bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ten-eleven translocation 2 interacts with forkhead box O3 and regulates adult neurogenesis
Authors: Li Xuekun , Yao Bing , Chen Li , Kang Yunhee , Li Yujing , Cheng Ying , Li Liping , Lin Li , Wang Zhiqin , Wang Mengli , Pan Feng , Dai Qing , Zhang Wei , Wu Hao , Shu Qiang , Qin Zhaohui , He Chuan , Xu Mingjiang , Jin Peng 
Published: June 2017

AbstractEmerging evidence suggests that active DNA demethylation machinery plays important epigenetic roles in mammalian adult neurogenesis; however, the precise molecular mechanisms and critical functional players of DNA demethylation in this process remain largely unexplored. Ten–eleven translocation (Tet) proteins convert 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC) and its downstream derivatives. Here we show that 5hmC is elevated during the differentiation of adult neural stem cells (aNSCs), and Tet2 is primarily responsible for modulating 5hmC dynamics. Depletion of Tet2 leads to increased aNSC proliferation and reduced differentiation in vitro and in vivo. Genome-wide transcriptional analyses reveal important epigenetic roles of Tet2 in maintaining the transcriptome landscape related to neurogenesis. Mechanistically, transcription factor forkhead box O3 (Foxo3a) physically interacts with Tet2 and regulates the expression of genes related to aNSC proliferation. These data together establish an important role for the Tet2-Foxo3a axis in epigenetically regulating critical genes in aNSCs during adult neurogenesis.
Electronegative low-density lipoprotein increases the risk of ischemic lower-extremity peripheral artery disease in uremia patients on maintenance hemodialysis
Authors: Chang Chiz-Tzung , Shen Ming-Yi , Lee An-Sean , Wang Chun-Cheng , Chen Wei-Yu , Chang Chia-Ming , Chang Kuan-Cheng , Stancel Nicole , Chen Chu-Huang 
Published: June 2017

AbstractElectronegative low-density lipoprotein (LDL) has been shown to increase coronary artery disease risk in hemodialysis patients, but its effect on the risk of peripheral artery disease (PAD) remains unclear. We separated plasma LDL from 90 uremia patients undergoing hemodialysis into 5 subfractions (L1–L5) according to charge by using fast-protein liquid chromatography with an anion-exchange column and examined the distribution of L5—the most electronegative LDL subfraction—in total LDL (i.e. L5%). During a 5-year period, we followed up with these patients until the occurrence of ischemic lower-extremity PAD. During the follow-up period, ischemic lower-extremity PAD developed in 24.4% of hemodialysis patients. L5% was higher in hemodialysis patients in whom ischemic lower-extremity PAD occurred (3.03% [IQR, 2.36–4.54], n = 22) than in hemodialysis patients in whom PAD did not occur (1.13% [IQR, 0.90–1.83], n = 68) (p < 0.001). Furthermore, L5% significantly increased the adjusted hazard ratio of ischemic lower-extremity PAD (1.54 [95% CI, 1.14–2.10]) (p = 0.005). Flow-mediated dilation was negatively associated with L5% (p < 0.001). Additionally, in vivo experiments from mice showed that L5 compromised endothelium-dependent vascular relaxation through a nitric oxide–related mechanism. Our findings indicate that increased L5% may be associated with the occurrence of ischemic lower-extremity PAD in hemodialysis patients.
Sulfonated reduced graphene oxide catalyzed cyclization of hydrazides and carbon dioxide to 1,3,4-oxadiazoles under sonication
Authors: Brahmayya Manuri , Dai Shenghong A. , Suen Shing-Yi 
Published: June 2017

AbstractAcid catalysts facilitate many chemical reactions. Sulfonated reduced grapheneoxide (rGOPhSO3H) has shown to be an encouraging solid acid catalyst because of its efficiency, cost-effectiveness and safety of use. In this study, we prepared the rGOPhSO3H nano acid catalyst, with the introduction of aromatic sulfonic acid radicals onto GO by fractional removal of oxygenated functions. It was thoroughly characterized by FT-IR, X-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), Raman spectroscopy, energy dispersive spectroscopy (EDS) and solid state 13C MAS NMR (SSNMR). Here we report the conversion of CO2 (1.0 atm pressure, at = 50 °C, the source of C1 carbon feed stock) with hydrazides and a catalytic amount rGOPhSO3H, which through a cyclization reaction results in a new strategy for the synthesis of 5-substituted-3H-[1,3,4]-oxadiazol-2-ones (SOxdOs) under ultrasonic irradiation. Hence this concept of cyclization opens up for new insights
Global, site-specific analysis of neuronal protein S-acylation
Authors: Collins Mark O. , Woodley Keith T. , Choudhary Jyoti S. 
Published: June 2017

AbstractProtein S-acylation (palmitoylation) is a reversible lipid modification that is an important regulator of dynamic membrane-protein interactions. Proteomic approaches have uncovered many putative palmitoylated proteins however, methods for comprehensive palmitoylation site characterization are lacking. We demonstrate a quantitative site-specific-Acyl-Biotin-Exchange (ssABE) method that allowed the identification of 906 putative palmitoylation sites on 641 proteins from mouse forebrain. 62% of sites map to known palmitoylated proteins and 102 individual palmitoylation sites are known from the literature. 54% of palmitoylation sites map to synaptic proteins including many GPCRs, receptors/ion channels and peripheral membrane proteins. Phosphorylation sites were also identified on a subset of peptides that were palmitoylated, demonstrating for the first time co-identification of these modifications by mass spectrometry. Palmitoylation sites were identified on over half of the family of palmitoyl-acyltransferases (PATs) that mediate protein palmitoylation, including active site thioester-linked palmitoyl intermediates. Distinct palmitoylation motifs and site topology were identified for integral membrane and soluble proteins, indicating potential differences in associated PAT specificity and palmitoylation function. ssABE allows the global identification of palmitoylation sites as well as measurement of the active site modification state of PATs, enabling palmitoylation to be studied at a systems level.
Linking functions: an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP
Authors: Contreras-Martos Sara , Piai Alessandro , Kosol Simone , Varadi Mihaly , Bekesi Angela , Lebrun Pierre , Volkov Alexander N. , Gevaert Kris , Pierattelli Roberta , Felli Isabella C. , Tompa Peter 
Published: June 2017

AbstractThe multi-domain transcriptional coactivators CBP/p300 integrate a multitude of signaling inputs, interacting with more than 400 proteins via one or more of their globular domains. While CBP/p300 function is typically considered in terms of these structured domains, about half of the protein consists of intrinsically disordered regions (IDRs) of varying length. However, these IDRs have only been thought of as linkers that allow flexible spatial arrangement of the structured domains, but recent studies have shown that similar IDRs mediate specific and critical interactions in other proteins. To examine the roles of IDRs in CBP, we performed yeast-two-hybrid screenings of placenta and lung cancer cDNA libraries, which demonstrated that the long IDR linking the KIX domain and bromodomain of CBP (termed ID3) can potentially bind to several proteins. The RNA-binding Zinc-finger protein 106 (ZFP106) detected in both libraries was identified as a novel substrate for CBP-mediated acetylation. Nuclear magnetic resonance (NMR) spectroscopy combined with cross-linking experiments and competition-binding assays showed that the fully disordered isolated ID3 transiently interacts with an IDR of ZFP106 in a fashion that disorder of both regions is maintained. These findings demonstrate that beside the linking function, ID3 can also interact with acetylation substrates of CBP.
Basal hypersecretion of glucagon and insulin from palmitate-exposed human islets depends on FFAR1 but not decreased somatostatin secretion
Authors: Kristinsson H. , Sargsyan E. , Manell H. , Smith D. M. , Göpel S. O. , Bergsten P. 
Published: June 2017

AbstractIn obesity fasting levels of both glucagon and insulin are elevated. In these subjects fasting levels of the free fatty acid palmitate are raised. We have demonstrated that palmitate enhances glucose-stimulated insulin secretion from isolated human islets via free fatty acid receptor 1 (FFAR1/GPR40). Since FFAR1 is also present on glucagon-secreting alpha-cells, we hypothesized that palmitate simultaneously stimulates secretion of glucagon and insulin at fasting glucose concentrations. In addition, we hypothesized that concomitant hypersecretion of glucagon and insulin was also contributed by reduced somatostatin secretion. We found basal glucagon, insulin and somatostatin secretion and respiration from human islets, to be enhanced during palmitate treatment at normoglycemia. Secretion of all hormones and mitochondrial respiration were lowered when FFAR1 or fatty acid β-oxidation was inhibited. The findings were confirmed in the human beta-cell line EndoC-βH1. We conclude that fatty acids enhance both glucagon and insulin secretion at fasting glucose concentrations and that FFAR1 and enhanced mitochondrial metabolism but not lowered somatostatin secretion are crucial in this effect. The ability of chronically elevated palmitate levels to simultaneously increase basal secretion of glucagon and insulin positions elevated levels of fatty acids as potential triggering factors for the development of obesity and impaired glucose control.
High performance asymmetric supercapacitor based on Cobalt Nickle Iron-layered double hydroxide/carbon nanofibres and activated carbon
Authors: Wang Feifei , Sun Shiguo , Xu Yongqian , Wang Ting , Yu Ruijin , Li Hongjuan 
Published: June 2017

AbstractA novel Cobalt Nickle Iron-layered double hydroxide/carbon nanofibres (CoNiFe-LDH/CNFs-0.5) composite was successfully fabricated through an easy in situ growth approach. The morphology and composition of the obtained materials were systematically investigated. When the two derived materials were used for supercapacitor electrodes, the CoNiFe-LDH/CNFs-0.5 composite displayed high specific surface area (114.2 m2 g−1), specific capacitance (1203 F g−1 at 1 A g−1) and rate capability (77.1% from 1 A g−1 to 10 A g−1), which were considerably higher than those of pure CoNiFe-LDH. Moreover, the specific capacitance of CoNiFe-LDH/CNFs-0.5 composite remained at 94.4% after 1000 cycles at 20 A g−1, suggesting excellent long-time cycle life. The asymmetric supercapacitor based on CoNiFe-LDH/CNFs-0.5 as a positive electrode and activated carbon as a negative electrode was manufactured and it exhibited a specific capacitance of 84.9 F g−1 at 1 A g−1 and a high energy density of 30.2 W h kg−1. More importantly, this device showed long-term cycling stability, with 82.7% capacity retention after 2000 cycles at 10 A g−1. Thus, this composite with outstanding electrochemical performance could be a promising electrode material for supercapacitors.
A high-speed electro-optic triple-microring resonator modulator
Authors: Hong Jianxun , Qiu Feng , Cheng Xiaoyang , Spring Andrew M. , Yokoyama Shiyoshi 
Published: June 2017

AbstractThe coupling intensity modulator based on a triple-microring structure was proposed and numerically investigated for a high speed and a low bit error ratio (BER) operation. The modulator consists of a dual-microring optical cavity and a gate-microring energy feedback path. The optical cavity ensures a high energy storing efficiency, and the feedback path enables modulation with little intracavity energy decay. The bandwidth of 103 GHz and modulation depth of 6.2 dB at 2.0 Vpp were theoretically verified by the analysis of the sinusoidal modulation performance. Pulse modulation resulted in a data rate of 160 Gbps, an extinction ratio of 16.84 dB, and a BER of 1 × 10−8. The proposed modulator is applicable for compact, high-speed, and low-energy photonic integration.
An attenuated Machupo virus with a disrupted L-segment intergenic region protects guinea pigs against lethal Guanarito virus infection
Authors: Golden Joseph W. , Beitzel Brett , Ladner Jason T. , Mucker Eric M. , Kwilas Steven A. , Palacios Gustavo , Hooper Jay W. 
Published: June 2017

AbstractMachupo virus (MACV) is a New World (NW) arenavirus and causative agent of Bolivian hemorrhagic fever (HF). Here, we identified a variant of MACV strain Carvallo termed Car91 that was attenuated in guinea pigs. Infection of guinea pigs with an earlier passage of Carvallo, termed Car68, resulted in a lethal disease with a 63% mortality rate. Sequencing analysis revealed that compared to Car68, Car91 had a 35 nucleotide (nt) deletion and a point mutation within the L-segment intergenic region (IGR), and three silent changes in the polymerase gene that did not impact amino acid coding. No changes were found on the S-segment. Because it was apathogenic, we determined if Car91 could protect guinea pigs against Guanarito virus (GTOV), a distantly related NW arenavirus. While naïve animals succumbed to GTOV infection, 88% of the Car91-exposed guinea pigs were protected. These findings indicate that attenuated MACV vaccines can provide heterologous protection against NW arenaviruses. The disruption in the L-segment IGR, including a single point mutant and 35 nt partial deletion, were the only major variance detected between virulent and avirulent isolates, implicating its role in attenuation. Overall, our data support the development of live-attenuated arenaviruses as broadly protective pan-arenavirus vaccines.
Motor dysfunction and touch-slang in user interface data
Authors: Klein Yoni , Djaldetti Ruth , Keller Yosi , Bachelet Ido 
Published: June 2017

AbstractThe recent proliferation in mobile touch-based devices paves the way for increasingly efficient, easy to use natural user interfaces (NUI). Unfortunately, touch-based NUIs might prove difficult, or even impossible to operate, in certain conditions e.g. when suffering from motor dysfunction such as Parkinson’s Disease (PD). Yet, the prevalence of such devices makes them particularly suitable for acquiring motor function data, and enabling the early detection of PD symptoms and other conditions. In this work we acquired a unique database of more than 12,500 annotated NUI multi-touch gestures, collected from PD patients and healthy volunteers, that were analyzed by applying advanced shape analysis and statistical inference schemes. The proposed analysis leads to a novel detection scheme for early stages of PD. Moreover, our computational analysis revealed that young subjects may be using a ‘slang’ form of gesture-making to reduce effort and attention cost while maintaining meaning, whereas older subjects put an emphasis on content and precise performance.
A comprehensive ethnic-based analysis of alpha thalassaemia allelle frequency in northern Thailand
Authors: Kulaphisit Mattapong , Kampuansai Jatupol , Leecharoenkiat Kamonlak , Wathikthinnakon Methi , Kangwanpong Daoroong , Munkongdee Thongperm , Svasti Saovaros , Fucharoen Suthat , Smith Duncan R. , Lithanatudom Pathrapol 
Published: June 2017

AbstractAlpha (α)-thalassaemia is one of the most prevalent hereditary blood disorders, commonly affecting Southeast Asian people, with the highest incidence (30–40%) being seen in northern Thailand. However, this high incidence was estimated without consideration of the variations between ethnic populations and the geographical location of the populations. To address this issue, a total of 688 samples from 13 different northern Thai ethnic groups (30 villages) categorized into three linguistic groups were genotyped for deletional alpha-thalassaemia (-α3.7, -α4.2, --SEA and --THAI) and/or non-deletional alpha-thalassaemia (αCS and αPS) via multiplex gap-PCR and dot-blot hybridization, respectively. Alpha+(-α3.7, -α4.2, αCS and αPS) and alpha°-thalassaemia (--SEA and --THAI) allele frequencies (with 95% Confidence Interval) were the highest in the Sino-Tibetan group [0.13 (0.08–0.18)] and the Tai-Kadai group [0.03 (0.02–0.05)], respectively. With regards to ethnicity, the varying allele frequency of α+ and α°-thalassaemia amongst a variety of ethnic groups was observed. The highest α+-thalassaemia allele frequency was found in the Paluang [0.21 (0.10–0.37)] while α°-thalassaemia allele frequency was the highest in the Yuan [0.04 (0.01–0.10)]. These detailed results of alpha thalassaemia allele frequency and genetic diversity amongst the northern Thai ethnic groups demonstrate the need for ethnicity based thalassaemia prevention programs.
Molecular origin of drug release by water boiling inside carbon nanotubes from reactive molecular dynamics simulation and DFT perspectives
Authors: Ganji M. Darvish , Mirzaei Sh. , Dalirandeh Z. 
Published: June 2017

AbstractOwing to their nanosized hollow cylindrical structure, CNTs hold the promise to be utilized as desired materials for encapsulating molecules which demonstrate wide inferences in drug delivery. Here we evaluate the possibility of drug release from the CNTs with various types and edge chemistry by reactive MD simulation to explain the scientifically reliable relations for proposed process. It was shown that heating of CNTs (up to 750 K) cannot be used for release of incorporated drug (phenylalanine) into water and even carbonated water solvent with very low boiling temperature. This is due to the strong physisorption (π-stacking interaction) between the aromatic of encapsulated drug and CNT sidewall which causes the drug to bind the nanotube sidewall. We have further investigated the interaction nature and release mechanism of water and drug confined/released within/from the CNTs by DFT calculations and the results confirmed our MD simulation findings. The accuracy of DFT method was also validated against the experimental and theoretical values at MP2/CCSD level. Therefore, we find that boiling of water/carbonated water confined within the CNTs could not be a suitable technique for efficient drug release. Our atomistic simulations provide a well-grounded understanding for the release of drug molecules confined within CNTs.
Phononic Fano resonances in graphene nanoribbons with local defects
Authors: Savin Alexander V. , Kivshar Yuri S. 
Published: June 2017

AbstractWe study the interaction between localized vibrational modes and propagating phonons in graphene nanoribbons with different types of localized internal and edge defects. We analyze discrete eigenmodes of the nanoribbons with defects and also employ direct numerical simulations of the ballistic phonon and heat transport. We observe a partial suppression of the phonon transport due to the so-called phononic Fano resonances originating from interference between localized and propagating phonons. We observe lower transmission for the defects which support larger number of localized eigenmodes. The Fano resonance is also manifested in the reduction of the heat transport along the graphene stripe, when each of the local defects reduces the amount of the heat flow transmitted through the nanoribbon, with the effect being more pronounced at low temperatures when the thermal energy transfer is dominated by the phonon transport. We also study the similar problems for edge defects in graphene nanoribbons and demonstrate that a reduction of the thermal conductivity is proportional to the length of a rough edge of the nanoribbon with edge defects.
Higher Fertilizer Inputs Increase Fitness Traits of Brown Planthopper in Rice
Authors: Rashid M. M. , Ahmed N. , Jahan M. , Islam K. S. , Nansen C. , Willers J. L. , Ali M. P. 
Published: June 2017

AbstractRice (Oryza sativaL.) is the primary staple food source for more than half of the world’s population. In many developing countries, increased use of fertilizers is a response to increase demand for rice. In this study, we investigated the effects of three principal fertilizer components (nitrogen, phosphorus and potassium) on the development of potted rice plants and their effects on fitness traits of the brown planthopper (BPH) [Nilaparvata lugens(Stål) (Homoptera: Delphacidae)], which is a major pest of rice in Bangladesh and elsewhere. Compared to low fertilizer inputs, high fertilizer treatments induced plant growth but also favored BPH development. The BPH had higher survival, developed faster, and the intrinsic rate of natural increase (rm) was higher on well-fertilized than under-fertilized plants. Among the fertilizer inputs, nitrogen had the strongest effect on the fitness traits of BPH. Furthermore, both the “Plant vigor hypothesis” and the “Plant stress hypothesis” were supported by the results, the former hypothesis more so than the latter. These hypotheses suggest that the most suitable/attractive hosts for insect herbivores are the most vigorous plants. Our findings emphasized that an exclusive focus on yield increases through only enhanced crop fertilization may have unforeseen, indirect, effects on crop susceptibility to pests, such as BPH.
Endogenous melatonin promotes rhythmic recruitment of neutrophils toward an injury in zebrafish
Authors: Ren Da-long , Ji Cheng , Wang Xiao-Bo , Wang Han , Hu Bing 
Published: June 2017

AbstractNeutrophil recruitment to injured tissue appears to be an evolutionarily conserved strategy for organisms to fight against exogenous insults. Recent studies have shown rhythmic migration of neutrophils and several factors, including melatonin, have been implicated in regulating this rhythmic migration. The mechanisms underlying how endogenous melatonin regulates rhythmic neutrophils migration, however, are unclear. Here we generated a zebrafish annat2 mutant that lacks endogenous melatonin and, subsequently, a Tg(lyz:EGFP);aanat2−/− transgenic line that allows for monitoring neutrophils migration visually in live zebrafish. We observed that migrating neutrophils are significantly reduced in aanat2−/− mutant zebrafish under a light/dark condition, and the disrupted migrating rhythmicity of neutrophils in aanat2−/− zebrafish is independent of the circadian clock. Further, we also found that endogenous melatonin enhances neutrophils migration likely by inducing the expression of cytokines such as interleukin-8 and interleukin-1β. Together, our findings provide evidence that endogenous melatonin promotes rhythmic migration of neutrophils through cytokines in zebrafish.
Ynamide: A New Coupling Reagent for Amide and Peptide Synthesis
Authors: Hu Long , Zhao Junfeng 
Published: June 2017

The discovery and application of ynamide coupling reagents is highlighted with a brief summary of the development history of coupling reagents in amide and peptide synthesis. As novel coupling reagents, ynamides are not only effective for simple amide and dipeptide synthesis but also can be used for peptide fragment condensation. More importantly, no racemization was detected during the activation of α-chiral carboxylic acids by employing ynamide coupling reagents.1	Introduction2	Carbodiimide Coupling Reagents3	Uronium/Guanidinium Salt Coupling Reagents4	Phosphonium Salt Coupling Reagents5	Ethoxyacetylene as a Coupling Reagent6	Ynamine Coupling Reagents7	Ynamide Coupling Reagents8	Summary and Outlook
Nasal Tip Dermoid Sinus Cyst Excision by Open Rhinoplasty Technique
Authors: Sakthivel Pirabu , Kumar Rajeev , Kairo Arvind , Kumar Rakesh , Thota Ramya 
Published: June 2017

AbstractNasal dermoid sinus cysts are uncommon congenital anomalies, presenting either as cysts or sinuses with varied presentation at birth, childhood, or even adulthood. A midline nasal pit, fistula, or infected mass may be located anywhere from the glabella to the nasal columella. Preoperative radiological investigation with CT (computed tomography) and MRI (magnetic resonance imaging) scans is mandatory to rule out intracranial extension. Complete excision of the cyst along with its tract is the only definitive therapeutic modality. We present a case of nasal dermoid sinus cyst in a 3-year-old male child who underwent excision by open rhinoplasty approach.