bluuebunny/crossref_metadata_2025_split huggingface dataset:
Posttraumatic Oculorrhea From the Eyelid
Authors: Batur Muhammed , Seven Erbil , Aycan Abdurrahman , Çinal Adnan , Yaşar Tekin 
Published: January 2017

Abstract
We report a 21-month-old boy with a sutured laceration of the left upper eyelid with drainage of cerebrospinal fluid. Careful evaluation, including computerized tomography, revealed a penetrating injury of the left orbital wall and a linear bone fracture. The wound was resutured carefully. There was no cerebrospinal fluid leakage in the postoperative follow-up period.
A Vibrating Cold Device to Reduce Pain in the Pediatric Emergency Department
Authors: Potts Debra Ann , Davis Katherine Finn , Elci Okan U. , Fein Joel A. 
Published: January 2017

Objective
Pain of intravenous (IV) catheter insertion can be mitigated with appropriate analgesia, thereby avoiding unnecessary distress. Our objective was to compare the self-reported pain of IV catheter insertion in children when using a vibrating cold device (VCD) versus standard of care 4% topical lidocaine cream (TL).

Methods
This was a 2-arm randomized controlled noninferiority trial with a convenience sample of 4- to 18-year-olds requiring nonemergent IV catheter insertion. Self-reported pain was measured with the Faces Pain Scale—Revised, anxiety with the Child’s Rating of Anxiety scale, and observed pain with the Face, Legs, Activity, Crying, Consolability scale. Caregivers and nurses completed satisfaction surveys.

Results
Two hundred twenty-four children were included in the analysis: 114 (90%) of 127 in the VCD group and 110 (89%) of 124 in the TL group. Faces Pain Scale—Revised scores for both groups were equivalent (median, 2.0 cm; interquartile range, 0–5 cm; linear regression difference, 0 [95% confidence interval, −0.82 to 0.82]), as were median Face, Legs, Activity, Crying, Consolability scale scores (difference, 0.33 [95% confidence interval, −0.01 to 0.68]). The time of completion for the IV procedure was significantly shorter for the VCD group compared with the TL group (median, 3.0 vs 40.5 minutes; P < 0.0001). There were no significant differences between groups for self-reported state or trait anxiety, success of IV catheter insertion on first attempt, or satisfaction of caregivers or staff.

Conclusions
A VCD and TL showed equal effectiveness in reducing pain and distress for children undergoing IV catheter insertion. The VCD has the added benefit of quick onset time and an acceptable alternative for caregivers and nurses.
Omega-3 Supplementation and the Neural Correlates of Negative Affect and Impulsivity: A Double-Blind, Randomized, Placebo-Controlled Trial in Midlife Adults
Authors: Ginty Annie T. , Muldoon Matthew F. , Kuan Dora C.H. , Schirda Brittney , Kamarck Thomas W. , Jennings J. Richard , Manuck Stephen B. , Gianaros Peter J. 
Published: January 2017

ABSTRACT

Objective
In clinical trials, omega-3 fatty acid supplementation improves symptoms in psychiatric disorders involving dysregulated mood and impulse control, yet it is unclear whether in healthy adults, omega-3 fatty acid supplementation affects mood, impulse control, and the brain systems supporting these processes. Accordingly, this study tested the hypotheses that eciosapentaenoic (EPA) and docosahexaenoic (DHA) acid supplementation reduces negative affect and impulsive behaviors in healthy adults and that these changes correspond to alterations in corticolimbic and corticostriatal brain systems, which support affective and impulsive processes.

Methods
Healthy volunteers (N = 272) consuming 300 mg/d or less of EPA and DHA were enrolled in a double-blind, randomized, placebo controlled clinical trial. The participants received either capsules providing 1000 mg of EPA and 400 mg of DHA versus identical appearing soybean oil capsules per day for 18 weeks. Negative affect and impulsivity were measured by questionnaire and ecological momentary assessment, as well as functional alterations in corticolimbic and corticostriatal brain systems evoked by standardized functional magnetic resonance imaging tasks.

Results
There were no group by time interactions for any questionnaire or ecological momentary assessment measures of mood and impulsivity. Likewise, no group by time interactions were observed for functional magnetic resonance imaging responses evoked within corticolimbic and corticostriatal systems.

Conclusions
In healthy adults with low intake of omega-3 fatty acids, moderate-dose supplementation for 18 weeks did not alter affect or impulsive behaviors nor alter corticolimbic and corticostriatal brain functionality.

Trial Registration
Trial number NCT00663871.
Sulfasalazine-Related Hypersensitivity Reactions in Patients With Rheumatic Diseases
Authors: Cildag Songul , Senturk Taskin 
Published: January 2017

Background
Sulfasalazine (SSZ), which has an arylamine sulfonamide structure, is an anti-inflammatory drug used in the treatment of many rheumatic diseases. Various adverse effects have been reported related to SSZ. In the present study, we aimed to define the frequency of SSZ-related hypersensitivity reaction in patients with rheumatoid arthritis and ankylosing spondylitis.

Methods
A total of 136 patients were included in this study. During follow-ups, reaction type, reaction duration, and drug doses were recorded in patients who developed hypersensitivity reactions. Drugs were discontinued in patients who developed reactions, and they were treated with antihistaminics and/or corticosteroids, according to requirements. Drug provocation tests with the drugs and aminosalicylic acid were performed in patients with negative skin prick test individually.

Results
A total of 136 patients, with ages ranging from 19 to 71 years (mean, 41.97 [SD, 12.04] years), were included in the study. Hypersensitivity reactions according to the drug provocation test were found against SSZ in 12 patients (8.8%). The SSZ-related hypersensitivity reaction types were urticaria in 7 patients, urticaria and angioedema in 4 patients, and pruritus in 1 patient.

Conclusions
Sulfasalazine is widely used by rheumatologists in the treatment of rheumatic diseases. Whereas the frequency of sulfonamide-related hypersensitivity reactions was reported as 3.0% in the population, we detected hypersensitivity reactions to be 8.8% with SSZ usage in rheumatic diseases.
Violence-related Versus Terror-related Stabbings
Authors: Rozenfeld Michael , Givon Adi , Peleg Kobi 
Published: January 2017

Objective:
To demonstrate the gap between injury epidemiology of terror-related stabbings (TRS) and non–terror-related intentional stabbings.

Background:
Terror attacks with sharp instruments have multiplied recently, with many victims of these incidents presented to hospitals with penetrating injuries. Because most practical experience of surgeons with intentional stabbing injuries comes from treating victims of interpersonal violence, potential gaps in knowledge may exist if injuries from TRS significantly differ from interpersonal stabbings (IPS).

Methods:
A retrospective study of 1615 patients from intentional stabbing events recorded in the Israeli National Trauma Registry during the period of “Knife Intifada” (January 2013–March 2016). All stabbings were divided into TRS and IPS. The 2 categories were compared in terms of sustained injuries, utilization of hospital resources, and clinical outcomes.

Results:
TRS patients were older, comprised more females and were ethnically homogenous. Most IPS incidents happened on weekdays and at night hours, whereas TRS events peaked midweek during morning and afternoon hours. TRS patients had more injuries of head, face, and neck, and severe head and neck injuries. IPS patients had more abdomen injuries; however, respective injuries in the TRS group were more severe. Greater injury severity of the TRS patients reflected on their higher hospital resources utilization and greater in-hospital mortality.

Conclusions:
Victims of terror stabbings are profoundly different in their characteristics, sustain injuries of a different profile and greater severity, require more hospital resources, and have worse off clinical outcomes, emphasizing the need of the healthcare systems to adjust itself appropriately to deal successfully with future terror attacks.
Phylodynamics without trees: estimating R0 directly from pathogen sequences
Authors: Plazzotta Giacomo , Colijn Caroline 
Published: January 2017

AbstractWe develop a new tree-free phylodynamic method to estimate the reproduction number (R0) of a pathogen from large numbers of sequences of a pathogen. It is based on the convergence of the cherry-to-tip ratio (CTR) to a constant depending on R0 in supercritical branching trees. It is a tree-free method because tree reconstruction is not required: the number of cherries and the CTR is estimated directly from the sequences using the new computational method Cherries Without Tree (CWT). With simulations, we compare CWT to other methods currently in use. We use the new inference method to estimate R0 from simulated sequences and discuss its accuracy. We explore the potential bias arising from sub-sampling.
From affect to control: Functional specialization of the insula in motivation and regulation
Authors: Wager Tor D , Barrett Lisa Feldman 
Published: January 2017

AbstractThe insula plays a key role in a wide range of brain processes, from viscerosensation and pain to motivation, emotion, and cognitive control. While human neuroimaging studies in all these domains report activations in the insula, little systematic attention is paid to anatomical subdivisions that may provide the basis for functional sub-regions. We conducted a meta-analysis of insular tasks across studies in four domains: emotion, pain, attention switching, and working memory. Using a priori subdivision of the insula based on anatomical studies, we provide evidence that different sub-regions are preferentially activated in different tasks. We suggest that the ventral anterior insula is most important for core affect, a term that describes broadly-tuned motivational states (e.g., excitement) with associated subjective feelings. The dorsal anterior insula, by contrast, may be critical for developing and updating motivational states with specific associated actions (i.e., goals). This region is activated by cognitive control tasks, pain, and some tasks that elicit affective processing. The posterior insula, including SII and portions of parietal operculum, is distinctly activated by pain, providing a double dissociation between pain and tasks that elicit emotions.
A defined platform of human peri-gastrulation-like biological fate patterning reveals coordination between Reaction-Diffusion and Positional-Information
Authors: Tewary Mukul , □stblom Joel , Shakiba Nika , Zandstra Peter W. 
Published: January 2017

AbstractHow position dependent cell fate acquisition occurs during embryogenesis has been a central question in developmental biology. To study this process, we developed a defined, high-throughput assay using BMP4 to induce peri-gastrulation-like fate patterning in geometrically constrained human pluripotent stem cell colonies. We observed that, upon BMP4 treatment, phosphorylated SMAD1 (pSMAD1) activity in the colonies organized into a radial gradient – an observation mechanistically compliant with a BMP4-NOGGIN Reaction-Diffusion (RD) model. Consequent fate acquisition occurred as a function of both the pSMAD1 signaling strength, and induction time – consistent with the Positional-Information (PI) paradigm. Our findings implicate coordination between RD and PI underlying the peri-gastrulation-like fate patterning. This model not only predicts experimental results of perturbing key parameters like colony size, and BMP4 dose, but also identifies experimental conditions that rescue patterning in colonies of sizes that have been reported to be patterning-reticent, and recapitulate RD-like periodic patterns in large colonies.
Chemotaxis microsimulation: On the gain in nutrient uptake and bacterial cell division with chemotaxis mechanism
Authors: Saha Soutick , Sruthi C. K. , Prakash Meher K. 
Published: January 2017

AbstractBacterial swimming alternates between straight runs for several seconds and tumbles into random directions. Chemotactic bacteria remember nutrient sensing history, change tumble frequency to move toward nutrients. A question that has not been addressed is the significance of the nutrition gain and multiplication of bacterial population with chemotaxis mechanism. To quantify these effects, we introduce a microsimulation model, which seamlessly integrates detailed observations and assumptions about single bacterial tumbles, noisy sensing and nutrient uptake for studying up to a few millions of them in a population. We use the model to simulate absorption of nutrients from lysis and agar plates. Contrary to an intuitive feeling that chemotaxis could be useful under nutrient starvation, we see a significant effect only under nutrient rich conditions where bacteria with chemotaxis outgrow their non-chemotactic counterparts by hundreds of times. The model offers the flexibility to study the consequences of newer assumptions, and experimental conditions.Author SummaryChemotaxis is a mechanism that helps bacteria navigate towards nutrients. Several aspects of the mechanism have been well studied over the past 50 years. As most bacterial mechanisms are helpful evolutionarily to survive and to multiply, it would be a natural question to ask how much this swim helps bacteria to gain nutrition and consequently to multiply. However to our knowledge this question has not been asked. We develop a model that integrates bacterial motion, with sensing and nutrient uptake and show that only under nutrient rich conditions this mechanism helps.
Medicago truncatulaZinc-Iron Permease6 provides zinc to rhizobia-infected nodule cells
Authors: Abreu Isidro , Saéz Ángela , Castro-Rodríguez Rosario , Escudero Viviana , Rodríguez-Haas Benjamín , Senovilla Marta , Larue Camille , Grolimund Daniel , Tejada-Jiménez Manuel , Imperial Juan , González-Guerrero Manuel 
Published: January 2017

Abstract:Zinc is a micronutrient required for symbiotic nitrogen fixation. It has been proposed that in model legumeMedicago truncatula, zinc is delivered in a similar fashion as iron,i.e.by the root vasculature into the nodule and released in the infection/differentiation zone. There, zinc transporters must introduce this element into rhizobia-infected cells to metallate the apoproteins that use zinc as a cofactor.MtZIP6(Medtr4g083570) is aM. truncatulaZinc-Iron Permease (ZIP) that is expressed only in roots and nodules, with the highest expression levels in the infection/differentiation zone. Immunolocalization studies indicate that it is located in the plasma membrane of rhizobia-infected cells in the nodule. Down-regulatingMtZIP6expression levels with RNAi does not result in any strong phenotype when plants are being watered with mineral nitrogen. However, these silenced plants displayed severe growth defects when they depended on nitrogen fixed by their nodules, as a consequence of the loss of 80% of their nitrogenase activity. The reduction of this activity was not the result of iron not reaching the nodule, but an indirect effect of zinc being retained in the infection/differentiation zone and not reaching the cytosol of rhizobia-infected cells. These data are consistent with a model in which MtZIP6 would be responsible for zinc uptake by rhizobia-infected nodule cells in the infection/differentiation zone.
Medicago truncatulaMOT1.3 is a plasma membrane molybdenum transporter required for nitrogenase activity in root nodules
Authors: Tejada-Jiménez Manuel , Gil-Díez Patricia , León-Mediavilla Javier , Wen Jiangqi , Mysore Kirankumar S. , Imperial Juan , González-Guerrero Manuel 
Published: January 2017

SummaryMolybdenum, as a component of the iron-molybdenum cofactor of nitrogenase, is essential for symbiotic nitrogen fixation. This nutrient has to be provided by the host plant through molybdate transporters.Members of the molybdate transporters family MOT1 were identified in the model legumeMedicago truncatulaand their expression in nodules determined. Yeast toxicity assays, confocal microscopy, and phenotypical characterization of aTnt1insertional mutant line were carried out in the oneM. truncatulaMOT1 family member expressed specifically in nodules.Among the five MOT1 members present inM. truncatulagenome,MtMOT1.3is the only one uniquely expressed in nodules. MtMOT1.3 shows molybdate transport capabilities when expressed in yeast. Immunolocalization studies revealed that MtMOT1.3 is located in the plasma membrane of nodule cells. Amot1.3-1knockout mutant showed an impaired growth concomitant with a reduction in nitrogenase activity. This phenotype was rescued by increasing molybdate concentrations in the nutritive solution, or upon addition of an assimilable nitrogen source. Furthermore,mot1.3-1plants transformed with a functional copy ofMtMOT1.3showed a wild type-like phenotype.These data are consistent with a model in which MtMOT1.3 would be responsible for introducing molybdate into nodule cells, which will be later used to synthesize functional nitrogenase.
Basal forebrain gating by somatostatin neurons drives cortical activity
Authors: Espinosa Nelson , Alonso Alejandra , Morales Cristian , Fuentealba Pablo 
Published: January 2017

AbstractThe basal forebrain provides modulatory input to the cortex regulating brain states and cognitive processing. Somatostatin-expressing cells constitute a local GABAergic source known to functionally inhibit the major cortically-projecting cell types. However, it remains unclear if somatostatin cells can regulate the basal forebrain’s synaptic output and thus control cortical dynamics. Here, we demonstrate in mice that somatostatin neurons regulate the corticopetal synaptic output of the basal forebrain impinging on cortical activity and behavior. Optogenetic inactivation of somatostatin neurons in vivo increased spiking of some basal forebrain cells, rapidly enhancing and desynchronizing neural activity in the prefrontal cortex, inhibiting slow rhythms and increasing gamma oscillations. Locomotor activity was specifically increased in quiescent animals, but not in active mice. Altogether, we provide physiological and behavioral evidence indicating that somatostatin cells are pivotal in gating the synaptic output of the basal forebrain, thus indirectly controlling cortical operations via both cholinergic and non-cholinergic mechanisms.
The butterfly effect: amplification of local changes along the temporal processing hierarchy
Authors: Yeshurun Y , Nguyen M , Hasson U. 
Published: January 2017

AbstractChanging just a few words in a story can induce a substantial change in the overall narrative. How does the brain accumulate and process local and sparse changes, creating a unique situation model of the story, over the course of a real-life narrative? Recently, we mapped a hierarchy of processing timescales in the brain: from early sensory areas that integrate information over 10s-100s ms, to high-order areas that integrate information over many seconds to minutes. Based on this hierarchy, we hypothesize that early sensory areas would be sensitive to local changes in word use, but that there will be increasingly divergent neural responses along the processing hierarchy as higher-order areas accumulate and amplify these local changes. To test this hypothesis, we created two structurally related but interpretively distinct narratives by changing some individual words. We found that the neural response distance between the stories was amplified as story information is transferred from low-level regions (e.g. early auditory cortex) to high-level regions (e.g precuneus and prefrontal cortex) and that the neural difference between stories is highly correlated with an area’s ability to integrate information over time. Our results suggest a neural mechanism by which two similar situations become easy to distinguish.
Genome-wide association mapping of correlated traits in cassava: dry matter and total carotenoid content
Authors: Rabbi Ismail Y. , Udoh Lovina I. , Wolfe Marnin , Parkes Elizabeth Y. , Gedil Melaku A. , Dixon Alfred , Ramu Punna , Jannink Jean-Luc , Kulakow Peter 
Published: January 2017

ABSTRACTCassava (Manihot esculenta(L.) Crantz) is a starchy root crop cultivated in the tropics for fresh consumption and commercial processing. Dry matter content and micronutrient density, particularly of provitamin A – traits that are negatively correlated – are among the primary selection objectives in cassava breeding. This study aimed at identifying genetic markers associated with these traits and uncovering the potential underlying cause of their negative correlation – whether linkage and/or pleiotropy. A genome-wide association mapping using 672 clones genotyped at 72,279 SNP loci was carried out. Root yellowness was used indirectly to assess variation in carotenoid content. Two major loci for root yellowness was identified on chromosome 1 at positions 24.1 and 30.5 Mbp. A single locus for dry matter content that co-located with the 24.1 Mbp peak for carotenoid content was identified. Haplotypes at these loci explained a large proportion of the phenotypic variability. Evidence of mega-base-scale linkage disequilibrium around the major loci of the two traits and detection of the major dry matter locus in independent analysis for the white- and yellow-root subpopulations suggests that physical linkage rather that pleiotropy is more likely to be the cause of the negative correlation between the target traits. Moreover, candidate genes for carotenoid (phytoene synthase) and starch biosynthesis (UDP-glucose pyrophosphorylaseandsucrose synthase) occurred in the vicinity of the identified locus at 24.1 Mbp. These findings elucidate on the genetic architecture of carotenoids and dry matter in cassava and provides an opportunity to accelerate genetic improvement of these traits.CORE IDEASCassava, a starchy root crop, is a major source of dietary calories in the tropics.Most varieties consumed are poor in micronutrients, including pro-vitamin A.These two traits are governed by few major loci on chromosome one.Genetic linkage, rather than pleiotropy, is the most likely cause of their negative correlation.
Re-evaluating functional landscape of the cardiovascular system during development
Authors: Takada Norio , Omae Madoka , Sagawa Fumihiko , Chi Neil C. , Endo Satsuki , Kozawa Satoshi , Sato Thomas N. 
Published: January 2017

ABSTRACTThe cardiovascular system facilitates body-wide distribution of oxygen, a vital process for development and survival of virtually all vertebrates. However, zebrafish, a vertebrate model organism, appears to form organs and survive mid-larval periods without the functional cardiovascular system. Despite such dispensability, it is the first organ to develop. Such enigma prompted us to hypothesize yet other cardiovascular functions that are important for developmental and/or physiological processes. Hence, systematic cellular ablations and functional perturbations are performed on zebrafish cardiovascular system to gain comprehensive and body-wide understanding of such functions and to elucidate underlying mechanisms. This approach identifies a set of organ-specific genes, each implicated for important functions. The study also unveils distinct cardiovascular mechanisms, each differentially regulating their expressions in organ-specific and oxygen-independent manners. Such mechanisms are mediated by organ-vessel interactions, circulation-dependent signals, and circulation-independent beating-heart-derived signals. Hence, a comprehensive and body-wide functional landscape of the cardiovascular system reported herein may provide a clue as to why it is the first organ to develop. Furthermore, the dataset herein could serve as a resource for the study of organ development and function.SUMMARY STATEMENTThe body-wide landscape of the cardiovascular functions during development is reported. Such landscape may provide a clue as to why the cardiovascular system is the first organ to develop.