bluuebunny/crossref_metadata_2025_split huggingface dataset:
Disease and Non-Battle Traumatic Injuries Evaluated by Emergency Physicians in a US Tertiary Combat Hospital
Authors: Bebarta Vikhyat S. , Mora Alejandra G. , Ng Patrick C. , Mason Phillip E. , Muck Andrew , Maddry Joseph K. 
Published: December 2017

AbstractIntroductionAnalysis of injuries during military operations has focused on those related to combat. Non-combat complaints have received less attention, despite the need for many troops to be evacuated for non-battle illnesses in Iraq. This study aims to further characterize the disease and non-battle injuries (DNBIs) seen at a tertiary combat hospital and to describe the types of procedures and medications used in the management of these cases.MethodsIn this observational study, patients were enrolled from a convenience sample with non-combat-related diseases and injuries who were evaluated in the emergency department (ED) of a US military tertiary hospital in Iraq from 2007-2008. The treating emergency physician (EP) used a data collection form to enroll patients that arrived to the ED whose injury or illness was unrelated to combat.ResultsData were gathered on 1,745 patients with a median age of 30 years; 84% of patients were male and 85% were US military personnel. The most common diagnoses evaluated in the ED were abdominal disorders, orthopedic injuries, and headache. Many cases involved intravenous access, laboratory testing, and radiographic testing. Procedures performed included electrocardiogram, lumbar puncture, and intubation.ConclusionDisease and non-battle traumatic injuries are common in a tertiary combat hospital. Emergency providers working in austere settings should have the diagnostic and procedural skills to evaluate and treat DNBIs.BebartaVS, MoraAG, NgPC, MasonPE, MuckA, MaddryJK. Disease and non-battle traumatic injuries evaluated by emergency physicians in a US tertiary combat hospital. Prehosp Disaster Med. 2018;33(1):53–57.
Angiogenesis in a 3D model containing adipose tissue stem cells and endothelial cells is mediated by canonical Wnt signaling
Authors: Cai Xiaoxiao , Xie Jing , Yao Yang , Cun Xiangzhu , Lin Shiyu , Tian Taoran , Zhu Bofeng , Lin Yunfeng 
Published: December 2017

AbstractAdipose-derived stromal cells (ASCs) have gained great attention in regenerative medicine. Progress in our understanding of adult neovascularization further suggests the potential of ASCs in promoting vascular regeneration, although the specific cues that stimulate their angiogenic behavior remain controversial. In this study, we established a three-dimensional (3D) angiogenesis model by co-culturing ASCs and endothelial cells (ECs) in collagen gel and found that ASC-EC-instructed angiogenesis was regulated by the canonical Wnt pathway. Furthermore, the angiogenesis that occurred in implants collected after injections of our collagen gel-based 3D angiogenesis model into nude mice was confirmed to be functional and also regulated by the canonical Wnt pathway. Wnt regulation of angiogenesis involving changes in vessel length, vessel density, vessel sprout, and connection numbers occurred in our system. Wnt signaling was then shown to regulate ASC-mediated paracrine signaling during angiogenesis through the nuclear translocation of β-catenin after its cytoplasmic accumulation in both ASCs and ECs. This translocation enhanced the expression of nuclear co-factor Lef-1 and cyclin D1 and activated the angiogenic transcription of vascular endothelial growth factor A (VEGFA), basic fibroblast growth factor (bFGF), and insulin-like growth factor 1 (IGF-1). The angiogenesis process in the 3D collagen model appeared to follow canonical Wnt signaling, and this model can help us understand the importance of the canonical Wnt pathway in the use of ASCs in vascular regeneration.
circHIPK2-mediated σ-1R promotes endoplasmic reticulum stress in human pulmonary fibroblasts exposed to silica
Authors: Cao Zhouli , Xiao Qingling , Dai Xiaoniu , Zhou Zewei , Jiang Rong , Cheng Yusi , Yang Xiyue , Guo Huifang , Wang Jing , Xi Zhaoqing , Yao Honghong , Chao Jie 
Published: December 2017

AbstractSilicosis is characterized by fibroblast accumulation and excessive deposition of extracellular matrix. Although the roles of SiO2-induced chemokines and cytokines released from alveolar macrophages have received significant attention, the direct effects of SiO2 on protein production and functional changes in pulmonary fibroblasts have been less extensively studied. Sigma-1 receptor, which has been associated with cell proliferation and migration in the central nervous system, is expressed in the lung, but its role in silicosis remains unknown. To elucidate the role of sigma-1 receptor in fibrosis induced by silica, both the upstream molecular mechanisms and the functional effects on cell proliferation and migration were investigated. Both molecular biological assays and pharmacological techniques, combined with functional experiments, such as migration and proliferation, were applied in human pulmonary fibroblasts from adults to analyze the molecular and functional changes induced by SiO2. SiO2 induced endoplasmic reticulum stress in association with enhanced expression of sigma-1 receptor. Endoplasmic reticulum stress promoted migration and proliferation of human pulmonary fibroblasts-adult exposed to SiO2, inducing the development of silicosis. Inhibition of sigma-1 receptor ameliorated endoplasmic reticulum stress and fibroblast functional changes induced by SiO2. circHIPK2 is involved in the regulation of sigma-1 receptor in human pulmonary fibroblasts-adult exposed to SiO2. Our study elucidated a link between SiO2-induced fibrosis and sigma-1 receptor signaling, thereby providing novel insight into the potential use of sigma-1 receptor/endoplasmic reticulum stress in the development of novel therapeutic strategies for silicosis treatment.
Negative control of the HGF/c-MET pathway by TGF-β: a new look at the regulation of stemness in glioblastoma
Authors: Papa Eleanna , Weller Michael , Weiss Tobias , Ventura Elisa , Burghardt Isabel , Szabó Emese 
Published: December 2017

AbstractMultiple target inhibition has gained considerable interest in combating drug resistance in glioblastoma, however, understanding the molecular mechanisms of crosstalk between signaling pathways and predicting responses of cancer cells to targeted interventions has remained challenging. Despite the significant role attributed to transforming growth factor (TGF)-β family and hepatocyte growth factor (HGF)/c-MET signaling in glioblastoma pathogenesis, their functional interactions have not been well characterized. Using genetic and pharmacological approaches to stimulate or antagonize the TGF-β pathway in human glioma-initiating cells (GIC), we observed that TGF-β exerts an inhibitory effect on c-MET phosphorylation. Inhibition of either mitogen-activated protein kinase (MAPK)/ extracellular signal-regulated kinase (ERK) or phosphatidylinositol 3-kinase (PI3K)/protein kinase B (PKB/AKT) signaling pathway attenuated this effect. A comparison of c-MET-driven and c-MET independent GIC models revealed that TGF-β inhibits stemness in GIC at least in part via its negative regulation of c-MET activity, suggesting that stem cell (SC) maintenance may be controlled by the balance between these two oncogenic pathways. Importantly, immunohistochemical analyses of human glioblastoma and ex vivo single-cell gene expression profiling of TGF-β and HGF confirm the negative interaction between both pathways. These novel insights into the crosstalk of two major pathogenic pathways in glioblastoma may explain some of the disappointing results when targeting either pathway alone in human glioblastoma patients and inform on potential future designs on targeted pharmacological or genetic intervention.
Dynamic patterns of information flow in complex networks
Authors: Harush Uzi , Barzel Baruch 
Published: December 2017

AbstractAlthough networks are extensively used to visualize information flow in biological, social and technological systems, translating topology into dynamic flow continues to challenge us, as similar networks exhibit fundamentally different flow patterns, driven by different interaction mechanisms. To uncover a network’s actual flow patterns, here we use a perturbative formalism, analytically tracking the contribution of all nodes/paths to the flow of information, exposing the rules that link structure and dynamic information flow for a broad range of nonlinear systems. We find that the diversity of flow patterns can be mapped into a single universal function, characterizing the interplay between the system’s topology and its dynamics, ultimately allowing us to identify the network’s main arteries of information flow. Counter-intuitively, our formalism predicts a family of frequently encountered dynamics where the flow of information avoids the hubs, favoring the network’s peripheral pathways, a striking disparity between structure and dynamics.
Increased ionization supports growth of aerosols into cloud condensation nuclei
Authors: Svensmark H. , Enghoff M. B. , Shaviv N. J. , Svensmark J. 
Published: December 2017

AbstractIons produced by cosmic rays have been thought to influence aerosols and clouds. In this study, the effect of ionization on the growth of aerosols into cloud condensation nuclei is investigated theoretically and experimentally. We show that the mass-flux of small ions can constitute an important addition to the growth caused by condensation of neutral molecules. Under atmospheric conditions the growth from ions can constitute several percent of the neutral growth. We performed experimental studies which quantify the effect of ions on the growth of aerosols between nucleation and sizes >20 nm and find good agreement with theory. Ion-induced condensation should be of importance not just in Earth’s present day atmosphere for the growth of aerosols into cloud condensation nuclei under pristine marine conditions, but also under elevated atmospheric ionization caused by increased supernova activity.
In situ inward epitaxial growth of bulk macroporous single crystals
Authors: Chen Chenlong , Sun Shujing , Chou Mitch M. C. , Xie Kui 
Published: December 2017

AbstractThe functionalities of porous materials could be significantly enhanced if the materials themselves were in single-crystal form, which, owing to structural coherence, would reduce electronic and optical scattering effects. However, growing macroporous single crystals remains a fundamental challenge, let alone manufacturing crystals large enough to be of practical use. Here we demonstrate a straightforward, inexpensive, versatile method for creating macroporous gallium nitride single crystals on a centimetre scale. The synthetic strategy is built upon a disruptive crystal growth mechanism that utilises direct nitridation of a parent LiGaO2 single crystal rendering an inward epitaxial growth process. Strikingly, the resulting single crystals exhibit electron mobility comparable to that for bulk crystals grown by the conventional sodium flux method. This approach not only affords control of both crystal and pore size through synthetic modification, but proves generic, thus opening up the possibility of designing macroporous crystals in a wealth of other materials.
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
Authors: Gordon Sean P. , Contreras-Moreira Bruno , Woods Daniel P. , Des Marais David L. , Burgess Diane , Shu Shengqiang , Stritt Christoph , Roulin Anne C. , Schackwitz Wendy , Tyler Ludmila , Martin Joel , Lipzen Anna , Dochy Niklas , Phillips Jeremy , Barry Kerrie , Geuten Koen , Budak Hikmet , Juenger Thomas E. , Amasino Richard , Caicedo Ana L. , Goodstein David , Davidson Patrick , Mur Luis A. J. , Figueroa Melania , Freeling Michael , Catalan Pilar , Vogel John P. 
Published: December 2017

AbstractWhile prokaryotic pan-genomes have been shown to contain many more genes than any individual organism, the prevalence and functional significance of differentially present genes in eukaryotes remains poorly understood. Whole-genome de novo assembly and annotation of 54 lines of the grass Brachypodium distachyon yield a pan-genome containing nearly twice the number of genes found in any individual genome. Genes present in all lines are enriched for essential biological functions, while genes present in only some lines are enriched for conditionally beneficial functions (e.g., defense and development), display faster evolutionary rates, lie closer to transposable elements and are less likely to be syntenic with orthologous genes in other grasses. Our data suggest that differentially present genes contribute substantially to phenotypic variation within a eukaryote species, these genes have a major influence in population genetics, and transposable elements play a key role in pan-genome evolution.
Dickkopf2 rescues erectile function by enhancing penile neurovascular regeneration in a mouse model of cavernous nerve injury
Authors: Ghatak Kalyan , Yin Guo Nan , Choi Min-Ji , Limanjaya Anita , Minh Nguyen Nhat , Ock Jiyeon , Song Kang-Moon , Kang Dong Hyuk , Kwon Young-Guen , Kim Ho Min , Ryu Ji-Kan , Suh Jun-Kyu 
Published: December 2017

AbstractPenile erection is a neurovascular event and neurologic or vascular disturbances are major causes of erectile dysfunction (ED). Radical prostatectomy for prostate cancer not only induces cavernous nerve injury (CNI) but also results in cavernous angiopathy, which is responsible for poor responsiveness to oral phosphodiesterase-5 inhibitors. Dickkopf2 (DKK2) is known as a Wnt signaling antagonist and is reported to promote mature and stable blood vessel formation. Here, we demonstrated in CNI mice that overexpression of DKK2 by administering DKK2 protein or by using DKK2-Tg mice successfully restored erectile function: this recovery was accompanied by enhanced neural regeneration through the secretion of neurotrophic factors, and restoration of cavernous endothelial cell and pericyte content. DKK2 protein also promoted neurite outgrowth in an ex vivo major pelvic ganglion culture experiment and enhanced tube formation in primary cultured mouse cavernous endothelial cells and pericytes co-culture system in vitro. In light of critical role of neuropathy and angiopathy in the pathogenesis of radical prostatectomy-induced ED, reprogramming of damaged erectile tissue toward neurovascular repair by use of a DKK2 therapeutic protein may represent viable treatment option for this condition.
AAV vector-meditated expression of HLA-G reduces injury-induced corneal vascularization, immune cell infiltration, and fibrosis
Authors: Hirsch Matthew L. , Conatser Laura M. , Smith Sara M. , Salmon Jacklyn H. , Wu Jerry , Buglak Nicholas E. , Davis Rich , Gilger Brian C. 
Published: December 2017

AbstractOver 1.5 million individuals suffer from cornea vascularization due to genetic and/or environmental factors, compromising visual acuity and often resulting in blindness. Current treatments of corneal vascularization are limited in efficacy and elicit undesirable effects including, ironically, vision loss. To develop a safe and effective therapy for corneal vascularization, adeno-associated virus (AAV) gene therapy, exploiting a natural immune tolerance mechanism induced by human leukocyte antigen G (HLA-G), was investigated. Self-complementary AAV cassettes containing codon optimized HLA-G1 (transmembrane) or HLA-G5 (soluble) isoforms were validated in vitro. Then, following a corneal intrastromal injection, AAV vector transduction kinetics, using a chimeric AAV capsid, were determined in rabbits. One week following corneal trauma, a single intrastromal injection of scAAV8G9-optHLA-G1 + G5 prevented corneal vascularization, inhibited trauma-induced T-lymphocyte infiltration (some of which were CD8+), and dramatically reduced myofibroblast formation compared to control treated eyes. Biodistribution analyses suggested AAV vectors persisted only in the trauma-induced corneas; however, a neutralizing antibody response to the vector capsid was observed inconsistently. The collective data demonstrate the clinical potential of scAAV8G9-optHLA-G to safely and effectively treat corneal vascularization and inhibit fibrosis while alluding to broader roles in ocular surface immunity and allogenic organ transplantation.
UV-B antagonises shade avoidance and increases levels of the flavonoid quercetin in coriander (Coriandrum sativum)
Authors: Fraser Donald P. , Sharma Ashutosh , Fletcher Taryn , Budge Simon , Moncrieff Chris , Dodd Antony N. , Franklin Keara A. 
Published: December 2017

AbstractDespite controlling a diverse array of regulatory processes in plants, UV-B wavelengths (280–315 nm) are attenuated by common greenhouse materials such as glass and polycarbonate and are therefore depleted in many commercial growing environments. In this study, we analysed the architecture, pigment accumulation and antioxidant capacity of coriander (Coriandrum sativum, also known as cilantro) plants grown with and without supplementary UV-B (1.5 µmol m−2 s−1). We demonstrate that UV-B limits stem elongation responses to neighbour proximity perception (shade avoidance), promoting a more compact plant architecture. In addition, UV-B increased leaf quercetin content and total antioxidant capacity. Arabidopsis thaliana mutants deficient in flavonoid biosynthesis were not impaired in shade avoidance inhibition, suggesting that UV-B-induced flavonoid synthesis is not a component of this response. Our results indicate that UV-B supplementation may provide a method to manipulate the architecture, flavour and nutritional content of potted herbs whilst reducing the deleterious impacts of dense planting on product quality.
Adaptation of Stability during Perturbed Walking in Parkinson’s Disease
Authors: Martelli Dario , Luo Lan , Kang Jiyeon , Kang Un Jung , Fahn Stanley , Agrawal Sunil K. 
Published: December 2017

AbstractGait and balance disorders are major problems that contribute to falls among subjects with Parkinson’s disease (PD). Strengthening the compensatory responses through the use of balance perturbations may improve balance in PD. To date, it is unclear how PD affects the ability to react and adapt to perturbations delivered while walking. This study aims to investigate how PD affects the ability to walk, respond to balance perturbations, and produce acute short-term effects to improve compensatory reactions and gait stability. A cable-driven robot was used to train nine patients with PD and nine age-matched controls with multidirectional waist-pull perturbations while walking on a treadmill. Margin of stability and base of support were evaluated while walking without cables and reacting to the perturbations. PD was associated with a reduced stability in the forward direction and the inability to produce proactive anticipatory adjustments. Both groups were able to improve the response to the disturbances and produce short-term aftereffects of increased gait stability once the cables were removed. A single session of perturbation-based balance training produced acute effects that ameliorated gait instability in PD. This result is encouraging for designing new therapeutic interventions that remediate falls risk.
Synergistic enhancing effect for mechanical and electrical properties of tungsten copper composites using spark plasma infiltrating sintering of copper-coated graphene
Authors: Chen Wenge , Dong Longlong , Wang Jiaojiao , Zuo Ying , Ren Shuxin , Fu Yongqing 
Published: December 2017

AbstractSuccessful applications of WCu alloys in high voltage electrical switches require their high strength and excellent conductivity. Unfortunately, the strategies for increasing their strength such as doping with fine particles and alloying often significantly decrease their conductivity. In this paper, we developed a new pathway for fabricating WCu alloys using spark plasma infiltrating sintering of copper-coated graphene (Cu@Gr) composite powders. Cu@Gr was found to partially prevent the formation of WC after sintering, and graphene was uniformly distributed on the surfaces of network Cu phases. Electrical conductivity of 38.512 M·S/m, thermal conductivity of 264 W·m−1·K−1 and microhardness of 278 HV were achieved for the sintered WCu composites doped with only 0.8 wt.% Cu@Gr powders, which showed 95.3%, 24.3%, 28% enhancement compared with those from the conventional sintering using the undoped WCu powders.
Phototaxis as a Collective Phenomenon in Cyanobacterial Colonies
Authors: Varuni P. , Menon Shakti N. , Menon Gautam I. 
Published: December 2017

AbstractCyanobacteria are a diverse group of photosynthetic bacteria that exhibit phototaxis, or motion in response to light. Cyanobacteria such as Synechocystis sp. secrete a mixture of complex polysaccharides that facilitate cell motion, while their type 4 pili allow them to physically attach to each other. Even though cells can respond individually to light, colonies are observed to move collectively towards the light source in dense finger-like projections. We present an agent-based model for cyanobacterial phototaxis that accounts for slime deposition as well as for direct physical links between bacteria, mediated through their type 4 pili. We reproduce the experimentally observed aggregation of cells at the colony boundary as a precursor to finger formation. Our model also describes the changes in colony morphology that occur when the location of the light source is abruptly changed. We find that the overall motion of cells toward light remains relatively unimpaired even if a fraction of them do not sense light, allowing heterogeneous populations to continue to mount a robust collective response to stimuli. Our work suggests that in addition to bio-chemical signalling via diffusible molecules in the context of bacterial quorum-sensing, short-ranged physical interactions may also contribute to collective effects in bacterial motility.
Dynamical Astrochemistry
Authors: Williams David A , Hartquist Thomas W , Rawlings Jonathan M C , Cecchi-Pestellini Cesare , Viti Serena 
Published: December 2017

Astrochemistry is a well-established interdisciplinary subject and the methods for describing time-dependent chemistry in static or slowly-changing regions of interstellar space have been well-developed over many years. Existing astrochemical books normally describe the subject in terms of chemistry in static or slowly-varying astronomical situations but the most significant astronomical regions are those in which the physical conditions change on timescales that are comparable to or shorter than chemical timescales.
Written by leading experts in this area, this is the first book specifically devoted to the astrochemistry of dynamically evolving astronomical regions. It provides a comprehensive description of this important area of science, stressing in particular the methods that have been developed for specific purposes. It will be of interest to researchers in astrochemistry, including both chemists and physicists and could form the basis of a postgraduate course for research students in chemistry and physics.