bluuebunny/crossref_metadata_2025_split huggingface dataset:
Visualization of lithium-ion transport and phase evolution within and between manganese oxide nanorods
Authors: Xu Feng , Wu Lijun , Meng Qingping , Kaltak Merzuk , Huang Jianping , Durham Jessica L. , Fernandez-Serra Marivi , Sun Litao , Marschilok Amy C. , Takeuchi Esther S. , Takeuchi Kenneth J. , Hybertsen Mark S. , Zhu Yimei 
Published: May 2017

AbstractMultiple lithium-ion transport pathways and local phase changes upon lithiation in silver hollandite are revealed via in situ microscopy including electron diffraction, imaging and spectroscopy, coupled with density functional theory and phase field calculations. We report unexpected inter-nanorod lithium-ion transport, where the reaction fronts and kinetics are maintained within the neighbouring nanorod. Notably, this is the first time-resolved visualization of lithium-ion transport within and between individual nanorods, where the impact of oxygen deficiencies is delineated. Initially, fast lithium-ion transport is observed along the long axis with small net volume change, resulting in two lithiated silver hollandite phases distinguishable by orthorhombic distortion. Subsequently, a slower reaction front is observed, with formation of polyphase lithiated silver hollandite and face-centred-cubic silver metal with substantial volume expansion. These results indicate lithium-ion transport is not confined within a single nanorod and may provide a paradigm shift for one-dimensional tunnelled materials, particularly towards achieving high-rate capability.
Fibril polymorphism affects immobilized non-amyloid flanking domains of huntingtin exon1 rather than its polyglutamine core
Authors: Lin Hsiang-Kai , Boatz Jennifer C. , Krabbendam Inge E. , Kodali Ravindra , Hou Zhipeng , Wetzel Ronald , Dolga Amalia M. , Poirier Michelle A. , van der Wel Patrick C. A. 
Published: May 2017

AbstractPolyglutamine expansion in the huntingtin protein is the primary genetic cause of Huntington’s disease (HD). Fragments coinciding with mutant huntingtin exon1 aggregate in vivo and induce HD-like pathology in mouse models. The resulting aggregates can have different structures that affect their biochemical behaviour and cytotoxic activity. Here we report our studies of the structure and functional characteristics of multiple mutant htt exon1 fibrils by complementary techniques, including infrared and solid-state NMR spectroscopies. Magic-angle-spinning NMR reveals that fibrillar exon1 has a partly mobile α-helix in its aggregation-accelerating N terminus, and semi-rigid polyproline II helices in the proline-rich flanking domain (PRD). The polyglutamine-proximal portions of these domains are immobilized and clustered, limiting access to aggregation-modulating antibodies. The polymorphic fibrils differ in their flanking domains rather than the polyglutamine amyloid structure. They are effective at seeding polyglutamine aggregation and exhibit cytotoxic effects when applied to neuronal cells.
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain
Authors: Perrin Amandine , Larsonneur Elise , Nicholson Ainsley C. , Edwards David J. , Gundlach Kristin M. , Whitney Anne M. , Gulvik Christopher A. , Bell Melissa E. , Rendueles Olaya , Cury Jean , Hugon Perrine , Clermont Dominique , Enouf Vincent , Loparev Vladimir , Juieng Phalasy , Monson Timothy , Warshauer David , Elbadawi Lina I. , Walters Maroya Spalding , Crist Matthew B. , Noble-Wang Judith , Borlaug Gwen , Rocha Eduardo P. C. , Criscuolo Alexis , Touchon Marie , Davis Jeffrey P. , Holt Kathryn E. , McQuiston John R. , Brisse Sylvain 
Published: May 2017

AbstractAn atypically large outbreak of Elizabethkingia anophelis infections occurred in Wisconsin. Here we show that it was caused by a single strain with thirteen characteristic genomic regions. Strikingly, the outbreak isolates show an accelerated evolutionary rate and an atypical mutational spectrum. Six phylogenetic sub-clusters with distinctive temporal and geographic dynamics are revealed, and their last common ancestor existed approximately one year before the first recognized human infection. Unlike other E. anophelis, the outbreak strain had a disrupted DNA repair mutY gene caused by insertion of an integrative and conjugative element. This genomic change probably contributed to the high evolutionary rate of the outbreak strain and may have increased its adaptability, as many mutations in protein-coding genes occurred during the outbreak. This unique discovery of an outbreak caused by a naturally occurring mutator bacterial pathogen provides a dramatic example of the potential impact of pathogen evolutionary dynamics on infectious disease epidemiology.
Spin-orbit torque-driven skyrmion dynamics revealed by time-resolved X-ray microscopy
Authors: Woo Seonghoon , Song Kyung Mee , Han Hee-Sung , Jung Min-Seung , Im Mi-Young , Lee Ki-Suk , Song Kun Soo , Fischer Peter , Hong Jung-Il , Choi Jun Woo , Min Byoung-Chul , Koo Hyun Cheol , Chang Joonyeon 
Published: May 2017

AbstractMagnetic skyrmions are topologically protected spin textures with attractive properties suitable for high-density and low-power spintronic device applications. Much effort has been dedicated to understanding the dynamical behaviours of the magnetic skyrmions. However, experimental observation of the ultrafast dynamics of this chiral magnetic texture in real space, which is the hallmark of its quasiparticle nature, has so far remained elusive. Here, we report nanosecond-dynamics of a 100nm-diameter magnetic skyrmion during a current pulse application, using a time-resolved pump-probe soft X-ray imaging technique. We demonstrate that distinct dynamic excitation states of magnetic skyrmions, triggered by current-induced spin–orbit torques, can be reliably tuned by changing the magnitude of spin–orbit torques. Our findings show that the dynamics of magnetic skyrmions can be controlled by the spin–orbit torque on the nanosecond time scale, which points to exciting opportunities for ultrafast and novel skyrmionic applications in the future.
TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton
Authors: Cox Kevin L. , Meng Fanhong , Wilkins Katherine E. , Li Fangjun , Wang Ping , Booher Nicholas J. , Carpenter Sara C. D. , Chen Li-Qing , Zheng Hui , Gao Xiquan , Zheng Yi , Fei Zhangjun , Yu John Z. , Isakeit Thomas , Wheeler Terry , Frommer Wolf B. , He Ping , Bogdanove Adam J. , Shan Libo 
Published: May 2017

AbstractTranscription activator-like (TAL) effectors from Xanthomonas citri subsp. malvacearum (Xcm) are essential for bacterial blight of cotton (BBC). Here, by combining transcriptome profiling with TAL effector-binding element (EBE) prediction, we show that GhSWEET10, encoding a functional sucrose transporter, is induced by Avrb6, a TAL effector determining Xcm pathogenicity. Activation of GhSWEET10 by designer TAL effectors (dTALEs) restores virulence of Xcm avrb6 deletion strains, whereas silencing of GhSWEET10 compromises cotton susceptibility to infections. A BBC-resistant line carrying an unknown recessive b6 gene bears the same EBE as the susceptible line, but Avrb6-mediated induction of GhSWEET10 is reduced, suggesting a unique mechanism underlying b6-mediated resistance. We show via an extensive survey of GhSWEET transcriptional responsiveness to different Xcm field isolates that additional GhSWEETs may also be involved in BBC. These findings advance our understanding of the disease and resistance in cotton and may facilitate the development cotton with improved resistance to BBC.
Sublingual house dust mite immunotherapy has no impact on decrease of circulating erythrocytes upon airway allergen challenge in allergic rhinitis
Authors: Jordakieva Galateja , Kundi Michael , Lemell Patrick , Zieglmayer René , Zieglmayer Petra , Godnic-Cvar Jasminka , Jensen-Jarolim Erika 
Published: May 2017

AbstractHouse dust mite (HDM) allergy is a predominant cause for perennial allergic rhinitis (AR) in Europe. We recently reported that circulating erythrocyte numbers decrease after airway allergen challenge in a murine asthma model and in grass-pollen sensitized AR subjects. Consequently, we aimed to evaluate these findings in HDM sensitized AR subjects and the influence of preceding allergen immunotherapy. Seventy-seven (age 26.8 ± 7.3 years; 54.5% female) HDM-allergic rhinitis subjects previously enrolled in a randomized, monocentric sublingual immunotherapy (SLIT) trial at the Vienna Challenge Chamber (VCC) were included. Subjects had either received placebo (n = 22), low-dose HDM (n = 29) or high-dose HDM specific sublingual immunotherapy (n = 26) daily for 24 weeks. Blood sampling was performed before and after 6 hours of HDM allergen exposure. Overall, specific airway allergen challenge resulted in a significant decrease in circulating erythrocytes and hematocrit (p < 0.001), and elevation of leukocytes (p < 0.001), particularly segmented neutrophils (p < 0.001). Gender had no significant effect on the observed changes in circulating blood cells. Erythrocytes decreased and neutrophil counts increased significantly after airway allergen challenge regardless of preceding immunotherapy. These findings imply a rapid systemic mobilization of neutrophils occurring within immediate type hypersensitivity response upon a specific allergen challenge, which is possibly inversely linked with the erythrocyte numbers.
A Benzothiazole Derivative (5g) Induces DNA Damage And Potent G2/M Arrest In Cancer Cells
Authors: Hegde Mahesh , Vartak Supriya V. , Kavitha Chandagirikoppal V. , Ananda Hanumappa , Prasanna Doddakunche S. , Gopalakrishnan Vidya , Choudhary Bibha , Rangappa Kanchugarakoppal S. , Raghavan Sathees C. 
Published: May 2017

AbstractChemically synthesized small molecules play important role in anticancer therapy. Several chemical compounds have been reported to damage the DNA, either directly or indirectly slowing down the cancer cell progression by causing a cell cycle arrest. Direct or indirect reactive oxygen species formation causes DNA damage leading to cell cycle arrest and subsequent cell death. Therefore, identification of chemically synthesized compounds with anticancer potential is important. Here we investigate the effect of benzothiazole derivative (5g) for its ability to inhibit cell proliferation in different cancer models. Interestingly, 5g interfered with cell proliferation in both, cell lines and tumor cells leading to significant G2/M arrest. 5g treatment resulted in elevated levels of ROS and subsequently, DNA double-strand breaks (DSBs) explaining observed G2/M arrest. Consistently, we observed deregulation of many cell cycle associated proteins such as CDK1, BCL2 and their phosphorylated form, CyclinB1, CDC25c etc. Besides, 5g treatment led to decreased levels of mitochondrial membrane potential and activation of apoptosis. Interestingly, 5g administration inhibited tumor growth in mice without significant side effects. Thus, our study identifies 5g as a potent biochemical inhibitor to induce G2/M phase arrest of the cell cycle, and demonstrates its anticancer properties both ex vivo and in vivo.
Efficacy and Tolerability of Second and Third Generation Anti-epileptic Drugs in Refractory Epilepsy: A Network Meta-Analysis
Authors: Zhuo Chuanjun , Jiang Ronghuan , Li Gongying , Shao Mingjing , Chen Ce , Chen Guangdong , Tian Hongjun , Li Jie , Xue Rong , Jiang Deguo 
Published: May 2017

AbstractThis study was proposed to compare the relative efficacy and tolerability of the second and third generation AEDs for refractory epilepsy. The 50% responder rate (RR) was selected as the efficacy outcome whereas the incidence of dizziness and somnolence were considered to evaluate the tolerability of AEDs. Odds ratio (OR) and their 95% credible interval (CrI) were obtained using a consistency model and surface under the cumulative ranking curve (SUCRA) value was calculated to rank AEDs. Topiramate appeared to be significantly more effective than placebo, eslicarbazepine acetate, perampanel, pregabalin, zonisamide, gabapentin and lamotrigine with respect to the 50% RR (all OR > 1). Patients who were managed by eslicarbazepine acetate, perampanel, oxcarbazepine, topiramate and pregabalin were more likely to suffer from dizziness compared to those who receive placebo (all OR > 1). Perampanel, topiramate and pregabalin were related to elevated risks of somnolence compared to placebo (all OR > 1). Moreover, topiramate ranked highest with respect to 50% RR (SUCRA = 0.968) whereas levetiracetam appeared to have balanced efficacy and tolerability (SUCRA = 0.769, 0.743, 0.604 and 0.659). In conclusion, topiramate was the most efficacious AED, while levetiracetam was able to provide patients with balanced efficacy and tolerability.
Potent anti-cancer effects of less polar Curcumin analogues on gastric adenocarcinoma and esophageal squamous cell carcinoma cells
Authors: Alibeiki Fatemeh , Jafari Naser , Karimi Maryam , Peeri Dogaheh Hadi 
Published: May 2017

AbstractCurcumin and its chalcone derivatives inhibit the growth of human cancer cells. It is reported that replacement of two OH groups in curcumin with less polar groups like methoxy increases its anti-proliferative activity. In this study, we explored benzylidine cyclohexanone derivatives with non-polar groups, to see if they possess increased anti-cancer activity. Novel 2,6-bis benzylidine cyclohexanone analogues of curcumin were synthesized, and their inhibitory effects on gastric adenocarcinoma (AGS) and esophageal squamous cell carcinoma (KYSE30) cancer cells were studied using an MTT assay. Cell apoptosis was detected by EB/AO staining, and cell cycle was analyzed by flow cytometry. Real-time PCR was performed for gene expression analysis. All synthesized analogues were cytotoxic toward gastric and esophageal cancer cells and showed lower IC50 values than curcumin. Treatment with 2,6-Bis-(3-methoxy-4-propoxy-benzylidene)-cyclohexanone (BM2) was 17 times more toxic than curcumin after 48 h incubation. All novel compounds were more effective than curcumin in apoptosis induction and cell cycle arrest at G1 phase. These results suggest that less polar analogues of curcumin have potent cytotoxicity in vitro. However, they need to be investigated further, especially with animal tumor models, to confirm their chemotherapeutic activity in vivo.
Molecular alignment in degenerated dissociation channels in strong laser fields
Authors: Lai Wei , Heins Alan , Guo Chunlei 
Published: May 2017

AbstractIn this work, we study strong-field molecular alignment in, for the first time, degenerated channels following the same charged states of molecules. By measuring the angular distribution of dissociation fragments from two degenerated N+ + N+ channels of N2, we observe an opposite angular distribution development in these two channels, one expanding and one contracting, when the laser intensity increases. Our further study shows that the expanding channel comes from a nonsequential transition, while the contracting channel involves a sequential transition. We also study the time sequence of the sequential and nonsequential transitions and find that the opposite angular distribution development is due to the different degrees of molecular alignment in these two degenerated channels.
Dynamic control of coherent pulses via destructive interference in graphene under Landau quantization
Authors: Yang Wen-Xing , Chen Ai-Xi , Xie Xiao-Tao , Liu Shaopeng , Liu Shasha 
Published: May 2017

AbstractWe analyze the destructive interference in monolayer graphene under Landau quantization in a time-dependent way by using the Bloch-Maxwell formalism. Based on this analysis, we investigate the dynamics control of an infrared probe and a terahertz (THz) switch pulses in graphene. In presence of the THz switch pulse, the destructive interference take places and can be optimized so that the monolayer graphene is completely transparent to the infrared probe pulse. In absence of the THz switch pulse, however, the infrared probe pulse is absorbed due to such a interference does not take place. Furthermore, we provide a clear physics insight of this destructive interference by using the classical dressed-state theory. Conversely, the present model may be rendered either absorbing or transparent to the THz switch pulse. By choosing appropriate wave form of the probe and switch pulses, we show that both infrared probe and THz switch pulses exhibit the steplike transitions between absorption and transparency. Such steplike transitions can be used to devise a versatile quantum interference-based solid-state optical switching with distinct wave-lengths for optical communication devices.
The agglomeration, coalescence and sliding of nanoparticles, leading to the rapid sintering of zirconia nanoceramics
Authors: Kocjan Andraž , Logar Manca , Shen Zhijian 
Published: May 2017

AbstractConventional sintering is a time- and energy-consuming process used for the densification of consolidated particles facilitated by atomic diffusion at high temperatures. Nanoparticles, with their increased surface free energy, can promote sintering; however, size reduction also promotes agglomeration, so hampering particle packing and complete densification. Here we show how the ordered agglomeration of zirconia primary crystallites into secondary particle assemblies ensures their homogeneous packing, while also preserving the high surface energy to higher temperatures, increasing the sintering activity. When exposed to intense electromagnetic radiation, providing rapid heating, the assembled crystallites are subjected to further agglomeration, coalescence and sliding, leading to rapid densification in the absence of extensive diffusional processes, cancelling out the grain growth during the initial sintering stages and providing a zirconia nanoceramic in only 2 minutes at 1300 °C.
Determinants of Quantitative Optical Coherence Tomography Angiography Metrics in Patients with Diabetes
Authors: Tang Fang Yao , Ng Danny S. , Lam Alexander , Luk Fiona , Wong Raymond , Chan Carmen , Mohamed Shaheeda , Fong Angie , Lok Jerry , Tso Tiffany , Lai Frank , Brelen Marten , Wong Tien Y. , Tham Clement C. , Cheung Carol Y. 
Published: May 2017

AbstractEarly microvascular damage in diabetes (e.g. capillary nonperfusion and ischemia) can now be assessed and quantified with optical coherence tomography-angiography (OCT-A). The morphology of vascular tissue is indeed affected by different factors; however, there is a paucity of data examining whether OCT-A metrics are influenced by ocular, systemic and demographic variables in subjects with diabetes. We conducted an observational cross-sectional study and included 434 eyes from 286 patients with diabetes. Foveal avascular zone (FAZ) area, FAZ circularity, total and parafoveal vessel density (VD), fractal dimension (FD), and vessel diameter index (VDI) from the superficial capillary plexus OCT-angiogram were measured by a customized automated image analysis program. We found that diabetic retinopathy (DR) severity was associated with increased FAZ area, decreased FAZ circularity, lower VD, lower FD, and increased VDI. Enlarged FAZ area was correlated with shorter axial length and thinner central subfield macular thickness. Decreased FAZ circularity was correlated with a reduction in visual function. Decreased VD was correlated with thinner macular ganglion-cell inner plexiform layer. Increased VDI was correlated with higher fasting glucose level. We concluded that the effects of ocular and systemic factors in diabetics should be taken into consideration when assessing microvascular alterations via OCT-A.
Combinatorial Delivery of Dual and Triple TLR Agonists via Polymeric Pathogen-like Particles Synergistically Enhances Innate and Adaptive Immune Responses
Authors: Madan-Lala Ranjna , Pradhan Pallab , Roy Krishnendu 
Published: May 2017

AbstractDespite decades of research very few vaccine-adjuvants have received FDA approval. Two fundamental challenges plague clinical translation of vaccine-adjuvants: reducing acute toxicities that result from systemic diffusion of many soluble adjuvants, and delivering multiple adjuvants at the same time to mimic the synergistic immune-stimulation of pathogens, while being safe. In order to address these barriers, we evaluated combinations of four clinically relevant immune-agonists, specifically Toll-like receptor (TLR) ligands, using biodegradable, polymer microparticles. We tested them alone and in combinations of 2 or 3, for a total of 10 unique conditions. We evaluated primary bone-marrow-derived Dendritic Cell phenotypes and functionality, and identified several synergistic combinations. We picked a dual and a triple adjuvant combination, TLR4/TLR9 and TLR4/TLR7/TLR9, for further evaluation and found that both combinations promoted antigen cross-presentation in vitro. Studies in mice using the model antigen Ovalbumin, showed that both combinations enhanced lymph node germinal center and T follicular helper cell responses. The triple adjuvant combination showed increased antigen-specific antibody titer with an overall balanced Th1/Th2 response, while the dual combination promoted Th1-polarized IgG responses. Our results show how polymeric particulate-carriers can be adopted to safely deliver combinatorial adjuvants and selectively synergize specific types of immune responses for vaccine applications.
Adaptation to Progressive Additive Lenses: Potential Factors to Consider
Authors: Alvarez Tara L. , Kim Eun H. , Granger-Donetti Bérangère 
Published: May 2017

AbstractPeople develop presbyopia as part of the normal aging process. Most presbyopes adapt to progressive additive lens (PALs), while others do not. This investigation sought to determine whether the ability to modify disparity vergence or phoria was correlated to PALs adaptation. In experiment 1, a double-step paradigm quantified the ability to modify convergence responses in sixteen presbyopes. In experiment 2, thirty-one incipient presbyopes participated in a 5-minute sustained fixation task to evoke phoria adaptation where the magnitude and rate of phoria adaptation were measured. Then, the experiment was repeated after wearing PALs for one month. Linear regression analyses were conducted between the following parameters: near point of convergence, positive fusional vergence at near, vergence facility, net change in the magnitude of phoria adaptation, and the rate of phoria adaptation. The ability to change convergence average peak velocity was significantly greater (p < 0.03) in presbyopic PALs adapters compared to presbyopic PALs non-adapters. The rate of phoria adaptation and vergence facility were significantly greater (p < 0.03) in incipient presbyopic PALs adapters compared to incipient presbyopic PALs non-adapters. Vergence facility and the rate of phoria adaptation may have potential clinical utility in differentiating which patients may adapt to PALs and which ones will have more difficulty.