A Lytic Polysaccharide Monooxygenase with Broad Xyloglucan Specificity from the Brown-Rot Fungus Gloeophyllum trabeum and Its Action on Cellulose-Xyloglucan Complexes
Authors: Kojima Yuka , Várnai Anikó , Ishida Takuya , Sunagawa Naoki , Petrovic Dejan M. , Igarashi Kiyohiko , Jellison Jody , Goodell Barry , Alfredsen Gry , Westereng Bjørge , Eijsink Vincent G. H. , Yoshida Makoto 
Published: September 2016

ABSTRACT

Fungi secrete a set of glycoside hydrolases and lytic polysaccharide monooxygenases (LPMOs) to degrade plant polysaccharides. Brown-rot fungi, such as
Gloeophyllum trabeum
, tend to have few LPMOs, and information on these enzymes is scarce. The genome of
G. trabeum
encodes four auxiliary activity 9 (AA9) LPMOs (
Gt
LPMO9s), whose coding sequences were amplified from cDNA. Due to alternative splicing, two variants of
Gt
LPMO9A seem to be produced, a single-domain variant,
Gt
LPMO9A-1, and a longer variant,
Gt
LPMO9A-2, which contains a C-terminal domain comprising approximately 55 residues without a predicted function. We have overexpressed the phylogenetically distinct
Gt
LPMO9A-2 in
Pichia pastoris
and investigated its properties. Standard analyses using high-performance anion-exchange chromatography–pulsed amperometric detection (HPAEC-PAD) and mass spectrometry (MS) showed that
Gt
LPMO9A-2 is active on cellulose, carboxymethyl cellulose, and xyloglucan. Importantly, compared to other known xyloglucan-active LPMOs,
Gt
LPMO9A-2 has broad specificity, cleaving at any position along the β-glucan backbone of xyloglucan, regardless of substitutions. Using dynamic viscosity measurements to compare the hemicellulolytic action of
Gt
LPMO9A-2 to that of a well-characterized hemicellulolytic LPMO,
Nc
LPMO9C from
Neurospora crassa
revealed that
Gt
LPMO9A-2 is more efficient in depolymerizing xyloglucan. These measurements also revealed minor activity on glucomannan that could not be detected by the analysis of soluble products by HPAEC-PAD and MS and that was lower than the activity of
Nc
LPMO9C. Experiments with copolymeric substrates showed an inhibitory effect of hemicellulose coating on cellulolytic LPMO activity and did not reveal additional activities of
Gt
LPMO9A-2. These results provide insight into the LPMO potential of
G. trabeum
and provide a novel sensitive method, a measurement of dynamic viscosity, for monitoring LPMO activity.

IMPORTANCE
Currently, there are only a few methods available to analyze end products of lytic polysaccharide monooxygenase (LPMO) activity, the most common ones being liquid chromatography and mass spectrometry. Here, we present an alternative and sensitive method based on measurement of dynamic viscosity for real-time continuous monitoring of LPMO activity in the presence of water-soluble hemicelluloses, such as xyloglucan. We have used both these novel and existing analytical methods to characterize a xyloglucan-active LPMO from a brown-rot fungus. This enzyme,
Gt
LPMO9A-2, differs from previously characterized LPMOs in having broad substrate specificity, enabling almost random cleavage of the xyloglucan backbone.
Gt
LPMO9A-2 acts preferentially on free xyloglucan, suggesting a preference for xyloglucan chains that tether cellulose fibers together. The xyloglucan-degrading potential of
Gt
LPMO9A-2 suggests a role in decreasing wood strength at the initial stage of brown rot through degradation of the primary cell wall.