bluuebunny/crossref_metadata_2025_split huggingface dataset:
Nanoimaging granule dynamics and subcellular structures in activated mast cells using soft X-ray tomography
Authors: Chen Huan-Yuan , Chiang Dapi Meng-Lin , Lin Zi-Jing , Hsieh Chia-Chun , Yin Gung-Chian , Weng I.-Chun , Guttmann Peter , Werner Stephan , Henzler Katja , Schneider Gerd , Lai Lee-Jene , Liu Fu-Tong 
Published: October 2016

AbstractMast cells play an important role in allergic responses. During activation, these cells undergo degranulation, a process by which various kinds of mediators stored in the granules are released. Granule homeostasis in mast cells has mainly been studied by electron microscopy (EM), where the fine structures of subcellular organelles are partially destroyed during sample preparation. Migration and fusion of granules have not been studied in detail in three dimensions (3D) in unmodified samples. Here, we utilized soft X-ray tomography (SXT) coupled with fluorescence microscopy to study the detailed structures of organelles during mast cell activation. We observed granule fission, granule fusion to plasma membranes, and small vesicles budding from granules. We also detected lipid droplets, which became larger and more numerous as mast cells were activated. We observed dramatic morphological changes of mitochondria in activated mast cells and 3D-reconstruction revealed the highly folded cristae inner membrane, features of functionally active mitochondria. We also observed giant vesicles containing granules, mitochondria, and lipid droplets, which we designated as granule-containing vesicles (GCVs) and verified their presence by EM in samples prepared by cryo-substitution, albeit with a less clear morphology. Thus, our studies using SXT provide significant insights into mast cell activation at the organelle level.
Formation of xenon-nitrogen compounds at high pressure
Authors: Howie Ross T. , Turnbull Robin , Binns Jack , Frost Mungo , Dalladay-Simpson Philip , Gregoryanz Eugene 
Published: October 2016

AbstractMolecular nitrogen exhibits one of the strongest known interatomic bonds, while xenon possesses a closed-shell electronic structure: a direct consequence of which renders both chemically unreactive. Through a series of optical spectroscopy and x-ray diffraction experiments, we demonstrate the formation of a novel van der Waals compound formed from binary Xe-N2 mixtures at pressures as low as 5 GPa. At 300 K and 5 GPa Xe(N2)2-I is synthesised, and if further compressed, undergoes a transition to a tetragonal Xe(N2)2-II phase at 14 GPa; this phase appears to be unexpectedly stable at least up to 180 GPa even after heating to above 2000 K. Raman spectroscopy measurements indicate a distinct weakening of the intramolecular bond of the nitrogen molecule above 60 GPa, while transmission measurements in the visible and mid-infrared regime suggest the metallisation of the compound at ~100 GPa.
Fabricating customized hydrogel contact lens
Authors: Childs Andre , Li Hao , Lewittes Daniella M. , Dong Biqin , Liu Wenzhong , Shu Xiao , Sun Cheng , Zhang Hao F. 
Published: October 2016

AbstractContact lenses are increasingly used in laboratories for in vivo animal retinal imaging and pre-clinical studies. The lens shapes often need modification to optimally fit corneas of individual test subjects. However, the choices from commercially available contact lenses are rather limited. Here, we report a flexible method to fabricate customized hydrogel contact lenses. We showed that the fabricated hydrogel is highly transparent, with refractive indices ranging from 1.42 to 1.45 in the spectra range from 400 nm to 800 nm. The Young’s modulus (1.47 MPa) and hydrophobicity (with a sessile drop contact angle of 40.5°) have also been characterized experimentally. Retinal imaging using optical coherence tomography in rats wearing our customized contact lenses has the quality comparable to the control case without the contact lens. Our method could significantly reduce the cost and the lead time for fabricating soft contact lenses with customized shapes, and benefit the laboratorial-used contact lenses in pre-clinical studies.
Vectorization of biomacromolecules into cells using extracellular vesicles with enhanced internalization induced by macropinocytosis
Authors: Nakase Ikuhiko , Noguchi Kosuke , Fujii Ikuo , Futaki Shiroh 
Published: October 2016

AbstractExtracellular vesicles (EVs, exosomes) are approximately 30- to 200-nm-long vesicles that have received increased attention due to their role in cell-to-cell communication. Although EVs are highly anticipated to be a next-generation intracellular delivery tool because of their pharmaceutical advantages, including non-immunogenicity, their cellular uptake efficacy is low because of the repulsion of EVs and negatively charged cell membranes and size limitations in endocytosis. Here, we demonstrate a methodology for achieving enhanced cellular EV uptake using arginine-rich cell-penetrating peptides (CPPs) to induce active macropinocytosis. The induction of macropinocytosis via a simple modification to the exosomal membrane using stearylated octaarginine, which is a representative CPP, significantly enhanced the cellular EV uptake efficacy. Consequently, effective EV-based intracellular delivery of an artificially encapsulated ribosome-inactivating protein, saporin, in EVs was attained.
Light-Induced Peroxide Formation in ZnO: Origin of Persistent Photoconductivity
Authors: Kang Youngho , Nahm Ho-Hyun , Han Seungwu 
Published: October 2016

AbstractThe persistent photoconductivity (PPC) in ZnO has been a critical problem in opto-electrical devices employing ZnO such as ultraviolet sensors and thin film transistors for the transparent display. While the metastable state of oxygen vacancy (VO) is widely accepted as the microscopic origin of PPC, recent experiments on the influence of temperature and oxygen environments are at variance with the VO model. In this study, using the density-functional theory calculations, we propose a novel mechanism of PPC that involves the hydrogen-zinc vacancy defect complex (2H-VZn). We show that a substantial amount of 2H-VZn can exist during the growth process due to its low formation energy. The light absorption of 2H-VZn leads to the metastable state that is characterized by the formation of "Equation missing" (peroxide) around the defect, leaving the free carriers in the conduction band. Furthermore, we estimate the lifetime of photo-electrons to be ~20 secs, which is similar to the experimental observation. Our model also explains the experimental results showing that PPC is enhanced (suppressed) in oxygen-rich (low-temperature) conditions. By revealing a convincing origin of PPC in ZnO, we expect that the present work will pave the way for optimizing optoelectronic properties of ZnO.
MicroRNA-127 targeting of mitoNEET inhibits neurite outgrowth, induces cell apoptosis and contributes to physiological dysfunction after spinal cord transection
Authors: He Qin-Qin , Xiong Liu-Lin , Liu Fei , He Xiang , Feng Guo-Ying , Shang Fei-Fei , Xia Qing-Jie , Wang You-Cui , Qiu De-Lu , Luo Chao-Zhi , Liu Jia , Wang Ting-Hua 
Published: October 2016

AbstractNeuroregeneration and apoptosis are two important pathophysiologic changes after spinal cord injury (SCI), but their underlying mechanisms remain unclear. MicroRNAs (miRNAs) play a crucial role in the regulation of neuroregeneration and neuronal apoptosis, research areas that have been greatly expanded in recent years. Here, using miRNA arrays to profile miRNA transcriptomes, we demonstrated that miR-127-3p was significantly down-regulated after spinal cord transection (SCT). Then, bioinformatics analyses and experimental detection showed that miR-127-3p exhibited specific effects on the regulation of neurite outgrowth and the induction of neuronal apoptosis by regulating the expression of the mitochondrial membrane protein mitoNEET. Moreover, knockdown of MitoNEET leaded to neuronal loss and apoptosis in primary cultured spinal neurons. This study therefore revealed that miR-127-3p, which targets mitoNEET, plays a vital role in regulating neurite outgrowth and neuronal apoptosis after SCT. Thus, modificatioin of the mitoNEET expression, such as mitoNEET activition may provide a new strategy for the treatment of SCI in preclinical trials.
Controllable Synthesis of Monodisperse Er3+-Doped Lanthanide Oxyfluorides Nanocrystals with Intense Mid-Infrared Emission
Authors: He Huilin , Liu Qiang , Yang Dandan , Pan Qiwen , Qiu Jianrong , Dong Guoping 
Published: October 2016

AbstractMonodisperse lanthanide oxyfluorides LnOF (Ln = Gd, Y) with mid-infrared emissions were controllably synthesized via a mild co-precipitation route and a subsequent heat-treatment. The detailed composition and morphology were characterized by X-ray diffraction (XRD), scanning electron microscope (SEM) and high resolution transmission electron microscopy (HRTEM). The results showed that monodisperse GdOF:Er3+ were nano-riced shape with length about 350 nm and width about 120 nm, while the quasi-spherical YOF:Er3+ were uniform nanocrystals with an average size around 100 nm. The influence of calcination temperature on the size and phase transition of LnOF nanocrystals was also investigated. The photoluminescence (PL) spectra indicated that the 2.7 μm emission of Er3+ had achieved in both GdOF and YOF nanocrystals, which were calcined at different temperatures. In addition, the decay time of both 4I13/2 and 4I13/2 energy levels corresponding to Er3+ in YOF nanocrystals were also studied in detail. The results suggested that both rice-shaped GdOF nanocrystals and YOF nanocrystals could provide suitable candidate materials for nanocrystals-glass composites, which could be a step forward to the realization of mid-infrared laser materials.
Nitroheterocyclic drugs cure experimental Trypanosoma cruzi infections more effectively in the chronic stage than in the acute stage
Authors: Francisco Amanda Fortes , Jayawardhana Shiromani , Lewis Michael D. , White Karen L. , Shackleford David M. , Chen Gong , Saunders Jessica , Osuna-Cabello Maria , Read Kevin D. , Charman Susan A. , Chatelain Eric , Kelly John M. 
Published: October 2016

AbstractThe insect-transmitted protozoan parasite Trypanosoma cruzi is the causative agent of Chagas disease, and infects 5–8 million people in Latin America. Chagas disease is characterised by an acute phase, which is partially resolved by the immune system, but then develops as a chronic life-long infection. There is a consensus that the front-line drugs benznidazole and nifurtimox are more effective against the acute stage in both clinical and experimental settings. However, confirmative studies have been restricted by difficulties in demonstrating sterile parasitological cure. Here, we describe a systematic study of nitroheterocyclic drug efficacy using highly sensitive bioluminescence imaging of murine infections. Unexpectedly, we find both drugs are more effective at curing chronic infections, judged by treatment duration and therapeutic dose. This was not associated with factors that differentially influence plasma drug concentrations in the two disease stages. We also observed that fexinidazole and fexinidazole sulfone are more effective than benznidazole and nifurtimox as curative treatments, particularly for acute stage infections, most likely as a result of the higher and more prolonged exposure of the sulfone derivative. If these findings are translatable to human patients, they will have important implications for treatment strategies.
Transient chaos - a resolution of breakdown of quantum-classical correspondence in optomechanics
Authors: Wang Guanglei , Lai Ying-Cheng , Grebogi Celso 
Published: October 2016

AbstractRecently, the phenomenon of quantum-classical correspondence breakdown was uncovered in optomechanics, where in the classical regime the system exhibits chaos but in the corresponding quantum regime the motion is regular - there appears to be no signature of classical chaos whatsoever in the corresponding quantum system, generating a paradox. We find that transient chaos, besides being a physically meaningful phenomenon by itself, provides a resolution. Using the method of quantum state diffusion to simulate the system dynamics subject to continuous homodyne detection, we uncover transient chaos associated with quantum trajectories. The transient behavior is consistent with chaos in the classical limit, while the long term evolution of the quantum system is regular. Transient chaos thus serves as a bridge for the quantum-classical transition (QCT). Strikingly, as the system transitions from the quantum to the classical regime, the average chaotic transient lifetime increases dramatically (faster than the Ehrenfest time characterizing the QCT for isolated quantum systems). We develop a physical theory to explain the scaling law.
Controllable vacuum-induced diffraction of matter-wave superradiance using an all-optical dispersive cavity
Authors: Su Shih-Wei , Lu Zhen-Kai , Gou Shih-Chuan , Liao Wen-Te 
Published: October 2016

AbstractCavity quantum electrodynamics (CQED) has played a central role in demonstrating the fundamental principles of the quantum world, and in particular those of atom-light interactions. Developing fast, dynamical and non-mechanical control over a CQED system is particularly desirable for controlling atomic dynamics and building future quantum networks at high speed. However conventional mirrors do not allow for such flexible and fast controls over their coupling to intracavity atoms mediated by photons. Here we theoretically investigate a novel all-optical CQED system composed of a binary Bose-Einstein condensate (BEC) sandwiched by two atomic ensembles. The highly tunable atomic dispersion of the CQED system enables the medium to act as a versatile, all-optically controlled atomic mirror that can be employed to manipulate the vacuum-induced diffraction of matter-wave superradiance. Our study illustrates a innovative all-optical element of atomtroics and sheds new light on controlling light-matter interactions.
Evaluation of Novel Targeted Therapies in Aggressive Biology Sarcoma Patients after progression from US FDA approved Therapies
Authors: Subbiah Vivek , Hess Kenneth R. , Khawaja Muhammad Rizwan , Wagner Michael J. , Tang Chad , Naing Aung , Fu Siqing , Janku Filip , Piha-Paul Sarina , Tsimberidou Apostolia M. , Herzog Cynthia E. , Ludwig Joseph A. , Patel Shreyaskumar , Ravi Vinod , Benjamin Robert S. , Meric-Bernstam Funda , Hong David S. 
Published: October 2016

AbstractPrognosis of patients with advanced sarcoma after progression from FDA approved therapies remains grim. In this study, clinical outcomes of 100 patients with advanced sarcoma who received treatment on novel targeted therapy trials were evaluated. Outcomes of interest included best response, clinical benefit rate, progression-free survival (PFS) and overall survival (OS). Median patient age was 48 years (range 14–80). Patients had received a median of 2 prior lines of systemic treatment. Phase I treatments were anti-VEGF–based (n = 45), mTOR inhibitor–based (n = 15), and anti-VEGF + mTOR inhibitor–based (n = 17) or involved other targets (n = 23). Best responses included partial response (n = 4) and stable disease (n = 57). Clinical benefit rate was 36% (95% confidence interval 27–46%). Median OS was 9.6 months (95% Confidence Interval 8.1–14.2); median PFS was 3.5 months (95% Confidence Interval 2.4–4.7). RMH prognostic score of 2 or 3 was associated with lower median OS (log-rank p-value < 0.0001) and PFS (log-rank p-value 0.0081). Receiving cytotoxic chemotherapy as part of phase I trial was also associated with shorter median OS (log-rank p-value 0.039). Patients with advanced sarcoma treated on phase I clinical trials had a clinical benefit rate of 36% and RMH score predicted survival.
Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis
Authors: Casas Laura , Saborido-Rey Fran , Ryu Taewoo , Michell Craig , Ravasi Timothy , Irigoien Xabier 
Published: October 2016

AbstractSequential hermaphroditism is a unique reproductive strategy among teleosts that is displayed mainly in fish species living in the coral reef environment. The reproductive biology of hermaphrodites has long been intriguing; however, very little is known about the molecular pathways underlying their sex change. Here, we provide the first de novo transcriptome analyses of a hermaphrodite teleost´s undergoing sex change in its natural environment. Our study has examined relative gene expression across multiple groups—rather than just two contrasting conditions— and has allowed us to explore the differential expression patterns throughout the whole process. Our analysis has highlighted the rapid and complex genomic response of the brain associated with sex change, which is subsequently transmitted to the gonads, identifying a large number of candidate genes, some well-known and some novel, involved in the process. The present study provides strong evidence of the importance of the sex steroidogenic machinery during sex change in clownfish, with the aromatase gene playing a central role, both in the brain and the gonad. This work constitutes the first genome-wide study in a social sex-changing species and provides insights into the genetic mechanism governing social sex change and gonadal restructuring in protandrous hermaphrodites.
Risk burdens of modifiable risk factors incorporating lipoprotein (a) and low serum albumin concentrations for first incident acute myocardial infarction
Authors: Yang Qin , He Yong-Ming , Cai Dong-Ping , Yang Xiang-Jun , Xu Hai-Feng 
Published: October 2016

AbstractRisk burdens of modifiable risk factors incorporating lipoprotein (a) (Lp(a)) and low serum albumin (LSA) concentrations for first incident acute myocardial infarction (AMI) haven’t been studied previously. Cross-sectional study of 1552 cases and 6125 controls was performed for identifying the association of risk factors with first incident AMI and their corresponding population attributable risks (PARs). Modifiable risk factors incorporating LSA and Lp(a) accounted for up to 92% of PAR for first incident AMI. Effects of these risk factors were different in different sexes across different age categories. Overall, smoking and LSA were the 2 strongest risk factors, together accounting for 64% of PAR for first incident AMI. After multivariable adjustment, Lp(a) and LSA accounted for 19% and 41%, respectively, and together for more than a half (54%) of PAR for first incident AMI. Modifiable risk factors incorporating LSA and Lp(a) have accounted for an overwhelmingly large proportion of the risk of first incident AMI, indicating most first incident AMI is preventable. The knowledge of risk burdens for first incident AMI incorporating Lp (a) and LSA may be beneficial for further reducing first incident AMI from a new angle.
Slip-Effect Functional Air Filter for Efficient Purification of PM2.5
Authors: Zhao Xinglei , Wang Shan , Yin Xia , Yu Jianyong , Ding Bin 
Published: October 2016

AbstractFabrication of air filtration materials (AFM) that allow air to easily flow through while retaining particles is a significant and urgent need due to the harmful airborne particulate matter pollution; however, this is still a challenging research area. Herein, we report novel slip-effect functional nanofibrous membranes with decreased air resistance (reduction rate of 40%) due to the slip flow of air molecules on the periphery of nanofibers. This was achieved through careful control over the diameters of electrospun polyacrylonitrile fibers and aperture size of fiber assembly. Fiber assembly with 86% of fiber diameters between 60–100 nm was found to be most effective for slip flow, as these diameters are close to the mean free path of air molecules (65.3 nm). Significantly, an equilibrium factor τ = df/d2 has been introduced to elucidate the effect of distance of adjacent fibers on the drag force of airflow. Furthermore, the most effective aperture size (>3.5 μm) for slip-effect has been determined. Ultimately, the new material displayed low air resistance of 29.5 Pa, high purification efficiency of 99.09%, good transmittance of 77%, and long service life. The successful fabrication of such materials can facilitate the development of high-performance AFMs for various applications.
MicroRNA-16 inhibits feto-maternal angiogenesis and causes recurrent spontaneous abortion by targeting vascular endothelial growth factor
Authors: Zhu Yongsheng , Lu Hong , Huo Zhenghao , Ma Zhanbin , Dang Jie , Dang Wei , Pan Lin , Chen Jing , Zhong Huijun 
Published: October 2016

AbstractRecurrent spontaneous abortion (RSA) is a common health problem that affects women of reproductive age. Recent studies have indicated that microRNAs are important factors in miscarriage. This study investigated the role of miR-16 in regulating vascular endothelial growth factor (VEGF) expression and the pathogenesis of RSA. In this report, clinical samples revealed that miR-16 expression was significantly elevated in the villi and decidua of RSA patients. In vitro, miR-16 upregulation inhibited human umbilical vein endothelial cell proliferation, migration and tube formation. Conversely, the downregulation of miR-16 reversed these effects. In vivo, we demonstrated that abnormal miR-16 levels affect the weights of the placenta and embryo and the number of progeny and microvascular density, as well as cause recurrent abortions by controlling VEGF expression in pregnant mice. VEGF, a potential target gene of miR-16, was inversely correlated with miR-16 expression in the decidua of clinical samples. Furthermore, the luciferase reporter system demonstrated that miR-16 was found to directly downregulate the expression of VEGF by binding a specific sequence of its 3′-untranslated region (3′UTR). Collectively, these data strongly suggest that miR-16 regulates placental angiogenesis and development by targeting VEGF expression and is involved in the pathogenesis of RSA.
A simple, one-step hydrothermal approach to durable and robust superparamagnetic, superhydrophobic and electromagnetic wave-absorbing wood
Authors: Wang Hanwei , Yao Qiufang , Wang Chao , Fan Bitao , Sun Qingfeng , Jin Chunde , Xiong Ye , Chen Yipeng 
Published: October 2016

AbstractIn this work, lamellar MnFe2O4 was successfully planted on a wood surface through the association of hydrogen bonds via the one-pot hydrothermal method. Simultaneously, the fluoroalkylsilane (FAS-17) on the surface of the MnFe2O4 layer formed long-chain or network macromolecules through a poly-condensation process and provided a lower surface energy on the wood surface. The MnFe2O4/wood composite (FMW) presented superior superparamagnetism, superhydrophobicity and electromagnetic wave absorption performance. The results indicated a saturation magnetization of the FMW with excellent superparamagnetism of 28.24 emu·g−1. The minimum value of reflection loss of the FMW reached −8.29 dB at 16.39 GHz with a thickness of 3 mm. Even after mechanical impact and exposure to corrosive liquids, the FMW still maintained a superior superhydrophobicity performance.