bluuebunny/crossref_metadata_2025_split huggingface dataset:
Flexible polarimetric probe for 3 × 3 Mueller matrix measurements of biological tissue
Authors: Forward Sarah , Gribble Adam , Alali Sanaz , Lindenmaier Andras A. , Vitkin I. Alex 
Published: September 2017

AbstractPolarimetry is a noninvasive method that uses polarised light to assess biophysical characteristics of tissues. A series of incident polarisation states illuminates a biological sample, and analysis of sample-altered polarisation states enables polarimetric tissue assessment. The resultant information can, for example, help quantitatively differentiate healthy from pathologic tissue. However, most bio-polarimetric assessments are performed using free-space optics with bulky optical components. Extension to flexible fibre-based systems is clinically desirable, but is challenging due to polarisation-altering properties of optical fibres. Here, we propose a flexible fibre-based polarimetric solution, and describe its design, fabrication, calibration, and initial feasibility demonstration in ex vivo tissue. The design is based on a flexible fibre bundle of six multimode optical fibres, each terminated with a distal polariser that ensures pre-determined output polarisation states. The resultant probe enables linear 3 × 3 Mueller matrix characterization of distal tissue. Potential in vivo Mueller matrix polarimetric tissue examinations in various directly-inaccessible body cavities are envisioned.
Effect of caloric restriction on gut permeability, inflammation markers, and fecal microbiota in obese women
Authors: Ott Beate , Skurk Thomas , Hastreiter Ljiljana , Lagkouvardos Ilias , Fischer Sandra , Büttner Janine , Kellerer Teresa , Clavel Thomas , Rychlik Michael , Haller Dirk , Hauner Hans 
Published: September 2017

AbstractRecent findings suggest an association between obesity, loss of gut barrier function and changes in microbiota profiles. Our primary objective was to examine the effect of caloric restriction and subsequent weight reduction on gut permeability in obese women. The impact on inflammatory markers and fecal microbiota was also investigated. The 4-week very-low calorie diet (VLCD, 800 kcal/day) induced a mean weight loss of 6.9 ± 1.9 kg accompanied by a reduction in HOMA-IR (Homeostasis model assessment-insulin resistance), fasting plasma glucose and insulin, plasma leptin, and leptin gene expression in subcutaneous adipose tissue. Plasma high-molecular weight adiponectin (HMW adiponectin) was significantly increased after VLCD. Plasma levels of high-sensitivity C-reactive protein (hsCRP) and lipopolysaccharide-binding protein (LBP) were significantly decreased after 28 days of VLCD. Using three different methods, gut paracellular permeability was decreased after VLCD. These changes in clinical parameters were not associated with major consistent changes in dominant bacterial communities in feces. In summary, a 4-week caloric restriction resulted in significant weight loss, improved gut barrier integrity and reduced systemic inflammation in obese women.
The Effect of Item Similarity and Response Competition Manipulations on Collaborative Inhibition in Group Recall
Authors: Zhang Huan , Fu Yao , Zhang Xingli , Shi Jiannong 
Published: September 2017

AbstractCollaborative inhibition refers to when people working together remember less than their predicted potential. The most common explanation for this effect is the retrieval-disruption hypothesis during collaborative recall. However, several recent studies have obtained conflicting results concerning this hypothesis. In the current study, item similarity was manipulated in Experiment 1 by requiring participants to study overlapping or non-overlapping unrelated wordlists. The unstructured instructions were then manipulated during a turn-taking recall task between conditions. The results showed that collaborative inhibition occurred for both overlapping and non-overlapping conditions. Subsequently, response competition during collaborative recall, in addition to item similarity, was manipulated in Experiment 2, and the results showed that when collaborative group members were instructed to recall in turn and monitor their partner’s recall (the medium- and high-response-competition conditions), collaborative inhibition occurred. However, no such effect was shown when collaborative group members were instructed not to communicate with each other, but to simply recall in turn while in a group (low-response-competition condition). Together, these results suggest that the conflicts between the findings of the aforementioned studies were probably caused by differing instructions, which induced response competition in collaborative settings. Aside from retrieval-disruption, other possible mechanisms underlying collaborative inhibition were also discussed.
Chimeric 14-3-3 proteins for unraveling interactions with intrinsically disordered partners
Authors: Sluchanko Nikolai N. , Tugaeva Kristina V. , Greive Sandra J. , Antson Alfred A. 
Published: September 2017

AbstractIn eukaryotes, several “hub” proteins integrate signals from different interacting partners that bind through intrinsically disordered regions. The 14-3-3 protein hub, which plays wide-ranging roles in cellular processes, has been linked to numerous human disorders and is a promising target for therapeutic intervention. Partner proteins usually bind via insertion of a phosphopeptide into an amphipathic groove of 14-3-3. Structural plasticity in the groove generates promiscuity allowing accommodation of hundreds of different partners. So far, accurate structural information has been derived for only a few 14-3-3 complexes with phosphopeptide-containing proteins and a variety of complexes with short synthetic peptides. To further advance structural studies, here we propose a novel approach based on fusing 14-3-3 proteins with the target partner peptide sequences. Such chimeric proteins are easy to design, express, purify and crystallize. Peptide attachment to the C terminus of 14-3-3 via an optimal linker allows its phosphorylation by protein kinase A during bacterial co-expression and subsequent binding at the amphipathic groove. Crystal structures of 14-3-3 chimeras with three different peptides provide detailed structural information on peptide-14-3-3 interactions. This simple but powerful approach, employing chimeric proteins, can reinvigorate studies of 14-3-3/phosphoprotein assemblies, including those with challenging low-affinity partners, and may facilitate the design of novel biosensors.
Robust magnon-photon coupling in a planar-geometry hybrid of inverted split-ring resonator and YIG film
Authors: Bhoi Biswanath , Kim Bosung , Kim Junhoe , Cho Young-Jun , Kim Sang-Koog 
Published: September 2017

AbstractWe experimentally demonstrate strongly enhanced coupling between excited magnons in an Yttrium Iron Garnet (YIG) film and microwave photons in an inverted pattern of split-ring resonator (noted as ISRR). The anti-crossing effects of the ISRR’s photon mode and the YIG’s magnon modes were found from |S21|-versus-frequency measurements for different strengths and directions of externally applied magnetic fields. The spin-number-normalized coupling strength (i.e. single spin-photon coupling) $${g}_{{\rm{eff}}}/2\pi \sqrt{N}$$

g

eff

/
2
π

N

was determined to 0.194 Hz ($${g}_{{\rm{eff}}}/2\pi $$

g

eff

/
2
π
= 90 MHz) at 3.7 GHz frequency. Furthermore, we found that additional fine features in the anti-crossing region originate from the excitation of different spin-wave modes (such as the magnetostatic surface and the backward-volume magnetostatic spin-waves) rather than the Kittel-type mode. These spin-wave modes, as coupled with the ISRR mode, modify the anti-crossing effect as well as their coupling strength. An equivalent circuit model very accurately reproduced the observed anti-crossing effect and its coupling strength variation with the magnetic field direction in the planar-geometry ISRR/YIG hybrid system. This work paves the way for the design of new types of high-gain magnon-photon coupling systems in planar geometry.
A resource of large-scale molecular markers for monitoring Agropyron cristatum chromatin introgression in wheat background based on transcriptome sequences
Authors: Zhang Jinpeng , Liu Weihua , Lu Yuqing , Liu Qunxing , Yang Xinming , Li Xiuquan , Li Lihui 
Published: September 2017

AbstractAgropyron cristatum is a wild grass of the tribe Triticeae and serves as a gene donor for wheat improvement. However, very few markers can be used to monitor A. cristatum chromatin introgressions in wheat. Here, we reported a resource of large-scale molecular markers for tracking alien introgressions in wheat based on transcriptome sequences. By aligning A. cristatum unigenes with the Chinese Spring reference genome sequences, we designed 9602 A. cristatum expressed sequence tag-sequence-tagged site (EST-STS) markers for PCR amplification and experimental screening. As a result, 6063 polymorphic EST-STS markers were specific for the A. cristatum P genome in the single-receipt wheat background. A total of 4956 randomly selected polymorphic EST-STS markers were further tested in eight wheat variety backgrounds, and 3070 markers displaying stable and polymorphic amplification were validated. These markers covered more than 98% of the A. cristatum genome, and the marker distribution density was approximately 1.28 cM. An application case of all EST-STS markers was validated on the A. cristatum 6 P chromosome. These markers were successfully applied in the tracking of alien A. cristatum chromatin. Altogether, this study provided a universal method of large-scale molecular marker development to monitor wild relative chromatin in wheat.
Ex vivo treatment of patient biopsies as a novel method to assess colorectal tumour response to the MEK1/2 inhibitor, Selumetinib
Authors: Novo Sonia M. , Wedge Stephen R. , Stark Lesley A. 
Published: September 2017

AbstractAlthough an array of new therapeutics has emerged for the treatment of colorectal cancer, their use is significantly impacted by variability in patient response. Better pre-clinical models could substantially improve efficacy as it may allow stratification of patients into the correct treatment regime. Here we explore acute,ex vivotreatment of fresh, surgically resected human colorectal tumour biopsies as a novel pre-clinical model for identifying patient response to specific therapeutics. The MEK1/2 inhibitor, Selumetinib (AZD6244, ARRY-142886) was used as a tool compound. Firstly, we established an acute treatment protocol and demonstrated this protocol could differentiate phenotypic and pharmacodynamic responses to Selumetinib (0–3uM). We then used the protocol to evaluate Selumetinib response in tumours from 23 colon cancer patients. These studies revealed that the agent inhibited pERK1/2 phosphorylation in all tumours, caused a significant decrease in proliferation in 5/23 (22%) tumours, and thatKRAS/BRAFmutant tumours were particularly sensitive to the anti-proliferative effects of the agent. These data are consistent with data from clinical trials of Selumetinib, suggesting that acute treatment of small tumour biopsies is worthy of further exploration as a pre-clinical model to evaluate colorectal cancer response to novel therapies.
Amplitude of travelling front as inferred from 14C predicts levels of genetic admixture among European early farmers
Authors: Silva Fabio , Vander Linden Marc 
Published: September 2017

AbstractLarge radiocarbon datasets have been analysed statistically to identify, on the one hand, the dynamics and tempo of dispersal processes and, on the other, demographic change. This is particularly true for the spread of farming practices in Neolithic Europe. Here we combine the two approaches and apply them to a new, extensive dataset of 14,535 radiocarbon dates for the Mesolithic and Neolithic periods across the Near East and Europe. The results indicate three distinct demographic regimes: one observed in or around the centre of farming innovation and involving a boost in carrying capacity; a second appearing in regions where Mesolithic populations were well established; and a third corresponding to large-scale migrations into previously essentially unoccupied territories, where the travelling front is readily identified. This spatio-temporal patterning linking demographic change with dispersal dynamics, as displayed in the amplitude of the travelling front, correlates and predicts levels of genetic admixture among European early farmers.
Ultrasensitive Nano-rt-iPCR for Determination of Polybrominated Diphenyl Ethers in Natural Samples
Authors: Zhang Xiaohan , Ping Xianyin , Zhuang Huisheng 
Published: September 2017

AbstractExtensive polybrominated diphenyl ethers (PBDEs) use has resulted in its increasingly widespread presence in the environment. PBDEs release from existing products can still persist and accumulate in the environment as well as in human and wildlife magnifying through the food web. Due to its ultra-trace amount in the environment, a novel ultrasensitive nano-rt-iPCR assay has been developed to determine polybrominated diphenyl ethers in natural samples. Numerous amino-DNA and polyclonal antibody (anti-PBDE) were immobilized onto the single-walled carbon nanotubes (SWCNTs) to form antibody-SWCNTs-DNA signal amplifier used in the proposed immunoassay system. Compared with rt-iPCR, this nano-rt-iPCR assay had a higher ratio of signal DNA, which meant higher signal measured and lower detection limit. This proposed nano-rt-iPCR assay was used to determine PBDEs in water samples ranging from 0.5 pg/L to 0.5ng/L; giving the LOD 1 pg/L. To the best of our knowledge, this nano-rt-iPCR is the most sensitive method for PBDEs detection. Because of that, this method needs no pre-concentration or extractions, using sample sizes as low as 10 µL. In general, this nano-rt-iPCR method will be a useful and potential way for batch detection of ultra-trace PBDEs in the aquatic environment.
Abnormal arterial-venous fusions and fate specification in mouse embryos lacking blood flow
Authors: Hwa Jennifer J. , Beckouche Nathan , Huang Lawrence , Kram Yoseph , Lindskog Henrik , Wang Rong A. 
Published: September 2017

AbstractThe functions of blood flow in the morphogenesis of mammalian arteries and veins are not well understood. We examined the development of the dorsal aorta (DA) and the cardinal vein (CV) in Ncx1−/− mutants, which lack blood flow due to a deficiency in a sodium calcium ion exchanger expressed specifically in the heart. The mutant DA and CV were abnormally connected. The endothelium of the Ncx1−/− mutant DA lacked normal expression of the arterial markers ephrin-B2 and Connexin-40. Notch1 activation, known to promote arterial specification, was decreased in mutant DA endothelial cells (ECs), which ectopically expressed the venous marker Coup-TFII. These findings suggest that flow has essential functions in the DA by promoting arterial and suppressing venous marker expression. In contrast, flow plays a lesser role in the CV, because expression of arterial-venous markers in CV ECs was not as dramatically affected in Ncx1−/− mutants. We propose a molecular mechanism by which blood flow mediates DA and CV morphogenesis, by regulating arterial-venous specification of DA ECs to ensure proper separation of the developing DA and CV.
Association between plasma gamma-glutamyltransferase fractions and metabolic syndrome among hypertensive patients
Authors: Franzini Maria , Scataglini Ilenia , Ricchiuti Angelo , Fierabracci Vanna , Paolicchi Aldo , Pompella Alfonso , Dell’Omo Giulia , Pedrinelli Roberto , Corti Alessandro 
Published: September 2017

AbstractAmong the risk factors associated to metabolic syndrome (MetS), hypertension shows the highest prevalence in Italy. We investigated the relationship between the newly identified serum γ-glutamyltransferase (GGT) fractions, b- s- m- f-GGT, and risk factors associated to MetS in hypertensive patients. A total of ninety-five consecutive hypertensive patients were enrolled. GGT fractions were analysed by gel-filtration chromatography, and hepatic steatosis was evaluated by ultrasound. MetS was diagnosed in 36% of patients. Considering the whole group, b- and f-GGT showed the highest positive correlation with BMI, glucose, triglycerides and insulin, and the highest negative correlation with HDL cholesterol. While both serum triglycerides and insulin were independently associated with b-GGT levels, only triglycerides were independently associated with f-GGT. The values of b-GGT activity increased with steatosis grade (g0 = 1.19; g2 = 3.29; ratio g2/g0 = 2.75, p < 0.0001 linear trend). Patients with MetS showed higher levels of b-GGT, m-GGT and f-GGT [median (25th–75th) U/L: 3.19 (1.50–6.59); 0.55 (0.26–0.81); 10.3 (9.1–13.6); respectively] as compared to subjects presenting with one or two MetS criteria [1.75 (0.95–2.85), p < 0.001; 0.33 (0.19–0.60), p < 0.05; 8.8 (7.0–10.6), p < 0.001]. Our data point to a potential role for b- and f-GGT fractions in identifying MetS patients among hypertensive subjects, thus providing a minimally invasive blood-based tool for MetS diagnosis.
Exercise training enhances in vivo clearance of endotoxin and attenuates inflammatory responses by potentiating Kupffer cell phagocytosis
Authors: Komine Shoichi , Akiyama Kentaro , Warabi Eiji , Oh Sechang , Kuga Keisuke , Ishige Kazunori , Togashi Shinji , Yanagawa Toru , Shoda Junichi 
Published: September 2017

AbstractThe failure of Kupffer cells (KCs) to remove endotoxin is an important factor in the pathogenesis of non-alcoholic fatty liver disease (NAFLD). In this study, the effects of exercise training on KC function were studied in terms ofin vivoendotoxin clearance and inflammatory responses. Mice were allocated into rest and exercise groups. KC bead phagocytic capacity and plasma steroid hormone levels were determined following exercise training. Endotoxin and inflammatory cytokine levels in plasma were determined over time following endotoxin injection. KC bead phagocytic capacity was potentiated and clearance of exogenously-injected endotoxin was increased in the exercise group. Inflammatory cytokine (TNF-α and IL-6) levels were lower in the exercise group. We found that only DHEA was increased in the plasma of the exercise group. In anin vitroexperiment, the addition of DHEA to RAW264.7 cells increased bead phagocytic capacity and attenuated endotoxin-induced inflammatory responses. These results suggest that exercise training modulatesin vivoendotoxin clearance and inflammatory responses in association with increased DHEA production. These exercise-induced changes in KC capacity may contribute to a slowing of disease progression in NAFLD patients.
Evaluation of circulating levels of CCN2/connective tissue growth factor in patients with ST-elevation myocardial infarction
Authors: Ritschel Vibeke , Shetelig Christian , Seljeflot Ingebjørg , Limalanathan Shanmuganathan , Hoffmann Pavel , Halvorsen Sigrun , Arnesen Harald , Eritsland Jan , Andersen Geir Øystein 
Published: September 2017

AbstractCCN2/Connective tissue growth factor seems to be involved in development of cardiac hypertrophy and fibrosis, but a possible cardioprotective role in left ventricular (LV) remodelling following myocardial infarction has also been suggested. The main objectives of the study were therefore to investigate whether circulating CCN2 levels were associated with infarct size, LV function, adverse remodelling or clinical outcome in two cohorts of patients with ST-elevation myocardial infarction (STEMI). CCN2 was measured in 988 patients 18 hours after PCI and clinical events were recorded after 55 months in the BAMI cohort. In the POSTEMI trial, serial measurements of CCN2 were performed in 258 STEMI patients during index hospitalisation and cardiac magnetic resonance imaging was performed in the acute phase and after 4 months. Clinical events were also recorded. There were no significant associations between levels of CCN2 and infarct size, LV ejection fraction, changes in LV end-diastolic or end-systolic volume, myocardial salvage or microvascular obstruction. There were no significant associations between CCN2 levels and clinical events including mortality, in either of the study cohorts. In conclusion, circulating levels of CCN2 measured in the acute phase of STEMI were not associated with final infarct size, left ventricular function or new clinical events.
The Tissue Factor Pathway and Wound Healing
Authors: Hoffman Maureane 
Published: September 2017

AbstractThe role of tissue factor (TF) as the major initiator of hemostatic blood coagulation is well recognized. The ability to form an adequate hemostatic clot is essential to the normal healing of an injury by staunching bleeding, stabilizing the injured tissue, and serving as a scaffold for repair processes. Also, some molecules produced during hemostasis, particularly thrombin, have cytokine and growth factor-like activities that contribute to inflammation and repair. However, TF itself has activities as a regulator of cellular processes via direct signaling, as well as by facilitating activation of proteolytically activated receptors by activated factors VII and X. The importance of hemostasis in the host response to injury makes it very difficult to separate the hemostatic from nonhemostatic effects of TF on wound healing. The literature in this area remains sparse but suggests that TF influences the course and tempo of healing by cell signaling events that impact inflammation, epithelialization, and angiogenesis.
Platelet RNA in Cancer Diagnostics
Authors: Tjon-Kon-Fat Lee-Ann , Sol Nik , Wurdinger Thomas , Nilsson R. 
Published: September 2017

AbstractPlatelets are involved in several steps of cancer metastasis. During this process, platelets are exposed to the tumor and its environment, thereby exchanging biomolecules with the tumor cells and resulting in tumor-mediated “education” of the platelets and a change in their RNA profile. Analysis of platelet RNA profiles or direct measurement of tumor-derived biomarkers within platelets can provide information on ongoing cancer-related processes in the individual (e.g., whether the patient has cancer, the tumor type, and possibly identify oncogenic alterations driving the disease for treatment selection). The close interaction with the disease process and the ability to respond to systemic alterations make platelets an interesting biosource for implementation in precision medicine.