bluuebunny/crossref_metadata_2025_split huggingface dataset:
Limitation in the use of spectral analysis to detect Weligama coconut leaf wilt disease affected palms in Southern Sri Lanka
Authors: Nainanayake A. D. , Gunathilake J. , Kumarathunga M. D. P. , Gunawardena P. M. , Wijesekara H. T. R. 
Published: November 2016

Weligama Coconut Leaf Wilt Disease (WCLWD) was first reported in late 2006 in the Weligama Divisional Secretariat Division (DSD) in Matara District in the Southern Province of Sri Lanka. Surveys conducted in 2012 revealed that 65,838, 251,980 and 14,344 palms affected by the disease in Galle, Malara and Hambanlota districts respectively. It has been confirmed by the Coconut Research Institute that the disease is caused by a phytoplasma which has some resemblance to the phytoplasma of Coconut Root (Wilt) disease in India. A 3 km wide boundary was demarcated covering the area affected by the disease and all suspicious palms were removed in the boundary zone. In the core area, affected palms were gradual removed. The disease prevailing area spanned > 680 km2 and the detection of affected coconut palms across such a large area became practically difficult. Therefore, the objective of the present study was to find alternative methods to detect affected coconut palms with yellowing leaves prominent at the middle stage of the disease, using multispectral satellite images of 0.5 m resolution. It was envisaged to use this technique as a supportive management tool at field level, if successful. Normalized Differential Vegetation Index (NDVI) which is the standard and widely used algorithm for detecting vegetation under stress conditions did not reveal an appreciable isolation of canopies of affected coconut palms. Of the different customized algorithms tested, the best outcome was obtained by the algorithm (Red + Green) - 2 x (Blue). When this algorithm was applied to the multispectral satellite images of 0.5 m resolution in the affected area, adult coconut palms in advanced stage of the disease could be distinguished with an accuracy of above 80%. However, a detection of palms in the early stages of the disease where leaf flaccidity is the major morphological symptom could not be made with an acceptable level of accuracy. Moreover, the detection of affected coconut seedlings was much more difficult. Thus, only an overall accuracy of 60 - 70% could be achieved by this approach with multispectral satellite images of 0.5 m resolution. Although the level of accuracy is not sufficient for a comprehensive field level application, there is scope for further improvement using images with higher resolution.
IL-27 Is Essential for Suppression of Experimental Allergic Asthma by the TLR7/8 Agonist R848 (Resiquimod)
Authors: Jirmo Adan Chari , Daluege Kathleen , Happle Christine , Albrecht Melanie , Dittrich Anna-Maria , Busse Mandy , Habener Anika , Skuljec Jelena , Hansen Gesine 
Published: November 2016

Abstract
Different models of experimental allergic asthma have shown that the TLR7/8 agonist resiquimod (R848) is a potential inhibitor of type 2 helper cell–driven inflammatory responses. However, the mechanisms mediating its therapeutic effects are not fully understood. Using a model of experimental allergic asthma, we show that induction of IL-27 by R848 is critical for the observed ameliorative effects. R848 significantly inhibited all hallmarks of experimental allergic asthma, including airway hyperreactivity, eosinophilic airway inflammation, mucus hypersecretion, and Ag-specific Ig production. Whereas R848 significantly reduced IL-5, IL-13, and IL-17, it induced IFN-γ and IL-27. Neutralization of IL-27 completely reversed the therapeutic effect of R848 in the experimental asthma model, demonstrating dependence of R848-mediated suppression on IL-27. In vitro, R848 induced production of IL-27 by murine alveolar macrophages and dendritic cells and enhanced expression of programmed death–ligand 1, whose expression on monocytes and dendritic cells has been shown to regulate peripheral tolerance in both murine and human studies. Moreover, in vitro IL-27 enhanced secretion of IFN-γ whereas it inhibited IL-5 and IL-13, demonstrating its direct effect on attenuating Th2 responses. Taken together, our study proves that R848-mediated suppression of experimental asthma is dependent on IL-27. These data provide evidence of a central role of IL-27 for the control of Th2-mediated allergic diseases.
Microleakage of Glass Ionomer-based Provisional Cement in CAD/CAM-Fabricated Interim Crowns: An in vitro Study
Authors: Farah Ra'fat I , Al-Harethi Naji 
Published: November 2016

ABSTRACT

Aim
The aim of this study was to compare in vitro the marginal microleakage of glass ionomer-based provisional cement with resin-based provisional cement and zinc oxide non-eugenol (ZONE) provisional cement in computer-aided design and computer-aided manufacturing (CAD/CAM)-fabricated interim restorations.

Materials and methods
Fifteen intact human premolars were prepared in a standardized manner for complete coverage of crown restorations. Interim crowns for the prepared teeth were then fabricated using CAD/CAM, and the specimens were randomized into three groups of provisional cementing agents (n = 5 each): Glass ionomer-based provisional cement (GC Fuji TEMP LT™), bisphenol-A-glycidyldimethacrylate (Bis-GMA)/triethylene glycol dimethacrylate (TEGDMA) resin-based cement (UltraTemp® REZ), and ZONE cement (TempBond NE). After 24 hours of storage in distilled water at 37°C, the specimens were thermocycled and then stored again for 24 hours in distilled water at room temperature. Next, the specimens were placed in freshly prepared 2% aqueous methylene blue dye for 24 hours and then embedded in autopolymerizing acrylic resin blocks and sectioned in buccolingual and mesiodistal directions to assess dye penetration using a stereomicroscope. The results were statistically analyzed using a nonparametric Kruskal–Wallis test. Dunn's post hoc test with a Bonferroni correction test was used to compute multiple pairwise comparisons that identified differences among groups; the level of significance was set at p < 0.05.

Results
All groups exhibited marginal microleakage; the Bis-GMA/TEGDMA resin-based provisional cement demonstrated the lowest microleakage scores, which were statistically different from those of the glass ionomer-based provisional cement and the ZONE cement.

Conclusion
The provisional cementing agents exhibited different sealing abilities. The Bis-GMA/TEGDMA resin-based provisional cement exhibited the most effective favorable sealing properties against dye penetration compared with the glass ionomer-based provisional cement and conventional ZONE cement.

Clinical significance
Newly introduced glass ionomer-based provisional cement proved to be inferior to resin-based provisional cement as far as marginal microleakage is concerned.

How to cite this article
Farah RI, Al-Harethi N. Microleakage of Glass Ionomer-based Provisional Cement in CAD/CAM-Fabricated Interim Crowns: An in vitro Study. J Contemp Dent Pract 2016;17(10):801-806.
Assessment of Interexaminer Agreement in the Detection of Condyle Morphology and positioning with Two Methods: Radiographic and Tomographic
Authors: Conti Ana CCF , Giunco JS de Almeida , Oltramari-Navarro PV Pedron , Fernandes TM Freire , Navarro R de Lima , de Almeida MR 
Published: November 2016

ABSTRACT

Aim
This study aims at evaluating the interexaminer agreement between radiographic and tomographic methods to determine condyle morphological variations and positioning.

Materials and methods
The sample comprised 100 individuals aged 13 to 30 years, from the patient files of University of North Paraná. The assessment of condyles morphology and positioning was performed in images of digital panoramic radiography (DPR) and reconstructed panoramic images from the cone beam computed tomography (CBCT) scans, by using the Dolphin three-dimensional (3D) program. The condyle morphology was categorized as flat, convex, and angular as well as its positioning classified into anterior, posterior, and concentric. Three calibrated examiners performed this subjective evaluation. After that, another examiner performed an objective assessment of the condyles positioning using tomographic sagittal scans of the condyles, applying the same 3D program. This objective evaluation of the condyle position, considered the gold standard (GS), was achieved by using a formula based on the measurement values of the joint spaces, anterior and posterior. The kappa test was used to assess the interexaminer agreement in determining the condyles morphology and positioning, as well as between the condyle positioning results determined by the examiners and the GS.

Results
The results showed poor agreement among examiners and between the subjective and objective condyle positioning evaluation.

Conclusion
It was concluded that the panoramic radiography (PR), either digitalized or reconstructed from CBCT scans, is not suitable for determining variations in condyle morphology and position.

Clinical significance
Whenever it is necessary to evaluate the mandibular condyle during the orthodontic screening, the orthodontist should consider another image modality better than the PR.

How to cite this article
de Almeida Giunco JS, Oltramari-Navarro PVP, Freire Fernandes TMF, de Lima Navarro R, de Almeida MR, de Castro Ferreira Conti AC. Assessment of Interexaminer Agreement in the Detection of Condyle Morphology and positioning with Two Methods: Radiographic and Tomographic. J Contemp Dent Pract 2016;17(10):837-843.
Assessment of the Incidence of Posttreatment Endodontic Flare-ups in Patients undergoing Single-sitting Root Canal Therapies: A Clinical Study
Authors: Priyank Harsh , Devi TM Chaitra , Goel Pallavi , Sahu Nivedita , Nihalani Shweta , Shandilya Ashutosh 
Published: November 2016

ABSTRACT

Introduction
Endodontic therapy is one of the commonly used procedures for treating the teeth affected by various pathologies. One of the major problems for endodontists despite the advancements in the root canal procedures is the posttreatment endodontic flare-ups. Much debate exists regarding the completion of endodontic therapy in a single sitting or multiple sittings. Hence, we assessed the incidence of endodontic flare-ups in patients undergoing single-sitting root canal therapies.

Materials and methods
The present study included 200 patients who underwent single-sitting endodontic therapy. Clinical details and conditions of each and every tooth of every patient were recorded before and after the completion of endodontic therapy. Irrigation during the root canal procedures was done by 2.5% NaOCl solution in most of the cases while others were irrigated with various combinations of ethylenediaminetetraacetic acid (EDTA) and cycloheximide (CHX) solutions. Follow-up records and readings of the patents were noted and were subjected to statistical analysis.

Results
Four groups were formed which divided the patients equally on the basis of their age. Out of 50 patients in the age group of 21 to 30 years, only 4 showed posttreatment endodontic flare-ups, while no endodontic flare-up was recorded in patients with age group of 31 to 50 years. Only two male and four females showed flare-ups postoperatively. A nonsignificant correlation was obtained when flare-up cases were compared on the basis of type of irrigation solution used during canal preparation.

Conclusion
Single-sitting endodontic therapy appears to be a successful procedure with good prognosis and minimal posttreatment flare-up results, even in patients with periapical pathologies.

Clinical significance
Single-sitting root canal procedures can be successfully carried in patients with vital or nonvital pulp tissues and also in patients with periapical lesions.

How to cite this article
Priyank H, Chaitra Devi TM, Goel P, Sahu N, Nihalani S, Shandilya A. Assessment of the Incidence of Posttreatment Endodontic Flare-ups in Patients undergoing Single-sitting Root Canal Therapies: A Clinical Study. J Contemp Dent Pract 2016;17(10):849-852.
Expression of Myofibroblasts in Oral Squamous Cell Carcinoma: An Immunohistochemical Study
Authors: Khan Javed , Prasad B Vikas , Kakatkar Gauri S , Jain Preet , Jain Meetu , Patel Maulik 
Published: November 2016

ABSTRACT

Introduction
Oral squamous cell carcinoma (OSCC) is one of the most common types of malignancy affecting the orafacial region and with a high mortality rate. The fact that stroma of the tumor modulates and facilitates the progression and metastasis of the malignancy has been shown in the past studies. The cells of the activated stroma that are responsible for the progression and metastasis of the tumor are the fibroblasts having smooth muscle properties. These myofibroblasts are said to secrete numerous inflammatory mediators and factors which are said to play a crucial role in tumor progression. Therefore, we evaluated the presence of myofibroblasts in OSCC, by immunohistochemistry using alpha smooth muscle actin (α-SMA) antibody.

Materials and methods
We evaluated a total of 50 biopsy specimens from the archives of the oral pathology, where 20 specimens out of 50 were of well-differentiated OSCC (WDOSCC), 20 were of poorly differentiated OSCC (PDOSCC), and 10 were of normal healthy controls. All the specimens were stained by immunohistochemically using with monoclonal antihuman α-SMA. Etemad-Moghadam et al method was used for assessing the myofibroblast distribution. Staining index was evaluated for the groups and compared. All the results were analyzed by Statistical Package for the Social Sciences (SPSS) software.

Results
The mean percentage of myofibroblasts score for WDOSCC and PDOSCC were 2.88 and 2.92 respectively. The mean staining intensity score in WDOSCC and PDOSCC were 2.88 and 2.55 respectively. Statistically significant results were obtained while comparing the final staining index score between the OSCC group and normal control group. No significant correlation could be obtained while comparing the mean staining index score in between WDOSCC and PDOSCC.

Conclusion
Malignant epithelium might induce the adjacent stromal tissue to produce myofibroblasts. These specialized cells may be utilized as therapeutic targets for the treatment of OSCC.

Clinical significance
Proliferation of myofibroblasts may be used as a stromal marker of premalignancy and malignancy.

How to cite this article
Prasad BV, Kakatkar GS, Jain P, Jain M, Patel M, Khan J. Expression of Myofibroblasts in Oral Squamous Cell Carcinoma: An Immunohistochemical Study. J Contemp Dent Pract 2016;17(10):857-860.
Continuous and high-precision atmospheric concentration measurements
of COS, CO2, CO and H2O using a quantum cascade laser spectrometer (QCLS)
Authors: Kooijmans Linda M. J. , Uitslag Nelly A. M. , Zahniser Mark S. , Nelson David D. , Montzka Stephen A. , Chen Huilin 
Published: November 2016

Abstract. Carbonyl sulfide (COS) has been suggested as a useful tracer for gross primary production as it is taken up by plants in a similar way as CO2. To explore and verify the application of this novel tracer, it is highly desired to develop the ability to perform continuous and high-precision in situ atmospheric measurements of COS and CO2. In this study we have tested a quantum cascade laser spectrometer (QCLS) for its suitability to obtain accurate and high-precision measurements of COS and CO2. The instrument is capable of simultaneously measuring COS, CO2, CO and H2O after including a weak CO absorption line in the extended wavelength range. An optimal background and calibration strategy was developed based on laboratory tests to ensure accurate field measurements. We have derived water vapor correction factors based on a set of laboratory experiments and found that for COS the interference associated with a water absorption line can dominate over the effect of dilution. This interference can be solved mathematically by fitting the COS spectral line separately from the H2O spectral line. Furthermore, we improved the temperature stability of the QCLS by isolating it in an enclosed box and actively cooling its electronics with the same thermoelectric chiller used to cool the laser. The QCLS was deployed at the Lutjewad atmospheric monitoring station (60 m; 6°21′ E, 53°24′ N; 1 m a.s.l.) in the Netherlands from July 2014 to April 2015. The QCLS measurements of independent working standards while deployed in the field showed a mean difference with the assigned cylinder value within 3.3 ppt COS, 0.05 ppm for CO2 and 1.7 ppb for CO over a period of 35 days. The different contributions to uncertainty in measurements of COS, CO2 and CO were summarized and the overall uncertainty was determined to be 7.5 ppt for COS, 0.23 ppm for CO2 and 3.3 ppb for CO for 1-minute data. A comparison of in situ QCLS measurements with those from concurrently filled flasks that were subsequently measured by the QCLS showed a difference of −9.7 ± 4.6 ppt for COS. Comparison of the QCLS with a cavity ring-down spectrometer showed a difference of 0.12 ± 0.77 ppm for CO2 and −0.9 ± 3.8 ppb for CO.
Size-resolved simulations of the aerosol inorganic composition with the new
hybrid dissolution solver HyDiS-1.0: description, evaluation and first
global modelling results
Authors: Benduhn François , Mann Graham W. , Pringle Kirsty J. , Topping David O. , McFiggans Gordon , Carslaw Kenneth S. 
Published: November 2016

Abstract. The dissolution of semi-volatile inorganic gases such as ammonia and nitric acid into the aerosol aqueous phase has an important influence on the composition, hygroscopic properties, and size distribution of atmospheric aerosol particles. The representation of dissolution in global models is challenging due to inherent issues of numerical stability and computational expense. For this reason, simplified approaches are often taken, with many models treating dissolution as an equilibrium process. In this paper we describe the new dissolution solver HyDiS-1.0, which was developed for the global size-resolved simulation of aerosol inorganic composition. The solver applies a hybrid approach, which allows for some particle size classes to establish instantaneous gas-particle equilibrium, whereas others are treated time dependently (or dynamically). Numerical accuracy at a competitive computational expense is achieved by using several tailored numerical formalisms and decision criteria, such as for the time- and size-dependent choice between the equilibrium and dynamic approaches. The new hybrid solver is shown to have numerical stability across a wide range of numerical stiffness conditions encountered within the atmosphere. For ammonia and nitric acid, HyDiS-1.0 is found to be in excellent agreement with a fully dynamic benchmark solver. In the presence of sea salt aerosol, a somewhat larger bias is found under highly polluted conditions if hydrochloric acid is represented as a third semi-volatile species. We present first results of the solver's implementation into a global aerosol microphysics and chemistry transport model. We find that (1) the new solver predicts surface concentrations of nitrate and ammonium in reasonable agreement with observations over Europe, the USA, and East Asia, (2) models that assume gas-particle equilibrium will not capture the partitioning of nitric acid and ammonia into Aitken-mode-sized particles, and thus may be missing an important pathway through which secondary particles may grow to radiation- and cloud-interacting size, and (3) the new hybrid solver's computational expense is modest, at around 10 % of total computation time in these simulations.
An approach to computing discrete adjoints for MPI-parallelized models applied to Ice Sheet System Model 4.11
Authors: Larour Eric , Utke Jean , Bovin Anton , Morlighem Mathieu , Perez Gilberto 
Published: November 2016

Abstract. Within the framework of sea-level rise projections, there is a strong need for hindcast validation of the evolution of polar ice sheets in a way that tightly matches observational records (from radar, gravity, and altimetry observations mainly). However, the computational requirements for making hindcast reconstructions possible are severe and rely mainly on the evaluation of the adjoint state of transient ice-flow models. Here, we look at the computation of adjoints in the context of the NASA/JPL/UCI Ice Sheet System Model (ISSM), written in C++ and designed for parallel execution with MPI. We present the adaptations required in the way the software is designed and written, but also generic adaptations in the tools facilitating the adjoint computations. We concentrate on the use of operator overloading coupled with the AdjoinableMPI library to achieve the adjoint computation of the ISSM. We present a comprehensive approach to (1) carry out type changing through the ISSM, hence facilitating operator overloading, (2) bind to external solvers such as MUMPS and GSL-LU, and (3) handle MPI-based parallelism to scale the capability. We demonstrate the success of the approach by computing sensitivities of hindcast metrics such as the misfit to observed records of surface altimetry on the northeastern Greenland Ice Stream, or the misfit to observed records of surface velocities on Upernavik Glacier, central West Greenland. We also provide metrics for the scalability of the approach, and the expected performance. This approach has the potential to enable a new generation of hindcast-validated projections that make full use of the wealth of datasets currently being collected, or already collected, in Greenland and Antarctica.
Soil fauna: key to new carbon models
Authors: Filser Juliane , Faber Jack H. , Tiunov Alexei V. , Brussaard Lijbert , Frouz Jan , De Deyn Gerlinde , Uvarov Alexei V. , Berg Matty P. , Lavelle Patrick , Loreau Michel , Wall Diana H. , Querner Pascal , Eijsackers Herman , Jiménez Juan José 
Published: November 2016

Abstract. Soil organic matter (SOM) is key to maintaining soil fertility, mitigating climate change, combatting land degradation, and conserving above- and below-ground biodiversity and associated soil processes and ecosystem services. In order to derive management options for maintaining these essential services provided by soils, policy makers depend on robust, predictive models identifying key drivers of SOM dynamics. Existing SOM models and suggested guidelines for future SOM modelling are defined mostly in terms of plant residue quality and input and microbial decomposition, overlooking the significant regulation provided by soil fauna. The fauna controls almost any aspect of organic matter turnover, foremost by regulating the activity and functional composition of soil microorganisms and their physical–chemical connectivity with soil organic matter. We demonstrate a very strong impact of soil animals on carbon turnover, increasing or decreasing it by several dozen percent, sometimes even turning C sinks into C sources or vice versa. This is demonstrated not only for earthworms and other larger invertebrates but also for smaller fauna such as Collembola. We suggest that inclusion of soil animal activities (plant residue consumption and bioturbation altering the formation, depth, hydraulic properties and physical heterogeneity of soils) can fundamentally affect the predictive outcome of SOM models. Understanding direct and indirect impacts of soil fauna on nutrient availability, carbon sequestration, greenhouse gas emissions and plant growth is key to the understanding of SOM dynamics in the context of global carbon cycling models. We argue that explicit consideration of soil fauna is essential to make realistic modelling predictions on SOM dynamics and to detect expected non-linear responses of SOM dynamics to global change. We present a decision framework, to be further developed through the activities of KEYSOM, a European COST Action, for when mechanistic SOM models include soil fauna. The research activities of KEYSOM, such as field experiments and literature reviews, together with dialogue between empiricists and modellers, will inform how this is to be done.