bluuebunny/crossref_metadata_2025_split huggingface dataset:
HBV/HCV dual infection impacts viral load, antibody response, and cytokine expression differently from HBV or HCV single infection
Authors: Chen Fei , Zhang Jian , Wen Bo , Luo Shan , Lin Yingbiao , Ou Wensheng , Guo Fengfan , Tang Ping , Liu Wenpei , Qu Xiaowang 
Published: December 2016

AbstractHepatitis B virus/hepatitis C virus (HBV/HCV) dual infection is common among high-risk individuals. To characterize the virological and immunological features of patients with HBV/HCV dual infection, we enrolled 1,049 individuals who have been identified as injection drug users. Patients were divided into single and dual infection groups according to the serological markers. We found the average HCV RNA level was significantly lower; however, HBV viral load was significantly higher in HBV/HCV dual-infected patients (n = 42) comparing HCV single infection (n = 340) or HBV single infection (n = 136). The level of anti-HBs in patients who experienced spontaneous HBV clearance was higher than that in HCV single-infected patients with HBV spontaneous clearance. The level of anti-HCV E2 in HBV/HCV dual infection was lower than that detected in HCV single infection. Serum levels of IL-6, IL-8, and TNF-α were significantly lower in HBV/HCV dual-infected patients than in patients infected with HBV or HCV alone. Taken together, two viral replications are imbalanced in dual infected patients. The anti-HBs and anti-HCV E2 antibody production were impaired and proinflammatory IL-6, IL-8, and TNF-α also downregulated due to dual infection. These findings will help further understanding the pathogenesis of HBV/HCV dual infection.
Pulsed photothermal interferometry for spectroscopic gas detection with hollow-core optical fibre
Authors: Lin Yuechuan , Jin Wei , Yang Fan , Ma Jun , Wang Chao , Ho Hoi Lut , Liu Yang 
Published: December 2016

AbstractGas detection with hollow-core photonic bandgap fibre (HC-PBF) and pulsed photothermal (PT) interferometry spectroscopy are studied theoretically and experimentally. A theoretical model is developed and used to compute the gas-absorption-induced temperature and phase modulation in a HC-PBF filled with low-concentration of C2H2 in nitrogen. The PT phase modulation dynamics for different pulse duration, peak power and energy of pump beam are numerically modelled, which are supported by the experimental results obtained around the P(9) absorption line of C2H2 at 1530.371 nm. Thermal conduction is identified as the main process responsible for the phase modulation dynamics. For a constant peak pump power level, the phase modulation is found to increase with pulse duration up to ~1.2 μs, while it increases with decreasing pulse duration for a constant pulse energy. It is theoretically possible to achieve ppb level detection of C2H2 with ~1 m length HC-PBF and a pump beam with ~10 ns pulse duration and ~100 nJ pulse energy.
Antibodies from multiple sclerosis patients preferentially recognize hyperglucosylated adhesin of non-typeable Haemophilus influenzae
Authors: Walvoort Marthe T. C. , Testa Chiara , Eilam Raya , Aharoni Rina , Nuti Francesca , Rossi Giada , Real-Fernandez Feliciana , Lanzillo Roberta , Brescia Morra Vincenzo , Lolli Francesco , Rovero Paolo , Imperiali Barbara , Papini Anna Maria 
Published: December 2016

AbstractIn autoimmune diseases, there have been proposals that exogenous “molecular triggers”, i.e., specific this should be ‘non-self antigens’ accompanying infectious agents, might disrupt control of the adaptive immune system resulting in serious pathologies. The etiology of the multiple sclerosis (MS) remains unclear. However, epidemiologic data suggest that exposure to infectious agents may be associated with increased MS risk and progression may be linked to exogenous, bacterially-derived, antigenic molecules, mimicking mammalian cell surface glycoconjugates triggering autoimmune responses. Previously, antibodies specific to a gluco-asparagine (N-Glc) glycopeptide, CSF114(N-Glc), were identified in sera of an MS patient subpopulation. Since the human glycoproteome repertoire lacks this uniquely modified amino acid, we turned our attention to bacteria, i.e., Haemophilus influenzae, expressing cell-surface adhesins including N-Glc, to establish a connection between H. influenzae infection and MS. We exploited the biosynthetic machinery from the opportunistic pathogen H. influenzae (and the homologous enzymes from A. pleuropneumoniae) to produce a unique set of defined glucosylated adhesin proteins. Interestingly we revealed that a hyperglucosylated protein domain, based on the cell-surface adhesin HMW1A, is preferentially recognized by antibodies from sera of an MS patient subpopulation. In conclusion the hyperglucosylated adhesin is the first example of an N-glucosylated native antigen that can be considered a relevant candidate for triggering pathogenic antibodies in MS.
Enhanced Locomotion Efficiency of a Bio-inspired Walking Robot using Contact Surfaces with Frictional Anisotropy
Authors: Manoonpong Poramate , Petersen Dennis , Kovalev Alexander , Wörgötter Florentin , Gorb Stanislav N. , Spinner Marlene , Heepe Lars 
Published: December 2016

AbstractBased on the principles of morphological computation, we propose a novel approach that exploits the interaction between a passive anisotropic scale-like material (e.g., shark skin) and a non-smooth substrate to enhance locomotion efficiency of a robot walking on inclines. Real robot experiments show that passive tribologically-enhanced surfaces of the robot belly or foot allow the robot to grip on specific surfaces and move effectively with reduced energy consumption. Supplementing the robot experiments, we investigated tribological properties of the shark skin as well as its mechanical stability. It shows high frictional anisotropy due to an array of sloped denticles. The orientation of the denticles to the underlying collagenous material also strongly influences their mechanical interlocking with the substrate. This study not only opens up a new way of achieving energy-efficient legged robot locomotion but also provides a better understanding of the functionalities and mechanical properties of anisotropic surfaces. That understanding will assist developing new types of material for other real-world applications.
Neural correlates of maintaining one’s political beliefs in the face of counterevidence
Authors: Kaplan Jonas T. , Gimbel Sarah I. , Harris Sam 
Published: December 2016

AbstractPeople often discount evidence that contradicts their firmly held beliefs. However, little is known about the neural mechanisms that govern this behavior. We used neuroimaging to investigate the neural systems involved in maintaining belief in the face of counterevidence, presenting 40 liberals with arguments that contradicted their strongly held political and non-political views. Challenges to political beliefs produced increased activity in the default mode network—a set of interconnected structures associated with self-representation and disengagement from the external world. Trials with greater belief resistance showed increased response in the dorsomedial prefrontal cortex and decreased activity in the orbitofrontal cortex. We also found that participants who changed their minds more showed less BOLD signal in the insula and the amygdala when evaluating counterevidence. These results highlight the role of emotion in belief-change resistance and offer insight into the neural systems involved in belief maintenance, motivated reasoning, and related phenomena.
Differential identity of Filopodia and Tunneling Nanotubes revealed by the opposite functions of actin regulatory complexes
Authors: Delage Elise , Cervantes Diégo Cordero , Pénard Esthel , Schmitt Christine , Syan Sylvie , Disanza Andrea , Scita Giorgio , Zurzolo Chiara 
Published: December 2016

AbstractTunneling Nanotubes (TNTs) are actin enriched filopodia-like protrusions that play a pivotal role in long-range intercellular communication. Different pathogens use TNT-like structures as “freeways” to propagate across cells. TNTs are also implicated in cancer and neurodegenerative diseases, making them promising therapeutic targets. Understanding the mechanism of their formation, and their relation with filopodia is of fundamental importance to uncover their physiological function, particularly since filopodia, differently from TNTs, are not able to mediate transfer of cargo between distant cells. Here we studied different regulatory complexes of actin, which play a role in the formation of both these structures. We demonstrate that the filopodia-promoting CDC42/IRSp53/VASP network negatively regulates TNT formation and impairs TNT-mediated intercellular vesicle transfer. Conversely, elevation of Eps8, an actin regulatory protein that inhibits the extension of filopodia in neurons, increases TNT formation. Notably, Eps8-mediated TNT induction requires Eps8 bundling but not its capping activity. Thus, despite their structural similarities, filopodia and TNTs form through distinct molecular mechanisms. Our results further suggest that a switch in the molecular composition in common actin regulatory complexes is critical in driving the formation of either type of membrane protrusion.
Beef and coal are key drivers of Australia’s high nitrogen footprint
Authors: Liang Xia , Leach Allison M. , Galloway James N. , Gu Baojing , Lam Shu Kee , Chen Deli 
Published: December 2016

AbstractAnthropogenic release of reactive nitrogen (Nr; all species of N except N2) to the global nitrogen (N) cycle is substantial and it negatively affects human and ecosystem health. A novel metric, the N footprint, provides a consumer-based perspective for Nr use efficiency and connects lifestyle choices with Nr losses. Here we report the first full-scale assessment of the anthropogenic Nr loss by Australians. Despite its ‘clean and green’ image, Australia has the largest N footprint (47 kg N cap−1 yr−1) both in food and energy sectors among all countries that have used the N-Calculator model. About 69% of the Australia’s N footprint is attributed to food consumption and the associated food production, with the rest from energy consumption. Beef consumption and production is the major contributor of the high food N footprint, while the heavy dependence on coal for electricity explains the large energy N footprint. Our study demonstrates opportunities for managing Nr loss and lifestyle choices to reduce the N footprint.
Revisiting the connection between Solar eruptions and primary headaches and migraines using Twitter
Authors: Milojević Staša 
Published: December 2016

AbstractMany internal and environmental triggers of primary headaches have been proposed, but establishing firm evidence for any of them has proved elusive. Geomagnetic storms, the disturbances of Earth’s magnetic field following Solar eruptions, have been proposed as one such trigger. In this study, we utilized a vast amount of self-reported symptoms from the online social networking service Twitter in order to investigate a purported link between the level of geomagnetic activity and the onset of primary headaches and migraines. We analyzed 63 million keyword-bearing messages posted over the three years covering the maximum of Solar Cycle 24. No correlation has been found despite the large sample size. The simulation reveals that the significant correlation would have emerged even if only 1% of headache (2% of migraine) instances were caused by geomagnetic disturbances, thus placing very low upper limits on the prevalence of this trigger among Twitter users.
Melatonin implantation improved the egg-laying rate and quality in hens past their peak egg-laying age
Authors: Jia Yaxiong , Yang Minghui , Zhu Kuanfeng , Wang Liang , Song Yukun , Wang Jing , Qin Wenxiang , Xu Zhiyuan , Chen Yu , Liu Guoshi 
Published: December 2016

AbstractThe egg-laying rates of hens approximately 470 days of age exhibited a positive correlation to blood melatonin levels. The hens with an egg-laying rate <30%, 30~90% and ≥90% had blood melatonin levels of 5.8 ± 2.6, 74.0 ± 32.9 and 445.9 ± 115.3 ng/ml, respectively. When 10 mg of melatonin was implanted into the hens at 300, 360, 470 and 550 days of age, the egg-laying rates increased 4.63 ± 0.46%, 8.38 ± 1.45%, 4.93 ± 0.85% and 7.93 ± 0.91%, respectively, compared to that of the controls. Melatonin implantation in hens at 300–470 days of age was observed to enhance egg production and reduce the rate of appearance of sharpei eggs. Melatonin (10 mg) implanted in hens 360 days of age did not influence the blood levels of progesterone (P4) or the gene expression levels of ovarian follicle stimulating hormone receptor (FSHR), luteinizing hormone receptor (LHR), oestradiol receptor alpha (ERα), superoxide dismutase 2 (SOD2) or melatonin receptor 1 (MT1). In contrast, melatonin significantly elevated the serum oestradiol-17β (E2) content, down-regulated the gene expression of gonadotropin-inhibitory hormone receptor (GnIHR), and enhanced the expression of melatonin receptor 2 (MT2). This result indicates that the improved egg-laying rate by melatonin was the result of increased serum oestradiol and decreased ovarian GnIHR. These alterations may be mediated by MT2 activation.
Sex Ratio Elasticity Influences the Selection of Sex Ratio Strategy
Authors: Wang Yaqiang , Wang Ruiwu , Li Yaotang , Ma Zhanshan 
Published: December 2016

AbstractThere are three sex ratio strategies (SRS) in nature—male-biased sex ratio, female-biased sex ratio and, equal sex ratio. It was R. A. Fisher who first explained why most species in nature display a sex ratio of ½. Consequent SRS theories such as Hamilton’s local mate competition (LMC) and Clark’s local resource competition (LRC) separately explained the observed deviations from the seemingly universal 1:1 ratio. However, to the best of our knowledge, there is not yet a unified theory that accounts for the mechanisms of the three SRS. Here, we introduce the price elasticity theory in economics to define sex ratio elasticity (SRE), and present an analytical model that derives three SRSs based on the following assumption: simultaneously existing competitions for both resources A and resources B influence the level of SRE in both sexes differently. Consequently, it is the difference (between two sexes) in the level of their sex ratio elasticity that leads to three different SRS. Our analytical results demonstrate that the elasticity-based model not only reveals a highly plausible mechanism that explains the evolution of SRS in nature, but also offers a novel framework for unifying two major classical theories (i.e., LMC & LRC) in the field of SRS research.
Experimental immunological demyelination enhances regeneration in autograft-repaired long peripheral nerve gaps
Authors: Ge Jun , Zhu Shu , Yang Yafeng , Liu Zhongyang , Hu Xueyu , Huang Liangliang , Quan Xin , Wang Meng , Huang Jinghui , Li Yunqing , Luo Zhuojing 
Published: December 2016

AbstractPeripheral nerve long gap defects are a clinical challenge in the regeneration field. Despite the wide variety of surgical techniques and therapies, autografting is the “gold standard” for peripheral nerve gap reconstruction. The pathological process of Wallerian degeneration from the time of acute injury to efficient regeneration requires several weeks. Regeneration time is critical for nerve reconstruction. Immunological demyelination induced by anti-galactocerebroside antibodies plus guinea pig complement was used to shorten the treatment time. Based on an antigen-antibody complex reaction, the demyelinating agent induced an acute and severe demyelination, leading to the pathological process of Wallerian degeneration during the demyelinating period. This method was used to treat a 12 mm-long sciatic nerve defect in rats. The control groups were injected with one of the demyelinating agent components. The results indicated that anti-galactocerebroside antibodies plus guinea pig complement can significantly shorten treatment time and promote nerve regeneration and functional recovery. In addition, the demyelinating agent can increase the mRNA levels of nerve growth factors and can regulate inflammation. In conclusion, treatment with anti-galactocerebroside antibodies plus guinea pig complement can promote axonal regeneration. This therapy provides a novel method to improve functional recovery in the treatment of long nerve defects.
Acylated and desacyl ghrelin are associated with hepatic lipogenesis, β-oxidation and autophagy: role in NAFLD amelioration after sleeve gastrectomy in obese rats
Authors: Ezquerro Silvia , Méndez-Giménez Leire , Becerril Sara , Moncada Rafael , Valentí Víctor , Catalán Victoria , Gómez-Ambrosi Javier , Frühbeck Gema , Rodríguez Amaia 
Published: December 2016

AbstractBariatric surgery improves non-alcoholic fatty liver disease (NAFLD). Our aim was to investigate the potential role of ghrelin isoforms in the resolution of hepatic steatosis after sleeve gastrectomy, a restrictive bariatric surgery procedure, in diet-induced obese rats. Male Wistar rats (n = 161) were subjected to surgical (sham operation and sleeve gastrectomy) or dietary interventions [fedad libituma normal (ND) or a high-fat (HFD) diet or pair-fed]. Obese rats developed hepatosteatosis and showed decreased circulating desacyl ghrelin without changes in acylated ghrelin. Sleeve gastrectomy induced a dramatic decrease of desacyl ghrelin, but increased the acylated/desacyl ghrelin ratio. Moreover, sleeve gastrectomy reduced hepatic triglyceride content and lipogenic enzymesMogat2andDgat1, increased mitochondrial DNA amount and induced AMPK-activated mitochondrial FFA β-oxidation and autophagy to a higher extent than caloric restriction. In primary rat hepatocytes, the incubation with both acylated and desacyl ghrelin (10, 100 and 1,000 pmol/L) significantly increased TG content, triggered AMPK-activated mitochondrial FFA β-oxidation and autophagy. Our data suggest that the decrease in the most abundant isoform, desacyl ghrelin, after sleeve gastrectomy contributes to the reduction of lipogenesis, whereas the increased relative acylated ghrelin levels activate factors involved in mitochondrial FFA β-oxidation and autophagy in obese rats, thereby ameliorating NAFLD.
Language Planning and Policy in Nepal
Authors: Sonntag Selma K. 
Published: December 2016

Abstract
The paper is an historical account of language planning and policy in Nepal, from the period of the first unification of Nepal in the 1700's up until the present day, with comments on possible future trends. Emphasis is placed on the period after 1951, when the Rana regime was first replaced by democratic experimentation and later by monarchal rule. The language policy of this post-1951 period is illustrated in the paper by co-ordinating government reports on the education system and development projects, newspaper articles, et cetera to the contemporary history of changes in government, of political party stands, and of Nepal's foreign policies. The author analyzes and comments on this co-ordination, demonstrating how language planning and policy formation is dependent on other political policies and events of the time. The two language policy controversies used as main examples in the paper are the Nepali-Hindi controversy, and to a lesser extent, the Nepali-Newari controversy. Explanations for the dominant role of these two controversies in an underdeveloped country with over forty languages are given.
Achieving Moral, High Quality, Affordable Medical Care in America through a True Free Market
Authors: McKalip David 
Published: December 2016

The basis of a just and moral economic model for health care is examined in the context of Catholic social teaching. The performance of the current model of “central economic planning” in medicine is evaluated in terms of the core principles of the social doctrine of the Catholic Church and compared to freedom-based economic models. It is clear that the best way to respect and serve human dignity, the common good, subsidiarity, and solidarity in medicine is through the establishment of a true, free-market health economy. Lay Summary: This article reviews the impact of recent healthcare reforms as well as traditional “third party payment” models for healthcare financing in America (insurance). Impact on patients and doctors are evaluated in the context of Catholic social doctrine and the Catechism. The many shortcomings and negative consequences of an economy planned centrally by government are compared to the benefits of a true free-market medical economy with empowered individuals. The analysis shows that interference in the patient–physician relationship and the centrally planned medical economy itself violates Catholic teachings, harms patients and doctors, and create morally evil outcomes and economic structures.
Unusual rainbows as auroral candidates: Another point of view
Authors: Carrasco Víctor M. S. , Trigo Ricardo M. , Vaquero José M. 
Published: December 2016

Abstract
Several auroral events that occurred in the past have not been cataloged as such due to the fact that they were described in the historical sources with different terminologies. Hayakawa et al. (2016, PASJ, 68, 33) have reviewed historical Oriental chronicles and proposed the terms “unusual rainbow” and “white rainbow” as candidates for auroras. In this work, we present three events that took place in the 18th century in two different settings (the Iberian Peninsula and Brazil) that were originally described with similar definitions or wording to that used by the Oriental chronicles, despite the inherent differences in terms associated with Oriental and Latin languages. We show that these terms are indeed applicable to the three case studies from Europe and South America. Thus, the auroral catalogs available can be extended to Occidental sources using this new terminology.
Efficient Bayesian Species Tree Inference under the Multispecies Coalescent
Authors: Rannala Bruce , Yang Ziheng 
Published: December 2016

Abstract
We develop a Bayesian method for inferring the species phylogeny under the multispecies coalescent (MSC) model. To improve the mixing properties of the Markov chain Monte Carlo (MCMC) algorithm that traverses the space of species trees, we implement two efficient MCMC proposals: the first is based on the Subtree Pruning and Regrafting (SPR) algorithm and the second is based on a node-slider algorithm. Like the Nearest-Neighbor Interchange (NNI) algorithm we implemented previously, both new algorithms propose changes to the species tree, while simultaneously altering the gene trees at multiple genetic loci to automatically avoid conflicts with the newly proposed species tree. The method integrates over gene trees, naturally taking account of the uncertainty of gene tree topology and branch lengths given the sequence data. A simulation study was performed to examine the statistical properties of the new method. The method was found to show excellent statistical performance, inferring the correct species tree with near certainty when 10 loci were included in the dataset. The prior on species trees has some impact, particularly for small numbers of loci. We analyzed several previously published datasets (both real and simulated) for rattlesnakes and Philippine shrews, in comparison with alternative methods. The results suggest that the Bayesian coalescent-based method is statistically more efficient than heuristic methods based on summary statistics, and that our implementation is computationally more efficient than alternative full-likelihood methods under the MSC. Parameter estimates for the rattlesnake data suggest drastically different evolutionary dynamics between the nuclear and mitochondrial loci, even though they support largely consistent species trees. We discuss the different challenges facing the marginal likelihood calculation and transmodel MCMC as alternative strategies for estimating posterior probabilities for species trees. [Bayes factor; Bayesian inference; MCMC; multispecies coalescent; nodeslider; species tree; SPR.]