bluuebunny/crossref_metadata_2025_split huggingface dataset:
Weather events influence survival and recruitment of Coereba flaveola (Bananaquit) in the Caribbean
Authors: Boal Clint W , Bibles Brent D 
Published: October 2024

ABSTRACT
The West Indies is considered a biodiversity hotspot and a priority for ecological conservation efforts. Understanding how environmental conditions influence the survival of resident avifauna is an important information need given the predicted increases in drought and the frequency and intensity of severe storms in the region. Throughout much of the Caribbean, Coereba flaveola (Bananaquit) are widespread and abundant, traits that may facilitate understanding their response to environmental changes in the region. We used a 10-yr capture–mark–recapture data set to examine C. flaveola survival, recruitment, population growth, and age structure in the context of monthly and seasonal precipitation and temperatures, drought conditions, and occurrence and intensity of storm events. Our models suggested wing length, occurrence of storms, and drought all influenced survival. Both the incidence of storms and drier-than-average conditions in the preceding wet season (April–June) decreased survival. The sex of bird and net hours influenced capture probability, but weather influences on recruitment were equivocal. During nonstorm years, mean population growth was stable at 1.019 (95% confidence interval [CI]: 0.962, 1.098) but dropped to 0.843 (95% CI: 0.795, 0.846) in storm years. Increasing frequency of storms, such as back-to-back years, would likely push the growth rate lower. A protracted pattern of increased storm frequency, especially if coupled with a subsequent drought during the wet season, may lead to localized extirpations or strongly reduced populations.
Targeted nuclear degranulation of neutrophils promotes the progression of pneumonia in ulcerative colitis
Authors: Shao Yiming , Zheng Qibing , Zhang Xiaobei , Li Ping , Gao Xingxin , Zhang Liming , Xu Jiahong , Meng Lingchao , Tian Yanyun , Zhang Qinqin , Zhou Guangxi 
Published: October 2024

Abstract

Background
Both intestinal and pulmonary systems are parts of the mucosal immune system, comprising ∼80% of all immune cells. These immune cells migrate or are transported between various mucosal tissues to maintain tissue homeostasis.

Methods
In this study, we isolated neutrophils from the peripheral blood of patients and utilized immunofluorescence, flow cytometry, and Western blotting to confirm the incidence of “nucleus-directed degranulation” in vitro. Subsequently, we conducted a precise analysis using arivis software. Furthermore, using the DSS mouse model of colitis and tissue clearing technologies, we validated the “targeted nuclear degranulation” of neutrophils and their migration to the lungs in an inflammatory intestinal environment.

Result
In this study, we found that among patients with ulcerative colitis, the migration of neutrophils with “targeted nuclear degranulation” from the intestinal mucosa to the lungs significantly exacerbates lung inflammation during pulmonary infections. Notably, patients with ulcerative colitis exhibited a higher abundance of neutrophils with targeted nuclear degranulation. Using DSS mice, we observed that neutrophils with targeted nuclear degranulation from the intestinal mucosa migrated to the lung and underwent activation during pulmonary infections. These neutrophils rapidly released a high amount of neutrophil extracellular traps to mediate the progression of lung inflammation. Alterations in the neutrophil cytoskeleton and its interaction with the nuclear membrane represent the primary mechanisms underlying targeted nuclear degranulation.

Conclusion
This study revealed that neutrophils accelerate lung inflammation progression in colitis, offering new insights and potential treatment targets for lung infections for patients with colitis.
Different multicellular trichome types coordinate herbivore mechanosensing and defense in tomato
Authors: Sun Chao , Wei JinBo , Gu XinYun , Wu MinLiang , Li Meng , Liu YiXi , An NingKai , Wu KeMeng , Wu ShaSha , Wu JunQing , Xu MeiZhi , Wu Jia-Chen , Wang Ya-Ling , Chao Dai-Yin , Zhang YouJun , Wu Shuang 
Published: October 2024

Abstract
Herbivore-induced wounding can elicit a defense response in plants. However, whether plants possess a surveillance system capable of detecting herbivore threats and initiating preparatory defenses before wounding occurs remains unclear. In this study, we reveal that tomato (Solanum lycopersicum) trichomes can detect and respond to the mechanical stimuli generated by herbivores. Mechanical stimuli are preferentially perceived by long trichomes, and this mechanosensation is transduced via intra-trichome communication. This communication presumably involves calcium waves, and the transduced signals activate the jasmonic acid signaling pathway in short glandular trichomes, resulting in the upregulation of the Woolly (Wo)-SlMYC1 regulatory module for terpene biosynthesis. This induced defense mechanism provides plants with an early warning system against the threat of herbivore invasion. Our findings represent a perspective on the role of multicellular trichomes in plant defense and the underlying intra-trichome communication.
Four MYB transcription factors regulate suberization and nonlocalized lignification at the root endodermis in rice
Authors: Chen Xingxiang , Liu Kui , Luo Tingting , Zhang Baolei , Yu Jinyu , Ma Dan , Sun Xiaoqian , Zheng Huawei , Xin Boning , Xia Jixing 
Published: October 2024

Abstract
In response to variable environments, rice (Oryza sativa) roots have developed lignified and suberized diffusion barriers at the endodermis to permit selective nutrient uptake for optimal growth. Here, we demonstrate that endodermal suberization and nonlocalized lignification are redundantly regulated by 4 MYB transcription factors: OsMYB39a, OsMYB41, OsMYB92a, and OsMYB92b. These transcription factors function downstream of the OsMYB36a/b/c, CASPARIAN STRIP INTEGRITY FACTOR (OsCIF)–SCHENGEN3 (OsSGN3), and stress-inducible signaling pathways in rice. Knockout of all 4 MYB genes resulted in the complete absence of endodermal suberin lamellae (SL) and almost no lignin deposition between the Casparian strip and the cortex-facing lignified band at cell corners under all conditions examined. In contrast, endodermis-specific overexpression of any of these MYB genes was sufficient to induce strong endodermal suberization and nonlocalized lignification near the root tip. Furthermore, OsMYB92a-overexpressing lines showed an altered ionomic profile and enhanced salinity tolerance. Transcriptome analysis identified 152 downstream genes regulated by OsMYB39a/41/92a/92b, including the key SL formation gene OsCYP86A1 and other genes involved in endodermal lignification and suberization under normal and stress conditions. Our results provide important insights into the molecular mechanisms underlying suberization and nonlocalized lignification at the root endodermis and their physiological significance in ion homeostasis and acclimation to environmental stress.
Arabidopsis calcium-dependent protein kinases 4/5/6/11 negatively regulate hydrotropism via phosphorylation of MIZU-KUSSEI1
Authors: Ju Chuanfeng , Javed Laiba , Fang Yanjun , Zhao Yuqing , Cao Chenyu , Deng Yuan , Gao Yaqi , Sun Lv , Wang Cun 
Published: October 2024

Abstract
Hydrotropism facilitates the orientation of plant roots toward regions of elevated water potential, enabling them to absorb adequate water. Although calcium signaling plays a crucial role in plant response to water tracking, the exact regulatory mechanisms remain a mystery. Here, we employed the Arabidopsis (Arabidopsis thaliana) hydrotropism-specific protein MIZU-KUSSEI1 (MIZ1) as bait and found that calcium-dependent protein kinases 4/5/6/11 (CPK4/5/6/11) interacted with MIZ1 in vitro and in vivo. The cpk4/5/6/11 mutant exhibited increased sensitivity to water potential and enhanced root tip curvature. Furthermore, CPK4/5/6/11 primarily phosphorylated MIZ1 at Ser14/36 residues. Additionally, CPK-mediated phosphorylation of MIZ1 relieved its inhibitory effect on the activity of the endoplasmic reticulum–localized Ca2+ pump ECA1, altering the balance between cytoplasmic Ca2+ inflow and outflow, thereby negatively regulating the hydrotropic growth of plants. Overall, our findings unveil the molecular mechanisms by which the CPK4/5/6/11-MIZ1 module functions in regulating plant hydrotropism responses and provide a theoretical foundation for enhancing plant water use efficiency and promoting sustainable agriculture.
TYPHON proteins are RAB-dependent mediators of the trans-Golgi network secretory pathway
Authors: Baral Anirban , Gendre Delphine , Aryal Bibek , Fougère Louise , Di Fino Luciano Martin , Ohori Chihiro , Sztojka Bernadette , Uemura Tomohiro , Ueda Takashi , Marhavý Peter , Boutté Yohann , Bhalerao Rishikesh P 
Published: October 2024

Abstract
The trans-Golgi network (TGN), a key compartment in endomembrane trafficking, participates in both secretion to and endocytosis from the plasma membrane. Consequently, the TGN plays a key role in plant growth and development. Understanding how proteins are sorted for secretion or endocytic recycling at the TGN is critical for elucidating mechanisms of plant development. We previously showed that the protein ECHIDNA is essential for phytohormonal control of hypocotyl bending because it mediates secretion of cell wall components and the auxin influx carrier AUXIN RESISTANT 1 (AUX1) from the TGN. Despite the critical role of ECHIDNA in TGN-mediated trafficking, its mode of action remains unknown in Arabidopsis (Arabidopsis thaliana). We therefore performed a suppressor screen on the ech mutant. Here, we report the identification of TGN-localized TYPHON 1 (TPN1) and TPN2 proteins. A single amino acid change in either TPN protein causes dominant suppression of the ech mutant's defects in growth and AUX1 secretion, while also restoring wild-type (WT)-like ethylene-responsive hypocotyl bending. Importantly, genetic and cell biological evidence shows that TPN1 acts through RAS-ASSOCIATED BINDING H1b (RABH1b), a TGN-localized RAB-GTPase. These results provide insights into ECHIDNA-mediated secretory trafficking of cell wall and auxin carriers at the TGN, as well as its role in controlling plant growth.
Widespread adaptive evolution in angiosperm photosystems provides insight into the evolution of photosystem II repair
Authors: Robbins Elizabeth H J , Kelly Steven 
Published: October 2024

Abstract
Oxygenic photosynthesis generates the initial energy source that fuels nearly all life on Earth. At the heart of the process are the photosystems, which are pigment binding multiprotein complexes that catalyze the first step of photochemical conversion of light energy into chemical energy. Here, we investigate the molecular evolution of the plastid-encoded photosystem subunits at single-residue resolution across 773 angiosperm species. We show that despite an extremely high level of conservation, 7% of residues in the photosystems, spanning all photosystem subunits, exhibit hallmarks of adaptive evolution. Through in silico modeling of these adaptive substitutions, we uncover the impact of these changes on the predicted properties of the photosystems, focusing on their effects on cofactor binding and intersubunit interface formation. By analyzing these cohorts of changes, we reveal that evolution has repeatedly altered the interaction between Photosystem II and its D1 subunit in a manner that is predicted to reduce the energetic barrier for D1 turnover and photosystem repair. Together, these results provide insight into the trajectory of photosystem adaptation during angiosperm evolution.
The Tetratricopeptide repeat protein TaTPR-B1 regulates spike compactness in bread wheat
Authors: Zhu Jun , Huang Feng , Zhai Huijie , Zheng Yi , Yu Jiazheng , Chen Zhaoyan , Fan Yujie , Zhao Huanhuan , Sun Qixin , Liang Rongqi , Ni Zhongfu 
Published: October 2024

Abstract
Spike compactness (SC) is strongly associated with wheat (Triticum aestivum L.) grain yield. In this study, we conducted a quantitative trait locus (QTL) analysis using a doubled haploid (DH) population derived from a cross between two common wheat varieties with contrasting spike morphology, revealing 16 stable QTLs associated with SC. The effect of a major QTL, QSc.cau-6B.1, was validated in 231 F7 recombinant inbred lines (RILs) derived from the same cross as the DH population. Using two residual heterozygous lines (RHLs), we delimited QSc.cau-6B.1 to an approximately 0.5-Mbp physical interval containing four high-confidence genes. The tetratricopeptide repeat-TraesCS6B03G1214400 (TaTPR-B1) was the priority candidate gene according to sequence and expression variations between near-isogenic lines. Accordingly, TaTPR-B1 knockout in the common wheat variety ‘CB037’ significantly increased SC compared to the wild type (WT). Conversely, TaTPR-B1 overexpression in the common wheat variety ‘Fielder’ significantly decreased SC compared to the WT. Moreover, we developed a PCR-based marker targeting the 32-bp insertion/deletion (InDel) between the two TaTPR-B1 alleles, which could be practical and valuable in modern wheat breeding programs for diagnostic purposes. Collectively, these findings provide insight into the genetic basis of SC in common wheat and present a valuable target with a breeder-friendly diagnostic marker for gene pyramid breeding.
Morality and political economy from the vantage point of economics
Authors: Enke Benjamin 
Published: October 2024

Abstract
Political disagreement is increasingly moral, rather than economic, in nature, raising the question how the fields of political economy and moral psychology relate to each other. While these disciplines were initially deeply intertwined, cross-disciplinary exchange became rare throughout the 20th century. More recently, the tide has shifted again—social scientists of different backgrounds recognized that morality and politico-economic outcomes influence each other in rich bidirectional ways. Because psychologists and economists possess distinct and complementary skill sets, part of this movement consists of productive “economic imperialism”—economists leveraging their empirical toolkit to test and substantiate theories from moral psychology at scale or in the wild. To illustrate this, I present two case studies of recent economics research on prominent ideas in moral psychology. First is the theory that morality is ultimately functional—that it evolved as a form of “psychological and biological police” to enforce cooperation, such as in economic production and exchange. Second is that the structure of morality shapes political views and polarization, including on economic issues such as taxation and redistribution. I conclude from these case studies that economists have much to gain from integrating more ideas from moral psychology, and that moral psychologists will be able to make an even more compelling case if they engage with research in economics.
Why partisans feel hated: Distinct static and dynamic relationships with animosity meta-perceptions
Authors: Lees Jeffrey , Cikara Mina , Druckman James N 
Published: October 2024

Abstract
Partisans hold inaccurate perceptions of the other side. What drives these inaccuracies? We address this question with a focus on partisan animosity meta-perceptions (i.e. how much a partisan believes opposing partisans hate them). We argue that predictors can relate to meta-perceptions statically (e.g. at a specific point in time, do partisans who post more about politics on social media differ in their meta-perceptions relative to partisans who post less?) or dynamically (e.g. does a partisan who increases their social media political posting between two defined time points change their meta-perceptions accordingly?). Using panel data from the 2020 US presidential election, we find variables display distinct static and dynamic relationships with meta-perceptions. Notably, between individuals, posting online exhibits no (static) relationship with meta-perceptions, while within individuals, those who increased their postings over time (dynamically) became more accurate. The results make clear that overly general statements about meta-perceptions and their predictors, including social media activity, are bound to be wrong. How meta-perceptions relate to other factors often depends on contextual circumstances at a given time.
How rational inference about authority debunking can curtail, sustain, or spread belief polarization
Authors: Radkani Setayesh , Landau-Wells Marika , Saxe Rebecca 
Published: October 2024

Abstract
In polarized societies, divided subgroups of people have different perspectives on a range of topics. Aiming to reduce polarization, authorities may use debunking to lend support to one perspective over another. Debunking by authorities gives all observers shared information, which could reduce disagreement. In practice, however, debunking may have no effect or could even contribute to further polarization of beliefs. We developed a cognitively inspired model of observers’ rational inferences from an authority’s debunking. After observing each debunking attempt, simulated observers simultaneously update their beliefs about the perspective underlying the debunked claims and about the authority’s motives, using an intuitive causal model of the authority’s decision-making process. We varied the observers’ prior beliefs and uncertainty systematically. Simulations generated a range of outcomes, from belief convergence (less common) to persistent divergence (more common). In many simulations, observers who initially held shared beliefs about the authority later acquired polarized beliefs about the authority’s biases and commitment to truth. These polarized beliefs constrained the authority’s influence on new topics, making it possible for belief polarization to spread. We discuss the implications of the model with respect to beliefs about elections.
Attraction to politically extreme users on social media
Authors: Zimmerman Federico , Bailey David D , Muric Goran , Ferrara Emilio , Schöne Jonas , Willer Robb , Halperin Eran , Navajas Joaquín , Gross James J , Goldenberg Amit 
Published: October 2024

Abstract
Political segregation is a pressing issue, particularly on social media platforms. Recent research suggests that one driver of segregation is political acrophily—people's preference for others in their political group who have more extreme (rather than more moderate) political views. However, acrophily has been found in lab experiments, where people choose to interact with others based on little information. Furthermore, these studies have not examined whether acrophily is associated with animosity toward one's political out-group. Using a combination of a survey experiment (N = 388) and an analysis of the retweet network on Twitter (3,898,327 unique ties), we find evidence for users' tendency for acrophily in the context of social media. We observe that this tendency is more pronounced among conservatives on Twitter and that acrophily is associated with higher levels of out-group animosity. These findings provide important in- and out-of-the-lab evidence for understanding acrophily on social media.
Measuring norm pluralism and perceived polarization in US politics
Authors: Panizza Folco , Dimant Eugen , Kimbrough Erik O , Vostroknutov Alexander 
Published: October 2024

Abstract
Recent research has shown how norms shape political and economic decision-making. Much of this work assumes that a single norm influences the behavior of all people, but in fact, many situations are characterized by the existence of competing normative viewpoints. We apply a method for measuring belief in the simultaneous existence of multiple norms. Such multiplicity arises naturally when norms are associated with distinctive groups, and thus political polarization can be characterized, in part, as a product of diverging norms between groups. We thus assess the validity of our measurement technique by testing whether it can recover polarization on seven salient political issues on which US Democrats and Republicans tend to hold different views. We then compare the norms elicited by our method to the norms of Democrats and Republicans elicited in a separate sample using an established and validated—but methodologically less rich—measurement approach. Our study uncovers a wide range of co-existing views between and within political groups. Partisans understand their group’s norms and hold personal views that align with them. They can also recognize the diversity and polarization in US public opinion by identifying norms specific to political parties and acknowledging the variety of views within their own parties, which may indicate internal divisions. This research underscores the importance of nuanced approaches to political norms that go beyond party lines. By acknowledging a plurality of views, we can encourage productive discussions and bridge ideological divides.
Unraveling polarization: Insights into individual and collective dynamics
Authors: Kish Bar-On Kati , Dimant Eugen , Lelkes Yphtach , Rand David G 
Published: October 2024

Abstract
Polarization poses a critical threat to the stability of nations around the world, as it impacts climate change, populism, democracy, and global health. This perspective examines the conceptual understanding, measurement challenges, and potential interventions for polarization. Our analysis highlights the distinction and interactions between the individual and collective levels of polarization, conceptually, methodologically, and in terms of interventions. We conclude by pointing out future directions for understanding polarization and highlighting the interrelations between polarization and other social phenomena.
A potential evolutionary trap for the extended phenotype of a nematomorph parasite
Authors: Sawada Yuna , Sato Nozomu , Osawa Takeshi , Matsumoto Kazuma , Chiu Ming-Chung , Okada Ryuichi , Sakura Midori , Sato Takuya 
Published: October 2024

Abstract
Human activities introduce new environmental cues to wild organisms, leading to maladaptive behavioral and life history decisions known as the “evolutionary trap.” This trap is thought to be a major conservation concern for free-living organisms. However, it has never been studied in endosymbionts, one of the most successful and diverse life forms on Earth. Here, we examine this trap in the extended phenotype of a parasite that exploits the visual system of hosts to alter host behavior for its benefit. Arboreal mantids infected by nematomorph parasites are drawn to horizontally polarized light, thereby inducing them to enter the water. In this study, we found that the degree of linear polarization (DOP) of reflected light served as a reliable environmental cue for identifying perennial waters, where nematomorphs can survive in their aquatic life stage without drying out. Infected mantids exhibit attraction to horizontally polarized light with higher DOP in behavioral assays and jumped into pools reflecting light with higher DOP in field experiments. The asphalt road reflected horizontally polarized light closely resembling the polarization levels observed in perennial waters, likely leading to a higher prevalence of mantids on asphalt roads compared with those found in natural arboreal habitats. In a field experiment, we observed infected mantids walking on asphalt roads more often than on cement roads. These findings imply that evolutionary traps can endanger endosymbionts beyond their hosts that directly perceive environmental cues.