bluuebunny/crossref_metadata_2025_split huggingface dataset:
Detection of the cytochrome b mutation G143A in Irish Rhynchosporium commune populations using targeted 454 sequencing
Authors: Phelan Sinead , Barthe Marie‐Sophie , Tobie Camille , Kildea Steven 
Published: September 2016

AbstractBACKGROUNDRhynchosporium commune is a major fungal pathogen of barley crops, and the application of fungicides, such as quinone outside inhibitors (QoIs), plays an important role in crop disease control. The genetic mechanisms linked to QoI resistance have been identified in the cytochrome b gene, with QoI resistance conferred by the G143A substitution. The objective of this study was to develop a high‐throughput molecular assay to detect and identify mutations associated with QoI resistance within the Irish R. commune population.RESULTSLeaf lesions of R. commune sampled from 74 sites during 2009–2014 and isolates from 2006 and 2007 were screened for non‐synonymous mutations of the cytochrome b gene using 454 targeted sequencing. The presence of the G143A substitution was confirmed in R. commune samples at one site in 2013 and at four sites in 2014; however, the frequency of the substitution in these samples was low (2–18%). The 454 sequencing results were confirmed by PCR‐RFLP and Sanger sequencing.CONCLUSIONThe molecular assay that has been applied to this monitoring programme has shown that the application of 454 next‐generation sequencing offers the potential for high throughput and accurate characterisation of non‐synonymous mutations associated with fungicide resistance in a crop pathogen. © 2016 Society of Chemical Industry
Diffusion-Weighted Magnetic Resonance Imaging of Cholesteatoma Using PROPELLER at 1.5T: A Single-Centre Retrospective Study
Authors: Clarke Sharon E. , Mistry Dipan , AlThubaiti Talal , Khan M. Naeem , Morris David , Bance Manohar 
Published: September 2016

Purpose The purpose of this study was to evaluate the sensitivity, specificity, and positive and negative predictive values of the diffusion-weighted periodically rotated overlapping parallel lines with enhanced reconstruction (PROPELLER) technique in the detection of cholesteatoma at our institution with surgical confirmation in all cases. Methods A retrospective review of 21 consecutive patients who underwent diffusion-weighted PROPELLER magnetic resonance imaging (MRI) on a 1.5T MRI scanner prior to primary or revision/second-look surgery for suspected cholesteatoma from 2009-2012 was performed. Results Diffusion-weighted PROPELLER had a sensitivity of 75%, specificity of 60%, positive predictive value of 86%, and negative predictive value of 43%. In the 15 patients for whom the presence or absence of cholesteatoma was correctly predicted, there were 2 cases where the reported locations of diffusion restriction did not correspond to the location of the cholesteatoma observed at surgery. Conclusion On the basis of our retrospective study, we conclude that diffusion-weighted PROPELLER MRI is not sufficiently accurate to replace second look surgery at our institution.
Accretion Onto the Milky Way: The Smith Cloud
Authors: Lockman Felix J. 
Published: September 2016

AbstractActive gas accretion onto the Milky Way is observed in an object called the Smith Cloud, which contains several million solar masses of neutral and warm ionized gas and is currently losing material to the Milky Way, adding angular momentum to the disk. It is several kpc in size and its tip lies 2 kpc below the Galactic plane. It appears to have no stellar counterpart, but could contain a stellar population like that of the dwarf galaxy Leo P. There are suggestions that its existence and survival require that it be embedded in a dark matter halo of a few 108 solar masses.
Resolving the Transition from Molecular to Atomic at 1/5 Solar Metallicity in the Small Magellanic Cloud
Authors: Jameson Katherine E. , Bolatto Alberto D. , Wolfire Mark , Rubio Monica , Camus Rodrigo Herrera ,   the HS Collaboration
Published: September 2016

AbstractAt a distance of 61 kpc, the Small Magellanic Cloud (SMC) affords an absolutely unique view of the low metallicity star-forming interstellar medium, providing the nearest laboratory to study processes relevant to star formation at high redshifts. We present new ALMA 7m-array maps of CO and 12CO (2-1) for one of the four observed regions in the Southwest Bar of the SMC. These maps are the first high-resolution (~6″ ~ 1.7 pc) images of CO in a molecular cloud at 1/5 Solar metallicity. We show the structure of photodissociation regions for the first time at 1/5 Solar metallicity by combining the new ALMA data with Herschel maps of [C ii] and [O i]. We present preliminary evidence that there is extended, faint 12CO (2-1) emission near where we expect the Hi-to-H2 transition. We also compare our data to the low metallicity 3D simulations by Glover & Mac Low (2011) and Shetty et al. (2011).
Astrochemistry in external galaxies: how to use molecules as probes of their physical conditions
Authors: Viti Serena 
Published: September 2016

AbstractIt is now well established that chemistry in external galaxies is rich and complex. In this review I will explore whether one can use molecular emissions to determine their physical conditions. There are several considerations to bear in mind when using molecular emission, and in particular molecular ratios, to determine the densities, temperatures and energetics of a galaxy, which I will briefly summarise here. I will then present an example of a study that uses multiple chemical and radiative transfer analyses in order to tackle the too often neglected ‘degeneracies’ implicit in the interpretation of molecular ratios and show that only via such analyses combined with multi-species and multi-lines high spatial resolution data one can truly make molecules into powerful diagnostics of the evolution and distribution of molecular gas.
High-J CO Intensity Measurements for Galaxies Observed by the Herschel FTS
Authors: Kamenetzky Julia , Rangwala Naseem , Glenn Jason , Maloney Philip , Conley Alex 
Published: September 2016

AbstractMolecular gas is the raw material for star formation and is commonly traced by the carbon monoxide (CO) molecule. The atmosphere blocks all but the lowest-J transitions of CO for observatories on the ground, but the launch of the Herschel Space Observatory revealed the CO emission of nearby galaxies from J = 4−3 to J = 13−12. Herschel showed that mid- and high-J CO lines in nearby galaxies are emitted from warm gas, accounting for approximately 10% of the molecular mass, but the majority of the CO luminosity. The energy budget of this warm, highly-excited gas is a significant window into the feedback interactions among molecular gas, star formation, and galaxy evolution. Likely, mechanical heating is required to explain the excitation. Such gas has also been observed in star forming regions within our galaxy.We have examined all ~300 spectra of galaxies from the Herschel Fourier Transform Spectrometer and measured line fluxes or upper limits for the CO J = 4−3 to J = 13−12, [CI], and [NII] 205 micron lines in ~200 galaxies, taking systematic effects of the FTS into account. We will present our line fitting method, illustrate trends available so far in this large sample, and preview the full 2-component radiative transfer likelihood modeling of the CO emission using an illustrative sample of 20 galaxies, including comparisons to well-resolved galactic regions. This work is a comprehensive study of mid- and high-J CO emission among a variety of galaxy types, and can be used as a resource for future (sub)millimeter studies of galaxies with ground-based instruments.
Feedback Regulated Turbulence, Magnetic Fields, and Star Formation Rates in Galactic Disks
Authors: Kim Chang-Goo , Ostriker Eve C. 
Published: September 2016

AbstractWe use three-dimensional magnetohydrodynamic (MHD) simulations to investigate the quasi-equilibrium states of galactic disks regulated by star formation feedback. We incorporate effects from massive-star feedback via time-varying heating rates and supernova (SN) explosions. We find that the disks in our simulations rapidly approach a quasi-steady state that satisfies vertical dynamical equilibrium. The star formation rate (SFR) surface density self-adjusts to provide the total momentum flux (pressure) in the vertical direction that matches the weight of the gas. We quantify feedback efficiency by measuring feedback yields, ηc≡ Pc/ΣSFR (in suitable units), for each pressure component. The turbulent and thermal feedback yields are the same for HD and MHD simulations, ηth ~ 1 and ηturb ~ 4, consistent with the theoretical expectations. In MHD simulations, turbulent magnetic fields are rapidly generated by turbulence, and saturate at a level corresponding to ηmag,t ~ 1. The presence of magnetic fields enhances the total feedback yield and therefore reduces the SFR, since the same vertical support can be supplied at a smaller SFR. We suggest further numerical calibrations and observational tests in terms of the feedback yields.
Properties of interstellar filaments as derived from Herschel, Planck, and molecular line observations
Authors: Arzoumanian Doris , André Philippe , Boulanger François 
Published: September 2016

AbstractRecent Herschel and Planck observations of submillimeter dust emission revealed the omnipresence of filamentary structures in the interstellar medium (ISM). The ubiquity of filaments in quiescent clouds as well as in star-forming regions indicates that the formation of filamentary structures is a natural product of the physics at play in the magnetized turbulent cold ISM. An analysis of more than 270 filaments observed with Herschel in 8 regions of the Gould Belt, shows that interstellar filaments are characterized by a narrow distribution of central width sharply peaked at ~0.1 pc, while they span a wide column density range. Molecular line observations of a sample of these filaments show evidence of an increase in the velocity dispersion of dense filaments with column density, suggesting an evolution in mass per unit length due to accretion of surrounding material onto these star-forming filaments. The analyses of Planck dust polarization observations show that both the mean magnetic field and its fluctuations along the filaments are different from those of their surrounding clouds. This points to a coupling between the matter and the $\vec{B}$-field in the filament formation process. These observational results, derived from dust and gas tracers in total and polarized intensity, set strong constraints on our understanding of the formation and evolution of filaments in the ISM. They provide important clues on the initial conditions of the star formation process along interstellar filaments.
An Observational Perspective of the IMF: Progress and Challenges
Authors: Offner Stella S. R. 
Published: September 2016

AbstractThe stellar initial mass function (IMF) is a fundamental astrophysical quantity that impacts a wide range of astrophysical problems from heavy element distribution to galactic evolution to planetary system formation. However, the origin and universality of the IMF are hotly debated both observationally and theoretically. I review recent observations of the IMF across a variety of environments. These suggest the IMF is surprisingly invariant between star-forming regions, star clusters, and spiral galaxies but that it may also vary under extreme conditions, including within the Galactic center and early type galaxies.
Numerical simulation of star formation in filamentary dark molecular clouds
Authors: Li Pak Shing , Klein Richard I. , McKee Christopher F. 
Published: September 2016

AbstractNumerical simulations of star formation faces challenges including the huge spatial dynamic range and the presence of multiply coupled highly non-linear physics, such as magnetic field, supersonic turbulence, gravitation, radiation and protostellar outflow feedback. We present in this symposium our latest high resolution adaptive mesh refinement numerical simulations of the formation of filamentary dark molecular clouds from 4.55 pc size scale down to the formation of a protostellar cluster with maximum resolution at 28 AU. The physical properties of the long braided filamentary dark cloud formed in the simulation, the magnetic field properties of the cloud clumps, and the protostellar mass function in the simulations match well with the latest observations.
From disks to planets: observational insights
Authors: Isella Andrea 
Published: September 2016

AbstractThe unprecedented sensitivity and imaging capabilities offered by the Atacama Large Millimeter Array (ALMA) are transforming our understanding of protoplanetary disks and, hence, of planet formation. In this brief chapter, I first discuss the main results and caveats related to the measurement of the mass of solids in protoplanetary disks based on millimeter-wave observations. I then present a recent analysis of the ALMA observations of the HL Tau disk, which suggests that the observed circular rings might be due to the tidal interaction between Saturn mass planets and the circumstellar material. In the conclusion, I argue that the existing observations of protoplanetary disks suggest that planets might form very early on, perhaps at the same time as the formation of the disk itself.
Formation of star clusters: Models and simulations
Authors: Myers Philip C. 
Published: September 2016

AbstractRecent progress is reviewed in describing the physical processes of star cluster formation, from the viewpoint of theoretical models and numerical simulations. In many studies, supersonic turbulent flows structure the gas into a network of clumps, filaments, and cores. Self-gravity drives star formation, moderated by turbulence, magnetic fields, and stellar feedback. Recent models and simulations describe the core mass function, the protostar mass function, and the star-formation rate. Several simulations indicate similar protostar birthrates, a mass advantage for firstborn protostars, and accretion rates that are superthermal and nearly constant. Recently observed core-filament systems with sonic line widths and parsec lengths present challenges for turbulent models.
A multi-wavelength classification system for the evolution of star clusters
Authors: Whitmore Bradley C. , Brogan Crystal , Chandar Rupali , Evans Aaron , Hibbard John , Johnson Kelsey , Leroy Adam , Privon George , Remijan Anthony , Sheth Kartik 
Published: September 2016

AbstractThe availability of high spatial resolution molecular gas observations from ALMA, and similar resolution observations in the radio continuum using the VLA, is providing the opportunity to make comparisons with specific features seen in optical observations more directly than in the past. Using our ALMA observations of the Antennae galaxies as a springboard, we have compared the locations of small-scale CO (3−2) features with a variety of multi-wavelength observations, in particular optical and near-infrared imaging using both broad (UBVI) and narrow-band data (Hαand Paβ) taken with the HST, and radio (3.6 cm) continuum observations taken with the VLA. This comparison leads to the development of an evolutionary classification system which provides a framework for studying the sequence of star cluster formation and evolution, from diffuse Giant Molecular Clouds (GMCs), to proto, embedded, emerging, young, and intermediate/old star clusters. Using this evolutionary framework, we estimate the maximum age range of clusters formed in a single GMC is approximately 10 Myr. This suggests that the molecular gas is removed over this timescale, resulting in the cessation of star formation and the destruction of the GMC within a radius of about 200 pc.
HOBYS and W43-HERO: Two more steps toward a Galaxy-wide understanding of high-mass star formation
Authors: Motte Frédérique , Bontemps Sylvain , Tigé Jérémy 
Published: September 2016

AbstractThe Herschel/HOBYS key program allows to statistically study the formation of 10−20 M⊙ stars. The IRAM/W43-HERO large program is itself dedicated to the much more extreme W43 molecular complex, which forms stars up to 50 M⊙. Both reveal high-density cloud filaments of several pc3, which are forming clusters of OB-type stars. Given their activity, these so-called mini-starburst cloud ridges could be seen as “miniature and instant models” of starburst galaxies. Both surveys also strongly suggest that high-mass prestellar cores do not exist, in agreement with the dynamical formation of cloud ridges. The HOBYS and W43 surveys are necessary steps towards Galaxy-wide studies of high-mass star formation.
Comparison of Low-Mass and High-Mass Star Formation
Authors: Tan Jonathan C. 
Published: September 2016

AbstractI review theoretical models of star formation and how they apply across the stellar mass spectrum. Several distinct theories are under active study for massive star formation, especiallyTurbulent Core Accretion,Competitive AccretionandProtostellar Mergers, leading to distinct observational predictions. These include the types of initial conditions, the structure of infall envelopes, disks and outflows, and the relation of massive star formation to star cluster formation. Even for Core Accretion models, there are several major uncertainties related to the timescale of collapse, the relative importance of different processes for preventing fragmentation in massive cores, and the nature of disks and outflows. I end by discussing some recent observational results that are helping to improve our understanding of these processes.
Star Formation Thresholds: The View from Inside the Galaxy
Authors: Di Francesco James 
Published: September 2016

AbstractWe explore the relationship between the total gas surface density and star formation rate surface density, a.k.a., the “Kennicutt-Schmidt relation,” in a Galactic context. Specifically, we probe the origins of thresholds in the behaviour of the K-S relation at 10 M⊙ pc−2 and 100-200 M⊙ pc−2 using images from the Herschel Hi-GAL and Gould Belt surveys. In both cases, pervasive filamentary structures are seen, possibly due to turbulent motions. The Hi-GAL image supports the view that at ~10 M⊙ pc−2 gas becomes molecular, leading to the formation of clouds that harbour star formation. The GBS images suggest the 100-200 M⊙ pc−2 threshold originates from the nature of filaments being stable until a critical column density of ~160 M⊙ pc−2 is reached. Therefore, the transition between non-star-forming and star-forming gas in clouds (and galaxies) may be set universally by the dynamical properties of filaments.
Gas flows in galactic nuclei: observational constraints on BH-galaxy coevolution
Authors: García-Burillo Santiago 
Published: September 2016

AbstractGalaxy nuclei are a unique laboratory to study gas flows. Their high-resolution imaging in galactic nuclei are instrumental in the study of the fueling and feedback of star formation and nuclear activity in nearby galaxies. Several fueling mechanisms can now be confronted in detail with observations done with state-of-the-art interferometers. Furthermore, the study of gas flows in galactic nuclei can probe the feedback of activity on the interstellar medium of galaxies. Feedback action from star formation and AGN activity is invoked to prevent galaxies from becoming overly massive, but also to explain scaling laws like black hole (BH)-bulge mass correlations and the bimodal color distribution of galaxies. This close relationship between galaxies and their central supermassive BH can be described as co-evolution. There is mounting observational evidence for the existence of gas outflows in different populations of starbursts and active galaxies, a manifestation of the feedback of activity. We summarize the main results recently obtained from the observation of galactic inflows and outflows in a variety of active galaxies with current millimeter interferometers such as ALMA or the IRAM array.
High resolution ALMA observations of dense molecular medium in the central regions of active galaxies
Authors: Kohno Kotaro , Ando Ryo , Taniguchi Akio , Izumi Takuma , Tosaki Tomoka 
Published: September 2016

AbstractIn the central regions of active galaxies, dense molecular medium are exposed to various types of radiation and energy injections, such as UV, X-ray, cosmic ray, and shock dissipation. With the rapid progress of chemical models and implementation of new-generation mm/submm interferometry, we are now able to use molecules as powerful diagnostics of the physical and chemical processes in galaxies. Here we give a brief overview on the recent ALMA results to demonstrate how molecules can reveal underlying physical and chemical processes in galaxies. First, new detections of Galactic molecular absorption systems with elevated HCO/H13CO+column density ratios are reported, indicating that these molecular media are irradiated by intense UV fields. Second, we discuss the spatial distributions of various types of shock tracers including HNCO, CH3OH and SiO in NGC 253 and NGC 1068. Lastly, we provide an overview of proposed diagnostic methods of nuclear energy sources using ALMA, with an emphasis on the synergy with sensitive mid-infrared spectroscopy, which will be implemented by JWST and SPICA to disentangle the complex nature of heavily obscured galaxies across the cosmic time.
Interactions and star formation
Authors: Knapen Johan H. , Cisternas Mauricio , Querejeta Miguel 
Published: September 2016

AbstractWe investigate the influence of interactions on the star formation by studying a sample of almost 1500 of the nearest galaxies, all within a distance of ~45 Mpc. We define the massive star formation rate (SFR), as measured from far-IR emission, and the specific star formation rate (SSFR), which is the former quantity normalized by the stellar mass of the galaxy, and explore their distribution with morphological type and with stellar mass. We then calculate the relative enhancement of these quantities for each galaxy by normalizing them by the median SFR and SSFR values of individual control populations of similar non-interacting galaxies. We find that both SFR and SSFR are enhanced in interacting galaxies, and more so as the degree of interaction is higher. The increase is, however, moderate, reaching a maximum of a factor of 1.9 for the highest degree of interaction (mergers). The SFR and SSFR are enhanced statistically in the population, but in most individual interacting galaxies they are not enhanced at all. We discuss how those galaxies with the largest SFR and/or SSFR enhancement can be defined as starbursts. We argue that this study, based on a representative sample of nearby galaxies, should be used to place constraints on studies based on samples of galaxies at larger distances.
The Evolution of Gas Content and Star Formation from z=3 to z=0
Authors: Combes Francoise ,   the PHIBSS collaboration
Published: September 2016

AbstractThe cosmic star formation rate density first increases with time towards a pronounced peak 10 Gyrs ago (or z=1-2) and then slows down, dropping by more than a factor 10 since z=1. The processes at the origin of the star formation quenching are not yet well identified: either the gas is expelled by supernovae and AGN feedback, or prevented to inflow. Morphological transformation or environment effects are also invoked. Recent IRAM/NOEMA and ALMA results are reviewed about the molecular content of galaxies and its dynamics, as a function of redshift. Along the main sequence of massive star forming galaxies, the gas fraction was higher in the past (up to 80%), and galaxy disks were more unstable and more turbulent. The star formation efficiency increases with redshift, or equivalently the depletion time decreases, whatever the position of galaxies, either on the main sequence or above. Attempts have been made to determine the cosmic evolution of the H2 density, but deeper ALMA observations are needed to effectively compare with models.