bluuebunny/crossref_metadata_2025_split huggingface dataset:
Inflammatory pain control by blocking oxidized phospholipid-mediated TRP channel activation
Authors: Oehler Beatrice , Kistner Katrin , Martin Corinna , Schiller Jürgen , Mayer Rafaela , Mohammadi Milad , Sauer Reine-Solange , Filipovic Milos R. , Nieto Francisco R. , Kloka Jan , Pflücke Diana , Hill Kerstin , Schaefer Michael , Malcangio Marzia , Reeh Peter W. , Brack Alexander , Blum Robert , Rittner Heike L. 
Published: July 2017

AbstractPhospholipids occurring in cell membranes and lipoproteins are converted into oxidized phospholipids (OxPL) by oxidative stress promoting atherosclerotic plaque formation. Here, OxPL were characterized as novel targets in acute and chronic inflammatory pain. Oxidized 1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphocholine (OxPAPC) and its derivatives were identified in inflamed tissue by mass spectrometry and binding assays. They elicited calcium influx, hyperalgesia and induced pro-nociceptive peptide release. Genetic, pharmacological and mass spectrometric evidence in vivo as well as in vitro confirmed the role of transient receptor potential channels (TRPA1 and TRPV1) as OxPAPC targets. Treatment with the monoclonal antibody E06 or with apolipoprotein A-I mimetic peptide D-4F, capturing OxPAPC in atherosclerosis, prevented inflammatory hyperalgesia, and in vitro TRPA1 activation. Administration of D-4F or E06 to rats profoundly ameliorated mechanical hyperalgesia and inflammation in collagen-induced arthritis. These data reveal a clinically relevant role for OxPAPC in inflammation offering therapy for acute and chronic inflammatory pain treatment by scavenging OxPAPC.
Effects of dietary supplementation with two alternatives to antibiotics on intestinal microbiota of preweaned calves challenged with Escherichia coli K99
Authors: Bi Yanliang , Yang Chuntao , Diao Qiyu , Tu Yan 
Published: July 2017

AbstractThe aim of this study was to investigate the effects of dietary supplementation with two alternatives to antibiotics (Candida tropicalis and mulberry leaf flavonoids) on intestinal microbiota of preweaned calves challenged with Escherichia coli K99. Sixty Holstein calves were randomly assigned to 5 treatments: fed a basal diet (N-CON); fed a basal diet and challenged with E.coli K99 (P-CON); fed a basal diet supplemented with C.tropicalis (CT), mulberry leaf flavonoids (MLF), and the combination of the two additives (CM), respectively, and challenged with E.coli K99. The MLF and CM groups had significantly higher average daily grain and feed efficiency, and significantly lower fecal scores compared with the P-CON group after E. coli K99 challenge. The supplementation groups increased the relative abundance, at the phylum level, of Bacteroidetes and Proteobacteria, whereas at the genus level, they increased the relative abundance of Prevotella, Lactobacillus, and Enterococcus. Quantitative PCR revealed that the CT, MLF, and CM groups had significantly lower copy numbers of E.coli K99 compared with the P-CON group. The CT, MLF, and CM treatments reduce days of diarrhea, improve intestinal health, and beneficially manipulate the intestinal microbiota in preweaned calves.
Defying Dissolution: Discovery of Deep-Sea Scleractinian Coral Reefs in the North Pacific
Authors: Baco Amy R. , Morgan Nicole , Roark E. Brendan , Silva Mauricio , Shamberger Kathryn E. F. , Miller Kelci 
Published: July 2017

AbstractDeep-sea scleractinian coral reefs are protected ecologically and biologically significant areas that support global fisheries. The absence of observations of deep-sea scleractinian reefs in the Central and Northeast Pacific, combined with the shallow aragonite saturation horizon (ASH) and high carbonate dissolution rates there, fueled the hypothesis that reef formation in the North Pacific was improbable. Despite this, we report the discovery of live scleractinian reefs on six seamounts of the Northwestern Hawaiian Islands and Emperor Seamount Chain at depths of 535–732 m and aragonite saturation state (Ωarag) values of 0.71–1.33. Although the ASH becomes deeper moving northwest along the chains, the depth distribution of the reefs becomes shallower, suggesting the ASH is having little influence on their distribution. Higher chlorophyll moving to the northwest may partially explain the geographic distribution of the reefs. Principle Components Analysis suggests that currents are also an important factor in their distribution, but neither chlorophyll nor the available current data can explain the unexpected depth distribution. Further environmental data is needed to elucidate the reason for the distribution of these reefs. The discovery of reef-forming scleractinians in this region is of concern because a number of the sites occur on seamounts with active trawl fisheries.
Stability of buried carbon in deep-ploughed forest and cropland soils - implications for carbon stocks
Authors: Alcántara Viridiana , Don Axel , Vesterdal Lars , Well Reinhard , Nieder Rolf 
Published: July 2017

AbstractAccumulation of soil organic carbon (SOC) may play a key role in climate change mitigation and adaptation. In particular, subsoil provides a great potential for additional SOC storage due to the assumed higher stability of subsoil SOC. The fastest way in which SOC reaches the subsoil is via burial, e.g. via erosion or deep ploughing. We assessed the effect of active SOC burial through deep ploughing on long-term SOC stocks and stability in forest and cropland subsoil. After 25–48 years, deep-ploughed subsoil contained significantly more SOC than reference subsoils, in both forest soil (+48%) and cropland (+67%). However, total SOC stocks down to 100 cm in deep-ploughed soil were greater than in reference soil only in cropland, and not in forests. This was explained by slower SOC accumulation in topsoil of deep-ploughed forest soils. Buried SOC was on average 32% more stable than reference SOC, as revealed by long-term incubation. Moreover, buried subsoil SOC had higher apparent radiocarbon ages indicating that it is largely isolated from exchange with atmospheric CO2. We concluded that deep ploughing increased subsoil SOC storage and that the higher subsoil SOC stability is not only a result of selective preservation of more stable SOC fractions.
Gene-wide Association Study Reveals RNF122 Ubiquitin Ligase as a Novel Susceptibility Gene for Attention Deficit Hyperactivity Disorder
Authors: Garcia-Martínez Iris , Sánchez-Mora Cristina , Soler Artigas María , Rovira Paula , Pagerols Mireia , Corrales Montse , Calvo-Sánchez Eva , Richarte Vanesa , Bustamante Mariona , Sunyer Jordi , Cormand Bru , Casas Miquel , Ramos-Quiroga Josep Antoni , Ribasés Marta 
Published: July 2017

AbstractAttention Deficit Hyperactivity Disorder (ADHD) is a common childhood-onset neurodevelopmental condition characterized by pervasive impairment of attention, hyperactivity, and/or impulsivity that can persist into adulthood. The aetiology of ADHD is complex and multifactorial and, despite the wealth of evidence for its high heritability, genetic studies have provided modest evidence for the involvement of specific genes and have failed to identify consistent and replicable results. Due to the lack of robust findings, we performed gene-wide and pathway enrichment analyses using pre-existing GWAS data from 607 persistent ADHD subjects and 584 controls, produced by our group. Subsequently, expression profiles of genes surpassing a follow-up threshold of P-value < 1e-03 in the gene-wide analyses were tested in peripheral blood mononucleated cells (PBMCs) of 45 medication-naive adults with ADHD and 39 healthy unrelated controls. We found preliminary evidence for genetic association betweenRNF122and ADHD and for its overexpression in adults with ADHD.RNF122encodes for an E3 ubiquitin ligase involved in the proteasome-mediated processing, trafficking, and degradation of proteins that acts as an essential mediator of the substrate specificity of ubiquitin ligation. Thus, our findings support previous data that place the ubiquitin-proteasome system as a promising candidate for its involvement in the aetiology of ADHD.
Lattice Thermal Conductivity of MgSiO3 Perovskite from First Principles
Authors: Ghaderi Nahid , Zhang Dong-Bo , Zhang Huai , Xian Jiawei , Wentzcovitch Renata M. , Sun Tao 
Published: July 2017

AbstractWe investigate lattice thermal conductivity κ of MgSiO3 perovskite (pv) by ab initio lattice dynamics calculations combined with exact solution of linearized phonon Boltzmann equation. At room temperature, κ of pristine MgSiO3 pv is found to be 10.7 W/(m · K) at 0 GPa. It increases linearly with pressure and reaches 59.2 W/(m · K) at 100 GPa. These values are close to multi-anvil press measurements whereas about twice as large as those from diamond anvil cell experiments. The increase of k with pressure is attributed to the squeeze of weighted phase-spaces phonons get emitted or absorbed. Moreover, we find κ exhibits noticeable anisotropy, with κ
zz
being the largest component and $$({{\boldsymbol{\kappa }}}_{{\rm{\max }}}-{{\boldsymbol{\kappa }}}_{{\rm{\min }}})/\bar{{\boldsymbol{\kappa }}}$$
(

κ

max

−

κ

min

)
/

κ

¯

being about 25%. Such extent of anisotropy is comparable to those of upper mantle minerals such as olivine and enstatite. By analyzing phonon mean free paths and lifetimes, we further show that the weak temperature dependence of κ observed in experiments should not be caused by phonons reaching ‘minimum’ mean free paths. These results clarify the microscopic mechanism of thermal transport in MgSiO3 pv, and provide reference data for understanding heat conduction in the Earth’s deep interior.
Dramatic increases in blood glutamate concentrations are closely related to traumatic brain injury-induced acute lung injury
Authors: Bai Wei , Zhu Wan-Li , Ning Ya-Lei , Li Ping , Zhao Yan , Yang Nan , Chen Xing , Jiang Yu-Lin , Yang Wen-Qun , Jiang Dong-Po , Chen Li-Yong , Zhou Yuan-Guo 
Published: July 2017

AbstractTraumatic brain injury-induced acute lung injury (TBI-ALI) is a serious complication after brain injury for which predictive factors are lacking. In this study, we found significantly elevated blood glutamate concentrations in patients with TBI or multiple peripheral trauma (MPT), and patients with more severe injuries showed higher blood glutamate concentrations and longer durations of elevated levels. Although the increase in amplitude was similar between the two groups, the duration was longer in the patients with TBI. There were no significant differences in blood glutamate concentrations in the patients with MPT with regard to ALI status, but the blood glutamate levels were significantly higher in the patients with TBI-ALI than in those without ALI. Moreover, compared to patients without ALI, patients with TBI showed a clearly enhanced inflammatory response that was closely correlated with the blood glutamate levels. The blood glutamate concentration was also found to be a risk factor (adjusted odds ratio, 2.229; 95% CI, 1.082–2.634) and was a better predictor of TBI-ALI than the Glasgow Coma Scale (GCS) score. These results indicated that dramatically increased blood glutamate concentrations were closely related to the occurrence of TBI-ALI and could be used as a predictive marker for “at-risk” patients.
Primary surface rupture of the 1950 Tibet-Assam great earthquake along the eastern Himalayan front, India
Authors: Priyanka Rao Singh , Jayangondaperumal R. , Pandey Arjun , Mishra Rajeeb Lochan , Singh Ishwar , Bhushan Ravi , Srivastava Pradeep , Ramachandran S. , Shah Chinmay , Kedia Sumita , Sharma Arun Kumar , Bhat Gulam Rasool 
Published: July 2017

AbstractThe pattern of strain accumulation and its release during earthquakes along the eastern Himalayan syntaxis is unclear due to its structural complexity and lack of primary surface signatures associated with large-to-great earthquakes. This led to a consensus that these earthquakes occurred on blind faults. Toward understanding this issue, palaeoseismic trenching was conducted across a ~3.1 m high fault scarp preserved along the mountain front at Pasighat (95.33°E, 28.07°N). Multi-proxy radiometric dating employed to the stratigraphic units and detrital charcoals obtained from the trench exposures provide chronological constraint on the discovered palaeoearthquake surface rupture clearly suggesting that the 15th August, 1950 Tibet-Assam earthquake (Mw ~ 8.6) did break the eastern Himalayan front producing a co-seismic slip of 5.5 ± 0.7 meters. This study corroborates the first instance in using post-bomb radiogenic isotopes to help identify an earthquake rupture.
Wider geographic distribution and higher diversity of hexaploids than tetraploids in Carassius species complex reveal recurrent polyploidy effects on adaptive evolution
Authors: Liu Xiao-Li , Jiang Fang-Fang , Wang Zhong-Wei , Li Xi-Yin , Li Zhi , Zhang Xiao-Juan , Chen Fan , Mao Jian-Feng , Zhou Li , Gui Jian-Fang 
Published: July 2017

AbstractPolyploidy roles on adaptive evolution and ecological novelty have been extensively studied in plants but remained unclear in vertebrates owing to the rare polyploidy incidences. Here, a huge number of 3105 specimens in Carassius species complex including 2211 hexaploids and 894 tetraploids were sampled from 34 locations through mainland China. And hexaploids had wider geographic distribution than tetraploids especially in the areas with high altitude, high latitude and low annual precipitation. Then, an approximate 1050 bp transferrin (tf) fragments were amplified from all the samples, and 526 tf alleles were identified from a total of 37260 sequences at last. Intriguingly, higher nucleotide diversity of tf alleles in hexaploids than in tetraploids was revealed. Moreover, via phylogenetic analysis of tf alleles, potential origin center of Carassius species complex was deduced to be Yangtze River basin and hexaploids should undergo multiple independent polyploidy origins from sympatric tetraploids. These findings indicate that the hexaploids might possess stronger environmental adaptation and ecological novelty than the tetraploids, which provide an association paradigm of recurrent polyploidy and ecological context in polyploid vertebrates.
TKI-addicted ROS1-rearranged cells are destined to survival or death by the intensity of ROS1 kinase activity
Authors: Ogura Hayato , Nagatake-Kobayashi Yuka , Adachi Jun , Tomonaga Takeshi , Fujita Naoya , Katayama Ryohei 
Published: July 2017

AbstractROS1 rearrangement is observed in 1–2% of non-small cell lung cancers (NSCLC). The ROS1 tyrosine kinase inhibitor (TKI) crizotinib has induced marked tumour shrinkage in ROS1-rearranged cancers. However, emergence of acquired resistance to TKI is inevitable within a few years. Previous findings indicate that cabozantinib overcomes secondary mutation–mediated crizotinib-resistance in ROS1-fusion-positive cells. Here we attempted to establish cabozantinib-resistant cells by N-ethyl-N-nitrosourea mutagenesis screening using CD74-ROS1–expressing Ba/F3 cells. Two resistant cell lines with CD74-ROS1 F2004V or F2075C mutations, which are homologous to ALK F1174 or F1245 mutations, survived in the presence of a low dose of ROS1-TKI. Removal of ROS1-TKI from these TKI-addicted cells induced excessive activation of ROS1 tyrosine kinase followed by apoptosis. We succeeded in recapturing the TKI-addicted phenotype using doxycycline-inducible CD74-ROS1 mutant over-expression in Ba/F3 cells, suggesting that excessive ROS1 oncogenic signaling itself induced apoptosis instead of cell growth. Phosphoproteomic analysis and high-throughput inhibitor screening revealed that excessive ROS1 signaling in the TKI-addicted cells phosphorylated or activated apoptosis-related molecules such as FAF1 or p38. Collectively, our findings partly clarify molecular mechanisms of excessive ROS1 oncogenic signaling that mediates paradoxical induction of apoptosis.
Tracing the Vedic Saraswati River in the Great Rann of Kachchh
Authors: Khonde Nitesh , Singh Sunil Kumar , Maurya D. M. , Rai Vinai K. , Chamyal L. S. , Giosan Liviu 
Published: July 2017

AbstractThe lost Saraswati River mentioned in the ancient Indian tradition is postulated to have flown independently of the Indus River into the Arabian Sea, perhaps along courses of now defunct rivers such as Ghaggar, Hakra and Nara. The persistence of such a river during the Harappan Bronze Age and the Iron Age Vedic period is strongly debated. We drilled in the Great Rann of Kachchh (Kutch), an infilled gulf of the Arabian Sea, which must have received input from the Saraswati, if active. Nd and Sr isotopic measurements suggest that a distinct source may have been present before 10 ka. Later in Holocene, under a drying climate, sediments from the Thar Desert probably choked the signature of an independent Saraswati-like river. Alternatively, without excluding a Saraswati-like secondary source, the Indus and the Thar were the dominant sources throughout the post-glacial history of the GRK. Indus-derived sediment accelerated the infilling of GRK after ~6 ka when the Indus delta started to grow. Until its complete infilling few centuries ago, freshwater input from the Indus, and perhaps from the Ghaggar-Hakra-Nara, probably sustained a productive marine environment as well as navigability toward old coastal Harappan and historic towns in the region.
The LRRK2 G2385R variant is a partial loss-of-function mutation that affects synaptic vesicle trafficking through altered protein interactions
Authors: Carrion Maria Dolores Perez , Marsicano Silvia , Daniele Federica , Marte Antonella , Pischedda Francesca , Di Cairano Eliana , Piovesana Ester , von Zweydorf Felix , Kremmer Elisabeth , Gloeckner Christian Johannes , Onofri Franco , Perego Carla , Piccoli Giovanni 
Published: July 2017

AbstractMutations in the Leucine-rich repeat kinase 2 gene (LRRK2) are associated with familial Parkinson’s disease (PD). LRRK2 protein contains several functional domains, including protein-protein interaction domains at its N- and C-termini. In this study, we analyzed the functional features attributed to LRRK2 by its N- and C-terminal domains. We combined TIRF microscopy and synaptopHluorin assay to visualize synaptic vesicle trafficking. We found that N- and C-terminal domains have opposite impact on synaptic vesicle dynamics. Biochemical analysis demonstrated that different proteins are bound at the two extremities, namely β3-Cav2.1 at N-terminus part and β-Actin and Synapsin I at C-terminus domain. A sequence variant (G2385R) harboured within the C-terminal WD40 domain increases the risk for PD. Complementary biochemical and imaging approaches revealed that the G2385R variant alters strength and quality of LRRK2 interactions and increases fusion of synaptic vesicles. Our data suggest that the G2385R variant behaves like a loss-of-function mutation that mimics activity-driven events. Impaired scaffolding capabilities of mutant LRRK2 resulting in perturbed vesicular trafficking may arise as a common pathophysiological denominator through which different LRRK2 pathological mutations cause disease.
Naja sputatrix Venom Preconditioning Attenuates Neuroinflammation in a Rat Model of Surgical Brain Injury via PLA2/5-LOX/LTB4 Cascade Activation
Authors: Wang Yuechun , Sherchan Prativa , Huang Lei , Akyol Onat , McBride Devin W. , Zhang John H. 
Published: July 2017

Abstract
Inflammatory preconditioning is a mechanism in which exposure to small doses of inflammatory stimuli prepares the body against future massive insult by activating endogenous protective responses. Phospholipase A2/5-lipoxygenase/leukotriene-B4 (PLA2/5-LOX/LTB4) axis is an important inflammatory signaling pathway. Naja sputatrix (Malayan spitting cobra) venom contains 15% secretory PLA2 of its dry weight. We investigated if Naja sputatrix venom preconditioning (VPC) reduces surgical brain injury (SBI)-induced neuroinflammation via activating PLA2/5-LOX/LTB4 cascade using a partial frontal lobe resection SBI rat model. Naja sputatrix venom sublethal dose was injected subcutaneously for 3 consecutive days prior to SBI. We observed that VPC reduced brain edema and improved neurological function 24 h and 72 h after SBI. The expression of pro-inflammatory mediators in peri-resection brain tissue was reduced with VPC. Administration of Manoalide, a PLA2 inhibitor or Zileuton, a 5-LOX inhibitor with VPC reversed the protective effects of VPC against neuroinflammation. The current VPC regime induced local skin inflammatory reaction limited to subcutaneous injection site and elicited no other toxic effects. Our findings suggest that VPC reduces neuroinflammation and improves outcomes after SBI by activating PLA2/5-LOX/LTB4 cascade. VPC may be beneficial to reduce post-operative neuroinflammatory complications after brain surgeries.
Evaluation and diagnostic potential of circulating extracellular vesicle-associated microRNAs in adrenocortical tumors
Authors: Perge Pál , Butz Henriett , Pezzani Raffaele , Bancos Irina , Nagy Zoltán , Pálóczi Krisztina , Nyírő Gábor , Decmann Ábel , Pap Erna , Luconi Michaela , Mannelli Massimo , Buzás Edit I. , Tóth Miklós , Boscaro Marco , Patócs Attila , Igaz Peter 
Published: July 2017

AbstractThere is no available blood marker for the preoperative diagnosis of adrenocortical malignancy. The objective of this study was to investigate the expression of extracellular vesicle-associated microRNAs and their diagnostic potential in plasma samples of patients suffering from adrenocortical tumors. Extracellular vesicles were isolated either by using Total Exosome Isolation Kit or by differential centrifugation/ultracentrifugation. Preoperative plasma extracellular vesicle samples of 6 adrenocortical adenomas (ACA) and 6 histologically verified adrenocortical cancer (ACC) were first screened by Taqman Human Microarray A-cards. Based on the results of screening, two miRNAs were selected and validated by targeted quantitative real-time PCR. The validation cohort included 18 ACAs and 16 ACCs. Beside RNA analysis, extracellular vesicle preparations were also assessed by transmission electron microscopy, flow cytometry and dynamic light scattering. Significant overexpression of hsa-miR-101 and hsa-miR-483-5p in ACC relative to ACA samples has been validated. Receiver operator characteristics of data revealed dCT
hsa-miR-483-5p
normalized to cel-miR-39 to have the highest diagnostic accuracy (area under curve 0.965), the sensitivity and the specifity were 87.5 and 94.44, respectively. Extracellular vesicle-associated hsa-miR-483-5p thus appears to be a promising minimally invasive biomarker in the preoperative diagnosis of ACC but needs further validation in larger cohorts of patients.