bluuebunny/crossref_metadata_2025_split huggingface dataset:
Photoinhibition of seed germination: occurrence, ecology and phylogeny
Authors: Carta Angelino , Skourti Evangelia , Mattana Efisio , Vandelook Filip , Thanos Costas A. 
Published: May 2017

AbstractLight conditions provide important information about the best time and place for seedling establishment. Photoinhibition of seed germination (PISG), defined as the partial or complete suppression of germination under white light, has been interpreted as a physiological adaptation to avoid germination at or near the soil surface. This review is the first report of an all-inclusive, fully quantitative analysis of PISG in seed plants. Pertinent data available from the published literature for 301 taxa from 59 families and 27 orders were assessed. The association of PISG with several plant and seed traits allowed us to consider the adaptive significance of PISG in relation to plant life histories and the natural environments. As no gymnosperm has been found to be truly photoinhibited, it seems that PISG is apomorphic to flowering plants (especially monocots). Seeds of most taxa with PISG have a dark colour and intermediate mass, mostly in the range 1 to 27 mg. PISG is absent from humid tropical regions and from cold climates, but it is strongly associated with open, disturbed and dry habitats. An intriguing implication of PISG is the formation of a soil-surface seed bank. Taken together, these results clearly indicate that PISG is a physiological adaptation to avoid germination on the soil surface, where conditions are not suitable for seedling establishment. PISG is probably much more frequent in seed plants than previously thought. Thus, laboratory experiments should be conducted under well-characterized light and dark conditions.
Dietary salt intake in the Australian population
Authors: Santos Joseph Alvin , Webster Jacqui , Land Mary-Anne , Flood Victoria , Chalmers John , Woodward Mark , Neal Bruce , Petersen Kristina S 
Published: May 2017

AbstractObjectiveTo update the estimate of mean salt intake for the Australian population made by the Australian Health Survey (AHS).DesignA secondary analysis of the data collected in a cross-sectional survey was conducted. Estimates of salt intake were made in Lithgow using the 24 h diet recall methodology employed by the AHS as well as using 24 h urine collections. The data from the Lithgow sample were age- and sex-weighted, to provide estimates of daily salt intake for the Australian population based upon (i) the diet recall data and (ii) the 24 h urine samples.SettingLithgow, New South Wales, Australia.SubjectsIndividuals aged ≥20 years residing in Lithgow and listed on the 2009 federal electoral roll.ResultsMean (95 % CI) salt intake estimated from the 24 h diet recalls was 6·4 (6·2, 6·7) g/d for the Lithgow population compared with a corresponding figure of 6·2 g/d for the Australian population derived from the AHS. The corresponding estimate of salt intake for Lithgow adults based upon the 24 h urine collections was 9·0 (8·6, 9·4) g/d. When the age- and sex-specific estimates of salt intake obtained from the 24 h urine collections in the Lithgow sample were weighted using Australian census data, estimated salt intake for the Australian population was 9·0 (8·6, 9·5) g/d. Further adjustment for non-urinary Na excretion made the best estimate of daily salt intake for both Lithgow and Australia about 9·9 g/d.ConclusionsThe dietary recall method used by the AHS likely substantially underestimated mean population salt consumption in Australia.
Zinc is a potent and specific inhibitor of IFN-λ3 signalling
Authors: Read Scott A. , O’Connor Kate S. , Suppiah Vijay , Ahlenstiel Chantelle L. E. , Obeid Stephanie , Cook Kristina M. , Cunningham Anthony , Douglas Mark W. , Hogg Philip J. , Booth David , George Jacob , Ahlenstiel Golo 
Published: May 2017

AbstractLambda interferons (IFNL, IFN-λ) are pro-inflammatory cytokines important in acute and chronic viral infection. Single-nucleotide polymorphisms rs12979860 and rs8099917 within the IFNL gene locus predict hepatitis C virus (HCV) clearance, as well as inflammation and fibrosis progression in viral and non-viral liver disease. The underlying mechanism, however, is not defined. Here we show that the rs12979860 CC genotype correlates with increased hepatic metallothionein expression through increased systemic zinc levels. Zinc interferes with IFN-λ3 binding to IFNL receptor 1 (IFNLR1), resulting in decreased antiviral activity and increased viral replication (HCV, influenza) in vitro. HCV patients with high zinc levels have low hepatocyte antiviral and inflammatory gene expression and high viral loads, confirming the inhibitory role of zinc in vivo. We provide the first evidence that zinc can act as a potent and specific inhibitor of IFN-λ3 signalling and highlight its potential as a target of therapeutic intervention for IFN-λ3-mediated chronic disease.
The cohesin-like RecN protein stimulates RecA-mediated recombinational repair of DNA double-strand breaks
Authors: Uranga Lee A. , Reyes Emigdio D. , Patidar Praveen L. , Redman Lindsay N. , Lusetti Shelley L. 
Published: May 2017

AbstractRecN is a cohesin-like protein involved in DNA double-strand break repair in bacteria. The RecA recombinase functions to mediate repair via homologous DNA strand invasion to form D-loops. Here we provide evidence that the RecN protein stimulates the DNA strand invasion step of RecA-mediated recombinational DNA repair. The intermolecular DNA tethering activity of RecN protein described previously cannot fully explain this novel activity since stimulation of RecA function is species-specific and requires RecN ATP hydrolysis. Further, DNA-bound RecA protein increases the rate of ATP hydrolysis catalysed by RecN during the DNA pairing reaction. DNA-dependent RecN ATPase kinetics are affected by RecA protein in a manner suggesting a specific order of protein–DNA assembly, with RecN acting after RecA binds DNA. We present a model for RecN function that includes presynaptic stimulation of the bacterial repair pathway perhaps by contributing to the RecA homology search before ternary complex formation.
Picocyanobacteria and deep-ocean fluorescent dissolved organic matter share similar optical properties
Authors: Zhao Zhao , Gonsior Michael , Luek Jenna , Timko Stephen , Ianiri Hope , Hertkorn Norbert , Schmitt-Kopplin Philippe , Fang Xiaoting , Zeng Qinglu , Jiao Nianzhi , Chen Feng 
Published: May 2017

AbstractMarine chromophoric dissolved organic matter (CDOM) and its related fluorescent components (FDOM), which are widely distributed but highly photobleached in the surface ocean, are critical in regulating light attenuation in the ocean. However, the origins of marine FDOM are still under investigation. Here we show that cultured picocyanobacteria, Synechococcus and Prochlorococcus, release FDOM that closely match the typical fluorescent signals found in oceanic environments. Picocyanobacterial FDOM also shows comparable apparent fluorescent quantum yields and undergoes similar photo-degradation behaviour when compared with deep-ocean FDOM, further strengthening the similarity between them. Ultrahigh-resolution mass spectrometry (MS) and nuclear magnetic resonance spectroscopy reveal abundant nitrogen-containing compounds in Synechococcus DOM, which may originate from degradation products of the fluorescent phycobilin pigments. Given the importance of picocyanobacteria in the global carbon cycle, our results indicate that picocyanobacteria are likely to be important sources of marine autochthonous FDOM, which may accumulate in the deep ocean.
Global perturbation of organic carbon cycling by river damming
Authors: Maavara Taylor , Lauerwald Ronny , Regnier Pierre , Van Cappellen Philippe 
Published: May 2017

AbstractThe damming of rivers represents one of the most far-reaching human modifications of the flows of water and associated matter from land to sea. Dam reservoirs are hotspots of sediment accumulation, primary productivity (P) and carbon mineralization (R) along the river continuum. Here we show that for the period 1970–2030, global carbon mineralization in reservoirs exceeds carbon fixation (P<R); the global P/R ratio, however, varies significantly, from 0.20 to 0.58 because of the changing age distribution of dams. We further estimate that at the start of the twenty-first century, in-reservoir burial plus mineralization eliminated 4.0±0.9 Tmol per year (48±11 Tg C per year) or 13% of total organic carbon (OC) carried by rivers to the oceans. Because of the ongoing boom in dam building, in particular in emerging economies, this value could rise to 6.9±1.5 Tmol per year (83±18 Tg C per year) or 19% by 2030.
Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions
Authors: Kocman Vojč , Plavec Janez 
Published: May 2017

AbstractHere we describe AGCGA-quadruplexes, an unexpected addition to the well-known tetrahelical families, G-quadruplexes and i-motifs, that have been a focus of intense research due to their potential biological impact in G- and C-rich DNA regions, respectively. High-resolution structures determined by solution-state nuclear magnetic resonance (NMR) spectroscopy demonstrate that AGCGA-quadruplexes comprise four 5′-AGCGA-3′ tracts and are stabilized by G-A and G-C base pairs forming GAGA- and GCGC-quartets, respectively. Residues in the core of the structure are connected with edge-type loops. Sequences of alternating 5′-AGCGA-3′ and 5′-GGG-3′ repeats could be expected to form G-quadruplexes, but are shown herein to form AGCGA-quadruplexes instead. Unique structural features of AGCGA-quadruplexes together with lower sensitivity to cation and pH variation imply their potential biological relevance in regulatory regions of genes responsible for basic cellular processes that are related to neurological disorders, cancer and abnormalities in bone and cartilage development.
Behavioural individuality in clonal fish arises despite near-identical rearing conditions
Authors: Bierbach David , Laskowski Kate L. , Wolf Max 
Published: May 2017

AbstractBehavioural individuality is thought to be caused by differences in genes and/or environmental conditions. Therefore, if these sources of variation are removed, individuals are predicted to develop similar phenotypes lacking repeatable individual variation. Moreover, even among genetically identical individuals, direct social interactions are predicted to be a powerful factor shaping the development of individuality. We use tightly controlled ontogenetic experiments with clonal fish, the Amazon molly (Poecilia formosa), to test whether near-identical rearing conditions and lack of social contact dampen individuality. In sharp contrast to our predictions, we find that (i) substantial individual variation in behaviour emerges among genetically identical individuals isolated directly after birth into highly standardized environments and (ii) increasing levels of social experience during ontogeny do not affect levels of individual behavioural variation. In contrast to the current research paradigm, which focuses on genes and/or environmental drivers, our findings suggest that individuality might be an inevitable and potentially unpredictable outcome of development.
Tailoring spin defects in diamond by lattice charging
Authors: Fávaro de Oliveira Felipe , Antonov Denis , Wang Ya , Neumann Philipp , Momenzadeh Seyed Ali , Häußermann Timo , Pasquarelli Alberto , Denisenko Andrej , Wrachtrup Jörg 
Published: May 2017

AbstractAtomic-size spin defects in solids are unique quantum systems. Most applications require nanometre positioning accuracy, which is typically achieved by low-energy ion implantation. A drawback of this technique is the significant residual lattice damage, which degrades the performance of spins in quantum applications. Here we show that the charge state of implantation-induced defects drastically influences the formation of lattice defects during thermal annealing. Charging of vacancies at, for example, nitrogen implantation sites suppresses the formation of vacancy complexes, resulting in tenfold-improved spin coherence times and twofold-improved formation yield of nitrogen-vacancy centres in diamond. This is achieved by confining implantation defects into the space-charge layer of free carriers generated by a boron-doped diamond structure. By combining these results with numerical calculations, we arrive at a quantitative understanding of the formation and dynamics of the implanted spin defects. These results could improve engineering of quantum devices using solid-state systems.
Optimizing radiotherapy protocols using computer automata to model tumour cell death as a function of oxygen diffusion processes
Authors: Paul-Gilloteaux Perrine , Potiron Vincent , Delpon Grégory , Supiot Stéphane , Chiavassa Sophie , Paris François , Costes Sylvain V. 
Published: May 2017

AbstractThe concept of hypofractionation is gaining momentum in radiation oncology centres, enabled by recent advances in radiotherapy apparatus. The gain of efficacy of this innovative treatment must be defined. We present a computer model based on translational murine data for in silico testing and optimization of various radiotherapy protocols with respect to tumour resistance and the microenvironment heterogeneity. This model combines automata approaches with image processing algorithms to simulate the cellular response of tumours exposed to ionizing radiation, modelling the alteration of oxygen permeabilization in blood vessels against repeated doses, and introducing mitotic catastrophe (as opposed to arbitrary delayed cell-death) as a means of modelling radiation-induced cell death. Published data describing cell death in vitro as well as tumour oxygenation in vivo are used to inform parameters. Our model is validated by comparing simulations to in vivo data obtained from the radiation treatment of mice transplanted with human prostate tumours. We then predict the efficacy of untested hypofractionation protocols, hypothesizing that tumour control can be optimized by adjusting daily radiation dosage as a function of the degree of hypoxia in the tumour environment. Further biological refinement of this tool will permit the rapid development of more sophisticated strategies for radiotherapy.
Fipronil-induced enantioselective developmental toxicity to zebrafish embryo-larvae involves changes in DNA methylation
Authors: Qian Yi , Wang Cui , Wang Jinghua , Zhang Xiaofeng , Zhou Zhiqiang , Zhao Meirong , Lu Chensheng 
Published: May 2017

AbstractEnantioselectivity in the aquatic toxicity of chiral pesticides has been widely investigated, while the molecular mechanisms remain unclear. Thus far, few studies has focused on genomic expression related to selective toxicity in chiral pesticide, nor on epigenetic changes, such as DNA methylation. Here, we used fipronil, a broad-spectrum insecticide, as a model chemical to probe its enantioselective toxicity in embryo development. Our results showed that S-(+)-fipronil caused severer developmental toxicity in embryos. The MeDIP-Seq analysis demonstrated that S-(+)-fipronil dysregulated a higher level of genomic DNA methylation than R-(−)-fipronil. Gene Ontology analysis revealed that S-(+)-fipronil caused more differentially methylated genes that are involved in developmental processes. Compared with R-(−)-fipronil, S-(+)-fipronil significantly disrupted 7 signaling pathways (i.e., mitogen-activated protein kinases, tight junctions, focal adhesion, transforming growth factor-β, vascular smooth muscle contraction, and the hedgehog and Wnt signaling pathways) by hyper-methylation of developmentally related genes, which further induced the downregulation of those genes. Together, these data suggest that differences in DNA methylation may partly explain the enantioselectivity of fipronil to zebrafish embryos. The application of epigenetics to investigate the enantioselective toxicity mechanism of chiral chemicals would provide a further understanding of their stereoselectivity biological effects.
Caffeic Acid Attenuates Diabetic Kidney Disease via Modulation of Autophagy in a High-Fat Diet/Streptozotocin- Induced Diabetic Rat
Authors: Matboli Marwa , Eissa Sanaa , Ibrahim Doaa , Hegazy Marwa G. A. , Imam Shalabia S. , Habib Eman K. 
Published: May 2017

AbstractThe aim of this study is to evaluate the anti-diabetic nephropathy effect of Caffeic acid and to prove our hypothesis for its mechanism of action that it may occur by reactivation of autophagy pathway via suppression of autophagy regulatory miRNAs. In vivo, high-fat diet and streptozotocin-induced (HFD-STZ) diabetic rats were treated with Caffeic acid once per day for 12 weeks before and after development of diabetic nephropathy. Blood and urine biochemical parameters, autophagy transcripts and their epigenetic regulators together with renal tissue morphology were investigated. In diabetic rats, Caffeic acid intake, caused improvement in albumin excretion,blood glucose, reduced renal mesangial matrix extension with increased vacuolation and reappearance of autophagosomes. Meanwhile, it resulted in autophagy genes up-regulation [RB 1-inducible coiled coil protein (RB1CC1), Microtubule-associated proteins 1A/1B light chain 3(MAP1LC3B), Autophagy related gene (ATG-12),] with simultaneous reduction in their epigenetic regulators; miRNA-133b, −342 and 30a, respectively. These above mentioned effects were more significant in the diabetic nephropathy Caffeic treated rats than in the prophylactic group. Based on our results we postulated that caffeic acid modulates autophagy pathway through inhibition of autophagy regulatory miRNAs, that could explain its curative properties against diabetic kidney disease.
The long non-coding RNA LINC00152 is essential for cell cycle progression through mitosis in HeLa cells
Authors: Nötzold Linda , Frank Lukas , Gandhi Minakshi , Polycarpou-Schwarz Maria , Groß Matthias , Gunkel Manuel , Beil Nina , Erfle Holger , Harder Nathalie , Rohr Karl , Trendel Jakob , Krijgsveld Jeroen , Longerich Thomas , Schirmacher Peter , Boutros Michael , Erhardt Sylvia , Diederichs Sven 
Published: May 2017

AbstractIn recent years, long non-coding RNA (lncRNA) research has identified essential roles of these transcripts in virtually all physiological cellular processes including tumorigenesis, but their functions and molecular mechanisms are poorly understood. In this study, we performed a high-throughput siRNA screen targeting 638 lncRNAs deregulated in cancer entities to analyse their impact on cell division by using time-lapse microscopy. We identified 26 lncRNAs affecting cell morphology and cell cycle including LINC00152. This transcript was ubiquitously expressed in many human cell lines and its RNA levels were significantly upregulated in lung, liver and breast cancer tissues. A comprehensive sequence analysis of LINC00152 revealed a highly similar paralog annotated as MIR4435-2HG and several splice variants of both transcripts. The shortest and most abundant isoform preferentially localized to the cytoplasm. Cells depleted of LINC00152 arrested in prometaphase of mitosis and showed reduced cell viability. In RNA affinity purification (RAP) studies, LINC00152 interacted with a network of proteins that were associated with M phase of the cell cycle. In summary, we provide new insights into the properties and biological function of LINC00152 suggesting that this transcript is crucial for cell cycle progression through mitosis and thus, could act as a non-coding oncogene.
Effects of hMASP-2 on the formation of BCG infection-induced granuloma in the lungs of BALB/c mice
Authors: Xu Xiaoying , Lu Xiaoling , Dong Xingfang , Luo Yanping , Wang Qian , Liu Xun , Fu Jie , Zhang Yuan , Zhu Bingdong , Ma Xingming 
Published: May 2017

AbstractTuberculosis, caused by Mycobacterium tuberculosis, affects the functions of the lung and causes high morbidity and mortality rates worldwide. MASP-2 is an executioner enzyme, which plays an essential role in the activation of lectin pathway. In our previous studies, the MASP-2 played a dual role in promoting the progress of lesions in BCG-infected rabbit skin models. However, the really effects of MASP-2 on tuberculosis are unknown. The aim of this study was to investigate the effects of MASP-2 in granuloma formation with BCG-infected mice. Compared to the control group, rAd-hMASP-2 treated group showed increasing in survival rate of BCG-infected mice (P = 0.042), and decreasing of bacteria loads (P = 0.005) in the lung tissue. MASP-2 displayed a protective efficacy in BCG-infected mice, which promoted the activation and recruitment of macrophages and lymphocytes to the granuloma. Moreover, the data obtained from the ELISA and RT-PCR demonstrated that mRNA expression for IL-6, CCL12, CCL2 and cytokines of IFN-γ, TNF-α in lung were significantly elevated by treatment of rAd-hMASP-2. Those findings provided an evidence that MASP-2 may be as a newly immunomodulatory in targeting granuloma formation, which displayed a potential protective role in control of tuberculosis.
Tea-induced improvement of endothelial function in humans: No role for epigallocatechin gallate (EGCG)
Authors: Lorenz Mario , Rauhut Franziska , Hofer Christine , Gwosc Stefanie , Müller Eda , Praeger Damaris , Zimmermann Benno F. , Wernecke Klaus-Dieter , Baumann Gert , Stangl Karl , Stangl Verena 
Published: May 2017

AbstractConsumption of tea is inversely associated with cardiovascular diseases. However, the active compound(s) responsible for the protective effects of tea are unknown. Although many favorable cardiovascular effects in vitro are mediated by epigallocatechin gallate (EGCG), its contribution to the beneficial effects of tea in vivo remains unresolved. In a randomised crossover study, a single dose of 200 mg EGCG was applied in three different formulas (as green tea beverage, green tea extract (GTE), and isolated EGCG) to 50 healthy men. Flow-mediated dilation (FMD) and endothelial-independent nitro-mediated dilation (NMD) was measured before and two hours after ingestion. Plasma levels of tea compounds were determined after each intervention and correlated with FMD. FMD significantly improved after consumption of green tea containing 200 mg EGCG (p < 0.01). However, GTE and EGCG had no significant effect on FMD. NMD did not significantly differ between interventions. EGCG plasma levels were highest after administration of EGCG and lowest after consumption of green tea. Plasma levels of caffeine increased after green tea consumption. The results show that EGCG is most likely not involved in improvement of flow-mediated dilation by green tea. Instead, other tea compounds, metabolites or combinations thereof may play a role.
Discrete photoelectrodes with dyes having different absorption wavelengths for efficient cobalt-based tandem dye-sensitised solar cells
Authors: Ho Phuong , Thogiti Suresh , Lee Yong Hui , Kim Jae Hong 
Published: May 2017

AbstractA pn-tandem dye-sensitised solar cell (pn-DSSC) employing a set of sensitisers with complementary absorption spectra and a less-corrosive cobalt-based electrolyte is presented. We applied three organic sensitisers (denoted C343, DCBZ, and SQ) featuring different absorption wavelengths for the p-DSSC, while keeping the n-DSSC sensitiser (denoted DCA10CN2) constant. Characterisation of the Co+2/+3-based DSSC devices revealed that SQ dye, with a longer absorption wavelength, showed broader spectra and increased photocurrent activity in the visible and near-infrared region compared to the other two devices with C343 and DCBZ in the pn-DSSCs. As a result, the short-circuit current density increased significantly to 4.00 mA cm−2, and the devices displayed overall power conversion efficiencies of as high as 1.41%, which is comparable to that of the best pn-DSSCs in the literature. Our results demonstrate that complementary absorption between the two photoelectrodes is important for enhancing the photovoltaic performance of pn-DSSCs.