bluuebunny/crossref_metadata_2025_split huggingface dataset:
TGF-beta/atRA-induced Tregs express a selected set of microRNAs involved in the repression of transcripts related to Th17 differentiation
Authors: Schiavinato Josiane Lilian dos Santos , Haddad Rodrigo , Saldanha-Araujo Felipe , Baiochi João , Araujo Amélia Goes , Santos Scheucher Priscila , Covas Dimas Tadeu , Zago Marco Antonio , Panepucci Rodrigo Alexandre 
Published: June 2017

AbstractRegulatory T cells (Tregs) are essential regulators of immune tolerance. atRA and TGF-β can inhibit the polarization of naïve T cells into inflammatory Th17 cells, favoring the generation of stable iTregs, however the regulatory mechanisms involved are not fully understood. In this context, the roles of individual microRNAs in Tregs are largely unexplored. Naïve T cells were immunomagnetically isolated from umbilical cord blood and activated with anti-human CD2/CD3/CD28 beads in the presence of IL-2 alone (CD4Med) or with the addition of TGF-β and atRA (CD4TGF/atRA). As compared to CD4Med, the CD4TGF/atRA condition allowed the generation of highly suppressive CD4+CD25hiCD127−FOXP3hi iTregs. Microarray profiling allowed the identification of a set of microRNAs that are exclusively expressed upon TGF-β/atRA treatment and that are predicted to target a set of transcripts concordantly downregulated. This set of predicted targets were enriched for central components of IL-6/JAK/STAT and AKT-mTOR signaling, whose inhibition is known to play important roles in the generation and function of regulatory lymphocytes. Finally, we show that mimics of exclusively expressed miRs (namely miR-1299 and miR-30a-5p) can reduce the levels of its target transcripts, IL6R and IL6ST (GP130), and increase the percentage of FoxP3+ cells among CD4+CD25+/hi cells.
Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans
Authors: Arai Ritsuko , Sugawara Takeshi , Sato Yuko , Minakuchi Yohei , Toyoda Atsushi , Nabeshima Kentaro , Kimura Hiroshi , Kimura Akatsuki 
Published: June 2017

AbstractIn differentiated cells, chromosomes are packed inside the cell nucleus in an organised fashion. In contrast, little is known about how chromosomes are packed in undifferentiated cells and how nuclear organization changes during development. To assess changes in nuclear organization during the earliest stages of development, we quantified the mobility of a pair of homologous chromosomal loci in the interphase nuclei of Caenorhabditis elegans embryos. The distribution of distances between homologous loci was consistent with a random distribution up to the 8-cell stage but not at later stages. The mobility of the loci was significantly reduced from the 2-cell to the 48-cell stage. Nuclear foci corresponding to epigenetic marks as well as heterochromatin and the nucleolus also appeared around the 8-cell stage. We propose that the earliest global transformation in nuclear organization occurs at the 8-cell stage during C. elegans embryogenesis.
Facile preparation of water-soluble hyperbranched polyamine functionalized multiwalled carbon nanotubes for high-efficiency organic dye removal from aqueous solution
Authors: Hu Lihua , Yang Zhongping , Wang Yaoguang , Li Yan , Fan Dawei , Wu Di , Wei Qin , Du Bin 
Published: June 2017

AbstractWater-soluble hyperbranched polyamine functionalized multiwalled carbon nanotubes nanocomposite (WHPA-OMCNT) was successfully prepared and applied to water remediation in this paper. WHPA-OMCNT was characterized by Fourier transform infrared spectroscopy (FTIR), thermogravimetric analysis (TGA), zeta potential, scanning electron microscopy (SEM) and transmission electron microscope (TEM) analyses. WHPA-OMCNT exhibited excellent adsorption performance for removal of organic dyes e.g., methylene blue (MB), malachite green (MG) and methyl violet (MV). The equilibrium adsorption capacity was 800.0 mg g−1 for MB, 840.3 mg g−1 for MG and 970.9 mg g−1 for MV under the optimal conditions. The pseudo-second order equation and the Langmuir model exhibited good correlation with the adsorption kinetic and isotherm data for all three pollutants, respectively. The thermodynamic results (ΔG < 0, ΔH < 0, ΔS < 0) implied that the adsorption process of MB, MG and MV was feasible, exothermic and spontaneous in nature. A possible adsorption mechanism has been proposed, where H-bonding, electrostatic attraction and π-π stacking interactions dominated the adsorption of the organic dyes. In addition, the excellent reproducibility endowed WHPA-OMCNT with the potential for application in water treatment.
A novel cell membrane affinity sample pretreatment technique for recognition and preconcentration of active components from traditional Chinese medicine
Authors: Bu Yusi , He Xiaoshuang , Hu Qi , Wang Cheng , Xie Xiaoyu , Wang Sicen 
Published: June 2017

AbstractWe describe a novel biomembrane affinity sample pretreatment technique to quickly screen and preconcentrate active components from traditional Chinese medicine (TCM), which adopts cell membrane coated silica particles (CMCSPs) as affinity ligands which benefit the biomembrane’s ability to maximize simulation of drug-receptor interactions in vivo. In this study, the prepared CMCSPs formed by irreversible adsorption of fibroblast growth factor receptor 4 (FGFR4) cell membrane on the surface of silica were characterized using different spectroscopic and imaging instruments. Drug binding experiments showed the excellent adsorption rate and adsorption capacity of FGFR4/CMCSPs compared with non-coated silica particles. The FGFR4/CMCSPs were used as solid-phase extraction sorbents to pretreat the TCM Aconitum szechenyianum Gay. The resultant FGFR4/CMCSPs exhibited good performance. In addition, high selectivity and recognition ability of the FGFR4/CMCSPs were determined by selectivity experiments. Four alkaloid were screened and identified, one of these alkaloid, napellonine, showed favorable anti-tumor activity in preliminary pharmacological verification trials including cell proliferation and molecular docking assays. The proposed cell membrane affinity sample pretreatment method is a reliable, effective and time-saving method for fast screening and enriching active compounds and can be extended to pretreat other TCMs as leading compounds resources.
Significance of Natural Scene Statistics in Understanding the Anisotropies of Perceptual Filling-in at the Blind Spot
Authors: Raman Rajani , Sarkar Sandip 
Published: June 2017

AbstractPsychophysical experiments reveal our horizontal preference in perceptual filling-in at the blind spot. On the other hand, tolerance in filling-in exhibit vertical preference. What causes this anisotropy in our perception? Building upon the general notion that the functional properties of the early visual system are shaped by the innate specification as well as the statistics of the environment, we reasoned that the anisotropy in filling-in could be understood in terms of anisotropy in orientation distribution inherent in natural scene statistics. We examined this proposition by investigating filling-in of bar stimuli in a Hierarchical Predictive Coding model network. The model network, trained with natural images, exhibited anisotropic filling-in performance at the blind spot, which is similar to the findings of psychophysical experiments. We suggest that the over-representation of horizontal contours in the natural scene contributes to the observed horizontal superiority in filling-in and the broader distribution of vertical contours contributes to the observed vertical superiority of tolerance in filling-in. These results indicate that natural scene statistics plays a significant role in determining the filling-in performance at the blind spot and shaping the associated anisotropies.
Dynamics of maternally transferred trace elements in oyster larvae and latent growth effects
Authors: Weng Nanyan , Wang Wen-Xiong 
Published: June 2017

AbstractUnderstanding the maternal transfer of contaminants and their potential effects has great implications for a valid ecological assessment of environmental pollution. However, relevant studies on marine bivalves are very limited. Here, we examined the maternal transfer of trace metals in populations of oysterCrassostrea hongkongensiswith contrasting metal exposure histories. Elevated accumulation of trace metals was observed in eggs and larvae from contaminated sites, suggesting maternal transfer of multi-metals in natural oyster populations. The dynamics of maternally transferred metals was for the first time documented in this study. We demonstrated that excessively transferred metals in contaminated larvae were rapidly eliminated during the early developmental stage, and the efflux rate of metals in larvae was greatly dependent on environmental contamination level. These results provided the first field evidence of modified metal biokinetics in offsprings due to exposure history of adults in marine bivalves. Moreover, egg production was negatively correlated with the contamination level of metals in eggs. There was a further lagged growth in the contaminated larvae, indicating the potential adverse and latent effects of maternally transferred metals on the viability of oyster offspring. Our findings highlighted the importance of transgenerational studies on long-term metal exposure in marine bivalves.
Shaping electromagnetic waves using software-automatically-designed metasurfaces
Authors: Zhang Qian , Wan Xiang , Liu Shuo , Yuan Yin Jia , Zhang Lei , Jun Cui Tie 
Published: June 2017

AbstractWe present a fully digital procedure of designing reflective coding metasurfaces to shape reflected electromagnetic waves. The design procedure is completely automatic, controlled by a personal computer. In details, the macro coding units of metasurface are automatically divided into several types (e.g. two types for 1-bit coding, four types for 2-bit coding, etc.), and each type of the macro coding units is formed by discretely random arrangement of micro coding units. By combining an optimization algorithm and commercial electromagnetic software, the digital patterns of the macro coding units are optimized to possess constant phase difference for the reflected waves. The apertures of the designed reflective metasurfaces are formed by arranging the macro coding units with certain coding sequence. To experimentally verify the performance, a coding metasurface is fabricated by automatically designing two digital 1-bit unit cells, which are arranged in array to constitute a periodic coding metasurface to generate the required four-beam radiations with specific directions. Two complicated functional metasurfaces with circularly- and elliptically-shaped radiation beams are realized by automatically designing 4-bit macro coding units, showing excellent performance of the automatic designs by software. The proposed method provides a smart tool to realize various functional devices and systems automatically.
Secretory laccase 1 in Bemisia tabaci MED is involved in whitefly-plant interaction
Authors: Yang Chun-Hong , Guo Jian-Yang , Chu Dong , Ding Tian-Bo , Wei Ke-Ke , Cheng Deng-Fa , Wan Fang-Hao 
Published: June 2017

AbstractThe whitefly Bemisia tabaci is a phloem-feeding pest that lives predominantly on herbaceous species and causes serious damage to hosts. Whitefly saliva is thought to contain proteins that modulate plant defences and facilitate feeding. A predicted secreted protein, laccase 1 (LAC1), was found in the salivary gland transcriptome of B. tabaci and might be existed in the watery saliva of B. tabaci. As LAC1 has a potential role in detoxification of secondary plant compounds in insects, we speculated that it may participate in the insect’s response to plant defences. Here, we cloned the complete cDNA of LAC1 and found that (1) LAC1 was highly expressed in the salivary gland (SG) and midgut; (2) LAC1 transcript level in head (containing SG) was 2.1 times higher in plant-fed than in diet-fed whiteflies and 1.6 times higher in the head and 23.8 times higher in the midgut of whiteflies that fed on jasmonic acid (JA)-sprayed plants than on control plants; and (3) silencing LAC1 decreased the survival rate of plant-fed whiteflies but had a marginal effect on whiteflies raised on an artificial diet. These results indicate that LAC1 enables whiteflies to overcome the chemical defences of host plants and might act as an effector in saliva.
A functional SUMO-motif in the active site of PIM1 promotes its degradation via RNF4, and stimulates protein kinase activity
Authors: Iyer R. Sumanth , Chatham Lynsey , Sleigh Roger , Meek David W. 
Published: June 2017

AbstractThe PIM1 serine/threonine protein kinase mediates growth factor and survival signalling, and cooperates potently with c-MYC during tumorigenesis. PIM1 is overexpressed in many human cancers and is a promising target for drug development. PIM1 levels are regulated mainly through cytokine-induced transcription and protein degradation, but mechanisms regulating its activity and levels remain largely unexplored. Here, we show that PIM1 is modified in vitro and in cultured cells by the Small ubiquitin-like modifier (SUMO) on two independent sites: K169, within a consensus SUMOylation motif (IK169DE171) in the active site of PIM1, and also at a second promiscuous site. Alanine substitution of E171 (within the consensus motif) abolished SUMOylation, significantly increased the half-life of PIM1, and markedly reduced its ubiquitylation. Mechanistically, SUMOylation promoted ubiquitin-mediated degradation of PIM1 via recruitment of the SUMO-targeted ubiquitin ligase, RNF4. Additionally, SUMOylated PIM1 showed enhanced protein kinase activity in vitro. Interestingly, the E171A mutant was active in vitro but displayed altered substrate specificity in cultured cells, consistent with the idea that SUMOylation may govern PIM1 substrate specificity under certain contexts. Taken together, these data demonstrate that the protein kinase activity and levels of PIM1 can be regulated by a covalent post-translational modification.
Shared and Specific Intrinsic Functional Connectivity Patterns in Unmedicated Bipolar Disorder and Major Depressive Disorder
Authors: Wang Ying , Wang Junjing , Jia Yanbin , Zhong Shuming , Niu Meiqi , Sun Yao , Qi Zhangzhang , Zhao Ling , Huang Li , Huang Ruiwang 
Published: June 2017

AbstractIdentifying brain differences and similarities between bipolar disorder (BD) and major depressive disorder (MDD) is necessary for increasing our understanding of the pathophysiology and for developing more effective treatments. However, the features of whole-brain intrinsic functional connectivity underlying BD and MDD have not been directly compared. We collected resting-state fMRI data from 48 BD patients, 48 MDD patients, and 51 healthy subjects. We constructed voxel-wise whole-brain functional networks and computed regional functional connectivity strength (FCS) using graph-theory and further divided the regional FCS into long-range FCS (lFCS) and short-range FCS (sFCS). Relative to the controls, both the BD and MDD patients showed decreased sFCS in the bilateral precuneus. In addition, the BD patients showed increased and the MDD patients showed decreased lFCS and sFCS in the bilateral cerebellum. The BD patients also showed increased lFCS in the right middle temporal gyrus and increased sFCS in the bilateral thalamus compared to either the MDD patients or the controls. These findings suggest that BD and MDD may have some shared as well as a greater number of specific impairments in their functional connectivity patterns, providing new evidence for the pathophysiology of BD and MDD at the large-scale whole brain connectivity level.
Novel complex of HAT protein TIP60 and nuclear receptor PXR promotes cell migration and adhesion
Authors: Bakshi Karishma , Ranjitha B. , Dubey Shraddha , Jagannadham Jaisri , Jaiswal Bharti , Gupta Ashish 
Published: June 2017

AbstractPXR is a member of nuclear receptor superfamily and a well-characterized mediator of xenobiotic metabolism. The classical mode of PXR activation involves its binding to appropriate ligand and subsequent heterodimerization with its partner RXR. However, various factors such as post-translational modifications and crosstalk with different cellular factors may also regulate the functional dynamics and behavior of PXR. In the present study, we have identified that TIP60, an essential lysine acetyltransferase protein interacts with unliganded PXR and together this complex promotes cell migration & adhesion. TIP60 utilizes its NR Box to interact with LBD region of PXR and acetylates PXR at lysine 170 to induce its intranuclear reorganization. Also, RXR is not required for TIP60-PXR complex formation and this complex does not induce ligand-dependent PXR target gene transactivation. Interestingly, we observed that PXR augments the catalytic activity of TIP60 for histones. This is the first report demonstrating the exclusive interaction of TIP60 with PXR and uncovers a potential role for the TIP60-PXR complex in cell migration and adhesion.
An anti vimentin antibody promotes tube formation
Authors: Jørgensen Mathias Lindh , Møller Carina Kjeldahl , Rasmussen Lasse , Boisen Louise , Pedersen Henrik , Kristensen Peter 
Published: June 2017

AbstractIn recent years, there has been an increasing appreciation of the importance of secreted and extracellular proteins that traditionally have been considered as intracellular components. Vimentin is a highly abundant intermediate filament protein, and its intracellular functions have been investigated in a large number of studies. Recently, however, vimentin has been shown to take part in significant processes outside the cell. Our understanding of the functions of extracellular vimentin is, however, limited. In this study we demonstrate that a vimentin specific antibody, obtained by phage antibody technology, promotes tube formation of endothelial cells in a 2D matrigel assay. By binding vimentin, the antibody increases the tube formation by 21% after 5 hours of incubation. Addition of the antibody directly to cultured endothelial cells does not influence endothelial cell migration or proliferation. The enhanced tube formation can be seen for up to 10 hours where after the effect decreases. It is shown that the antibody-binding site is located on the coil 2 domain of vimentin. To our knowledge this is the first study that demonstrates an enhanced tube formation by binding vimentin in a 2D matrigel assay under normoxic conditions.
Nanotopological plate stimulates osteogenic differentiation through TAZ activation
Authors: Hwang Jun-Ha , Lee Dong-Hyun , Byun Mi Ran , Kim A. Rum , Kim Kyung Min , Park Jung Il , Oh Ho Taek , Hwang Eun Sook , Lee Kyu Back , Hong Jeong-Ho 
Published: June 2017

AbstractThe topographical environment, which mimics the stem cell niche, provides mechanical cues to regulate the differentiation of mesenchymal stem cells (MSC). Diverse topographical variations have been engineered to investigate cellular responses; however, the types of mechanical parameters that affect cells, and their underlying mechanisms remain largely unknown. In this study, we screened nanotopological pillars with size gradient to activate transcriptional coactivator with PDZ binding motif (TAZ), which stimulates osteogenesis of MSC. We observed that a nanotopological plate, 70 nm in diameter, significantly induces osteogenic differentiation with the activation of TAZ. TAZ activation via the nanotopological plate was mediated by actin polymerization and Rho signaling, as evidenced by the cytosolic localization of TAZ under F-actin or Rho kinase inhibitor. The FAK and MAPK pathways also play a role in TAZ activation by the nanotopological plate because the inhibitor of ERK and JNK blocked nanopattern plate induced osteogenic differentiation. Taken together, these results indicate that nanotopology regulates cell differentiation through TAZ activation.
Switching and extension of transmission response, based on bending metamaterials
Authors: Hwang J. S. , Kim Y. J. , Yoo Y. J. , Kim K. W. , Rhee J. Y. , Chen L. Y. , Lee Y. P. 
Published: June 2017

AbstractThe electromagnetically-induced transparency (EIT)-like effects in planar and non-planar metamaterials (MMs) were investigated for microwave (GHz) frequencies. The specific MMs used in this study consisted of a cut-wire resonator and a ring resonator, where were placed on the top and the bottom layers, respectively. A transmission window was produced, due to the interference between bright- and bright-mode coupling. Using the numerical and the experimental results, we demonstrate that the bending of MM leads to enhanced transmission and bandwidth, as well as an additional EIT-like peak. This provides an effective way of realizing the tunable devices, including the switching sensors.
A Facile Green Synthetic Route for the Preparation of Highly Active γ-Al2O3 from Aluminum Foil Waste
Authors: Osman Ahmed I. , Abu-Dahrieh Jehad K. , McLaren Mathew , Laffir Fathima , Nockemann Peter , Rooney David 
Published: June 2017

AbstractA novel green preparation route to prepare nano-mesoporous γ-Al2O3 from AlCl3.6H2O derived from aluminum foil waste and designated as ACFL550 is demonstrated, which showed higher surface area, larger pore volume, stronger acidity and higher surface area compared to γ-Al2O3 that is produced from the commercial AlCl3 precursor, AC550. The produced crystalline AlCl3.6H2O and Al(NO3)3.9H2O in the first stage of the preparation method were characterized by single-crystal XRD, giving two crystal structures, a trigonal (R-3c) and monoclinic (P21/c) structure, respectively. EDX analysis showed that ACFL550 had half the chlorine content (Cl%) relative to AC550, which makes ACFL550 a promising catalyst in acid-catalysed reactions. Pure and modified ACFL550 and AC550 were applied in acid-catalysed reactions, the dehydration of methanol to dimethyl ether and the total methane oxidation reactions, respectively. It was found that ACFL550 showed higher catalytic activity than AC550. This work opens doors for the preparation of highly active and well-structured nano-mesoporous alumina catalysts/supports from aluminum foil waste and demonstrates its application in acid-catalysed reactions.
Density-wave fronts on the brink of wet granular condensation
Authors: Zippelius Andreas , Huang Kai 
Published: June 2017

AbstractDensity-wave fronts in a vibrofluidized wet granular layer undergoing a gas-liquid-like transition are investigated experimentally. The threshold of the instability is governed by the amplitude of the vertical vibrations. Fronts, which are curved into a spiral shape, propagate coherently along the circular rim of the container with leading edges. They are stable beyond a critical distance from the container center. Based on an analysis of the emerging time and length scales, we propose a model for the pattern formation by considering the competition between the time scale for the condensation of wet granular particles from a gas-like state and that of the energy injection resisting this process.