bluuebunny/crossref_metadata_2025_split huggingface dataset:
A Diverse Community To Study Communities: Integration of Experiments and Mathematical Models To Study Microbial Consortia
Authors: Succurro Antonella , Moejes Fiona Wanjiku , Ebenhöh Oliver 
Published: May 2017

ABSTRACTThe last few years have seen the advancement of high-throughput experimental techniques that have produced an extraordinary amount of data. Bioinformatics and statistical analyses have become instrumental to interpreting the information coming from, e.g., sequencing data and often motivate further targeted experiments. The broad discipline of “computational biology” extends far beyond the well-established field of bioinformatics, but it is our impression that more theoretical methods such as the use of mathematical models are not yet as well integrated into the research studying microbial interactions. The empirical complexity of microbial communities presents challenges that are difficult to address within vivo/in vitroapproaches alone, and with microbiology developing from a qualitative to a quantitative science, we see stronger opportunities arising for interdisciplinary projects integrating theoretical approaches with experiments. Indeed, the addition ofin silicoexperiments, i.e., computational simulations, has a discovery potential that is, unfortunately, still largely underutilized and unrecognized by the scientific community. This minireview provides an overview of mathematical models of natural ecosystems and emphasizes that one critical point in the development of a theoretical description of a microbial community is the choice of problem scale. Since this choice is mostly dictated by the biological question to be addressed, in order to employ theoretical models fully and successfully it is vital to implement an interdisciplinary view at the conceptual stages of the experimental design.
Safe administration of S-1 after 5-fluorouracil-induced cardiotoxicity in a patient with colorectal cancer
Authors: Franck Caspar , Malfertheiner Peter , Venerito Marino 
Published: May 2017

Cardiotoxicity is a rare but challenging complication of 5-fluorouracil (5-FU) therapy. Compared with 5-FU, after application of S-1 lower plasma levels of the cardiotoxic metabolite alpha-fluoro-beta-alanine have been reported. Evidence for safe administration of S-1 following 5-FU cardiotoxicity is limited to a case report in an Asian patient. Herein we report the first case of S-1 application after 5-FU cardiotoxicity in a Caucasian patient.A 67-year-old man with right-sided metastatic colorectal cancer and history of 5-FU cardiotoxicity had a progressive disease after 8-month therapy with irinotecan and bevacizumab. In consideration of known 5-FU cardiotoxicity, he was referred to our department for therapy counselling. We started a combination therapy with S-1, oxaliplatin and bevacizumab. The treatment was well tolerated without any cardiac problems.Our report confirms the safety of S-1 in cases of 5-FU cardiotoxicity also in a Caucasian patient.
Actinomycosis presenting as an anterior abdominal mass after laparoscopic cholecystectomy
Authors: Alhumoud Zainab , Salem Amro 
Published: May 2017

Abdominal actinomycosis is a rare disease caused by different anaerobicActinomycesspecies. We report the case of a 55-year-old woman who presented with a painless, slow growing, left upper abdominal mass that developed after a laparoscopic cholecystectomy. A CT scan and MRI of the abdomen revealed a desmoid tumour of the left rectus abdominis muscle.Surgical excision was performed with an uneventful postoperative course. The histological analysis of the specimen was inconsistent with a desmoid tumour and revealed an infection ofActinomyces israeliiin the anterior abdominal wall that was confirmed with a microbiology culture. The surgical treatment was followed by a course of penicillin antibiotic therapy for 6 months. This treatment resulted in full recovery with no further complications. Although it is rare, the patient’s history of laparoscopic cholecystectomy was identified as the likely source of infection.
A case of acyclovir neurotoxicity presenting with atypical cerebrospinal fluid findings
Authors: Thind Guramrinder Singh , Roach Richard 
Published: May 2017

An 82-year-old man with a history of end-stage renal disease presented with progressively worsening confusion and somnolence for the past 4–5 days. The patient was diagnosed with herpes zoster by his primary care physician 5 days ago and was started on a course of valacyclovir 1 g three times a day (dose not adjusted for renal impairment).A lumbar puncture was performed and cerebrospinal fluid (CSF) studies revealed 37 white blood cells (WBCs)/hpf (100% monocytes), protein 64 mg/dL and glucose 52 mg/dL. He was started on ceftriaxone, ampicillin and acyclovir. MRI of the brain was done and was unremarkable. Acyclovir-induced encephalopathy was high on differential, but his CSF findings were concerning for viral encephalitis. Nonetheless, all antimicrobials were discontinued and he was scheduled for a 5-hour dialysis session. The very next day, he showed immense improvement and eventually recovered completely. CSF PCR tests for both herpes simplex virus and varicella zoster virus came back negative.
A paleolimnological archive of metal sequestration and release in the Cumberland Basin Marshes, Atlantic Canada
Authors: Dunnington Dewey W. , White Hilary , Spooner Ian S. , Mallory Mark L. , White Chris , O’Driscoll Nelson J. , McLellan Nic R. 
Published: May 2017

We used a paleolimnological approach at Long Lake, Nova Scotia, to construct a 10 500-year record of metal deposition in lakebed sediments and elucidate the influence of both natural and anthropogenic environmental changes. Aquatic sediment concentrations of mercury (Hg), arsenic (As), and chromium (Cr) in Long Lake fluctuated substantially and, during some periods, exceeded guidelines for the protection of aquatic life. Increases in lead (Pb), Hg, Cr, trace metals, and nitrogen stable isotopes (δ15N) were broadly coincident with a period of widespread drying from ca. 8000 to 4000 cal BP and were likely a consequence of regional fires. From ca. 4000 cal BP until 1700 AD, metal levels in general were low due to decreased erosion, increased precipitation, and reduced fire activity. Water level lowering and forced sediment aggradation (tiding) in the 1800s led to increases in minerogenic Pb and Cr, though fossil fuel combustion also likely contributed to total Pb concentrations. Stratigraphic proxies indicated increased inorganic sedimentation rates, and reduced autochthonous productivity were coincident with lower Hg and As concentrations in the Long Lake sediment. Our data indicate that natural phenomena (fire) can result in sediment contaminant exceedances, that most metals have multiple sources, and that both human-induced disturbance and emissions have contributed to Pb contamination in the last 200 years. In addition, wetter and generally cooler climate appeared to favour lower concentrations of contaminants in lake sediments. Although wetland sediments in the Cumberland Basin Marshes are not heavily polluted with metals, the development of constructed wetlands and the disruption of aquatic sediments have the potential to concentrate, mobilize, and increase the bioavailability of metals.
How is the presence of horizons and localized matter encoded in the entanglement entropy?
Authors: Cadoni Mariano , Jain Parul 
Published: May 2017

Motivated by the new theoretical paradigm that views space–time geometry as emerging from the entanglement of a pre-geometric theory, we investigate the issue of the signature of the presence of horizons and localized matter on the entanglement entropy (EE) [Formula: see text] for the case of three-dimensional AdS (AdS3) gravity. We use the holographically dual two-dimensional CFT on the torus and the related modular symmetry in order to treat bulk black holes and conical singularities (sourced by pointlike masses not shielded by horizons) on the same footing. In the regime where boundary tori can be approximated by cylinders, we are able to give universal expressions for the EE of black holes and conical singularities. We argue that the presence of horizons/localized matter in the bulk is encoded in the EE in terms of (i) enhancement/reduction of the entanglement of the AdS3 vacuum, (ii) scaling as area/volume of the leading term of the perturbative expansion of [Formula: see text], (iii) exponential/periodic behavior of [Formula: see text] and (iv) presence of unaccessible regions in the noncompact/compact dimension of the boundary cylinder. In particular, we show that the reduction effect of matter on the entanglement of the vacuum found by Verlinde for the de Sitter vacuum extends to the AdS3 vacuum.
Study on the antiseepage mechanism of the PBFC slurry for landfill site
Authors: Dai Guozhong , Shi Weicheng , Jiang Xiaoshu , Shi Guicai , Zhang Yaxing 
Published: May 2017

In order to develop a kind of slurry with low permeability which has some adsorption and retardation to the pollutants in leachate to be used in antiseepage engineering of leachate for landfill site, experiments based on orthogonal method were performed. The optimal PBFC slurry was selected: bentonite 18–26%, cement 16–24%, fly ash 18–20%, TOJ800-10 water reducing agent 0.01–0.03%, polyvinyl alcohol 0.2–0.8%, sodium carbonate 0.8–1.5% and water 680–780/1000 mL seriflus. The material has good groutability and a concretion stone ratio which is greater than 99.6%. The coefficient of permeability of 28-day concretion body is 0.53 × 10[Formula: see text]–1.86 × 10[Formula: see text] cm/s and the compressive strength is 0.64–1.04 MPa. The slurry has good adsorption and retardation properties. The block rate of NH4-N and phosphorus reached 98.28%, and the block rate of CODCr and BOD5 reached 85.67%. The block rate of Hg, Pb and other heavy metal ions reached 99.8%. The PBFC slurry improved the retardation capability of the pollutants of the leachate at the landfill site by its infiltration sedimentation and adsorption fixation.
Delineating the structural controls on the genesis of iron oxide–Cu–Au deposits through implicit modelling: a case study from the E1 Group, Cloncurry District, Australia
Authors: Case George , Blenkinsop Thomas , Chang Zhaoshan , Huizenga Jan Marten , Lilly Richard , McLellan John 
Published: May 2017

Abstract

Iron oxide–Cu–Au (IOCG) deposits encompass a range of ore body shapes, including strata-bound replacement ores and hydrothermal breccias. We use the implicit method to make a detailed three-dimensional geological model of a strata-bound IOCG in the Cloncurry District, the E1 Group, to elucidate structural controls on mineralization. This model is compared with the nearby, world-class, Ernest Henry breccia-hosted IOCG deposit. Cu–Au mineralization in the E1 Group occurs as structurally controlled, mainly strata-bound, replacement bodies hosted in metasedimentary and metavolcaniclastic rocks intercalated with barren meta-andesite. Replacement bodies in the E1 Group conform to a series of NNW-plunging folds formed in regional D
2
during peak metamorphism. Folding was followed by local D
3
/regional D
4
shortening, which formed a dextral, transpressional Riedel brittle to ductile system along the regional Cloncurry Fault Zone. Modelling suggests that much of the Cu–Au mineralization is controlled by synthetic R structures associated with this Riedel system. The deformation sequence at Ernest Henry is comparable, but differences in host rock rheology, permeability and fluid pressure may explain the variation in ore body types and total Cu–Au resource between the two deposits. The results carry implications for other districts containing these styles of IOCG mineralization.
VHL Inactivation in Precancerous Kidney Cells Induces an Inflammatory Response via ER Stress–Activated IRE1α Signaling
Authors: Kuo Chan-Yen , Lin Chih-Hung , Hsu Tien 
Published: May 2017

Abstract
Mutations and epigenetic inactivation of the tumor suppressor gene von Hippel-Lindau (VHL) are major causes of clear-cell renal cell carcinoma (ccRCC) that may originate from chronic inflammation. However, the role of VHL loss of function in the development of ccRCC via inflammation remains poorly understood. VHL-mutant cells exhibit metabolic abnormalities that can cause chronic endoplasmic reticulum (ER) stress and unfolded protein response. We hypothesize that unresolved ER stress induces the inflammatory responses observed in ccRCC. ER stress markers including BiP and XBP1s were significantly increased in cultured and primary VHL loss-of-function kidney cells. In epithelial cells, the kinase activity of IRE1α was required for the induction of NF-κB and JNK and for the recruitment of macrophages. IRE1α kinase activity was also important for the development of fibrotic phenotype in conditional Vhlh knockout mice. Our results offer insights into the therapeutic potential against ccRCC development by relieving metabolic stress. Such cancer prevention strategy may be critical for high-risk cohorts such as the familial VHL disease patients. Cancer Res; 77(13); 3406–16. ©2017 AACR.
IGF1R Protein Expression Is Not Associated with Differential Benefit to Concurrent Trastuzumab in Early-Stage HER2+ Breast Cancer from the North Central Cancer Treatment Group (Alliance) Adjuvant Trastuzumab Trial N9831
Authors: Reinholz Monica M. , Chen Beiyun , Dueck Amylou C. , Tenner Kathleen , Ballman Karla , Riehle Darren , Jenkins Robert B. , Geiger Xochiquetzal J. , McCullough Ann E. , Perez Edith A. 
Published: May 2017

Abstract
Background: Preclinical evidence indicates that increased insulin-like growth factor receptor-1 (IGF1R) signaling interferes with the action of trastuzumab suggesting a possible mechanism of trastuzumab resistance. Thus, we evaluated IGF1R prevalence, relationship with demographic data, and association with disease-free survival (DFS) of patients randomized to chemotherapy alone (Arm A) or chemotherapy with sequential (Arm B) or concurrent trastuzumab (Arm C) in the prospective phase III HER2+ adjuvant N9831 trial.
Experimental Design: IGF1R protein expression was determined in tissue microarray sections (three cores per block; N = 1,197) or in whole tissue sections (WS; N = 537) using IHC (rabbit polyclonal antibody against IGF1R β-subunit). A tumor was considered positive (IGF1R+) if any core or WS had ≥1+ membrane staining in &gt;0% invasive cells. Median follow-up was 8.5 years.
Results: Of 1,734 patients, 708 (41%) had IGF1R+ breast tumors. IGF1R+ was associated with younger age (median 48 vs. 51, P = 0.007), estrogen receptor/progesterone receptor positivity (78% vs. 35%, P &lt; 0.001), nodal positivity (89% vs. 83%, P &lt; 0.001), well/intermediate grade (34% vs. 24%, P &lt; 0.001), tumors ≥2 cm (72% vs. 67%, P = 0.02) but not associated with race or tumor histology. IGF1R did not affect DFS within arms. Between Arms A and C, patients with IGF1R+ and IGF1R− tumors had DFS HRs of 0.48 (P ≤ 0.001) and 0.68 (P = 0.009), respectively (Pinteraction = 0.17). Between Arms A and B, patients with IGF1R+ and IGF1R− tumors had DFS HRs of 0.83 (P = 0.25) and 0.69 (P = 0.01), respectively (Pinteraction = 0.42).
Conclusions: In contrast to preclinical studies that suggest a decrease in trastuzumab sensitivity in IGF1R+ tumors, our adjuvant data show benefit of adding trastuzumab for patients with either IGF1R+ and IGF1R− breast tumors. Clin Cancer Res; 23(15); 4203–11. ©2016 AACR.
Converting Lymphoma Cells into Potent Antigen-Presenting Cells for Interferon-Induced Tumor Regression
Authors: Liao Jing , Luan Yan , Ren Zhenhua , Liu Xiaojuan , Xue Diyuan , Xu Hairong , Sun Zhichen , Yang Kaiting , Peng Hua , Fu Yang-Xin 
Published: May 2017

AbstractAnti-hCD20 is a therapeutic mAb that is clinically used to treat B-cell lymphoma. Some lymphomas are resistant to anti-hCD20; others relapse after treatment with anti-hCD20. Using a syngeneic immunocompetent mouse model, we observed that targeting lymphoma with interferon-α (IFNα) abolished resistance of B-cell lymphoma to anti-CD20 while limiting interferon (IFN)-associated systemic toxicity in the host. Control of tumors by a fusion of anti-CD20 and IFNα (anti–CD20-IFNα) depended on existing tumor-infiltrating CD8+ T cells. Although lymphomas were resistant to IFN-directed killing, IFN-exposed tumor cells became the dominant antigen-presenting cells (APC) for the reactivation of tumor-infiltrating CD8+ T cells that then controlled those lymphomas. Anti–CD20-IFNα also abolished checkpoint blockade resistance in advanced B-cell lymphoma. Our findings indicate that anti–CD20-IFNα eradicates B-cell lymphoma by employing tumor cells as APCs to reactivate tumor-infiltrating CD8+ T cells and synergizing with anti–PD-L1 treatment. Cancer Immunol Res; 5(7); 560–70. ©2017 AACR.
Locating Value in the Study of Religion
Authors: Newton Richard 
Published: May 2017

AbstractReligious studies courses frequently justify their existence with the rhetoric of “value.” While appeasing the socio-economic concerns of college boards, this undermines the work of more critical approaches under the field’s big tent. The following paper responds to this disconcerting trend by casting religious studies as an analytical discipline that takes “evaluation” as its object of study. It details a way of navigating the critical turn using Michel de Certeau’s notion of “scriptural economy” as a pedagogical framework for three lower-level, undergraduate classes: REL-101Signifying Religion: An African American Worldview, REL-226Introduction to the New Testament, and REL-293Introduction to Islam. Students theorize religion as a heuristic for studying how bodies are conscribed, prescribed, described, and inscribed in relation to evaluative systems.
Temporal–Spatial Patterns of Relative Humidity and the Urban Dryness Island Effect in Beijing City
Authors: Yang Ping , Ren Guoyu , Hou Wei 
Published: May 2017

AbstractHourly datasets obtained by automatic weather stations in Beijing, China, are developed and employed to analyze the spatial and temporal characteristics of relative humidity (RH) and urban dryness island intensity (UDII) over built-up areas. A total of 36 stations inside the sixth ring road are considered as urban sites, while six stations in suburban belts surrounding the built-up areas are taken as reference sites. Results show that the RH is obviously smaller in urban areas than in suburban areas, indicating the effect of urbanization on near-surface atmospheric moisture and RH. A further analysis of relations between RH and temperature on varied time scales shows that the variations in RH in the urban areas are not due solely to changes in temperature. The annual and seasonal mean UDII are high in central urban areas, with the strongest UDII values occurring in autumn and the weakest values occurring in spring. The diurnal UDII variations are characterized by a steadily strong UDII stage from 2000 to 0800 LT and a minimum at 1500 or 1600 LT. The rapid shifts of UDII from high (low) to low (high) occur during the periods 0800–1600 LT (1600–2000 LT). The occurrence time of the peaks varies among different seasons: the peaks appear at 0700, 2100, 2000, and 0800 LT for spring, summer, autumn, and winter, respectively. Further analysis shows that large UDII values appear in the evenings and early nights in late summer and early to midautumn and that low UDII values mainly occur in the afternoon hours of spring, winter, and late autumn.
Quantifying Residual, Eddy, and Mean Flow Effects on Mixing in an Idealized Circumpolar Current
Authors: Wolfram Phillip J. , Ringler Todd D. 
Published: May 2017

AbstractMeridional diffusivity is assessed for a baroclinically unstable jet in a high-latitude idealized circumpolar current (ICC) using the Model for Prediction across Scales Ocean (MPAS-O) and the online Lagrangian in Situ Global High-Performance Particle Tracking (LIGHT) diagnostic via space–time dispersion of particle clusters over 120 monthly realizations of O(106) particles on 11 potential density surfaces. Diffusivity in the jet reaches values of O(6000) m2 s−1 and is largest near the critical layer supporting mixing suppression and critical layer theory. Values in the vicinity of the shelf break are suppressed to O(100) m2 s−1 because of the presence of westward slope front currents. Diffusivity attenuates less rapidly with depth in the jet than both eddy velocity and kinetic energy scalings would suggest. Removal of the mean flow via high-pass filtering shifts the nonlinear parameter (ratio of the eddy velocity to eddy phase speed) into the linear wave regime by increasing the eddy phase speed via the depth-mean flow. Low-pass filtering, in contrast, quantifies the effect of mean shear. Diffusivity is decomposed into mean flow shear, linear waves, and the residual nonhomogeneous turbulence components, where turbulence dominates and eddy-produced filamentation strained by background mean shear enhances mixing, accounting for ≥80% of the total diffusivity relative to mean shear [O(100) m2 s−1], linear waves [O(1000) m2 s−1], and undecomposed full diffusivity [O(6000) m2 s−1]. Diffusivity parameterizations accounting for both the nonhomogeneous turbulence residual and depth variability are needed.
Posttransplant Lymphoproliferative Disorder: Otolaryngological Manifestations and Management
Authors: Heyes Richard , Northfelt Donald W. , Lott David G. 
Published: May 2017

ObjectivePosttransplant lymphoproliferative disorder (PTLD) is a unifying term for a spectrum of lymphoid expansion entities brought about by immunosuppression and is strongly associated with Epstein‐Barr virus (EBV). Otolaryngological findings tend to present early in the clinical course; therefore, disease awareness among otolaryngologists is of utmost importance. This review synthesizes the body of literature pertaining to PTLD involving the head and neck, summarizes contemporary management, and highlights areas for future research.Data SourcesPubMed/Medline.Review MethodsPrimary literature search of the Medline database was performed for all titles published in the past 10 years pertaining to PTLD. The database search included PTLD combined with a collection of otolaryngological MeSH terms. Full manuscripts were reviewed based on relevance of their title and abstract. Selection into this review was according to clinical and scientific relevance.ConclusionAdenotonsillar focus is common in children in whom adenotonsillectomy may be diagnostic and prevents potentially morbid airway obstruction. Sinonasal PTLD may mimic fungal infection. Laryngotracheal involvement predominately presents in children with symptoms of airway obstruction. PTLD limited to the esophagus is rare. Oral PTLD is rare and phenotypically varied. Cutaneous presentation of PTLD is infrequent, yet one‐third of cases affects the head and neck. PTLD may present as cervical lymphadenopathy.Implications for PracticePTLD consideration is vital when evaluating posttransplant patients. Children and EBV‐seronegative patients should receive otolaryngological follow‐up after transplant. PTLD treatment is multidisciplinary and typically led by lymphoma specialists. Formal partnerships between otolaryngologists and transplant centers may improve patient care and research quality.