bluuebunny/crossref_metadata_2025_split huggingface dataset:
Cutting management and alfalfa stand age effects on organically grown corn grain yield and soil N availability
Authors: Fernandez Adria L. , Fabrizzi Karina P. , Tautges Nicole E. , Lamb John A. , Sheaffer Craig C. 
Published: August 2017

AbstractAlfalfa is recommended as a rotational crop in corn production, due to its ability to contribute to soil nitrogen (N) and carbon (C) stocks through atmospheric N2fixation and above- and belowground biomass production. However, there is little information on how alfalfa management practices affect contributions to soil and subsequent corn crop yields, and research has not been targeted to organic systems. A study was conducted to determine the effects of alfalfa stand age, cutting frequency and biomass removal on soil C and N status and corn yields at three organically managed Minnesota locations. In one experiment, five cutting treatments were applied in nine environments: two, three and four cuts with biomass removal; three cuts with biomass remaining in place; and a no-cut control. In the other experiment, corn was planted following 1-, 2-, 3- or 4-year-old alfalfa stands and a no-alfalfa control. Yield was measured in the subsequent corn crop. In the cutting experiment, the two- and three-cut treatments with biomass removal reduced soil mineral N by 12.6 and 11.5%, respectively, compared with the control. Potentially mineralizable N (PMN) was not generally affected by cutting treatments. The three-cut no-removal increased potentially mineralizable C by 17% compared with the other treatments, but lowered soil total C in two environments, suggesting a priming effect in which addition of alfalfa biomass stimulated microbial mineralization of native soil C. Although both yields and soil mineral N tended to be higher in treatments where biomass remained in place, this advantage was small and inconsistent, indicating that farmers need not forgo hay harvest to obtain the rotational benefits of an alfalfa stand. The lack of overall correlation between corn grain yields and mineral and potentially mineralizable N suggests that alfalfa N contribution was not the driver of the yield increase in the no-removal treatments. Alfalfa stand age had inconsistent effects on fall-incorporated N and soil N and C parameters. Beyond the first year, increased alfalfa stand age did not increase soil mineral N or PMN. However, corn yield increased following older stands. Yields were 29, 77 and 90% higher following first-, second- and third-year alfalfa stands than the no-alfalfa control, respectively. This indicates that alfalfa may benefit succeeding corn through mechanisms other than N contribution, potentially including P solubilization and weed suppression. These effects have been less studied than N credits, but are of high value in organic cropping systems.
Socioeconomic position and depression in South African adults with long-term health conditions: a longitudinal study of causal pathways
Authors: Elwell-Sutton T. , Folb N. , Clark A. , Fairall L. R. , Lund C. , Bachmann M. O. 
Published: August 2017

Aims.There is convincing evidence that lower socioeconomic position is associated with increased risk of mental disorders. However, the mechanisms involved are not well understood. This study aims to elucidate the causal pathways between socioeconomic position and depression symptoms in South African adults. Two possible causal theories are examined: social causation, which suggests that poor socioeconomic conditions cause mental ill health; and social drift, which suggests that those with poor mental health are more likely to drift into poor socioeconomic circumstances.Methods.The study used longitudinal and cross-sectional observational data on 3904 adults, from a randomised trial carried out in 38 primary health care clinics between 2011 and 2012. Structural equation models and counterfactual mediation analyses were used to examine causal pathways in two directions. First, we examined social causation pathways, with language (a proxy for racial or ethnic category) being treated as an exposure, while education, unemployment, income and depression were treated as sequential mediators and outcomes. Second, social drift was explored with depression treated as a potential influence on health-related quality of life, job loss and, finally, income.Results.The results suggest that the effects of language on depression at baseline, and on changes in depression during follow-up, were mediated through education and income but not through unemployment. Adverse effects of unemployment and job loss on depression appeared to be mostly mediated through income. The effect of depression on decreasing income appeared to be mediated by job loss.Conclusions.These results suggest that both social causation and social selection processes operate concurrently. This raises the possibility that people could get trapped in a vicious cycle in which poor socioeconomic conditions lead to depression, which, in turn, can cause further damage to their economic prospects. This study also suggests that modifiable factors such as income, employment and treatable depression are suitable targets for intervention in the short to medium term, while in the longer term reducing inequalities in education will be necessary to address the deeply entrenched inequalities in South Africa.
Nuclear matrix metalloproteinases: functions resemble the evolution from the intracellular to the extracellular compartment
Authors: Xie Yingqiu , Mustafa Aidana , Yerzhan Adina , Merzhakupova Dalmira , Yerlan Perizat , N Orakov Askarbek , Wang Xiao , Huang Yi , Miao Lixia 
Published: August 2017

AbstractMatrix metalloproteinase (MMP) is defined as an endopeptidase in the extracellular matrix (ECM), which plays essential roles in physiological processes such as organogenesis, wound healing, angiogenesis, apoptosis and motility. MMPs are produced and assembled in the cytoplasm as proenzymes with a cytoplasmic domain and require extracellular activation. MMPs can degrade receptors, extracellular matrix proteins, PARPs and release apoptotic substances. MMPs have been found in the cytosol, organelles and extracellular compartments and recently many types of MMPs have been found in the nucleus. However, the mechanisms and roles of MMPs inside the cell nucleus are still poorly understood. Here we summarized the nuclear localization mechanisms of MMPs and their functions in the nucleus such as apoptosis, tissue remodeling upon injury and cancer progression. Most importantly, we found that nuclear MMPs have evolved to translocate to membrane and target ECM possibly through evolution of nuclear localization signal (NLS), natural selection and anti-apoptotic survival. Thus, the knowledge about the evolution and regulation of nuclear MMPs appears to be essential in understanding a variety of cellular processes along with the development of MMP-targeted therapeutic drugs against the progression of certain diseases.
Fermion-induced quantum critical points
Authors: Li Zi-Xiang , Jiang Yi-Fan , Jian Shao-Kai , Yao Hong 
Published: August 2017

AbstractA unified theory of quantum critical points beyond the conventional Landau–Ginzburg–Wilson paradigm remains unknown. According to Landau cubic criterion, phase transitions should be first-order when cubic terms of order parameters are allowed by symmetry in the Landau–Ginzburg free energy. Here, from renormalization group analysis, we show that second-order quantum phase transitions can occur at such putatively first-order transitions in interacting two-dimensional Dirac semimetals. As such type of Landau-forbidden quantum critical points are induced by gapless fermions, we call them fermion-induced quantum critical points. We further introduce a microscopic model of SU(N) fermions on the honeycomb lattice featuring a transition between Dirac semimetals and Kekule valence bond solids. Remarkably, our large-scale sign-problem-free Majorana quantum Monte Carlo simulations show convincing evidences of a fermion-induced quantum critical points for N = 2, 3, 4, 5 and 6, consistent with the renormalization group analysis. We finally discuss possible experimental realizations of the fermion-induced quantum critical points in graphene and graphene-like materials.
Solution nuclear magnetic resonance spectroscopy on a nanostructured diamond chip
Authors: Kehayias P. , Jarmola A. , Mosavian N. , Fescenko I. , Benito F. M. , Laraoui A. , Smits J. , Bougas L. , Budker D. , Neumann A. , Brueck S. R. J. , Acosta V. M. 
Published: August 2017

AbstractSensors using nitrogen-vacancy centers in diamond are a promising tool for small-volume nuclear magnetic resonance (NMR) spectroscopy, but the limited sensitivity remains a challenge. Here we show nearly two orders of magnitude improvement in concentration sensitivity over previous nitrogen-vacancy and picoliter NMR studies. We demonstrate NMR spectroscopy of picoliter-volume solutions using a nanostructured diamond chip with dense, high-aspect-ratio nanogratings, enhancing the surface area by 15 times. The nanograting sidewalls are doped with nitrogen-vacancies located a few nanometers from the diamond surface to detect the NMR spectrum of roughly 1 pl of fluid lying within adjacent nanograting grooves. We perform 1H and 19F nuclear magnetic resonance spectroscopy at room temperature in magnetic fields below 50 mT. Using a solution of CsF in glycerol, we determine that 4 ± 2 × 1012 19F spins in a 1 pl volume can be detected with a signal-to-noise ratio of 3 in 1 s of integration.
Exit from quiescence displays a memory of cell growth and division
Authors: Wang Xia , Fujimaki Kotaro , Mitchell Geoffrey C. , Kwon Jungeun Sarah , Della Croce Kimiko , Langsdorf Chris , Zhang Hao Helen , Yao Guang 
Published: August 2017

AbstractReactivating quiescent cells to proliferate is critical to tissue repair and homoeostasis. Quiescence exit is highly noisy even for genetically identical cells under the same environmental conditions. Deregulation of quiescence exit is associated with many diseases, but cellular mechanisms underlying the noisy process of exiting quiescence are poorly understood. Here we show that the heterogeneity of quiescence exit reflects a memory of preceding cell growth at quiescence induction and immediate division history before quiescence entry, and that such a memory is reflected in cell size at a coarse scale. The deterministic memory effects of preceding cell cycle, coupled with the stochastic dynamics of an Rb-E2F bistable switch, jointly and quantitatively explain quiescence-exit heterogeneity. As such, quiescence can be defined as a distinct state outside of the cell cycle while displaying a sequential cell order reflecting preceding cell growth and division variations.
Live-cell p53 single-molecule binding is modulated by C-terminal acetylation and correlates with transcriptional activity
Authors: Loffreda Alessia , Jacchetti Emanuela , Antunes Sofia , Rainone Paolo , Daniele Tiziana , Morisaki Tatsuya , Bianchi Marco E. , Tacchetti Carlo , Mazza Davide 
Published: August 2017

AbstractLive-cell microscopy has highlighted that transcription factors bind transiently to chromatin but it is not clear if the duration of these binding interactions can be modulated in response to an activation stimulus, and if such modulation can be controlled by post-translational modifications of the transcription factor. We address this question for the tumor suppressor p53 by combining live-cell single-molecule microscopy and single cell in situ measurements of transcription and we show that p53-binding kinetics are modulated following genotoxic stress. The modulation of p53 residence times on chromatin requires C-terminal acetylation—a classical mark for transcriptionally active p53—and correlates with the induction of transcription of target genes such as CDKN1a. We propose a model in which the modification state of the transcription factor determines the coupling between transcription factor abundance and transcriptional activity by tuning the transcription factor residence time on target sites.
GADD45A plays a protective role against temozolomide treatment in glioblastoma cells
Authors: Wang Hsiao-Han , Chang Tsuey-Yu , Lin Wei-Chen , Wei Kuo-Chen , Shin Jyh-Wei 
Published: August 2017

AbstractGlioblastoma multiforme (GBM) is one of the most aggressive cancers. Despite recent advances in multimodal therapies, high-grade glioma remains fatal. Temozolomide (TMZ) is an alkylating agent used worldwide for the clinical treatment of GBM; however, the innate and acquired resistance of GBM limits its application. Here, we found that TMZ inhibited the proliferation and induced the G2/M arrest of GBM cells. Therefore, we performed microarrays to identify the cell cycle- and apoptosis-related genes affected by TMZ. Notably, GADD45A was found to be up-regulated by TMZ in both cell cycle and apoptosis arrays. Furthermore, GADD45A knockdown (GADD45Akd) enhanced the cell growth arrest and cell death induced by TMZ, even in natural (T98) and adapted (TR-U373) TMZ-resistant cells. Interestingly, GADD45Akd decreased the expression of O6-methylguanine-DNA methyltransferase (MGMT) in TMZ-resistant cells (T98 and TR-U373). In MGMT-deficient/TMZ-sensitive cells (U87 and U373), GADD45Akd decreased TMZ-induced TP53 expression. Thus, in this study, we investigated the genes influenced by TMZ that were important in GBM therapy, and revealed that GADD45A plays a protective role against TMZ treatment which may through TP53-dependent and MGMT-dependent pathway in TMZ-sensitive and TMZ-resistant GBM, respectively. This protective role of GADD45A against TMZ treatment may provide a new therapeutic strategy for GBM treatment.
Assessment of the announced North Korean nuclear test using long-range atmospheric transport and dispersion modelling
Authors: De Meutter Pieter , Camps Johan , Delcloo Andy , Termonia Piet 
Published: August 2017

AbstractOn 6 January 2016, the Democratic People’s Republic of Korea announced to have conducted its fourth nuclear test. Analysis of the corresponding seismic waves from the Punggye-ri nuclear test site showed indeed that an underground man-made explosion took place, although the nuclear origin of the explosion needs confirmation. Seven weeks after the announced nuclear test, radioactive xenon was observed in Japan by a noble gas measurement station of the International Monitoring System. In this paper, atmospheric transport modelling is used to show that the measured radioactive xenon is compatible with a delayed release from the Punggye-ri nuclear test site. An uncertainty quantification on the modelling results is given by using the ensemble method. The latter is important for policy makers and helps advance data fusion, where different nuclear Test-Ban-Treaty monitoring techniques are combined.
GRACE satellite observations reveal the severity of recent water over-consumption in the United States
Authors: Solander Kurt C. , Reager John T. , Wada Yoshihide , Famiglietti James S. , Middleton Richard S. 
Published: August 2017

AbstractChanges in the climate and population growth will critically impact the future supply and demand of water, leading to large uncertainties for sustainable resource management. In the absence of on-the-ground measurements to provide spatially continuous, high-resolution information on water supplies, satellite observations can provide essential insight. Here, we develop a technique using observations from the Gravity Recovery and Climate Experiment (GRACE) satellite to evaluate the sustainability of surface water and groundwater use over the continental United States. We determine the annual total water availability for 2003–2015 using the annual variability in GRACE-derived total water storage for 18 major watersheds. The long-term sustainable water quantity available to humans is calculated by subtracting an annual estimate of the water needed to maintain local ecosystems, and the resulting water volumes are compared to reported consumptive water use to determine a sustainability fraction. We find over-consumption is highest in the southwest US, where increasing stress trends were observed in all five basins and annual consumptive use exceeded 100% availability twice in the Lower Colorado basin during 2003–2015. By providing a coarse-scale evaluation of sustainable water use from satellite and ground observations, the established framework serves as a blueprint for future large-scale water resource monitoring.
Bioactivity-Guided Fractionation of Pine Needle Reveals Catechin as an Anti-hypertension Agent via Inhibiting Angiotensin-Converting Enzyme
Authors: He Jian 
Published: August 2017

AbstractHypertension has been recognized as one of the highest risk factors for cardiovascular diseases. Anti-hypertension agent screening and development has been recognized as a pharmaceutical therapy approach for the cardiovascular diseases treatment. Many kinds of traditional Chinese medicines, such as pine needle, have been used for the treatment of hypertension for a long time, but the bioactive ingredients which responsible for their therapeutic effectiveness are remain unclear. Therefore, screening bioactive chemicals in natural sources is still the most straightforward strategy for novel Angiotensin-converting enzyme inhibitor (ACEi)-based anti-hypertension agents discovery. In this study, we demonstrated a bioactivity-guided fractionation strategy for identifying bioactive fractions and chemicals from pine needle based on LC/MS assay as well as elucidating their mechanisms of pharmacological activity. And we found out the compound in pine needle extracts being ACE-inhibitory active is catechin. When ACE activity was assayed in rat tissue membranes, it was observed that catechin demonstrate ACE inhibition in kidney, lung and testes tissue. All these presents catechin in pine needle could be a potential cardiovascular medicine.
Neural, physiological, and behavioral correlates of visuomotor cognitive load
Authors: Hosseini S. M. Hadi , Bruno Jennifer L. , Baker Joseph M. , Gundran Andrew , Harbott Lene K. , Gerdes J. Christian , Reiss Allan L. 
Published: August 2017

AbstractVisuomotor ability is quite crucial for everyday functioning, particularly in driving and sports. While there is accumulating evidence regarding neural correlates of visuomotor transformation, less is known about the brain regions that accommodate visuomotor mapping under different cognitive demands. We concurrently measured cortical activity and pupillary response, using functional near infrared spectroscopy (fNIRS) and eye-tracking glasses, to examine the neural systems linked to pupil dilation under varying cognitive demands. Twenty-three healthy adults performed two sessions of a navigation task, in which the cognitive load was manipulated by either reversing the visuomotor mapping or increasing the speed of the moving object. We identified a region in the right superior parietal lobule that responded to both types of visuomotor load and its activity was associated with larger pupillary response and better performance in the task. Our multimodal analyses suggest that activity in this region arises from the need for increased attentional effort and alertness for visuomotor control and is an ideal candidate for objective measurement of visuomotor cognitive load. Our data extend previous findings connecting changes in pupil diameter to neural activity under varying cognitive demand and have important implications for examining brain-behavior associations in real-world tasks such as driving and sports.
Infiltration of M1, but not M2, macrophages is impaired after unilateral ureter obstruction in Nrf2-deficient mice
Authors: Sogawa Yuji , Nagasu Hajime , Iwase Shigeki , Ihoriya Chieko , Itano Seiji , Uchida Atsushi , Kidokoro Kengo , Taniguchi Shun’ichiro , Takahashi Masafumi , Satoh Minoru , Sasaki Tamaki , Suzuki Takafumi , Yamamoto Masayuki , Horng Tiffany , Kashihara Naoki 
Published: August 2017

AbstractChronic inflammation can be a major driver of the failure of a variety of organs, including chronic kidney disease (CKD). The NLR family pyrin domain-containing 3 (NLRP3) inflammasome has been shown to play a pivotal role in inflammation in a mouse kidney disease model. Nuclear factor erythroid 2-related factor 2 (Nrf2), the master transcription factor for anti-oxidant responses, has also been implicated in inflammasome activation under physiological conditions. However, the mechanism underlying inflammasome activation in CKD remains elusive. Here, we show that the loss of Nrf2 suppresses fibrosis and inflammation in a unilateral ureter obstruction (UUO) model of CKD in mice. We consistently observed decreased expression of inflammation-related genes NLRP3 and IL-1β in Nrf2-deficient kidneys after UUO. Increased infiltration of M1, but not M2, macrophages appears to mediate the suppression of UUO-induced CKD symptoms. Furthermore, we found that activation of the NLRP3 inflammasome is attenuated in Nrf2-deficient bone marrow–derived macrophages. These results demonstrate that Nrf2-related inflammasome activation can promote CKD symptoms via infiltration of M1 macrophages. Thus, we have identified the Nrf2 pathway as a promising therapeutic target for CKD.
The integration of Gβ and MAPK signaling cascade in zygote development
Authors: Yuan Guo-Liang , Li Hong-Ju , Yang Wei-Cai 
Published: August 2017

AbstractCells respond to many signals with a limited number of signaling components. Heterotrimeric G proteins and MAPK cascades are universally used by eukaryotic cells to transduce signals in various developmental processes or stress responses by activating different effectors. MAPK cascade is integrated with G proteins by scaffold protein during plant immunity. However, the molecular relationship between G proteins and MAPK modules in plant development is still unclear. In this study, we demonstrate that Arabidopsis Gβ protein AGB1 interacts with MPK3 and 6, MKK4 and 5, as well as the regulatory domains of YODA (YDA), the upstream MEKK of MKK4/5. Remarkably, YDA interacts with the plasma membrane associated SHORT SUSPENSOR (SSP) through its N- and C-terminal region in vitro and in vivo. Additionally, genetic analysis shows that AGB1 functions together with MPK3/6 signaling cascade during the asymmetric division of the zygote. These data indicate that Gβ may function likely as a scaffold, through direct physical interaction with the components of the MPK signaling module in plant development. Our results provide new insights into the molecular functions of G protein and will advance the understanding of the complex mechanism of kinase signaling cascades.
Effect of the land area elevation on the collective choice in ants
Authors: Bles Olivier , Lozet Nathanaël , de Biseau Jean-Christophe , Campo Alexandre , Deneubourg Jean-Louis 
Published: August 2017

AbstractCollective decisions regarding food source exploitation in social insects are influenced by a range of parameters, from source quality to individual preference and social information sharing. Those regarding the elevation of the physical trail towards a food source have been neglected. In this work, we investigated the effect of ascending and descending paths from the nest to a food source on collective choice in two ant species Lasius niger and Myrmica rubra. Our hypothesis that returning loaded with food from the high source is more energy efficient was validated by choice experiments: when the sources are simultaneously introduced the high food source is preferentially exploited by both species. The flexibility of colony response was then tested by introducing the preferred source (high) incidentally, after recruitment towards the down food source began. Despite the well-known lack of flexibility of L. niger, both species showed the ability to reallocate their foraging workforce towards the highest food source. The collective choice and the flexibility are based on the difference between the u-turn rates when foragers are facing the ascending or descending branch. We discuss these results in terms of species-specifics characteristics and ecological context.