bluuebunny/crossref_metadata_2025_split huggingface dataset:
Improved cold tolerance in Elymus nutans by exogenous application of melatonin may involve ABA-dependent and ABA-independent pathways
Authors: Fu Juanjuan , Wu Ye , Miao Yanjun , Xu Yamei , Zhao Enhua , Wang Jin , Sun Huaien , Liu Qian , Xue Yongwei , Xu Yuefei , Hu Tianming 
Published: January 2017

AbstractMelatonin is an important secondary messenger that plays a central role in plant growth, as well as abiotic and biotic stress tolerance. However, the underlying physiological and molecular mechanisms of melatonin-mediated cold tolerance, especially interactions between melatonin and other key molecules in the plant stress response, remain unknown. Here, the interrelation between melatonin and abscisic acid (ABA) was investigated in two genotypes of Elymus nutans Griseb., the cold-tolerant Damxung (DX) and the cold-sensitive Gannan (GN) under cold stress. Pre-treatment with exogenous melatonin or ABA alleviated oxidative injury via scavenging ROS, while enhancing both antioxidant enzyme activities and non-enzymatic antioxidant contents. Treatment of fluridone, an ABA biosynthesis inhibitor caused membrane lipid peroxidation and lowered melatonin-induced antioxidant defense responses. It is worth noting that cold stress significantly induced both endogenous melatonin and ABA levels in both genotypes. Application of melatonin increased ABA production, while fluridone significantly suppressed melatonin-induced ABA accumulation. ABA and fluridone pre-treatments failed to affect the endogenous melatonin concentration. Moreover, exogenous melatonin up-regulated the expression of cold-responsive genes in an ABA-independent manner. These results indicate that both ABA-dependent and ABA-independent pathways may contribute to melatonin-induced cold tolerance in E. nutans.
Comparative analysis of DNA methylome and transcriptome of skeletal muscle in lean-, obese-, and mini-type pigs
Authors: Yang Yalan , Liang Guoming , Niu Guanglin , Zhang Yuanyuan , Zhou Rong , Wang Yanfang , Mu Yulian , Tang Zhonglin , Li Kui 
Published: January 2017

AbstractDNA methylation plays a pivotal role in biological processes by affecting gene expression. However, how DNA methylation mediates phenotype difference of skeletal muscle between lean-, obese-, and mini-type pigs remains unclear. We systematically carried out comparative analysis of skeletal muscle by integrating analysis of genome-wide DNA methylation, mRNA, lncRNA and miRNA profiles in three different pig breeds (obese-type Tongcheng, lean-type Landrace, and mini-type Wuzhishan pigs). We found that the differentially methylated genes (DMGs) were significantly associated with lipid metabolism, oxidative stress and muscle development. Among the identified DMGs, 253 genes were related to body-size and obesity. A set of lncRNAs and mRNAs including UCP3, FHL1, ANK1, HDAC4, and HDAC5 exhibited inversely changed DNA methylation and expression level; these genes were associated with oxidation reduction, fatty acid metabolism and cell proliferation. Gene regulatory networks involved in phenotypic variation of skeletal muscle were related to lipid metabolism, cellular movement, skeletal muscle development, and the p38 MAPK signaling pathway. DNA methylation potentially influences the propensity for obesity and body size by affecting gene expression in skeletal muscle. Our findings provide an abundant information of epigenome and transcriptome that will be useful for animal breeding and biomedical research.
Peripheral blood circular RNA hsa_circ_0124644 can be used as a diagnostic biomarker of coronary artery disease
Authors: Zhao Zhenzhou , Li Xuejie , Gao Chuanyu , Jian Dongdong , Hao Peiyuan , Rao Lixin , Li Muwei 
Published: January 2017

AbstractThe aim of the present study was to investigate the expression of circular RNAs (circRNAs) in the peripheral blood of coronary artery disease (CAD) patients and the potential use of circRNAs as diagnostic biomarkers of CAD. We first analysed peripheral blood circRNAs of 12 CAD patients and 12 control individuals by RNA microarray and found that 22 circRNAs were differentially expressed between these two groups: 12 were upregulated, and 10 were downregulated. Then, we selected 5 circRNAs as candidate biomarkers under stricter screening criteria and verified them in another group of subjects consisting of 30 control individuals and 30 CAD patients with different SYNTAX scores. These 5 circRNAs were all remarkably increased in the CAD group. Hsa_circ_0124644 had the largest area under the curve (AUC). We tested hsa_circ_0124644 in an independent cohort consisting of 115 control individuals and 137 CAD patients. After we included the risk factors for CAD, the AUC slightly increased from 0.769 (95% confidence interval = [0.710–0.827], P < 0.001) to 0.804 ([0.751–0.857], P < 0.001), and when combined with hsa_circ_0098964, the diagnostic value slightly increased. Taken together, our results suggest that hsa_circ_0124644 can be used as a diagnostic biomarker of CAD.
The cellular magnetic response and biocompatibility of biogenic zinc- and cobalt-doped magnetite nanoparticles
Authors: Moise Sandhya , Céspedes Eva , Soukup Dalibor , Byrne James M. , El Haj Alicia J. , Telling Neil D. 
Published: January 2017

AbstractThe magnetic moment and anisotropy of magnetite nanoparticles can be optimised by doping with transition metal cations, enabling their properties to be tuned for different biomedical applications. In this study, we assessed the suitability of bacterially synthesized zinc- and cobalt-doped magnetite nanoparticles for biomedical applications. To do this we measured cellular viability and activity in primary human bone marrow-derived mesenchymal stem cells and human osteosarcoma-derived cells. Using AC susceptibility we studied doping induced changes in the magnetic response of the nanoparticles both as stable aqueous suspensions and when associated with cells. Our findings show that the magnetic response of the particles was altered after cellular interaction with a reduction in their mobility. In particular, the strongest AC susceptibility signal measured in vitro was from cells containing high-moment zinc-doped particles, whilst no signal was observed in cells containing the high-anisotropy cobalt-doped particles. For both particle types we found that the moderate dopant levels required for optimum magnetic properties did not alter their cytotoxicity or affect osteogenic differentiation of the stem cells. Thus, despite the known cytotoxicity of cobalt and zinc ions, these results suggest that iron oxide nanoparticles can be doped to sufficiently tailor their magnetic properties without compromising cellular biocompatibility.
In situ degradation of antibiotic residues in medical intravenous infusion bottles using high energy electron beam irradiation
Authors: Wang Min , Zhang Lele , Zhang Guilong , Pang Tao , Zhang Xin , Cai Dongqing , Wu Zhengyan 
Published: January 2017

AbstractThis study reported an immediate approach for the degradation of three antibiotic (amoxicillin, ofloxacin, and cefradine) residues in medical intravenous infusion bottles (MIIBs) using high energy electron beam (HEEB) irradiation. The effects of irradiation doses, initial concentrations, initial pH, and scavengers of active radicals on the degradation of three antibiotic residues (ARs) were investigated, and the results displayed that 97.02%, 97.61% and 96.87% of amoxicillin, ofloxacin, and cefradine residues could be degraded in situ through HEEB irradiation respectively. Fourier transform infrared spectroscopy (FTIR) and high performance liquid chromatography-mass spectrometry (HPLC-MS) analysis demonstrated that ARs were mainly decomposed into inorganic ions and alkanes. Typically, the detailed degradation mechanism of ARs was also investigated, and the dominant active particle inducing the degradation of antibiotics during the HEEB irradiation process was demonstrated to be hydroxyl radical.
Effects of Elevated β-Estradiol Levels on the Functional Morphology of the Testis - New Insights
Authors: Leavy Myles , Trottmann Matthias , Liedl Bernhard , Reese Sven , Stief Christian , Freitag Benjamin , Baugh John , Spagnoli Giulio , Kölle Sabine 
Published: January 2017

AbstractElevated estradiol levels are correlated with male infertility. Causes of hyperestrogenism include diseases of the adrenal cortex, testis or medications affecting the hypothalamus-pituitary-gonadal axis. The aim of our study was to elucidate the effects of estradiol treatment on testicular cellular morphology and function, with reference to the treatment regimen received. Testes samples (n = 9) were obtained post-orchiectomy from male-to-female transsexuals within the age range of 26–52 years. Each patient had a minimum of 1–6 years estradiol treatment. For comparison, additional samples were obtained from microscopically unaltered testicular tissue surrounding tumors (n = 7). The tissues obtained were investigated by stereomicroscopy, histochemistry, scanning electron microscopy (SEM) and immunohistochemistry. Our studies revealed that estradiol treatment significantly decreased the diameter of the seminiferous tubules (p < 0.05) and induced fatty degeneration in the surrounding connective tissue. An increase in collagen fiber synthesis in the extracellular matrix (ECM) surrounding the seminiferous tubules was also induced. Spermatogenesis was impaired resulting in mainly spermatogonia being present. Sertoli cells revealed diminished expression of estrogen receptor alpha (ERα). Both Sertoli and Leydig cells showed morphological alterations and glycoprotein accumulations. These results demonstrate that increased estradiol levels drastically impact the human testis.
Building a genetic risk model for bipolar disorder from genome-wide association data with random forest algorithm
Authors: Chuang Li-Chung , Kuo Po-Hsiu 
Published: January 2017

AbstractA genetic risk score could be beneficial in assisting clinical diagnosis for complex diseases with high heritability. With large-scale genome-wide association (GWA) data, the current study constructed a genetic risk model with a machine learning approach for bipolar disorder (BPD). The GWA dataset of BPD from the Genetic Association Information Network was used as the training data for model construction, and the Systematic Treatment Enhancement Program (STEP) GWA data were used as the validation dataset. A random forest algorithm was applied for pre-filtered markers, and variable importance indices were assessed. 289 candidate markers were selected by random forest procedures with good discriminability; the area under the receiver operating characteristic curve was 0.944 (0.935–0.953) in the training set and 0.702 (0.681–0.723) in the STEP dataset. Using a score with the cutoff of 184, the sensitivity and specificity for BPD was 0.777 and 0.854, respectively. Pathway analyses revealed important biological pathways for identified genes. In conclusion, the present study identified informative genetic markers to differentiate BPD from healthy controls with acceptable discriminability in the validation dataset. In the future, diagnosis classification can be further improved by assessing more comprehensive clinical risk factors and jointly analysing them with genetic data in large samples.
Latitude affects Morningness-Eveningness: evidence for the environment hypothesis based on a systematic review
Authors: Randler Christoph , Rahafar Arash 
Published: January 2017

AbstractMorningness-eveningness (M/E) is an individual trait related to a person’s sleep-wake cycle and preference for morning or evening hours. The “environment hypothesis” suggests that M/E is dependent on environmental factors, such as latitude, mean average temperature and photoperiod. We here analyzed a large number of datasets to assess this effect based on a systematic review. Data were from a total of 87 datasets and 35,589 individuals based on 28 countries. Partial correlations correcting for age revealed significant relationships between M/E and latitude, mean yearly temperature, photoperiod and sunset. Evening orientation was related to higher latitude, longer days and later sunset. Morning orientation was related to higher average temperatures. Percentage of females and sunrise time had no significant influence. These variables (sunset, temperature, photoperiod) were then input in a general linear model. The full model showed an influence of age and of sunset on CSM scores, but not of photoperiod and average temperature. Sunset, therefore, seems to be the most important statistical predictor for the observed latitudinal gradient.
Calpain-dependent disruption of nucleo-cytoplasmic transport in ALS motor neurons
Authors: Yamashita Takenari , Aizawa Hitoshi , Teramoto Sayaka , Akamatsu Megumi , Kwak Shin 
Published: January 2017

AbstractNuclear dysfunction in motor neurons has been hypothesized to be a principal cause of amyotrophic lateral sclerosis (ALS) pathogenesis. Here, we investigated the mechanism by which the nuclear pore complex (NPC) is disrupted in dying motor neurons in a mechanistic ALS mouse model (adenosine deaminase acting on RNA 2 (ADAR2) conditional knockout (AR2) mice) and in ALS patients. We showed that nucleoporins (Nups) that constituted the NPC were cleaved by activated calpain via a Ca2+-permeable AMPA receptor-mediated mechanism in dying motor neurons lacking ADAR2 expression in AR2 mice. In these neurons, nucleo-cytoplasmic transport was disrupted, and the level of the transcript elongation enzyme RNA polymerase II phosphorylated at Ser2 was significantly decreased. Analogous changes were observed in motor neurons lacking ADAR2 immunoreactivity in sporadic ALS patients. Therefore, calpain-dependent NPC disruption may participate in ALS pathogenesis, and inhibiting Ca2+-mediated cell death signals may be a therapeutic strategy for ALS.
Hippocampal encoding of interoceptive context during fear conditioning
Authors: Yoo S-W , Bae M , Tovar-y-Romo L B , Haughey N J 
Published: January 2017

AbstractRodent models of auditory fear conditioning are often used to understand the molecular mechanisms regulating fear- and anxiety-related behaviors. Conditioning and extinction memories are influenced by contextual cues, and the reinstatement of conditioned fear occurs when the conditioning stimulus is presented in a context different from the extinction context. Although it has been proposed that internal state is a feature of context that could influence extinction, contributions of interoception to conditioning have not been experimentally addressed. Here we use ethanol (EtOH) to show that interoceptive cues are encoded through the hippocampus by mechanisms that involve increased phosphorylation of GluR1 on serine 845, and biophysical alterations in neuronal membranes that facilitate stabilization of surface-located calcium-permeable n-2-amino-3-(5-methyl-3-oxo-1,2-oxazol-4-yl) propanoic acid (AMPA) receptor (AMPAR) into membrane microdomains. Conflicting interoceptive cues during extinction and fear relapse testing resulted in a failure to consolidate extinction that was reversed by the administration of AMPAR antagonists immediately following the retrieval cue.
Antidepressant responsiveness in adulthood is permanently impaired after neonatal destruction of the neurogenic pool
Authors: Yu S , Zutshi I , Stoffel R , Zhang J , Ventura-Silva A P , Sousa N , Costa P S , Holsboer F , Patchev A , Almeida O F X 
Published: January 2017

AbstractThe dynamic turnover of hippocampal neurons is implicated in the regulation of cognitive and affective behavior. Extending our previous demonstration that administration of dexamethasone (ND) to neonatal rats depletes the resident population of neural precursor cells (NPC) and restrains the size of the neurogenic regions, we now show that the adverse effects of ND persist into adulthood. Specifically, ND impairs repletion of the neurogenic pool and neurogenesis; ND also compromises cognitive performance, the ability to actively adapt to an acute stressor and, the efficacy of glucocorticoid (GC) negative feedback. Interestingly, although ND depletes the neurogenic pool, it does not permanently abolish the proliferative machinery of the residual NPC population; however, ND increases the susceptibility of hippocampal granule neurons to apoptosis. Although the antidepressant fluoxetine (FLX) reverses the latter phenomenon, it does not replenish the NPC pool. Treatment of ND-treated adult rats with FLX also improves GC negative feedback, albeit without rescuing the deleterious effects of ND on behavior. In summary, ND leads to protracted disruption of mental functions, some of which are resistant to antidepressant interventions. We conclude that manipulation of the NPC pool during early life may jeopardize the therapeutic potential of antidepressants in adulthood.
Neural substrates of cue reactivity and craving in gambling disorder
Authors: Limbrick-Oldfield E H , Mick I , Cocks R E , McGonigle J , Sharman S P , Goldstone A P , Stokes P R A , Waldman A , Erritzoe D , Bowden-Jones H , Nutt D , Lingford-Hughes A , Clark L 
Published: January 2017

AbstractCue reactivity is an established procedure in addictions research for examining the subjective experience and neural basis of craving. This experiment sought to quantify cue-related brain responses in gambling disorder using personally tailored cues in conjunction with subjective craving, as well as a comparison with appetitive non-gambling stimuli. Participants with gambling disorder (n=19) attending treatment and 19 controls viewed personally tailored blocks of gambling-related cues, as well as neutral cues and highly appetitive (food) images during a functional magnetic resonance imaging (fMRI) scan performed ~2–3 h after a usual meal. fMRI analysis examined cue-related brain activity, cue-related changes in connectivity and associations with block-by-block craving ratings. Craving ratings in the participants with gambling disorder increased following gambling cues compared with non-gambling cues. fMRI analysis revealed group differences in left insula and anterior cingulate cortex, with the gambling disorder group showing greater reactivity to the gambling cues, but no differences to the food cues. In participants with gambling disorder, craving to gamble correlated positively with gambling cue-related activity in the bilateral insula and ventral striatum, and negatively with functional connectivity between the ventral striatum and the medial prefrontal cortex. Gambling cues, but not food cues, elicit increased brain responses in reward-related circuitry in individuals with gambling disorder (compared with controls), providing support for the incentive sensitization theory of addiction. Activity in the insula co-varied with craving intensity, and may be a target for interventions.
Variability of 128 schizophrenia-associated gene variants across distinct ethnic populations
Authors: Ohi K , Shimada T , Yasuyama T , Uehara T , Kawasaki Y 
Published: January 2017

AbstractSchizophrenia is a common polygenetic disease affecting 0.5–1% of individuals across distinct ethnic populations. PGC-II, the largest genome-wide association study investigating genetic risk factors for schizophrenia, previously identified 128 independent schizophrenia-associated genetic variants (GVs). The current study examined the genetic variability of GVs across ethnic populations. To assess the genetic variability across populations, the 'variability indices' (VIs) of the 128 schizophrenia-associated GVs were calculated. We used 2504 genomes from the 1000 Genomes Project taken from 26 worldwide healthy samples comprising five major ethnicities: East Asian (EAS: n=504), European (EUR: n=503), African (AFR: n=661), American (AMR: n=347) and South Asian (SAS: n=489). The GV with the lowest variability was rs36068923 (VI=1.07). The minor allele frequencies (MAFs) were 0.189, 0.192, 0.256, 0.183 and 0.194 for EAS, EUR, AFR, AMR and SAS, respectively. The GV with the highest variability was rs7432375 (VI=9.46). The MAFs were 0.791, 0.435, 0.041, 0.594 and 0.508 for EAS, EUR, AFR, AMR and SAS, respectively. When we focused on the EAS and EUR population, the allele frequencies of 86 GVs significantly differed between the EAS and EUR (P<3.91 × 10−4). The GV with the highest variability was rs4330281 (P=1.55 × 10−138). The MAFs were 0.023 and 0.519 for the EAS and EUR, respectively. The GV with the lowest variability was rs2332700 (P=9.80 × 10−1). The MAFs were similar between these populations (that is, 0.246 and 0.247 for the EAS and EUR, respectively). Interestingly, the mean allele frequencies of the GVs did not significantly differ between these populations (P>0.05). Although genetic heterogeneities were observed in the schizophrenia-associated GVs across ethnic groups, the combination of these GVs might increase the risk of schizophrenia.
No Clamp Complete Parachute Technique for Ascending Aorta Anastomosis in Hybrid Aortic Arch Debranching Surgery
Authors: Chen I-Ming , Chen Po-Lin , Chang Hsiao-Huang 
Published: January 2017

AbstractThe proper proximal landing zone is a key element for success of endografting in thoracic aortic pathology. If coverage of innominate artery is unavoidable for safe proximal landing, arch debranching surgery is necessary to recruit supra-aortic blood flow before endografting. However, calcified or adhesive ascending aorta makes it difficult to clamp ascending aorta for anastomosis in the first step of arch debranching surgery. We present a novel “no clamp complete parachute technique” to complete this challenging anastomosis.
Mortality, Dispersal, and Habitat Use of Stocked Juvenile Muskellunge in Two Western North Carolina Rivers
Authors: Owensby Dylan P. , Rice James A. , Aday D. Derek 
Published: January 2017

Abstract
The Muskellunge Esox masquinongy is a highly sought-after sport fish that is native to the Tennessee River drainage of western North Carolina. After the extirpation of Muskellunge from North Carolina in the 1950s, the North Carolina Wildlife Resources Commission began a stocking program to re-establish the species and produce viable Muskellunge fisheries in North Carolina. Although stocking efforts have created a Muskellunge fishery in, for example, the French Broad River (where the species was native), there is little evidence of success in North Carolina sections of the New River (where the species was not native). Possible mechanisms inhibiting stocking success are unclear because there is relatively little information available on the juvenile life stage of the Muskellunge, especially in the southern portion of its distribution. We addressed the perceived differences in recruitment between the two fisheries by using telemetry to investigate dispersal, mortality, and habitat use by stocked juvenile Muskellunge. Fifty hatchery-reared, age-0 Muskellunge (282–307 mm TL) were tagged prior to stocking in the New River (fall 2013) and French Broad River (fall 2014). Three months after stocking, known survival of tagged fish was 4% in the New River and 29% in the French Broad River; the survival probability after 3 months was estimated at 9% (range = 4–17%) in the New River and 37% (range = 25–56%) in the French Broad River. Extended survival in the French Broad River was 14% at 252 d poststocking. High dispersal was observed, with maximum individual dispersal of 67.4 km in the New River and 55.5 km in the French Broad River. Habitat suitability analyses indicated that juvenile Muskellunge in the FBR selected shallow nearshore areas with low water velocity, fine substrate, and substantial cover in the form of woody debris and overhanging vegetation. Information on the survival and behavior of stocked Muskellunge can facilitate efforts to successfully manage these fisheries.
Received December 4, 2015; accepted October 3, 2016Published online January 3, 2017