bluuebunny/crossref_metadata_2025_split huggingface dataset:
Diversity of features of the female reproductive system and other morphological characters in leeches (Citellata, Hirudinida) in phylogenetic conception
Authors: Bielecki Aleksander , Świątek Piotr , Cichocka Joanna M. , Siddall Mark E. , Urbisz Anna Z. , Płachno Bartosz J. 
Published: April 2014

AbstractAn epistemological–evolutionary conception of leeches (Hirudinida) based on features of the female reproductive system in combination with other morphological characters is presented in the spirit of the cladistic school of taxonomy. Characters relating to the structure of the ovary and the course of oogenesis in leeches were interpreted in this manner, for the first time. Each study was conducted on type species of higher taxonomic groups of true leeches. Results of analyses using features of the reproductive system only as well as in combination with other morphological characters show Piscicolidae and Glossiphoniidae as sister clades making Rhynchobdellida a monophyletic group. Also, Hirudiniformes and Erpobdelliformes appeared to be sister clades within Arhynchobdellida. The relationship between the outgroup specimens and leeches remained unresolved, because both Acanthobdella peledina and branchiobdellidans appeared to be in an equivocal relationship to hirudinidans. Characters concerning the structure of the female reproductive system and course of oogenesis thus appeared to be useful, although conservative, for reconstruction of leech phylogeny, and they well reflect phylogenetic relationships of Hirudinida at the family level.
Normal values for heart rate variability parameters in children 6–8 years of age: the PANIC Study
Authors: Seppälä Santeri , Laitinen Tomi , Tarvainen Mika P. , Tompuri Tuomo , Veijalainen Aapo , Savonen Kai , Lakka Timo 
Published: April 2014

SummaryBackgroundMeasurement of heart rate variability (HRV) is a useful method for examining cardiac autonomic control. HRV has been measured in many studies among adults, but research on this topic among children is limited. We therefore defined reference values for a large number of HRV parameters among children.MethodsThe subjects were a population sample of 465 mainly prepubertal children 6–8 years of age. Electrocardiogram (ECG) was recorded at rest, and 1‐ and 5‐min ECG samples were selected for HRV analyses. HRV data were analysed in boys and girls separately to study possible gender differences in HRV parameters. Pearson's coefficients for correlation of age, maturity stage, height, weight and body mass index – standard deviation score (BMI‐SDS) with HRV parameters were computed to study whether these factors confounded the definition of the reference values for HRV parameters.ResultsWe found no statistically significant differences in HRV parameters between genders. Therefore, we defined the reference values for all HRV parameters as 5th, 25th, 50th, 75th and 95th percentiles from the ECG samples in all children, but not in boys and girls separately. Age, maturity stage, height, weight and BMI‐SDS had weak, if any, associations with HRV parameters, suggesting that they did not confound the definition of the reference values.ConclusionSame reference values for HRV parameters can be used in boys and girls. Although 5‐min ECG recordings are preferable for measuring HRV, also 1‐min recordings provide reliable data on most HRV parameters, especially those that mainly describe cardiac parasympathetic regulation.
Growth variability of brook charr (Salvelinus fontinalis) in coastal maine
Authors: Kazyak David , Letcher Benjamin H. , Zydlewski Joseph , O'Donnell Matthew J. 
Published: April 2014

AbstractBrook charr inhabit a wide variety of habitats and exhibit considerable growth variation within and among populations. We used biannual mark–recapture electrofishing surveys and PIT tags at two streams in coastal Maine to examine spatial and temporal variability in brook charr growth. We documented considerable stream‐to‐stream and year‐to‐year variation in the growth of coastal brook charr. Based on 2892 recaptures between 2006 and 2010, we developed a suite of linear mixed models to examine variation in individual growth rates at Stanley Brook as a function of environmental variables. We distilled physical habitat data from surveys in 2010 into principle components for entry into the growth model. Growth was related primarily to an interaction between season and body length, mean water temperature, and instream location. Growth rates were highest in the summer, and smaller individuals grew more rapidly than larger conspecifics in the same stream. Individuals using habitats closer to the head of tide grew faster than those in upstream locations. Physical habitat variation was not an important control of individual growth variation within Stanley Brook. We suggest local variability in growth rates should be considered when developing management strategies for coastal populations.
Use of Machine Learning Methods to Reduce Predictive Error of Groundwater Models
Authors: Xu Tianfang , Valocchi Albert J. , Choi Jaesik , Amir Eyal 
Published: April 2014

AbstractQuantitative analyses of groundwater flow and transport typically rely on a physically‐based model, which is inherently subject to error. Errors in model structure, parameter and data lead to both random and systematic error even in the output of a calibrated model. We develop complementary data‐driven models (DDMs) to reduce the predictive error of physically‐based groundwater models. Two machine learning techniques, the instance‐based weighting and support vector regression, are used to build the DDMs. This approach is illustrated using two real‐world case studies of the Republican River Compact Administration model and the Spokane Valley‐Rathdrum Prairie model. The two groundwater models have different hydrogeologic settings, parameterization, and calibration methods. In the first case study, cluster analysis is introduced for data preprocessing to make the DDMs more robust and computationally efficient. The DDMs reduce the root‐mean‐square error (RMSE) of the temporal, spatial, and spatiotemporal prediction of piezometric head of the groundwater model by 82%, 60%, and 48%, respectively. In the second case study, the DDMs reduce the RMSE of the temporal prediction of piezometric head of the groundwater model by 77%. It is further demonstrated that the effectiveness of the DDMs depends on the existence and extent of the structure in the error of the physically‐based model.
Influence of Boundary Condition Types on Unstable Density‐Dependent Flow
Authors: Ataie‐Ashtiani Behzad , Simmons Craig T. , Werner Adrian D. 
Published: April 2014

AbstractBoundary conditions are required to close the mathematical formulation of unstable density‐dependent flow systems. Proper implementation of boundary conditions, for both flow and transport equations, in numerical simulation are critical. In this paper, numerical simulations using the FEFLOW model are employed to study the influence of the different boundary conditions for unstable density‐dependent flow systems. A similar set up to the Elder problem is studied. It is well known that the numerical simulation results of the standard Elder problem are strongly dependent on spatial discretization. This work shows that for the cases where a solute mass flux boundary condition is employed instead of a specified concentration boundary condition at the solute source, the numerical simulation results do not vary between different convective solution modes (i.e., plume configurations) due to the spatial discretization. Also, the influence of various boundary condition types for nonsource boundaries was studied. It is shown that in addition to other factors such as spatial and temporal discretization, the forms of the solute transport equation such as divergent and convective forms as well as the type of boundary condition employed in the nonsource boundary conditions influence the convective solution mode in coarser meshes. On basis of the numerical experiments performed here, higher sensitivities regarding the numerical solution stability are observed for the Adams‐Bashford/Backward Trapezoidal time integration approach in comparison to the Euler‐Backward/Euler‐Forward time marching approach. The results of this study emphasize the significant consequences of boundary condition choice in the numerical modeling of unstable density‐dependent flow.
Analytical Solutions of Travel Time to a Pumping Well with Variable Evapotranspiration
Authors: Chen Tian‐Fei , Wang Xu‐Sheng , Wan Li , Li Hailong 
Published: April 2014

AbstractAnalytical solutions of groundwater travel time to a pumping well in an unconfined aquifer have been developed in previous studies, however, the change in evapotranspiration was not considered. Here, we develop a mathematical model of unconfined flow toward a discharge well with redistribution of groundwater evapotranspiration for travel time analysis. Dependency of groundwater evapotranspiration on the depth to water table is described using a linear formula with an extinction depth. Analytical solutions of groundwater level and travel time are obtained. For a typical hypothetical example, these solutions perfectly agree with the numerical simulation results based on MODFLOW and MODPATH. As indicated in a dimensionless framework, a lumped parameter which is proportional to the pumping rate controls the distributions of groundwater evapotranspiration rate and the travel time along the radial direction.
Groundwater Recharge Rate and Zone Structure Estimation Using PSOLVER Algorithm
Authors: Ayvaz M. Tamer , Elçi Alper 
Published: April 2014

AbstractThe quantification of groundwater recharge is an important but challenging task in groundwater flow modeling because recharge varies spatially and temporally. The goal of this study is to present an innovative methodology to estimate groundwater recharge rates and zone structures for regional groundwater flow models. Here, the unknown recharge field is partitioned into a number of zones using Voronoi Tessellation (VT). The identified zone structure with the recharge rates is associated through a simulation‐optimization model that couples MODFLOW‐2000 and the hybrid PSOLVER optimization algorithm. Applicability of this procedure is tested on a previously developed groundwater flow model of the Tahtalı Watershed. Successive zone structure solutions are obtained in an additive manner and penalty functions are used in the procedure to obtain realistic and plausible solutions. One of these functions constrains the optimization by forcing the sum of recharge rates for the grid cells that coincide with the Tahtalı Watershed area to be equal to the areal recharge rate determined in the previous modeling by a separate precipitation‐runoff model. As a result, a six‐zone structure is selected as the best zone structure that represents the areal recharge distribution. Comparison to results of a previous model for the same study area reveals that the proposed procedure significantly improves model performance with respect to calibration statistics. The proposed identification procedure can be thought of as an effective way to determine the recharge zone structure for groundwater flow models, in particular for situations where tangible information about groundwater recharge distribution does not exist.
Complexity vs. Simplicity: Groundwater Model Ranking Using Information Criteria
Authors: Engelhardt I. , De Aguinaga J.G. , Mikat H. , Schüth C. , Liedl R. 
Published: April 2014

AbstractA groundwater model characterized by a lack of field data about hydraulic model parameters and boundary conditions combined with many observation data sets for calibration purpose was investigated concerning model uncertainty. Seven different conceptual models with a stepwise increase from 0 to 30 adjustable parameters were calibrated using PEST. Residuals, sensitivities, the Akaike information criterion (AIC and AICc), Bayesian information criterion (BIC), and Kashyap's information criterion (KIC) were calculated for a set of seven inverse calibrated models with increasing complexity. Finally, the likelihood of each model was computed. Comparing only residuals of the different conceptual models leads to an overparameterization and certainty loss in the conceptual model approach. The model employing only uncalibrated hydraulic parameters, estimated from sedimentological information, obtained the worst AIC, BIC, and KIC values. Using only sedimentological data to derive hydraulic parameters introduces a systematic error into the simulation results and cannot be recommended for generating a valuable model. For numerical investigations with high numbers of calibration data the BIC and KIC select as optimal a simpler model than the AIC. The model with 15 adjusted parameters was evaluated by AIC as the best option and obtained a likelihood of 98%. The AIC disregards the potential model structure error and the selection of the KIC is, therefore, more appropriate. Sensitivities to piezometric heads were highest for the model with only five adjustable parameters and sensitivity coefficients were directly influenced by the changes in extracted groundwater volumes.
Denitrification in a Deep Basalt Aquifer: Implications for Aquifer Storage and Recovery
Authors: Nelson Dennis , Melady Jason 
Published: April 2014

AbstractAquifer storage and recovery (ASR) can provide a means of storing water for irrigation in agricultural areas where water availability is limited. A concern, however, is that the injected water may lead to a degradation of groundwater quality. In many agricultural areas, nitrate is a limiting factor. In the Umatilla Basin in north central Oregon, shallow alluvial groundwater with elevated nitrate‐nitrogen of <3 mg/L to >9 mg/L is injected into the Columbia River Basalt Group (CRBG), a transmissive confined aquifer(s) with low natural recharge rates. Once recovery of the injected water begins, however, NO3‐N in the recovered water decreases quickly to <3 mg/L (Eaton et al. 2009), suggesting that NO3‐N may not persist within the CRBG during ASR storage. In contrast to NO3‐N, other constituents in the recovered water show little variation, inconsistent with migration or simple mixing as an explanation of the NO3‐N decrease. Nitrogen isotopic ratios (δ15N) increase markedly, ranging from +3.5 to > +50, and correlate inversely with NO3‐N concentrations. This variation occurs in <3 weeks and recovery of <10% of the originally injected volume. TOC is low in the basalt aquifer, averaging <1.5 mg/L, but high in the injected source water, averaging >3.0 mg/L. Similar to nitrate concentrations, TOC drops in the recovered water, consistent with this component contributing to the denitrification of nitrate during storage.
Parallelization of MODFLOW Using a GPU Library
Authors: Ji Xiaohui , Li Dandan , Cheng Tangpei , Wang Xu‐Sheng , Wang Qun 
Published: April 2014

AbstractA new method based on a graphics processing unit (GPU) library is proposed in the paper to parallelize MODFLOW. Two programs, GetAb_CG and CG_GPU, have been developed to reorganize the equations in MODFLOW and solve them with the GPU library. Experimental tests using the NVIDIA Tesla C1060 show that a 1.6‐ to 10.6‐fold speedup can be achieved for models with more than 105 cells. The efficiency can be further improved by using up‐to‐date GPU devices.
Exploring the effects of organizational justice, personal ethics and sanction on internet use policy compliance
Authors: Li Han , Sarathy Rathindra , Zhang Jie , Luo Xin 
Published: April 2014

AbstractInternet security risks, the leading security threats confronting today's organizations, often result from employees' non‐compliance with the internet use policy (IUP). Extant studies on compliance with security policies have largely ignored the impact of intrinsic motivation on employees' compliance intention. This paper proposes a theoretical model that integrates an intrinsic self‐regulatory approach with an extrinsic sanction‐based command‐and‐control approach to examine employees' IUP compliance intention. The self‐regulatory approach centers on the effect of organizational justice and personal ethical objections against internet abuses. The results of this study suggest that the self‐regulatory approach is more effective than the sanction‐based command‐and‐control approach. Based on the self‐regulatory approach, organizational justice not only influences IUP compliance intention directly but also indirectly through fostering ethical objections against internet abuses. This research provides empirical evidence of two additional effective levers for enhancing security policy compliance: organizational justice and personal ethics.
Changes in liver fibrosis in HIV/HCV‐coinfected patients following different outcomes with peginterferon plus ribavirin therapy
Authors: Labarga P. , Fernandez‐Montero J. V. , Barreiro P. , Pinilla J. , Vispo E. , de Mendoza C. , Plaza Z. , Soriano V. 
Published: April 2014

SummaryThere is scarce information about the impact of antiviral treatment on subsequent progression of liver fibrosis in HIV‐infected patients with chronic hepatitis C who experience different outcomes following peginterferon‐ribavirin therapy. We conducted a retrospective study of a cohort of HIV/HCV‐coinfected patients with longitudinal assessment of liver fibrosis using elastometry. Patients were split out into four groups according to the prior peginterferon‐ribavirin response: sustained virological response (SVR), relapse (R), partial response (PR) and null response (NR). A group of untreated, coinfected patients was taken as control. Significant liver fibrosis progression (sLFP) was defined as a shift from baseline Metavir estimates ≤F2 to F3‐F4, or by >30% increase in liver stiffness in patients with baseline F3‐F4. Conversely, significant liver fibrosis regression (sLFR) was defined as a shift from baseline Metavir estimates F3‐F4 to ≤F2, or by >30% reduction in liver stiffness in patients that kept on F3‐F4. A total of 498 HIV/HCV‐coinfected patients were examined. They were classified as follows: 138 (27.7%) SVR, 40 (8%) R, 61 (12.2%) PR, 71 (14.3%) NR and 188 (37.8%) naive. After a mean follow‐up of 53.3 months, sLFP occurred less frequently in patients with SVR (7.2%) compared with R (25%; P = 0.002), PR (23%; P = 0.002), NR (29.6%; P < 0.001) and naïve (19.7%; P = 0.002). Conversely, sLFR was 26.1% in SVR compared with 10% in R (P = 0.03), 14.8% in PR (P = 0.06), 16.9% in NR (P = 0.07) and 10.6% in naïve (P < 0.001). Sustained clearance of serum HCV‐RNA following a course of antiviral treatment is the major determinant of liver fibrosis regression in HIV/HCV‐coinfected patients.
Pharmacokinetics and safety of firocoxib after oral administration of repeated consecutive doses to neonatal foals
Authors: Hovanessian N. , Davis J.L. , McKenzie H.C. , Hodgson J.L. , Hodgson D.R. , Crisman M.V. 
Published: April 2014

The purpose of this study was to determine the pharmacokinetics and safety profile of firocoxib in neonatal foals. Seven healthy foals were administered 0.1 mg/kg firocoxib orally q24 h for nine consecutive days, commencing at 36 h of age. Blood was collected for firocoxib analysis using high‐pressure liquid chromatography with fluorescence detection at 0 (dose #1 only), 0.25, 0.5, 1, 2, 4, 8, 16, and 24 h after doses 1, 5, and 9. For all other doses (2, 3, 4, 6, 7, and 8), blood was collected immediately prior to the next dose (24 h trough). Elimination samples (36, 48, 72, 96, 120, and 144 h) were collected after dose 9. Safety was assessed via physical examinations, body weight measurements, gastroscopy, complete blood count, plasma biochemistry and urinalysis. Firocoxib was rapidly absorbed following oral administration with minimal accumulation after repeat dosing. After the final dose, the terminal half‐life was approximately 11 h. Firocoxib was below the limit of detection (<2.5 ng/mL) in plasma 72 h after the final dose. No significant abnormalities were found on blood analyses, urinalysis, or gastroscopy. This study demonstrated that firocoxib is absorbed in neonatal foals with no demonstrable adverse effects after repeated doses of 0.1 mg/kg.
Repellent effectiveness of seven plant essential oils, sunflower oil and natural insecticides against horn flies on pastured dairy cows and heifers
Authors: LACHANCE S. , GRANGE G. 
Published: April 2014

AbstractPlant essential oils (basil, geranium, balsam fir, lavender, lemongrass, peppermint, pine and tea tree), mixed with either sunflower oil or ethyl alcohol, were applied at 5% concentrations to the sides of Holstein cattle. Pastured cattle treated with essential oils diluted in sunflower oil had less flies than the untreated control for a 24‐h period. However, the essential oil treatments were not significantly different than the carrier oil alone. Barn‐held heifers treated with essential oils and sunflower oil alone had significantly less flies than the untreated control for up to 8 h after treatment. Basil, geranium, lavender, lemongrass and peppermint repelled more flies than sunflower oil alone for a period ranging from 1.5 to 4 h after treatments applied to heifers. All essential oils repelled > 75% of the flies on the treated area for 6 and 8 h on pastured cows and indoor heifers, respectively. Geranium, lemongrass and peppermint stayed effective for a longer duration. Essential oils mixed with ethyl alcohol demonstrated less repellence than when mixed with the carrier oil. Safer's soap, natural pyrethrins without piperonyl butoxide and ethyl alcohol alone were not efficient at repelling flies. Essential oils could be formulated for use as fly repellents in livestock production.
Bilateral ocular anomalies in a South African fur seal (Arctocephalus pusillus pusillus)
Authors: Colitz Carmen M. H. , Rudnick Jens‐Christian , Heegaard Steffen 
Published: April 2014

AbstractA female South African fur seal (Arctocephalus pusillus pusillus) began having obvious clinical ophthalmologic problems by 8 weeks of age. The initial clinical sign was diffuse corneal edema, which progressed to bullae formation and ulcers; the underlying cause of corneal edema and bullous keratopathy was not identified antemortem. An ophthalmological evaluation was performed when the fur seal was approximately 6 months of age, but due to the diffuse corneal edema, intraocular structures could not be easily evaluated. An underlying infectious etiology was suspected; therefore, appropriate diagnostics were pursued, but did not identify a cause. Initial improvement was noted, but the fur seal then became blind and eventually became very painful. Due to decreased quality of life and aggressive behavior, the fur seal was euthanized. Histopathological diagnoses were persistent tunica vasculosa lentis and persistent hyperplastic primary vitreous with bilateral hypermature resorbed cataracts and retinal detachments with rosette formation.
Draft Genome Sequence of
Streptomyces
sp. Strain PRh5, a Novel Endophytic Actinomycete Isolated from Dongxiang Wild Rice Root
Authors: Yang Huilin , Zhang Zhibin , Yan Riming , Wang Ya , Zhu Du 
Published: April 2014

ABSTRACT

Here, we report the draft genome sequence of
Streptomyces
sp. strain PRh5 (China Center for Type Culture Collection [CCTCC] number 2013487), which is used to produce nigericin and nocardamine. The genome sequence will allow for the characterization of the molecular mechanisms underlying its beneficial properties.