bluuebunny/crossref_metadata_2025_split huggingface dataset:
Large-scale transcriptome changes in the process of long-term visual memory formation in the bumblebee, Bombus terrestris
Authors: Li Li , Su Songkun , Perry Clint J. , Elphick Maurice R. , Chittka Lars , Søvik Eirik 
Published: January 2018

AbstractMany genes have been implicated in mechanisms of long-term memory formation, but there is still much to be learnt about how the genome dynamically responds, transcriptionally, during memory formation. In this study, we used high-throughput sequencing to examine how transcriptome profiles change during visual memory formation in the bumblebee (Bombus terrestris). Expression of fifty-five genes changed immediately after bees were trained to associate reward with a single coloured chip, and the upregulated genes were predominantly genes known to be involved in signal transduction. Changes in the expression of eighty-one genes were observed four hours after learning a new colour, and the majority of these were upregulated and related to transcription and translation, which suggests that the building of new proteins may be the predominant activity four hours after training. Several of the genes identified in this study (e.g. Rab10, Shank1 and Arhgap44) are interesting candidates for further investigation of the molecular mechanisms of long-term memory formation. Our data demonstrate the dynamic gene expression changes after associative colour learning and identify genes involved in each transcriptional wave, which will be useful for future studies of gene regulation in learning and long-term memory formation.
Tailoring Lattice Strain and Ferroelectric Polarization of Epitaxial BaTiO3 Thin Films on Si(001)
Authors: Lyu Jike , Fina Ignasi , Solanas Raul , Fontcuberta Josep , Sánchez Florencio 
Published: January 2018

AbstractFerroelectric BaTiO3 films with large polarization have been integrated with Si(001) by pulsed laser deposition. High quality c-oriented epitaxial films are obtained in a substrate temperature range of about 300 °C wide. The deposition temperature critically affects the growth kinetics and thermodynamics balance, resulting on a high impact in the strain of the BaTiO3 polar axis, which can exceed 2% in films thicker than 100 nm. The ferroelectric polarization scales with the strain and therefore deposition temperature can be used as an efficient tool to tailor ferroelectric polarization. The developed strategy overcomes the main limitations of the conventional strain engineering methodologies based on substrate selection: it can be applied to films on specific substrates including Si(001) and perovskites, and it is not restricted to ultrathin films.
Validity of Valence Estimation of Dopants in Glasses using XANES Analysis
Authors: Masai Hirokazu , Ina Toshiaki , Okumura Shun , Mibu Ko 
Published: January 2018

AbstractX-ray absorption near edge structure (XANES) measurement is one of the most powerful tools for the evaluation of a cation valence state. XANES measurement is sometimes the only available technique for the evaluation of the valence state of a dopant cation, which often occurs in phosphor materials. The validity of the core excitation process should be examined as a basis for understanding the applicability of this technique. Here, we demonstrate the validity of valence estimation of tin in oxide glasses, using Sn K-edge and L-edge XANES spectra, and compare the results with 119Sn Mössbauer analysis. The results of Sn K-edge XANES spectra analysis reveal that this approach cannot evaluate the actual valence state. On the contrary, in LII-edge absorption whose transition is 2p1/2-d, the change of the white line corresponds to the change of the valence state of tin, which is calculated from the 119Sn Mössbauer spectra. Among several analytical approaches, valence evaluation using the peak area, such as the absorption edge energy E0 at the fractions of the edge step or E0 at the zero of the second derivative, is better. The observed findings suggest that the valence state of a heavy element in amorphous materials should be discussed using several different definitions with error bars, even though L-edge XANES analyses are used.
Node of Ranvier as an Array of Bio-Nanoantennas for Infrared Communication in Nerve Tissue
Authors: Zangari Andrea , Micheli Davide , Galeazzi Roberta , Tozzi Antonio 
Published: January 2018

AbstractElectromagnetic radiation, in the visible and infrared spectrum, is increasingly being investigated for its possible role in the most evolved brain capabilities. Beside experimental evidence of electromagnetic cellular interactions, the possibility of light propagation in the axon has been recently demonstrated using computational modelling, although an explanation of its source is still not completely understood. We studied electromagnetic radiation onset and propagation at optical frequencies in myelinated axons, under the assumption that ion channel currents in the node of Ranvier behave like an array of nanoantennas emitting in the wavelength range from 300 to 2500 nm. Our results suggest that the wavelengths below 1600 nm are most likely to propagate throughout myelinated segments. Therefore, a broad wavelength window exists where both generation and propagation could happen, which in turn raises the possibility that such a radiation may play some role in neurotransmission.
A Tet-Off gene expression system for validation of antifungal drug targets in a murine invasive pulmonary aspergillosis model
Authors: Peng Yutian , Zhang Hua , Xu Min , Tan Man-Wah 
Published: January 2018

AbstractAspergillus fumigatus is one of the major causes of invasive pulmonary aspergillosis in immunocompromised patients. Novel antifungal therapy is in urgent need due to emerging resistance and adverse toxicity of current antifungal drugs. Gene products that are essential for Aspergillus viability during infection are attractive drug targets. To characterize these genes in vivo we developed a Tet-Off gene expression system in A. fumigatus, whereby the administration of doxycycline resulted in down regulation of the gene whose expression is under the control of the Tet-Off promoter. We tested the system on two potential drug targets, inosine 5′-monophosphate dehydrogenase (IMPDH) and L-ornithine N5-oxygenase (sidA) in a murine invasive pulmonary aspergillosis model. We show that depletion of IMPDH attenuated but did not completely abolish virulence in vivo whereas turning off the expression of sidA, which is required for iron acquisition, resulted in avirulence. We also investigated whether sidA expression could be controlled in a time-dependent manner in mice. Our results demonstrated that timing of doxycycline administration dramatically affects survival rate, suggesting that this genetic system can be used for testing whether an antifungal drug target is critical for fungal growth post-infection.
Effects of Bt cabbage pollen on the honeybee Apis mellifera L
Authors: Yi Dengxia , Fang Zhiyuan , Yang Limei 
Published: January 2018

AbstractHoneybees may be exposed to insecticidal proteins from transgenic plants via pollen during their foraging activity. Assessing effects of such exposures on honeybees is an essential part of the risk assessment process for transgenic Bacillus thuringiensis (Bt) cabbage. Feeding trials were conducted in a laboratory setting to test for possible effects of Cry1Ba3 cabbage pollen on Italian-derived honeybees Apis mellifera L. Newly emerged A. mellifera were fed transgenic pollen, activated Cry1Ba3 toxin, pure sugar syrup (60% w/v sucrose solution), and non-transgenic cabbage pollen, respectively. Then the effects on survival, pollen consumption, weight, detoxification enzyme activity and midgut enzyme activity of A. mellifera were monitored. The results showed that there were no significant differences in survival, pollen consumption, weight, detoxification enzyme activity among all treatments. No significant differences in the activities of total proteolytic enzyme, active alkaline trypsin-like enzyme and weak alkaline trypsin-like enzyme were observed among all treatments. These results indicate that the side-effects of the Cry1Ba3 cabbage pollen on A. mellifera L. are unlikely.
IL-13 in LPS-Induced Inflammation Causes Bcl-2 Expression to Sustain Hyperplastic Mucous cells
Authors: Chand Hitendra S. , Harris Jennifer F. , Tesfaigzi Yohannes 
Published: January 2018

AbstractExposure to lipopolysaccharides (LPS) causes extensive neutrophilic inflammation in the airways followed by mucous cell hyperplasia (MCH) that is sustained by the anti-apoptotic protein, Bcl-2. To identify inflammatory factor(s) that are responsible for Bcl-2 expression, we established an organ culture system consisting of airway epithelial tissue from the rat nasal midseptum. The highest Muc5AC and Bcl-2 expression was observed when organ cultures were treated with brochoalveolar lavage (BAL) fluid harvested from rats 10 h post LPS instillation. Further, because BAL harvested from rats depleted of polymorphonuclear cells compared to controls showed increased Bcl-2 expression, analyses of cytokine levels in lavages identified IL-13 as an inducer of Bcl-2 expression. Ectopic IL-13 treatment of differentiated airway epithelial cells increased Bcl-2 and MUC5AC expression in the basal and apical regions of the cells, respectively. When Bcl-2 was blocked using shRNA or a small molecule inhibitor, ABT-263, mucous cell numbers were reduced due to increased apoptosis that disrupted the interaction of Bcl-2 with the pro-apoptotic protein, Bik. Furthermore, intranasal instillation of ABT-263 reduced the LPS-induced MCH inbik+/+but notbik−/−mice, suggesting that Bik mediated apoptosis in hyperplastic mucous cells. Therefore, blocking Bcl-2 function could be useful in reducing IL-13 induced mucous hypersecretion.
The Rotation of Microrobot Simplifies 3D Control Inside Microchannels
Authors: Barbot Antoine , Decanini Dominique , Hwang Gilgueng 
Published: January 2018

AbstractThis paper focuses on the control of rotating helical microrobots inside microchannels. We first use a 50 μm long and 5 μm in diameter helical robot to prove that the proximity of the channel walls create a perpendicular force on the robot. This force makes the robot orbit around the channel center line. We also demonstrate experimentally that this phenomenon simplifies the robot control by guiding it on a channel even if the robot propulsion is not perfectly aligned with the channel direction. We then use numerical simulations, validated by real experimental cases, to show different implications on the microrobot control of this orbiting phenomenon. First, the robot can be centered in 3D inside an in-plane microchannel only by controlling its horizontal direction (yaw angle). This means that a rotating microrobot can be precisely controlled along the center of a microfluidic channel only by using a standard 2D microscopy technology. Second, the robot horizontal (yaw) and vertical (pitch) directions can be controlled to follow a 3D evolving channel only with a 2D feedback. We believe this could lead to simplify imaging systems for the potential in vivo integration of such microrobots.
Delivery of xenon-containing echogenic liposomes inhibits early brain injury following subarachnoid hemorrhage
Authors: Miao Yi-Feng , Peng Tao , Moody Melanie R. , Klegerman Melvin E. , Aronowski Jaroslaw , Grotta James , McPherson David D. , Kim Hyunggun , Huang Shao-Ling 
Published: January 2018

AbstractXenon (Xe), a noble gas, has promising neuroprotective properties with no proven adverse side-effects. We evaluated neuroprotective effects of Xe delivered by Xe-containing echogenic liposomes (Xe-ELIP) via ultrasound-controlled cerebral drug release on early brain injury following subarachnoid hemorrhage (SAH). The Xe-ELIP structure was evaluated by ultrasound imaging, electron microscopy and gas chromatography-mass spectroscopy. Animals were randomly divided into five groups: Sham, SAH, SAH treated with Xe-ELIP, empty ELIP, or Xe-saturated saline. Treatments were administrated intravenously in combination with ultrasound application over the common carotid artery to trigger Xe release from circulating Xe-ELIP. Hematoma development was graded by SAH scaling and quantitated by a colorimetric method. Neurological evaluation and motor behavioral tests were conducted for three days following SAH injury. Ultrasound imaging and electron microscopy demonstrated that Xe-ELIP have a unique two-compartment structure, which allows a two-stage Xe release profile. Xe-ELIP treatment effectively reduced bleeding, improved general neurological function, and alleviated motor function damage in association with reduced apoptotic neuronal death and decreased mortality. Xe-ELIP alleviated early SAH brain injury by inhibiting neuronal death and bleeding. This novel approach provides a noninvasive strategy of therapeutic gas delivery for SAH treatment.
An epidemiological study of the risk factors associated with myopia in young adult men in Korea
Authors: Lee Dong Cheol , Lee Se Youp , Kim Yu Cheol 
Published: January 2018

AbstractThe prevalence of myopia has been increasing worldwide. Its causes are not completely clear, although genetic and environmental factors are thought to play a role. Data were collected by the Korean Military Manpower Administration. Frequency analysis was used for comparisons of general characteristics. Pearson’s chi-square tests and logistic regression analysis were used to verify the correlations between possible risk factors and the prevalence of myopia or high myopia. The prevalence of myopia (50.6–53.0%) and high myopia (11.3–12.9%) increased each year. These tended to be the highest in patients born in spring, and decreased in the following order according to education level: 4- or 6-year university education or more, high school education or less, and 2- to 3-year college education. Moreover, the prevalence of myopia and high myopia was significantly higher in patients ≤ 60 kg and with a body mass index ≤ 18.5 kg/m2. The prevalence of high myopia was significantly higher in taller patients (≥175 cm). The prevalence of myopia and high myopia increased each year in Korean young adult men and was associated with birth season, education level, height, weight, and body mass index. Tall, lean men were more likely to have high myopia.
Discovery of Hepatotoxic Equivalent Combinatorial Markers from Dioscorea bulbifera tuber by Fingerprint-Toxicity Relationship Modeling
Authors: Shi Wei , Zhang Cai , Zhao Dongsheng , Wang Lingli , Li Ping , Li Huijun 
Published: January 2018

AbstractDue to extremely chemical complexity, identification of potential toxicity-related constituents from an herbal medicine (HM) still remains challenging. Traditional toxicity-guided separation procedure suffers from time- and labor-consumption and neglects the additive effect of multi-components. In this study, we proposed a screening strategy called “hepatotoxic equivalent combinatorial markers (HECMs)” for a hepatotoxic HM, Dioscorea bulbifera tuber (DBT). Firstly, the chemical constituents in DBT extract were globally characterized. Secondly, the fingerprints of DBT extracts were established and their in vivo hepatotoxicities were tested. Thirdly, three chemometric tools including partial least squares regression (PLSR), back propagation-artificial neural network (BP-ANN) and cluster analysis were applied to model the fingerprint-hepatotoxicity relationship and to screen hepatotoxicity-related markers. Finally, the chemical combination of markers was subjected to hepatotoxic equivalence evaluation. A total of 40 compounds were detected or tentatively characterized. Two diterpenoid lactones, 8-epidiosbulbin E acetate (EEA) and diosbulbin B (DIOB), were discovered as the most hepatotoxicity-related markers. The chemical combination of EEA and DIOB, reflecting the whole hepatotoxicity of original DBT extract with considerable confidential interval, was verified as HECMs for DBT. The present study is expected not only to efficiently discover hepatotoxicity-related markers of HMs, but also to rationally evaluate/predict the hepatotoxicity of HMs.
Unsupervised Learning and Pattern Recognition of Biological Data Structures with Density Functional Theory and Machine Learning
Authors: Chen Chien-Chang , Juan Hung-Hui , Tsai Meng-Yuan , Lu Henry Horng-Shing 
Published: January 2018

AbstractBy introducing the methods of machine learning into the density functional theory, we made a detour for the construction ofthe most probabledensity function, which can be estimated by learning relevant features from the system of interest. Using the properties of universal functional, the vital core of density functional theory, themost probablecluster numbers and the corresponding cluster boundaries in a studying system can be simultaneously and automatically determined and the plausibility is erected on the Hohenberg-Kohn theorems. For the method validation and pragmatic applications, interdisciplinary problems from physical to biological systems were enumerated. The amalgamation of uncharged atomic clusters validated the unsupervised searching process of the cluster numbers and the corresponding cluster boundaries were exhibited likewise. High accurate clustering results of the Fisher’s iris dataset showed the feasibility and the flexibility of the proposed scheme. Brain tumor detections from low-dimensional magnetic resonance imaging datasets and segmentations of high-dimensional neural network imageries in theBrainbowsystem were also used to inspect the method practicality. The experimental results exhibit the successful connection between the physical theory and the machine learning methods and will benefit the clinical diagnoses.
Human complement receptor type 1 (CR1) protein levels and genetic variants in chronic Chagas Disease
Authors: Sandri Thaisa Lucas , Lidani Kárita Cláudia Freitas , Andrade Fabiana Antunes , Meyer Christian G. , Kremsner Peter G. , de Messias-Reason Iara J. , Velavan Thirumalaisamy P. 
Published: January 2018

AbstractComplement is an essential element in both innate and acquired immunity contributing to the immunopathogenesis of many disorders, including Chagas Disease (CD). Human complement receptor 1 (CR1) plays a role in the clearance of complement opsonized molecules and may facilitate the entry of pathogens into host cells. Distinct CR1 exon 29 variants have been found associated with CR1 expression levels, increased susceptibility and pathophysiology of several diseases. In this study, CR1 plasma levels were assessed by ELISA and CR1 variants in exon 29 by sequencing in a Brazilian cohort of 232 chronic CD patients and 104 healthy controls. CR1 levels were significantly decreased in CD patients compared to controls (p < 0.0001). The CR1 rs1704660G, rs17047661G and rs6691117G variants were significantly associated with CD and in high linkage disequilibrium. The CR1*AGAGTG haplotype was associated with T. cruzi infection (p = 0.035, OR 3.99, CI 1.1-14.15) whereas CR1*AGGGTG was related to the risk of chagasic cardiomyopathy (p = 0.028, OR 12.15, CI 1.13-113). This is the first study that provides insights on the role of CR1 in development and clinical presentation of chronic CD.
Anticancer potentiality of lignan rich fraction of six Flaxseed cultivars
Authors: Ezzat Shahira M. , Shouman Samia A. , Elkhoely Abeer , Attia Yasmin M. , Elsesy Mohamed S. , El Senousy Amira S. , Choucry Mouchira A. , El Gayed Sabah H. , El Sayed Abeer A. , Sattar Essam Abdel , El Tanbouly Nebal 
Published: January 2018

AbstractThe objective of our study is to highlight the therapeutic effect and mechanism of action by which purified Flaxseed hydrolysate (PFH) which is a lignan rich fraction exerts its anticancer activity on a human breast cancer cell line (T47D) and in mice bearing tumor. HPLC analysis of PFH of six flaxseed cultivars had shown that PFH of the cultivar Giza 9 (PFH-G9) contains the highest concentration of SDG (81.64 mg/g). The in vitro cytotoxic potentiality of PFH’s of six flaxseed cultivars was screened against a panel of human cancer cell lines. PFH -G9 showed the most significant cytotoxic activity against ER-receptor positive breast cell lines MCF7 and T47D with IC50 13.8 and 15.8 µg/ml, respectively. Moreover, PFH-G9 reduced the expression of the metastasis marker, 1-α, metalloproteinases and vascular endothelial growth factor (VEGF), one of the most potent stimulators of angiogenesis, while it increased the caspase-3 dependent apoptosis. Our study also showed that dietary intake of 10% of Giza 9 Flaxseeds (FS), fixed oil (FSO) or Flax meal (FSM) twice daily for 3 weeks in mice-bearing solid Ehrlich ascites carcinoma (EAC) resulted in reducing the tumor volume, the expression of estrogen, insulin growth factor, progesterone, VEGF and MMP-2, but enhanced expression of caspase-3.
Observation of carrier localization in cubic crystalline Ge2Sb2Te5 by field effect measurement
Authors: Qian Hang , Tong Hao , He Ming-Ze , Ji Hong-Kai , Zhou Ling-Jun , Xu Ming , Miao Xiang-Shui 
Published: January 2018

AbstractThe tunable disorder of vacancies upon annealing is an important character of crystalline phase-change material Ge2Sb2Te5 (GST). A variety of resistance states caused by different degrees of disorder can lead to the development of multilevel memory devices, which could bring a revolution to the memory industry by significantly increasing the storage density and inspiring the neuromorphic computing. This work focuses on the study of disorder-induced carrier localization which could result in multiple resistance levels of crystalline GST. To analyze the effect of carrier localization on multiple resistant levels, the intrinsic field effect (the change in surface conductance with an applied transverse electric field) of crystalline GST was measured, in which GST films were annealed at different temperatures. The field effect measurement is an important complement to conventional transport measurement techniques. The field effect mobility was acquired and showed temperature activation, a hallmark of carrier localization. Based on the relationship between field effect mobility and annealing temperature, we demonstrate that the annealing shifts the mobility edge towards the valence-band edge, delocalizing more carriers. The insight of carrier transport in multilevel crystalline states is of fundamental relevance for the development of multilevel phase change data storage.
Multimodal tumor-homing chitosan oligosaccharide-coated biocompatible palladium nanoparticles for photo-based imaging and therapy
Authors: Bharathiraja Subramaniyan , Bui Nhat Quang , Manivasagan Panchanathan , Moorthy Madhappan Santha , Mondal Sudip , Seo Hansu , Phuoc Nguyen Thanh , Vy Phan Thi Tuong , Kim Hyehyun , Lee Kang Dae , Oh Junghwan 
Published: January 2018

AbstractPalladium, a near-infrared plasmonic material has been recognized for its use in photothermal therapy as an alternative to gold nanomaterials. However, its potential application has not been explored well in biomedical applications. In the present study, palladium nanoparticles were synthesized and the surface of the particles was successfully modified with chitosan oligosaccharide (COS), which improved the biocompatibility of the particles. More importantly, the particles were functionalized with RGD peptide, which improves particle accumulation in MDA-MB-231 breast cancer cells and results in enhanced photothermal therapeutic effects under an 808-nm laser. The RGD peptide-linked, COS-coated palladium nanoparticles (Pd@COS-RGD) have good biocompatibility, water dispersity, and colloidal and physiological stability. They destroy the tumor effectively under 808-nm laser illumination at 2 W cm−2 power density. Further, Pd@COS-RGD gives good amplitude of photoacoustic signals, which facilitates the imaging of tumor tissues using a non-invasive photoacoustic tomography system. Finally, the fabricated Pd@COS-RGD acts as an ideal nanotheranostic agent for enhanced imaging and therapy of tumors using a non-invasive near-infrared laser.