bluuebunny/crossref_metadata_2025_split huggingface dataset:
Overweight, obesity and foot posture in children: A cross‐sectional study
Authors: Gijon‐Nogueron Gabriel , Montes‐Alguacil Jesus , Martinez‐Nova Alfonso , Alfageme‐Garcia Pilar , Cervera‐Marin Jose A , Morales‐Asencio Jose M 
Published: September 2016

AimThe aim of this study is to examine the relationship between obesity and foot posture in children.MethodsThis cross‐sectional study is based on a sample population of 1798 schoolchildren (873 boys and 925 girls) aged between 6 and 12 years. The height and weight of each subject was measured and the body mass index (BMI) was calculated. Foot posture was described by means of the foot posture index (FPI). The differences among various foot postures in relation to BMI, for the total sample, were tested using the Games‐Howell test. In addition, cross tabulation for different gender groups and BMI categories was applied and tested using χ2.ResultsThe mean BMI was 18.94 (standard deviation (SD) 3.65 kg/m2) in the boys and 18.90 (SD 3.64 kg/m2) in the girls, and the FPI was 3.97 (SD 2.98) in the boys and 3.68 (SD 2.86) in the girls. The FPI results show that among the boys aged 6 years, the right foot was more pronated than among the girls (FPI 4.8–4.1, P = 0.034), while among the boys aged 7 years, this was true for the left foot (4.4–3.7, P = 0.049). For the other ages, there were no significant differences in the FPI between the sexes. There were no significant differences between the value, or categories, of BMI and the FPI in the different age groups.ConclusionIn children aged between 6 and 12 years, body mass does not appear to have an important bearing on static foot posture. Furthermore, the variables gender and age are of scant importance in determining foot posture in children.
No detectable resistance to tenofovir disoproxil fumarate in HBeAg+ and HBeAg− patients with chronic hepatitis B after 8 years of treatment
Authors: Liu Y. , Corsa A. C. , Buti M. , Cathcart A. L. , Flaherty J. F. , Miller M. D. , Kitrinos K. M. , Marcellin P. , Gane E. J. 
Published: September 2016

SummaryA major hurdle in the long‐term treatment of chronic hepatitis B (CHB) patients is to maintain viral suppression in the absence of drug resistance. To date, no evidence of resistance to tenofovir disoproxil fumarate (TDF) has been observed. A cumulative evaluation of CHB patients who qualified for resistance surveillance over 8 years of TDF treatment was conducted. Patients in studies GS‐US‐174‐0102 (HBeAg−) and GS‐US‐174‐0103 (HBeAg+) were randomized 2:1 to receive TDF or adefovir dipivoxil (ADV) for 48 weeks followed by open‐label TDF through year 8. Population sequencing of HBV pol/RT was attempted for all TDF‐treated patients at baseline and, annually if viremic, at discontinuation, or with addition of emtricitabine. Overall, 88/641 (13.7%) patients qualified for sequence analysis at one or more time points. The percentage of patients qualifying for sequence analysis declined over time, from 9 to 11% in years 1‐2 to <4% over years 3‐8. Forty‐one episodes of virologic breakthrough (VB) occurred throughout the study, with most (n=29, 70%) associated with nonadherence to study medication. Fifty‐nine per cent of VB patients with an opportunity to resuppress HBV achieved HBV DNA resuppression. A minority of patients who qualified for sequencing had polymorphic (41/165, 24.8%) or conserved (17/165, 10.3%) site changes in pol/RT, with six patients developing lamivudine and/or ADV resistance‐associated mutations. No accumulation of conserved site changes was detected. The long‐term treatment of CHB with TDF monotherapy maintains effective suppression of HBV DNA through 8 years, with no evidence of TDF resistance or accumulation of conserved site changes.
Formulation of an Alternative Culture Medium for Arthrospira maxima (Spirulina) Based on “Tequesquite,” a Traditional Mineral Resource
Authors: Martínez‐Jerónimo Fernando , Flores‐Hernández Dante Ivo , Galindez‐Mayer Juvencio 
Published: September 2016

AbstractCulture media formulation for Arthrospira maxima (formerly designated as Spirulina maxima) production is a constraining factor. Use of synthetic media could be expensive because most of the commercial strains require salinity conditions higher than 20 g/L. In this study, a traditional, pre‐Hispanic mineral resource, known as “tequesquite,” was used as the base for the formulation of an alternative and low‐cost culture medium. Tequesquite is available from outcrop areas located in the basin of the former Lake Texcoco, where A. maxima thrived in pre‐Hispanic times. The effect on the biomass production of different tequesquite‐based formulations, varying N, P, and , was tested and compared with results obtained with Zarrouk's medium (ZM). Growth of biomass in some alternative formulations showed no significant differences compared with ZM. Production in a bubble‐column photobioreactor of the alternative medium reached a maximum of X = 2570.4 mg/L dry weight, compared with X = 2931.4 mg/L dry weight obtained with ZM. The proposed tequesquite‐medium formulation has equivalent N and P concentrations as ZM, but only 50% of NaHCO3, thus reducing the medium's cost. In addition, it avoids the use of seawater or NaCl to provide the salinity condition required for the adequate growth of Arthrospira.
Buzz off! An evaluation of ultrasonic acoustic vibration for the disruption of marine micro-organisms on sensor-housing materials
Authors: McQuillan J.S. , Hopper D.J. , Magiopoulos I. , Arundell M. , Brown R. , Shorter S. , Mowlem M.C. , Pascal R.W. , Connelly D. 
Published: September 2016

Abstract
Biofouling is a process of ecological succession which begins with the attachment and colonization of micro-organisms to a submerged surface. For marine sensors and their housings, biofouling can be one of the principle limitations to long-term deployment and reliability. Conventional antibiofouling strategies using biocides can be hazardous to the environment, and therefore alternative chemical-free methods are preferred. In this study, custom-made testing assemblies were used to evaluate ultrasonic vibration as an antibiofouling process for marine sensor-housing materials over a 28-day time course. Microbial biofouling was measured based on (i) surface coverage, using fluorescence microscopy and (ii) bacterial 16S rDNA gene copies, using Quantitative polymerase chain reaction (PCR). Ultrasonic vibrations (20 KHz, 200 ms pulses at 2-s intervals; total power 16·08 W) significantly reduced the surface coverage on two plastics, poly(methyl methacrylate) and polyvinyl chloride (PVC) for up to 28 days. Bacterial gene copy number was similarly reduced, but the results were only statistically significant for PVC, which displayed the greatest overall resistance to biofouling, regardless of whether ultrasonic vibration was applied. Copper sheet, which has intrinsic biocidal properties was resistant to biofouling during the early stages of the experiment, but inhibited measurements made by PCR and generated inconsistent results later on.

Significance and Impact of the Study
In this study, ultrasonic acoustic vibration is presented as a chemical-free, ecologically friendly alternative to conventional methods for the perturbation of microbial attachment to submerged surfaces. The results indicate the potential of an ultrasonic antibiofouling method for the disruption of microbial biofilms on marine sensor housings, which is typically a principle limiting factor in their long-term operation in the oceans. With increasing deployment of scientific apparatus in aquatic environments, including further offshore and for longer duration, the identification and evaluation of novel antifouling strategies that do not employ hazardous chemicals are widely sought.
Assessment of the distribution of sponge chips in the sediment of East Pacific Ocean reefs
Authors: Carballo Jose Luis , Ovalle‐Beltrán Humberto , Yáñez Benjamin , Bautista‐Guerrero Eric , Nava‐Bravo Héctor 
Published: September 2016

AbstractSponges are one of the principal agents of bioerosion and sediment production in coral reefs. They generate small carbonate chips that can be found in the sediments, and we investigated whether these could provide a means for assessment of bioerosion applicable to reef monitoring. We tested this hypothesis on samples from 12 Mexican coral reefs distributed along the Pacific coast, where boring sponges were particularly abundant, and quantified the amount of chips in samples of superficial sediment in three grain‐size fractions: fine (<44 μm), medium (44–210 μm) and coarse (>210 μm). The grain‐size distribution varied among reefs, with the majority of the sediment of most reefs being composed of coarse sands, and the medium and fine fractions dominating only at La Entrega and Playa Blanca. All the reefs presented clear evidence of bioerosion by sponges, with the characteristic chips present in the sediment, although at most sites the percentage of chips was very low (from 1% to 3% of the total sediment). Only at La Entrega and Playa Blanca did they constitute a significant fraction of the total sediment (18% and 16%, respectively). While not statistically significant, there was an interesting trend between sponge chips versus sponge abundance that suggests that quantification of the chips in the sediment could be used as a proxy for sponge erosion of the entire community, which cannot be estimated in by laboratory experiments. However, while this methodology could provide an integrated approach to monitor sponge bioerosion, more studies are necessary due to the influence of environmental factors on the transport and deposition of these chips.
Ecological assessments of the coral reef communities in the Eastern Caribbean and the effects of herbivory in influencing coral juvenile density and algal cover
Authors: Williams Stacey M. , Sánchez‐Godínez Cristina , Newman Steven P. , Cortés Jorge 
Published: September 2016

AbstractCaribbean reefs have been unevenly surveyed, with many areas lacking baseline data. In this study, the current status of Orbicella reefs, a structurally complex forereef habitat, was quantified in an understudied region, the Eastern Caribbean. During 2011 the same observers surveyed benthic assemblages, coral juvenile density, herbivorous fishes, and invertebrates at 30 Orbicella reefs in four Eastern Caribbean areas: Antigua, Barbados, St Lucia, and St Vincent and the Grenadines (hereafter St Vincent). Not all Orbicella forereefs were functionally the same in the Eastern Caribbean. Benthic communities and herbivorous fishes varied greatly among islands. Hard coral had the highest overall percent cover on most reefs in this study, with an average cover of 22%, and was greater than fleshy macroalgal cover at 83% of the sites. Overall, coral juvenile density was low but was positively associated with higher densities of Diadema antillarum, highlighting the importance of herbivory on the reefs. Nearshore coral reefs in Barbados were in a better state than other areas, exhibiting higher coral cover dominated by spawning corals, higher densities of coral juveniles exhibiting higher coral cover dominated by spawning corals, higher densities of coral juveniles and D. antillarum. Low biomass of herbivorous fishes at a majority of the coral reef sites is of major concern for the functioning of these reefs. Conservation of parrotfishes and other herbivores is necessary given the abundance of algae on most of these reefs and the beneficial effect of their presence on coral juveniles. This is the first comprehensive study that compares the state of Orbicella reefs in the Eastern Caribbean, providing valuable information that will be useful in creating realistic targets for future management and conservation.
Global variations in regolith properties on asteroid Vesta from Dawn's low‐altitude mapping orbit
Authors: Denevi Brett W. , Beck Andrew W. , Coman Ecaterina I. , Thomson Bradley J. , Ammannito Eleonora , Blewett David T. , Sunshine Jessica M. , De Sanctis Maria Cristina , Li Jian‐Yang , Marchi Simone , Mittlefehldt David W. , Petro Noah E. , Raymond Carol A. , Russell Christopher T. 
Published: September 2016

AbstractWe investigate the depth, variability, and history of regolith on asteroid Vesta using data from the Dawn spacecraft. High‐resolution (15–20 m pixel−1) Framing Camera images are used to assess the presence of morphologic indicators of a shallow regolith, including the presence of blocks in crater ejecta, spur‐and‐gully–type features in crater walls, and the retention of small (<300 m) impact craters. Such features reveal that the broad, regional heterogeneities observed on Vesta in terms of albedo and surface composition extend to the physical properties of the upper ~1 km of the surface. Regions of thin regolith are found within the Rheasilvia basin and at equatorial latitudes from ~0–90°E and ~260–360°E. Craters in these areas that appear to excavate material from beneath the regolith have more diogenitic (Rheasilvia, 0–90°E) and cumulate eucrite (260–360°E) compositions. A region of especially thick regolith, where depths generally exceed 1 km, is found from ~100–240°E and corresponds to heavily cratered, low‐albedo surface with a basaltic eucrite composition enriched in carbonaceous chondrite material. The presence of a thick regolith in this area supports the idea that this is an ancient terrain that has accumulated a larger component of exogenic debris. We find evidence for the gardening of crater ejecta toward more howarditic compositions, consistent with regolith mixing being the dominant form of “weathering” on Vesta.
High migration rates shape the postglacial history of amphi‐Atlantic bryophytes
Authors: Désamoré Aurélie , Patiño Jairo , Mardulyn Patrick , Mcdaniel Stuart F. , Zanatta Florian , Laenen Benjamin , Vanderpoorten Alain 
Published: September 2016

AbstractPaleontological evidence and current patterns of angiosperm species richness suggest that European biota experienced more severe bottlenecks than North American ones during the last glacial maximum. How well this pattern fits other plant species is less clear. Bryophytes offer a unique opportunity to contrast the impact of the last glacial maximum in North America and Europe because about 60% of the European bryoflora is shared with North America. Here, we use population genetic analyses based on approximate Bayesian computation on eight amphi‐Atlantic species to test the hypothesis that North American populations were less impacted by the last glacial maximum, exhibiting higher levels of genetic diversity than European ones and ultimately serving as a refugium for the postglacial recolonization of Europe. In contrast with this hypothesis, the best‐fit demographic model involved similar patterns of population size contractions, comparable levels of genetic diversity and balanced migration rates between European and North American populations. Our results thus suggest that bryophytes have experienced comparable demographic glacial histories on both sides of the Atlantic. Although a weak, but significant genetic structure was systematically recovered between European and North American populations, evidence for migration from and towards both continents suggests that amphi‐Atlantic bryophyte population may function as a metapopulation network. Reconstructing the biogeographic history of either North American or European bryophyte populations therefore requires a large, trans‐Atlantic geographic framework.
Population structure and gene flow in the global pest, Helicoverpa armigera
Authors: Anderson C. J. , Tay W. T. , McGaughran A. , Gordon K. , Walsh T. K. 
Published: September 2016

AbstractHelicoverpa armigera is a major agricultural pest that is distributed across Europe, Asia, Africa and Australasia. This species is hypothesized to have spread to the Americas 1.5 million years ago, founding a population that is at present, a distinct species, Helicoverpa zea. In 2013, H. armigera was confirmed to have re‐entered South America via Brazil and subsequently spread. The source of the recent incursion is unknown and population structure in H. armigera is poorly resolved, but a basic understanding would highlight potential biosecurity failures and determine the recent evolutionary history of region‐specific lineages. Here, we integrate several end points derived from high‐throughput sequencing to assess gene flow in H. armigera and H. zea from populations across six continents. We first assemble mitochondrial genomes to demonstrate the phylogenetic relationship of H. armigera with other Heliothine species and the lack of distinction between populations. We subsequently use de novo genotyping‐by‐sequencing and whole‐genome sequences aligned to bacterial artificial chromosomes, to assess levels of admixture. Primarily, we find that Brazilian H. armigera are derived from diverse source populations, with strong signals of gene flow from European populations, as well as prevalent signals of Asian and African ancestry. We also demonstrate a potential field‐caught hybrid between H. armigera and H. zea, and are able to provide genomic support for the presence of the H. armigera conferta subspecies in Australasia. While structure among the bulk of populations remains unresolved, we present distinctions that are pertinent to future investigations as well as to the biosecurity threat posed by H. armigera.
Environment not dispersal limitation drives clonal composition of Arctic Daphnia in a recently deglaciated area
Authors: Haileselasie Tsegazeabe H. , Mergeay Joachim , Weider Lawrence J. , Sommaruga Ruben , Davidson Thomas A. , Meerhoff Mariana , Arndt Hartmut , Jürgens Klaus , Jeppesen Erik , De Meester Luc 
Published: September 2016

AbstractOne of the most prominent manifestations of the ongoing climate warming is the retreat of glaciers and ice sheets around the world. Retreating glaciers result in the formation of new ponds and lakes, which are available for colonization. The gradual appearance of these new habitat patches allows us to determine to what extent the composition of asexual Daphnia (water flea) populations is affected by environmental drivers vs. dispersal limitation. Here, we used a landscape genetics approach to assess the processes structuring the clonal composition of species in the D. pulex species complex that have colonized periglacial habitats created by ice‐sheet retreat in western Greenland. We analysed 61 populations from a young (<50 years) and an old cluster (>150 years) of lakes and ponds. We identified 42 asexual clones that varied widely in spatial distribution. Beta‐diversity was higher among older than among younger systems. Lineage sorting by the environment explained 14% of the variation in clonal composition whereas the pure effect of geographical distance was very small and statistically insignificant ( = 0.010, P = 0.085). Dispersal limitation did not seem important, even among young habitat patches. The observation of several tens of clones colonizing the area combined with environmentally driven clonal composition of populations illustrates that population assembly of asexual species in the Arctic is structured by environmental gradients reflecting differences in the ecology of clones.
Parapatric genetic introgression and phenotypic assimilation: testing conditions for introgression between Hercules beetles (Dynastes, Dynastinae)
Authors: Huang Jen‐Pan 
Published: September 2016

AbstractThe prevalence and consequences of genetic introgression between species have been intensively debated. I used Hercules beetles as examples to test for conditions that may be associated with the occurrence of introgression. RADseq data were used to reconstruct the species tree and history of introgression between Hercules beetles. Image data from museum specimens were used to investigate the phenotypic similarity of two adaptive traits between species from two distinct climatic realms (Nearctic vs. Neotropical). Genetic introgression was identified between Hercules beetles living in geographic proximity (parapatric). Phylogenetic relatedness and phenotypic similarity did not predict nor preclude genetic introgression between species. Phenotypic assimilation in body coloration was evident between distantly related Hercules beetles codistributed in Central America, where directional introgression was also statistically supported from the putative donor to receiver lineages. The number of introgressed loci was significantly higher between species with than without phenotypic similarity. I discuss the implications of recent studies on adaptive genetic introgression by providing supporting evidence from the Hercules beetle system.
Using long‐term experimental evolution to uncover the patterns and determinants of molecular evolution of an Escherichia coli natural isolate in the streptomycin‐treated mouse gut
Authors: Lescat Mathilde , Launay Adrien , Ghalayini Mohamed , Magnan Mélanie , Glodt Jérémy , Pintard Coralie , Dion Sara , Denamur Erick , Tenaillon Olivier 
Published: September 2016

AbstractAlthough microbial ecology of the gut is now a major focus of interest, little is known about the molecular determinants of microbial adaptation in the gut. Experimental evolution coupled with whole‐genome sequencing can provide insights of the adaptive process. In vitro experiments have revealed some conserved patterns: intermediate convergence, and epistatic interactions between beneficial mutations and mutations in global regulators. To test the relevance of these patterns and to identify the selective pressures acting in vivo, we have performed a long‐term adaptation of an E. coli natural isolate, the streptomycin‐resistant strain 536, in the digestive tract of streptomycin‐treated mice. After a year of evolution, a clone from 15 replicates was sequenced. Consistently with in vitro observations, the identified mutations revealed a strong pattern of convergence at the mutation, gene, operon and functional levels. Yet, the rate of molecular evolution was lower than in in vitro, and no mutations in global regulators were recovered. More specific targets were observed: the dgo operon, involved in the galactonate pathway that improved growth on D‐galactonate, and rluD and gidB, implicated in the maturation of the ribosomes, which mutations improved growth only in the presence of streptomycin. As in vitro, the nonrandom associations of mutations within the same pathways suggested a role of epistasis in shaping the adaptive landscape. Overall, we show that ‘evolve and sequence’ approach coupled with an analysis of convergence, when applied to a natural isolate, can be used to study adaptation in vivo and uncover the specific selective pressures of that environment.