bluuebunny/crossref_metadata_2025_split huggingface dataset:
Longitudinal study of pesticide residue levels in human milk from Western Australia during 12 months of lactation: Exposure assessment for infants
Authors: Du Jian , Gridneva Zoya , Gay Melvin C. L. , Lai Ching T. , Trengove Robert D. , Hartmann Peter E. , Geddes Donna T. 
Published: December 2016

AbstractThe presence of pesticides in human milk (HM) is of great concern due to the potential health effects for the breastfed infant. To determine the relationships between HM pesticides and infant growth and development, a longitudinal study was conducted. HM samples (n = 99) from 16 mothers were collected at 2, 5, 9 and 12 months of lactation. A validated QuEChERS method and Gas chromatography-tandem mass spectrometry (GC-MS/MS) were used for the analysis of 88 pesticides in HM. Only p,p’-DDE, p,p’-DDT and β-HCH were detected with a mean concentration (±SD) of 52.25 ± 49.88 ng/g fat, 27.67 ± 20.96 ng/g fat and 48.00 ± 22.46 ng/g fat respectively. The concentrations of the detected pesticides decreased significantly throughout the first year of lactation. No significant relationships between HM p,p’-DDE and infant growth outcomes: weight, length, head circumference and percentage fat mass were detected. The actual daily intake (ADI) of total DDTs in this cohort was 14–1000 times lower than the threshold reference and significantly lower than the estimated daily intake (EDI). Further, the ADI decreased significantly throughout the first 12 months of lactation.
rpL3 promotes the apoptosis of p53 mutated lung cancer cells by down-regulating CBS and NFκB upon 5-FU treatment
Authors: Russo Annapina , Saide Assunta , Cagliani Roberta , Cantile Monica , Botti Gerardo , Russo Giulia 
Published: December 2016

Abstract5-FU is a chemotherapy drug commonly used for the treatment of human cancers; however drug resistance represents a major challenge for its clinical application. In the present study, we reporte that rpL3 induced by 5-FU treatment in Calu-6 cells represses CBS transcription and reduces CBS protein stability leading to a decrease of CBS protein levels. rpL3 also regulates negatively the activation of NFκB by preventing NFκB nuclear translocation through IκB-α up-regulation. Furthermore, we demonstrate that rpL3 significantly enhances the apoptosis of 5-FU treated Calu-6 cells promoting the overexpression of the pro-apoptotic proteins Bax and the inhibition of the anti-apoptotic protein Bcl-2. We finally demonstrate that rpL3 potentiates 5-FU efficacy inhibiting cell migration and invasion. Our results suggest that combination of rpL3 and 5-FU is a promising strategy for chemotherapy of lung cancers lacking functional p53 that are resistant to 5-FU.
Birth weight and risk of ischemic heart disease: A Mendelian randomization study
Authors: Au Yeung Shiu Lun , Lin Shi Lin , Li Albert Martin , Schooling C. Mary 
Published: December 2016

AbstractLow birth weight is a risk factor for cardiovascular disease. However, the association could be confounded by many factors. We used Mendelian randomization to clarify the role of birth weight in ischemic heart disease (IHD) and lipids. We used all 7 single nucleotide polymorphisms (SNPs) independently contributing to birth weight at genome wide significance (p < 5 × 10−8) in separate sample instrumental variable analysis to estimate the effect of birth weight on IHD using the CARDIoGRAMplusC4D 1000 Genomes based GWAS case (n = 60,801)-control (n = 123,504) study and on lipids using GLGC (n = 188,577). Higher genetically predicted birth weight was associated with lower risk of IHD (odds ratio (OR) 0.96 per 100 grams, 95% confidence interval (CI) 0.93 to 0.99), but the association was not robust to sensitivity analyses excluding SNPs related to height or use of weighted median methods. Genetically predicted birth weight was not associated with low density lipoprotein cholesterol or triglycerides, but was associated with lower high density lipoprotein cholesterol (−0.014 standard deviation, 95% CI −0.027 to −0.0005) and the association was more robust to the sensitivity analyses. Our study does not show strong evidence for an effect of birth weight on IHD and lipids.
Individuation of objects and object parts rely on the same neuronal mechanism
Authors: Poncet Marlene , Caramazza Alfonso , Mazza Veronica 
Published: December 2016

AbstractRecent results have shown that participants can enumerate multiple parts of a single object as efficiently as multiple distinct objects, suggesting a shared mechanism for individuation of objects and object parts. Here we used the subitizing phenomenon to investigate the neural mechanism underlying the individuation of object parts. In two experiments, we measured a lateralized EEG response (N2pc) previously associated with individuation of multiple objects. In line with the subitizing effect, participants’ error rate was low (less than 10%) when enumerating up to approximately three parts of an object but increased for larger numerosities. The N2pc amplitude increased as a function of the number of object parts, and reached an asymptote corresponding to the subitizing limit, replicating previous reports for separate objects. These results invite the inference that the same neural mechanism underlies individuation of multiple distinct objects and multiple parts of a single object.
Genome-wide Analysis of Phosphoenolpyruvate Carboxylase Gene Family and Their Response to Abiotic Stresses in Soybean
Authors: Wang Ning , Zhong Xiujuan , Cong Yahui , Wang Tingting , Yang Songnan , Li Yan , Gai Junyi 
Published: December 2016

AbstractPhosphoenolpyruvate carboxylase (PEPC) plays an important role in assimilating atmospheric CO2 during C4 and crassulacean acid metabolism photosynthesis, and also participates in various non-photosynthetic processes, including fruit ripening, stomatal opening, supporting carbon–nitrogen interactions, seed formation and germination, and regulation of plant tolerance to stresses. However, a comprehensive analysis of PEPC family in Glycine max has not been reported. Here, a total of ten PEPC genes were identified in soybean and denominated as GmPEPC1-GmPEPC10. Based on the phylogenetic analysis of the PEPC proteins from 13 higher plant species including soybean, PEPC family could be classified into two subfamilies, which was further supported by analyses of their conserved motifs and gene structures. Nineteen cis-regulatory elements related to phytohormones, abiotic and biotic stresses were identified in the promoter regions of GmPEPC genes, indicating their roles in soybean development and stress responses. GmPEPC genes were expressed in various soybean tissues and most of them responded to the exogenously applied phytohormones. GmPEPC6, GmPEPC8 and GmPEPC9 were significantly induced by aluminum toxicity, cold, osmotic and salt stresses. In addition, the enzyme activities of soybean PEPCs were also up-regulated by these treatments, suggesting their potential roles in soybean response to abiotic stresses.
Thermal Alternating Polymer Nanocomposite (TAPNC) Coating Designed to Prevent Aerodynamic Insect Fouling
Authors: Bayer Ilker S. , Krishnan K. Ghokulla , Robison Robert , Loth Eric , Berry Douglas H. , Farrell Thomas E. , Crouch Jeffrey D. 
Published: December 2016

AbstractInsect residue adhesion to moving surfaces such as turbine blades and aircraft not only causes surface contamination problems but also increases drag on these surfaces. Insect fouling during takeoff, climb and landing can result in increased drag and fuel consumption for aircraft with laminar-flow surfaces. Hence, certain topographical and chemical features of non-wettable surfaces need to be designed properly for preventing insect residue accumulation on surfaces. In this work, we developed a superhydrophobic coating that is able to maintain negligible levels of insect residue after 100 high speed (50 m/s) insect impact events produced in a wind tunnel. The coating comprises alternating layers of a hydrophobic, perfluorinated acrylic copolymer and hydrophobic surface functional silicon dioxide nanoparticles that are infused into one another by successive thermal treatments. The design of this coating was achieved as a result of various experiments conducted in the wind tunnel by using a series of superhydrophobic surfaces made by the combination of the same polymer and nanoparticles in the form of nanocomposites with varying surface texture and self-cleaning hydrophobicity properties. Moreover, the coating demonstrated acceptable levels of wear abrasion and substrate adhesion resistance against pencil hardness, dry/wet scribed tape peel adhesion and 17.5 kPa Taber linear abraser tests.
Production of Phloroglucinol, a Platform Chemical, in Arabidopsis using a Bacterial Gene
Authors: Abdel-Ghany Salah E. , Day Irene , Heuberger Adam L. , Broeckling Corey D. , Reddy Anireddy S.N. 
Published: December 2016

AbstractPhloroglucinol (1,3,5-trihydroxybenzene; PG) and its derivatives are phenolic compounds that are used for various industrial applications. Current methods to synthesize PG are not sustainable due to the requirement for carbon-based precursors and co-production of toxic byproducts. Here, we describe a more sustainable production of PG using plants expressing a native bacterial or a codon-optimized synthetic PhlD targeted to either the cytosol or chloroplasts. Transgenic lines were analyzed for the production of PG using gas and liquid chromatography coupled to mass spectroscopy. Phloroglucinol was produced in all transgenic lines and the line with the highest PhlD transcript level showed the most accumulation of PG. Over 80% of the produced PG was glycosylated to phlorin. Arabidopsis leaves have the machinery to glycosylate PG to form phlorin, which can be hydrolyzed enzymatically to produce PG. Furthermore, the metabolic profile of plants with PhlD in either the cytosol or chloroplasts was altered. Our results provide evidence that plants can be engineered to produce PG using a bacterial gene. Phytoproduction of PG using a bacterial gene paves the way for further genetic manipulations to enhance the level of PG with implications for the commercial production of this important platform chemical in plants.
Biological response of zebrafish embryos after short-term exposure to thifluzamide
Authors: Yang Yang , Liu Wenxian , Mu Xiyan , Qi Suzhen , Fu Bin , Wang Chengju 
Published: December 2016

AbstractThifluzamide is a new amide fungicide, and its extensive application may have toxic effects on zebrafish. To better understand the underlying mechanism, we investigated in detail the potential toxic effects of thifluzamide on zebrafish embryos. In the present study, embryos were exposed to 0, 0.19, 1.90, and 2.85 mg/L thifluzamide for 4 days. Obvious pathological changes were found upon a histological exam, and negative changes in mitochondrial structure were observed under Transmission Electron Microscopy (TEM), which qualitatively noted the toxic effects of thifluzamide on embryos. Moreover, we quantitatively evaluated the enzyme activities [succinate dehydrogenase (SDH), superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPx), caspases], the contents of malonaldehyde (MDA) and interleukin-8 (IL-8) and the expression levels of the related genes. This study suggests that the negative changes in mitochondrial structure and SDH activity might be responsible for oxidative damage, cell apoptosis and inflammation, which would facilitate the action of these factors in cell death and might play a crucial role during toxic events. In addition to providing the first description of the mechanism of the toxic effects of thifluzamide on embryos, this study also represents a step towards using embryos to assess mitochondrial metabolism and disease.
Designing a Broadband Pump for High-Quality Micro-Lasers via Modified Net Radiation Method
Authors: Nechayev Sergey , Reusswig Philip D. , Baldo Marc A. , Rotschild Carmel 
Published: December 2016

AbstractHigh-quality micro-lasers are key ingredients in non-linear optics, communication, sensing and low-threshold solar-pumped lasers. However, such micro-lasers exhibit negligible absorption of free-space broadband pump light. Recently, this limitation was lifted by cascade energy transfer, in which the absorption and quality factor are modulated with wavelength, enabling non-resonant pumping of high-quality micro-lasers and solar-pumped laser to operate at record low solar concentration. Here, we present a generic theoretical framework for modeling the absorption, emission and energy transfer of incoherent radiation between cascade sensitizer and laser gain media. Our model is based on linear equations of the modified net radiation method and is therefore robust, fast converging and has low complexity. We apply this formalism to compute the optimal parameters of low-threshold solar-pumped lasers. It is revealed that the interplay between the absorption and self-absorption of such lasers defines the optimal pump absorption below the maximal value, which is in contrast to conventional lasers for which full pump absorption is desired. Numerical results are compared to experimental data on a sensitized Nd3+:YAG cavity, and quantitative agreement with theoretical models is found. Our work modularizes the gain and sensitizing components and paves the way for the optimal design of broadband-pumped high-quality micro-lasers and efficient solar-pumped lasers.
Effects of Liposomes Charge on Extending Sciatic Nerve Blockade of N-ethyl Bromide of Lidocaine in Rats
Authors: Yin Qinqin , Ke Bowen , Chen Xiaobing , Guan Yikai , Feng Ping , Chen Guo , Kang Yi , Zhang Wensheng , Nie Yu 
Published: December 2016

AbstractN-methyl bromide of lidocaine (QX-314) is a potential local anaesthetic with compromised penetration through cell membranes due to its obligated positive charge. Liposomes have been widely used for drug delivery with promising efficacy and safety. Therefore we investigated the local anaesthetic effects and tissue reactions of QX-314 in combination with anionic, cationic or neutral liposomes in rat sciatic nerve block model, and explored the effects of these liposomes on cellular entry of QX-314 in human embryonic kidney 293 cells. The results demonstrated that anionic liposomes substantially prolonged the duration of sensory (25.7 ± 8.3 h) and motor (41.4 ± 6.1 h) blocks of QX-314, while cationic and neutral ones had little effects. Tissue reactions from QX-314 with anionic liposomes were similar to those with commonly used local anaesthetic bupivacaine. Consistent within vivoresults, the anionic liposomes produced the greatest promotion of cellular entry of QX-314 in a time-dependent manner. In conclusion, ultra-long lasting nerve blocks were achieved by a mixture of QX-314 and anionic liposomes with a satisfactory safety profile, indicating a potential approach to improve postoperative pain management. The liposome-induced enhancement in cellular uptake of QX-314 may underlie thein vivoeffects.
Fast interfacial charge transfer in α-Fe2O3−δCδ/FeVO4−x+δCx−δ@C bulk heterojunctions with controllable phase content
Authors: Zhao Chengcheng , Tan Guoqiang , Yang Wei , Xu Chi , Liu Ting , Su Yuning , Ren Huijun , Xia Ao 
Published: December 2016

AbstractThe novelties in this paper are embodied in the fast interfacial charge transfer in α-Fe2O3−δCδ/FeVO4−x+δCx−δ@C bulk heterojunctions with controllable phase compositions. The carbon source-glucose plays an important role as the connecting bridge between the micelles in the solution, forming interfacial C-O, C-O-Fe and O-Fe-C bonds through dehydration and polymerization reactions. Then the extra VO3− around the FeVO4 colloidal particles can react with unstable Fe(OH)3, resulting the phase transformation from α-Fe2O3 (47.99–7.16%) into FeVO4 (52.01–92.84%), promoting photocarriers’ generation capacities. After final carbonization, a part of C atoms enter into lattices of α-Fe2O3 and FeVO4, forming impurity levels and oxygen vacancies to increase effective light absorptions. Another part of C sources turn into interfacial carbon layers to bring fast charge transfer by decreasing the charge transition resistance (from 53.15 kΩ into 8.29 kΩ) and the surface recombination rate (from 64.07% into 7.59%). The results show that the bulk heterojunction with 90.29% FeVO4 and 9.71% α-Fe2O3 shows ideal light absorption, carriers’ transfer efficiency and available photocatalytic property. In general, the synergistic effect of optimized heterojunction structure, carbon replacing and the interface carbon layers are critical to develop great potential in stable and recoverable use.
Genomic duplication and translocation of reactivation transactivator and bZIP-homolog genes is a conserved event in alcelaphine herpesvirus 1
Authors: Myster Françoise , van Beurden Steven J. , Sorel Océane , Suárez Nicolás M. , Vanderplasschen Alain , Davison Andrew J. , Dewals Benjamin G. 
Published: December 2016

AbstractAlcelaphine herpesvirus 1 (AlHV-1) is a gammaherpesvirus carried asymptomatically by wildebeest. Upon cross-species transmission, AlHV-1 induces malignant catarrhal fever (MCF), a fatal lymphoproliferative disease of ruminants, including cattle. The strain C500 has been cloned as an infectious, pathogenic bacterial artificial chromosome (BAC) that is used to study MCF. Although AlHV-1 infection can be established in cell culture, multiple passages in vitro cause a loss of virulence associated with rearrangements of the viral genome. Here, sequencing of the BAC clone showed that the long unique region (LUR) of the genome is nearly identical to that of the previously sequenced strain from which the BAC was derived, and identified the duplication and translocation of a region from within LUR, containing the entire coding sequences of ORF50-encoding reactivation transactivator Rta and A6-encoding bZIP protein genes. The duplicated region was further located to a position within the terminal repeat (TR) and its deletion resulted in lower ORF50 expression levels and reduced viral fitness. Finally, the presence of a similar but not identical duplication and translocation containing both genes was found in AlHV-1 strain WC11. These results indicate that selection pressure for enhanced viral fitness may drive the duplication of ORF50 and A6 in AlHV-1.
Identification of protein structural elements responsible for the diversity of sequence preferences among Mini-III RNases
Authors: Głów Dawid , Kurkowska Małgorzata , Czarnecka Justyna , Szczepaniak Krzysztof , Pianka Dariusz , Kappert Verena , Bujnicki Janusz M. , Skowronek Krzysztof J. 
Published: December 2016

AbstractMany known endoribonucleases select their substrates based on the presence of one or a few specific nucleotides at or near the cleavage site. In some cases, selectivity is also determined by the structural features of the substrate. We recently described the sequence-specific cleavage of double-stranded RNA by Mini-III RNase from Bacillus subtilis in vitro. Here, we characterized the sequence specificity of eight other members of the Mini-III RNase family from different bacterial species. High-throughput analysis of the cleavage products of Φ6 bacteriophage dsRNA indicated subtle differences in sequence preference between these RNases, which were confirmed and characterized by systematic analysis of the cleavage kinetics of a set of short dsRNA substrates. We also showed that the sequence specificities of Mini-III RNases are not reflected by different binding affinities for cognate and non-cognate sequences, suggesting that target selection occurs predominantly at the cleavage step. We were able to identify two structural elements, the α4 helix and α5b-α6 loop that were involved in target selection. Characterization of the sequence specificity of the eight Mini-III RNases may provide a basis for better understanding RNA substrate recognition by Mini-III RNases and adopting these enzymes and their engineered derivatives as tools for RNA research.
Global proteomic analysis of prenylated proteins in Plasmodium falciparum using an alkyne-modified isoprenoid analogue
Authors: Suazo Kiall F. , Schaber Chad , Palsuledesai Charuta C. , Odom John Audrey R. , Distefano Mark D. 
Published: December 2016

AbstractSevere malaria due to Plasmodium falciparum infection remains a serious threat to health worldwide and new therapeutic targets are highly desirable. Small molecule inhibitors of prenyl transferases, enzymes that catalyze the post-translational isoprenyl modifications of proteins, exhibit potent antimalarial activity. The antimalarial actions of prenyltransferase inhibitors indicate that protein prenylation is required for malaria parasite development. In this study, we used a chemical biology strategy to experimentally characterize the entire complement of prenylated proteins in the human malaria parasite. In contrast to the expansive mammalian and fungal prenylomes, we find that P. falciparum possesses a restricted set of prenylated proteins. The prenylome of P. falciparum is dominated by Rab GTPases, in addition to a small number of prenylated proteins that also appear to function primarily in membrane trafficking. Overall, we found robust experimental evidence for a total of only thirteen prenylated proteins in P. falciparum, with suggestive evidence for an additional two probable prenyltransferase substrates. Our work contributes to an increasingly complete picture of essential, post-translational hydrophobic modifications in blood-stage P. falciparum.
One-pot synthesis of class II lanthipeptide bovicin HJ50 via an engineered lanthipeptide synthetase
Authors: Wang Jian , Ge Xiaoxuan , Zhang Li , Teng Kunling , Zhong Jin 
Published: December 2016

AbstractLanthipeptides are a large class of bacteria-produced, ribosomally-synthesized and post-translationally modified peptides. They are recognized as peptide antibiotics because most of them exhibit potent antimicrobial activities against Gram-positive bacteria especially those that are phylogenetically related to producers. Maturation of class II lanthipeptide like bovicin HJ50 undergoes precursor modification by LanM and a subsequent leader peptide cleavage by LanT. Herein, via co-expression of precursor gene bovA, modification gene bovM and transporter gene bovT in Escherichia coli C43 (DE3), bioactive bovicin HJ50 was successfully produced and secreted. To further achieve in vitro one-pot synthesis of bovicin HJ50, an engineered bovicin HJ50 synthetase BovT150M was obtained by fusing the peptidase domain of BovT (BovT150) to the N-terminus of BovM. BovT150M exhibited dual functions of precursor modification and leader peptide cleavage to release mature bovicin HJ50. Under the guidance of BovA leader peptide, BovT150M exhibited substrate tolerance to modify non-native substrates including suicin and lacticin 481. This work exemplifies the feasibility of enzyme chimera of peptidase domain (LanT150) and modification enzyme (LanM) as a one-pot lanthipeptide synthetase.