bluuebunny/crossref_metadata_2025_split huggingface dataset:
α-Integrin expression and function modulates presentation of cell surface calreticulin
Authors: Liu C-C , Leclair P , Monajemi M , Sly L M , Reid G S , Lim C J 
Published: June 2016

AbstractCalreticulin presentation on the cell surface is an important hallmark of immunogenic cell death (ICD), serving as the prophagocytic signal for macrophages. Cell adhesion is a physiologically relevant stimulus previously shown to increase calreticulin interaction with α-integrins via the juxtamembrane, cytosolic GFFKR motif. This study assessed whether integrin function can regulate surface calreticulin levels in ICD. We generated calreticulin-null T-lymphoblasts and confirmed the loss of surface calreticulin expression on cells treated with doxorubicin, an ICD inducer. Reconstituted expression with full-length calreticulin targeted to the endoplasmic reticulum (ER) successfully rescued doxorubicin-induced surface calreticulin. Reconstitution with a truncation mutant calreticulin targeted to the cytosol led to constitutively high surface calreticulin that was not further elevated by doxorubicin, suggesting calreticulin released from the stressed ER transits the cytosol before its translocation to the cell surface. When stimulated to engage integrin substrates, doxorubicin-treated wild-type T-lymphoblasts exhibited decreased surface calreticulin compared with cells under non-adherent conditions. The inhibitory effect on surface calreticulin was recapitulated for cells in suspension treated with a β1-integrin-activating antibody, 9EG7. Similarly, cells expressing a truncated α-integrin cytosolic tail, bearing only the juxtamembrane GFFKR calreticulin-binding motif, exhibited low surface calreticulin with doxorubicin treatment under non-adherent conditions. Using partial permeabilization techniques to distinguish between cytosolic and ER staining, we found that ICD inducers promoted the accumulation of cytosolic calreticulin with negligible change in total calreticulin, suggesting that integrin-mediated inhibition of surface calreticulin was due to reduced cytosolic to surface translocation. T-lymphoblasts co-treated with an ICD inducer and 9EG7 exhibited reduced phagocytosis by macrophages when compared with treatment with only ICD inducer. This study reveals a previously uncharacterized function of integrins as negative regulators of ICD by suppressing presentation of cell surface calreticulin.
Diversity, structure and convergent evolution of the global sponge microbiome
Authors: Thomas Torsten , Moitinho-Silva Lucas , Lurgi Miguel , Björk Johannes R. , Easson Cole , Astudillo-García Carmen , Olson Julie B. , Erwin Patrick M. , López-Legentil Susanna , Luter Heidi , Chaves-Fonnegra Andia , Costa Rodrigo , Schupp Peter J. , Steindler Laura , Erpenbeck Dirk , Gilbert Jack , Knight Rob , Ackermann Gail , Victor Lopez Jose , Taylor Michael W. , Thacker Robert W. , Montoya Jose M. , Hentschel Ute , Webster Nicole S. 
Published: June 2016

AbstractSponges (phylum Porifera) are early-diverging metazoa renowned for establishing complex microbial symbioses. Here we present a global Porifera microbiome survey, set out to establish the ecological and evolutionary drivers of these host–microbe interactions. We show that sponges are a reservoir of exceptional microbial diversity and major contributors to the total microbial diversity of the world’s oceans. Little commonality in species composition or structure is evident across the phylum, although symbiont communities are characterized by specialists and generalists rather than opportunists. Core sponge microbiomes are stable and characterized by generalist symbionts exhibiting amensal and/or commensal interactions. Symbionts that are phylogenetically unique to sponges do not disproportionally contribute to the core microbiome, and host phylogeny impacts complexity rather than composition of the symbiont community. Our findings support a model of independent assembly and evolution in symbiont communities across the entire host phylum, with convergent forces resulting in analogous community organization and interactions.
Molecular basis for CPAP-tubulin interaction in controlling centriolar and ciliary length
Authors: Zheng Xiangdong , Ramani Anand , Soni Komal , Gottardo Marco , Zheng Shuangping , Ming Gooi Li , Li Wenjing , Feng Shan , Mariappan Aruljothi , Wason Arpit , Widlund Per , Pozniakovsky Andrei , Poser Ina , Deng Haiteng , Ou Guangshuo , Riparbelli Maria , Giuliano Callaini , Hyman Anthony A. , Sattler Michael , Gopalakrishnan Jay , Li Haitao 
Published: June 2016

AbstractCentrioles and cilia are microtubule-based structures, whose precise formation requires controlled cytoplasmic tubulin incorporation. How cytoplasmic tubulin is recognized for centriolar/ciliary-microtubule construction remains poorly understood. Centrosomal-P4.1-associated-protein (CPAP) binds tubulin via its PN2-3 domain. Here, we show that a C-terminal loop-helix in PN2-3 targets β-tubulin at the microtubule outer surface, while an N-terminal helical motif caps microtubule’s α-β surface of β-tubulin. Through this, PN2-3 forms a high-affinity complex with GTP-tubulin, crucial for defining numbers and lengths of centriolar/ciliary-microtubules. Surprisingly, two distinct mutations in PN2-3 exhibit opposite effects on centriolar/ciliary-microtubule lengths. CPAPF375A, with strongly reduced tubulin interaction, causes shorter centrioles and cilia exhibiting doublet- instead of triplet-microtubules. CPAPEE343RR that unmasks the β-tubulin polymerization surface displays slightly reduced tubulin-binding affinity inducing over-elongation of newly forming centriolar/ciliary-microtubules by enhanced dynamic release of its bound tubulin. Thus CPAP regulates delivery of its bound-tubulin to define the size of microtubule-based cellular structures using a ‘clutch-like’ mechanism.
Contrasting emergence of Lyme disease across ecosystems
Authors: Mysterud Atle , Easterday William Ryan , Stigum Vetle Malmer , Aas Anders Bjørnsgaard , Meisingset Erling L. , Viljugrein Hildegunn 
Published: June 2016

AbstractGlobal environmental changes are causing Lyme disease to emerge in Europe. The life cycle of Ixodes ricinus, the tick vector of Lyme disease, involves an ontogenetic niche shift, from the larval and nymphal stages utilizing a wide range of hosts, picking up the pathogens causing Lyme disease from small vertebrates, to the adult stage depending on larger (non-transmission) hosts, typically deer. Because of this complexity the role of different host species for emergence of Lyme disease remains controversial. Here, by analysing long-term data on incidence in humans over a broad geographical scale in Norway, we show that both high spatial and temporal deer population density increase Lyme disease incidence. However, the trajectories of deer population sizes play an overall limited role for the recent emergence of the disease. Our study suggests that managing deer populations will have some effect on disease incidence, but that Lyme disease may nevertheless increase as multiple drivers are involved.
The hot pick-up technique for batch assembly of van der Waals heterostructures
Authors: Pizzocchero Filippo , Gammelgaard Lene , Jessen Bjarke S. , Caridad José M. , Wang Lei , Hone James , Bøggild Peter , Booth Timothy J. 
Published: June 2016

AbstractThe assembly of individual two-dimensional materials into van der Waals heterostructures enables the construction of layered three-dimensional materials with desirable electronic and optical properties. A core problem in the fabrication of these structures is the formation of clean interfaces between the individual two-dimensional materials which would affect device performance. We present here a technique for the rapid batch fabrication of van der Waals heterostructures, demonstrated by the controlled production of 22 mono-, bi- and trilayer graphene stacks encapsulated in hexagonal boron nitride with close to 100% yield. For the monolayer devices, we found semiclassical mean-free paths up to 0.9 μm, with the narrowest samples showing clear indications of the transport being affected by boundary scattering. The presented method readily lends itself to fabrication of van der Waals heterostructures in both ambient and controlled atmospheres, while the ability to assemble pre-patterned layers paves the way for complex three-dimensional architectures.
Sugary interfaces mitigate contact damage where stiff meets soft
Authors: Yoo Hee Young , Iordachescu Mihaela , Huang Jun , Hennebert Elise , Kim Sangsik , Rho Sangchul , Foo Mathias , Flammang Patrick , Zeng Hongbo , Hwang Daehee , Waite J. Herbert , Hwang Dong Soo 
Published: June 2016

AbstractThe byssal threads of the fan shell Atrina pectinata are non-living functional materials intimately associated with living tissue, which provide an intriguing paradigm of bionic interface for robust load-bearing device. An interfacial load-bearing protein (A. pectinata foot protein-1, apfp-1) with L-3,4-dihydroxyphenylalanine (DOPA)-containing and mannose-binding domains has been characterized from Atrina’s foot. apfp-1 was localized at the interface between stiff byssus and the soft tissue by immunochemical staining and confocal Raman imaging, implying that apfp-1 is an interfacial linker between the byssus and soft tissue, that is, the DOPA-containing domain interacts with itself and other byssal proteins via Fe3+–DOPA complexes, and the mannose-binding domain interacts with the soft tissue and cell membranes. Both DOPA- and sugar-mediated bindings are reversible and robust under wet conditions. This work shows the combination of DOPA and sugar chemistry at asymmetric interfaces is unprecedented and highly relevant to bionic interface design for tissue engineering and bionic devices.
Direct evidence of the molecular basis for biological silicon transport
Authors: Knight Michael J. , Senior Laura , Nancolas Bethany , Ratcliffe Sarah , Curnow Paul 
Published: June 2016

AbstractDiatoms are an important group of eukaryotic algae with a curious evolutionary innovation: they sheath themselves in a cell wall made largely of silica. The cellular machinery responsible for silicification includes a family of membrane permeases that recognize and actively transport the soluble precursor of biosilica, silicic acid. However, the molecular basis of silicic acid transport remains obscure. Here, we identify experimentally tractable diatom silicic acid transporter (SIT) homologues and study their structure and function in vitro, enabled by the development of a new fluorescence method for studying substrate transport kinetics. We show that recombinant SITs are Na+/silicic acid symporters with a 1:1 protein: substrate stoichiometry and KM for silicic acid of 20 μM. Protein mutagenesis supports the long-standing hypothesis that four conserved GXQ amino acid motifs are important in SIT function. This marks a step towards a detailed understanding of silicon transport with implications for biogeochemistry and bioinspired materials.
Spin and wavelength multiplexed nonlinear metasurface holography
Authors: Ye Weimin , Zeuner Franziska , Li Xin , Reineke Bernhard , He Shan , Qiu Cheng-Wei , Liu Juan , Wang Yongtian , Zhang Shuang , Zentgraf Thomas 
Published: June 2016

AbstractMetasurfaces, as the ultrathin version of metamaterials, have caught growing attention due to their superior capability in controlling the phase, amplitude and polarization states of light. Among various types of metasurfaces, geometric metasurface that encodes a geometric or Pancharatnam–Berry phase into the orientation angle of the constituent meta-atoms has shown great potential in controlling light in both linear and nonlinear optical regimes. The robust and dispersionless nature of the geometric phase simplifies the wave manipulation tremendously. Benefitting from the continuous phase control, metasurface holography has exhibited advantages over conventional depth controlled holography with discretized phase levels. Here we report on spin and wavelength multiplexed nonlinear metasurface holography, which allows construction of multiple target holographic images carried independently by the fundamental and harmonic generation waves of different spins. The nonlinear holograms provide independent, nondispersive and crosstalk-free post-selective channels for holographic multiplexing and multidimensional optical data storages, anti-counterfeiting, and optical encryption.
Structure of the exportin Xpo4 in complex with RanGTP and the hypusine-containing translation factor eIF5A
Authors: Aksu Metin , Trakhanov Sergei , Görlich Dirk 
Published: June 2016

AbstractXpo4 is a bidirectional nuclear transport receptor that mediates nuclear export of eIF5A and Smad3 as well as import of Sox2 and SRY. How Xpo4 recognizes such a variety of cargoes is as yet unknown. Here we present the crystal structure of the RanGTP·Xpo4·eIF5A export complex at 3.2 Å resolution. Xpo4 has a similar structure as CRM1, but the NES-binding site is occluded, and a new interaction site evolved that recognizes both globular domains of eIF5A. eIF5A contains hypusine, a unique amino acid with two positive charges, which is essential for cell viability and eIF5A function in translation. The hypusine docks into a deep, acidic pocket of Xpo4 and is thus a critical element of eIF5A’s complex export signature. This further suggests that Xpo4 recognizes other cargoes differently, and illustrates how Xpo4 suppresses – in a chaperone-like manner – undesired interactions of eIF5A inside nuclei.
Extrafine beclometasone diproprionate/formoterol fumarate: a review of its effects in chronic obstructive pulmonary disease
Authors: Singh Dave , Corradi Massimo , Spinola Monica , Petruzzelli Stefano , Papi Alberto 
Published: June 2016

AbstractA fixed-dose inhaled corticosteroid/long-acting β2-agonist (ICS/LABA) combination of extrafine beclometasone dipropionate and formoterol fumarate (BDP/FF) has been recently approved for use in chronic obstructive pulmonary disease (COPD). Small airway inflammation and remodelling are cardinal features of COPD; therefore, the ability of this extrafine formulation to reach the small, as well as the large, airways is likely to be therapeutically important by enabling treatment of inflammatory processes in the whole bronchial tree. The clinical development of extrafine BDP/FF has demonstrated significant benefits over extrafine FF in terms of lung function improvement and reduction of the exacerbation rate, thus supporting the beneficial effect of an ICS combined to a LABA in COPD patients. Head-to-head comparison studies versus other ICS/LABA combinations have shown that the extrafine formulation enables the clinical benefits to be achieved with a lower dose of ICS. Extrafine BDP/FF showed lung function and dyspnoea improvements comparable to other ICS/LABAs, and a significantly faster onset of action was observed when compared with a salmeterol-containing fixed-dose combination. This review summarises the clinical evidence supporting the efficacy of extrafine BDP/FF in COPD and confirming that extrafine BDP/FF achieves the type of health benefit expected from such a targeted ICS/LABA combination in COPD.
Model-based dietary optimization for late-stage, levodopa-treated, Parkinson’s disease patients
Authors: Guebila Marouen Ben , Thiele Ines 
Published: June 2016

AbstractLevodopa has been the gold standard for Parkinson’s disease treatment for more than 40 years. Its bioavailability is hindered by dietary amino acids, leading to fluctuations in the motor response particularly in late-stage (stage 3 and 4 on Hoehn and Yahr scale) patients. The routine dietary intervention consists of low-protein (<0.8 g/kg) diets or the redistribution of daily protein allowance to the last meal. Computational modeling was used to examine the fluctuation of gastrointestinal levodopa absorption under consideration of the diet by (i) identifying the group of patients that could benefit from dietary interventions, (ii) comparing existing diet recommendations for their impact on levodopa bioavailability, and (iii) suggesting a mechanism-based dietary intervention. We developed a multiscale computational model consisting of an ordinary differential equations-based advanced compartmentalized absorption and transit (ACAT) gut model and metabolic genome-scale small intestine epithelial cell model. We used this model to investigate complex spatiotemporal relationship between dietary amino acids and levodopa absorption. Our model predicted an improvement in bioavailability, as reflected by blood concentrations of levodopa with protein redistribution diet by 34% compared with a low-protein diet and by 11% compared with the ante cibum (a.c.) administration. These results are consistent with the reported better outcome in late-stage patients. A systematic analysis of the effect of different amino acids in the diet suggested that a serine-rich diet could improve the bioavailability by 22% compared with the a.c. administration. In addition, the slower gastric emptying rate in PD patients exacerbates the loss of levodopa due to competition. Optimizing dietary recommendations in quantity, composition, and intake time holds the promise to improve levodopa efficiency and patient’s quality of life based on highly detailed, mechanistic models of gut physiology endowed with improved extrapolative properties, thus paving the way for precision medical treatment.
pH-regulated template-free assembly of Sb4O5Cl2 hollow microsphere crystallites with self-narrowed bandgap and optimized photocatalytic performance
Authors: Yang Liuqing , Huang Jianfeng , Cao Liyun , Shi Li , Yu Qing , Kong Xingang , Jie Yanni 
Published: June 2016

AbstractSb4O5Cl2 hollow microspheres with self-narrowed bandgap and optimized photocatalytic performances are synthesized via a facile template-free method. It is found that the crystal structure and morphology of Sb4O5Cl2 crystallites are strongly dependent on the pH values of precursors. Nano-sized irregular-cuboids assembled Sb4O5Cl2 micro-particles and hollow microspheres can be synthesized at pH 1 and 2, whereas individual Sb4O5Cl2 micro-belts become to form when the pH is higher than 3. The irregular-cuboids assembled Sb4O5Cl2 micro-particles and hollow microspheres exhibit self-narrowed bandgap and higher light absorption ability compared with individual Sb4O5Cl2 micro-belts. The photoelectrochemical measurements show that the assembled Sb4O5Cl2 hollow microsphere crystallites prepared at pH 2 exhibit enhanced carrier density, improved separation efficiency of electron-hole pairs and decreased electron-transfer resistance. As a result, the irregular-cuboids assembled Sb4O5Cl2 hollow microspheres prepared at pH = 2 exhibit the highest photocatalytic activity for the degradation of gaseous iso-propanol (IPA) and Rhodamine B (RhB) aqueous solution. The good photocatalytic activity of Sb4O5Cl2 sample prepared at pH = 2 may be caused by the synergistic effect of its higher light absorption, the decreased electron-transfer resistance, the suppressed recombination of photogenerated electrons and holes, and the increased surface area.
Nasal commensal Staphylococcus epidermidis counteracts influenza virus
Authors: Chen Hui-Wen , Liu Pei-Feng , Liu Yu-Tsueng , Kuo Sherwin , Zhang Xing-Quan , Schooley Robert T. , Rohde Holger , Gallo Richard L. , Huang Chun-Ming 
Published: June 2016

AbstractSeveral microbes, including Staphylococcus epidermidis (S. epidermidis), a Gram-positive bacterium, live inside the human nasal cavity as commensals. The role of these nasal commensals in host innate immunity is largely unknown, although bacterial interference in the nasal microbiome may promote ecological competition between commensal bacteria and pathogenic species. We demonstrate here that S. epidermidis culture supernatants significantly suppressed the infectivity of various influenza viruses. Using high-performance liquid chromatography together with mass spectrometry, we identified a giant extracellular matrix-binding protein (Embp) as the major component involved in the anti-influenza effect of S. epidermidis. This anti-influenza activity was abrogated when Embp was mutated, confirming that Embp is essential for S. epidermidis activity against viral infection. We also showed that both S. epidermidis bacterial particles and Embp can directly bind to influenza virus. Furthermore, the injection of a recombinant Embp fragment containing a fibronectin-binding domain into embryonated eggs increased the survival rate of virus-infected chicken embryos. For an in vivo challenge study, prior Embp intranasal inoculation in chickens suppressed the viral titres and induced the expression of antiviral cytokines in the nasal tissues. These results suggest that S. epidermidis in the nasal cavity may serve as a defence mechanism against influenza virus infection.
58-F, a flavanone from Ophiopogon japonicus, prevents hepatocyte death by decreasing lysosomal membrane permeability
Authors: Yan Xiaofeng , Ye Tingjie , Hu Xudong , Zhao Pei , Wang Xiaoling 
Published: June 2016

AbstractLysosome membrane permeabilization (LMP) has been implicated in cell death. In the present study, we investigated the relationship between cell death and H2O2-/CCl4-induced LMP in hepatocytes in vitro and following acute liver injury in vivo. The key finding was that H2O2 triggered LMP by oxidative stress, as evidenced by a suppression of LAMP1 expression, a reduction in LysoTracker Green and AO staining and the leakage of proton and cathepsin B/D from the lysosome to the cytoplasm, resulting in cell death. CCl4 also triggered hepatocyte death by decreasing lysosome LAMP1 expression and by inducing the accumulation of products of peroxidative lipids and oxidized proteins. Furthermore, a novel compound 5,8-dimethoxy-6-methyl-7-hydroxy-3-3(2-hydroxy-4-methoxybenzyl) chroman-4-one (58-F) was extracted from Ophiopogon japonicus and served as a potential therapeutic drug. In vivo and in vitro results showed that 58-F effectively rescued hepatocytes by decreasing LMP and by inducing lysosomal enzyme translocation to the cytosol.
A relation to predict the failure of materials and potential application to volcanic eruptions and landslides
Authors: Hao Shengwang , Liu Chao , Lu Chunsheng , Elsworth Derek 
Published: June 2016

AbstractA theoretical explanation of a time-to-failure relation is presented, with this relationship "Equation missing" then used to describe the failure of materials. This provides the potential to predict timing (tf − t) immediately before failure by extrapolating the trajectory "Equation missing" as it asymptotes to zero with no need to fit unknown exponents as previously proposed in critical power law behaviors. This generalized relation is verified by comparison with approaches to criticality for volcanic eruptions and creep failure. A new relation based on changes with stress is proposed as an alternative expression of Voight’s relation, which is widely used to describe the accelerating precursory signals before material failure and broadly applied to volcanic eruptions, landslides and other phenomena. The new generalized relation reduces to Voight’s relation if stress is limited to increase at a constant rate with time. This implies that the time-derivatives in Voight’s analysis may be a subset of a more general expression connecting stress derivatives, and thus provides a potential method for forecasting these events.