bluuebunny/crossref_metadata_2025_split huggingface dataset:
Long-range spin wave mediated control of defect qubits in nanodiamonds
Authors: Andrich Paolo , de las Casas Charles F. , Liu Xiaoying , Bretscher Hope L. , Berman Jonson R. , Heremans F. Joseph , Nealey Paul F. , Awschalom David D. 
Published: July 2017

AbstractHybrid architectures that combine nitrogen-vacancy centers in diamond with other materials and physical systems have been proposed to enhance the nitrogen-vacancy center’s capabilities in many quantum sensing and information applications. In particular, spin waves in ferromagnetic materials are a promising candidate to implement these platforms due to their strong magnetic fields, which could be used to efficiently interact with the nitrogen-vacancy centers. Here, we develop an yttrium iron garnet-nanodiamond hybrid architecture constructed with the help of directed assembly and transfer printing techniques. Operating at ambient conditions, we demonstrate that surface confined spin waves excited in the ferromagnet can strongly amplify the interactions between a microwave source and the nitrogen-vacancy centers by enhancing the local microwave magnetic field by several orders of magnitude. Crucially, we show the existence of a regime in which coherent interactions between spin waves and nitrogen-vacancy centers dominate over incoherent mechanisms associated with the broadband magnetic field noise generated by the ferromagnet. These accomplishments enable the spin wave mediated coherent control of spin qubits over distances larger than 200 μm, and allow low power operations for future spintronic technologies.
Development and Validation of a Three-gene Prognostic Signature for Patients with Hepatocellular Carcinoma
Authors: Li Binghua , Feng Wendu , Luo Ouyang , Xu Tiancheng , Cao Yajuan , Wu Hongyan , Yu Decai , Ding Yitao 
Published: July 2017

AbstractHepatocellular carcinoma (HCC) is the leading cause of cancer-related death worldwide, because recurrence often occurs in most HCC patients undergoing hepatectomy. It is necessary to identify patients with high risk for recurrence and adopt effective therapies. An obstacle to monitor patients at high risk for poor prognosis has been the lack of useful predictive biomarkers. Fortunately, recent progress in system biology allows to screen the biomarkers for HCC prognosis in a high-throughput manner. In this study, we performed systematic Kaplan-Meier survival analysis of the whole mRNA transcriptomics based on the Cancer Genome Atlas project (TCGA) and developed a three-gene prognostic signature composing of three genes UPB1, SOCS2 and RTN3. The model was validated in two independent microarray data sets retrieved from Gene Expression Omnibus (GEO) and the expression pattern of these three predictive genes in HCC was confirmed by western blot and immunohistochemistry with our HCC samples. In conclusion, our results showed that this three-gene signature has prognostic value for HCC patients.
The right way to kiss: directionality bias in head-turning during kissing
Authors: Karim A. K. M. Rezaul , Proulx Michael J. , de Sousa Alexandra A. , Karmaker Chhanda , Rahman Arifa , Karim Fahria , Nigar Naima 
Published: July 2017

AbstractHumans have a bias for turning to the right in a number of settings. Here we document a bias in head-turning to the right in adult humans, as tested in the act of kissing. We investigated head-turning bias in both kiss initiators and kiss recipients for lip kissing, and took into consideration differences due to sex and handedness, in 48 Bangladeshi heterosexual married couples. We report a significant male bias in the initiation of kissing and a significant bias in head-turning to the right in both kiss initiators and kiss recipients, with a tendency among kiss recipients to match their partners’ head-turning direction. These interesting outcomes are explained by the influences of societal learning or cultural norms and the potential neurophysiological underpinnings which together offer novel insights about the mechanisms underlying behavioral laterality in humans.
Dietary lipid content reorganizes gut microbiota and probiotic L. rhamnosus attenuates obesity and enhances catabolic hormonal milieu in zebrafish
Authors: Falcinelli Silvia , Rodiles Ana , Hatef Azadeh , Picchietti Simona , Cossignani Lina , Merrifield Daniel L. , Unniappan Suraj , Carnevali Oliana 
Published: July 2017

AbstractIn the present study, we explored whether dietary lipid content influences the gut microbiome in adult zebrafish. Diets containing three different lipid levels (high [HFD], medium [MFD], and low [LFD]) were administered with or without the supplementation of Lactobacillus rhamnosus (P) to zebrafish in order to explore how the dietary lipid content may influence the gut microbiome. Dietary lipid content shifted the gut microbiome structure. The addition of L. rhamnosus in the diets, induced transcriptional reduction of orexigenic genes, upregulation of anorexigenic genes, and transcriptional decrease of genes involved in cholesterol and triglyceride (TAG) metabolism, concomitantly with lower content of cholesterol and TAG. Probiotic feeding also decreased nesfatin-1 peptide in HFD-P and attenuated weight gain in HFD-P and MFD-P fed zebrafish, but not in LFD-P group. Intestinal ultrastructure was not affected by dietary fat level or probiotic inclusion. In conclusion, these findings underline the role of fat content in the diet in altering gut microbiota community by shifting phylotype composition and highlight the potential of probiotics to attenuate high-fat diet-related metabolic disorder.
Quantifying Retail Agglomeration using Diverse Spatial Data
Authors: Piovani Duccio , Zachariadis Vassilis , Batty Michael 
Published: July 2017

AbstractNewly available data on the spatial distribution of retail activities in cities makes it possible to build models formalized at the level of the single retailer. Current models tackle consumer location choices at an aggregate level and the opportunity new data offers for modeling at the retail unit level lacks an appropriate theoretical framework. The model we present here helps to address these issues. Based on random utility theory, we have built it around the idea of quantifying the role of floor-space and agglomeration in retail location choice. We test this model on the inner area of Greater London. The results are consistent with a super linear scaling of a retailer’s attractiveness with its floorspace, and with an agglomeration effect approximated as the total retail floorspace within a 300 m radius from each shop. Our model illustrates many of the issues involved in testing and validating urban simulation models involving spatial data and its aggregation to different spatial scales.
HIV-1 enhances mTORC1 activity and repositions lysosomes to the periphery by co-opting Rag GTPases
Authors: Cinti Alessandro , Le Sage Valerie , Milev Miroslav P. , Valiente-Echeverría Fernando , Crossie Christina , Miron Marie-Joelle , Panté Nelly , Olivier Martin , Mouland Andrew J. 
Published: July 2017

AbstractHIV-1 co-opts several host machinery to generate a permissive environment for viral replication and transmission. In this work we reveal how HIV-1 impacts the host translation and intracellular vesicular trafficking machineries for protein synthesis and to impede the physiological late endosome/lysosome (LEL) trafficking in stressful conditions. First, HIV-1 enhances the activity of the master regulator of protein synthesis, the mammalian target of rapamycin (mTOR). Second, the virus commandeers mTOR-associated late endosome/lysosome (LEL) trafficking and counteracts metabolic and environmental stress-induced intracellular repositioning of LEL. We then show that the small Rag GTPases, RagA and RagB, are required for the HIV-1-mediated LEL repositioning that is likely mediated by interactions between the Rags and the viral proteins, Gag and Vif. siRNA-mediated depletion of RagA and RagB leads to a loss in mTOR association to LEL and to a blockade of viral particle assembly and release at the plasma membrane with a marked concomitant reduction in virus production. These results show that HIV-1 co-opts fundamental mechanisms that regulate LEL motility and positioning and support the notion that LEL positioning is critical for HIV-1 replication.
Ssu72 attenuates autoimmune arthritis via targeting of STAT3 signaling and Th17 activation
Authors: Lee Seung Hoon , Kim Eun-Kyung , Kwon Jeong-Eun , Lee Jin-Kwan , Lee DoHyeong , Kim Se-Young , Seo Hyeon-Beom , Na Hyun Sik , Jung KyoungAh , Kwok Seung-Ki , Lee Chang-Woo , Park Sung-Hwan , Cho Mi-La 
Published: July 2017

AbstractSignal transducer and activator of transcription 3 (STAT3) orchestrates the differentiation of several cell types, including interleukin-17 (IL-17)-releasing Th17 cells. Dysregulation of Th17 cells results in chronic inflammatory responses. Ssu72 is a C-terminal domain phosphatase required for transcriptional regulation. However, the mechanism by which Ssu72 affects STAT3 activation and Th17 cell differentiation is unclear. Here, we found that Ssu72 overexpression suppresses STAT3 activation and Th17 cell responsesin vitro. A systemic infusion of Ssu72 attenuates experimental autoimmune arthritis by reducing STAT3 activity and the differentiation of Th17 cells. It also reduces joint destruction, serum immunoglobulin concentrations and osteoclastogenesis but increases the number of marginal zone B cells and B10 cells. These effects are associated with reduced p-STAT3 levels and the suppression of Th17 cell formationin vivo. Based on these data, Ssu72 is related to STAT3 activation and the inflammatory response; and Ssu72 overexpression in T-cell-mediated immunity has potential utility for the treatment of autoimmune arthritis.
Super-resolution Surface Microscopy of Conductors using Magnetic Resonance
Authors: Ilott Andrew J. , Jerschow Alexej 
Published: July 2017

AbstractThe spatial resolution of traditional Magnetic Resonance Imaging (MRI) techniques is typically dictated by the strength of the applied magnetic field gradients, resulting in hard resolution limits of the order of 20–50 μm in favorable circumstances. We demonstrate here a technique which is suitable for the interrogation of regions at specified distances below the surface of conducting objects with a resolution well below these limiting values. This approach does not rely on magnetic field gradients, but rather on the spatial variation of the radiofrequency field within a conductor. Samples of aluminium and lithium metal with different sizes and morphologies are examined with this technique using 27Al and 7Li NMR. In this implementation, the slice selectivity depends on the conductivity of the material, as well as on the frequency of operation, although in the most general case, the technique could also be used to provide spatial selectivity with arbitrary B1 field distributions in non-conductors.
Design of Carbon Dots Photoluminescence through Organo-Functional Silane Grafting for Solid-State Emitting Devices
Authors: Suzuki Kazumasa , Malfatti Luca , Takahashi Masahide , Carboni Davide , Messina Fabrizio , Tokudome Yasuaki , Takemoto Masanori , Innocenzi Plinio 
Published: July 2017

AbstractAdvanced optical applications of fluorescent carbon dots (C-dots) require highly integrated host-guest solid-state materials with a careful design of C-dots – matrix interface to control the optical response. We have developed a new synthesis based on the grafting of an organo-functional silane (3-glycidyloxypropyltrimethoxysilane, GPTMS) on amino-functionalized C-dots, which enables the fabrication of highly fluorescent organosilica-based hybrid organic-inorganic films through sol-gel process. The GPTMS grafting onto C-dots has been achieved via an epoxy–amine reaction under controlled conditions. Besides providing an efficient strategy to embed C-dots into a hybrid solid-state material, the modification of C-dots surface by GPTMS allows tuning their photoluminescence properties and gives rise to an additional, intense emission around 490 nm. Photoluminescence spectra reveal an interaction between C-dots surface and the polymeric chains which are locally formed by GPTMS polymerization. The present method is a step forward to the development of a surface modification technology aimed at controlling C-dots host-guest systems at the nanoscale.
Environmental surveillance identifies multiple introductions of MRSA CC398 in an Equine Veterinary Hospital in the UK, 2011–2016
Authors: Bortolami Alessio , Williams Nicola J. , McGowan Catherine M. , Kelly Padraig G. , Archer Debra C. , Corrò Michela , Pinchbeck Gina , Saunders Christine J. , Timofte Dorina 
Published: July 2017

AbstractBacterial environmental and surgical site infection (SSI) surveillance was implemented from 2011–2016 in a UK Equine Referral Veterinary Hospital and identified 81 methicillin-resistant Staphylococcus aureus (MRSA) isolates. A cluster of MRSA SSIs occurred in early 2016 with the isolates confirmed as ST398 by multilocus sequence typing (MLST), which prompted retrospective analysis of all MRSA isolates obtained from the environment (n = 62), SSIs (n = 13) and hand plates (n = 6) in the past five years. Sixty five of these isolates were typed to CC398 and a selection of these (n = 38) were further characterised for resistance and virulence genes, SCCmec and spa typing. Overall, MRSA was identified in 62/540 (11.5%) of environmental samples, 6/81 of the hand-plates (7.4%) and 13/208 of the SSIs (6.3%). spa t011 was the most frequent (24/38) and Based Upon Repeat Pattern (BURP) analysis identified spa t011 as one of the two group founders of the main spa CC identified across the five years (spa CC011/3423). However, 3 singletons (t073, t786, t064) were also identified suggesting separate introductions into the hospital environment. This long-term MRSA surveillance study revealed multiple introductions of MRSA CC398 in a UK Equine Hospital, identifying an emerging zoonotic pathogen so far only sporadically recorded in the UK.
Persistent circulation of Coxsackievirus A6 of genotype D3 in mainland of China between 2008 and 2015
Authors: Song Yang , Zhang Yong , Ji Tianjiao , Gu Xinrui , Yang Qian , Zhu Shuangli , Xu Wen , Xu Yi , Shi Yong , Huang Xueyong , Li Qi , Deng Hong , Wang Xianjun , Yan Dongmei , Yu Wei , Wang Shuang , Yu Deshan , Xu Wenbo 
Published: July 2017

AbstractA total of 807 entire VP1 sequences of Coxsackievirus A6 (CV-A6) from mainland of China from 1992 to 2015, including 520 in this study and 287 from the GenBank database, were analysed to provide a basic framework of molecular epidemiological characteristics of CV-A6 in China. Sixty-five VP1 sequences including 46 representative CV-A6 isolates from 807 Chinese strains and 19 international strains from GenBank were used for describing the genotypes and sub-genotypes. The results revealed that CV-A6 strains can be categorised into 4 genotypes designated as A, B, C, and D according to previous data and can be further subdivided into B1–B2, C1–C2, and D1–D3 sub-genotypes. D3 is the predominant sub-genotype that circulated in recent years in mainland of China and represents 734 of 807 Chinese isolates. Sixty-six strains belong to D2, whereas B1 and C1 comprise a single strain each, and five AFP strains formed B2. Sub-genotype D3 first circulated in 2008 and has become the predominant sub-genotype since 2009 and then reached a peak in 2013, while D2 was mostly undetectable in the past years. These data revealed different transmission stages of CV-A6 in mainland of China and that sub-genotype D3 may have stronger transmission ability.
DOM-mediated membrane retention of fluoroquinolone as revealed by fluorescence quenching properties
Authors: Liang Shuang , Lu Li , Meng Fangang 
Published: July 2017

AbstractIn this study, membrane filtration tests showed that the membrane rejection degree of difloxacin hydrochloride (DFHC) increased significantly in the presence of Suwannee River DOM or Aldrich humic acid (2–10 mg-C/L). Titration experiments showed that the excitation and emission of Peak R belonging to DFHC exhibited blue shifts by 5 nm and 10 nm, respectively, in the presence of DOM. The presence of DFHC can, in turn, lead to more significant overlapping of the fluorescence peaks of the Suwannee River DOM and Aldrich humic acid. The parallel factor analysis (PARAFAC) of the excitation-emission matrix (EEM) spectra can well decompose the components belonging to DFHC from the DOM + DFHC mixtures. The maximum fluorescence intensity (FImax) of the antibiotic-like component (C1) sharply decreased upon the initial addition of DOM. More specifically, the Aldrich humic acid showed a larger quenching effect on DFHC than the Suwannee River DOM. The stability constants (KM) obtained by the Ryan and Weber model also corroborated that the Aldrich humic acid had a much higher binding stability (KM = 4.07 L/mg) than the Suwannee River DOM (KM = 0.86 L/mg). These results have great implications for our understanding of the membrane filtration behavior of trace contaminants in natural waters.
IgG3-antigen complexes are deposited on follicular dendritic cells in the presence of C1q and C3
Authors: Zhang Lu , Ding Zhoujie , Heyman Birgitta 
Published: July 2017

AbstractIgG3, passively administered together with small proteins, induces enhanced primary humoral responses against these proteins. We previously found that, within 2 h of immunization, marginal zone (MZ) B cells capture IgG3-antigen complexes and transport them into splenic follicles and that this requires the presence of complement receptors 1 and 2. We have here investigated the localization of IgG3 anti-2, 4, 6-trinitrophenyl (TNP)/biotin-ovalbumin-TNP immune complexes in the follicles and the involvement of classical versus total complement activation in this process. The majority (50–90%) of antigen inside the follicles of mice immunized with IgG3-antigen complexes co-localized with the follicular dendritic cell (FDC) network. Capture of antigen by MZ B cells as well as antigen deposition on FDC was severely impaired in mice lacking C1q or C3, and lack of either C1q or C3 also impaired the ability of IgG3 to enhance antibody responses. Finally, IgG3 efficiently primed for a memory response against small proteins as well as against the large protein keyhole limpet hemocyanine.
The CINSARC signature as a prognostic marker for clinical outcome in multiple neoplasms
Authors: Lesluyes Tom , Delespaul Lucile , Coindre Jean-Michel , Chibon Frédéric 
Published: July 2017

AbstractWe previously reported the CINSARC signature as a prognostic marker for metastatic events in soft tissue sarcomas, breast carcinomas and lymphomas through genomic instability, acting as a major factor for tumor aggressiveness. In this study, we used a published resource to investigate CINSARC enrichment in poor outcome-associated genes at pan-cancer level and in 39 cancer types. CINSARC outperformed more than 15,000 defined signatures (including cancer-related), being enriched in top-ranked poor outcome-associated genes of 21 cancer types, widest coverage reached among all tested signatures. Independently, this signature demonstrated significant survival differences between risk-groups in 33 published studies, representing 17 tumor types. As a consequence, we propose the CINSARC prognostication as a general marker for tumor aggressiveness to optimize the clinical managements of patients.
Recombinant Fasciola hepatica fatty acid binding protein suppresses toll-like receptor stimulation in response to multiple bacterial ligands
Authors: Ramos-Benítez Marcos J. , Ruiz-Jiménez Caleb , Aguayo Vasti , Espino Ana M. 
Published: July 2017

AbstractRecently, we reported that a nativeFasciola hepaticafatty acid binding protein (FABP) termed Fh12 is a powerful anti-inflammatory protein capable of suppressing the LPS-induced expression of inflammatory markersin vivoandin vitro. Because the purification of a protein in native form is, in many situations not cost-beneficial and unsuitable for industrial grade scale-up, this study accomplished the task of optimizing the expression and purification of a recombinant form of FABP (Fh15). Additionally, we ascertained whether this molecule could exhibit a similar suppressive effect on TLR-stimulation and inflammatory cytokine expression from macrophages than those previously demonstrated for the native molecule. Results demonstrated that Fh15 suppresses the expression of IL-1β and TNFα in murine macrophages and THP1 Blue CD14 cells. Additionally, Fh15 suppress the LPS-induced TLR4 stimulation. This effect was not impaired by a thermal denaturing process or blocked by the presence of anti-Fh12 antibodies. Fh15 also suppressed the stimulation of various TLRs in response to whole bacteria extracts, suggesting that Fh15 could have a broad spectrum of action. These results support the possibility of using Fh15 as an excellent alternative for an anti-inflammatory drug in preclinical studies in the near future.
Hyperuricemia and clustering of cardiovascular risk factors in the Chinese adult population
Authors: Wu Jie , Qiu Ling , Cheng Xin-qi , Xu Tao , Wu Wei , Zeng Xue-jun , Ye Yi-cong , Guo Xiu-zhi , Cheng Qian , Liu Qian , Liu Li , Xu Cheng-li , Zhu Guang-jin 
Published: July 2017

AbstractHyperuricemia is common in China and the relevance of hyperuricemia and cardiovascular disease (CVD) risk has been highlighted, but to date there has been rarely nation-wide study in China. Here, we aim to estimate the current prevalence of hyperuricemia and evaluate the associations between hyperuricemia and cardiovascular risk factors (CRFs) clustering in a large sample of China adults including a plurality of ethnic minorities. Generally, a nationally representative sample of 22983 adults aged ≥18 years was recruited from 2007 to 2011. Questionnaire data and information on anthropometric characteristics, and laboratory measurements were collected. We define hyperuricemia as SUA ≥416 mmol/L for men and SUA ≥357 mmol/L for women. We found that the prevalence of hyperuricemia was 13.0% (18.5% in men and 8.0% in women). To our estimation, hyperuricemic subjects had higher prevalence rates of CRFs clustering than non-hyperuricemic subjects. Furthermore, there was a dose-response association between the number of CVD risk factors clustering and hyperuricemia. Our study revealed a high prevalence of hyperuricemia and CVD risk factors clustering among Chinese adults, and hyperuricemia was significantly associated with coexistence of more CVD risk factors. Therefore, guidance and effective lifestyle intervention are required to prevent hyperuricemia and CVD risk factors in China.
Ecological interactions in Cloudina from the Ediacaran of Brazil: implications for the rise of animal biomineralization
Authors: Becker-Kerber Bruno , Pacheco Mírian Liza Alves Forancelli , Rudnitzki Isaac Daniel , Galante Douglas , Rodrigues Fabio , Leme Juliana de Moraes 
Published: July 2017

AbstractAt the Ediacaran/Cambrian boundary, ecosystems witnessed an unparalleled biological innovation: the appearance of shelled animals. Here, we report new paleoecological and paleobiological data on Cloudina, which was one of the most abundant shelled animals at the end of the Ediacaran. We report the close association of Cloudina tubes with microbial mat textures as well as organic-rich material, syndepositional calcite and goethite cement between their flanges, thus reinforcing the awareness of metazoan/microorganism interactions at the end of the Ediacaran. The preservation of in situ tubes suggests a great plasticity of substrate utilization, with evidence of different life modes and avoidance behavior. Geochemical analysis revealed walls composed of two secondary laminae and organic sheets. Some walls presented boreholes that are here described as predation marks. Taken together, these data add further information regarding the structuring of shelled animal communities in marine ecosystems.