bluuebunny/crossref_metadata_2025_split huggingface dataset:
DNA methylation is not involved in dietary restriction induced lifespan extension in adult Drosophila
Authors: LIAN TING , GAUR UMA , WU QI , TU JIANBO , SUN BOYUAN , YANG DEYING , FAN XIAOLAN , MAO XUEPING , YANG MINGYAO 
Published: February 2018

SummaryDietary restriction (DR) is widely regarded as a viable intervention to extend lifespan and healthspan in diverse organisms. The precise molecular regulatory mechanisms are largely unknown. Epigenetic modifications are not stable upon DR and also keep changing with age. Here, we employed whole genome bisulfite sequencing to determine the DNA methylation changes upon DR in adult Drosophila. Our results indicate that although a low level of DNA methylation exists in the adult Drosophila genome, there is no significant difference in DNA methylation levels upon DR when compared to unrestricted flies. This suggests that other epigenetic components such as histone modifications might be altered by DR.
DO BIOMARKERS VARY BY SOCIAL CLASS, EDUCATION AND REGION AND IS MIGRATION IMPORTANT? EVIDENCE FROM A COHORT OF BRITISH ADULTS
Authors: Krzyżanowska Monika , Mascie-Taylor C. G. Nicholas 
Published: February 2018

SummaryThe aim of this study was to test whether Body Mass Index (BMI), waist circumference, systolic and diastolic blood pressure, Forced Expiratory Volume (FEV1) and Peak Expiratory Flow (PEF) vary in relation to social class at birth and adulthood, educational level and region of residence, and also with inter-generational social, educational and regional mobility/migration. The study used 5702 adults (2894 males and 2718 females) from the longitudinal British National Child Development Study (all children born in England, Scotland and Wales during the first week in March 1958 with follow-up throughout childhood and adulthood, most recently at 55 years of age). In both sexes BMI and waist circumference tended to increase from social classes I+II to IV+V and higher social class was associated with higher mean FEV1 and PEF. Better-educated adults tended to have lower BMI and waist circumference, and higher mean FEV1 and PEF. Women from Wales had the highest mean BMI and waist circumference but the lowest mean PEF, while women in Scotland had the highest mean systolic blood pressure and the lowest mean FEV1. For men only, FEV1 and PEF showed regional variation and the lowest mean FEV1 was in Wales and the lowest PEF in Yorkshire & Humberside. Inter-generational social mobility was not found to be associated with any of the biomarkers, while educational mobility was related only to FEV1 and PEF. In both sexes, in unadjusted regression analysis regional migrant cohort members tended to have a lower mean BMI than sedentes. Regional male migrants also tended to have a lower waist circumference and a higher FEV1 and PEF than sedentes.
Parental perspectives on hand, foot, and mouth disease among children in Hong Kong: a longitudinal study
Authors: Liao Q. , Lam W. W. T. , Cowling B. J. , Fielding R. 
Published: February 2018

AbstractHand, foot, and mouth disease (HFMD), usually a self-limiting illness for young children, could cause a significant burden for parents because it can take up to 1–2 weeks for a sick child to recover. We conducted a two-wave longitudinal study over one summer peak season (May–July 2014) of HFMD to examine parents’ HFMD-related risk perceptions and protective responses. In total, 618 parents with at least one child aged ⩽12 years, recruited using randomly-dialled household telephone calls completed the baseline survey interview, 452 of whom subsequently completed the follow-up survey. Around two-thirds of participants perceived the chance of their child being infected by HFMD was ‘zero/very small/small’ but the likelihood of being hospitalized once infected was ‘somewhat likely/likely/very likely’. At follow-up, 82% reported washing child's hands frequently (Hygiene), 16% would keep their child away from school if HFMD cases were identified in school (Distancing) and 23% were ‘very likely/certainly’ to take the child for HFMD vaccination if available (Vaccination). Anticipated regret was consistently the strongest predictor for Hygiene (OR 3.34), and intention of Distancing (OR 2.58) and Vaccination (OR 3.16). Interventions focusing on anticipated regret may be effective to promote protective behaviour against HFMD among parents for their children.
The somal patterning of the AII amacrine cell mosaic in the mouse retina is indistinguishable from random simulations matched for density and constrained by soma size
Authors: KEELEY PATRICK W. , REESE BENJAMIN E. 
Published: February 2018

AbstractThe orderly spacing of retinal neurons is commonly regarded as a characteristic feature of retinal nerve cell populations. Exemplars of this property include the horizontal cells and the cholinergic amacrine cells, where individual cells minimize the proximity to like-type neighbors, yielding regularity in the patterning of their somata. Recently, two types of retinal bipolar cells in the mouse retina were shown to exhibit an order in their somal patterning no different from density-matched simulations constrained by soma size but being otherwise randomly distributed. The present study has now extended this finding to a type of retinal amacrine cell, the AII amacrine cell. Voronoi domain analysis revealed the patterning in the population of AII amacrine somata to be no different from density-matched and soma-size-constrained random simulations, while analysis of the density recovery profile showed AII amacrine cells to exhibit a minimal intercellular spacing identical to that for those random simulations: AII amacrine somata were positioned side-by-side as often as chance would predict. Regularity indexes and packing factors (PF) were far lower than those achieved by either the horizontal cells or cholinergic amacrine cells, with PFs also being comparable to those derived from the constrained random simulations. These results extend recent findings that call into question the widespread assumption that all types of retinal neurons are assembled as regular somal arrays, and have implications for the way in which AII amacrine cells must distribute their processes to ensure a uniform coverage of the retinal surface.
Effectiveness of mechanical weed control on Italian flint varieties of maize
Authors: Fogliatto Silvia , Milan Marco , De Palo Fernando , Ferrero Aldo , Vidotto Francesco 
Published: February 2018

AbstractWeed control is one of the most important practices for a satisfying crop performance. In organic farming, weeds are mainly controlled by using mechanical methods, which may result in incomplete crop selectivity. Maize is one of the crops for which mechanical weed control is commonly applied. To assess weed control efficacy and the possible crop injuries caused by mechanical interventions (harrowing, hoeing and ridging), a field experiment was carried out in 2013–2014 on traditional flint Italian varieties of maize (Marano, Ottofile, Pignoletto, Nostrano and the hybrid Maranello) suited for organic food production. The study included the following treatments: weed control with a spring tine harrow + hoeing and ridging (STH), manual weed removal all season long (MWR), spring tine harrowing + manual weed removal (STH + MWR) and an untreated check (CHK). In the 2 years, the experiment was carried out in two similar fields in which 60 plots (6 × 10 m) were arranged in a RCBD with three replications. Weed control efficacy was assessed by determining weed density, weed species composition and weed cover after each mechanical intervention in the STH and CHK plots. Weed diversity indices were also calculated at the final assessment. The possible crop injuries caused by mechanical means were assessed by determining maize plant height, number of leaves, and plant density after each mechanical intervention. At maturity, maize yield and other yield-related traits (1000-seed weight, hectolitre weight, and grain moisture) were determined. The results showed that the mechanical treatments lowered the weed infestation, without changing weed species dominance and slightly lowering species richness; even though they were not able to completely control the weeds. In both years, the final weed density in STH plots was of about 50 plants m−2. Better weed control was obtained when weeds were at early growth stages and with a repeated number of harrowing. Mechanical weeding did not cause significant injury in terms of plant height nor density; however, for Marano and Maranello, a delay in the crop cycle was observed as shown by the lower number of leaves in STH compared with MWR. Yield ranged from 0.3 t ha−1 for Marano CHK to 10.4 t ha−1 for the hybrid Maranello in MWR + STH. Yield and yield-related traits were not affected by mechanical weeding.
2,4-D–Resistant Buckhorn Plantain (Plantago lanceolata) in Managed Turf
Authors: Patton Aaron J. , Weisenberger Daniel V. , Schortgen Geoff P. 
Published: February 2018

AbstractA population of buckhorn plantain with suspected resistance to 2,4-D was identified in central Indiana following 30 yr of 2,4-D–containing herbicide applications. Our objectives were to (1) confirm and quantify the level of herbicide resistance in the buckhorn plantain population using dose–response experiments and (2) find alternative herbicides that could be used to control this population. Greenhouse experiments were conducted to quantify the dose–response of resistant (R) and susceptible (S) biotypes of buckhorn plantain to both 2,4-D and triclopyr, two synthetic auxin herbicides from different chemical families. The R biotype was ≥6.2 times less sensitive to 2,4-D than the S biotype. The efficacy of triclopyr was similar on both the R and S biotypes of buckhorn plantain, suggesting the absence of cross-resistance to this herbicide. This is the first report of 2,4-D resistance in buckhorn plantain and the first report of 2,4-D resistance in turf. The resistance mechanism was limited to within a chemical family (phenoxycarboxylic acid) and did not occur across all WSSA Group 4 synthetic auxin herbicides, as the pyridinecarboxylic acid herbicides clopyralid and triclopyr and the arylpicolinate herbicide halauxifen-methyl provided control in our experiments.
Life on N2O: deciphering the ecophysiology of N2O respiring bacterial communities in a continuous culture
Authors: Conthe Monica , Wittorf Lea , Kuenen J Gijs , Kleerebezem Robbert , van Loosdrecht Mark C M , Hallin Sara 
Published: February 2018

Abstract
Reduction of the greenhouse gas N2O to N2 is a trait among denitrifying and non-denitrifying microorganisms having an N2O reductase, encoded by nosZ. The nosZ phylogeny has two major clades, I and II, and physiological differences among organisms within the clades may affect N2O emissions from ecosystems. To increase our understanding of the ecophysiology of N2O reducers, we determined the thermodynamic growth efficiency of N2O reduction and the selection of N2O reducers under N2O- or acetate-limiting conditions in a continuous culture enriched from a natural community with N2O as electron acceptor and acetate as electron donor. The biomass yields were higher during N2O limitation, irrespective of dilution rate and community composition. The former was corroborated in a continuous culture of Pseudomonas stutzeri and was potentially due to cytotoxic effects of surplus N2O. Denitrifiers were favored over non-denitrifying N2O reducers under all conditions and Proteobacteria harboring clade I nosZ dominated. The abundance of nosZ clade II increased when allowing for lower growth rates, but bacteria with nosZ clade I had a higher affinity for N2O, as defined by μmax/Ks. Thus, the specific growth rate is likely a key factor determining the composition of communities living on N2O respiration under growth-limited conditions.
Whole-exome sequencing and gene-based rare variant association tests suggest that PLA2G4E might be a risk gene for panic disorder
Authors: Morimoto Yoshiro , Shimada-Sugimoto Mihoko , Otowa Takeshi , Yoshida Shintaro , Kinoshita Akira , Mishima Hiroyuki , Yamaguchi Naohiro , Mori Takatoshi , Imamura Akira , Ozawa Hiroki , Kurotaki Naohiro , Ziegler Christiane , Domschke Katharina , Deckert Jürgen , Umekage Tadashi , Tochigi Mamoru , Kaiya Hisanobu , Okazaki Yuji , Tokunaga Katsushi , Sasaki Tsukasa , Yoshiura Koh-ichiro , Ono Shinji 
Published: February 2018

AbstractPanic disorder (PD) is characterized by recurrent and unexpected panic attacks, subsequent anticipatory anxiety, and phobic avoidance. Recent epidemiological and genetic studies have revealed that genetic factors contribute to the pathogenesis of PD. We performed whole-exome sequencing on one Japanese family, including multiple patients with panic disorder, which identified seven rare protein-altering variants. We then screened these genes in a Japanese PD case–control group (384 sporadic PD patients and 571 controls), resulting in the detection of three novel single nucleotide variants as potential candidates for PD (chr15: 42631993, T>C in GANC; chr15: 42342861, G>T in PLA2G4E; chr20: 3641457, G>C in GFRA4). Statistical analyses of these three genes showed that PLA2G4E yielded the lowest p value in gene-based rare variant association tests by Efficient and Parallelizable Association Container Toolbox algorithms; however, the p value did not reach the significance threshold in the Japanese. Likewise, in a German case–control study (96 sporadic PD patients and 96 controls), PLA2G4E showed the lowest p value but again did not reach the significance threshold. In conclusion, we failed to find any significant variants or genes responsible for the development of PD. Nonetheless, our results still leave open the possibility that rare protein-altering variants in PLA2G4E contribute to the risk of PD, considering the function of this gene.
Visualizing heavy fermion confinement and Pauli-limited superconductivity in layered CeCoIn5
Authors: Gyenis András , Feldman Benjamin E. , Randeria Mallika T. , Peterson Gabriel A. , Bauer Eric D. , Aynajian Pegor , Yazdani Ali 
Published: February 2018

AbstractLayered material structures play a key role in enhancing electron–electron interactions to create correlated metallic phases that can transform into unconventional superconducting states. The quasi-two-dimensional electronic properties of such compounds are often inferred indirectly through examination of bulk properties. Here we use scanning tunneling microscopy to directly probe in cross-section the quasi-two-dimensional electronic states of the heavy fermion superconductor CeCoIn5. Our measurements reveal the strong confined nature of quasiparticles, anisotropy of tunneling characteristics, and layer-by-layer modulated behavior of the precursor pseudogap gap phase. In the interlayer coupled superconducting state, the orientation of line defects relative to the d-wave order parameter determines whether in-gap states form due to scattering. Spectroscopic imaging of the anisotropic magnetic vortex cores directly characterizes the short interlayer superconducting coherence length and shows an electronic phase separation near the upper critical in-plane magnetic field, consistent with a Pauli-limited first-order phase transition into a pseudogap phase.
Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair
Authors: Lu Wei-Ting , Hawley Ben R. , Skalka George L. , Baldock Robert A. , Smith Ewan M. , Bader Aldo S. , Malewicz Michal , Watts Felicity Z. , Wilczynska Ania , Bushell Martin 
Published: February 2018

AbstractThe error-free and efficient repair of DNA double-stranded breaks (DSBs) is extremely important for cell survival. RNA has been implicated in the resolution of DNA damage but the mechanism remains poorly understood. Here, we show that miRNA biogenesis enzymes, Drosha and Dicer, control the recruitment of repair factors from multiple pathways to sites of damage. Depletion of Drosha significantly reduces DNA repair by both homologous recombination (HR) and non-homologous end joining (NHEJ). Drosha is required within minutes of break induction, suggesting a central and early role for RNA processing in DNA repair. Sequencing of DNA:RNA hybrids reveals RNA invasion around DNA break sites in a Drosha-dependent manner. Removal of the RNA component of these structures results in impaired repair. These results show how RNA can be a direct and critical mediator of DNA damage repair in human cells.
Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations
Authors: Cohen Sarah , Puget Nadine , Lin Yea-Lih , Clouaire Thomas , Aguirrebengoa Marion , Rocher Vincent , Pasero Philippe , Canitrot Yvan , Legube Gaëlle 
Published: February 2018

AbstractAtaxia with oculomotor apraxia 2 (AOA-2) and amyotrophic lateral sclerosis (ALS4) are neurological disorders caused by mutations in the gene encoding for senataxin (SETX), a putative RNA:DNA helicase involved in transcription and in the maintenance of genome integrity. Here, using ChIP followed by high throughput sequencing (ChIP-seq), we report that senataxin is recruited at DNA double-strand breaks (DSBs) when they occur in transcriptionally active loci. Genome-wide mapping unveiled that RNA:DNA hybrids accumulate on DSB-flanking chromatin but display a narrow, DSB-induced, depletion near DNA ends coinciding with senataxin binding. Although neither required for resection nor for timely repair of DSBs, senataxin was found to promote Rad51 recruitment, to minimize illegitimate rejoining of distant DNA ends and to sustain cell viability following DSB production in active genes. Our data suggest that senataxin functions at DSBs in order to limit translocations and ensure cell viability, providing new insights on AOA2/ALS4 neuropathies.
Divergent roles for antigenic drive in the aetiology of primary versus dasatinib-associated CD8+ TCR-Vβ+ expansions
Authors: Lissina Anna , McLaren James E. , Ilander Mette , Andersson Emma I. , Lewis Catherine S. , Clement Mathew , Herman Andrew , Ladell Kristin , Llewellyn-Lacey Sian , Miners Kelly L. , Gostick Emma , Melenhorst J. Joseph , Barrett A. John , Price David A. , Mustjoki Satu , Wooldridge Linda 
Published: February 2018

AbstractCD8+ T-cell expansions are the primary manifestation of T-cell large granular lymphocytic leukemia (T-LGLL), which is frequently accompanied by neutropenia and rheumatoid arthritis, and also occur as a secondary phenomenon in leukemia patients treated with dasatinib, notably in association with various drug-induced side-effects. However, the mechanisms that underlie the genesis and maintenance of expanded CD8+ T-cell receptor (TCR)-Vβ+ populations in these patient groups have yet to be fully defined. In this study, we performed a comprehensive phenotypic and clonotypic assessment of expanded (TCR-Vβ+) and residual (TCR-Vβ−) CD8+ T-cell populations in T-LGLL and dasatinib-treated chronic myelogenous leukemia (CML) patients. The dominant CD8+ TCR-Vβ+ expansions in T-LGLL patients were largely monoclonal and highly differentiated, whereas the dominant CD8+ TCR-Vβ+ expansions in dasatinib-treated CML patients were oligoclonal or polyclonal, and displayed a broad range of memory phenotypes. These contrasting features suggest divergent roles for antigenic drive in the immunopathogenesis of primary versus dasatinib-associated CD8+ TCR-Vβ+ expansions.
Effects of Echo Time on IVIM Quantification of the Normal Prostate
Authors: Feng Zhaoyan , Min Xiangde , Wang Liang , Yan Xu , Li Basen , Ke Zan , Zhang Peipei , You Huijuan 
Published: February 2018

AbstractThe two-compartment intravoxel incoherent motion (IVIM) theory assumes that the transverse relaxation time is the same in both compartments. However, blood and tissue have different T2 values, and echo time (TE) may thus have an effect on the quantitative parameters of IVIM. The purpose of this study was to investigate the effects of TE on IVIM-DWI-derived parameters of the prostate. In total, 17 healthy volunteers underwent two repeat examinations. IVIM-DWI data were scanned 6 times with variable TE values of 60, 70, 80, 90, 100, and 120 ms. The ADC of a mono-exponential model and the D, D*, and f parameters of the IVIM model were calculated separately for each TE. Repeat measures were assessed by calculating the coefficient of variation and Bland-Altman limits of agreement for each parameter. Spearman’s rho test was used to analyse relationships between IVIM indices and TE. Our results showed that TE had an effect on IVIM quantification, which should be kept constant in the examination protocol at each individual institution. Alternatively, an extended IVIM could be used to eliminate the effect of the TE value on the quantitative parameters of IVIM. This may be helpful for guiding clinical research, especially for longitudinal studies.
Judging the position of the artificial hand induces a “visual” drift towards the real one during the rubber hand illusion
Authors: Erro Roberto , Marotta Angela , Tinazzi Michele , Frera Elena , Fiorio Mirta 
Published: February 2018

AbstractWhen subjects look at a rubber hand being brush-stroked synchronously with their own hidden hand, they might feel a sense of ownership over the rubber hand. The perceived mislocalization of the own hand towards the rubber hand (proprioceptive drift) would reflect an implicit marker of this illusion occurring through the dominance of vision over proprioception. This account, however, contrasts with principles of multisensory integration whereby percepts result from a “statistical sum” of different sensory afferents. In this case, the most-known proprioceptive drift should be mirrored by complementary visual drift of the rubber hand in the opposite direction. We investigated this issue by designing two experiments in which subjects were not only requested to localize their own hand but also the rubber hand and further explored the subjective feeling of the illusion. In both experiments, we demonstrated a (visual) drift in the opposite direction of the proprioceptive drift, suggesting that both hands converge toward each other. This might suggest that the spatial representations of the two hands are integrated in a common percept placed in between them, contradicting previous accounts of substitution of the real hand by the rubber hand.
Protective effect of Group B Streptococcus type-III polysaccharide conjugates against maternal colonization, ascending infection and neonatal transmission in rodent models
Authors: Chiarot Emiliano , Spagnuolo Angela , Maccari Silvia , Naimo Eleonora , Acquaviva Alessandra , Cecchi Raffaella , Galletti Bruno , Fabbrini Monica , Mori Elena , Ruggiero Paolo , Grandi Guido , Fontana Maria Rita , Bensi Giuliano , Margarit Immaculada 
Published: February 2018

AbstractGroup B Streptococcus (GBS) is a normal inhabitant of recto-vaginal mucosae in up to 30% of healthy women. Colonization is a major risk factor for perinatal infection which can lead to severe complications such as stillbirth and neonatal invasive disease. Intra-partum antibiotic prophylaxis in colonized women is a safe and cost-effective preventive measure against early-onset disease in the first days of life, but has no effect on late-onset manifestations or on early maternal infection. Maternal immunization with capsular polysaccharide-based vaccines shows promise for the prevention of both early-onset and late-onset neonatal infections, although ability to prevent maternal colonization and ascending infection has been less studied. Here we investigated the effect of a GBS glycoconjugate vaccine since the very early stage of maternal GBS acquisition to neonatal outcome by rodent models of vaginal colonization and ascending infection. Immunization of female mice and rats with a type III glycoconjugate reduced vaginal colonization, infection of chorioamniotic/ placental membranes and bacterial transmission to fetuses and pups. Type III specific antibodies were detected in the blood and vagina of vaccinated mothers and their offspring. The obtained data support a potential preventive effect of GBS glycoconjugate vaccines during the different stages of pregnancy.