bluuebunny/crossref_metadata_2025_split huggingface dataset:
Visual adaptation alters the apparent speed of real-world actions
Authors: Mather George , Sharman Rebecca J. , Parsons Todd 
Published: July 2017

AbstractThe apparent physical speed of an object in the field of view remains constant despite variations in retinal velocity due to viewing conditions (velocity constancy). For example, people and cars appear to move across the field of view at the same objective speed regardless of distance. In this study a series of experiments investigated the visual processes underpinning judgements of objective speed using an adaptation paradigm and video recordings of natural human locomotion. Viewing a video played in slow-motion for 30 seconds caused participants to perceive subsequently viewed clips played at standard speed as too fast, so playback had to be slowed down in order for it to appear natural; conversely after viewing fast-forward videos for 30 seconds, playback had to be speeded up in order to appear natural. The perceived speed of locomotion shifted towards the speed depicted in the adapting video (‘re-normalisation’). Results were qualitatively different from those obtained in previously reported studies of retinal velocity adaptation. Adapting videos that were scrambled to remove recognizable human figures or coherent motion caused significant, though smaller shifts in apparent locomotion speed, indicating that both low-level and high-level visual properties of the adapting stimulus contributed to the changes in apparent speed.
A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis
Authors: Fouhy F. , Ronan N. J. , O’Sullivan O. , McCarthy Y. , Walsh A. M. , Murphy D. M. , Daly M. , Flanagan E. T. , Fleming C. , McCarthy M. , Shortt C. , Eustace J. A. , Shanahan F. , Rea M. C. , Ross R. P. , Stanton C. , Plant B. J. 
Published: July 2017

AbstractCystic Fibrosis (CF) and its treatment result in an altered gut microbiota composition compared to non-CF controls. However, the impact of this on gut microbiota functionality has not been extensively characterised. Our aim was to conduct a proof-of-principle study to investigate if measurable changes in gut microbiota functionality occur in adult CF patients compared to controls. Metagenomic DNA was extracted from faecal samples from six CF patients and six non-CF controls and shotgun metagenomic sequencing was performed on the MiSeq platform. Metabolomic analysis using gas chromatography-mass spectrometry was conducted on faecal water. The gut microbiota of the CF group was significantly different compared to the non-CF controls, with significantly increased Firmicutes and decreased Bacteroidetes. Functionality was altered, with higher pathway abundances and gene families involved in lipid (e.g. PWY 6284 unsaturated fatty acid biosynthesis (p = 0.016)) and xenobiotic metabolism (e.g. PWY-5430 meta-cleavage pathway of aromatic compounds (p = 0.004)) in CF patients compared to the controls. Significant differences in metabolites occurred between the two groups. This proof-of-principle study demonstrates that measurable changes in gut microbiota functionality occur in CF patients compared to controls. Larger studies are thus needed to interrogate this further.
Establishment of patient derived xenografts as functional testing of lung cancer aggressiveness
Authors: Moro Massimo , Bertolini Giulia , Caserini Roberto , Borzi Cristina , Boeri Mattia , Fabbri Alessandra , Leone Giorgia , Gasparini Patrizia , Galeone Carlotta , Pelosi Giuseppe , Roz Luca , Sozzi Gabriella , Pastorino Ugo 
Published: July 2017

AbstractDespite many years of research efforts, lung cancer still remains the leading cause of cancer deaths worldwide. Objective of this study was to set up a platform of non-small cell lung cancer patient derived xenografts (PDXs) faithfully representing primary tumour characteristics and offering a unique tool for studying effectiveness of therapies at a preclinical level. We established 38 PDXs with a successful take rate of 39.2%. All models closely mirrored parental tumour characteristics although a selective pressure for solid patterns, vimentin expression and EMT was observed in several models. An increased grafting rate for tumours derived from patients with worse outcome (p = 0.006), higher stage (p = 0.038) and higher CD133+/CXCR4+/EpCAM− stem cell content (p = 0.019) was observed whereas a trend towards an association with SUVmax higher than 8 (p = 0.084) was detected. Kaplan Meier analyses showed a significantly worse (p = 0.0008) overall survival at 5 years in patients with grafted vs not grafted PDXs also after adjusting for tumour stage. Moreover, for 63.2% models, grafting was reached before clinical recurrence occurred. Our findings strengthen the relevance of PDXs as useful preclinical models closely reflecting parental patients tumours and highlight PDXs establishment as a functional testing of lung cancer aggressiveness and personalized therapies.
High-performance nanoscale topological energy transduction
Authors: Philip Timothy M. , Gilbert Matthew J. 
Published: July 2017

AbstractThe realization of high-performance, small-footprint, on-chip inductors remains a challenge in radio-frequency and power microelectronics, where they perform vital energy transduction in filters and power converters. Modern planar inductors consist of metallic spirals that consume significant chip area, resulting in low inductance densities. We present a novel method for magnetic energy transduction that utilizes ferromagnetic islands (FIs) on the surface of a 3D time-reversal-invariant topological insulator (TI) to produce paradigmatically different inductors. Depending on the chemical potential, the FIs induce either an anomalous or quantum anomalous Hall effect in the topological surface states. These Hall effects direct current around the FIs, concentrating magnetic flux and producing a highly inductive device. Using a novel self-consistent simulation that couples AC non-equilibrium Green functions to fully electrodynamic solutions of Maxwell’s equations, we demonstrate excellent inductance densities up to terahertz frequencies, thus harnessing the unique properties of topological materials for practical device applications.
Rapid ILs-polishing Processes Toward Flexible Nanostructured Paper with Dually High Transparency and Haze
Authors: Ou Yanghao , Chen Jinbo , Lu Pengbo , Cheng Fan , Lin Meiyan , Su Lingfeng , Li Jun , Liu Detao 
Published: July 2017

AbstractBiodegradable highly nanostructured paper has received great interest in past years due to its excellent optical properties which facilitate its wide applications in green flexible electronics and devices. However, energy and/or time-consuming procedure during the process of fabricating most nanostructured transparent paper are presently the main obstacle to their scalable production. In this work, we demonstrated a novel nanostructured paper with dually high transparency (∼91%) and high haze (∼89%) that was directly fabricated from original paper with rapid ILs-polishing processes. The whole fabricating time only requires 10 min. Compared to the previously reported nanopaper made of the isolated cellulose nanofibers by pure mechanical and/or chemical approaches, this work presented herein is devoted to use green ILs to polish directly the micrometer-sized fibrous paper into the nanostructured paper. This new method brings a rapid fabrication of transparent nanostructured paper while also retaining dual intriguing properties both in optical transmittance and haze. This work is capable of fabricating next-generation flexible and highly transparent and haze paper by a high-speed roll-to-roll manufacturing process with a much lower cost.
A deletion affecting an LRR-RLK gene co-segregates with the fruit flat shape trait in peach
Authors: López-Girona Elena , Zhang Yu , Eduardo Iban , Mora José Ramón Hernández , Alexiou Konstantinos G. , Arús Pere , Aranzana María José 
Published: July 2017

AbstractIn peach, the flat phenotype is caused by a partially dominant allele in heterozygosis (Ss), fruits from homozygous trees (SS) abort a few weeks after fruit setting. Previous research has identified a SSR marker (UDP98–412) highly associated with the trait, found suitable for marker assisted selection (MAS). Here we report a ∼10 Kb deletion affecting the gene PRUPE.6G281100, 400 Kb upstream of UDP98-412, co-segregating with the trait. This gene is a leucine-rich repeat receptor-like kinase (LRR-RLK) orthologous to the Brassinosteroid insensitive 1-associated receptor kinase 1 (BAK1) group. PCR markers suitable for MAS confirmed its strong association with the trait in a collection of 246 cultivars. They were used to evaluate the DNA from a round fruit derived from a somatic mutation of the flat variety ‘UFO-4’, revealing that the mutation affected the flat associated allele (S). Protein BLAST alignment identified significant hits with genes involved in different biological processes. Best protein hit occurred with AtRLP12, which may functionally complement CLAVATA2, a key regulator that controls the stem cell population size. RT-PCR analysis revealed the absence of transcription of the partially deleted allele. The data support PRUPE.6G281100 as a candidate gene for flat shape in peach.
Controlling bi-anisotropy in infrared metamaterials using three-dimensional split-ring-resonators for purely magnetic resonance
Authors: Moritake Yuto , Tanaka Takuo 
Published: July 2017

AbstractWe propose and demonstrate the strategy to control bi-anisotropic response in three-dimensional split-ring-resonators (3D-SRRs) array for purely magnetic resonance in the mid-infrared region. By using a metal-stress-driven self-folding method, inversion symmetry along a propagation axis of 3D-SRRs was controlled. The inversion symmetry of 3D-SRRs realized non-bi-anisotropic response of a magnetic resonant mode at around 10 μm in wavelength resulting in purely magnetic resonance with high transmission of 70%. Highly transparent purely magnetic artificial elements demonstrated in this study will be a key component for functional applications using artificial magnetism at the optical frequencies.
A First Phylogeny of the Genus Dimocarpus and Suggestions for Revision of Some Taxa Based on Molecular and Morphological Evidence
Authors: Lithanatudom Suparat K. , Chaowasku Tanawat , Nantarat Nattawadee , Jaroenkit Theeranuch , Smith Duncan R. , Lithanatudom Pathrapol 
Published: July 2017

AbstractDimocarpus longan, commonly known as the longan, belongs to the family Sapindaceae, and is one of the most economically important fruits commonly cultivated in several regions in Asia. There are various cultivars of longan throughout the Thai-Malay peninsula region, but until now no phylogenetic analysis has been undertaken to determine the genetic relatedness of these cultivars. To address this issue, 6 loci, namely ITS2, matK, rbcL, trnH-psbA, trnL-I and trnL-trnF were amplified and sequenced from 40 individuals consisting of 26 longan cultivars 2 types of lychee and 8 herbarium samples. The sequencing results were used to construct a phylogenetic tree using the neighbor-joining (NJ), maximum likelihood (ML) and Bayesian inference (BI) criteria. The tree showed cryptic groups of D. longan from the Thailand-Malaysia region (Dimocarpus longan spp.). This is the first report of the genetic relationship of Dimocarpus based on multi-locus molecular markers and morphological characteristics. Multiple sequence alignments, phylogenetic trees and species delimitation support that Dimocarpus longan spp. longan var. obtusus and Dimocarpus longan spp. malesianus var. malesianus should be placed into a higher order and are two additional species in the genus Dimocarpus. Therefore these two species require nomenclatural changes as Dimocarpus malesianus and Dimocarpus obtusus, respectively.
Evolution, expression and association of the chemosensory protein genes with the outbreak phase of the two main pest locusts
Authors: Martín-Blázquez R. , Chen B. , Kang L. , Bakkali M. 
Published: July 2017

AbstractWe analyze the evolutionary relationships and expression patterns of the large set of genes for chemosensory proteins (CSPs) in the two main pest locusts. We used the available transcriptome and genome data to infer the number of genes using BLAST searches and sequence similarity matrices. Maximum likelihood phylogenies revealed the relationships between these CSPs and CSPs from several arthropods. RNAseq and qPCR allowed associating CSPs to locust phases. Crossing the phylogenetic and expression data allowed us to deduce homologies and conservation of the involvement in the phase change. We confirm that Locusta migratoria has at least 58 CSP gene copies, only five of which lack evidence of expression, and we reveal that Schistocerca gregaria has at least 42 expressed CSP genes. Both species share 21 orthologs, whereas 33 L. migratoria and 15 S. gregaria CSPs seem species-specific. Additional six S. gregaria and four L. migratoria CSPs seem duplications. Although the expression profiles are not especially conserved, seven orthologous CSP pairs share a gregarious over-expression pattern in adult locusts. We thus confirm that the number of locusts’ CSPs is large, due to gene duplications during the evolution of Orthoptera, we establish sequence and potential functional homologies, and we highlight specific CSPs that appear to be involved in locust gregariousness either in general or in a species-specific manner.
Evidence for a role of TRIB3 in the regulation of megakaryocytopoiesis
Authors: Butcher Lee , Ahluwalia Maninder , Örd Tiit , Johnston Jessica , Morris Roger H. , Kiss-Toth Endre , Örd Tõnis , Erusalimsky Jorge D. 
Published: July 2017

AbstractMegakaryocytopoiesis is a complex differentiation process driven by the hormone thrombopoietin by which haematopoietic progenitor cells give rise to megakaryocytes, the giant bone marrow cells that in turn break down to form blood platelets. The Tribbles Pseudokinase 3 gene (TRIB3) encodes a pleiotropic protein increasingly implicated in the regulation of cellular differentiation programmes. Previous studies have hinted that TRIB3 could be also involved in megakaryocytopoiesis but its role in this process has so far not been investigated. Using cellular model systems of haematopoietic lineage differentiation here we demonstrate that TRIB3 is a negative modulator of megakaryocytopoiesis. We found that in primary cultures derived from human haematopoietic progenitor cells, thrombopoietin-induced megakaryocytic differentiation led to a time and dose-dependent decrease in TRIB3 mRNA levels. In the haematopoietic cell line UT7/mpl, silencing of TRIB3 increased basal and thrombopoietin-stimulated megakaryocyte antigen expression, as well as basal levels of ERK1/2 phosphorylation. In primary haematopoietic cell cultures, silencing of TRIB3 facilitated megakaryocyte differentiation. In contrast, over-expression of TRIB3 in these cells inhibited the differentiation process. The in-vitro identification of TRIB3 as a negative regulator of megakaryocytopoiesis suggests that in-vivo this gene could be important for the regulation of platelet production.
Construction of porous CuCo2S4 nanorod arrays via anion exchange for high-performance asymmetric supercapacitor
Authors: Cheng Siyi , Shi Tielin , Chen Chen , Zhong Yan , Huang Yuanyuan , Tao Xiangxu , Li Junjie , Liao Guanglan , Tang Zirong 
Published: July 2017

AbstractTo push the energy density limit of supercapacitors, proper pseudocapacitive materials with favorable nanostructures are urgently pursued. Ternary transition metal sulfides are promising electrode materials due to the better conductivity and higher electrochemical activity in comparison to the single element sulfides and transition metal oxides. In this work, we have successfully synthesized porous CuCo2S4 nanorod array (NRAs) on carbon textile through a stepwise hydrothermal method, including the growth of the Cu-Co precursor nanowire arrays and subsequent conversion into CuCo2S4 NRAs via anion exchange reaction. The CuCo2S4 NRAs electrode exhibits a greatly enhanced specific capacitance and an outstanding cycling stability. Moreover, an asymmetric supercapacitor using the CuCo2S4 NRAs as positive electrode and activated carbon as negative electrode delivers a high energy density of 56.96 W h kg−1. Such superior performance demonstrate that the CuCo2S4 NRAs are promising materials for future energy storage applications.
Si Wire Supported MnO2/Al/Fluorocarbon 3D Core/Shell Nanoenergetic Arrays with Long-Term Storage Stability
Authors: Zhu Ying , Zhou Xiang , Wu Chun , Cheng Hua , Lu Zhouguang , Zhang Kaili 
Published: July 2017

AbstractThree-dimensional MnO2/Al/fluorocarbon core/shell nanoenergetic arrays are prepared on silicon substrate that is with silicon wires on top. Silicon wires are first prepared as the scaffolds by maskless deep reactive ion etching of silicon wafer, which is followed by the hydrothermal growth of MnO2. Al and fluorocarbon are then deposited sequentially around the silicon wire (Si-W) supported MnO2 arrays by magnetron sputtering to realize the core/shell nanoenergetic composite. Several characterization techniques are used to investigate the prepared Si-W/MnO2/Al/fluorocarbon arrays, including the scanning electron microscopy, transmission electron microscopy, energy dispersive spectroscopy, X-ray photoelectron spectroscopy, and thermal analysis. 3D upright aligned core/shell structure with an intimate contact between MnO2 and Al is confirmed from the morphological characterization. Superhydrophobicity is achieved after the fluorocarbon coating. Most importantly, the Si-W/MnO2/Al/fluorocarbon nanoenergetic arrays show no decay of energy density after 9 months of storage, indicating potential applications in nanoenergetics-on-a-chip when long-term storage is needed.
Lower mean platelet volume predicts poor prognosis in renal cell carcinoma
Authors: Yun Zhi-yuan , Zhang Xin , Liu Yan-song , Liu Tiemin , Liu Zhi-ping , Wang Rui-tao , Yu Kai-jiang 
Published: July 2017

AbstractAltered mean platelet volume (MPV) is found in several malignancies. Remarkably, there is little consensus on using the value of MPV in the prognostic evaluations of renal cell carcinoma (RCC). The aim of this study is to examine the feasibility of MPV value as a prognostic indicator of RCC. The retrospective study recruited 306 consecutive RCC patients between January 2009 and December 2009. The relationships between MPV and clinicopathological characteristics were analyzed. Kaplan-Meier method and Cox regression were used to evaluate the prognostic impact of MPV. Of the 306 RCC patients, low MPV levels were detected in 61 (19.9%) patients. Reduced MPV was associated with histology types, T classification, UCLA Integrated Scoring System (UISS) category, and Mayo clinic stage, size, grade, and necrosis score (SSIGN) category (P < 0.05). Patients with decreased MPV had significantly shorter survival time than patients with normal MPV (P < 0.001). Cox regression analysis revealed that reduced MPV was an independent prognostic factor for overall survival (hazard ratio, 1.758; 95% confidence interval [CI], 1.083–2.855, P = 0.023). Moreover, the prognostic accuracy of TNM stage, UISS, and SSIGN prognostic models were improved when MPV was added. In conclusion, reduced MPV is identified as an independent predictor of adverse clinical outcome in RCC.
Increased functional connectivity after stroke correlates with behavioral scores in non-human primate model
Authors: Hernandez-Castillo Carlos R. , Nashed Joseph Y. , Fernandez-Ruiz Juan , Wang Justin , Gallivan Jason , Cook Douglas J. 
Published: July 2017

AbstractHere we characterized the functional connectivity (FC) changes occurring after a controlled MCA stroke in a primate model. We hypothesize that if FC can inform about the neural changes after a stroke in the non-human primate (NHP) stroke model, then significant FC changes after the stroke would have to correlate with the remaining behavioral capacities. Eleven cynomolgus monkeys underwent an experimental middle cerebral artery occlusion while five monkeys remained as the control group. One month later the neurological function was assessed with a set of fine motor tasks and the Nonhuman Primate Stroke Scale (NHPSS). Structural and functional connectivity analyses were done to compare both groups. Three FC changes showed significant behavioral correlations: right sensorimotor-right lateral intraparietal FC with the six-well task; left posterior intraparietal-left dorsal premotor FC with the hill task; and right visual-left primary motor FC with the NHPSS. In the three instances, stronger FC correlated with better behavioral outcome. The results show that the functional changes correlating with behavioral outcomes involved sensorimotor cortices that were not restricted to the affected hemisphere. These results show that the FC analysis in NHP stroke model is a relevant methodology suitable to inform the neural changes occurring after a stroke.
Large nonlinear dielectric behavior in BaTi1−xSnxO3
Authors: Ren Pengrong , Liu Zicheng , Wang Qian , Peng Biaolin , Ke Shanming , Fan Huiqing , Zhao Gaoyang 
Published: July 2017

AbstractBaTi1−xSnxO3 (BTSn, 0 ≤ x ≤ 0.30) ceramics were prepared by both the conventional sintering (CS) and sparking plasma sintering (SPS). Composition, temperature and grain size dependences of the nonlinear dielectric behaviors were systematically studied. BTSn was found to have especially large tunability (≥90%), which is larger than most other Pb-free systems, and is comparable to Pb-based relaxors. The high dielectric tunability in BTSn is attributed to its specific domain structures. Besides, temperature dependent tunability of BTSn presents a dispersed behavior and the dispersion is enhanced with the increase of Sn4+ concentrations, which is explained by the compositional fluctuation model.
Model‐driven real‐time control coordination for distribution grids with medium‐scale photovoltaic generation
Authors: Krata Jaroslaw , Saha Tapan Kumar , Yan Ruifeng 
Published: July 2017

Increasing penetration of photovoltaic (PV) generation may significantly impact existing voltage regulation schemes. In particular, the lack of coordination between control devices and fast change in PV generation can cause voltage magnitude to go beyond limits. This study addresses the issue by providing a novel real‐time centralised voltage control algorithm to tackle voltage fluctuations caused by variability of PV power generation. The new method considers autonomous response of upstream voltage regulation devices and provides optimised set‐points for the chosen downstream controllers. Furthermore, the investigated method was tested in the real‐time digital simulator on a model of 11 kV grid located in a semi‐rural area of Queensland, Australia. The control algorithm was designed in MATLAB with a multidimensional, non‐linear, mixed‐integer optimisation. The parallel computing implementation of the KNITRO optimiser helped to provide quicker and more accurate response than the existing uncoordinated control schemes. As a result, optimised control coordination leads to a substantial reduction in voltage fluctuations and decrease in regulation time. Moreover, the proposed method detects and eliminates unnecessary control operations. Thus, it can also prevent voltage hunting in distribution networks.
Convergent Routes to Pyrroles Exploiting the Unusual Radical Chemistry of Xanthates – An Overview
Authors: Quiclet-Sire Béatrice , Zard Samir 
Published: July 2017

Convergent routes to a variety of pyrroles involving radical additions of xanthates are described. Emphasis is placed on reactions leading to the formation of 1,4-diketones or 1,4-ketoaldehydes or their synthetic equivalents, which can then be condensed with ammonia or primary amines in a variation of the classical Paal–Knorr synthesis of pyrroles. The modification of pyrroles by direct radical addition is also discussed.1	Introduction2	Earlier Routes to Pyrroles3	The Xanthate Radical Addition–Transfer Process4	Application to Pyrrole Synthesis5	Further Variations6	Direct Modification of Existing Pyrrole Rings7	Outlook and Perspectives