bluuebunny/crossref_metadata_2025_split huggingface dataset:
Functional characterization of a gibberellin receptor and its application in alfalfa biomass improvement
Authors: Wang Xuemin , Li Jun , Ban Liping , Wu Yudi , Wu Xinming , Wang Yunqi , Wen Hongyu , Chapurin Vladimir , Dzyubenko Nikolay , Li Zhiyong , Wang Zan , Gao Hongwen 
Published: January 2017

AbstractBioactive gibberellins (GAs) are essential phytohormones involved in the regulation of many aspects of plant development. GA receptors are crucial in GA signal transduction in plants. The GA receptor GoGID1 promotes plant elongation and improves biomass production when ectopically expressed in tobacco. Here, we discovered that GoGID1 can interact with the DELLA proteins of Arabidopsis in the presence of gibberellic acid. GoGID1 partially or completely functionally rescued the phenotypes of the Arabidopsis double-mutants atgid1a/atgid1c and atgid1a/atgid1b. The overexpression of GoGID1 led to increases in plant height and biomass production in transgenic Arabidopsis plants. The GoGID1 gene enhanced GA sensitivity of the transgenic plants. More importantly, transgenic alfalfa plants overexpressing GoGID1 exhibited increased growth rates, heights and biomass and produced larger leaves when compared with the control plants. Thus, GoGID1 functions as a GA receptor, playing multiple roles in plant growth and development. The GoGID1 gene has the potential to be used in the genetic engineering of forage crops for biomass improvement.
Counteracting wetland overgrowth increases breeding and staging bird abundances
Authors: Lehikoinen Petteri , Lehikoinen Aleksi , Mikkola-Roos Markku , Jaatinen Kim 
Published: January 2017

AbstractHuman actions have led to loss and degradation of wetlands, impairing their suitability as habitat especially for waterbirds. Such negative effects may be mitigated through habitat management. To date scientific evidence regarding the impacts of these actions remains scarce. We studied guild specific abundances of breeding and staging birds in response to habitat management on 15 Finnish wetlands. In this study management actions comprised several means of vegetation removal to thwart overgrowth. Management cost efficiency was assessed by examining the association between site-specific costs and bird abundances. Several bird guilds exhibited positive connections with both habitat management as well as with invested funds. Most importantly, however, red-listed species and species with special conservation concern as outlined by the EU showed positive correlations with management actions, underlining the conservation value of wetland management. The results suggest that grazing was especially efficient in restoring overgrown wetlands. As a whole this study makes it clear that wetland habitat management constitutes a feasible conservation tool. The marked association between invested funds and bird abundance may prove to be a valuable tool for decision makers when balancing costs and impact of conservation measures against one another.
Evaluation of 10 SLE susceptibility loci in Asian populations, which were initially identified in European populations
Authors: Zhang Yue-miao , Zhou Xu-jie , Nath Swapan K. , Sun Celi , Zhao Ming-hui , Zhang Hong 
Published: January 2017

AbstractTen novel loci have been found to be associated with systemic lupus erythematosus (SLE) susceptibility by a recent genome-wide association study conducted in Europeans. To test their disease associations and genetic similarities/differences in Asians and Europeans, we genotyped the 10 novel single nucleotide polymorphisms (SNPs) and performed an association study. A Chinese cohort from Northern China was recruited as the discovery population, and three East Asian cohorts were included for independent replication. The 10 SNPs were genotyped using TaqMan allele discrimination assays. To prioritize the associated SNPs, different layers of the public functional data were integrated. Among the 10 SNPs, rs564799 in IL12A was shared in both ethnicities (Padjust = 5.91 × 10−4; odds ratio = 1.22, 1.10–1.35). We also confirmed the reported polymorphism rs7726414 in TCF7 in the current study (Padjust = 4.12 × 10−8; odds ratio = 1.46, 1.28–1.66). The directions and magnitudes of the allelic effects for most of the 10 SNPs were comparable between Europeans and Asians. However, higher risk allele frequencies and population-attributable risk percentages were observed in Asians than in Europeans. We also identified the most likely functional SNPs at each locus. In conclusion, both genetic similarities and differences across ethnicities have been observed, providing further evidence for a genetic basis of the high incidence of SLE in Asian ancestry.
Striatal Neurons Expressing D1 and D2 Receptors are Morphologically Distinct and Differently Affected by Dopamine Denervation in Mice
Authors: Gagnon D. , Petryszyn S. , Sanchez M. G. , Bories C. , Beaulieu J. M. , De Koninck Y. , Parent A. , Parent M. 
Published: January 2017

AbstractThe loss of nigrostriatal dopamine neurons in Parkinson’s disease induces a reduction in the number of dendritic spines on medium spiny neurons (MSNs) of the striatum expressing D1 or D2 dopamine receptor. Consequences on MSNs expressing both receptors (D1/D2 MSNs) are currently unknown. We looked for changes induced by dopamine denervation in the density, regional distribution and morphological features of D1/D2 MSNs, by comparing 6-OHDA-lesioned double BAC transgenic mice (Drd1a-tdTomato/Drd2-EGFP) to sham-lesioned animals. D1/D2 MSNs are uniformly distributed throughout the dorsal striatum (1.9% of MSNs). In contrast, they are heterogeneously distributed and more numerous in the ventral striatum (14.6% in the shell and 7.3% in the core). Compared to D1 and D2 MSNs, D1/D2 MSNs are endowed with a smaller cell body and a less profusely arborized dendritic tree with less dendritic spines. The dendritic spine density of D1/D2 MSNs, but also of D1 and D2 MSNs, is significantly reduced in 6-OHDA-lesioned mice. In contrast to D1 and D2 MSNs, the extent of dendritic arborization of D1/D2 MSNs appears unaltered in 6-OHDA-lesioned mice. Our data indicate that D1/D2 MSNs in the mouse striatum form a distinct neuronal population that is affected differently by dopamine deafferentation that characterizes Parkinson’s disease.
Intraspecific geographic variation in rod and cone visual pigment sensitivity of a parrot, Platycercus elegans
Authors: Knott Ben , Berg Mathew L. , Ribot Raoul F. H. , Endler John A. , Bennett Andrew T. D. 
Published: January 2017

AbstractVariation in wavelength sensitivity among subspecies is unknown among vertebrates. The parrot Platycercus elegans has extreme plumage variation between subspecies ranging from pale yellow to crimson which, with differences in background colour and light environment between subspecies, makes it a good candidate for the evolution of within-species differences in vision. We report differences in visual pigments between populations of P. elegans from two subspecies, providing the first known support for population and subspecies variation in visual pigments within a vertebrate species; it is also the first instance of intraspecific variation in rod sensitivity within any vertebrate species. Differences in wavelength sensitivity of rods and cones corresponded to geographic differences in plumage colour. Between study populations, visual pigments varied but not oil droplets. Adaptive functions for the visual pigment differences are untested but they could cause divergence in behaviours associated with colour as well as in dim light, and provide insights into the role of senses in divergence and speciation.
Identification of a novel selective PPARγ ligand with a unique binding mode and improved therapeutic profile in vitro
Authors: Yi Wei , Shi Jingjing , Zhao Guanguan , Zhou X. Edward , Suino-Powell Kelly , Melcher Karsten , Xu H. Eric 
Published: January 2017

AbstractThiazolidinediones (TZD) function as potent anti-diabetic drugs through their direct action on the nuclear receptor peroxisome proliferator-activated receptor γ (PPARγ), but their therapeutic benefits are compromised by severe side effects. To address this concern, here we developed a potent “hit” compound, VSP-51, which is a novel selective PPARγ-modulating ligand with improved therapeutic profiles in vitro compared to the multi-billion dollar TZD drug rosiglitazone (Rosi). Unlike Rosi, VSP-51 is a partial agonist of PPARγ with improved insulin sensitivity due to its ability to bind PPARγ with high affinity without stimulating adipocyte differentiation and the expression of adipogenesis-related genes. We have determined the crystal structure of the PPARγ ligand-binding domain (LBD) in complex with VSP-51, which revealed a unique mode of binding for VSP-51 and provides the molecular basis for the discrimination between VSP-51 from TZDs and other ligands such as telmisartan, SR1663 and SR1664. Taken together, our findings demonstrate that: a) VSP-51 can serve as a promising candidate for anti-diabetic drug discovery; and b) provide a rational basis for the development of future pharmacological agents targeting PPARγ with advantages over current TZD drugs.
Protective effect of butin against ischemia/reperfusion-induced myocardial injury in diabetic mice: involvement of the AMPK/GSK-3β/Nrf2 signaling pathway
Authors: Duan Jialin , Guan Yue , Mu Fei , Guo Chao , Zhang Enhu , Yin Ying , Wei Guo , Zhu Yanrong , Cui Jia , Cao Jinyi , Weng Yan , Wang Yanhua , Xi Miaomiao , Wen Aidong 
Published: January 2017

AbstractHyperglycemia-induced reactive oxygen species (ROS) generation contributes to development of diabetic cardiomyopathy (DCM). This study was designed to determine the effect of an antioxidant butin (BUT) on ischemia/reperfusion-induced myocardial injury in diabetic mice. Myocardial ischemia/reperfusion (MI/R) was induced in C57/BL6J diabetes mice. Infarct size and cardiac function were detected. For in vitro study, H9c2 cells were used. To clarify the mechanisms, proteases inhibitors or siRNA were used. Proteins levels were investigated by Western blotting. In diabetes MI/R model, BUT significantly alleviated myocardial infarction and improved heart function, together with prevented diabetes-induced cardiac oxidative damage. The expression of Nrf2, AMPK, AKT and GSK-3β were significantly increased by BUT. Furthermore, in cultured H9c2 cardiac cells silencing Nrf2 gene with its siRNA abolished the BUT’s prevention of I/R-induced myocardial injury. Inhibition of AMPK and AKT signaling by relative inhibitor or specific siRNA decreased the level of BUT-induced Nrf2 expression, and diminished the protective effects of BUT. The interplay relationship between GSK-3β and Nrf2 was also verified with relative overexpression and inhibitors. Our findings indicated that BUT protected against I/R-induced ROS-mediated apoptosis by upregulating the AMPK/Akt/GSK-3β pathway, which further activated Nrf2-regulated antioxidant enzymes in diabetic cardiomyocytes exposed to I/R.
Effects of non-exciton components excited by broadband pulses on quantum beats in a GaAs/AlAs multiple quantum well
Authors: Kojima Osamu , Iwasaki Yuki , Kita Takashi , Akahane Kouichi 
Published: January 2017

AbstractIn this study, we report the effect of the excitation of non-exciton components caused by broadband pulses on quantum beat oscillation. Using a spectrally controlled pump pulse, a long-lived oscillation is clearly observed, and the pump-power dependence shows the suppression of the dephasing rate of the oscillation. Our results from incoherent carrier generation using a continuous wave laser demonstrate that the non-exciton components behaving as free carriers increase the oscillation dephasing rate.
Nano-biomimetic carriers are implicated in mechanistic evaluation of intracellular gene delivery
Authors: Alipour Mohsen , Hosseinkhani Saman , Sheikhnejad Reza , Cheraghi Roya 
Published: January 2017

AbstractSeveral tissue specific non-viral carriers have been developed for gene delivery purposes. However, the inability to escape endosomes, undermines the efficacy of these carriers. Researchers inspired by HIV and influenza virus, have randomly used Gp41 and H5WYG fusogenic peptides in several gene delivery systems without any rational preference. Here for the first time, we have genetically engineered two Nano-biomimetic carriers composed of either HWYG (HNH) or Gp41 (GNH) that precisely provide identical conditions for the study and evaluation of these fusogenic peptides. The luciferase assay demonstrated a two-fold higher transfection efficiency of HNH compared to GNH. These nanocarriers also displayed equivalent properties in terms of DNA binding ability and DNA protection against serum nucleases and formed similar nanoparticles in terms of surface charge and size. Interestingly, hemolysis and cellular analysis demonstrated both of nanoparticles internalized into cells in similar rate and escaped from endosome with different efficiency. Furthermore, the structural analysis revealed the mechanisms responsible for the superior endosomal escaping capability of H5WYG. In conclusion, this study describes the rationale for using H5WYG peptide to deliver nucleic acids and suggests that using nano-biomimetic carriers to screen different endosomal release peptides, improves gene delivery significantly.
Effects of interspecific interaction-linked habitat factors on moose resource selection and environmental stress
Authors: Bao Heng , Fryxell John M. , Liu Hui , Dou Hongliang , Ma Yingjie , Jiang Guangshun 
Published: January 2017

AbstractResource selection of herbivores is a complex ecological process that operates in relation to biological or non-biological factors, which may affect the feeding and movement, and subsequently their spatial distribution and environmental stress. Here, we estimated moose (Alces alces cameloides) resource selection for habitat variables and the effect of interspecific interactions related to roe deer (Capreolus pygargus bedfordi) on its population distribution and environmental stress in the Khingan Mountain region of northeast China at local and regional scales. Different response patterns of moose resource selection, spatial distribution, and environmental stress to interspecific interaction-linked habitat factors were shown at the two scales. A general ecological chain, response of moose to interspecific interaction-linked habitat factors, was exhibited at the regional scale, and at the local scale, heterogeneous responses, linkages of habitat selection and environmental stress of moose population might be driven by different interspecific interaction patterns. Our study firstly suggested that moose resource selection, food availability, diet quality, population density and environmental stress indicators were impacted by interactions with the distribution of other sympatric herbivore species and showed differences in ecological response chains at various spatial scales. These findings are useful for sympatric herbivore assembly conservation, habitat quality monitoring and management.
Converting Ni-loaded biochars into supercapacitors: Implication on the reuse of exhausted carbonaceous sorbents
Authors: Wang Yifan , Zhang Yue , Pei Lei , Ying Diwen , Xu Xiaoyun , Zhao Ling , Jia Jinping , Cao Xinde 
Published: January 2017

AbstractBiochar derived from waste biomass has proven as a promising sorbent for removal of heavy metals from wastewater. However, proper disposal of such a heavy metal-containing biochar is challengeable. The major objective of this study is to create a reuse way by converting the heavy metal-loaded biochar into supercapacitor. Two biochars were produced from dairy manure and sewage sludge, respectively, and subjected to sorption of Ni from solution, and then the Ni-loaded biochar underwent microwave treatments for fabrication of supercapacitor. The specific capacitance of biochar supercapacitor increased with Ni loading, especially the Ni-loaded biochar further treated with microwave in which the capacitance increased by over 2 times, compared to the original biochar supercapacitors. The increase of capacitance in the Ni-loaded biochar supercapacitor following microwave treatment was mainly attributed to the conversion of Ni into NiO and NiOOH, which was evidenced by X-ray diffraction and X-ray photoelectron spectroscopy. The biochar supercapacitors, especially microwave-treated Ni-loaded biochar supercapacitors exhibited the high stability of specific capacitance, with less than 2% loss after 1000 charge-discharge cycles. This study demonstrated that Ni-loaded biochar can be further utilized for generation of supercapacitor, providing a potential way for the reuse of exhausted carbonaceous sorbents.
Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features
Authors: Lanzós Andrés , Carlevaro-Fita Joana , Mularoni Loris , Reverter Ferran , Palumbo Emilio , Guigó Roderic , Johnson Rory 
Published: January 2017

AbstractLong noncoding RNAs (lncRNAs) represent a vast unexplored genetic space that may hold missing drivers of tumourigenesis, but few such “driver lncRNAs” are known. Until now, they have been discovered through changes in expression, leading to problems in distinguishing between causative roles and passenger effects. We here present a different approach for driver lncRNA discovery using mutational patterns in tumour DNA. Our pipeline, ExInAtor, identifies genes with excess load of somatic single nucleotide variants (SNVs) across panels of tumour genomes. Heterogeneity in mutational signatures between cancer types and individuals is accounted for using a simple local trinucleotide background model, which yields high precision and low computational demands. We use ExInAtor to predict drivers from the GENCODE annotation across 1112 entire genomes from 23 cancer types. Using a stratified approach, we identify 15 high-confidence candidates: 9 novel and 6 known cancer-related genes, including MALAT1, NEAT1 and SAMMSON. Both known and novel driver lncRNAs are distinguished by elevated gene length, evolutionary conservation and expression. We have presented a first catalogue of mutated lncRNA genes driving cancer, which will grow and improve with the application of ExInAtor to future tumour genome projects.
Hazy Transparent Cellulose Nanopaper
Authors: Hsieh Ming-Chun , Koga Hirotaka , Suganuma Katsuaki , Nogi Masaya 
Published: January 2017

AbstractThe aim of this study is to clarify light scattering mechanism of hazy transparent cellulose nanopaper. Clear optical transparent nanopaper consists of 3–15 nm wide cellulose nanofibers, which are obtained by the full nanofibrillation of pulp fibers. At the clear transparent nanopaper with 40 μm thickness, their total transmittance are 89.3–91.5% and haze values are 4.9–11.7%. When the pulp fibers are subjected to weak nanofibrillation, hazy transparent nanopapers are obtained. The hazy transparent nanopaper consists of cellulose nanofibers and some microsized cellulose fibers. At the hazy transparent nanopaper with 40 μm thickness, their total transmittance were constant at 88.6–92.1% but their haze value were 27.3–86.7%. Cellulose nanofibers are solid cylinders, whereas the pulp fibers are hollow cylinders. The hollow shape is retained in the microsized cellulose fibers, but they are compressed flat inside the nanopaper. This compressed cavity causes light scattering by the refractive index difference between air and cellulose. As a result, the nanopaper shows a hazy transparent appearance and exhibits a high thermal durability (295–305 °C), and low thermal expansion (8.5–10.6 ppm/K) because of their high density (1.29–1.55 g/cm3) and crystallinity (73–80%).
LPS-induced inflammatory response is suppressed by Wnt inhibitors, Dickkopf-1 and LGK974
Authors: Jang Jaewoong , Jung Yoonju , Kim Youngeun , Jho Eek-hoon , Yoon Yoosik 
Published: January 2017

AbstractIn this study, LPS-induced inflammatory responses in BEAS-2B human bronchial epithelial cells and human umbilical vein endothelial cell (HUVEC)s were found to be prevented by Dickkopf-1 (DKK-1), a secreted Wnt antagonist, and LGK974, a small molecular inhibitor of the Wnt secretion. LPS-induced IκB degradation and NF-κB nuclear translocation as well as the expressions of pro-inflammatory genes including IL-6, IL-8, TNF- α, IL-1β, MCP-1, MMP-9, COX-2 and iNOS, were all suppressed by DKK-1 and LGK974 in a dose-dependent manner. The suppressive effects of LGK974 on NF-κB, IκB, and pro-inflammatory gene expression were rescued by ectopic expression of β-catenin, suggesting that the anti-inflammatory activity of LGK974 is mediated by modulation of the Wnt/β-catenin pathway and not by unrelated side effects. When Wnt recombinant proteins were treated to cells, Wnt3a and Wnt5a significantly induced pro-inflammatory gene expressions, while Wnt7a and Wnt10b showed little effects. It was also found that Wnt3a and Wnt5a expressions were significantly induced by LPS treatment. Consistently, knockdown of Wnt3a and Wnt5a blocked LPS-induced inflammatory responses, while treatment of recombinant Wnt3a and Wnt5a proteins rescued the inhibition of inflammatory responses by LGK974. Findings of this study showed that DKK-1 and LGK974 suppress LPS-induced inflammatory response by modulating Wnt/β-catenin pathway.
Attention Bias of Avoidant Individuals to Attachment Emotion Pictures
Authors: Liu Ying , Ding Yi , Lu Luluzi , Chen Xu 
Published: January 2017

AbstractHow attachment style affects emotion processing is tightly connected with individuals’ attention bias. This experiment explored avoidant individuals’ attentional engagement and attentional disengagement using a cue-target paradigm in fMRI. The experimental group consisted of 17 avoidant participants, while the control group consisted of 16 secure participants; these were identified by the Experiences in Close Relationships inventory and the Relationship Questionnaire. Each reacted to pictures of positive parent-child attachment, negative parent-child attachment, positive romantic attachment, negative romantic attachment, and neutral non-attachment. Behaviorally, avoidant individuals were slower than secure individuals in responding to emotions and their attentional disengagement effect for negative parent-child emotions was stronger than positive ones. fMRI results showed that avoidant compared to secure individuals activated more strongly in the right superior temporal gyrus, middle occipital gyrus, and the left medial frontal gyrus, middle occipital gyrus, supplementary motor area, and cingulate gyrus. They also showed stronger activation in disengaging from positive than negative emotions in the bilateral fusiform and middle occipital gyri. In conclusion, avoidant individuals could detect emotions as effective as secure individuals in attentioal engaging stages. They can disengage from positive emotions with effective cognitive resources and were harder to get rid of negative emotions with insufficient resource.