bluuebunny/crossref_metadata_2025_split huggingface dataset:
Reliability and Validity of Nonsymbolic and Symbolic Comparison Tasks in School-Aged Children
Authors: Castro Danilka , Estévez Nancy , Gómez David , Dartnell Pablo Ricardo 
Published: December 2017

AbstractBasic numerical processing has been regularly assessed using numerical nonsymbolic and symbolic comparison tasks. It has been assumed that these tasks index similar underlying processes. However, the evidence concerning the reliability and convergent validity across different versions of these tasks is inconclusive. We explored the reliability and convergent validity between two numerical comparison tasks (nonsymbolic vs. symbolic) in school-aged children. The relations between performance in both tasks and mental arithmetic were described and a developmental trajectories’ analysis was also conducted. The influence of verbal and visuospatial working memory processes and age was controlled for in the analyses. Results show significant reliability (p < .001) between Block 1 and 2 for nonsymbolic task (global adjusted RT (adjRT): r = .78, global efficiency measures (EMs): r = .74) and, for symbolic task (adjRT: r = .86, EMs: r = .86). Also, significant convergent validity between tasks (p < .001) for both adjRT (r = .71) and EMs (r = .70) were found after controlling for working memory and age. Finally, it was found the relationship between nonsymbolic and symbolic efficiencies varies across the sample’s age range. Overall, these findings suggest both tasks index the same underlying cognitive architecture and are appropriate to explore the Approximate Number System (ANS) characteristics. The evidence supports the central role of ANS in arithmetic efficiency and suggests there are differences across the age range assessed, concerning the extent to which efficiency in nonsymbolic and symbolic tasks reflects ANS acuity.
Cajal, Psychologist of Science
Authors: Anaya-Reig Nuria , Romo Manuela 
Published: December 2017

AbstractThis paper presents abundant empirical evidence to support the view that Santiago Ramón y Cajal was a pioneer of the emerging Psychology of Science discipline. Narrative analysis of his autobiography (Recollections of my Life) and some of his unspecialized works (Advice for a Young Investigator, The World from an Eighty-Year-Old’s Point of View, and Café Chats) revealed that the Spanish histologist’s interest in the psychology of scientists was part and parcel of a high-level, intellectual self-regulation strategy he applied on his path to success. This research led him to document various psychological conclusions about scientists in writing, so as to encourage, guide, and facilitate the work of junior researchers. Current knowledge of the Psychology of Science has confirmed many of the Nobel laureate’s observations about psychosocial aspects of scientists, scientific reasoning, and creativity.
Insecticide Seed Treatments as Safeners to Drift Rates of Herbicides in Soybean and Grain Sorghum
Authors: Steppig Nicholas R. , Norsworthy Jason K. , Scott Robert C. , Lorenz Gus M. 
Published: December 2017

AbstractPrevious research has shown that some insecticide seed treatments provide safening effects in rice following exposure to low rates of the herbicides glyphosate and imazethapyr. However, no research has been conducted to determine whether a similar effect may be seen in soybean or grain sorghum, two important rotational crops across the Midsouth. To evaluate the potential safening effects of insecticide seed treatments in these two crops, field trials were conducted in Marianna, AR, in 2015 and 2016, and near Colt, AR, in 2016. In soybean, glyphosate, glufosinate, 2,4-D, dicamba, halosulfuron, mesotrione, tembotrione, and propanil were applied at low rates to simulate drift events, in combination with the insecticide seed treatments thiamethoxam and clothianidin at labeled rates. In grain sorghum, glyphosate, imazethapyr, and quizalofop were applied at low rates in combination with the insecticide seed treatments thiamethoxam, clothianidin, and imidacloprid at labeled rates. Injury reduction was seen at 1 site-year for glyphosate, glufosinate, 2,4-D, dicamba, mesotrione, and tembotrione, and at 2 of 3 site-years for halosulfuron. At 1 site-year, the safening in halosulfuron resulted in increases in both crop height and yield. In grain sorghum, reducing injury via seed treatments was generally more successful. All three herbicides applied in sorghum displayed instances of injury reduction when seed treatments were used at 1 or more site-years, including reducing injury upward of 40% in the case of quizalofop+clothianidin at Marianna in 2016. For 2 site-years, injury reduction through the use of insecticides resulted in increases in crop height and grain yield in grain sorghum compared with no insecticide use. Although the degree of safening seen varied depending on site-year in both crops, growers who use insecticide seed treatments on an annual basis may expect to see a safening effect from drift events of most herbicides evaluated in both soybean and grain sorghum.
HIV-1-associated inflammation and antiretroviral therapy regulate astrocyte endoplasmic reticulum stress responses
Authors: Nooka Shruthi , Ghorpade Anuja 
Published: December 2017

AbstractAntiretroviral (ARV) therapy (ART) has effectively suppressed the incidence of human immunodeficiency virus (HIV)-associated dementia in HIV-1 positive individuals. However, the prevalence of more subtle forms of neurocognitive dysfunction continues to escalate. Recently, endoplasmic reticulum (ER) stress has been linked to many neurological diseases; yet, its role in HIV/neuroAIDS remains largely unexplored. Furthermore, upregulation of astrocyte elevated gene-1 (AEG-1), a novel HIV-1 inducible gene, along with ER stress markers in a Huntington’s disease model, suggests a possible role in HIV-associated ER stress. The current study is focused on unfolded protein responses (UPRs) and AEG-1 regulation in primary human astrocytes exposed to HIV-associated neurocognitive disorders (HAND)-relevant stimuli (HIV-1 virions, inflammation and ARV drugs). Interleukin (IL)-1β and the nucleoside reverse transcriptase inhibitor abacavir upregulated expression of ER stress markers in human astrocytes, including binding immunoglobulin protein (BiP), C/EBP homologous protein (CHOP), and calnexin. In addition, IL-1β activated all three well-known UPR pathways: protein kinase RNA-like ER kinase (PERK); activating transcription factor 6 (ATF-6); and inositol-requiring enzyme 1α (IRE1α). AEG-1 upregulation correlated to ER stress and demonstrated astrocyte AEG-1 interaction with the calcium-binding chaperone, calnexin. IL-1β and abacavir enhanced intracellular calcium signaling in astrocytes in the absence of extracellular calcium, illustrating ER-associated calcium release. Alternatively, calcium evoked in response to HAND-relevant stimuli led to mitochondrial permeability transition pore (mPTP) opening in human astrocytes. Importantly, IL-1β- and abacavir-induced UPR and mPTP opening were inhibited by the intracellular calcium chelation, indicating the critical role of calcium signaling in HAND-relevant ER stress in astrocytes. In summary, our study highlights that ARV drugs and IL-1β induced UPR, AEG-1 expression, intracellular calcium, and mitochondrial depolarization in astrocytes. This study uncovers astrocyte ER stress as a novel therapeutic target in the management of HIV-1-associated neurotoxicity and possibly in the treatment of neuroAIDS.
Soft electrostatic trapping in nanofluidics
Authors: Gerspach Michael A. , Mojarad Nassir , Sharma Deepika , Pfohl Thomas , Ekinci Yasin 
Published: December 2017

AbstractTrapping and manipulation of nano-objects in solution are of great interest and have emerged in a plethora of fields spanning from soft condensed matter to biophysics and medical diagnostics. We report on establishing a nanofluidic system for reliable and contact-free trapping as well as manipulation of charged nano-objects using elastic polydimethylsiloxane (PDMS)-based materials. This trapping principle is based on electrostatic repulsion between charged nanofluidic walls and confined charged objects, called geometry-induced electrostatic (GIE) trapping. With gold nanoparticles as probes, we study the performance of the devices by measuring the stiffness and potential depths of the implemented traps, and compare the results with numerical simulations. When trapping 100 nm particles, we observe potential depths of up to Q≅24 kBT that provide stable trapping for many days. Taking advantage of the soft material properties of PDMS, we actively tune the trapping strength and potential depth by elastically reducing the device channel height, which boosts the potential depth up to Q~200 kBT, providing practically permanent contact-free trapping. Due to a high-throughput and low-cost fabrication process, ease of use, and excellent trapping performance, our method provides a reliable platform for research and applications in study and manipulation of single nano-objects in fluids.
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
Authors: Yang Xiaohan , Hu Rongbin , Yin Hengfu , Jenkins Jerry , Shu Shengqiang , Tang Haibao , Liu Degao , Weighill Deborah A. , Cheol Yim Won , Ha Jungmin , Heyduk Karolina , Goodstein David M. , Guo Hao-Bo , Moseley Robert C. , Fitzek Elisabeth , Jawdy Sara , Zhang Zhihao , Xie Meng , Hartwell James , Grimwood Jane , Abraham Paul E. , Mewalal Ritesh , Beltrán Juan D. , Boxall Susanna F. , Dever Louisa V. , Palla Kaitlin J. , Albion Rebecca , Garcia Travis , Mayer Jesse A. , Don Lim Sung , Man Wai Ching , Peluso Paul , Van Buren Robert , De Paoli Henrique Cestari , Borland Anne M. , Guo Hong , Chen Jin-Gui , Muchero Wellington , Yin Yanbin , Jacobson Daniel A. , Tschaplinski Timothy J. , Hettich Robert L. , Ming Ray , Winter Klaus , Leebens-Mack James H. , Smith J. Andrew C. , Cushman John C. , Schmutz Jeremy , Tuskan Gerald A. 
Published: December 2017

AbstractCrassulacean acid metabolism (CAM) is a water-use efficient adaptation of photosynthesis that has evolved independently many times in diverse lineages of flowering plants. We hypothesize that convergent evolution of protein sequence and temporal gene expression underpins the independent emergences of CAM from C3 photosynthesis. To test this hypothesis, we generate a de novo genome assembly and genome-wide transcript expression data for Kalanchoë fedtschenkoi, an obligate CAM species within the core eudicots with a relatively small genome (~260 Mb). Our comparative analyses identify signatures of convergence in protein sequence and re-scheduling of diel transcript expression of genes involved in nocturnal CO2 fixation, stomatal movement, heat tolerance, circadian clock, and carbohydrate metabolism in K. fedtschenkoi and other CAM species in comparison with non-CAM species. These findings provide new insights into molecular convergence and building blocks of CAM and will facilitate CAM-into-C3 photosynthesis engineering to enhance water-use efficiency in crops.
Spatial competition constrains resistance to targeted cancer therapy
Authors: Bacevic Katarina , Noble Robert , Soffar Ahmed , Wael Ammar Orchid , Boszonyik Benjamin , Prieto Susana , Vincent Charles , Hochberg Michael E. , Krasinska Liliana , Fisher Daniel 
Published: December 2017

AbstractAdaptive therapy (AT) aims to control tumour burden by maintaining therapy-sensitive cells to exploit their competition with resistant cells. This relies on the assumption that resistant cells have impaired cellular fitness. Here, using a model of resistance to a pharmacological cyclin-dependent kinase inhibitor (CDKi), we show that this assumption is valid when competition between cells is spatially structured. We generate CDKi-resistant cancer cells and find that they have reduced proliferative fitness and stably rewired cell cycle control pathways. Low-dose CDKi outperforms high-dose CDKi in controlling tumour burden and resistance in tumour spheroids, but not in monolayer culture. Mathematical modelling indicates that tumour spatial structure amplifies the fitness penalty of resistant cells, and identifies their relative fitness as a critical determinant of the clinical benefit of AT. Our results justify further investigation of AT with kinase inhibitors.
CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing
Authors: Moreno-Mateos Miguel A. , Fernandez Juan P. , Rouet Romain , Vejnar Charles E. , Lane Maura A. , Mis Emily , Khokha Mustafa K. , Doudna Jennifer A. , Giraldez Antonio J. 
Published: December 2017

AbstractCpf1 is a novel class of CRISPR-Cas DNA endonucleases, with a wide range of activity across different eukaryotic systems. Yet, the underlying determinants of this variability are poorly understood. Here, we demonstrate that LbCpf1, but not AsCpf1, ribonucleoprotein complexes allow efficient mutagenesis in zebrafish and Xenopus. We show that temperature modulates Cpf1 activity by controlling its ability to access genomic DNA. This effect is stronger on AsCpf1, explaining its lower efficiency in ectothermic organisms. We capitalize on this property to show that temporal control of the temperature allows post-translational modulation of Cpf1-mediated genome editing. Finally, we determine that LbCpf1 significantly increases homology-directed repair in zebrafish, improving current approaches for targeted DNA integration in the genome. Together, we provide a molecular understanding of Cpf1 activity in vivo and establish Cpf1 as an efficient and inducible genome engineering tool across ectothermic species.
Atlantic deep water provenance decoupled from atmospheric CO2 concentration during the lukewarm interglacials
Authors: Howe Jacob N. W. , Piotrowski Alexander M. 
Published: December 2017

AbstractIce core records show that atmospheric CO2 concentrations and Antarctic temperature were lower during the ‘lukewarm interglacials’ from 800 to 430 ka than the subsequent five interglacials. These different interglacial ‘strengths’ have been hypothesised to be controlled by Antarctic overturning circulation. How these variations in Antarctic overturning relate to Northern Atlantic overturning circulation, a major driver of Northern Hemisphere climate, is uncertain. Here we present a high-resolution record of authigenic neodymium isotopes—a water mass tracer that is independent of biological processes—and use it to reconstruct Atlantic overturning circulation during the last 800 kyr. This record reveals a similar proportion of North Atlantic Deep Water during the ‘lukewarm interglacials’ and the more recent interglacials. This observation suggests that the provenance of deep water in the Atlantic Ocean can be decoupled from ventilation state of the Southern Ocean and consequently the atmospheric concentration of carbon dioxide.
Spectroscopic identification of active sites for the oxygen evolution reaction on iron-cobalt oxides
Authors: Smith Rodney D. L. , Pasquini Chiara , Loos Stefan , Chernev Petko , Klingan Katharina , Kubella Paul , Mohammadi Mohammad Reza , Gonzalez-Flores Diego , Dau Holger 
Published: December 2017

AbstractThe emergence of disordered metal oxides as electrocatalysts for the oxygen evolution reaction and reports of amorphization of crystalline materials during electrocatalysis reveal a need for robust structural models for this class of materials. Here we apply a combination of low-temperature X-ray absorption spectroscopy and time-resolved in situ X-ray absorption spectroelectrochemistry to analyze the structure and electrochemical properties of a series of disordered iron-cobalt oxides. We identify a composition-dependent distribution of di-μ-oxo bridged cobalt–cobalt, di-μ-oxo bridged cobalt–iron and corner-sharing cobalt structural motifs in the composition series. Comparison of the structural model with (spectro)electrochemical data reveals relationships across the composition series that enable unprecedented assignment of voltammetric redox processes to specific structural motifs. We confirm that oxygen evolution occurs at two distinct reaction sites, di-μ-oxo bridged cobalt–cobalt and di-μ-oxo bridged iron–cobalt sites, and identify direct and indirect modes-of-action for iron ions in the mixed-metal compositions.
Exceptional increase in the creep life of magnesium rare-earth alloys due to localized bond stiffening
Authors: Choudhuri Deep , Srinivasan Srivilliputhur G. , Gibson Mark A. , Zheng Yufeng , Jaeger David L. , Fraser Hamish L. , Banerjee Rajarshi 
Published: December 2017

AbstractSeveral recent papers report spectacular, and unexpected, order of magnitude improvement in creep life of alloys upon adding small amounts of elements like zinc. This microalloying effect raises fundamental questions regarding creep deformation mechanisms. Here, using atomic-scale characterization and first principles calculations, we attribute the 600% increase in creep life in a prototypical Mg–rare earth (RE)–Zn alloy to multiple mechanisms caused by RE–Zn bonding—stabilization of a large volume fraction of strengthening precipitates on slip planes, increase in vacancy diffusion barrier, reduction in activated cross-slip, and enhancement of covalent character and bond strength around Zn solutes along the c-axis of Mg. We report that increased vacancy diffusion barrier, which correlates with the observed 25% increase in interplanar bond stiffness, primarily enhances the high-temperature creep life. Thus, we demonstrate that an approach of local, randomized tailoring of bond stiffness via microalloying enhances creep performance of alloys.
An assessment of the global impact of 21st century land use change on soil erosion
Authors: Borrelli Pasquale , Robinson David A. , Fleischer Larissa R. , Lugato Emanuele , Ballabio Cristiano , Alewell Christine , Meusburger Katrin , Modugno Sirio , Schütt Brigitta , Ferro Vito , Bagarello Vincenzo , Oost Kristof Van , Montanarella Luca , Panagos Panos 
Published: December 2017

AbstractHuman activity and related land use change are the primary cause of accelerated soil erosion, which has substantial implications for nutrient and carbon cycling, land productivity and in turn, worldwide socio-economic conditions. Here we present an unprecedentedly high resolution (250 × 250 m) global potential soil erosion model, using a combination of remote sensing, GIS modelling and census data. We challenge the previous annual soil erosion reference values as our estimate, of 35.9 Pg yr−1 of soil eroded in 2012, is at least two times lower. Moreover, we estimate the spatial and temporal effects of land use change between 2001 and 2012 and the potential offset of the global application of conservation practices. Our findings indicate a potential overall increase in global soil erosion driven by cropland expansion. The greatest increases are predicted to occur in Sub-Saharan Africa, South America and Southeast Asia. The least developed economies have been found to experience the highest estimates of soil erosion rates.
Semiconductor SERS enhancement enabled by oxygen incorporation
Authors: Zheng Zuhui , Cong Shan , Gong Wenbin , Xuan Jinnan , Li Guohui , Lu Weibang , Geng Fengxia , Zhao Zhigang 
Published: December 2017

AbstractSemiconductor-based surface-enhanced Raman spectroscopy (SERS) substrates represent a new frontier in the field of SERS. However, the application of semiconductor materials as SERS substrates is still seriously impeded by their low SERS enhancement and inferior detection sensitivity, especially for non-metal-oxide semiconductor materials. Herein, we demonstrate a general oxygen incorporation-assisted strategy to magnify the semiconductor substrate–analyte molecule interaction, leading to significant increase in SERS enhancement for non-metal-oxide semiconductor materials. Oxygen incorporation in MoS2 even with trace concentrations can not only increase enhancement factors by up to 100,000-fold compared with oxygen-unincorporated samples but also endow MoS2 with low limit of detection below 10−7 M. Intriguingly, combined with the findings in previous studies, our present results indicate that both oxygen incorporation and extraction processes can result in SERS enhancement, probably due to the enhanced charge-transfer resonance as well as exciton resonance arising from the judicious control of oxygen admission in semiconductor substrate.
Hippocampal oxytocin receptors are necessary for discrimination of social stimuli
Authors: Raam Tara , McAvoy Kathleen M. , Besnard Antoine , Veenema Alexa H. , Sahay Amar 
Published: December 2017

AbstractOxytocin receptor (Oxtr) signaling in neural circuits mediating discrimination of social stimuli and affiliation or avoidance behavior is thought to guide social recognition. Remarkably, the physiological functions of Oxtrs in the hippocampus are not known. Here we demonstrate using genetic and pharmacological approaches that Oxtrs in the anterior dentate gyrus (aDG) and anterior CA2/CA3 (aCA2/CA3) of mice are necessary for discrimination of social, but not non-social, stimuli. Further, Oxtrs in aCA2/CA3 neurons recruit a population-based coding mechanism to mediate social stimuli discrimination. Optogenetic terminal-specific attenuation revealed a critical role for aCA2/CA3 outputs to posterior CA1 for discrimination of social stimuli. In contrast, aCA2/CA3 projections to aCA1 mediate discrimination of non-social stimuli. These studies identify a role for an aDG-CA2/CA3 axis of Oxtr expressing cells in discrimination of social stimuli and delineate a pathway relaying social memory computations in the anterior hippocampus to the posterior hippocampus to guide social recognition.
Crystal structure of an RNA-cleaving DNAzyme
Authors: Liu Hehua , Yu Xiang , Chen Yiqing , Zhang Jing , Wu Baixing , Zheng Lina , Haruehanroengra Phensinee , Wang Rui , Li Suhua , Lin Jinzhong , Li Jixi , Sheng Jia , Huang Zhen , Ma Jinbiao , Gan Jianhua 
Published: December 2017

AbstractIn addition to storage of genetic information, DNA can also catalyze various reactions. RNA-cleaving DNAzymes are the catalytic DNAs discovered the earliest, and they can cleave RNAs in a sequence-specific manner. Owing to their great potential in medical therapeutics, virus control, and gene silencing for disease treatments, RNA-cleaving DNAzymes have been extensively studied; however, the mechanistic understandings of their substrate recognition and catalysis remain elusive. Here, we report three catalytic form 8–17 DNAzyme crystal structures. 8–17 DNAzyme adopts a V-shape fold, and the Pb2+ cofactor is bound at the pre-organized pocket. The structures with Pb2+ and the modification at the cleavage site captured the pre-catalytic state of the RNA cleavage reaction, illustrating the unexpected Pb2+-accelerated catalysis, intrinsic tertiary interactions, and molecular kink at the active site. Our studies reveal that DNA is capable of forming a compacted structure and that the functionality-limited bio-polymer can have a novel solution for a functional need in catalysis.