads. Besides, the characteristic of the long reads could be applied to such applications as structural variations detection and metagenomics.
Production of reactive oxygen species and wound-induced resistance in Arabidopsis thaliana against Botrytis cinereaare preceded and depend on a burst of calcium
Authors: Beneloujaephajri Emna , Costa Alex , L’Haridon Floriane , Métraux Jean-Pierre , Binda Matteo 
Published: October 2013

Abstract

Background
Wounded leaves of Arabidopsis thaliana produce reactive oxygen species (ROS) within minutes after wounding and become resistant to the pathogenic fungus Botrytis cinerea at a local level. This fast response of the plants to the wound is called wound-induced resistance (WIR). However the molecular mechanisms of this response and the signal cascade between the wound and ROS production are still largely unknown. Calcium is a conserved signal and it is involved in many abiotic stress responses in plants, furthermore, calcium pathways act very fast.

Results
The results of this study show that leaves treated with calcium channels inhibitors (verapamil) or calcium chelators (oxalate and EGTA) are impaired in ROS production. Moreover, leaves treated with verapamil, EGTA or oxalate were more susceptible to B. cinerea after wounding. The intracellular measurements of calcium changes indicated quick but transient calcium dynamics taking place few seconds after wounding in cells neighbouring the wound site. This change in the cytosolic calcium was followed in the same region by a more stable ROS burst.

Conclusions
These data further extend our knowledge on the connection between wounding, calcium influx and ROS production. Moreover they provide for the first time the evidence that, following wounding, calcium changes precede a burst in ROS in the same location.
Long-term dominance of Mycobacterium tuberculosisUganda family in peri-urban Kampala-Uganda is not associated with cavitary disease
Authors: Wampande Eddie M , Mupere Ezekiel , Debanne Sara M , Asiimwe Benon B , Nsereko Mary , Mayanja Harriet , Eisenach Kathleen , Kaplan Gilla , Boom Henry W , Gagneux Sebastien , Joloba Moses L 
Published: October 2013

AbstractBackgroundPrevious studies have shown thatMycobacterium tuberculosis(MTB) Uganda family, a sub-lineage of the MTB Lineage 4, is the main cause of tuberculosis (TB) in Uganda. Using a well characterized patient population, this study sought to determine whether there are clinical and patient characteristics associated with the success of the MTB Uganda family in Kampala.MethodsA total of 1,746 MTB clinical isolates collected from1992-2009 in a household contact study were genotyped. Genotyping was performed using Single Nucleotide Polymorphic (SNP) markers specific for the MTB Uganda family, other Lineage 4 strains, and Lineage 3, respectively. Out of 1,746 isolates, 1,213 were from patients with detailed clinical data. These data were used to seek associations between MTB lineage/sub-lineage and patient phenotypes.ResultsThree MTB lineages were found to dominate the MTB population in Kampala during the last two decades. Overall, MTB Uganda accounted for 63% (1,092/1,746) of all cases, followed by other Lineage 4 strains accounting for 22% (394/1,746), and Lineage 3 for 11% (187/1,746) of cases, respectively. Seventy-three (4 %) strains remained unclassified. Our longitudinal data showed that MTB Uganda family occurred at the highest frequency during the whole study period, followed by other Lineage 4 strains and Lineage 3. To explore whether the long-term success of MTB Uganda family was due to increased virulence, we used cavitary disease as a proxy, as this form of TB is the most transmissible. Multivariate analysis revealed that even though cavitary disease was associated with known risk factors such as smoking (adjusted odds ratio (aOR) 4.8, 95% confidence interval (CI) 3.33-6.84) and low income (aOR 2.1, 95% CI 1.47-3.01), no association was found between MTB lineage and cavitary TB.ConclusionThe MTB Uganda family has been dominating in Kampala for the last 18 years, but this long-term success is not due to increased virulence as defined by cavitary disease.
Efficacy and safety of lanthanum carbonate on chronic kidney disease–mineral and bone disorder in dialysis patients: a systematic review
Authors: Zhang Chenglong , Wen Ji , Li Zi , Fan Junming 
Published: October 2013

Abstract

Background
Chronic kidney disease–mineral and bone disorder (CKD–MBD) is a common complication in CKD patients, particularly in those with end-stage renal disease that requires dialysis. Lanthanum carbonate (LC) is a potent, non-aluminum, non-calcium phosphate binder. This systematic review evaluates the efficacy and safety of LC in CKD-MBD treatment for maintenance-dialysis patients.

Methods
A systematic review and meta-analysis on randomized controlled trials (RCTs) and quasi-RCTs was performed to assess the efficacy and safety of LC in maintenance hemodialysis or peritoneal dialysis patients. Analysis was performed using the statistical software Review Manager 5.1.

Results
Sixteen RCTs involving 3789 patients were identified and retained for this review. No statistical difference was found in all-cause mortality. The limited number of trials was insufficient to show the superiority of LC over other treatments in lowering vascular calcification or cardiovascular events and in improving bone morphology, bone metabolism, or bone turn-over parameters. LC decreased the serum phosphorus level and calcium × phosphate product (Ca × P) as compared to placebo. LC, calcium carbonate (CC), and sevelamer hydrochloride (SH) were comparable in terms of controlling the serum phosphorus, Ca × P product, and intact parathyroid hormone (iPTH) levels. However, LC resulted in a lower serum calcium level and a higher bone-specific alkaline phosphatase level compared with CC. LC had higher total cholesterol and low-density lipoprotein (LDL) cholesterol levels compared with SH. LC-treated patients appeared to have a higher rate of vomiting and lower risk of hypercalcemia, diarrhea, intradialytic hypotension, cramps or myalgia, and abdominal pain. Meta-analysis showed no significant difference in the incidence of other side effects. Accumulation of LC in blood and bone was below toxic levels.

Conclusions
LC has high efficacy in lowering serum phosphorus and iPTH levels without increasing the serum calcium. Current evidence does not show a higher rate of adverse effects for LC compared with other treatments, except for a higher incidence of vomiting. Moreover, LC accumulation in blood and bone was below toxic levels. Well-designed studies should be conducted to evaluate the long-term effects of LC.
Arg972 Insulin receptor substrate-1 is associated with decreased serum angiotensin-converting enzyme 2 levels in acute myocardial infarction patients: in vivo and in vitro evidence
Authors: Liu Wei , Zhou Xinmin , Yu Fenglei , Hu Jianguo , Hu Wen 
Published: October 2013

Abstract

Background
Activation of the renin-angiotensin system (RAS) plays a critical role in the pathophysiology of myocardial infarction (MI) and the development of heart failure. Both angiotensin-converting enzyme 2 (ACE2) and insulin/insulin receptor substrate-1 (IRS-1) show cardioprotective effects after acute MI. The Arg972 IRS-1 polymorphism is associated with diminished activity of insulin. In the present study, we explored the association among Arg972 IRS-1, acute MI, and serum levels of ACE2.

Methods
A total of 711 subjects, including 351 subjects with first-time acute MI and 360 subjects without a history of MI were genotyped for Arg972 IRS-1 polymorphism. Serum levels of ACE2 and MI severity scores were determined. Primary human cardiomyocytes with overexpression of wild type IRS-1 or Arg972 IRS-1 or knockdown of endogenous IRS-1 were exposed to normoxia and hypoxia, and the expression levels of ACE2 were determined.

Results
The serum ACE2 level was significantly increased in acute MI patients compared with that of non-MI controls. Compared with wild type IRS-1 carriers, Arg972 IRS-1 carriers exhibited decreased serum ACE2 levels and increased MI severity scores after MI. Our in vitro data demonstrate that impairment of insulin/IRS-1/PI3K signaling by overexpression of Arg972-IRS-1, knockdown of endogenous IRS-1, or PI3K inhibitor can abolish hypoxia-induced IRS-1-associated PI3K activity and ACE2 expression in human cardiomyocytes, which suggests a causal relationship between Arg972-IRS-1 and decreased serum ACE2 levels in acute MI patients. Our in vitro data also indicate that insulin/IRS-1/PI3K signaling is required for ACE2 expression in cardiomyocytes, and that hypoxia can enhance the induction effect of insulin/IRS-1/PI3K signaling on ACE2 expression in cardiomyocytes.

Conclusions
This study provides the first evidence of crosstalk between insulin/IRS-1/PI3K signaling and RAS after acute MI, thereby adding fresh insights into the pathophysiology and treatment of acute MI.
Synthesis of cobalt nanoparticles on Si (100) by swift heavy ion irradiation
Authors: Attri Asha , Kumar Ajit , Verma Shammi , Ojha Sunil , Asokan Kandasami , Nair Lekha 
Published: October 2013

Abstract
We report the growth and characterization of uniform-sized nanoparticles of cobalt on n-type silicon (100) substrates by swift heavy ion (SHI) irradiation. The Co thin films of 25-nm thicknesses were grown by e-beam evaporation and irradiated with two different types of ions, 45-MeV Li3+ and 100-MeV O7+ ions with fluences ranging from 1 × 1011 to 1 × 1013 ions/cm2. SHI irradiation, with the beam rastered over the area of the film, resulted in the restructuring of the film into a dense array of Co nanostructures. Surface topography studied by atomic force microscopy revealed narrowed size distributions, with particle sizes ranging from 20 to 50 nm, formed through a self-organized process. Ion fluence-dependent changes in crystallinity of the Co nanostructures were determined by glancing angle X-ray diffraction. Rutherford backscattering spectroscopy analysis showed the absence of beam-induced mixing in this system. Surface restructuring and beam-induced crystallization are the dominant effects, with the nanoparticle size and density being dependent on the ion fluence. Results are analyzed in the context of molecular dynamics calculations of electron-lattice energy transfer.
Computer-aided diagnosis for diagnostically challenging breast lesions in DCE-MRI based on image registration and integration of morphologic and dynamic characteristics
Authors: Retter Felix , Plant Claudia , Burgeth Bernhard , Botella Guillermo , Schlossbauer Thomas , Meyer-Bäse Anke 
Published: October 2013

Abstract
Diagnostically challenging lesions comprise both foci (small lesions) and non-mass-like enhancing lesions and pose a challenge to current computer-aided diagnosis systems. Motion-based artifacts lead in dynamic contrast-enhanced breast magnetic resonance to diagnostic misinterpretation; therefore, motion compensation represents an important prerequisite to automatic lesion detection and diagnosis. In addition, the extraction of pertinent kinetic and morphologic features as lesion descriptors is an equally important task. In the present paper, we evaluate the performance of a computer-aided diagnosis system consisting of motion correction, lesion segmentation, and feature extraction and classification. We develop a new feature extractor, the radial Krawtchouk moment, which guarantees rotation invariance. Many novel feature extraction techniques are proposed and tested in conjunction with lesion detection. Our simulation results have shown that motion compensation combined with Minkowski functionals and Bayesian classifier can improve lesion detection and classification.