bluuebunny/crossref_metadata_2025_split huggingface dataset:
Cytokine Patterns in Healthy Adolescent Girls: Heterogeneity Captured by Variable and Person-Centered Statistical Strategies
Authors: Dorn Lorah D. , Gayles Jochebed G. , Engeland Christopher G. , Houts Renate , Cizza Giovanni , Denson Lee A. 
Published: May 2016

ABSTRACT

Background
Little is known about variation in individual cytokines/cytokine profiles for a large healthy, pediatric population. When cytokines in a healthy group are not abnormally high as in a disease state, it is challenging to determine appropriate statistical strategies. The aims of the study were (1) to describe variation among cytokine concentrations and profiles in healthy adolescent girls, (2) to illustrate utility of data reduction approaches novel to cytokine research, (variable-centered [principal factor analysis, PFA], person-centered [latent profile analysis, LPA]), and (3) to demonstrate utility of such methods in linking cytokine profiles to health outcomes (e.g., depressive, anxiety symptoms).

Method
Serum was analyzed for 13 cytokines representing adaptive and innate immune responses in 262 girls (age = 11, 13, 15, and 17 years).

Results
There was great variation in cytokine concentrations. PFA revealed a four-factor solution explaining 73.13% of the shared variance among 13 cytokines (e.g., factor 1 included interleukin [IL]-4, IL-13, IL-5, interferon gamma; 26.65% of the shared variance). The LPA supported classifying girls into subgroups characterized by “high overall” (7.3% of sample), “high adaptive” (26.7%), “high innate” (21%), or “low overall” (45%) cytokine levels. Factors and profiles were useful in describing individual differences in depressive/anxiety symptoms (e.g., factor 1 positively associated with depressive symptoms but negatively with trait anxiety; increased depressive symptoms or trait anxiety was associated with greater likelihood of being in the “high adaptive” group).

Conclusions
Healthy girls showed differences in cytokine levels and patterns of variation and important associations with psychological variables. PFA and LPA offer novel approaches useful for examining cytokine panels in healthy populations.
Macrophage Superoxide Anion Production in Essential Hypertension: Associations With Biological and Psychological Cardiovascular Risk Factors
Authors: Zuccarella-Hackl Claudia , von Känel Roland , Thomas Livia , Hauser Mark , Kuebler Ulrike , Widmer Hans Rudolf , Wirtz Petra H. 
Published: May 2016

ABSTRACT

Objective
Essential hypertension is an important risk factor for coronary artery disease and its underlying process atherosclerosis, but involved mechanisms are not fully understood. Both macrophages and superoxide anions have been proposed to play a major role in the pathogenesis of atherosclerosis. In the present study, we investigated whether macrophages of individuals with hypertension show higher nicotinamide adenine dinucleotide phosphate oxidase–derived superoxide anion production compared with normotensive individuals. Furthermore, we examined associations between macrophage superoxide anion production and the psychological factors depression and chronic stress independent from hypertension status.

Methods
We studied 30 hypertensive (mean [standard deviation] = 48.7 [2.4] years) and 30 age-matched normotensive men (mean [standard deviation] = 48.6 [2.4] years). We assessed macrophage superoxide anion production using the WST-1 assay. The assay is based on the chemical reduction of the cell-impermeative tetrazolium salt WST-1 by superoxide anions that are produced by activated human ex vivo isolated monocyte-derived macrophages. We further evaluated whether chronic stress or depressive symptom severity was associated with macrophage superoxide anion production. All analyses were adjusted for potential confounders.

Results
Individuals with hypertension showed higher superoxide anion production compared with normotensive individuals (F(1,58) = 11.56, p = .001). Complementary analyses using mean arterial blood pressure as a continuous measure revealed that higher mean arterial pressure correlated significantly with higher WST-1 reduction (ß = .38, p = .003, ΔR
2 = .145). These results remained significant when controlling for potential confounding influences. Chronic stress was related to higher WST-1 reduction scores, but this association was not statistically significant (ß = .24, p = .067, ΔR
2 = .053); depression levels were not significantly associated with WST-1 reduction scores (p = .24).

Conclusions
Our results indicate higher macrophage superoxide anion production in individuals with hypertension compared with normotensive individuals. This may suggest a mechanism underlying cardiovascular risk with hypertension.
A Stepwise Psychotherapy Intervention for Reducing Risk in Coronary Artery Disease (SPIRR-CAD): Results of an Observer-Blinded, Multicenter, Randomized Trial in Depressed Patients With Coronary Artery Disease
Authors: Herrmann-Lingen Christoph , Beutel Manfred E. , Bosbach Alexandra , Deter Hans-Christian , Fritzsche Kurt , Hellmich Martin , Jordan Jochen , Jünger Jana , Ladwig Karl-Heinz , Michal Matthias , Petrowski Katja , Pieske Burkert , Ronel Joram , Söllner Wolfgang , Stöhr Andreas , Weber Cora , de Zwaan Martina , Albus Christian 
Published: May 2016

ABSTRACT

Background
Depression predicts adverse prognosis in patients with coronary artery disease (CAD), but previous treatment trials yielded mixed results. We tested the hypothesis that stepwise psychotherapy improves depressive symptoms more than simple information.

Methods
In a multicenter trial, we randomized 570 CAD patients scoring higher than 7 on the Hospital Anxiety and Depression Scale-depression subscale to usual care plus either one information session (UC-IS) or stepwise psychotherapy (UC-PT). UC-PT patients received three individual psychotherapy sessions. Those still depressed were offered group psychotherapy (25 sessions). The primary outcome was changed in the Hospital Anxiety and Depression Scale-depression scores from baseline to 18 months. Preplanned subgroup analyses examined whether treatment responses differed by patients' sex and personality factors (Type D).

Results
The mean (standard deviation) depression scores declined from 10.4 (2.5) to 8.7 (4.1) at 18 months in UC-PT and from 10.4 (2.5) to 8.9 (3.9) in UC-IS (both p < .001). There was no significant group difference in change of depressive symptoms (group-by-time effect, p = .90). Preplanned subgroup analyses revealed no differences in treatment effects between men versus women (p
treatment-by-sex interaction = .799) but a significant treatment-by-Type D interaction on change in depressive symptoms (p = .026) with a trend for stronger improvement with UC-PT than UC-IS in Type D patients (n = 341, p = .057) and no such difference in improvement in patients without Type D (n = 227, p = .54).

Conclusions
Stepwise psychotherapy failed to improve depressive symptoms in CAD patients more than UC-IS. The intervention might be beneficial for depressed CAD patients with Type D personality. However, this finding requires further study.

Trial Registration:
www.clinicaltrials.gov
NCT00705965; www.isrctn.com
ISRCTN76240576.
Hepatitis C following liver transplantation: current approach and future research opportunities
Authors: Cosar Arif M. , Durand Christine M. , Cameron Andrew M. , Gurakar Ahmet 
Published: May 2016

Purpose of review
The treatment of hepatitis C virus infection (HCV) in liver transplant recipients was very limited until direct-acting antivirals became widely available. We review the current approach to HCV treatment following liver transplantation and future research opportunities.

Recent findings
Current treatment of HCV infection with all oral new direct-acting antivirals in the postliver transplant setting is easier, shorter, tolerable, and more effective with high-sustained virological response rates. However, some challenges remain, including the optimal timing of therapy, drug–drug interactions, renal insufficiency, and HIV coinfection.

Summary
Patients with recurrent HCV following liver transplant will significantly benefit from all oral new direct acting antivirals. Ongoing studies will determine the optimal timing and combination in this unique population.
Treatment of mucormycosis in transplant patients: role of surgery and of old and new antifungal agents
Authors: Chitasombat Maria N. , Kontoyiannis Dimitrios P. 
Published: May 2016

Purpose of review
Mucormycosis is an opportunistic mold infection whose management is difficult, as there is a paucity of evidence-based data. We summarize the latest advances in diagnosis and management of mucormycosis in transplant recipients.

Recent findings
There is promise for improvement in nonculture-based diagnostics with new biomarkers of Mucorales DNA that can be used for early diagnosis, and monitoring of response. Antifungal treatment consists of high-dose lipid formulations of amphotericin B or isavuconazole as the first-line therapy and posaconazole as salvage therapy. The new, pharmacokinetically more reliable formulations of posaconazole (intravenous, extended-release tablets) are welcomed improvements. Yet, the role of combination therapy is still uncertain. Surgery had a significant role in selected cases, such as in patients with rhinosinusitis form of mucormycosis, which nowadays can be performed with minimal invasive technique.

Summary
Mucormycosis remain a life-threatening opportunistic mold infection among transplant patients. Early diagnosis, prompt treatment with effective antifungals in combination with surgery if feasible is essential. Immune adjunct therapy and improvement of early diagnostics are important areas for future research. There are good prospects of progress in diagnostics and management of mucormycosis in transplant patients.
Three-Dimensional CAIPIRINHA SPACE TSE for 5-Minute High-Resolution MRI of the Knee
Authors: Fritz Jan , Fritz Benjamin , Thawait Gaurav G. , Meyer Heiko , Gilson Wesley D. , Raithel Esther 
Published: May 2016

Objective
The aim of this study was to prospectively test the hypothesis that a 2-dimensional (2D) CAIPIRINHA (controlled aliasing in parallel imaging results in higher acceleration) sampling pattern facilitates 5-minute high spatial resolution 3-dimensional (3D) sampling perfection with application optimized contrast using different flip angle evolutions (SPACE) magnetic resonance imaging (MRI) of the knee with image quality similar or better than current 2D turbo spin echo (TSE) and 3D SPACE standards.

Materials and Methods
The study was approved by our institutional review board. Twenty asymptomatic subjects (12 men, 8 women; mean age, 42 years; age range, 24–65 years) underwent 3 T MRI of the knee. A 4-fold accelerated 3D SPACE TSE prototype with 2D CAIPIRINHA sampling pattern and 5-minute acquisition time was compared with commercially available 2-fold and 4-fold accelerated 3D SPACE and 2D TSE pulse sequences with acquisition times of 11 minutes and 15 seconds, 6 minutes and 30 seconds, as well as 9 minutes and 48 seconds, respectively. Outcome variables included image quality, anatomic visibility, signal-to-noise ratio (SNR), and contrast-to-noise ratio (CNR). Statistical analysis included Friedman, repeated measures analysis of variances, and Cohen's weighted κ tests. Bonferroni-corrected P values of 0.005 and less were considered statistically significant.

Results
Overall, image quality, visibility of anatomic structures, SNR, and CNR of 3D CAIPIRINHA SPACE were statistically similar to 2-fold accelerated 3D SPACE and significantly better than 4-fold accelerated 3D SPACE, which exhibited degrading parallel imaging artifacts. Compared with 2.5-mm 2D TSE images, 0.5-mm 3D CAIPIRINHA SPACE images showed statistically similar good edge sharpness and very good contrast resolution, and significantly less partial volume as well as absent chemical shift and pulsatile flow artifacts. Visibility of menisci, anterior cruciate ligament, posterior cruciate ligament, medial collateral ligament, and lateral collateral ligament was good to very good on 0.5-mm 3D CAIPIRINHA SPACE images as compared with good on 2.5-mm 2D TSE image (P < 0.005). The SNR of fat, fluid, and cartilage as well as CNR between cartilage, fluid, fat, posterior cruciate ligament, and menisci were minimally higher on 2.5-mm 2D TSE image (P < 0.005). Image quality, visibility of anatomic structures, SNR, and CNR of 2.5-mm 3D CAIPIRINHA SPACE and 2.5-mm 2D TSE images were good to very good without significant differences.

Conclusions
Three-dimensional SPACE with 2D CAIPIRINHA sampling pattern enables high-quality 3D TSE MRI of the knee at an acquisition time of 5 minutes and image quality, visibility of anatomic structures, SNR, and CNR similar to conventional 3D SPACE and 2D TSE, both of which require approximately 10-minute acquisition times.
Ultrabrief Electroconvulsive Therapy for Mania
Authors: Elias Alby , Ramalingam Jothi , Abidi Nobia , Thangapandian Sathish , Bhat Ravi 
Published: May 2016

Abstract
Electroconvulsive therapy (ECT) is an effective treatment of mania. Ultrabrief ECT is a novel modality that is associated with fewer cognitive adverse effects than the standard pulse width brief pulse ECT. It has been well studied in depression. However, its use in mania is not yet known. Following a retrospective chart view, we report a small sample of patients who had Right Unilateral Ultrabrief ECT (RUB-ECT) for mania. Eleven RUB-ECTs were identified for 9 patients; 72.8% remission rate was observed with RUB-ECT. Two patients required switch into bitemporal ECT in view of minimal clinical response and 1 patient to right unilateral brief pulse ECT because of poor seizure parameters. All patients achieved remission eventually. The possible mechanisms of ECT in mania and clinical implications of ultrabrief ECT are discussed.
Super-sensing technology: industrial applications and future challenges of electrical tomography
Authors: Wei Kent (Hsin-Yu) , Qiu Chang-Hua , Primrose Ken 
Published: May 2016

Electrical tomography is a relatively new imaging technique that can image the distribution of the passive electrical properties of an object. Since electrical tomography technology was proposed in the 1980s, the technique has evolved rapidly because of its low cost, easy scale-up and non-invasive features. The technique itself can be sensitive to all passive electrical properties, such as conductivity, permittivity and permeability. Hence, it has a huge potential to be applied in many applications. Owing to its ill-posed nature and low image resolution, electrical tomography attracts more attention in industrial fields than biomedical fields. In the past decades, there have been many research developments and industrial implementations of electrical tomography; nevertheless, the awareness of this technology in industrial sectors is still one of the biggest limitations for technology implementation. In this paper, the authors have summarized several representative applications that use electrical tomography. Some of the current tomography research activities will also be discussed.
This article is part of the themed issue ‘Supersensing through industrial process tomography’.
Reconstruction of velocity fields in electromagnetic flow tomography
Authors: Lehtikangas Ossi , Karhunen Kimmo , Vauhkonen Marko 
Published: May 2016

Electromagnetic flow meters (EMFMs) are the gold standard in measuring flow velocity in process industry. The flow meters can measure the mean flow velocity of conductive liquids and slurries. A drawback of this approach is that the velocity field cannot be determined. Asymmetric axial flows, often encountered in multiphase flows, pipe elbows and T-junctions, are problematic and can lead to serious systematic errors. Recently, electromagnetic flow tomography (EMFT) has been proposed for measuring velocity fields using several coils and a set of electrodes attached to the surface of the pipe. In this work, a velocity field reconstruction method for EMFT is proposed. The method uses a previously developed finite-element-based computational forward model for computing boundary voltages and a Bayesian framework for inverse problems. In the approach, thevz-component of the velocity field along the longitudinal axis of the pipe is estimated on the pipe cross section. Different asymmetric velocity fields encountered near pipe elbows, solids-in-water flows in inclined pipes and in stratified or multiphase flows are tested. The results suggest that the proposed reconstruction method could be used to estimate velocity fields in complicated pipe flows in which the conventional EMFMs have limited accuracy.This article is part of the themed issue ‘Supersensing through industrial process tomography’.
Sensing flame structure by process tomography
Authors: Liu Jing , Liu Shi , Zhou Wanting , Qi Xin , Lei Jing , Mu Huaiping 
Published: May 2016

Non-intrusive visualization of the structure of flames can offer us many advantages in studying the reaction mechanisms of combustion and observing special distributions of the parameters required for the development of equipment such as jet engines and gas turbines. Process tomography is a relatively new technique for such a task, but is useful owing to its fast speed and capability of detecting signals related to ionizations caused by chemical reactions and thermal effects. Electric capacitance tomography (ECT) is one of the process tomographic techniques. ECT usually comprises a sensor array of electrodes that detect permittivity variations in the measuring zone, a data-logging device and a computer that controls data acquisition and carries out image reconstruction. There have been studies on ECT imaging of flames; however, ECT has not been exploited sufficiently to reveal the inner structure of the flames. In this study, a sensor with planar electrodes is created, and the associated three-dimensional sensitivity map is generated by the finite-element method to detect flame structure. A series of experiments are carried out covering a range of feed rates of fuel and air. Data are collected by the ECT sensor and hardware. The results of the ECT reconstruction show good agreement with actual features, and the structure of the flame is found. This opens up a new route for the study of flames.This article is part of the themed issue ‘Supersensing through industrial process tomography’.
Acute induction of anomalous blood clotting by molecular amplification of highly substoichiometric levels of bacterial lipopolysaccharide (LPS)
Authors: Pretorius Etheresia , Mbotwa Sthembile , Bester Janette , Robinson Christopher , Kell Douglas B. 
Published: May 2016

ABSTRACTIt is well known that a variety of inflammatory diseases are accompanied by hypercoagulability, and a number of more-or-less longer-term signalling pathways have been shown to be involved. In recent work, we have suggested a direct and primary role for bacterial lipopolysaccharide in this hypercoagulability, but it seems never to have been tested directly. Here we show that the addition of tiny concentrations (0.2 ng.L−1) of bacterial lipopolysaccharide (LPS) to both whole blood and platelet-poor plasma of normal, healthy donors leads to marked changes in the nature of the fibrin fibres so formed, as observed by ultrastructural and fluorescence microscopy (the latter implying that the fibrin is actually in an amyloid β-sheet-rich form. They resemble those seen in a number of inflammatory (and also amyloid) diseases, consistent with an involvement of LPS in their aetiology. These changes are mirrored by changes in their viscoelastic properties as measured by thromboelastography. Since the terminal stages of coagulation involve the polymerisation of fibrinogen into fibrin fibres, we tested whether LPS would bind to fibrinogen directly. We demonstrated this using isothermal calorimetry. Finally, we show that these changes in fibre structure are mirrored when the experiment is done simply with purified fibrinogen and thrombin (± 0.2 ng.L−1LPS). This ratio of concentrations of LPS:fibrinogenin vivorepresents a molecular amplification by the LPS of more than 108-fold, a number that is probably unparalleled in biology. The observation of a direct effect of such highly substoichiometric amounts of LPS on both fibrinogen and coagulation can account for the role of very small numbers of dormant bacteria in disease progression, and opens up this process to further mechanistic analysis and possible treatment.Significance statementMost chronic diseases (including those classified as cardiovascular, neurodegenerative, or autoimmune) are accompanied by long-term inflammation. Although typically mediated by ‘inflammatory’ cytokines, the origin of this inflammation is unclear. We have suggested that one explanation is a dormant microbiome that can shed the highly inflammatory lipopolysaccharide LPS. Such inflammatory diseases are also accompanied by a hypercoagulable phenotype. We here showdirectly(using 6 different methods) that very low concentrations of LPS can affect the terminal stages of the coagulation properties of blood and plasma significantly, and that this may be mediated via a direct binding of LPS to a small fraction of fibrinogen monomers as assessed biophysically. Such amplification methods may be of more general significance.
Cassava brown streak virushas a rapidly evolving genome: implications for virus speciation, variability, diagnosis and host resistance
Authors: Alicai Titus , Ndunguru Joseph , Sseruwagi Peter , Tairo Fred , Okao-Okuja Geoffrey , Nanvubya Resty , Kiiza Lilliane , Kubatko Laura , Kehoe Monica A. , Boykin Laura M. 
Published: May 2016

AbstractCassava is a major staple food for about 800 million people in the tropics and subGtropical regions of the world. Production of cassava is significantly hampered by cassava brown streak disease (CBSD), which is caused byCassava brown streak virus(CBSV) andUgandan cassava brown streak virus(UCBSV). The disease is suppressing cassava yields in eastern Africa at an alarming rate. Previous studies have documented that CBSV is more devastating than UCBSV because it more readily infects both susceptible and tolerant cassava cultivars, resulting in greater yield losses. Using whole genome sequences from NGS data, we produced the first coalescentGbased species tree estimate for CBSV and UCBSV. This species framework led to the finding that CBSV has a faster rate of evolution when compared with UCBSV. Furthermore, we have discovered that in CBSV, nonsynonymous substitutions are more predominant than synonymous substitution and occur across the entire genome. All comparative analyses between CBSV and UCBSV presented here suggest that CBSV may be outsmarting the cassava immune system, thus making it more devastating and harder to control.
Bottom-up and top-down computations in high-level visual cortex
Authors: Kay Kendrick N. , Yeatman Jason D. 
Published: May 2016

SummaryThe ability to read a page of text or recognize a person’s face depends on category-selective visual regions in ventral temporal cortex (VTC). To understand how these regions mediate word and face recognition, it is necessary to characterize how stimuli are represented and how this representation is used in the execution of a cognitive task. Here, we show that the response of a category-selective region in VTC can be computed as the degree to which the low-level properties of the stimulus match a category template. Moreover, we show that during execution of a task, the bottom-up representation is scaled by the intraparietal sulcus (IPS), and that the level of IPS engagement reflects the cognitive demands of the task. These results provide a unifying account of neural processing in VTC in the form of a model that addresses both bottom-up and top-down effects and quantitatively predicts VTC responses.