bluuebunny/crossref_metadata_2025_split huggingface dataset:
Diabetes mellitus and the risk of multidrug resistant tuberculosis: a meta-analysis
Authors: Liu Qianqian , Li Wenzhang , Xue Miao , Chen Yunfeng , Du Xinmiao , Wang Chengdi , Han Lina , Tang Yin , Feng Yulin , Tao Chuanmin , He Jian-Qing 
Published: April 2017

AbstractThe high prevalence of diabetes mellitus (DM) among multidrug resistant tuberculosis (MDR-TB) patients is a serious cause for concern. We conducted a meta-analysis to determine whether DM is an independent risk factor for MDR-TB. Electronic literature searches of the PubMed, Web of Science and EMBASE databases up to July 12, 2016 were conducted. The pooled adjusted odds ratio (OR) and 95% confidence intervals (CIs) were calculated using the random effects model with STATA 12.0 software. In total 13 studies, including 9289 individuals with TB, were included in this meta-analysis. Significant association between DM and MDR-TB (OR = 1.71; 95% CI = 1.32, 2.22) was identified. Subgroup analyses showed that: 1) Pooled OR was 1.25 (95% CI: 0.82–1.91) for cross-sectional studies, and was 2.14 (95% CI: 1.51–3.02) for longitudinal studies; 2) The pooled OR was 1.69 (95% CI:1.09–2.62) for primary MDR-TB, 1.94 (95% CI:1.42–2.65) for any MDR-TB, and 0.85 for secondary MDR-TB (95% CI: 0.29–2.54); 3) DM was significantly associated with MDR-TB in both Caucasian (OR = 2.26, 95% CI: 1.66–3.07) and Asian (OR = 1.40, 95% CI: 1.01–1.95) subgroups. No evidence of publication bias was identified. In conclusion, the pooling analysis indicated that DM was an independent risk factor for MDR-TB, especially for primary MDR-TB.
Transcriptome analysis on the exoskeleton formation in early developmetal stages and reconstruction scenario in growth-moulting in Litopenaeus vannamei
Authors: Gao Yi , Wei Jiankai , Yuan Jianbo , Zhang Xiaojun , Li Fuhua , Xiang Jianhai 
Published: April 2017

AbstractExoskeleton construction is an important issue in shrimp. To better understand the molecular mechanism of exoskeleton formation, development and reconstruction, the transcriptome of the entire developmental process in Litopenaeus vannamei, including nine early developmental stages and eight adult-moulting stages, was sequenced and analysed using Illumina RNA-seq technology. A total of 117,539 unigenes were obtained, with 41.2% unigenes predicting the full-length coding sequence. Gene Ontology, Clusters of Orthologous Group (COG), the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis and functional annotation of all unigenes gave a better understanding of the exoskeleton developmental process in L. vannamei. As a result, more than six hundred unigenes related to exoskeleton development were identified both in the early developmental stages and adult-moulting. A cascade of sequential expression events of exoskeleton-related genes were summarized, including exoskeleton formation, regulation, synthesis, degradation, mineral absorption/reabsorption, calcification and hardening. This new insight on major transcriptional events provide a deep understanding for exoskeleton formation and reconstruction in L. vannamei. In conclusion, this is the first study that characterized the integrated transcriptomic profiles cover the entire exoskeleton development from zygote to adult-moulting in a crustacean, and these findings will serve as significant references for exoskeleton developmental biology and aquaculture research.
Characterisation of a cell-free synthesised G-protein coupled receptor
Authors: Shilling Patrick J. , Bumbak Fabian , Scott Daniel J. , Bathgate Ross A. D. , Gooley Paul R. 
Published: April 2017

AbstractG-protein coupled receptors are the largest family of integral membrane proteins found within the human genome. They function as receptors and modulators to a wide range of ligands and responses which are crucial for human health. GPCR study, specifically the investigation of structure and interaction to cognate ligands, is of high priority. Limitations for structural study can be traced in part, to obtaining suitable quantities of recombinant protein. We sought to address the limitations of traditional recombinant technologies by utilising an Escherichia coli based cell-free protein synthesis (CFPS) approach for production of a thermostable neurotensin receptor 1 (en2NTS1). Initial results were promising, with a high amount (up to 2 mg/mL) of en2NTS1 produced, that had attained correct secondary structure. Meanwhile, concurrent experiments indicated that CFPS produced en2NTS1 showed non-competitive binding to the peptide ligand neurotensin8–13 when compared to E. coli produced en2NTS1. 1H-13C HMQC SOFAST NMR spectra were indicative of disrupted tertiary structure for CFPS produced 13CH3-methionine labelled en2NTS1. The results obtained, indicate CFPS produced en2NTS1 is not forming a discrete tertiary structure and that further development of the CFPS technique needs to be carried out.
Selective Targeting of Cancer Cells by Oxidative Vulnerabilities with Novel Curcumin Analogs
Authors: Pignanelli Christopher , Ma Dennis , Noel Megan , Ropat Jesse , Mansour Fadi , Curran Colin , Pupulin Simon , Larocque Kristen , Wu Jianzhang , Liang Guang , Wang Yi , Pandey Siyaram 
Published: April 2017

AbstractRecently, research has focused on targeting the oxidative and metabolic vulnerabilities in cancer cells. Natural compounds like curcumin that target such susceptibilities have failed further clinical advancements due to the poor stability and bioavailability as well as the need of high effective doses. We have synthesized and evaluated the anti-cancer activity of several monocarbonyl analogs of curcumin. Interestingly, two novel analogs (Compound A and I) in comparison to curcumin, have increased chemical stability and have greater anti-cancer activity in a variety of human cancer cells, including triple-negative, inflammatory breast cancer cells. In particular, the generation of reactive oxygen species was selective to cancer cells and occurred upstream of mitochondrial collapse and execution of apoptosis. Furthermore, Compound A in combination with another cancer-selective/pro-oxidant, piperlongumine, caused an enhanced anti-cancer effect. Most importantly, Compound A was well tolerated by mice and was effective in inhibiting the growth of human triple-negative breast cancer and leukemia xenografts in vivo when administered intraperitoneally. Thus, exploiting oxidative vulnerabilities in cancer cells could be a selective and efficacious means to eradicate malignant cells as demonstrated by the curcumin analogs presented in this report with high therapeutic potential.
A high-power and fast charging Li-ion battery with outstanding cycle-life
Authors: Agostini M. , Brutti S. , Navarra M. A. , Panero S. , Reale P. , Matic A. , Scrosati B. 
Published: April 2017

AbstractElectrochemical energy storage devices based on Li-ion cells currently power almost all electronic devices and power tools. The development of new Li-ion cell configurations by incorporating innovative functional components (electrode materials and electrolyte formulations) will allow to bring this technology beyond mobile electronics and to boost performance largely beyond the state-of-the-art. Here we demonstrate a new full Li-ion cell constituted by a high-potential cathode material, i.e. LiNi0.5Mn1.5O4, a safe nanostructured anode material, i.e. TiO2, and a composite electrolyte made by a mixture of an ionic liquid suitable for high potential applications, i.e. Pyr1,4PF6, a lithium salt, i.e. LiPF6, and standard organic carbonates. The final cell configuration is able to reversibly cycle lithium for thousands of cycles at 1000 mAg−1 and a capacity retention of 65% at cycle 2000.
Preparation of heterostructured WO3/TiO2 catalysts from wood fibers and its versatile photodegradation abilities
Authors: Gao Likun , Gan Wentao , Qiu Zhe , Zhan Xianxu , Qiang Tiangang , Li Jian 
Published: April 2017

AbstractA facile route was adopted to synthesize heterostructured WO3/TiO2 photocatalysts from wood fibers through a two-steps hydrothermal method and a calcination process. The prepared WO3/TiO2-wood fibers were used as photocatalysts under UV irradiation for photodegradation of rhodamine B, methylene blue and methyl orange. In calcination process, the wood fibers acted as carbon substrates to prepare the WO3/TiO2 photocatalysts with high surface area and unique morphology. Thus, the significant enhanced photodegradation efficiency of the organic pollutants with the WO3/TiO2-wood fibers under UV irradiation was obtained. The photodegradation rates are measured which confirms the highest performance of the WO3/TiO2-wood fibers after calcination in comparison to the TiO2-wood fibers after calcination and the pure WO3/TiO2 after calcination. Moreover, the photodegradation efficiency of the WO3/TiO2-wood fibers after calcination under visible light is high. Our results demonstrated that the WO3/TiO2-wood fibers after calcination are a promising candidate for wastewater treatment in practical application.
Recombinant Adeno-Associated Virus-mediated rescue of function in a mouse model of Dopamine Transporter Deficiency Syndrome
Authors: Illiano P. , Bass C.E. , Fichera L. , Mus L. , Budygin E.A. , Sotnikova T.D. , Leo D. , Espinoza S. , Gainetdinov R.R. 
Published: April 2017

AbstractDopamine Transporter Deficiency Syndrome (DTDS) is a rare autosomal recessive disorder caused by loss-of-function mutations in dopamine transporter (DAT) gene, leading to severe neurological disabilities in children and adults. DAT-Knockout (DAT-KO) mouse is currently the best animal model for this syndrome, displaying functional hyperdopaminergia and neurodegenerative phenotype leading to premature death in ~36% of the population. We used DAT-KO mouse as model for DTDS to explore the potential utility of a novel combinatorial adeno-associated viral (AAV) gene therapy by expressing DAT selectively in DA neurons and terminals, resulting in the rescue of aberrant striatal DA dynamics, reversal of characteristic phenotypic and behavioral abnormalities, and prevention of premature death. These data indicate the efficacy of a new combinatorial gene therapy aimed at rescuing DA function and related phenotype in a mouse model that best approximates DAT deficiency found in DTDS.
Nomograms for predicting the prognostic value of serological tumor biomarkers in colorectal cancer patients after radical resection
Authors: Li Qingguo , Dai Weixing , Li Yaqi , Xu Ye , Li Xinxiang , Cai Sanjun 
Published: April 2017

AbstractA wide range of serum tumor biomarkers, including CA19-9, CA242, CA72-4, CA50, and CA125, has been studied in association with colorectal cancer (CRC). However, few previous studies have comprehensively considered the above tumor biomarkers to assess their clinical significance in predicting prognosis. Data from Fudan University Shanghai Cancer Center (FUSCC) between January 1, 2007 and December 30, 2012 was retrospectively analyzed. Univariate and multivariate analyses were performed to assess the association between prognostic factors and survival outcomes. Nomograms were established based on multivariate Cox regression model analysis for overall survival (OS) and disease free survival (DFS), and c-indexes were 0.772 (95% CI: 0.724-0.820) and 0.715 (95% CI: 0.678–0.752), respectively. Subgroup analyses according to CEA status (high/normal) suggested that CA724 was the only independent prognostic factor for OS (P = 0.001) and DFS (P < 0.001) in the CEA-high group, while, in the CEA-normal group, the only independent prognostic factor for OS (P = 0.031) and DFS (P = 0.043) was CA50. CA50 and CA724 could supplement CEA in monitoring recurrence and metastasis. Accordingly, nomograms based on CEA, CA50, CA724 and other clinical-pathological factors could improve prognosis prediction for colorectal cancer patients.
Investigating the molecular mechanism of positive and negative allosteric modulators in the calcium-sensing receptor dimer
Authors: Jacobsen Stine Engesgaard , Gether Ulrik , Bräuner-Osborne Hans 
Published: April 2017

AbstractAllosteric modulators that are targeting the calcium-sensing receptor (CaSR) hold great therapeutic potential, and elucidating the molecular basis for modulation would thus benefit the development of novel therapeutics. In the present study, we aimed at investigating the mechanism of allosteric modulation in CaSR by testing dimers carrying mutations in the allosteric site of one or both of the subunits. To ensure measurements on a well-defined dimer composition, we applied a trans-activation system in which only the specific heterodimer of two loss-of-function mutants responded to agonist. Although one of these mutants was potentiated by a positive allosteric modulator, we showed that receptor activity was further potentiated in a trans-activation heterodimer containing a single allosteric site, however only when the allosteric site was located in the subunit responsible for G protein coupling. On the contrary, preventing activation in both subunits was necessary for obtaining full inhibition by a negative allosteric modulator. These findings correlate with the proposed activation mechanism of the metabotropic glutamate receptors (mGluRs), in which only a single transmembrane domain is activated at a time. CaSR and mGluRs belong to the class C G protein-coupled receptors, and our findings thus suggest that the activation mechanism is common to this subfamily.
Toll-like receptor polymorphisms compromise the inflammatory response against bacterial antigen translocation in cirrhosis
Authors: Piñero Paula , Juanola Oriol , Caparrós Esther , Zapater Pedro , Giménez Paula , González-Navajas José M. , Such José , Francés Rubén 
Published: April 2017

AbstractBacterial translocation is associated with clinically relevant complications in cirrhosis. We evaluated the effect of toll-like receptor polymorphisms in the soluble response against these episodes. Consecutive patients with cirrhosis and ascitic fluid were distributed by TLR2 rs4696480, TLR4 rs4986790, and TLR9 rs187084 single-nucleotide polymorphisms. Lipoteichoic acid, lipopolyssaccharide, bacterial-DNA, pro-inflammatory cytokines and nitric oxide levels were quantified in serum samples. In vitro response against specific ligands in variant TLR genotypes was evaluated. One hundred and fourteen patients were included. Variant TLR-2, TLR-4 and TLR-9 SNP genotypes were associated with significantly increased serum levels of LTA, LPS and bacterial-DNA. TNF-α, IL-6 and nitric oxide serum levels were significantly decreased in all variant TLR genotyped patients. Cytokine levels were significantly less upregulated in response to specific TLR-ligands in patients with all variant vs wildtype TLR genotypes. Although in vitro gene expression levels of all wildtype and variant TLRs were similar, MyD88 and NFkB were significantly downregulated in cells from TLR-variant genotyped patients in response to their ligands. Variant TLR genotypes are associated with an increased circulating antigen burden and a decreased proinflammatory response in cirrhosis. This immunodeficiency may facilitate bacteria-related complications in cirrhosis and enhance TLR targeting for its management.
Simulated climate effects of desert irrigation geoengineering
Authors: Cheng Wei , Moore John C. , Cao Long , Ji Duoying , Zhao Liyun 
Published: April 2017

AbstractGeoengineering, the deliberate large-scale manipulation of earth’s energy balance to counteract global warming, is an attractive proposition for sparsely populated deserts. We use the BNU and UVic Earth system models to simulate the effects of irrigating deserts under the RCP8.5 scenario. Previous studies focused on increasing desert albedo to reduce global warming; in contrast we examine how extending afforestation and ecological projects, that successfully improve regional environments, fair for geoengineering purposes. As expected desert irrigation allows vegetation to grow, with bare soil or grass gradually becoming shrub or tree covered, with increases in terrestrial carbon storage of 90.3 Pg C (UVic-ESCM) – 143.9 Pg C (BNU-ESM). Irrigating global deserts makes the land surface temperature decrease by 0.48 °C and land precipitation increase by 100 mm yr−1. In the irrigated areas, BNU-ESM simulates significant cooling of up to 4.2 °C owing to the increases in low cloud and latent heat which counteract the warming effect due to decreased surface albedo. Large volumes of water would be required to maintain global desert irrigation, equivalent 10 mm/year of global sea level (BNU-ESM) compensate for evapotranspiration losses. Differences in climate responses between the deserts prompt research into tailored albedo-irrigation schemes.
Multicolour nanoscopy of fixed and living cells with a single STED beam and hyperspectral detection
Authors: Winter Franziska R. , Loidolt Maria , Westphal Volker , Butkevich Alexey N. , Gregor Carola , Sahl Steffen J. , Hell Stefan W. 
Published: April 2017

AbstractThe extension of fluorescence nanoscopy to larger numbers of molecular species concurrently visualized by distinct markers is of great importance for advanced biological applications. To date, up to four markers had been distinguished in STED experiments featuring comparatively elaborate imaging schemes and optical setups, and exploiting various properties of the fluorophores. Here we present a simple yet versatile STED design for multicolour imaging below the diffraction limit. A hyperspectral detection arrangement (hyperSTED) collects the fluorescence in four spectral channels, allowing the separation of four markers with only one excitation wavelength and a single STED beam. Unmixing of the different marker signals based on the simultaneous readout of all channels is performed with a non-negative matrix factorization algorithm. We illustrate the approach showing four-colour nanoscopy of fixed and living cellular samples.
Revealing inhibition difference between PFI-2 enantiomers against SETD7 by molecular dynamics simulations, binding free energy calculations and unbinding pathway analysis
Authors: Niu Yuzhen , Shi Danfeng , Li Lanlan , Guo Jingyun , Liu Huanxiang , Yao Xiaojun 
Published: April 2017

AbstractSETD7 is associated with multiple diseases related signaling pathways. (R)-PFI-2 is the first SETD7 inhibitor with nanomolar inhibitory potency. The activity of (R)-PFI-2 is about 500 times over that of (S)-PFI-2. Understanding the mechanism behind this difference will be helpful to discovery and design of more potent SETD7 inhibitors. A computational study combining molecular dynamics simulation, binding free energy calculations, and residue interaction network (RIN) was performed on the (S)-PFI-2/SETD7 and (R)-PFI-2/SETD7 complexes to explore the molecular mechanism behind the different inhibition activity. The results from Molecular Mechanics/Generalized Born Surface Area (MM/GBSA) calculation show (R)-PFI-2 has lower binding free energy. Residues H252, D256, L267, Y335, G336 and H339 are responsible for the binding of SETD7 to the (R)-PFI-2. RIN analysis indicates van der Waals interaction is critical for the binding of (R)-PFI-2. The results from adaptive basing force (ABF) simulation confirm that the free energy barrier of (R)-PFI-2 dissociating from the SETD7 is larger than that of (S)-PFI-2. (S)-PFI-2 and (R)-PFI-2 dissociate from the SETD7 binding site along different reaction coordinate and have potential mean of force (PMF) depth. Our simulations results will be useful to understand molecular mechanism of activity difference between PFI-2 enantiomers against SETD7.
Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism
Authors: Yin Ling , An Yunhe , Qu Junjie , Li Xinlong , Zhang Yali , Dry Ian , Wu Huijuan , Lu Jiang 
Published: April 2017

AbstractPlasmopara viticolacauses downy mildew disease of grapevine which is one of the most devastating diseases of viticulture worldwide. Here we report a 101.3 Mb whole genome sequence ofP. viticolaisolate ‘JL-7-2’ obtained by a combination of Illumina and PacBio sequencing technologies. TheP. viticolagenome contains 17,014 putative protein-coding genes and has ~26% repetitive sequences. A total of 1,301 putative secreted proteins, including 100 putative RXLR effectors and 90 CRN effectors were identified in this genome. In the secretome, 261 potential pathogenicity genes and 95 carbohydrate-active enzymes were predicted. Transcriptional analysis revealed that most of the RXLR effectors, pathogenicity genes and carbohydrate-active enzymes were significantly up-regulated during infection. Comparative genomic analysis revealed thatP. viticolaevolved independently from the Arabidopsis downy mildew pathogenHyaloperonospora arabidopsidis. The availability of theP. viticolagenome provides a valuable resource not only for comparative genomic analysis and evolutionary studies among oomycetes, but also enhance our knowledge on the mechanism of interactions between this biotrophic pathogen and its host.
Light-Patterned Current Generation in a Droplet Bilayer Array
Authors: Restrepo Schild Vanessa , Booth Michael J. , Box Stuart J. , Olof Sam N. , Mahendran Kozhinjampara R. , Bayley Hagan 
Published: April 2017

AbstractWe have created a 4 × 4 droplet bilayer array comprising light-activatable aqueous droplet bio-pixels. Aqueous droplets containing bacteriorhodopsin (bR), a light-driven proton pump, were arranged on a common hydrogel surface in lipid-containing oil. A separate lipid bilayer formed at the interface between each droplet and the hydrogel; each bilayer then incorporated bR. Electrodes in each droplet simultaneously measured the light-driven proton-pumping activities of each bio-pixel. The 4 × 4 array derived by this bottom-up synthetic biology approach can detect grey-scale images and patterns of light moving across the device, which are transduced as electrical current generated in each bio-pixel. We propose that synthetic biological light-activatable arrays, produced with soft materials, might be interfaced with living tissues to stimulate neuronal pathways.
The pretreatment lymphocyte to monocyte ratio predicts clinical outcome for patients with hepatocellular carcinoma: A meta-analysis
Authors: Song Wei , Tian Chuan , Wang Kai , Zhang Run-jin , Zou Shu-bing 
Published: April 2017

AbstractThe lymphocyte-to-monocyte ratio (LMR) has been reported to predict clinical outcomes in multiple malignancies. The aim of this study was to assess the prognostic role of pretreatment LMR in hepatocellular carcinoma (HCC). A total of seven studies comprising 2,738 patients were included in the meta-analysis. Pooled results showed that elevated LMR was significantly associated with increased overall survival (OS) (HR: 0.31, 95% CI: 0.20–0.47, p < 0.001), disease-free survival (DFS)/recurrence-free survival (RFS) (HR: 0.57, 95% CI: 0.49–0.67, p < 0.001). The favorable prognostic impact of high LMR on OS was observed in all subgroup with different sample size, type of publication, NOS score, and the cut-off value of LMR. In addition, low LMR was significantly correlated with TNM stage and BCLC stage. We therefore conclude that elevated pretreatment LMR could be a favorable prognostic factor for clinical outcomes in patients with HCC.