bluuebunny/crossref_metadata_2025_split huggingface dataset:
Rapid adaptation to microgravity in mammalian macrophage cells
Authors: Thiel Cora S. , de Zélicourt Diane , Tauber Svantje , Adrian Astrid , Franz Markus , Simmet Dana M. , Schoppmann Kathrin , Hauschild Swantje , Krammer Sonja , Christen Miriam , Bradacs Gesine , Paulsen Katrin , Wolf Susanne A. , Braun Markus , Hatton Jason , Kurtcuoglu Vartan , Franke Stefanie , Tanner Samuel , Cristoforetti Samantha , Sick Beate , Hock Bertold , Ullrich Oliver 
Published: February 2017

AbstractDespite the observed severe effects of microgravity on mammalian cells, many astronauts have completed long term stays in space without suffering from severe health problems. This raises questions about the cellular capacity for adaptation to a new gravitational environment. The International Space Station (ISS) experiment TRIPLE LUX A, performed in the BIOLAB laboratory of the ISS COLUMBUS module, allowed for the first time the direct measurement of a cellular function in real time and on orbit. We measured the oxidative burst reaction in mammalian macrophages (NR8383 rat alveolar macrophages) exposed to a centrifuge regime of internal 0 g and 1 g controls and step-wise increase or decrease of the gravitational force in four independent experiments. Surprisingly, we found that these macrophages adapted to microgravity in an ultra-fast manner within seconds, after an immediate inhibitory effect on the oxidative burst reaction. For the first time, we provided direct evidence of cellular sensitivity to gravity, through real-time on orbit measurements and by using an experimental system, in which all factors except gravity were constant. The surprisingly ultra-fast adaptation to microgravity indicates that mammalian macrophages are equipped with a highly efficient adaptation potential to a low gravity environment. This opens new avenues for the exploration of adaptation of mammalian cells to gravitational changes.
Evolution of the functionally conserved DCC gene in birds
Authors: Patthey Cedric , Tong Yong Guang , Tait Christine Mary , Wilson Sara Ivy 
Published: February 2017

AbstractUnderstanding the loss of conserved genes is critical for determining how phenotypic diversity is generated. Here we focus on the evolution of DCC, a gene that encodes a highly conserved neural guidance receptor. Disruption of DCC in animal models and humans results in major neurodevelopmental defects including commissural axon defects. Here we examine DCC evolution in birds, which is of particular interest as a major model system in neurodevelopmental research. We found the DCC containing locus was disrupted several times during evolution, resulting in both gene losses and faster evolution rate of salvaged genes. These data suggest that DCC had been lost independently twice during bird evolution, including in chicken and zebra finch, whereas it was preserved in many other closely related bird species, including ducks. Strikingly, we observed that commissural axon trajectory appeared similar regardless of whether DCC could be detected or not. We conclude that the DCC locus is susceptible to genomic instability leading to independent disruptions in different branches of birds and a significant influence on evolution rate. Overall, the phenomenon of loss or molecular evolution of a highly conserved gene without apparent phenotype change is of conceptual importance for understanding molecular evolution of key biological processes.
Simple and Large Scale Construction of MoS2-g-C3N4 Heterostructures Using Mechanochemistry for High Performance Electrochemical Supercapacitor and Visible Light Photocatalytic Applications
Authors: Ansari Sajid Ali , Cho Moo Hwan 
Published: February 2017

AbstractThe design of heterojunctions for efficient electrochemical energy storage and environmental remediation are promising for future energy and environment applications. In this study, a molybdenum disulfide-graphitic carbon nitride (MoS2-g-C3N4) heterojunction was designed by applying simple mechanochemistry, which can be scaled up for mass production. The physical-chemical and photophysical properties of the as-prepared MoS2-g-C3N4 heterojunction were analyzed using a range of characterization techniques. The supercapacitance performance was determined by electrochemical half-cell measurements, and visible light-induced photoelectrochemical and photocatalytic performance was studied using photocurrent and model organic pollutant degradation experiments. The resulting MoS2-g-C3N4 under the optimized experimental conditions showed significantly higher photocatalytic activity and photoelectrochemical performance under similar visible photoirradiation conditions compared to the bare materials. The resulting heterostructure electrode delivered a higher capacitance of 240.85 F/g than the bare material (48.77 F/g) with good capacitance retention. The superior performance was attributed mainly to the robust light harvesting ability, improved charge separation, high surface area, increased mass transfer, and capacitive and conductive behavior. The convenient and mass production of heterojunctions using a simple and cost-effective method will provide a good example for the efficient design of visible light active photocatalysts and capacitor electrode materials for environmental remediation and energy storage device applications.
SMAD3 and SMAD4 have a more dominant role than SMAD2 in TGFβ-induced chondrogenic differentiation of bone marrow-derived mesenchymal stem cells
Authors: de Kroon Laurie M. G. , Narcisi Roberto , van den Akker Guus G. H. , Vitters Elly L. , Blaney Davidson Esmeralda N. , van Osch Gerjo J. V. M. , van der Kraan Peter M. 
Published: February 2017

AbstractTo improve cartilage formation by bone marrow-derived mesenchymal stem cells (BMSCs), the signaling mechanism governing chondrogenic differentiation requires better understanding. We previously showed that the transforming growth factor-β (TGFβ) receptor ALK5 is crucial for chondrogenesis induced by TGFβ. ALK5 phosphorylates SMAD2 and SMAD3 proteins, which then form complexes with SMAD4 to regulate gene transcription. By modulating the expression of SMAD2, SMAD3 and SMAD4 in human BMSCs, we investigated their role in TGFβ-induced chondrogenesis. Activation of TGFβ signaling, represented by SMAD2 phosphorylation, was decreased by SMAD2 knockdown and highly increased by SMAD2 overexpression. Moreover, TGFβ signaling via the alternative SMAD1/5/9 pathway was strongly decreased by SMAD4 knockdown. TGFβ-induced chondrogenesis of human BMSCs was strongly inhibited by SMAD4 knockdown and only mildly inhibited by SMAD2 knockdown. Remarkably, both knockdown and overexpression of SMAD3 blocked chondrogenic differentiation. Chondrogenesis appears to rely on a delicate balance in the amount of SMAD3 and SMAD4 as it was not enhanced by SMAD4 overexpression and was inhibited by SMAD3 overexpression. Furthermore, this study reveals that TGFβ-activated phosphorylation of SMAD2 and SMAD1/5/9 depends on the abundance of SMAD4. Overall, our findings suggest a more dominant role for SMAD3 and SMAD4 than SMAD2 in TGFβ-induced chondrogenesis of human BMSCs.
Intraspecific variation among Tetranychid mites for ability to detoxify and to induce plant defenses
Authors: Ozawa Rika , Endo Hiroki , Iijima Mei , Sugimoto Koichi , Takabayashi Junji , Gotoh Tetsuo , Arimura Gen-ichiro 
Published: February 2017

AbstractTwo genotypes coexist among Kanzawa spider mites, one of which causes red scars and the other of which causes white scars on leaves, and they elicit different defense responses in host plants. Based on RNA-Seq analysis, we revealed here that the expression levels of genes involved in the detoxification system were higher in Red strains than White strains. The corresponding enzyme activities as well as performances for acaricide resistance and host adaptation toward Laminaceae were also higher in Red strains than White strains, indicating that Red strains were superior in trait(s) of the detox system. In subsequent generations of strains that had survived exposure to fenpyroximate, both strains showed similar resistance to this acaricide, as well as similar detoxification activities. The endogenous levels of salicylic acid and jasmonic acid were increased similarly in bean leaves damaged by original Red strains and their subsequent generations that inherited high detox activity. Jasmonic acid levels were increased in leaves damaged by original White strains, but not by their subsequent generations that inherited high detox activity. Together, these data suggest the existence of intraspecific variation - at least within White strains - with respect to their capacity to withstand acaricides and host plant defenses.
Impact of asynchronous emergence of two lethal pathogens on amphibian assemblages
Authors: Rosa Gonçalo M. , Sabino-Pinto Joana , Laurentino Telma G. , Martel An , Pasmans Frank , Rebelo Rui , Griffiths Richard A. , Stöhr Anke C. , Marschang Rachel E. , Price Stephen J. , Garner Trenton W. J. , Bosch Jaime 
Published: February 2017

AbstractEmerging diseases have been increasingly associated with population declines, with co-infections exhibiting many types of interactions. The chytrid fungus (Batrachochytrium dendrobatidis) and ranaviruses have extraordinarily broad host ranges, however co-infection dynamics have been largely overlooked. We investigated the pattern of co-occurrence of these two pathogens in an amphibian assemblage in Serra da Estrela (Portugal). The detection of chytridiomycosis in Portugal was linked to population declines of midwife-toads (Alytes obstetricans). The asynchronous and subsequent emergence of a second pathogen - ranavirus - caused episodes of lethal ranavirosis. Chytrid effects were limited to high altitudes and a single host, while ranavirus was highly pathogenic across multiple hosts, life-stages and altitudinal range. This new strain (Portuguese newt and toad ranavirus – member of the CMTV clade) caused annual mass die-offs, similar in host range and rapidity of declines to other locations in Iberia affected by CMTV-like ranaviruses. However, ranavirus was not always associated with disease, mortality and declines, contrasting with previous reports on Iberian CMTV-like ranavirosis. We found little evidence that pre-existing chytrid emergence was associated with ranavirus and the emergence of ranavirosis. Despite the lack of cumulative or amplified effects, ranavirus drove declines of host assemblages and changed host community composition and structure, posing a grave threat to all amphibian populations.
3D graphene preparation via covalent amide functionalization for efficient metal-free electrocatalysis in oxygen reduction
Authors: Ahmed Mohammad Shamsuddin , Kim Young-Bae 
Published: February 2017

Abstract3D and porous reduced graphene oxide (rGO) catalysts have been prepared with sp3-hybridized 1,4-diaminobutane (sp3-DABu, rGO-sp3-rGO) and sp2-hybridized 1,4-diaminobenzene (sp2-DABe, rGO-sp2-rGO) through a covalent amidation and have employed as a metal-free electrocatalyst for oxygen reduction reaction (ORR) in alkaline media. Both compounds have used as a junction between functionalized rGO layers to improve electrical conductivity and impart electrocatalytic activity to the ORR resulting from the interlayer charge transfer. The successful amidation and the subsequent reduction in the process of catalyst preparation have confirmed by X-ray photoelectron spectroscopy. A hierarchical porous structure is also confirmed by surface morphological analysis. Specific surface area and thermal stability have increased after successful the amidation by sp3-DABu. The investigated ORR mechanism reveals that both functionalized rGO is better ORR active than nonfunctionalized rGO due to pyridinic-like N content and rGO-sp3-rGO is better ORR active than rGO-sp2-rGO due to higher pyridinic-like N content and π-electron interaction-free interlayer charge transfer. Thus, the rGO-sp3-rGO has proven as an efficient metal-free electrocatalyst with better electrocatalytic activity, stability, and tolerance to the crossover effect than the commercially available Pt/C for ORR.
Transient ALT activation protects human primary cells from chromosome instability induced by low chronic oxidative stress
Authors: Coluzzi Elisa , Buonsante Rossella , Leone Stefano , Asmar Anthony J. , Miller Kelley L. , Cimini Daniela , Sgura Antonella 
Published: February 2017

AbstractCells are often subjected to the effect of reactive oxygen species (ROS) as a result of both intracellular metabolism and exposure to exogenous factors. ROS-dependent oxidative stress can induce 8-oxodG within the GGG triplet found in the G-rich human telomeric sequence (TTAGGG), making telomeres highly susceptible to ROS-induced oxidative damage. Telomeres are nucleoprotein complexes that protect the ends of linear chromosomes and their dysfunction is believed to affect a wide range of cellular and/or organismal processes. Acute oxidative stress was shown to affect telomere integrity, but how prolonged low level oxidative stress, which may be more physiologically relevant, affects telomeres is still poorly investigated. Here, we explored this issue by chronically exposing human primary fibroblasts to a low dose of hydrogen peroxide. We observed fluctuating changes in telomere length and fluctuations in the rates of chromosome instability phenotypes, such that when telomeres shortened, chromosome instability increased and when telomeres lengthened, chromosome instability decreased. We found that telomere length fluctuation is associated with transient activation of an alternative lengthening of telomere (ALT) pathway, but found no evidence of cell death, impaired proliferation, or cell cycle arrest, suggesting that ALT activation may prevent oxidative damage from reaching levels that threaten cell survival.
The diet of the first Europeans from Atapuerca
Authors: Pérez-Pérez Alejandro , Lozano Marina , Romero Alejandro , Martínez Laura M. , Galbany Jordi , Pinilla Beatriz , Estebaranz-Sánchez Ferran , Bermúdez de Castro José María , Carbonell Eudald , Arsuaga Juan Luís 
Published: February 2017

AbstractHominin dietary specialization is crucial to understanding the evolutionary changes of craniofacial biomechanics and the interaction of food processing methods’ effects on teeth. However, the diet-related dental wear processes of the earliest European hominins remain unknown because most of the academic attention has focused on Neandertals. Non-occlusal dental microwear provides direct evidence of the effect of chewed food particles on tooth enamel surfaces and reflects dietary signals over time. Here, we report for the first time the direct effect of dietary abrasiveness as evidenced by the buccal microwear patterns on the teeth of the Sima del Elefante-TE9 and Gran Dolina-TD6 Atapuerca hominins (1.2–0.8 million years ago − Myr) as compared with other Lower and Middle Pleistocene populations. A unique buccal microwear pattern that is found in Homo antecessor (0.96–0.8 Myr), a well-known cannibal species, indicates dietary practices that are consistent with the consumption of hard and brittle foods. Our findings confirm that the oldest European inhabitants ingested more mechanically-demanding diets than later populations because they were confronted with harsh, fluctuating environmental conditions. Furthermore, the influence of grit-laden food suggests that a high-quality meat diet from butchering processes could have fueled evolutionary changes in brain size.
Development of a pipeline for automated, high-throughput analysis of paraspeckle proteins reveals specific roles for importin α proteins
Authors: Major Andrew T. , Miyamoto Yoichi , Lo Camden Y. , Jans David A. , Loveland Kate L. 
Published: February 2017

AbstractWe developed a large-scale, unbiased analysis method to measure how functional variations in importin (IMP) α2, IMPα4 and IMPα6 each influence PSPC1 and SFPQ nuclear accumulation and their localization to paraspeckles. This addresses the hypothesis that individual IMP protein activities determine cargo nuclear access to influence cell fate outcomes. We previously demonstrated that modulating IMPα2 levels alters paraspeckle protein 1 (PSPC1) nuclear accumulation and affects its localization into a subnuclear domain that affects RNA metabolism and cell survival, the paraspeckle. An automated, high throughput, image analysis pipeline with customisable outputs was created using Imaris software coupled with Python and R scripts; this allowed non-subjective identification of nuclear foci, nuclei and cells. HeLa cells transfected to express exogenous full-length and transport-deficient IMPs were examined using SFPQ and PSPC1 as paraspeckle markers. Thousands of cells and >100,000 nuclear foci were analysed in samples with modulated IMPα functionality. This analysis scale enabled discrimination of significant differences between samples where paraspeckles inherently display broad biological variability. The relative abundance of paraspeckle cargo protein(s) and individual IMPs each influenced nuclear foci numbers and size. This method provides a generalizable high throughput analysis platform for investigating how regulated nuclear protein transport controls cellular activities.
A randomised clinical study to determine the effect of a toothpaste containing enzymes and proteins on plaque oral microbiome ecology
Authors: Adams S. E. , Arnold D. , Murphy B. , Carroll P. , Green A. K. , Smith A. M. , Marsh P. D. , Chen T. , Marriott R. E. , Brading M. G. 
Published: February 2017

AbstractThe numerous species that make up the oral microbiome are now understood to play a key role in establishment and maintenance of oral health. The ability to taxonomically identify community members at the species level is important to elucidating its diversity and association to health and disease. We report the overall ecological effects of using a toothpaste containing enzymes and proteins compared to a control toothpaste on the plaque microbiome. The results reported here demonstrate that a toothpaste containing enzymes and proteins can augment natural salivary defences to promote an overall community shift resulting in an increase in bacteria associated with gum health and a concomitant decrease in those associated with periodontal disease. Statistical analysis shows significant increases in 12 taxa associated with gum health including Neisseria spp. and a significant decrease in 10 taxa associated with periodontal disease including Treponema spp. The results demonstrate that a toothpaste containing enzymes and proteins can significantly shift the ecology of the oral microbiome (at species level) resulting in a community with a stronger association to health.
Low-dose radiation decreases tumor progression via the inhibition of the JAK1/STAT3 signaling axis in breast cancer cell lines
Authors: Kaushik Neha , Kim Min-Jung , Kim Rae-Kwon , Kumar Kaushik Nagendra , Seong Ki Moon , Nam Seon-Young , Lee Su-Jae 
Published: February 2017

AbstractBreast cancer is a widely distributed type of cancer in women worldwide, and tumor relapse is the major cause of breast cancer death. In breast cancers, the acquisition of metastatic ability, which is responsible for tumor relapse and poor clinical outcomes, has been linked to the acquisition of the epithelial-mesenchymal transition (EMT) program and self-renewal traits (CSCs) via various signaling pathways. These phenomena confer resistance during current therapies, thus creating a major hurdle in radiotherapy/chemotherapy. The role of very low doses of radiation (LDR) in the context of EMT has not yet to be thoroughly explored. Here, we report that a 0.1 Gy radiation dose reduces cancer progression by deactivating the JAK1/STAT3 pathway. Furthermore, LDR exposure also reduces sphere formation and inhibits the self-renewal ability of breast cancer cells, resulting in an attenuated CD44+/CD24− population. Additionally, in vivo findings support our data, providing evidence that LDR is a promising option for future treatment strategies to prevent cancer metastasis in breast cancer cases.
Nonlinear Black Phosphorus for Ultrafast Optical Switching
Authors: Uddin Siam , Debnath Pulak C. , Park Kichul , Song Yong-Won 
Published: February 2017

AbstractThe outstanding electronic and optical properties of black phosphorus (BP) in a two-dimensional (2D) but unique single-layer puckered structure have opened intense research interest ranging from fundamental physics to nanoscale applications covering the electronic and optical domains. The direct and controllable electronic bandgap facilitating wide range of tunable optical response coupled with high anisotropic in-plane properties made BP a promising nonlinear optical material for broadband optical applications. Here, we investigate ultrafast optical switching relying on the optical nonlinearity of BP. Wavelength conversion for modulated signals whose frequency reaches up to 20 GHz is realized by four-wave-mixing (FWM) with BP-deposited D-shaped fiber. In the successful demonstration of the FWM based wavelength conversion, performance parameter has been increased up to ~33% after employing BP in the device. It verifies that BP is able to perform efficient optical switching in the evanescent field interaction regime at very high speed. Our results might suggest that BP-based ultra-fast photonics devices could be potentially developed for broadband applications.
A Microfabricated 96-Well 3D Assay Enabling High-Throughput Quantification of Cellular Invasion Capabilities
Authors: Hao Rui , Wei Yuanchen , Li Chaobo , Chen Feng , Chen Deyong , Zhao Xiaoting , Luan Shaoliang , Fan Beiyuan , Guo Wei , Wang Junbo , Chen Jian 
Published: February 2017

AbstractThis paper presents a 96-well microfabricated assay to study three-dimensional (3D) invasion of tumor cells. A 3D cluster of tumor cells was first generated within each well by seeding cells onto a micro-patterned surface consisting of a central fibronectin-coated area that promotes cellular attachment, surrounded by a poly ethylene glycol (PEG) coated area that is resistant to cellular attachment. Following the formation of the 3D cell clusters, a 3D collagen extracellular matrix was formed in each well by thermal-triggered gelation. Invasion of the tumor cells into the extracellular matrix was subsequently initiated and monitored. Two modes of cellular infiltration were observed: A549 cells invaded into the extracellular matrix following the surfaces previously coated with PEG molecules in a pseudo-2D manner, while H1299 cells invaded into the extracellular matrix in a truly 3D manner including multiple directions. Based on the processing of 2D microscopic images, a key parameter, namely, equivalent invasion distance (the area of invaded cells divided by the circumference of the initial cell cluster) was obtained to quantify migration capabilities of these two cell types. These results validate the feasibility of the proposed platform, which may function as a high-throughput 3D cellular invasion assay.