bluuebunny/crossref_metadata_2025_split huggingface dataset:
A Prospective Study of 7‐Year Experience Using Percutaneous 14‐French Pigtail Catheters for Traumatic Hemothorax/Hemopneumothorax at a Level‐1 Trauma Center: Size Still Does Not Matter
Authors: Bauman Zachary M. , Kulvatunyou Narong , Joseph Bellal , Jain Arpana , Friese Randall S. , Gries Lynn , O’Keeffe Terence , Tang Andy L. , Vercruysse Gary , Rhee Peter 
Published: August 2017

AbstractBackgroundThe effectiveness of 14‐French (14F) pigtail catheters (PCs) compared to 32‐40F chest tubes (CTs) in patients with traumatic hemothorax (HTX) and hemopneumothorax (HPTX) is becoming more well known but still lacking. The aim of our study was to analyze our cumulative experience and outcomes with PCs in patients with traumatic HTX/HPTX. We hypothesized that PCs would be as effective as CTs.MethodsUsing our PC database, we analyzed all trauma patients who required chest drainage for HTX/HPTX from 2008 to 2014. Primary outcomes of interest, comparing PCs to CTs, included initial drainage output in milliliters (mL), tube insertion‐related complications, and failure rate. For our statistical analysis, we used the unpaired Student’s t test, Chi‐square test, and Wilcoxon rank‐sum test. We defined statistical significance as P < 0.05.ResultsDuring the 7‐year period, 496 trauma patients required chest drainage for traumatic HTX/HPTX: 307 by CTs and 189 by PCs. PC patients were older (52 ± 21 vs. 42 ± 19, P < 0.001), demonstrated a significantly higher occurrence of blunt trauma (86 vs. 55%, P ≤ 0.001), and had tubes placed in a non‐emergent fashion (Day 1 [interquartile range (IQR) 1–3 days] for PC placement vs. Day 0 [IQR 0–1 days] for CT placement, P < 0.001). All primary outcomes of interest were similar, except that the initial drainage output for PCs was higher (425 mL [IQR 200–800 mL] vs. 300 mL [IQR 150–500], P < 0.001). Findings for subgroup analysis among emergent and non‐emergent PC placement were also similar to CT placement.ConclusionPCs had similar outcomes to CTs in terms of failure rate and tube insertion‐related complications, and the initial drainage output from PCs was not inferior to that of CTs. The usage of PCs was, however, selective. A future multi‐center study is needed to provide additional support and information for PC usage in traumatic HTX/HPTX.
Cocrystallization coefficients of Cr, V, and Fe in hydrothermal ore systems (from experimental data)
Authors: Tauson V.L. , Smagunov N.V. , Lipko S.V. 
Published: August 2017

Abstract
The cocrystallization coefficients of Cr, V, and Fe (DMe/Fe) in magnetite and sulfide minerals (pyrite, chalcopyrite, and Fe-containing sphalerite) in multiphase associations are determined in hydrothermal-growth experiments with internal sampling at 450 °C and 100 MPa (1 kbar). The results are compared with previous data on DMn/Fe. Magnetite and pyrite are characterized by the highest DMe/Fe values for both Cr (1.2 and 2) and V (6.6 and 1.1). These minerals also show the highest mineral/solution distribution coefficients of Cr and V. For V and Cr in chalcopyrite, much lower DMe/Fe values (0.03 and 0.04, respectively) were obtained, which, however, are slightly higher than those for Mn in magnetite (0.01). Although the deposition of magnetite and iron sulfides has no significant effect on the evolution of Mn in solution and Mn–Fe partitioning, crystallization of magnetite and pyrite favors a decrease in Cr and V contents relative to Fe content in solution.
The data obtained can be used to reconstruct the chemical composition of paleofluids. Spinel minerals with close contents of Mn, V, and Cr can form through a hydrothermal process provided that the solutions are highly enriched in Mn relative to Fe and have V and Cr contents close to the Fe one. Such solutions seem to be exotic. Usually, a magnetite-forming hydrothermal fluid contains V and Cr as millionths of Fe, while the Mn content in it can be of the same order of magnitude as the Fe content. The data obtained may be of interest for reconstructing the evolution of the chemical composition of the World Ocean in different geologic periods.
The study has shown that the bulk distribution coefficient of variable-valence elements between mineral and hydrothermal solution varies over a wide range of values even at constant pressure, temperature, and solution composition and can be used only for qualitative estimation of the element compatibility. In contrast, the bulk cocrystallization coefficient of chemically similar elements is less dependent on physicochemical conditions, has a nearly three times lower variation coefficient, and permits an element partitioning analysis in heterogeneous mineral–fluid systems.
Natural electric fields in Siberian gold deposits: structure, origin, and relationship with gold orebodies
Authors: Erofeev L.Ya. , Orekhov A.N. , Erofeeva G.V. 
Published: August 2017

Abstract
Characteristics of the constant natural electric field in the Siberian gold ore areas are given. The regularities of spatial variations in the electric-field potential and the parameters and properties of anomalies have been established. The cause of the natural electric field in deposits of major genotypes has been elucidated. It is shown that the electric field is induced mainly by physicochemical processes running in electron-conducting syn-ore metasomatites and by circulation of groundwaters. Orebodies do not influence significantly the structure of the observed electric fields. We give recommendations on application of the electric-field method at various gold ore objects.
Quantitative sensory tests fairly reflect immediate effects of oxycodone in chronic low-back pain
Authors: Schliessbach Jürg , Siegenthaler Andreas , Bütikofer Lukas , Vuilleumier Pascal , Jüni Peter , Arendt-Nielsen Lars , Curatolo Michele 
Published: August 2017

Abstract

Introduction
Quantitative sensory tests (QST) can be used for profiling anti-nociceptive effects of analgesics. However, anti-nociceptive effects detected by QST are not necessarily associated with analgesic effects in pain patients. As part of a large investigation on low back pain, this paper describes the immediate analgesic and anti-nociceptive effects of oxycodone in chronic low-back pain and ranks different QST according to their ability to reflect this effect. The results are expected to support the selection of QST for future studies on potential novel opioid agonists in human pain.

Methods
In this randomized, placebo-controlled and double-blinded cross-over study, 50 patients with chronic low-back pain received a single oral dose of oxycodone 15 mg or active placebo, and underwent multiple QST testing. The intensity of low-back pain was recorded during 2 h. The areas under the ROC curves and 95% confidence intervals were determined, whereby responder status (≤30% pain reduction) was set as reference variable and changes in QST from baseline were set as classifiers.

Results
Significant analgesic effect on low-back pain as well as anti-nociceptive effects for almost all QST parameters were observed. The QST with the highest area under the curve were heat pain detection threshold (0.65,95%-CI 0.46 to 0.83), single-stimulus electrical pain threshold (0.64,95%-CI 0.47 to 0.80) and pressure pain detection threshold (0.63,95%-CI 0.48 to 0.79).

Conclusions
The results suggest that anti-nociceptive effects assessed by QST fairly reflect clinical efficacy of oxycodone on low-back pain. Pressure pain detection threshold, heat pain detection threshold and single-stimulus electrical pain threshold may be more suitable to sort out potential non-responders rather than identifying potential responders to opioid medication. Future pre-clinical human research may consider these results when investigating the analgesic effect of opioid agonists by means of QST.
Socioeconomic Status and Race Outperform Concussion History and Sport Participation in Predicting Collegiate Athlete Baseline Neurocognitive Scores
Authors: Houck Zac , Asken Breton , Clugston James , Perlstein William , Bauer Russell 
Published: August 2017

AbstractObjectives: The purpose of this study was to assess the contribution of socioeconomic status (SES) and other multivariate predictors to baseline neurocognitive functioning in collegiate athletes. Methods: Data were obtained from the Concussion Assessment, Research and Education (CARE) Consortium. Immediate Post-Concussion Assessment and Cognitive Testing (ImPACT) baseline assessments for 403 University of Florida student-athletes (202 males; age range: 18–23) from the 2014–2015 and 2015–2016 seasons were analyzed. ImPACT composite scores were consolidated into one memory and one speed composite score. Hierarchical linear regressions were used for analyses. Results: In the overall sample, history of learning disability (β=−0.164; p=.001) and attention deficit–hyperactivity disorder (β=−0.102; p=.038) significantly predicted worse memory and speed performance, respectively. Older age predicted better speed performance (β=.176; p<.001). Black/African American race predicted worse memory (β=−0.113; p=.026) and speed performance (β=−.242; p<.001). In football players, higher maternal SES predicted better memory performance (β=0.308; p=.007); older age predicted better speed performance (β=0.346; p=.001); while Black/African American race predicted worse speed performance (β=−0.397; p<.001). Conclusions: Baseline memory and speed scores are significantly influenced by history of neurodevelopmental disorder, age, and race. In football players, specifically, maternal SES independently predicted baseline memory scores, but concussion history and years exposed to sport were not predictive. SES, race, and medical history beyond exposure to brain injury or subclinical brain trauma are important factors when interpreting variability in cognitive scores among collegiate athletes. Additionally, sport-specific differences in the proportional representation of various demographic variables (e.g., SES and race) may also be an important consideration within the broader biopsychosocial attributional model. (JINS, 2018, 24, 1–10)
Shift current photovoltaic effect in a ferroelectric charge-transfer complex
Authors: Nakamura M. , Horiuchi S. , Kagawa F. , Ogawa N. , Kurumaji T. , Tokura Y. , Kawasaki M. 
Published: August 2017

AbstractShift current is a steady-state photocurrent generated in non-centrosymmetric single crystals and has been considered to be one of the major origins of the bulk photovoltaic effect. The mechanism of this effect is the transfer of photogenerated charges by the shift of the wave functions, and its amplitude is closely related to the polarization of the electronic origin. Here, we report the photovoltaic effect in an organic molecular crystal tetrathiafulvalene-p-chloranil with a large ferroelectric polarization mostly induced by the intermolecular charge transfer. We observe a fairly large zero-bias photocurrent with visible-light irradiation and switching of the current direction by the reversal of the polarization. Furthermore, we reveal that the travel distance of photocarriers exceeds 200 μm. These results unveil distinct features of the shift current and the potential application of ferroelectric organic molecular compounds for novel optoelectric devices.
Characterisation of sterol biosynthesis and validation of 14α-demethylase as a drug target in Acanthamoeba
Authors: Thomson Scott , Rice Christopher A. , Zhang Tong , Edrada-Ebel RuAngelie , Henriquez Fiona L. , Roberts Craig W. 
Published: August 2017

AbstractThe soil amoebae Acanthamoeba causes Acanthamoeba keratitis, a severe sight-threatening infection of the eye and the almost universally fatal granulomatous amoebic encephalitis. More effective treatments are required. Sterol biosynthesis has been effectively targeted in numerous fungi using azole compounds that inhibit the cytochrome P450 enzyme sterol 14α-demethylase. Herein, using Gas Chromatography Mass Spectrometry (GCMS), we demonstrate that the major sterol of Acanthamoeba castellanii is ergosterol and identify novel putative precursors and intermediate sterols in its production. Unlike previously reported, we find no evidence of 7-dehydrostigmasterol or any other phytosterol in Acanthamoeba. Of five azoles tested, we demonstrate that tioconazole and voriconazole have the greatest overall inhibition for all isolates of Acanthamoeba castellanii and Acanthamoeba polyphaga tested. While miconazole and sulconazole have intermediate activity econazole is least effective. Through GCMS, we demonstrate that voriconazole inhibits 14α-demethylase as treatment inhibits the production of ergosterol, but results in the accumulation of the lanosterol substrate. These data provide the most complete description of sterol metabolism in Acanthamoeba, provide a putative framework for their further study and validate 14α-demethylase as the target for azoles in Acanthamoeba.
PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data
Authors: Garneau Julian R. , Depardieu Florence , Fortier Louis-Charles , Bikard David , Monot Marc 
Published: August 2017

AbstractThe worrying rise of antibiotic resistance in pathogenic bacteria is leading to a renewed interest in bacteriophages as a treatment option. Novel sequencing technologies enable description of an increasing number of phage genomes, a critical piece of information to understand their life cycle, phage-host interactions, and evolution. In this work, we demonstrate how it is possible to recover more information from sequencing data than just the phage genome. We developed a theoretical and statistical framework to determine DNA termini and phage packaging mechanisms using NGS data. Our method relies on the detection of biases in the number of reads, which are observable at natural DNA termini compared with the rest of the phage genome. We implemented our method with the creation of the software PhageTerm and validated it using a set of phages with well-established packaging mechanisms representative of the termini diversity, i.e. 5′cos (Lambda), 3′cos (HK97), pac (P1), headful without a pac site (T4), DTR (T7) and host fragment (Mu). In addition, we determined the termini of nine Clostridium difficile phages and six phages whose sequences were retrieved from the Sequence Read Archive. PhageTerm is freely available (https://sourceforge.net/projects/phageterm), as a Galaxy ToolShed and on a Galaxy-based server (https://galaxy.pasteur.fr).
Decadal trends in Red Sea maximum surface temperature
Authors: Chaidez V. , Dreano D. , Agusti S. , Duarte C. M. , Hoteit I. 
Published: August 2017

AbstractOcean warming is a major consequence of climate change, with the surface of the ocean having warmed by 0.11 °C decade−1 over the last 50 years and is estimated to continue to warm by an additional 0.6 – 2.0 °C before the end of the century1. However, there is considerable variability in the rates experienced by different ocean regions, so understanding regional trends is important to inform on possible stresses for marine organisms, particularly in warm seas where organisms may be already operating in the high end of their thermal tolerance. Although the Red Sea is one of the warmest ecosystems on earth, its historical warming trends and thermal evolution remain largely understudied. We characterized the Red Sea’s thermal regimes at the basin scale, with a focus on the spatial distribution and changes over time of sea surface temperature maxima, using remotely sensed sea surface temperature data from 1982 – 2015. The overall rate of warming for the Red Sea is 0.17 ± 0.07 °C decade−1, while the northern Red Sea is warming between 0.40 and 0.45 °C decade−1, all exceeding the global rate. Our findings show that the Red Sea is fast warming, which may in the future challenge its organisms and communities.
Anomalous in situ Activation of Carbon-Supported Ni2P Nanoparticles for Oxygen Evolving Electrocatalysis in Alkaline Media
Authors: Chung Young-Hoon , Jang Injoon , Jang Jue-Hyuk , Park Hyun S. , Ham Hyung Chul , Jang Jong Hyun , Lee Yong-Kul , Yoo Sung Jong 
Published: August 2017

AbstractElectrochemical water splitting is one of the most promising systems by which to store energy produced from sustainable sources, such as solar and wind energy. Designing robust and stable electrocatalysts is urgently needed because of the relatively sluggish kinetics of the anodic reaction, i.e. the oxygen evolution reaction (OER). In this study, we investigate the anomalous in situ activation behaviour of carbon-supported Ni2P nanoparticles (Ni2P/C) during OER catalysis in alkaline media. The activated Ni2P/C shows an exceptionally high activity and stability under OER conditions in which the overpotential needed to achieve 10 mA cm−2 was reduced from approximately 350 mV to approximately 300 mV after 8,000 cyclic voltammetric scans. In situ and ex situ characterizations indicate that the activity enhancement of Ni2P catalysts is due to a favourable phase transformation of the Ni centre to β-NiOOH, including increases in the active area induced by structural deformation under the OER conditions. These findings provide new insights towards designing transition metal/phosphide-based materials for an efficient water splitting catalyst.
Molecular Cloning and Expression of Osmotin in a Baculovirus-Insect System: Purified Osmotin Mitigates Amyloid-beta Deposition in Neuronal Cells
Authors: Abid Noman Bin , Yoon Gwangho , Kim Myeong Ok 
Published: August 2017

AbstractOsmotin is a pathogenesis-related plant protein, have gained focus of research because of its homology with mammalian adiponectin. The therapeutic properties of osmotin have been explored in recent years as it exhibits neuroprotective effects against amyloid beta-, glutamate- and ethanol-induced synaptic dysfunction and neurodegeneration. In the present study, the full-length gene of the tobacco plant osmotin was cloned and expressed in the Sf9 insect cell line using the baculovirus expression system. In vitro analysis of purified Osmotin protein showed excellent cell viability, p-AMPK activation and a reduction in amyloid-beta deposition. Immunofluorescent analysis showed significant reduction in amyloid beta deposition in APP over expressing neuronal cells. Osmotin inhibited amyloid beta deposition by influencing expression of APP processing genes including APP, ADAM 10 and BACE 1. Purified Osmotin showed reduction in amyloid beta deposition in different in vitro models as well. Osmotin showed similar mechanism when compared with mammalian adiponectin in different in vitro models. The present method will be an excellent approach for the efficient and cost-effective production of the functional protein to be utilized for therapeutic purposes. Reduction in amyloid beta deposition by activation of p-AMPK influencing APP processing genes makes osmotin a potent therapeutic candidate for neurodegenerative diseases.
Injectable Phosphorescence-based Oxygen Biosensors Identify Post Ischemic Reactive Hyperoxia
Authors: Chien Jennifer S. , Mohammed Mahmoud , Eldik Hysem , Ibrahim Mohamed M. , Martinez Jeremy , Nichols Scott P. , Wisniewski Natalie , Klitzman Bruce 
Published: August 2017

AbstractNovel injectable biosensors were used to measure interstitial oxygenation before, during, and after transient ischemia. It is well known that reactive hyperemia occurs following a period of ischemia. However, increased blood flow does not necessarily mean increased oxygen tension in the tissue. Therefore, the purpose of this study was to test the hypothesis that tissue reactive hyperoxia occurs following release of hind-limb tourniquet occlusions. Rats were injected with bilateral hind-limb biosensors and were simultaneously subjected to a unilateral femoral vessel ligation. After approximately one and three months, the rats underwent a series of oxygenation challenges, including transient hind-limb tourniquet occlusion. Along with the biosensors, near infrared spectroscopy was used to measure percent oxyhemoglobin in capillaries and laser Doppler flowmetry was used to measure blood flow. Post-occlusion reactive hyperemia was observed. It was accompanied by tissue reactive hyperoxia, affirming that the post-occlusion oxygen supply must have exceeded the expected increased oxygen consumption. The measurement of the physiologic phenomenon of reactive hyperoxia could prove clinically beneficial for both diagnosis and optimizing therapy.
Evolutionary mechanisms of runaway chromosome number change in Agrodiaetus butterflies
Authors: Vershinina Alisa O. , Lukhtanov Vladimir A. 
Published: August 2017

AbstractDespite predictions of the classic, hybrid-sterility model of chromosomal speciation, some organisms demonstrate high rate of karyotype evolution. This rate is especially impressive in Agrodiaetus butterflies that rapidly evolved the greatest chromosome number diversity known in animal kingdom within a single subgenus. Here we analyzed karyotype evolution in Agrodiaetus using phylogenetic comparative methods. We found that chromosome numbers possess a strong phylogenetic signal. This disproves the chromosome megaevolution model that proposes multiple chromosome rearrangements to accumulate independently in each of closely related species. We found that Brownian motion gives a more adequate description of observed trait changes than Ornstein-Uhlenbeck model. This indicates that chromosome numbers evolve via random walk along branches of the phylogeny. We discovered a correlation between karyotype changes and phylogeny branch lengths. This gradual pattern is inconsistent with the hybrid-sterility model which, due to association of major chromosome changes with cladogenetic events, predicts a high degree of punctualism in karyotype evolution. Thus, low underdominace of chromosomal rearrangements and/or prevalence of the recombination-suppression model over the hybrid-sterility model of chromosome speciation are the most common engines of the runaway chromosome number change observed.
Development of a Primary Human Co-Culture Model of Inflamed Airway Mucosa
Authors: Yonker Lael M. , Mou Hongmei , Chu Kengyeh K. , Pazos Michael A. , Leung Huimin , Cui Dongyao , Ryu Jinhyeob , Hibbler Rhianna M. , Eaton Alexander D. , Ford Tim N. , Falck J. R. , Kinane T. Bernard , Tearney Guillermo J. , Rajagopal Jayaraj , Hurley Bryan P. 
Published: August 2017

AbstractNeutrophil breach of the mucosal surface is a common pathological consequence of infection. We present an advanced co-culture model to explore neutrophil transepithelial migration utilizing airway mucosal barriers differentiated from primary human airway basal cells and examined by advanced imaging. Human airway basal cells were differentiated and cultured at air-liquid interface (ALI) on the underside of 3 µm pore-sized transwells, compatible with the study of transmigrating neutrophils. Inverted ALIs exhibit beating cilia and mucus production, consistent with conventional ALIs, as visualized by micro-optical coherence tomography (µOCT). µOCT is a recently developed imaging modality with the capacity for real time two- and three-dimensional analysis of cellular events in marked detail, including neutrophil transmigratory dynamics. Further, the newly devised and imaged primary co-culture model recapitulates key molecular mechanisms that underlie bacteria-induced neutrophil transepithelial migration previously characterized using cell line-based models. Neutrophils respond to imposed chemotactic gradients, and migrate in response to Pseudomonas aeruginosa infection of primary ALI barriers through a hepoxilin A3-directed mechanism. This primary cell-based co-culture system combined with µOCT imaging offers significant opportunity to probe, in great detail, micro-anatomical and mechanistic features of bacteria-induced neutrophil transepithelial migration and other important immunological and physiological processes at the mucosal surface.