bluuebunny/crossref_metadata_2025_split huggingface dataset:
A Highly Responsive Silicon Nanowire/Amplifier MOSFET Hybrid Biosensor
Authors: Lee Jieun , Jang Jaeman , Choi Bongsik , Yoon Jinsu , Kim Jee-Yeon , Choi Yang-Kyu , Myong Kim Dong , Hwan Kim Dae , Choi Sung-Jin 
Published: July 2015

AbstractThis study demonstrates a hybrid biosensor comprised of a silicon nanowire (SiNW) integrated with an amplifier MOSFET to improve the current response of field-effect-transistor (FET)-based biosensors. The hybrid biosensor is fabricated using conventional CMOS technology, which has the potential advantage of high density and low noise performance. The biosensor shows a current response of 5.74 decades per pH for pH detection, which is 2.5 × 105 times larger than that of a single SiNW sensor. In addition, we demonstrate charged polymer detection using the biosensor, with a high current change of 4.5 × 105 with a 500 nM concentration of poly(allylamine hydrochloride). In addition, we demonstrate a wide dynamic range can be obtained by adjusting the liquid gate voltage. We expect that this biosensor will be advantageous and practical for biosensor applications which requires lower noise, high speed and high density.
Hyperosmotic stress activates the expression of members of the miR-15/107 family and induces downregulation of anti-apoptotic genes in rat liver
Authors: Santosa David , Castoldi Mirco , Paluschinski Martha , Sommerfeld Annika , Häussinger Dieter 
Published: July 2015

AbstractmicroRNAs are an abundant class of small non-coding RNAs that negatively regulate gene expression. Importantly, microRNA activity has been linked to the control of cellular stress response. In the present study, we investigated whether the expression of hepatic microRNAs is affected by changes in ambient osmolarity. It is shown that hyperosmotic exposure of perfused rat liver induces a rapid upregulation of miR-15a, miR-15b and miR-16, which are members of the miR-15/107 microRNAs superfamily. It was also identified that hyperosmolarity significantly reduces the expression of anti-apoptotic genes including Bcl2, Ccnd1, Mcl1, Faim, Aatf, Bfar and Ikbkb, which are either validated or predicted targets of these microRNAs. Moreover, through the application of NOX and JNK inhibitors as well as benzylamine it is shown that the observed response is mediated by reactive oxygen species (ROS), suggesting that miR-15a, miR-15b and miR-16 are novel redoximiRs. It is concluded that the response of these three microRNAs to osmotic stress is ROS-mediated and that it might contribute to the development of a proapoptotic phenotype.
Genome-wide uniparental disomy screen in human discarded morphologically abnormal embryos
Authors: Xu Jiawei , Zhang Meixiang , Niu Wenbin , Yao Guidong , Sun Bo , Bao Xiao , Wang Linlin , Du Linqing , Sun Yingpu 
Published: July 2015

AbstractUniparental disomy (UPD) has been shown to be rare in human normal blastocysts, but its frequency in discarded morphologically abnormal embryos and its relevance to embryonic self-correction of aneuploid remains unknown. The aim of this study was to detect UPD in discarded morphologically abnormal embryos. Both discarded morphologically abnormal embryos, including zero-pronuclear zygotes (0PN), one-pronuclear zygotes (1PN), three-pronuclear zygotes (3PN) and 2PN embryos scored as low development potential were cultured into blastocysts then underwent trophectoderm biopsy. Genome-wide UPD screening of the trophectoderm of 241 discarded morphologically abnormal embryo sourced blastocysts showed that UPD occurred in nine embryos. Five embryos exhibited UPDs with euploid chromosomes and four displayed UPDs with chromosomal aneuploid. The percentage of UPDs among the morphologically abnormal sourced blastocysts was 3.73%, which is significant higher than the percentage observed in normal blastocysts. The frequency of UPD in 3PN-sourced blastocysts was 7.69%, which is significantly higher than that in normal blastocysts. This study provides the first systematic genome-wide profile of UPD in discarded morphologically abnormal embryos. Our results indicated that UPD may be a common phenomenon in discarded morphologically abnormal embryos and may be relevant to human embryonic self-correction.
Ultra-broadband and high-responsive photodetectors based on bismuth film at room temperature
Authors: Yao J. D. , Shao J. M. , Yang G. W. 
Published: July 2015

AbstractBismuth (Bi) has undergone researches for dozens of years on account of its abundant physics including the remarkably high mobility, exceptional large positive magnetoresistance and the coexistence of an insulating interior as well as metallic surfaces. Very recently, two-dimensional topologically-protected surface states immune to nonmagnetic perturbation such as surface oxidation and impurity scattering were experimentally demonstrated through systematic magnetotransport measurements, e.g. weak antilocalization effect and angular dependent Shubnikov-de Haas oscillations. Such robust metallic surface states, which are efficient in carrier transportation, along with its small bulk gap (14 meV) make Bi favored for high-responsive broadband photodetection. Here, we for the first time demonstrate the stable ultra-broadband photoresponse from 370 nm to 1550 nm with good reproducibility at room temperature based on a Bi photodetector. The fabricated device’s responsivity approaches 250 mA/W, accompanied with a rise time of 0.9 s and a decay time of 1.9 s. The photocurrent is linear dependent on the voltage and incident power, offering good tunability for multi-purpose applications. Thickness-dependent conductance and photocurrent reveal that the bulk is the optically active layer while the surface channel is responsible for carrier transportation. These findings pave an avenue to develop ultra-broadband Bi photodetectors for the next-generation multifunctional optoelectronic devices.
Label Propagation Prediction of Drug-Drug Interactions Based on Clinical Side Effects
Authors: Zhang Ping , Wang Fei , Hu Jianying , Sorrentino Robert 
Published: July 2015

AbstractDrug-drug interaction (DDI) is an important topic for public health and thus attracts attention from both academia and industry. Here we hypothesize that clinical side effects (SEs) provide a human phenotypic profile and can be translated into the development of computational models for predicting adverse DDIs. We propose an integrative label propagation framework to predict DDIs by integrating SEs extracted from package inserts of prescription drugs, SEs extracted from FDA Adverse Event Reporting System and chemical structures from PubChem. Experimental results based on hold-out validation demonstrated the effectiveness of the proposed algorithm. In addition, the new algorithm also ranked drug information sources based on their contributions to the prediction, thus not only confirming that SEs are important features for DDI prediction but also paving the way for building more reliable DDI prediction models by prioritizing multiple data sources. By applying the proposed algorithm to 1,626 small-molecule drugs which have one or more SE profiles, we obtained 145,068 predicted DDIs. The predicted DDIs will help clinicians to avoid hazardous drug interactions in their prescriptions and will aid pharmaceutical companies to design large-scale clinical trial by assessing potentially hazardous drug combinations. All data sets and predicted DDIs are available at http://astro.temple.edu/~tua87106/ddi.html.
Anti-inflammatory Effects of Perioperative Dexmedetomidine Administered as an Adjunct to General Anesthesia: A Meta-analysis
Authors: Li Bo , Li Yalan , Tian Shushi , Wang Huixia , Wu Hui , Zhang Aihua , Gao Chengjie 
Published: July 2015

AbstractThe aim of this meta-analysis is to examine the effects of dexmedetomidine on serum inflammatory markers when administered perioperatively. We searched multiple electronic databases for relevant research papers and carried out meta-analyses of weighted mean differences and interpreted in the light of statistical heterogeneity (I2). Fifteen RCTs recruiting 641 patients were included. Dexmedetomidine treatment significantly decreased interleukin-6 (IL-6), IL-8 and tumor necrosis factor-alpha (TNF-α) levels with mean differences [95% CI] in the changes from baseline between dexmedetomidine treated and controls of −25.14 [−35.29, −15.00]; P < 0.00001 (for IL-6), −5.69 [−10.77, −0.60]; P < 0.04 (for IL-8) and −20.30 [−30.93, −9.67]; P < 0.0002 (for TNF-α) immediately after surgery; and −41.55 [−57.41, −25.70]; P < 0.00001 (IL-6), −6.46 [−10.83, −2.08]; P < 0.005 (IL-8) and −14.67 [−22.61, −6.73]; P < 0.0003 (TNF-α) on postoperative day 1 (random effects). IL-10 levels were found to increase significantly a day after surgery (8.33 [3.31, 13.36]; P = 0.001). Subgroup analyses did not reveal significant differences. In conclusion, perioperative adjunctive use of dexmedetomidine substantially decreases serum IL-6, IL-8 and TNF-α levels.
Prediction of spontaneous closure of traumatic macular hole with spectral domain optical coherence tomography
Authors: Chen Haoyu , Chen Weiqi , Zheng Kangken , Peng Kun , Xia Honghe , Zhu Lei 
Published: July 2015

AbstractIt has been known that some traumatic macular holes can close spontaneously. However, knowledge about the types of macular hole that can close spontaneously is limited. In this retrospective study, we investigated patients with traumatic macular hole who were followed-up for at least 6 months without any surgical intervention. Clinical data and spectral domain optical coherence tomography (SD-OCT) images were compared between groups with and without macular hole closure. Overall, 27 eyes were included. Spontaneous closure of macular hole was observed in 10 (37.0%) eyes. The holes with spontaneous closure had smaller minimum diameter (244.9 ± 114.4 vs. 523.9 ± 320.0 μm, p = 0.007) and less intraretinal cysts (10% vs. 76.5%, p = 0.001) compared to the holes that did not close spontaneously. The area under the curve of receiver operative characteristic was 0.812 and 0.832 for minimum diameter of macular hole and presence of intraretinal cysts respectively. Multivariate logistic regression showed that the presence of intraretinal cysts was an independent predictive factor for closure of macular holes. The group with spontaneous macular hole closure had a high chance of visual improvement. Our study suggests that the absence of intraretinal cysts on SD-OCT can predict spontaneous closure of traumatic macular hole.
Host-Guest Carbon Dots for Enhanced Optical Properties and Beyond
Authors: Sun Ya-Ping , Wang Ping , Lu Zhuomin , Yang Fan , Meziani Mohammed J. , LeCroy Gregory E. , Liu Yun , Qian Haijun 
Published: July 2015

AbstractCarbon dots, generally small carbon nanoparticles with various forms of surface passivation, have achieved the performance level of semiconductor quantum dots in the green spectral region, but their absorption and fluorescence in red/near-IR are relatively weaker. Conceptually similar to endofullerenes, host-guest carbon dots were designed and prepared with red/near-IR dyes encapsulated as guest in the carbon nanoparticle core. Beyond the desired enhancement in optical properties, the host-guest configuration may significantly broaden the field of carbon dots.
Suppression of Poly(rC)-Binding Protein 4 (PCBP4) reduced cisplatin resistance in human maxillary cancer cells
Authors: Ito Yumi , Narita Norihiko , Nomi Nozomi , Sugimoto Chizuru , Takabayashi Tetsuji , Yamada Takechiyo , Karaya Kazuhiro , Matsumoto Hideki , Fujieda Shigeharu 
Published: July 2015

AbstractCisplatin plays an important role in the therapy for human head and neck cancers. However, cancer cells develop cisplatin resistance, leading to difficulty in treatment and poor prognosis. To analyze cisplatin-resistant mechanisms, a cisplatin-resistant cell line, IMC-3CR, was established from the IMC-3 human maxillary cancer cell line. Flow cytometry revealed that, compared with IMC-3 cells, cisplatin more dominantly induced cell cycle G2/M arrest rather than apoptosis in IMC-3CR cells. That fact suggests that IMC-3CR cells avoid cisplatin-induced apoptosis through induction of G2/M arrest, which allows cancer cells to repair damaged DNA and survive. In the present study, we specifically examined Poly(rC)-Binding Protein 4 (PCBP4), which reportedly induces G2/M arrest. Results showed that suppression of PCBP4 by RNAi reduced cisplatin-induced G2/M arrest and enhanced apoptosis in IMC-3CR cells, resulting in the reduction of cisplatin resistance. In contrast, overexpression of PCBP4 in IMC-3 cells induced G2/M arrest after cisplatin treatment and enhanced cisplatin resistance. We revealed that PCBP4 combined with Cdc25A and suppressed the expression of Cdc25A, resulting in G2/M arrest. PCBP4 plays important roles in the induction of cisplatin resistance in human maxillary cancers. PCBP4 is a novel molecular target for the therapy of head and neck cancers, especially cisplatin-resistant cancers.
Insight on how fishing bats discern prey and adjust their mechanic and sensorial features during the attack sequence
Authors: Aizpurua Ostaizka , Alberdi Antton , Aihartza Joxerra , Garin Inazio 
Published: July 2015

AbstractSeveral insectivorous bats have included fish in their diet, yet little is known about the processes underlying this trophic shift. We performed three field experiments with wild fishing bats to address how they manage to discern fish from insects and adapt their hunting technique to capture fish. We show that bats react only to targets protruding above the water and discern fish from insects based on prey disappearance patterns. Stationary fish trigger short and shallow dips and a terminal echolocation pattern with an important component of the narrowband and low frequency calls. When the fish disappears during the attack process, bats regulate their attack increasing the number of broadband and high frequency calls in the last phase of the echolocation as well as by lengthening and deepening their dips. These adjustments may allow bats to obtain more valuable sensorial information and to perform dips adjusted to the level of uncertainty on the location of the submerged prey. The observed ultrafast regulation may be essential for enabling fishing to become cost-effective in bats and demonstrates the ability of bats to rapidly modify and synchronise their sensorial and motor features as a response to last minute stimulus variations.
Behavioral inhibition in childhood predicts smaller hippocampal volume in adolescent offspring of parents with panic disorder
Authors: Schwartz C E , Kunwar P S , Hirshfeld-Becker D R , Henin A , Vangel M G , Rauch S L , Biederman J , Rosenbaum J F 
Published: July 2015

AbstractBehavioral inhibition (BI) is a genetically influenced behavioral profile seen in 15–20% of 2-year-old children. Children with BI are timid with people, objects and situations that are novel or unfamiliar, and are more reactive physiologically to these challenges as evidenced by higher heart rate, pupillary dilation, vocal cord tension and higher levels of cortisol. BI predisposes to the later development of anxiety, depression and substance abuse. Reduced hippocampal volumes have been observed in anxiety disorders, depression and posttraumatic stress disorder. Animal models have demonstrated that chronic stress can damage the hippocampal formation and implicated cortisol in these effects. We, therefore, hypothesized that the hippocampi of late adolescents who had been behaviorally inhibited as children would be smaller compared with those who had not been inhibited. Hippocampal volume was measured with high-resolution structural magnetic resonance imaging in 43 females and 40 males at 17 years of age who were determined to be BI+ or BI− based on behaviors observed in the laboratory as young children. BI in childhood predicted reduced hippocampal volumes in the adolescents who were offspring of parents with panic disorder, or panic disorder with comorbid major depression. We discuss genetic and environmental factors emanating from both child and parent that may explain these findings. To the best of our knowledge, this is the first study to demonstrate a relationship between the most extensively studied form of temperamentally based human trait anxiety, BI, and hippocampal structure. The reduction in hippocampal volume, as reported by us, suggests a role for the hippocampus in human trait anxiety and anxiety disorder that warrants further investigation.
Analysis of exome sequence in 604 trios for recessive genotypes in schizophrenia
Authors: Rees E , Kirov G , Walters J T , Richards A L , Howrigan D , Kavanagh D H , Pocklington A J , Fromer M , Ruderfer D M , Georgieva L , Carrera N , Gormley P , Palta P , Williams H , Dwyer S , Johnson J S , Roussos P , Barker D D , Banks E , Milanova V , Rose S A , Chambert K , Mahajan M , Scolnick E M , Moran J L , Tsuang M T , Glatt S J , Chen W J , Hwu H -G ,   The Taiwanese Trios Exome Sequencing Consortium, Faraone Stephen V , Roe Cheri A , Chandler Sharon D , Liu Chih-Min , Liu Chen-Chung , Yeh Ling-Ling , Ouyang Wen-Chen , Chan Hung-Yu , Chen Chun-Ying , Neale B M , Palotie A , Sklar P , Purcell S M , McCarroll S A , Holmans P , Owen M J , O'Donovan M C 
Published: July 2015

AbstractGenetic associations involving both rare and common alleles have been reported for schizophrenia but there have been no systematic scans for rare recessive genotypes using fully phased trio data. Here, we use exome sequencing in 604 schizophrenia proband–parent trios to investigate the role of recessive (homozygous or compound heterozygous) nonsynonymous genotypes in the disorder. The burden of recessive genotypes was not significantly increased in probands at either a genome-wide level or in any individual gene after adjustment for multiple testing. At a system level, probands had an excess of nonsynonymous compound heterozygous genotypes (minor allele frequency, MAF ⩽1%) in voltage-gated sodium channels (VGSCs; eight in probands and none in parents, P=1.5 × 10−4). Previous findings of multiple de novo loss-of-function mutations in this gene family, particularly SCN2A, in autism and intellectual disability provide biological and genetic plausibility for this finding. Pointing further to the involvement of VGSCs in schizophrenia, we found that these genes were enriched for nonsynonymous mutations (MAF ⩽0.1%) in cases genotyped using an exome array, (5585 schizophrenia cases and 8103 controls), and that in the trios data, synaptic proteins interacting with VGSCs were also enriched for both compound heterozygosity (P=0.018) and de novo mutations (P=0.04). However, we were unable to replicate the specific association with compound heterozygosity at VGSCs in an independent sample of Taiwanese schizophrenia trios (N=614). We conclude that recessive genotypes do not appear to make a substantial contribution to schizophrenia at a genome-wide level. Although multiple lines of evidence, including several from this study, suggest that rare mutations in VGSCs contribute to the disorder, in the absence of replication of the original findings regarding compound heterozygosity, this conclusion requires evaluation in a larger sample of trios.
The mucolipidosis IV Ca2+ channel TRPML1 (MCOLN1) is regulated by the TOR kinase
Authors: Onyenwoke Rob U. , Sexton Jonathan Z. , Yan Feng , Díaz María Cristina Huertas , Forsberg Lawrence J. , Major Michael B. , Brenman Jay E. 
Published: July 2015

Autophagy is a complex pathway regulated by numerous signalling events that recycles macromolecules and may be perturbed in lysosomal storage disorders (LSDs). During autophagy, aberrant regulation of the lysosomal Ca2+ efflux channel TRPML1 [transient receptor potential mucolipin 1 (MCOLN1)], also known as MCOLN1, is solely responsible for the human LSD mucolipidosis type IV (MLIV); however, the exact mechanisms involved in the development of the pathology of this LSD are unknown. In the present study, we provide evidence that the target of rapamycin (TOR), a nutrient-sensitive protein kinase that negatively regulates autophagy, directly targets and inactivates the TRPML1 channel and thereby functional autophagy, through phosphorylation. Further, mutating these phosphorylation sites to unphosphorylatable residues proved to block TOR regulation of the TRPML1 channel. These findings suggest a mechanism for how TOR activity may regulate the TRPML1 channel.
Force generation by the growth of amyloid aggregates
Authors: Herling Therese W. , Garcia Gonzalo A. , Michaels Thomas C. T. , Grentz Wolfgang , Dean James , Shimanovich Ulyana , Gang Hongze , Müller Thomas , Kav Batuhan , Terentjev Eugene M. , Dobson Christopher M. , Knowles Tuomas P. J. 
Published: July 2015

Significance
Force generation by active biological materials, in particular through native protein polymerization, is a key feature of cellular function and motility. Protein polymerization to form amyloid fibrils is associated with a number of devastating and currently incurable protein misfolding diseases. Unlike the polymerization of actin and tubulin driving cell motility, little is known about the mechanical properties of amyloid fibril growth. Here, we present direct experimental measurements of the force generated by growing amyloid fibrils. These measurements demonstrate that amyloid growth can release comparable forces to actin and tubulin polymerization. This conclusion is remarkable as actin and tubulin, unlike proteins forming amyloid fibrils, have evolved to generate force.
Robust network oscillations during mammalian respiratory rhythm generation driven by synaptic dynamics
Authors: Guerrier Claire , Hayes John A. , Fortin Gilles , Holcman David 
Published: July 2015

Significance
The mechanism underlying mammalian respiratory rhythm generation in the preBötzinger complex is still under debate. Here, we developed a simulation model to show that a synaptic depression/facilitation mechanism sufficient for neurons to generate network rhythms, without the need for intrinsically rhythmic neurons. Simulations of the model under several normal or pathological conditions the living system experiences, together with critical electrophysiological experiments, converge to show that randomly connected neuronal networks with synaptic dynamics underlie rhythmic activity. This study provides a generally applicable mechanism for other central pattern generator systems that are less well understood.
Toward a theory of punctuated subsistence change
Authors: Ullah Isaac I. T. , Kuijt Ian , Freeman Jacob 
Published: July 2015

SignificanceThe questions of how, when, and why humans transitioned from hunting and gathering to food production are important to understand the evolution and sustainability of agricultural economies. We explore cross-cultural data on human subsistence with multivariate techniques and interpret the results from the perspective of human societies as complex adaptive systems. We gain insight into several controlling variables that may inordinately influence the possibilities for subsistence change and into why the forager–farmer transition occurred quickly in some cases and more gradually in others.
Stress controls the mechanics of collagen networks
Authors: Licup Albert James , Münster Stefan , Sharma Abhinav , Sheinman Michael , Jawerth Louise M. , Fabry Ben , Weitz David A. , MacKintosh Fred C. 
Published: July 2015

Significance
We report nonlinear rheology experiments on collagen type I networks, which demonstrate a surprising concentration independence of the network stiffness in the nonlinear elastic regime. We develop a model that can account for this, as well as the classical observations of an approximate exponential stress–strain relationship in collagenous tissues, for which a microscopic model has been lacking. Our model also demonstrates the importance of normal stresses in controlling the nonlinear mechanics of fiber networks.