bluuebunny/crossref_metadata_2025_split huggingface dataset:
Phanerozoic development of tiering in soft substrata suspension-feeding communities
Authors: Bottjer David J. , Ausich William I. 
Published: July 2016

Tiering is the vertical distribution of organisms within the benthic boundary layer. Primary tierers are suspension-feeding organisms with a body or burrow that intersects the seafloor. Secondary tierers are suspension-feeders that maintain positions above or below the sediment-water interface as either epizoans on primary tierers and plants or by living in the burrows of primary tierers. Different primary tierers from soft substrata, nonreef, shallow subtidal shelf and epicontinental sea settings have had different tiering histories, resulting largely from contrasting constructional and phylogenetic constraints. Primary colonial tierers generally occupied lower epifaunal tiers during the Paleozoic and Mesozoic, but since the Cretaceous they have been dominant in the highest tier (+ 20 to +50 cm). Primary echinoderm tierers have been almost exclusively epifaunal, and from the Paleozoic through the Jurassic they were present throughout the epifaunal tiered structure. Although primary bivalve tierers have been both epifaunal and infaunal, they have occupied only lower epifaunal tiers, whereas they have adapted to all levels of the infaunal tiering structure, particularly from the late Paleozoic through the Recent. Brachiopods have lived primarily in tiers directly above or below the water-sediment interface and have not contributed significantly to tiering complexity.Of the numerous physical and biotic processes and constraints that affect shallow marine benthos, a few have contributed more significantly to changes in tiering patterns. Trends for increasing body size could have accounted for most of the development of tiering complexity up to +50 cm and down to –12 cm. Development of tiering above +50 cm could have been due to processes which would have yielded greater feeding capability, such as competitive interactions for a place from which to feed or adaptations to velocity gradients in the hydrodynamic boundary layer. The most significant process for development of infauanl tiering below –12 cm appears to have been as an adaptive response for predator avoidance.Unlike infaunal tiering, which never declined after it developed, epifaunal tiering has undergone a general reduction twice. Reduction in epifaunal tiering at the end of the Paleozoic appears to have been the result of the mass extinction at this time, whereas long-term biotic processes seem to have been more important for the tiering decline at the end of the Mesozoic. Tiering structure through the Phanerozoic was thus produced through interactions of a number of physical and biotic factors, tempered by constructional and phylogenetic constraints of each primary tierer group.
A thermal model of the sailback pelycosaur
Authors: Haack Steven C. 
Published: July 2016

Standard techniques of energy exchange analysis are applied to modelling the thermal regimes of several species of sailback pelycosaurs. Of particular interest is the role played by the sail in thermoregulation. Although the sail did increase the rate at which the model could warm up in the morning, its effectiveness fell short of previous estimates. The sail increased the daytime internal temperature by typically 3°C to 6°C. The more massive subjects had the highest temperature increases owing partly to their higher thermal inertia and partly to their disproportionately large sails. The sail had no impact upon the nocturnal minimums in temperature.Overheating does not appear to have been a significant problem in the Permian environment, particularly in view of the high thermal inertia of the subjects modeled. When overheating occurred, the sail was of limited value for dumping excess heat.
Equations of motion for post-mortem sinking of cephalopod shells and the sinking of Nautilus
Authors: Weaver J. Scott , Chamberlain John A. 
Published: July 2016

Consideration of the physics of sinking of hollow, rigid bodies leads to equations of motion for sinking cephalopod shells. We have derived equations of motion for three post-mortem sinking situations: sinking with a fixed amount of water in the phragmocone; rapid phragmocone filling (no siphuncular tube); and slow phragmocone filling (siphuncular tube intact). In all three cases sinking speed can be closely approximated by the terminal velocity calculated from the total weight, buoyancy, and drag parameters of the shell.Experiments on modern Nautilus shells yield sinking velocities in agreement with calculated values. The experiments also show that orientation of a sinking Nautilus shell varies as the phragmocone fills with water. With small negative buoyancy the shell sinks with its plane of symmetry upright, but as it fills, it begins to rock from side to side and leans over and sinks with its plane of symmetry horizontal when the camerae are about 55% full.The maximum sinking speed of upright adult Nautilus shells is approximately 30 cm/sec, which appears to be too small for embedding in the bottom upon impact. The maximum depth to which Nautilus sinks in the upright position ranges from about 7 m for rapidly filling shells to as much as 600 m for slowly filling shells. In the latter case, the shell will continue to fill after coming to rest on the bottom, and the stability of the vertical orientation will be removed within 1 or 2 days. Thus, primary vertical preservation of cephalopod shells indicates water depths less than about 10 m.
Determinants of diversity in higher taxonomic categories
Authors: Valentine James W. 
Published: July 2016

It is often assumed that, if a few species are introduced into a relatively empty environment, the subsequent diversification will take the form of a logistic growth curve, rising to an equilibrium level of species richness. The diversifications of taxa in higher categories commonly resemble logistic curves, although there are no well-defined theoretical bases for such a resemblance.A model of diversification of taxa in higher categories is based on the notion that many taxa originate rapidly. Relatively small changes leading to new species occur at a high frequency, while larger changes leading to progressively higher taxa occur with progressive rarity. During diversification in an empty environment, few large changes will occur before the environment is filled. The rate of filling, relative to the rate of production of higher taxa, determines the richness of taxa in higher categories and gives the diversification curves a logistic appearance although the maximum level achieved is not an equilibrium. Subsequently, opportunities for diversification will generally lead only to the appearance of taxa in progressively lower categories.
Paleobotany: Perspectives in 1980
Authors: Knoll Andrew H. , Rothwell Gar W. 
Published: July 2016

In the past twenty years, both knowledge of fossil plants and ways of looking at the paleobotanical record have expanded significantly. Studies of Precambrian microfossils have provided insight on early photoautotrophs, while fundamental changes in perceptions of Silurian and Devonian plant remains have clarified our understanding of the colonization of land, as well as the subsequent evolution of complex stems, leaves, and the seed habit. A recurring question concerns the phylogenetic relationships of gymnosperms: is the gymnospermy found in various living and extinct taxa the result of evolutionary convergence or of common descent? Rapidly accumulating data on the reproductive and developmental biology of Paleozoic seed ferns is reopening debate on this issue. The mystery of angiosperm origins remains “abominable”, but the past two decades of research have seen convincing documentation of the initial radiation and rise to taxonomic and ecological dominance of the flowering plants.While phylogenetic and systematic botany remain at the core of paleobotanical research, increased attention is being devoted to studies of ontogeny and reproductive biology, paleoecology, taphonomy, paleophytochemistry, paleoclimatology, and paleobiogeography. Studies of evolutionary rates and diversity are in their infancy, but initial results permit an optimistic appraisal of the contributions that paleobotanists can make to evolutionary paleontology.
A factor analytic description of the Phanerozoic marine fossil record
Authors: Sepkoski J. John 
Published: July 2016

Data on numbers of marine families within 91 metazoan classes known from the Phanerozoic fossil record are analyzed. The distribution of the 2800 fossil families among the classes is very uneven, with most belonging to a small minority of classes. Similarly, the stratigraphic distribution of the classes is very uneven, with most first appearing early in the Paleozoic and with many of the smaller classes becoming extinct before the end of that era. However, despite this unevenness, a Q-mode factor analysis indicates that the structure of these data is rather simple. Only three factors are needed to account for more than 90% of the data. These factors are interpreted as reflecting the three great “evolutionary faunas” of the Phanerozoic marine record: a trilobite-dominated Cambrian fauna, a brachiopod-dominated later Paleozoic fauna, and a mollusc-dominated Mesozoic-Cenozoic, or “modern,” fauna. Lesser factors relate to slow taxonomic turnover within the major faunas through time and to unique aspects of particular taxa and times.Each of the three major faunas seems to have its own characteristic diversity so that its expansion or contraction appears as being intimately associated with a particular phase in the history of total marine diversity. The Cambrian fauna expands rapidly during the Early Cambrian radiations and maintains dominance during the Middle to Late Cambrian “equilibrium.” The Paleozoic fauna then ascends to dominance during the Ordovician radiations, which increase diversity dramatically; this new fauna then maintains dominance throughout the long interval of apparent equilibrium that lasts until the end of the Paleozoic Era. The modern fauna, which slowly increases in importance during the Paleozoic Era, quickly rises to dominance with the Late Permian extinctions and maintains that status during the general rise in diversity to the apparent maximum in the Neogene. The increase in diversity associated with the expansion of each new fauna appears to coincide with an approximately exponential decline of the previously dominant fauna, suggesting possible displacement of each evolutionary fauna by its successor.
Arguments for a glossopterid ancestry of angiosperms
Authors: Retallack Greg , Dilcher David L. 
Published: July 2016

Almost every living and fossil group of gymnosperms has been proposed as a possible ancestor of angiosperms. A common problem with many of these proposals is their reliance on hypothetical intermediate forms. Another common problem is finding correctly-oriented organs homologous to all the important reproductive structures of angiosperms.These problems are least troublesome for a glossopterid origin of angiosperms. Recently discovered ovule-bearing organs of these plants may represent evolutionary intermediates, or analogous plants, between glossopterids and angiosperms. According to recent reinterpretations of glossopterid ovule-bearing organs, they have structures in an orientation which may be homologous with both the outer ovular integument and the carpel of angiosperms. Considering the reproductive and vegetative features of glossopterids, the hypothesis that they may be part of a stock ancestral to angiosperms should be seriously considered.
Beginnings of biospheric evolution and their biogeochemical consequences
Authors: Cloud Preston 
Published: July 2016

The beginnings of biospheric evolution had far-reaching biogeochemical consequences for the related evolutions of atmosphere, hydrosphere, and lithosphere. Feedback to the sedimentary record from these several simultaneously interacting aspects of crustal evolution provides the evidence from which historical biogeology is reconstructed. The interpretation of that evidence, however, is beset with pitfalls. Both biogenicity and a primary origin need to be demonstrated, or confidence limits established for each supposed morphological and biochemical fossil. Relevance to biospheric or related evolutions must be critically evaluated for every geochemical and sedimentological anomaly.Indirect evidence suggests primitive, oxygen-generating autotrophy by ∼ 3.8 × 109 years ago (3.8 Gyr or gigayears), while free O2 first began to accumulate only ∼ 2 Gyr ago. Various reduced substances in the atmosphere and in solution functioned as oxygen sinks, keeping photolytic and biogenic O2 at levels tolerable by primitive anaerobic and microaerophilic procaryotes.The oldest demonstrably biogenic and certainly primary microstructures are procaryotes from ∼ or > 2 Gyr old strata around Lake Superior. Improved biologic O2 mediation, continued carbon segregation, and filling of O2 sinks initiated atmospheric O2 buildup, leading to an ozone screen ∼ or < 2 Gyr ago. Consequences were essential termination of banded iron formation, onset of red beds, and O2 shielding of anaerobic intracellular processes, heralding the eucaryotic cell.Probable eucaryotes appear in ∼ 1.3 Gyr old rocks in California as large unicells and large-diameter, branched, septate filaments. Likely consequences of eucaryotic evolution were increased atmospheric O2, increased carbonate and sulfate ion, and the rise of sexuality. Meiosis had definitely evolved > 0.7 Gyr ago and probably > 1.3 Gyr ago, perhaps simultaneously with the mitosing cell. Whatever the timing, it completed the evolution of the eucaryotic heredity mechanism and foreshadowed (given sufficient free O2) the differentiation of tissues, organs, and advanced forms of life—with all their potential for biogeochemical feedback to sedimentary, diagenetic, and metallogenic processes. The first Metazoa appeared ∼ 0.7 Gyr ago. Being dependent on simple diffusion for O2, they lacked exoskeletons. The latter appeared, perhaps 0.6 Gyr ago, when increasing O2 levels favored the emergence of more advanced respiratory systems.
The shape of evolution: a comparison of real and random clades
Authors: Gould Stephen Jay , Raup David M. , Sepkoski J. John , Schopf Thomas J. M. , Simberloff Daniel S. 
Published: July 2016

The history of life is replete with apparent order. Much of this order may reflect the deterministic causes conventionally invoked, but we cannot be sure until we measure and subtract the order that arises in simple random systems. Consequently, we have constructed a random model that builds evolutionary trees by allowing lineages to branch and become extinct at equal probabilities. We proceed by dividing our simulated tree into clades and by comparing their sizes and shapes with the patterns exhibited by “real” clades as recorded by fossils.We regard the similarity of real and random clades as the outstanding result of this comparison. In both real and random systems, extinct clades arising after an “ecological barrel” had been filled have their maximum diversity at the midpoint of their duration; clades arising during the initial “filling” reach an earlier climax during this preequilibrial period of rapid diversification. However, some potential differences also emerge. Clades still living are much larger than extinct clades. We may attribute this to the morphological superiority of survivors, but we can also simulate it in a model that chooses the originators of clades at random. Real clades undergo greater fluctuations in diversity than do random clades, but the effect is not marked.
How rare is phyletic gradualism and what is its evolutionary significance? Evidence from Jurassic bivalves
Authors: Hallam Anthony 
Published: July 2016

Both intensive analysis of Gryphaea and an extensive survey of Jurassic bivalves in Europe supports the punctuated equilibria model of speciation, with the exception of phyletic size increase, which appears within the limits of the data to be gradualistic and affects at least a significant minority of species. The size increase takes place both within species and between successive species in a lineage. In Liassic Gryphaea, a combination of allometry in the ontogenetic development of the ancestral species and paedomorphosis led also to changes of shape up the sequence. The production of evolutionary trends by species selection is not supported.The favoured interpretation of phyletic size increase is a gradual delay in maturation time consequent upon a change in the organisms' adaptive strategy from the r-selected to the K-selected mode and is backed up by evidence on changing population numbers and distribution. An extinction/speciation model is proposed for neritic organisms based on fluctuating sea levels. Times of low sea level or regression correspond with times of high stress and hence high extinction among stenotopic organisms and increased rates of allopatric speciation, with r-selection as the dominant mode. Times of high sea level or transgression correspond with low extinction and speciation rates and increased freedom of migration. K-selection is the dominant mode and often leads to phyletic size increase provided the environment remains stable for a sufficiently long period.
Variability, evolutionary rates, and allometry in dwarfing lineages
Authors: Marshall Larry G. , Corruccini Robert S. 
Published: July 2016

Evolutionary “dwarfism” or “nanism” is the phenomenon in which a significant decrease in mean body size of a lineage (an ancestral-descendant sequence of populations) occurs through time. A detailed analysis of several Late Quaternary dwarfed marsupial lineages from Australia is given. Based on linear tooth dimensions of the dwarfed lineages, four points are considered: 1) percent dwarfing; 2) evolutionary rates of change of tooth dimensions; 3) variation within lineages before and after dwarfing; and 4) several aspects of multivariate dental allometry. [The lineages includeMacropus titan(fossil)—M. giganteus(Recent) andOsphranter cooperi(fossil)—O. robustus(Recent) in the family Macropodidae (kangaroos), andSarcophilus laniarius(fossil)—S. harrisii(Recent) in the family Dasyuridae (Tasmaniandevil).]Dental measurements led to these conclusions: 1) Species with the largest body size show the greatest size reduction, and the species with the smallest body size change the least. 2) Evolutionary rates for this reduction in Australian lineages are similar to comparable Post-Pleistocene dwarfed lineages in Europe. 3) Tooth width, especially posterior width, changes more rapidly than length. The first molar changes relatively slowly, especially in length. 4) Variability is higher in the dwarfed forms than in the larger ancestors. 5) Multivariate allometric rates of dwarfing are consistent with results for rates of change calculated in darwins for the relation between change in length and maximum width (and less so for the relation between M1 and M4 reduction). This pattern of dwarfing allometry is broadly similar to within-species allometry, and is quite dissimilar to synchronous interspecific allometry.Brief consideration is also given to taxonomy of dwarfing lineages and to problems of concurrent megafaunal extinctions. It is concluded that dwarfism is an adaptive process which is probably the result of a density-dependent factor(s) (i.e. a resource limited system).
Mammalian Faunal Dynamics of the Great American Interchange: Reply to an Alternative Interpretation
Authors: Webb S. David 
Published: July 2016

In their “alternative interpretation” Marshall and Hecht raise two interesting questions:
I)Is “Taxocene Analysis” a permissible approach to community evolution, and if so under what conditions?II)What really happened to the ten South American ungulate genera that vanished during the Early Pleistocene?As these are fundamentally different questions, I shall consider each separately.
Computer simulations of early land plant branching morphologies: canalization of patterns during evolution?
Authors: Niklas Karl J. 
Published: July 2016

Using computer simulations and a quantitative method for describing bifurcating structures, the morphology of branching patterns seen in early land plants is analyzed. Four types or models of random branching (regular, geometric, binomial, and poisson) are shown to adequately describe the range of observed branching in most early land plants. Approximately 57% of all randomly generated computer patterns show reiterative branching events (=three successive identical modes of branching). Artificial canalization of reiterative events results in branching patterns structurally analogous with that of ancient fossil plants. Simulated phylogenetic changes among early land plant lineages, based on parsimonious transitions in branching patterns, indicate that most observed trends can be related directly to those seen in randomly generating branching patterns in which “size” is increased. The trimerophyte to progymnosperm trend in changing branching patterns is an exception, since the binomial model describing the progymnosperms has not been simulated by random processes.While the apparent phylogenetic changes among early land plant groups do not require deterministic explanations, the transition from regular to geometric branching and the “canalization” of reiterative branching patterns may represent a grade level response to selective pressures related to mechanical design and vegetative reproduction.
Resolution analysis: A new approach to the gaps in the fossil record
Authors: Schindel David E. 
Published: July 2016

Fine-scale sampling and analysis of fossiliferous sequences have been used in the debate over gradual vs. punctuated evolutionary transitions between species. The time scale and completeness of these studied sequences can be evaluated using criteria based on compilations of sedimentation rates over different time spans. A set of procedures, herein termed “resolution analysis,” provides the means for estimating the time scale and quality of sequences from which evolutionary patterns are distilled. Seven such published studies are evaluated with these procedures. In general, most fossil sequences are too incomplete on fine time scales to show changes operating within a standing population. Short segments of some sequences have the potential to document nearly complete morphological histories on time scales approaching generation-to-generation processes. Resolution analysis is a necessary step in inferences regarding fossil evidence of evolutionary tempo and mode.Stratigraphic incompleteness necessarily results from the episodic nature of sedimentation. Many stratigraphic gaps result from minor, temporary shifts in sediment distribution, though other, more profound gaps result from changes in habitat conditions that must have had an effect on local biotic distribution. Analyzing paleontological patterns involves not only the positive evidence provided by fossiliferous strata, but also the negative evidence left as gaps by shifting habitat conditions. Thus, incomplete sequences may not be “flawed” records of continuous populations. Incomplete sequences may be a faithful, literal record of separate populations separated in time by local extinctions and re-invasions.