bluuebunny/crossref_metadata_2025_split huggingface dataset:
Assessing the Blank Carbon Contribution, Isotope Mass Balance, and Kinetic Isotope Fractionation of the Ramped Pyrolysis/Oxidation Instrument at NOSAMS
Authors: Hemingway Jordon D , Galy Valier V , Gagnon Alan R , Grant Katherine E , Rosengard Sarah Z , Soulet Guillaume , Zigah Prosper K , McNichol Ann P 
Published: March 2017

AbstractWe estimate the blank carbon mass over the course of a typical Ramped PyrOx (RPO) analysis (150–1000°C; 5°C×min–1) to be (3.7±0.6) μg C with an Fm value of 0.555±0.042 and a δ13C value of (–29.0±0.1) ‰ VPDB. Additionally, we provide equations for RPO Fm and δ13C blank corrections, including associated error propagation. By comparing RPO mass-weighted mean and independently measured bulk δ13C values for a compilation of environmental samples and standard reference materials (SRMs), we observe a small yet consistent 13C depletion within the RPO instrument (mean–bulk: μ=–0.8‰; ±1σ=0.9‰; n=66). In contrast, because they are fractionation-corrected by definition, mass-weighted mean Fm values accurately match bulk measurements (mean–bulk: μ=0.005; ±1σ=0.014; n=36). Lastly, we show there exists no significant intra-sample δ13C variability across carbonate SRM peaks, indicating minimal mass-dependent kinetic isotope fractionation during RPO analysis. These data are best explained by a difference in activation energy between 13C- and 12C-containing compounds (13–12∆E) of 0.3–1.8 J×mol–1, indicating that blank and mass-balance corrected RPO δ13C values accurately retain carbon source isotope signals to within 1–2‰.
Cova Eirós: An Integrated Approach to Dating the Earliest Known Cave Art in NW Iberia
Authors: Steelman Karen L , de Lombera-Hermida Arturo , Viñas-Vallverdú Ramón , Rodríguez-Álvarez Xosé Pedro , Carrera-Ramírez Fernando , Rubio-Mora Albert , Fábregas-Valcarce Ramon 
Published: March 2017

AbstractAt Cova Eirós, we discovered 13 panels with paintings and engravings that stylistically point to the final moments of the Upper Paleolithic. Scanning electron microscopy with energy dispersive X-ray spectroscopy and Fourier transform Raman spectroscopy were used to identify charcoal as black pigment. Although contamination from medieval fires inside the cave complicates the dating of these pictographs, analyses of unpainted rock backgrounds allowed calculation corrections for contaminated samples. We used plasma oxidation and accelerator mass spectrometry (AMS) to directly radiocarbon (14C) date two charcoal paintings—confirming that the images are more than 9000 yr old. As these paintings superimpose engravings, these14C dates also provide a minimum age for an engraving at Cova Eirós that is stylistically Final Magdalenian/Epipaleolithic. This is the first known evidence of Paleolithic cave art in Galicia of NW Iberia.
Archaeological Earthen Mound Complex in Patos Lagoon, Southern Brazil: Chronological Model and Freshwater Influence
Authors: Milheira Rafael G , Macario Kita D , Chanca Ingrid S , Alves Eduardo Q 
Published: March 2017

AbstractIn the present work, we assess the chronology of archaeological sites known as earthen mounds, commonly found at the Pampas biome, among the lowlands of Brazil, Uruguay, and Argentina. We focused on the Pontal da Barra settlement, which is a testimony of the long-term occupation of indigenous groups in the swamp and wet environment of Patos Lagoon, southern Brazil. A Bayesian chronological model based on the radiocarbon (14C) dating of 17 samples of fish otolith, 5 charcoal fragments, and 2 bones (human and dog) allowed determination of the beginning of the occupation as well as the occupational synchronism of the different mounds. The nature of the samples allows us to study the local14C reservoir effect through the comparison between the group of marine and terrestrial samples, deriving a reservoir offset value of 63±5314C yr for this particular area, indicating a strong freshwater influence in the lagoon system. We estimate the start of human intervention in the landscapes of southern Patos Lagoon to be around 2200 cal BP, with the most intense activity between 1800 and 1200 cal BP.
The Applications of Critical-Point Theory to Discontinuous Fractional-Order Differential Equations
Authors: Tian Yu , Nieto Juan J. 
Published: March 2017

AbstractWe consider a fractional equation involving the left and right Riemann–Liouville fractional integrals and with Sturm–Liouville boundary-value conditions. We establish the variational structure of the problem and, by using critical-point theory, the existence of an unbounded sequence of solutions is obtained.
Comparison of supplemental cobalt form on fibre digestion and cobalamin concentrations in cattle
Authors: WATERMAN R. C. , KELLY W. L. , LARSON C. K. , PETERSEN M. K. 
Published: March 2017

SUMMARYCobalt (Co) is essential for rumen microbial metabolism to synthesize methane, acetate and methionine. It also serves as a structural component of vitamin B12(cobalamin), which functions as a coenzyme in energy metabolism. A study was conducted to determine if Co form (carbonatev. glucoheptonate) supplemented above the National Research Council requirements would improve digestibility of a low-quality forage diet and change serum cobalamin concentrations. Nineteen ruminally cannulated cows (577 ± 13 kg) were fed individually in a completely randomized experimental design. Cows were fed a grass hay diet that contained (79·2 g/kg crude protein, 565 g/kg total digestible nutrients, 633·2 g/kg neutral detergent fibre (NDF), 874·2 g/kg dry matter) at a rate of 0·02% of body weight on a as fed basis for a 62-day study, which consisted of three periods; acclimation (AC), treatment (TR) and residual (RE). Measurements taken in the AC period were used as covariates for analysis in the TR and RE periods. Cows were stratified by age (5 ± 0·4 years) and lactational history, and assigned to receive 12·5 mg supplemental Co in one of two forms: (1) 27·2 mg of Co carbonate (CC,n= 11 cows) or (2) 50 mg of Co glucoheptonate (CGH,n= 8 cows). Supplement was administered daily via a gelatin capsule placed directly into the rumen 2 h after feeding. During the last 96 h of each period, forage digestibility was measured using anin situnylon bag technique. Blood samples were collected 4 and 6 h following feeding, and 24 h before the end of each period. A treatment × period interaction was detected forin situorganic matter (OM) disappearance at 96 h; (TR period: 684 and 708 ± 81 g/kg; RE period: 676 and 668 ± 75 g/kg, for CC and CGH, respectively). Once inclusion of Co in the CGH group was removed, OM disappearance was reduced by 4·01% compared with 0·82% in the CC cows. The NDF disappearance (OM basis) was less for the TR compared with the RE at 48 h (629 and 652 ± 39 g/kg, respectively). However, by 96 h NDF disappearance was greater for TR than the RE (704 and 689 ± 44 g/kg; respectively). No differences were detected for cobalamin serum concentrations or rate of fibre fermentation. The outcomes of the current research signify that there may be a slight residual effect of Co supplementation on fermentation; there was also an indication that Co source may enhance the overall extent of fermentation.
THE MATERIALITY OF COLOR IN PRE-COLUMBIAN CODICES: INSIGHTS FROM CULTURAL HISTORY
Authors: Dupey García Élodie 
Published: March 2017

AbstractThis article explores the materiality of the colors of some Nahua codices from pre-Columbian Mexico, comparing data obtained from two bodies of evidence: scientific investigation—through macroscopic inspection and physicochemical studies—and historical accounts. In doing so, this article shows that the Colonial period literature contributes to the understanding of the creation process of the codices and their chromatic palettes, in particular regarding some coloring materials, the identification of which still remains a challenge for scientists. The comparison carried out in this article also elucidates certain aspects of the historical texts on Mesoamerican colors, which were previously poorly understood or misinterpreted.
Effects of bone morphogenetic protein 4 (BMP4) on in vitro development and survival of bovine preantral follicles enclosed in fragments ovarian tissue
Authors: da Cunha Ellen de Vasconcelos , de Souza Glaucinete Borges , Passos José Renato de Sousa , Silva Anderson Weiny Barbalho , Dau Andressa Minussi , Saraiva Márcia Viviane Alves , Lobo Raimundo Nonato Braga , Silva José Roberto Viana 
Published: March 2017

SummaryThe aim of this study was to evaluate the effects of different concentrations of BMP4 on activation, development and mRNA expression of GDF9, BMP15, PCNA, Bax and Bcl2 in cultured bovine follicles enclosed in ovarian tissues. Ovarian tissue fragments were cultured for 6 days in α-MEM+ alone or supplemented with different concentrations of BMP4 (10, 50 or 100 ng/ml). Classical histology was performed to analyze follicle growth and morphology, while real-time PCR was used to analyze mRNA levels in fresh and cultured tissues. After 6 days, the culture of ovarian tissue in α-MEM+ alone or supplemented with 10, 50 or 100 ng/ml BMP4 promoted follicular activation. The different concentrations of BMP4 maintained the percentage of normal follicles similar to results of the control. The presence of 100 ng/ml BMP-4 in culture medium increased oocyte and follicular diameters of primary and secondary follicles when compared with those follicles from uncultured control or cultured in α-MEM+ alone (P < 0.05). The tissues cultured in the presence of increasing concentrations of BMP4 had an increase in mRNA expression of the tested genes, but despite this the differences were not statistically significant. In conclusion, 100 ng/ml BMP4 promotes an increase in diameters of follicles and oocytes of primary and secondary follicles after 6 days of in vitro culture.
Disaster Preparedness among Health Professionals and Support Staff: What is Effective? An Integrative Literature Review
Authors: Gowing Jeremy R. , Walker Kim N. , Elmer Shandell L. , Cummings Elizabeth A. 
Published: March 2017

AbstractIntroductionIt is important that health professionals and support staff are prepared for disasters to safeguard themselves and the community during disasters. There has been a significantly heightened focus on disasters since the terrorist attacks of September 11, 2001 in New York (USA); however, despite this, it is evident that health professionals and support staff may not be adequately prepared for disasters.ReportAn integrative literature review was performed based on a keyword search of the major health databases for primary research evaluating preparedness of health professionals and support staff. The literature was quality appraised using a mixed-methods appraisal tool (MMAT), and a thematic analysis was completed to identify current knowledge and gaps.DiscussionThe main themes identified were: health professionals and support staff may not be fully prepared for disasters; the most effective content and methods for disaster preparedness is unknown; and the willingness of health professionals and support staff to attend work and perform during disasters needs further evaluation. Gaps were identified to guide further research and the creation of new knowledge to best prepare for disasters. These included the need for: high-quality research to evaluate the best content and methods of disaster preparedness; inclusion of the multi-disciplinary health care team as participants; preparation for internal disasters; the development of validated competencies for preparedness; validated tools for measurement; and the importance of performance in actual disasters to evaluate preparation.ConclusionThe literature identified that all types of disaster preparedness activities lead to improvements in knowledge, skills, or attitude preparedness for disasters. Most studies focused on external disasters and the preparedness of medical, nursing, public health, or paramedic professionals. There needs to be a greater focus on the whole health care team, including allied health professionals and support staff, for both internal and external disasters. Evaluation during real disasters and the use of validated competencies and tools to deliver and evaluate disaster preparedness will enhance knowledge of best practice preparedness. However, of the 36 research articles included in this review, only five were rated at 100% using the MMAT. Due to methodological weakness of the research reviewed, the findings cannot be generalized, nor can the most effective method be determined.GowingJR,WalkerKN,ElmerSL,CummingsEA.Disaster preparedness among health professionals and support staff: what is effective? An integrative literature review.Prehosp Disaster Med.2017;32(3):321–328.
Single-Ion Deconvolution of Mass Peak Overlaps for Atom Probe Microscopy
Authors: London Andrew J. , Haley Daniel , Moody Michael P. 
Published: March 2017

AbstractDue to the intrinsic evaporation properties of the material studied, insufficient mass-resolving power and lack of knowledge of the kinetic energy of incident ions, peaks in the atom probe mass-to-charge spectrum can overlap and result in incorrect composition measurements. Contributions to these peak overlaps can be deconvoluted globally, by simply examining adjacent peaks combined with knowledge of natural isotopic abundances. However, this strategy does not account for the fact that the relative contributions to this convoluted signal can often vary significantly in different regions of the analysis volume; e.g., across interfaces and within clusters. Some progress has been made with spatially localized deconvolution in cases where the discrete microstructural regions can be easily identified within the reconstruction, but this means no further point cloud analyses are possible. Hence, we present an ion-by-ion methodology where the identity of each ion, normally obscured by peak overlap, is resolved by examining the isotopic abundance of their immediate surroundings. The resulting peak-deconvoluted data are a point cloud and can be analyzed with any existing tools. We present two detailed case studies and discussion of the limitations of this new technique.
Bidirectional transcription of Linc00441 and RB1 via H3K27 modification-dependent way promotes hepatocellular carcinoma
Authors: Tang Junwei , Xie Yu , Xu Xiaoliang , Yin Yin , Jiang Runqiu , Deng Lei , Tan Zhongming , Gangarapu Venkatanarayana , Tang Jinhai , Sun Beicheng 
Published: March 2017

AbstractThe retinoblastoma gene (RB1), a known tumor-suppressor gene (TSG), was decreased in multiple cancers including hepatocellular carcinoma (HCC). Here we focused on the bidirectional transcripted long noncoding RNA (Linc00441) with neighbor gene RB1 to investigate whether Linc00441 is involved in the suppression of RB1 in HCC. We found that aberrant upregulated intranuclear Linc00441 was reversely correlated with RB1 expression in human HCC samples. The gain- and loss-of-function investigation revealed that Linc00441 could promote the proliferation of HCC cells in vitro and in vivo with an apoptosis suppression and cell cycle rearrangement. Furthermore, RNA pull-down assay indicated the decreased level of RB1 induced by Linc00441 was associated with the incidental methylation by DNMT3A recruited by Linc00441. On the contrary, the transcription factor (TCF-4) enhanced H3K27 acetylation and direct transcription factor for Linc00441 was responsible for the upregulation of Linc00441 in HCC. In conclusion, the epigenetic interaction between Linc00441 and bidirectional transcripted neighbor RB1 may be a de novo theory cutting-point for the inactivation of RB1 in HCC and may serve as targeting site for tumor therapy in the future.
Heterodimers of photoreceptor-specific nuclear receptor (PNR/NR2E3) and peroxisome proliferator-activated receptor-γ (PPARγ) are disrupted by retinal disease-associated mutations
Authors: Fulton Joel , Mazumder Bismoy , Whitchurch Jonathan B , Monteiro Cintia J , Collins Hilary M , Chan Chun M , Clemente Maria P , Hernandez-Quiles Miguel , Stewart Elizabeth A , Amoaku Winfried M , Moran Paula M , Mongan Nigel P , Persson Jenny L , Ali Simak , Heery David M 
Published: March 2017

AbstractPhotoreceptor-specific nuclear receptor (PNR/NR2E3) and Tailless homolog (TLX/NR2E1) are human orthologs of the NR2E group, a subgroup of phylogenetically related members of the nuclear receptor (NR) superfamily of transcription factors. We assessed the ability of these NRs to form heterodimers with other members of the human NRs representing all major subgroups. The TLX ligand-binding domain (LBD) did not appear to form homodimers or interact directly with any other NR tested. The PNR LBD was able to form homodimers, but also exhibited robust interactions with the LBDs of peroxisome proliferator-activated receptor-γ (PPARγ)/NR1C3 and thyroid hormone receptor b (TRb) TRβ/NR1A2. The binding of PNR to PPARγ was specific for this paralog, as no interaction was observed with the LBDs of PPARα/NR1C1 or PPARδ/NR1C2. In support of these findings, PPARγ and PNR were found to be co-expressed in human retinal tissue extracts and could be co-immunoprecipitated as a native complex. Selected sequence variants in the PNR LBD associated with human retinopathies, or a mutation in the dimerization region of PPARγ LBD associated with familial partial lipodystrophy type 3, were found to disrupt PNR/PPARγ complex formation. Wild-type PNR, but not a PNR309G mutant, was able to repress PPARγ-mediated transcription in reporter assays. In summary, our results reveal novel heterodimer interactions in the NR superfamily, suggesting previously unknown functional interactions of PNR with PPARγ and TRβ that have potential importance in retinal development and disease.
Observation of anomalous Hall effect in a non-magnetic two-dimensional electron system
Authors: Maryenko D. , Mishchenko A. S. , Bahramy M. S. , Ernst A. , Falson J. , Kozuka Y. , Tsukazaki A. , Nagaosa N. , Kawasaki M. 
Published: March 2017

AbstractAnomalous Hall effect, a manifestation of Hall effect occurring in systems without time-reversal symmetry, has been mostly observed in ferromagnetically ordered materials. However, its realization in high-mobility two-dimensional electron system remains elusive, as the incorporation of magnetic moments deteriorates the device performance compared to non-doped structure. Here we observe systematic emergence of anomalous Hall effect in various MgZnO/ZnO heterostructures that exhibit quantum Hall effect. At low temperatures, our nominally non-magnetic heterostructures display an anomalous Hall effect response similar to that of a clean ferromagnetic metal, while keeping a large anomalous Hall effect angle θAHE≈20°. Such a behaviour is consistent with Giovannini–Kondo model in which the anomalous Hall effect arises from the skew scattering of electrons by localized paramagnetic centres. Our study unveils a new aspect of many-body interactions in two-dimensional electron systems and shows how the anomalous Hall effect can emerge in a non-magnetic system.
Translational reprogramming in tumour cells can generate oncoselectivity in viral therapies
Authors: Villanueva Eneko , Navarro Pilar , Rovira-Rigau Maria , Sibilio Annarita , Méndez Raúl , Fillat Cristina 
Published: March 2017

AbstractSystemic treatment of cancer requires tumour-selective therapies that eliminate cancer cells yet preserve healthy tissues from undesired damage. Tumoral transformation is associated with profound effects in translational reprogramming of gene expression, such that tumour-specific translational regulation presents an attractive possibility for generating oncoselective therapies. We recently discovered that mRNA translational control by cytoplasmic polyadenylation element-binding proteins (CPEBs) is reactivated in cancer. Here we present a novel approach to restrict genetic-engineered therapies to malignant tissues based on CPEB translational regulation of target mRNAs. We demonstrate that tumour reprogramming of CPEB-mediated mRNA stability and translational regulation modulates tumour-specific expression of viral proteins. For oncolytic adenoviruses, insertion of CPE regulatory sequences in the 3′-untranslated region of the E1A gene provides oncoselectivity, with full potency in cancer cells but attenuated in normal tissues. Our results demonstrate the potential of this strategy to improve oncolytic virus design and provide a framework for exploiting CPE-regulated transgenes for therapy.
Total synthesis of mycobacterial arabinogalactan containing 92 monosaccharide units
Authors: Wu Yong , Xiong De-Cai , Chen Si-Cong , Wang Yong-Shi , Ye Xin-Shan 
Published: March 2017

AbstractCarbohydrates are diverse bio-macromolecules with highly complex structures that are involved in numerous biological processes. Well-defined carbohydrates obtained by chemical synthesis are essential to the understanding of their functions. However, synthesis of carbohydrates is greatly hampered by its insufficient efficiency. So far, assembly of long carbohydrate chains remains one of the most challenging tasks for synthetic chemists. Here we describe a highly efficient assembly of a 92-mer polysaccharide by the preactivation-based one-pot glycosylation protocol. Several linear and branched oligosaccharide/polysaccharide fragments ranging from 5-mer to 31-mer in length have been rapidly constructed in one-pot manner, which enables the first total synthesis of a biologically important mycobacterial arabinogalactan through a highly convergent [31+31+30] coupling reaction. Our results show that the preactivation-based one-pot glycosylation protocol may provide access to the construction of long and complicated carbohydrate chains.
Transcriptome Analysis of Genes Involved in Dendrobine Biosynthesis in Dendrobium nobile Lindl. Infected with Mycorrhizal Fungus MF23 (Mycena sp.)
Authors: Li Qing , Ding Gang , Li Biao , Guo Shun-Xing 
Published: March 2017

AbstractContent determination and microscopic observation proved that dendrobine accumulation in the stem of Dendrobium nobile Lindl. increased after infection with mycorrhizal fungus MF23 (Mycena sp.). Large-scale transcriptome sequencing of symbiotic and asymbiotic D. nobile revealed that 30 unigenes encoding proteins were possibly related to the biosynthesis of dendrobine sesquiterpene backbone. A qRT-PCR experiment of 16 unigenes, selected randomly, proved that there were significant changes in the expression levels of AACT, MVD, PMK and TPS21 at 9 weeks after inoculation. These results implied that MF23 might stimulate dendrobine biosynthesis by regulating the expressions of genes involved in the mevalonate (MVA) pathway. The biogenetic pathway of dendrobine was suggested systematically according to the structural features of dendrobine alkaloids and their sesquiterpene precursors, which implied that post-modification enzymes might play a major role in dendrobine biosynthesis. Thus, genes encoding post-modification enzymes, including cytochrome P450, aminotransferase and methyltransferase, were screened for their possible involvement in dendrobine biosynthesis. This study provides a good example of endophytes promoting the formation of bioactive compounds in their host and paves the way for further investigation of the dendrobine biosynthetic pathway.
Noise-Driven Return Statistics: Scaling and Truncation in Stochastic Storage Processes
Authors: Aquino Tomás , Aubeneau Antoine , McGrath Gavan , Bolster Diogo , Rao Suresh 
Published: March 2017

AbstractIn countless systems, subjected to variable forcing, a key question arises: how much time will a state variable spend away from a given threshold? When forcing is treated as a stochastic process, this can be addressed with first return time distributions. While many studies suggest exponential, double exponential or power laws as empirical forms, we contend that truncated power laws are natural candidates. To this end, we consider a minimal stochastic mass balance model and identify a parsimonious mechanism for the emergence of truncated power law return times. We derive boundary-independent scaling and truncation properties, which are consistent with numerical simulations, and discuss the implications and applicability of our findings.