bluuebunny/crossref_metadata_2025_split huggingface dataset:
Tracing heavy metals in ‘swine manure - maggot - chicken’ production chain
Authors: Wang Wanqiang , Zhang Wenjuan , Wang Xiaoping , Lei Chaoliang , Tang Rui , Zhang Feng , Yang Qizhi , Zhu Fen 
Published: August 2017

AbstractWith the development of large-scale livestock farming, manure pollution has drawn much attention. Conversion by insects is a rapid and cost-effective new method for manure management. Swine manure conversion with maggots (Musca domestica larvae) has developed, and the harvested maggots are often used as animal feed. However, the flow of heavy metals from manure to downstream processes cannot be ignored, and therefore, heavy metal content was measured in untreated raw manure, maggot-treated manure, harvested maggots and maggot-eating chickens (chest muscle and liver) to evaluate potential heavy metal risks. The levels of zinc, copper, chromium, selenium, cadmium and lead had significant differences between untreated raw manure and maggot-treated manure. The concentrations of all detected heavy metals, except for cadmium and selenium, in maggots met the limits established by the feed or feed additive standards of many countries. The bioaccumulation factor (BAF) of heavy metals decreased with the increase of the maggot instar, indicating that heavy metals were discharged from the bodies of maggots with the growth of maggots. Also, the contents of overall heavy metals in chickens fed harvested maggots met the standards for food. In conclusion, regarding heavy metals, it is eco-safe to use maggots in manure management.
Direct observation of multiple rotational stacking faults coexisting in freestanding bilayer MoS2
Authors: Li Zuocheng , Yan Xingxu , Tang Zhenkun , Huo Ziyang , Li Guoliang , Jiao Liying , Liu Li-Min , Zhang Miao , Luo Jun , Zhu Jing 
Published: August 2017

AbstractElectronic properties of two-dimensional (2D) MoS2 semiconductors can be modulated by introducing specific defects. One important type of defect in 2D layered materials is known as rotational stacking fault (RSF), but the coexistence of multiple RSFs with different rotational angles was not directly observed in freestanding 2D MoS2 before. In this report, we demonstrate the coexistence of three RSFs with three different rotational angles in a freestanding bilayer MoS2 sheet as directly observed using an aberration-corrected transmission electron microscope (TEM). Our analyses show that these RSFs originate from cracks and dislocations within the bilayer MoS2. First-principles calculations indicate that RSFs with different rotational angles change the electronic structures of bilayer MoS2 and produce two new symmetries in their bandgaps and offset crystal momentums. Therefore, employing RSFs and their coexistence is a promising route in defect engineering of MoS2 to fabricate suitable devices for electronics, optoelectronics, and energy conversion.
Secondary compound hypothesis revisited: Selected plant secondary metabolites promote bacterial degradation of cis-1,2-dichloroethylene (cDCE)
Authors: Fraraccio Serena , Strejcek Michal , Dolinova Iva , Macek Tomas , Uhlik Ondrej 
Published: August 2017

AbstractCis-1,2-dichloroethylene (cDCE), which is a common hazardous compound, often accumulates during incomplete reductive dechlorination of higher chlorinated ethenes (CEs) at contaminated sites. Simple monoaromatics, such as toluene and phenol, have been proven to induce biotransformation of cDCE in microbial communities incapable of cDCE degradation in the absence of other carbon sources. The goal of this microcosm-based laboratory study was to discover non-toxic natural monoaromatic secondary plant metabolites (SPMEs) that could enhance cDCE degradation in a similar manner to toluene and phenol. Eight SPMEs were selected on the basis of their monoaromatic molecular structure and widespread occurrence in nature. The suitability of the SPMEs chosen to support bacterial growth and to promote cDCE degradation was evaluated in aerobic microbial cultures enriched from cDCE-contaminated soil in the presence of each SPME tested and cDCE. Significant cDCE depletions were achieved in cultures enriched on acetophenone, phenethyl alcohol, p-hydroxybenzoic acid and trans-cinnamic acid. 16S rRNA gene sequence analysis of each microbial community revealed ubiquitous enrichment of bacteria affiliated with the genera Cupriavidus, Rhodococcus, Burkholderia, Acinetobacter and Pseudomonas. Our results provide further confirmation of the previously stated secondary compound hypothesis that plant metabolites released into the rhizosphere can trigger biodegradation of environmental pollutants, including cDCE.
The [PSI
+] yeast prion does not wildly affect proteome composition whereas selective pressure exerted on [PSI
+] cells can promote aneuploidy
Authors: Chan Patrick H. W. , Lee Lisa , Kim Erin , Hui Tony , Stoynov Nikolay , Nassar Roy , Moksa Michelle , Cameron Dale M. , Hirst Martin , Gsponer Joerg , Mayor Thibault 
Published: August 2017

AbstractThe yeast Sup35 protein is a subunit of the translation termination factor, and its conversion to the [PSI+] prion state leads to more translational read-through. Although extensive studies have been done on [PSI+], changes at the proteomic level have not been performed exhaustively. We therefore used a SILAC-based quantitative mass spectrometry approach and identified 4187 proteins from both [psi−] and [PSI+] strains. Surprisingly, there was very little difference between the two proteomes under standard growth conditions. We found however that several [PSI+] strains harbored an additional chromosome, such as chromosome I. Albeit, we found no evidence to support that [PSI+] induces chromosomal instability (CIN). Instead we hypothesized that the selective pressure applied during the establishment of [PSI+]-containing strains could lead to a supernumerary chromosome due to the presence of the ade1-14 selective marker for translational read-through. We therefore verified that there was no prevalence of disomy among newly generated [PSI+] strains in absence of strong selection pressure. We also noticed that low amounts of adenine in media could lead to higher levels of mitochondrial DNA in [PSI+] in ade1-14 cells. Our study has important significance for the establishment and manipulation of yeast strains with the Sup35 prion.
Evidence of a reduction in cloud condensation nuclei activity of water-soluble aerosols caused by biogenic emissions in a cool-temperate forest
Authors: Müller Astrid , Miyazaki Yuzo , Tachibana Eri , Kawamura Kimitaka , Hiura Tsutom 
Published: August 2017

AbstractBiogenic organic aerosols can affect cloud condensation nuclei (CCN) properties, and subsequently impact climate change. Large uncertainties exist in how the difference in the types of terrestrial biogenic sources and the abundance of organics relative to sulfate affect CCN properties. For the submicron water-soluble aerosols collected for two years in a cool-temperate forest in northern Japan, we show that the hygroscopicity parameter κCCN (0.44 ± 0.07) exhibited a distinct seasonal trend with a minimum in autumn (κCCN = 0.32–0.37); these κCCN values were generally larger than that of ambient particles, including water-insoluble fractions. The temporal variability of κCCN was controlled by the water-soluble organic matter (WSOM)-to-sulfate ratio (R2 > 0.60), where the significant reduction of κCCN in autumn was linked to the increased WSOM/sulfate ratio. Positive matrix factorization analysis indicates that α-pinene-derived secondary organic aerosol (SOA) substantially contributed to the WSOM mass (~75%) in autumn, the majority of which was attributable to emissions from litter/soil microbial activity near the forest floor. These findings suggest that WSOM, most likely α-pinene SOA, originated from the forest floor can significantly suppress the aerosol CCN activity in cool-temperate forests, which have implications for predicting climate effects by changes in biogenic emissions in future.
Evaluation of thermodynamics, formation energetics and electronic properties of vacancy defects in CaZrO3
Authors: Alay-e-Abbas Syed Muhammad , Nazir Safdar , Cottenier Stefaan , Shaukat Ali 
Published: August 2017

AbstractUsing first-principles total energy calculations we have evaluated the thermodynamics and the electronic properties of intrinsic vacancy defects in orthorhombic CaZrO3. Charge density calculations and the atoms-in-molecules concept are used to elucidate the changes in electronic properties of CaZrO3 upon the introduction of vacancy defects. We explore the chemical stability and defect formation energies of charge-neutral as well as of charged intrinsic vacancies under various synthesis conditions and also present full and partial Schottky reaction energies. The calculated electronic properties indicate that hole-doped state can be achieved in charge neutral Ca vacancy containing CaZrO3 under oxidation condition, while reduction condition allows to control the electrical conductivity of CaZrO3 depending on the charge state and concentration of oxygen vacancies. The clustering of neutral oxygen vacancies in CaZrO3 is examined as well. This provides useful information for tailoring the electronic properties of this material. We show that intentional incorporation of various forms of intrinsic vacancy defects in CaZrO3 allows to considerably modify its electronic properties, making this material suitable for a wide range of applications.
Acceleration of osteoblast differentiation by a novel osteogenic compound, DMP-PYT, through activation of both the BMP and Wnt pathways
Authors: Bae Su Jung , Kim Hye Joo , Won Hee Yeon , Min Yong Ki , Hwang Eun Sook 
Published: August 2017

AbstractOsteoblast differentiation is regulated through the successive activation of signaling molecules by a complex interplay of extracellular signals such as bone morphogenetic protein (BMP) and Wnt ligands. Numerous studies have identified natural as well as synthetic compounds with osteogenic activity through the regulation of either BMP/SMADs or the Wnt/β-catenin pathway. Here, we attempted to isolate small molecules that concurrently activated both SMADs and β-catenin, which led to the discovery of a novel potent osteogenic compound, DMP-PYT. Upon BMP2 stimulation, DMP-PYT substantially increased osteoblast differentiation featured by enhanced expression of osteoblast-specific genes and accelerated calcification through activation of BMPs expression. DMP-PYT promoted BMP2-induced SMAD1/5/8 phosphorylation and β-catenin expression, the latter in a BMP2-independent manner. DMP-PYT alone enhanced nuclear localization of β-catenin to promote the DNA-binding and transcriptional activity of T-cell factor, thereby resulting in increased osteoblast differentiation in the absence of BMP2. Most importantly, DMP-PYT advanced skeletal development and bone calcification in zebrafish larvae. Conclusively, DMP-PYT strongly stimulated osteoblast differentiation and bone formation in vitro and in vivo by potentiating BMP2-induced activation of SMADs and β-catenin. These results suggest that DMP-PYT may have beneficial effects for preventing and for treating osteoporosis.
Selection of nanobodies with broad neutralizing potential against primary HIV-1 strains using soluble subtype C gp140 envelope trimers
Authors: Koch Kathrin , Kalusche Sarah , Torres Jonathan L. , Stanfield Robyn L. , Danquah Welbeck , Khazanehdari Kamal , von Briesen Hagen , Geertsma Eric R. , Wilson Ian A. , Wernery Ulrich , Koch-Nolte Friedrich , Ward Andrew B. , Dietrich Ursula 
Published: August 2017

AbstractBroadly neutralizing antibodies (bnAbs) against HIV-1 protect from infection and reduce viral load upon therapeutic applications. However no vaccine was able so far to induce bnAbs demanding their expensive biotechnological production. For clinical applications, nanobodies (VHH) derived from heavy chain only antibodies from Camelidae, may be better suited due to their small size, high solubility/stability and extensive homology to human VH3 genes. Here we selected broadly neutralizing nanobodies by phage display after immunization of dromedaries with different soluble trimeric envelope proteins derived from HIV-1 subtype C. We identified 25 distinct VHH families binding trimeric Env, of which 6 neutralized heterologous primary isolates of various HIV-1 subtypes in a standardized in vitro neutralization assay. The complementary neutralization pattern of two selected VHHs in combination covers 19 out of 21 HIV-1 strains from a standardized panel of epidemiologically relevant HIV-1 subtypes. The CD4 binding site was preferentially targeted by the broadly neutralizing VHHs as determined by competition ELISAs and 3D models of VHH-Env complexes derived from negative stain electron microscopy. The nanobodies identified here are excellent candidates for further preclinical/clinical development for prophylactic and therapeutic applications due to their potency and their complementary neutralization patterns covering the majority of epidemiologically relevant HIV-1 subtypes.
Self-assembly of ternary hollow microspheres with strong wideband microwave absorption and controllable microwave absorption properties
Authors: Zeng Qiang , Chen Ping , Yu Qi , Chu Hai-rong , Xiong Xu-hai , Xu Dong-wei , Wang Qi 
Published: August 2017

AbstractIn this study, we report a simple and efficient two-step method consisting of water-in-oil (W/O) emulsion technique and subsequent annealing process for synthesizing the hollow reduced graphene oxide microspheres embedded with Co nanoparticles (Air@rGO€Co). The microspheres showed good electromagnetic properties because of the coexistence of magnetic loss and dielectric loss to microwaves. The minimum reflection loss (RLmin) value of S1.5 reaches −68.1 dB at 13.8 GHz with a thickness of 2.2 mm, and the absorption bandwidth (lower than −10 dB) is 7.1 GHz covering from 10.9 GHz to 18.0 GHz. More interestingly, we can easily controll the microwave absorbing properties of the microspheres by changing the ratio of the two components in the composites. The excellent electromagnetic match at the corresponding resonance peaks for dielectric and magnetic loss play an important role in improving microwave absorption property. Our study provides a good potential method for preparation of lightweight microwave absorbing materials.
Re-characterization of the Glomerulopathy in CD2AP Deficient Mice by High-Resolution Helium Ion Scanning Microscopy
Authors: Tsuji Kenji , Păunescu Teodor G. , Suleiman Hani , Xie Dongping , Mamuya Fahmy A. , Miner Jeffrey H. , Lu Hua A. Jenny 
Published: August 2017

AbstractHelium ion scanning microscopy (HIM) is a novel technology that directly visualizes the cell surface ultrastructure without surface coating. Despite its very high resolution, it has not been applied extensively to study biological or pathology samples. Here we report the application of this powerful technology to examine the three-dimensional ultrastructural characteristics of proteinuric glomerulopathy in mice with CD2-associated protein (CD2AP) deficiency. HIM revealed the serial alteration of glomerular features including effacement and disorganization of the slit diaphragm, followed by foot process disappearance, flattening and fusion of major processes, and eventual transformation into a podocyte sheet as the disease progressed. The number and size of the filtration slit pores decreased. Strikingly, numerous “bleb” shaped microprojections were observed extending from podocyte processes and cell body, indicating significant membrane dynamics accompanying CD2AP deficiency. Visualizing the glomerular endothelium and podocyte-endothelium interface revealed the presence of endothelial damage, and disrupted podocyte and endothelial integrity in 6 week-old Cd2ap-KO mice. We used the HIM technology to investigate at nanometer scale resolution the ultrastructural alterations of the glomerular filtration apparatus in mice lacking the critical slit diaphragm-associated protein CD2AP, highlighting the great potential of HIM to provide new insights into the biology and (patho)physiology of glomerular diseases.
Novel approach to determination of sorption in pervaporation process: a case study of isopropanol dehydration by polyamidoimideurea membranes
Authors: Pulyalina A. , Polotskaya G. , Goikhman M. , Podeshvo I. , Chernitsa B. , Kocherbitov V. , Toikka A. 
Published: August 2017

AbstractDevelopment of novel membranes with optimal performance, selectivity, and stability is a key research area in membrane technology. In the present work aromatic polyamidoimideurea (PAIU) is synthesized and tested as promising membrane material for separation of water and alcohol mixtures. The PAIU membrane structure, density, and transport properties are studied. Mass transfer of water and isopropanol through the membrane is estimated by sorption and pervaporation tests to determine equilibrium sorption degree, diffusion coefficients, flux through the membrane, and separation factor. Two techniques of sorption study from liquid and from vapor phases are used as novel approach to experimental study of mass transfer. The vapor sorption calorimetry permits to analyze the behavior of the polymer material in sorption process. In pervaporation of water–isopropanol mixture, almost pure water mainly permeates through PAIU membrane. To improve the performance, a double layer membrane containing a thin PAIU layer on the surface of porous poly(phenylene oxide) support is developed. The double layer membrane is extremely effective in dehydration of isopropanol.
On mechanism behind UV-A light enhanced antibacterial activity of gallic acid and propyl gallate against Escherichia coli O157:H7
Authors: Wang Qingyang , de Oliveira Erick Falcao , Alborzi Solmaz , Bastarrachea Luis J. , Tikekar Rohan V. 
Published: August 2017

AbstractPossible mechanisms behind the enhanced antimicrobial activity of gallic acid (GA) and its ester propyl gallate (PG) in the presence of UV-A light against Escherichia coli O157:H7 were investigated. GA by itself is a mild antimicrobial and has a pro-oxidant ability. We found that the presence of UV-A light increases the uptake of GA by the bacteria. Once GA is internalized, the interaction between GA and UV-A induces intracellular ROS formation, leading to oxidative damage. Concurrently, GA + UV-A also inhibits the activity of superoxide dismutase (SOD), magnifying the imbalance of redox status of E. coli O157:H7. In addition to ROS induced damage, UV-A light and GA also cause injury to the cell membrane of E. coli O157:H7. UV-A exposed PG caused oxidative damage to the cell and significantly higher damage to the cell membrane than GA + UV-A treatment, explaining its higher effectiveness than GA + UV-A treatment. The findings presented here may be useful in developing new antimicrobial sanitation technologies for food and pharmaceutical industries.
Field-based species identification of closely-related plants using real-time nanopore sequencing
Authors: Parker Joe , Helmstetter Andrew J. , Devey Dion , Wilkinson Tim , Papadopulos Alexander S. T. 
Published: August 2017

AbstractAdvances in DNA sequencing and informatics have revolutionised biology over the past four decades, but technological limitations have left many applications unexplored. Recently, portable, real-time, nanopore sequencing (RTnS) has become available. This offers opportunities to rapidly collect and analyse genomic data anywhere. However, generation of datasets from large, complex genomes has been constrained to laboratories. The portability and long DNA sequences of RTnS offer great potential for field-based species identification, but the feasibility and accuracy of these technologies for this purpose have not been assessed. Here, we show that a field-based RTnS analysis of closely-related plant species (Arabidopsisspp.) has many advantages over laboratory-based high-throughput sequencing (HTS) methods for species level identification and phylogenomics. Samples were collected and sequenced in a single day by RTnS using a portable, “al fresco” laboratory. Our analyses demonstrate that correctly identifying unknown reads from matches to a reference database with RTnS reads enables rapid and confident species identification. Individually annotated RTnS reads can be used to infer the evolutionary relationships ofA.thaliana. Furthermore, hybrid genome assembly with RTnS and HTS reads substantially improved upon a genome assembled from HTS reads alone. Field-based RTnS makes real-time, rapid specimen identification and genome wide analyses possible.
Formation of side discharges in dielectric barrier discharge
Authors: Fan Weili , Sheng Zhengming , Dong Lifang , Liu Fucheng , Zhong Xiaoxia , Cui Yiqian , Hao Fang , Du Tian 
Published: August 2017

AbstractPattern formation and self-organization are fascinating phenomena found widely in nature and in laboratory environment such as dielectric barrier discharge (DBD). Significant efforts have been made to explain the dynamic pattern formation. In DBD, the formation of side discharges is generally supposed to be a key factor responsible for diversity and spatial-temporal symmetry breaking of pattern formation. However, it is still not clear how such discharges are induced. Here, we present the observations of side discharges in a filamentary dielectric barrier discharge from both numerical simulations and experiments. Two-dimensional particle-in-cell simulations with Monte Carlo collisions included have revealed formation dynamics of side discharges, suggesting that transverse plasma diffusion and ion induced secondary electron emission play critical roles. Moreover, a novel honeycomb superlattice pattern is observed in experiment, where the side discharges associated with honeycomb superlattice are verified by utilizing a high speed camera. Experimental observations and numerical simulation are in good agreement.
Influence of film mulching on soil microbial community in a rainfed region of northeastern China
Authors: Dong Wenyi , Si Pengfei , Liu Enke , Yan Changrong , Zhang Zhe , Zhang Yanqing 
Published: August 2017

AbstractInformation about the effect of plastic film mulching (PFM) on the soil microbial communities of rainfed regions remains scarce. In the present study, Illumina Hiseq sequencer was employed to compare the soil bacterial and fungal communities under three treatments: no mulching (NM), spring mulching (SM) and autumn mulching (AM) in two layers (0–10 and, 10–20 cm). Our results demonstrated that the plastic film mulching (PFM) application had positive effects on soil physicochemical properties as compared to no-mulching (NM): higher soil temperature (ST), greater soil moisture content (SMC) and better soil nutrients. Moreover, mulching application (especially AM) caused a significant increase of bacterial and fungal richness and diversity and played important roles in shaping microbial community composition. These effects were mainly explained by the ST and SMC induced by the PFM application. The positive effects of AM and SM on species abundances were very similar, while the AM harbored relatively more beneficial microbial taxa than the SM, e.g., taxa related to higher degrading capacity and nutrient cycling. According to the overall effects of AM application on ST, SMC, soil nutrients and microbial diversity, AM is recommended during maize cultivation in rain-fed region of northeast China.