bluuebunny/crossref_metadata_2025_split huggingface dataset:
Inhibition of DNA Methyltransferases Blocks Mutant Huntingtin-Induced Neurotoxicity
Authors: Pan Yanchun , Daito Takuji , Sasaki Yo , Chung Yong Hee , Xing Xiaoyun , Pondugula Santhi , Swamidass S. Joshua , Wang Ting , Kim Albert H. , Yano Hiroko 
Published: August 2016

AbstractAlthough epigenetic abnormalities have been described in Huntington’s disease (HD), the causal epigenetic mechanisms driving neurodegeneration in HD cortex and striatum remain undefined. Using an epigenetic pathway-targeted drug screen, we report that inhibitors of DNA methyltransferases (DNMTs), decitabine and FdCyd, block mutant huntingtin (Htt)-induced toxicity in primary cortical and striatal neurons. In addition, knockdown of DNMT3A or DNMT1 protected neurons against mutant Htt-induced toxicity, together demonstrating a requirement for DNMTs in mutant Htt-triggered neuronal death and suggesting a neurodegenerative mechanism based on DNA methylation-mediated transcriptional repression. Inhibition of DNMTs in HD model primary cortical or striatal neurons restored the expression of several key genes, including Bdnf, an important neurotrophic factor implicated in HD. Accordingly, the Bdnf promoter exhibited aberrant cytosine methylation in mutant Htt-expressing cortical neurons. In vivo, pharmacological inhibition of DNMTs in HD mouse brains restored the mRNA levels of key striatal genes known to be downregulated in HD. Thus, disturbances in DNA methylation play a critical role in mutant Htt-induced neuronal dysfunction and death, raising the possibility that epigenetic strategies targeting abnormal DNA methylation may have therapeutic utility in HD.
Rapid flow cytometric measurement of protein inclusions and nuclear trafficking
Authors: Whiten D. R. , San Gil R. , McAlary L. , Yerbury J. J. , Ecroyd H. , Wilson M. R. 
Published: August 2016

AbstractProteinaceous cytoplasmic inclusions are an indicator of dysfunction in normal cellular proteostasis and a hallmark of many neurodegenerative diseases. We describe a simple and rapid new flow cytometry-based method to enumerate, characterise and, if desired, physically recover protein inclusions from cells. This technique can analyse and resolve a broad variety of inclusions differing in both size and protein composition, making it applicable to essentially any model of intracellular protein aggregation. The method also allows rapid quantification of the nuclear trafficking of fluorescently labelled molecules.
Coherent control of light-matter interactions in polarization standing waves
Authors: Fang Xu , MacDonald Kevin F. , Plum Eric , Zheludev Nikolay I. 
Published: August 2016

AbstractWe experimentally demonstrate that standing waves formed by two coherent counter-propagating light waves can take a variety of forms, offering new approaches to the interrogation and control of polarization-sensitive light-matter interactions in ultrathin (subwavelength thickness) media. In contrast to familiar energy standing waves, polarization standing waves have constant electric and magnetic energy densities and a periodically varying polarization state along the wave axis. counterintuitively, anisotropic ultrathin (meta)materials can be made sensitive or insensitive to such polarization variations by adjusting their azimuthal angle.
Modulation of electrical potential and conductivity in an atomic-layer semiconductor heterojunction
Authors: Kobayashi Yu , Yoshida Shoji , Sakurada Ryuji , Takashima Kengo , Yamamoto Takahiro , Saito Tetsuki , Konabe Satoru , Taniguchi Takashi , Watanabe Kenji , Maniwa Yutaka , Takeuchi Osamu , Shigekawa Hidemi , Miyata Yasumitsu 
Published: August 2016

AbstractSemiconductor heterojunction interfaces have been an important topic, both in modern solid state physics and in electronics and optoelectronics applications. Recently, the heterojunctions of atomically-thin transition metal dichalcogenides (TMDCs) are expected to realize one-dimensional (1D) electronic systems at their heterointerfaces due to their tunable electronic properties. Herein, we report unique conductivity enhancement and electrical potential modulation of heterojunction interfaces based on TMDC bilayers consisted of MoS2 and WS2. Scanning tunneling microscopy/spectroscopy analyses showed the formation of 1D confining potential (potential barrier) in the valence (conduction) band, as well as bandgap narrowing around the heterointerface. The modulation of electronic properties were also probed as the increase of current in conducting atomic force microscopy. Notably, the observed band bending can be explained by the presence of 1D fixed charges around the heterointerface. The present findings indicate that the atomic layer heterojunctions provide a novel approach to realizing tunable 1D electrical potential for embedded quantum wires and ultrashort barriers of electrical transport.
Regulation of B cell differentiation by the ubiquitin-binding protein TAX1BP1
Authors: Matsushita Nobuko , Suzuki Midori , Ikebe Emi , Nagashima Shun , Inatome Ryoko , Asano Kenichi , Tanaka Masato , Matsushita Masayuki , Kondo Eisaku , Iha Hidekatsu , Yanagi Shigeru 
Published: August 2016

AbstractTax1-binding protein 1 (TAX1BP1) is a ubiquitin-binding protein that restricts nuclear factor-κB (NF-κB) activation and facilitates the termination of aberrant inflammation. However, its roles in B-cell activation and differentiation are poorly understood. To evaluate the function of TAX1BP1 in B cells, we established TAX1BP1-deficient DT40 B cells that are hyper-responsive to CD40-induced extracellular signal-regulated kinase (ERK) activation signaling, exhibit prolonged and exaggerated ERK phosphorylation and show enhanced B lymphocyte-induced maturation protein 1 (Blimp-1; a transcription factor inducing plasma cell differentiation) expression that is ERK-dependent. Furthermore, TAX1BP1-deficient cells exhibit significantly decreased surface IgM expression and increased IgM secretion. Moreover, TAX1BP1-deficient mice display reduced germinal center formation and antigen-specific antibody production. These findings show that TAX1BP1 restricts ERK activation and Blimp-1 expression and regulates germinal center formation.
Hybrid threshold adaptable quantum secret sharing scheme with reverse Huffman-Fibonacci-tree coding
Authors: Lai Hong , Zhang Jun , Luo Ming-Xing , Pan Lei , Pieprzyk Josef , Xiao Fuyuan , Orgun Mehmet A. 
Published: August 2016

AbstractWith prevalent attacks in communication, sharing a secret between communicating parties is an ongoing challenge. Moreover, it is important to integrate quantum solutions with classical secret sharing schemes with low computational cost for the real world use. This paper proposes a novel hybrid threshold adaptable quantum secret sharing scheme, using an m-bonacci orbital angular momentum (OAM) pump, Lagrange interpolation polynomials, and reverse Huffman-Fibonacci-tree coding. To be exact, we employ entangled states prepared by m-bonacci sequences to detect eavesdropping. Meanwhile, we encode m-bonacci sequences in Lagrange interpolation polynomials to generate the shares of a secret with reverse Huffman-Fibonacci-tree coding. The advantages of the proposed scheme is that it can detect eavesdropping without joint quantum operations, and permits secret sharing for an arbitrary but no less than threshold-value number of classical participants with much lower bandwidth. Also, in comparison with existing quantum secret sharing schemes, it still works when there are dynamic changes, such as the unavailability of some quantum channel, the arrival of new participants and the departure of participants. Finally, we provide security analysis of the new hybrid quantum secret sharing scheme and discuss its useful features for modern applications.
PoplarGene: poplar gene network and resource for mining functional information for genes from woody plants
Authors: Liu Qi , Ding Changjun , Chu Yanguang , Chen Jiafei , Zhang Weixi , Zhang Bingyu , Huang Qinjun , Su Xiaohua 
Published: August 2016

AbstractPoplar is not only an important resource for the production of paper, timber and other wood-based products, but it has also emerged as an ideal model system for studying woody plants. To better understand the biological processes underlying various traits in poplar, e.g., wood development, a comprehensive functional gene interaction network is highly needed. Here, we constructed a genome-wide functional gene network for poplar (covering ~70% of the 41,335 poplar genes) and created the network web service PoplarGene, offering comprehensive functional interactions and extensive poplar gene functional annotations. PoplarGene incorporates two network-based gene prioritization algorithms, neighborhood-based prioritization and context-based prioritization, which can be used to perform gene prioritization in a complementary manner. Furthermore, the co-functional information in PoplarGene can be applied to other woody plant proteomes with high efficiency via orthology transfer. In addition to poplar gene sequences, the webserver also accepts Arabidopsis reference gene as input to guide the search for novel candidate functional genes in PoplarGene. We believe that PoplarGene (http://bioinformatics.caf.ac.cn/PoplarGene and http://124.127.201.25/PoplarGene) will greatly benefit the research community, facilitating studies of poplar and other woody plants.
The opposite prognostic effect of NDUFS1 and NDUFS8 in lung cancer reflects the oncojanus role of mitochondrial complex I
Authors: Su Chia-Yi , Chang Yu-Chan , Yang Chih-Jen , Huang Ming-Shyan , Hsiao Michael 
Published: August 2016

AbstractA recent surge of research on complex I mitochondrial DNA indicates that complex I disassembly regulated by mutation threshold plays a critical role in tumor progression. However, nuclear DNA (nDNA)-encoded core subunits are still a neglected area for cancer investigation. In this study, respective prognostic contributions of 7 nDNA-encoded core subunits were analyzed by immunohistochemical staining and RNA expression data extracted from public resources. The results showed that NDUFS1 and NDUFS8 had the most significant prognostic power in NSCLC patients among all 7 nDNA-encoded core subunits. Patients with low NDUFS1 or high NDUFS8 IHC and RNA expression levels had poor overall survival. Because of the significant correlation between expressions of 7 nDNA-encoded core subunits, multivariate analysis was performed and identified NDUFS1 and NDUFS8 IHC and RNA expression levels retained their leading prognostic roles. By combining NDFUS1 and NDUFS8 as a panel, the most unfavorable prognostic group had a 14-fold increased risk of poor prognosis than the most favorable prognostic group. In conclusion, the opposite prognostic effect of nDNA-encoded core subunits suggests the oncojanus role of nuclear genes regulating complex I dysfunction. The panel with NDUFS1 and NDUFS8 reflecting tumor metabolism status is a novel prognostic predictor for lung cancer.
Dissociable effects of the prodrug phendimetrazine and its metabolite phenmetrazine at dopamine transporters
Authors: Solis Ernesto , Suyama Julie A. , Lazenka Matthew F. , DeFelice Louis J. , Negus S. Stevens , Blough Bruce E. , Banks Matthew L. 
Published: August 2016

AbstractPhendimetrazine (PDM) is a clinically available anorectic and a candidate pharmacotherapy for cocaine addiction. PDM has been hypothesized to function as a prodrug that requires metabolism to the amphetamine-like monoamine transporter substrate phenmetrazine (PM) to produce its pharmacological effects; however, whether PDM functions as an inactive prodrug or has pharmacological activity on its own remains unclear. The study aim was to determine PDM pharmacological mechanisms using electrophysiological, neurochemical, and behavioral procedures. PDM blocked the endogenous basal hDAT (human dopamine transporter) current in voltage-clamped (−60 mV) oocytes consistent with a DAT inhibitor profile, whereas its metabolite PM induced an inward hDAT current consistent with a DAT substrate profile. PDM also attenuated the PM-induced inward current during co-application, providing further evidence that PDM functions as a DAT inhibitor. PDM increased nucleus accumbens dopamine levels and facilitated electrical brain stimulation reinforcement within 10 min in rats, providing in vivo evidence supporting PDM pharmacological activity. These results demonstrate that PDM functions as a DAT inhibitor that may also interact with the pharmacological effects of its metabolite PM. Overall, these results suggest a novel mechanism for PDM therapeutic effects via initial PDM DAT inhibition followed by PM DAT substrate-induced dopamine release.
A Dominant Social Comparison Heuristic Unites Alternative Mechanisms for the Evolution of Indirect Reciprocity
Authors: Whitaker Roger M. , Colombo Gualtiero B. , Allen Stuart M. , Dunbar Robin I. M. 
Published: August 2016

AbstractCooperation is a fundamental human trait but our understanding of how it functions remains incomplete. Indirect reciprocity is a particular case in point, where one-shot donations are made to unrelated beneficiaries without any guarantee of payback. Existing insights are largely from two independent perspectives: i) individual-level cognitive behaviour in decision making, and ii) identification of conditions that favour evolution of cooperation. We identify a fundamental connection between these two areas by examining social comparison as a means through which indirect reciprocity can evolve. Social comparison is well established as an inherent human disposition through which humans navigate the social world by self-referential evaluation of others. Donating to those that are at least as reputable as oneself emerges as a dominant heuristic, which represents aspirational homophily. This heuristic is found to be implicitly present in the current knowledge of conditions that favour indirect reciprocity. The effective social norms for updating reputation are also observed to support this heuristic. We hypothesise that the cognitive challenge associated with social comparison has contributed to cerebral expansion and the disproportionate human brain size, consistent with the social complexity hypothesis. The findings have relevance for the evolution of autonomous systems that are characterised by one-shot interactions.
Hierarchical core-shell NiCo2O4@NiMoO4 nanowires grown on carbon cloth as integrated electrode for high-performance supercapacitors
Authors: Huang Liang , Zhang Wei , Xiang Jinwei , Xu Henghui , Li Guolong , Huang Yunhui 
Published: August 2016

AbstractHierarchical core-shell NiCo2O4@NiMoO4 nanowires were grown on carbon cloth (CC@NiCo2O4@NiMoO4) by a two-step hydrothermal route to fabricate a flexible binder-free electrode. The prepared CC@NiCo2O4@NiMoO4 integrated electrode was directly used as an electrode for faradaic supercapacitor. It shows a high areal capacitance of 2.917 F cm−2 at 2 mA cm−2 and excellent cycling stability with 90.6% retention over 2000 cycles at a high current density of 20 mA cm−2. The superior specific capacitance, rate and cycling performance can be ascribed to the fast transferring path for electrons and ions, synergic effect and the stability of the hierarchical core-shell structure.
Histological response of soda-lime glass-ceramic bactericidal rods implanted in the jaws of beagle dogs
Authors: Moya José S. , Martínez Arturo , López-Píriz Roberto , Guitián Francisco , Díaz Luis A. , Esteban-Tejeda Leticia , Cabal Belén , Sket Federico , Fernández-García Elisa , Tomsia Antoni P. , Torrecillas Ramón 
Published: August 2016

AbstractBacterial and fungal infections remain a major clinical challenge. Implant infections very often require complicated revision procedures that are troublesome to patients and costly to the healthcare system. Innovative approaches to tackle infections are urgently needed. We investigated the histological response of novel free P2O5 glass-ceramic rods implanted in the jaws of beagle dogs. Due to the particular percolated morphology of this glass-ceramic, the dissolution of the rods in the animal body environment and the immature bone formation during the fourth months of implantation maintained the integrity of the glass-ceramic rod. No clinical signs of inflammation took place in any of the beagle dogs during the four months of implantation. This new glass-ceramic biomaterial with inherent bactericidal and fungicidal properties can be considered as an appealing candidate for bone tissue engineering.
Growth of Epitaxial Oxide Thin Films on Graphene
Authors: Zou Bin , Walker Clementine , Wang Kai , Tileli Vasiliki , Shaforost Olena , Harrison Nicholas M. , Klein Norbert , Alford Neil M. , Petrov Peter K. 
Published: August 2016

AbstractThe transfer process of graphene onto the surface of oxide substrates is well known. However, for many devices, we require high quality oxide thin films on the surface of graphene. This step is not understood. It is not clear why the oxide should adopt the epitaxy of the underlying oxide layer when it is deposited on graphene where there is no lattice match. To date there has been no explanation or suggestion of mechanisms which clarify this step. Here we show a mechanism, supported by first principles simulation and structural characterisation results, for the growth of oxide thin films on graphene. We describe the growth of epitaxial SrTiO3 (STO) thin films on a graphene and show that local defects in the graphene layer (e.g. grain boundaries) act as bridge-pillar spots that enable the epitaxial growth of STO thin films on the surface of the graphene layer. This study and in particular the suggestion of a mechanism for epitaxial growth of oxides on graphene, offers new directions to exploit the development of oxide/graphene multilayer structures and devices.
Microstructure evolution with varied layer thickness in magnetron-sputtered Ni/C multilayer films
Authors: Peng Jichang , Li Wenbin , Huang Qiushi , Wang Zhanshan 
Published: August 2016

AbstractThe microstructure evolution of magnetron-sputtered Ni/C multilayers was investigated by varying the Ni and C layer thickness in the region of a few nanometers. For the samples having 2.6-nm-thick C layers, the interface width increases from 0.37 to 0.81 nm as the Ni layer thickness decreases from 4.3 to 1.3 nm. Especially for the samples with Ni layers less than 2.0 nm, the interface width changes significantly due to the discontinuously distributed Ni crystallites. For the samples having 2.8-nm-thick Ni layers, the interface width increases from 0.37 to 0.59 nm when the C layer thickness decreases from 4.3 to 0.7 nm. The evolution of interface microstructures with varied Ni and C layers is explained based on a proposed simple growth model of Ni and C layers.
Enhanced tumor targeting of cRGD peptide-conjugated albumin nanoparticles in the BxPC-3 cell line
Authors: Yu Xinzhe , Song Yunlong , Di Yang , He Hang , Fu Deliang , Jin Chen 
Published: August 2016

AbstractThe emerging albumin nanoparticle brings new hope for the delivery of antitumor drugs. However, a lack of robust tumor targeting greatly limits its application. In this paper, cyclic arginine-glycine-aspartic-conjugated, gemcitabine-loaded human serum albumin nanoparticles (cRGD-Gem-HSA-NPs) were successfully prepared, characterized, and tested in vitro in the BxPC-3 cell line. Initially, 4-N-myristoyl-gemcitabine (Gem-C14) was formed by conjugating myristoyl to the 4-amino group of gemcitabine. Then, cRGD-HSA was synthesized using sulfosuccinimidyl-(4-N-maleimidomethyl)cyclohexane-1-carboxylate (Sulfo-SMCC) cross-linkers. Finally, cRGD-Gem-HSA-NPs were formulated based on the nanoparticle albumin-bound (nab) technology. The resulting NPs were characterized for particle size, zeta potential, morphology, encapsulation efficiency, and drug loading efficiency. In vitro cellular uptake and inhibition studies were conducted to compare Gem-HSA-NPs and cRGD-Gem-HSA-NPs in a human pancreatic cancer cell line (BxPC-3). The cRGD-Gem-HSA-NPs exhibited an average particle size of 160 ± 23 nm. The encapsulation rate and drug loading rate were approximately 83 ± 5.6% and 11 ± 4.2%, respectively. In vitro, the cRGD-anchored NPs exhibited a significantly greater affinity for the BxPC-3 cells compared to non-targeted NPs and free drug. The cRGD-Gem-HSA-NPs also showed the strongest inhibitory effect in the BxPC-3 cells among all the analyzed groups. The improved efficacy of cRGD-Gem-HSA-NPs in the BxPC-3 cell line warrants further in vivo investigations.
The nephronophthisis-related gene ift-139 is required for ciliogenesis in Caenorhabditis elegans
Authors: Niwa Shinsuke 
Published: August 2016

AbstractDefects in cilia cause a spectrum of diseases known as ciliopathies. Nephronophthisis, a ciliopathy, is the most common genetic cause of renal disease. Here, I cloned and analysed a nephronophthisis-related gene ift-139 in Caenorhabditis elegans. ift-139 was exclusively expressed in ciliated neurons in C. elegans. Genetic and cellular analyses suggest that ift-139 plays a role in retrograde intraflagellar transport and is required for cilia formation. A homologous point mutation that causes ciliopathy disrupted the function of ift-139 in C. elegans. ift-139 is an orthologue of human TTC21B, mutations in which are known to cause nephronophthisis 12 and short-rib thoracic dysplasia 4. These results suggest that ift-139 is evolutionarily conserved and fundamental to the formation of cilia.
De Hass-van Alphen and magnetoresistance reveal predominantly single-band transport behavior in PdTe2
Authors: Wang Yongjian , Zhang Jinglei , Zhu Wenka , Zou Youming , Xi Chuanying , Ma Long , Han Tao , Yang Jun , Wang Jingrong , Xu Junmin , Zhang Lei , Pi Li , Zhang Changjin , Zhang Yuheng 
Published: August 2016

AbstractResearch on two-dimensional transition metal dichalcogenides (TMDs) has grown rapidly over the past several years, from fundamental studies to the development of next generation technologies. Recently, it has been reported that the MX2-type PdTe2 exhibits superconductivity with topological surface state, making this compound a promising candidate for investigating possible topological superconductivity. However, due to the multi-band feature of most of TMDs, the investigating of magnetoresistance and quantum oscillations of these TMDs proves to be quite complicated. Here we report a combined de Hass-van Alphen effect and magnetoresistance studies on the PdTe2 single crystal. Our high-field de Hass-van Alphen data measured at different temperature and different tilting angle suggest that though these is a well-defined multi-band feature, a predominant oscillation frequency has the largest oscillation magnitude in the fast Fourier transformation spectra, which is at least one order of magnitude larger than other oscillation frequencies. Thus it is likely that the transport behavior in PdTe2 system can be simplified into a single-band model. Meanwhile, the magnetoresistance results of the PdTe2 sample can be well-fitted according to the single-band models. The present results could be important in further investigation of the transport behaviors of two-dimensional TMDs.