bluuebunny/crossref_metadata_2025_split huggingface dataset:
Bull kelp (Nereocystis luetkeana) growth rates as climate stress indicators for Canada’s Pacific coast
Authors: Pontier Ondine , Rhoades Olivia , Twist Brenton , Okamoto Dan , Hessing-Lewis Margot 
Published: October 2024

Primary producers’ growth rates are ideal bioindicators of changing climate due to their sensitivity to environmental conditions. On the Central Coast of British Columbia, we assessed growth rates of Nereocystis luetkeana, a canopy-forming annual kelp, by assessing baseline variability in growth rates and their response to environmental conditions of over 600 individuals and across three sites (2016–2019). Optimal growth rates for blades and stipes (∼13–14 cm/day) occurred within a narrow range of local environmental conditions. Growth decreased at temperatures > 10 °C, below 1 µm/L nitrate concentration, and surface light availability reduced blade growth at low and high levels (daily light integral or DLI <20 and >40 mol/m2/day). Spatiotemporal variability in these environmental drivers co-occurred with differences in growth rates, suggesting that local conditions strongly influenced growth. In particular, temperature and nutrients were un-coupled seasonally in this region, with more variable responses in growth over the primary growing season (May to September). Overall, the sensitivity of the growth rates of this annual kelp to changing climatic conditions suggests that it is a useful bioindicator for management and marine planning efforts (e.g., restoration and aquaculture) across its species range and provides a feasible metric for monitoring.
Induction of the TEAD Coactivator VGLL1 by Estrogen Receptor–Targeted Therapy Drives Resistance in Breast Cancer
Authors: Gemma Carolina , Lai Chun-Fui , Singh Anup K. , Belfiore Antonino , Portman Neil , Milioli Heloisa Z. , Periyasamy Manikandan , Raafat Sara , Nicholls Alyssa J. , Davies Claire M. , Patel Naina R. , Simmons Georgia M. , Fan Hailing , Nguyen Van T.M. , Magnani Luca , Rakha Emad , Martin Lesley-Ann , Lim Elgene , Coombes R. Charles , Pruneri Giancarlo , Buluwela Laki , Ali Simak 
Published: October 2024

Abstract
Resistance to endocrine therapies (ET) is common in estrogen receptor (ER)–positive breast cancer, and most relapsed patients die with ET-resistant disease. Although genetic mutations provide explanations for some relapses, mechanisms of resistance remain undefined in many cases. Drug-induced epigenetic reprogramming has been shown to provide possible routes to resistance. By analyzing histone H3 lysine 27 acetylation profiles and transcriptional reprogramming in models of ET resistance, we discovered that selective ER degraders, such as fulvestrant, promote expression of vestigial-like 1 (VGLL1), a coactivator for TEF-1 and AbaA domain (TEAD) transcription factors. VGLL1, acting via TEADs, promoted the expression of genes that drive the growth of fulvestrant-resistant breast cancer cells. Pharmacological disruption of VGLL1–TEAD4 interaction inhibited VGLL1/TEAD-induced transcriptional programs to prevent the growth of resistant cells. EGFR was among the VGLL1/TEAD-regulated genes, and VGLL1-directed EGFR upregulation sensitized fulvestrant-resistant breast cancer cells to EGFR inhibitors. Taken together, these findings identify VGLL1 as a transcriptional driver in ET resistance and advance therapeutic possibilities for relapsed ER+ breast cancer patients.
Significance: Transcriptional reprogramming mediated by the upregulation of the TEAD coactivator VGLL1 confers resistance to estrogen receptor degraders in breast cancer but provides alternative therapeutic options for this clinically important patient group.
The Disconnect between Clinical Guidelines and Reality: The Case of Trastuzumab
Authors: Aranda-Gutierrez Alejandro , Soto-Perez-de-Celis Enrique 
Published: October 2024

AbstractHER2-positive breast cancer accounts for 10% to 20% of all breast cancer diagnoses. The mAb trastuzumab is crucial in treating this disease, significantly improving survival outcomes. Despite its inclusion in the World Health Organization’s Model List of Essential Medicines, access to trastuzumab remains limited worldwide. In this issue of the journal, Norris and colleagues report that only 45% of eligible patients with HER2-positive breast cancer in the United Kingdom received trastuzumab between 2012 and 2017. This finding in a high-income country with universal health care is worrisome and points toward even greater barriers to access in developing nations. Some solutions to improve accessibility, which we discuss, include shorter durations of trastuzumab treatment and encouraging the registration and availability of biosimilars. The data presented by Norris and colleagues point toward a disconnect between the academic oncology landscape, focused on expensive drugs with marginal benefits, and everyday practice in which even essential interventions may not be available. Ensuring the accessibility to proven, essential medicines should be as relevant as innovation to improve patient outcomes and create a more sustainable healthcare system.See related article by Norris et al., p. 1298
Adiposity throughout Adulthood and Risk of Young-Onset Breast Cancer Tumor Subtypes in the Young Women’s Health History Study
Authors: Marcus Post Lydia , Pathak Dorothy R. , Hamilton Ann S. , Hirko Kelly A. , Houang Richard T. , Guseman Emily H. , Sanfelippo Dan , Bohme Carnegie Nicole , Olson L. Karl , Rui Hallgeir , Schwartz Ann G. , Velie Ellen M. 
Published: October 2024

Abstract

Background:
The role of adult adiposity in young-onset breast cancer (YOBC) subtype risk is not well understood.

Methods:
In this population-based case (n = 1812)–control (n = 1,381) study of invasive YOBC (ages &lt;50 years), cases were identified from the Los Angeles County and Metropolitan Detroit Surveillance, Epidemiology, and End Results registries, 2010 to 2015. Area-based, frequency-matched controls were sampled from the 2010 Census. General adiposity [body mass index (BMI)] and central adiposity (waist circumference and waist-to-height ratio) across adulthood and covariates were collected from in-person interviews and measurements. ORs and 95% confidence intervals (CI) for adiposity and YOBC tumor subtypes [i.e., luminal A, luminal B, HER2+, and triple negative (TN)] were calculated, overall and by parity, using multivariable weighted logistic regression.

Results:
Obese young adult BMI was inversely associated with luminal A YOBC (OR = 0.35, 95% CI, 0.16–0.79); other subtype associations were nonsignificant. Similarly, adult overweight and obese BMIs were inversely associated with luminal A (OR = 0.66, 95% CI, 0.48–0.91 and OR = 0.59, 95% CI, 0.46–0.87, respectively), but not other subtypes. Conversely, larger waist circumference was associated with higher odds of luminal B and TN YOBC (OR = 1.48, 95% CI, 1.01–2.15 and OR = 2.48, 95% CI, 1.52–3.88, respectively), but not other subtypes (with similar results for weight-to-height ratio); highest odds were among parous women.

Conclusions:
Findings show greater general adult adiposity is associated with reduced odds of luminal A YOBC, whereas greater central adiposity is associated with increased odds of luminal B and TN YOBC, particularly among parous women.

Impact:
Additional studies of central adiposity and YOBC subtype risk, especially incorporating pregnancy history, are warranted.
Role of Dry Dynamics in the Maritime Continent Barrier Effect in the Madden–Julian Oscillation
Authors: Roundy Paul E. 
Published: October 2024

Abstract
Eastward-moving moist deep convection and atmospheric circulation signals associated with the tropical Madden–Julian oscillation (MJO) sometimes break down as they cross the Maritime Continent region, but other times, the signal propagates across the region maintaining amplitude or regaining it over the west Pacific basin. This paper assesses the hypothesis that upper-tropospheric zonal diffluence of the background wind over the Maritime Continent causes much of this Maritime Continent barrier effect and its variation over time, through two mechanisms: 1) by slowing down the MJO as stronger-than-average background upper-tropospheric zonal wind over the Indian Ocean advects the MJO circulation signal westward, slowing its eastward advance, and 2) through the zonal advection of the background wind by subseasonal zonal wind across a region of zonal diffluence of the background wind, which advects the background wind of the opposite sign to the MJO wind. Advection of the opposite-signed background wind counteracts the MJO wind and reduces its associated upper-tropospheric mass divergence, weakening the mechanisms of the upper-tropospheric Kelvin wave component of the MJO circulation. Composites of MJO-associated zonal wind and outgoing longwave radiation signals diminish as they cross the Maritime Continent region when the region’s background zonal winds are diffluent, and composites of data reconstructing the relevant advection terms reveal the direct action of the advection mechanisms.

Significance Statement
The Madden–Julian oscillation (MJO) is the leading subseasonal variation of the tropical atmosphere. This project addresses how diffluence of the upper-tropospheric background zonal wind can break down MJO events through advection of and by the background wind.
Platelet generation in vivo and in vitro
Authors: Furniss Jonathan A. , Tarassova Nathalie , Poole Alastair W. 
Published: October 2024

Abstract
Platelets play crucial roles in hemostasis, thrombosis, and immunity, but our understanding of their complex biogenesis (thrombopoiesis) is currently incomplete. Deeper insight into the mechanisms of platelet biogenesis inside and outside the body is fundamental for managing hematological disorders and for the development of novel cell-based therapies. In this article, we address the current understanding of in vivo thrombopoiesis, including mechanisms of platelet generation from megakaryocytes (proplatelet formation, cytoplasmic fragmentation, and membrane budding) and their physiological location. Progress has been made in replicating these processes in vitro for potential therapeutic application, notably in platelet transfusion and bioengineering of platelets for novel targeted therapies. The current platelet-generating systems and their limitations, particularly yield, scalability, and functionality, are discussed. Finally, we highlight the current controversies and challenges in the field that need to be addressed to achieve a full understanding of these processes, in vivo and in vitro.
Biogenic synthesis and characterization of antimicrobial, antioxidant, and antihemolytic zinc oxide nanoparticles from Desertifilum sp. TN-15 cell extract
Authors: Nadeem Taswar , Kaleem Muhammad , Minhas Lubna Anjum , Batool Saima , Sattar Muhammad Muzamil , Bashir Rifat , Mumtaz Abdul Samad 
Published: October 2024

AbstractCyanobacteria, being a prominent category of phototrophic organism, exhibit substantial potential as a valuable source of bioactive compounds and phytonutrients, including liposomes, amino derivatives, proteins, and carotenoids. In this investigation, a polyphasic approach was employed to isolate and characterize a newly discovered cyanobacterial strain from a rice field in the Garh Moor district of Jhang. Desertifilum sp. TN-15, a unique and less explored cyanobacterial strain, holds significant promise as a novel candidate for the synthesis of nanoparticles. This noticeable research gap underscores the novelty and untapped potential of Desertifilum sp. TN-15 in the field of nanomedicine. The characterization of the biogenically synthesized ZnO–NPs involved the application of diverse analytical techniques. Ultraviolet–visible spectroscopy revealed a surface plasmon resonance peak at 298 nm. Fourier transform infrared spectral analysis was utilized to confirm the involvement of biomolecules in the biogenic synthesis and stability. Scanning electron microscopy was employed to probe the surface morphology of the biogenic ZnO–NPs unveiling their size of 94.80 nm and star-shaped. Furthermore, X-ray diffraction analysis substantiated the crystalline nature of ZnO–NPs, with a crystalline size measuring 46 nm. To assess the physical stability of ZnO–NPs, zeta potential and dynamic light scattering measurements were conducted, yielding values of + 31.6 mV, and 94.80 nm, respectively, indicative of favorable stability. The antibacterial capabilities of Desertifilum sp. TN-15 are attributed to its abundance of bioactive components, including proteins, liposomes, amino derivatives, and carotenoids. Through the synthesis of zinc oxide nanoparticles (ZnO–NPs) with this strain, we have effectively used these chemicals to generate nanoparticles that exhibit noteworthy antibacterial activity against Staphylococcus aureus (MIC: 30.05 ± 0.003 µg/ml). Additionally, the ZnO–NPs displayed potent antifungal activity and antioxidant properties, as well as significant antihemolytic effects on red blood cells (IC50: 4.8 µg/ml). Cytotoxicity assessment using brine shrimps revealed an IC50 value of 3.1 µg/ml. The multifaceted actions of the biogenically synthesized ZnO–NPs underscore their potential applications in pharmacological and therapeutic fields. This study proposes a novel method for ZnO–NPs production utilizing the recently identified cyanobacterial strain Desertifilum sp. TN-15, highlighting the growing significance of biological systems in the environmentally friendly fabrication of metallic oxide nanomaterials.
Creatinine clearance/eGFR ratio: a simple index for muscle mass related to mortality in ICU patients
Authors: Volbeda Meint , Zijlstra Hendrik W. , Post Adrian , Kootstra-Ros Jenny E. , van der Voort Peter H. J. , Franssen Casper F. M. , Nijsten Maarten W. 
Published: October 2024

Abstract
Introduction
In patients admitted to the intensive care unit (ICU), muscle mass is inversely associated with mortality. Although muscle mass can be estimated with 24-h urinary creatinine excretion (UCE), its use for risk prediction in individual patients is limited because age-, sex-, weight- and length-specific reference values for UCE are lacking. The ratio between measured creatinine clearance (mCC) and estimated glomerular filtration rate (eGFR) might circumvent this constraint. The main goal was to assess the association of the mCC/eGFR ratio in ICU patients with all-cause hospital and long-term mortality.

Methods
The mCC/eGFR ratio was determined in patients admitted to our ICU between 2005 and 2021 with KDIGO acute kidney injury (AKI) stage 0–2 and an ICU stay ≥ 24 h. mCC was calculated from UCE and plasma creatinine and indexed to 1.73 m2. mCC/eGFR was analyzed by categorizing patients in mCC/eGFR quartiles and as continuous variable.

Results
Seven thousand five hundred nine patients (mean age 61 ± 15 years; 38% female) were included. In-hospital mortality was 27% in the lowest mCC/eGFR quartile compared to 11% in the highest quartile (P < 0.001). Five-year post-hospital discharge actuarial mortality was 37% in the lowest mCC/eGFR quartile compared to 19% in the highest quartile (P < 0.001). mCC/eGFR ratio as continuous variable was independently associated with in-hospital mortality in multivariable logistic regression (odds ratio: 0.578 (95% CI: 0.465—0.719); P < 0.001). mCC/eGFR ratio as continuous variable was also significantly associated with 5-year post-hospital discharge mortality in Cox regression (hazard ratio: 0.27 (95% CI: 0.22—0.32); P < 0.001).

Conclusions
The mCC/eGFR ratio is associated with both in-hospital and long-term mortality and may be an easily available index of muscle mass in ICU patients.
Avian malaria in a feral-pet pigeon: a case report
Authors: Muchaamba Gillian , Venugopal Kannan , Gächter Bettina , Vogler Barbara , Hetzel Udo , Albini Sarah , Marti Matthias 
Published: October 2024

Abstract
Background
Avian malaria is caused by diverse parasite species of the genus Plasmodium, and it affects various bird species. The occurrence of this disease in some wild bird species is sparsely documented due to the scarce availability of samples. Hence the pathogenicity in some hosts is not completely known. In addition, feral birds may act as reservoirs bridging the transmission cycle from wild migratory birds to domestic and zoo-kept bird species.

Case presentation
An owner of pigeons adopted a feral pigeon (Columba livia forma domestica) and housed it together with his other pet-pigeons. The bird died unexpectedly a few weeks after a surgical procedure and necropsy revealed a severely anaemic carcass, with pale organs and hydropericardium. Histopathologic analysis revealed inflammatory infiltrates in the lung and liver, and monocytes and Kupffer cells contained haemozoin pigment indicative of phagocytosis of Plasmodium-infected erythrocytes. A high erythrocytic infection rate of 18% was evident in tissues and blood vessels in various organs. Furthermore, the thyroid had masses classified as thyroid carcinomas. Immunohistochemistry with anti- Plasmodium falciparum HSP70 antibody revealed positive signals in erythrocytes and intravascular leucocytes. Further microscopy analysis using a Hemacolor-stained impression smear revealed a high parasitaemia with an asynchronous infection showing all erythrocytic stages. Molecular diagnosis by PCR identified Plasmodium relictum, lineage GRW11 as the aetiological agent. The bird presented died most likely due to an acute infection as evidenced by the high blood parasitaemia, leading to major erythrocyte destruction. Further analyses of feral pigeons (n = 22) did not reveal any additional cases of Plasmodium infections.

Conclusion
This study reports the first mortality associated with P. relictum lineage GRW11. The study supports previous studies, suggesting that Plasmodium infections are not frequent in pigeons. Host conditions like immunosuppression due to the tumour may have influenced the infection outcome in this fatal case. Use of anti-P. falciparum HSP70 antibody for detection of P. relictum antigens for immune assays in blood and tissue samples will be a useful tool for future studies.
Cholinesterase inhibitor use in amyloid PET-negative mild cognitive impairment and cognitive changes
Authors: Pyun Jung-Min , Park Young Ho , Kang Min Ju , Kim SangYun 
Published: October 2024

Abstract
Background
Cholinesterase inhibitors (ChEIs) are prescribed for Alzheimer’s disease (AD) and sometimes for mild cognitive impairment (MCI) without knowing underlying pathologies and its effect on cognition. We investigated the frequency of ChEI prescriptions in amyloid-negative MCI and their association with cognitive changes in the Alzheimer’s Disease Neuroimaging Initiative (ADNI) cohort.

Methods
We included participants with amyloid positron emission tomography (PET)-negative MCI from the ADNI. We analyzed the associations of ChEI use with cognitive changes, brain volume, and cerebrospinal fluid (CSF) total tau (t-tau), hyperphosphorylated tau181 (p-tau181), and p-tau181/t-tau ratio.

Results
ChEIs were prescribed in 27.4% of amyloid PET-negative MCI and were associated with faster cognitive decline, reduced baseline hippocampal volume and entorhinal cortical thickness, and a longitudinal decrease in the frontal lobe cortical thickness.

Conclusions
The association between ChEI use and accelerated cognitive decline may stem from underlying pathologies involving reduced hippocampal volume, entorhinal cortical thickness and faster frontal lobe atrophy. We suggest that ChEI use in amyloid PET-negative MCI patients might need further consideration, and studies investigating the causality between ChEI use and cognitive decline are warranted in the future.
Physiological provocation compared to acetazolamide in the assessment of cerebral hemodynamics: a case report
Authors: Henriksen Alexander Cuculiza , Thomsen Gerda Krog , Knudsen Gitte M. , Stavngaard Trine , Rosenbaum Sverre , Marner Lisbeth 
Published: October 2024

Abstract
Background
Severe large vessel disease may lead to cerebral hemodynamic failure that critically impairs cerebral blood flow (CBF) regulation elevating the risk of ischemic events. Assessment of the condition is often based on changes in CBF during vasodilatation; however, pharmacologically induced vasodilation does not reflect the physiological condition during an ischemic event caused by hemodynamic failure. We compared a [15O]H2O PET brain scan during vasodilation to a [99mTc]HMPAO SPECT brain scan during an ongoing transient ischemic attack (TIA).

Case presentation
A single patient presenting with limb-shaking TIA underwent CT, Digital Subtraction Angiography, and two different modalities of cerebral perfusion scans: [15O]H2O PET and [99mTc]HMPAO SPECT. Acetazolamide was used in the PET scan to induce vasodilatation, and during the SPECT scan physiological stress, standing up rapidly, was used to induce limb-shaking TIA. CT-angiography and Digital Subtraction Angiography revealed an occlusion in the distal part of the right A2 segment of the anterior cerebral artery, with a corresponding infarction in the watershed area. Collaterals supplied the main vascular territory of the anterior cerebral artery. During rest, neither perfusion modalities demonstrated reduced perfusion outside of the ischemic core. However, we found a pronounced difference between the PET utilizing acetazolamide and the SPECT during the TIA. The PET scan demonstrated relative hypoperfusion in vascular territory supplied by collaterals, while the area around the ischemic core was not affected. Contrary, the SPECT had only minor relative hypoperfusion in the collateral-supplied area, whereas the watershed area proximal to the infarct core had pronounced relative hypoperfusion.

Conclusions
The observed discrepancy in compromised areas during physiological provocation compared to pharmacological induced vasodilation questions the use of an unphysiological stressor for assessment of cerebrovascular hemodynamics. A physiological provocation test may achieve more clinically relevant evaluation.