bluuebunny/crossref_metadata_2025_split huggingface dataset:
Hypomagnesemia and clinical benefits of anti-EGFR monoclonal antibodies in wild-type KRAS metastatic colorectal cancer: a systematic review and meta-analysis
Authors: Hsieh Meng-Chiao , Wu Chun-Feng , Chen Chun-Wei , Shi Chung-Sheng , Huang Wen-Shih , Kuan Feng-Che 
Published: January 2018

AbstractHypomagnesemia is a recognized side-effect of cetuximab- or panitumumab-based chemotherapy for metastatic colorectal cancer (mCRC). The clinical relevance of hypomagnesemia is under debate. Thus, a systematic review and meta-analysis of retrospective studies and randomized clinical trials (RCTs) comparing hypomagnesemia with normal magnesium levels in wild-type KRAS mCRC was performed. One RCT, two retrospective studies, and two American Society of Clinical Oncology (ASCO) and European Society for Medical Oncology (ESMO) conference presentations from phase III RCTs involving 1723 patients were included in this study. Patients with hypomagnesemia demonstrated better progression-free survival (PFS) (Hazard ratio [HR]: 0.64; 95% confidence interval [CI]: 0.47–0.88), overall survival (OS) (HR: 0.72; 95% CI: 0.53–0.92), and objective response rate (ORR) (Risk ratio [RR]: 1.81; 95% confidence interval [CI]: 1.30–2.52). By subgroup analysis, frontline, later lines or combination therapy with hypomagnesemia were associated with PFS benefits (HR: 0.78; 95% CI: 0.62–0.98; HR: 0.60; 95% CI: 0.40–0.90; HR: 0.62; 95% CI: 0.41–0.94, respectively). In patients with wild-type KRAS mCRC, hypomagnesemia is associated with better clinical benefits of PFS, OS and ORR when treated with cetuximab- or panitumumab-based chemotherapy. Future clinical trials should corroborate its predictive role.
The Effect of a Slowly Rocking Bed on Sleep
Authors: Omlin Ximena , Crivelli Francesco , Näf Monika , Heinicke Lorenz , Skorucak Jelena , Malafeev Alexander , Fernandez Guerrero Antonio , Riener Robert , Achermann Peter 
Published: January 2018

AbstractRocking movements appear to affect human sleep. Recent research suggested a facilitated transition from wake to sleep and a boosting of slow oscillations and sleep spindles due to lateral rocking movements during an afternoon nap. This study aimed at investigating the effect of vestibular stimulation on sleep onset, nocturnal sleep and its potential to increase sleep spindles and slow waves, which could influence memory performance. Polysomnography was recorded in 18 males (age: 20–28 years) during three nights: movement until sleep onset (C1), movement for 2 hours (C2), and one baseline (B) without motion. Sleep dependent changes in memory performance were assessed with a word-pair learning task. Although subjects preferred nights with vestibular stimulation, a facilitated sleep onset or a boost in slow oscillations was not observed. N2 sleep and the total number of sleep spindles increased during the 2 h with vestibular stimulation (C2) but not over the entire night. Memory performance increased over night but did not differ between conditions. The lack of an effect might be due to the already high sleep efficiency (96%) and sleep quality of our subjects during baseline. Nocturnal sleep in good sleepers might not benefit from the potential facilitating effects of vestibular stimulation.
Comparative transcriptome analysis reveals molecular response to salinity stress of salt-tolerant and sensitive genotypes of indica rice at seedling stage
Authors: Wang Jun , Zhu Jinyan , Zhang Yadong , Fan Fangjun , Li Wenqi , Wang Fangquan , Zhong Weigong , Wang Cailin , Yang Jie 
Published: January 2018

AbstractAbiotic stresses, such as salinity, greatly threaten the growth and productivity of plants. Rice (Oryza sativa L.) is one of the most important food crops, as well as a monocot model for genomic research. To obtain a global view of the molecular response to salinity stress, we conducted a leaf transcriptome analysis on rice seedlings. Two cultivars of rice subspecies indica, including the salt-tolerant genotype Xian156 and the salt-sensitive genotype IR28, were used in the present study. Eighteen RNA libraries were obtained from these two genotypes at three timepoints (0 h, 48 h and 72 h) after applying salinity stress. We obtained the reference-guided assembly of the rice transcriptome, which resulted in 1,375 novel genes, including 1,371 annotated genes. A comparative analysis between genotypes and time points showed 5,273 differentially expressed genes (DEGs), of which 286 DEGs were only found in the tolerant genotype. The Disease resistance response protein 206 and TIFY 10 A were differentially expressed, which were validated by quantitative real-time PCR. The differentially expressed genes identified through the mRNA transcriptome, along with the structure, provide a revealing insight into rice molecular response to salinity stress and underlie the salinity tolerance mechanism between genotypes.
The “weak” interdependence of infrastructure systems produces mixed percolation transitions in multilayer networks
Authors: Liu Run-Ran , Eisenberg Daniel A. , Seager Thomas P. , Lai Ying-Cheng 
Published: January 2018

AbstractPrevious studies of multilayer network robustness model cascading failures via a node-to-node percolation process that assumes “strong” interdependence across layers–once a node in any layer fails, its neighbors in other layers fail immediately and completely with all links removed. This assumption is not true of real interdependent infrastructures that have emergency procedures to buffer against cascades. In this work, we consider a node-to-link failure propagation mechanism and establish “weak” interdependence across layers via a tolerance parameter α which quantifies the likelihood that a node survives when one of its interdependent neighbors fails. Analytical and numerical results show that weak interdependence produces a striking phenomenon: layers at different positions within the multilayer system experience distinct percolation transitions. Especially, layers with high super degree values percolate in an abrupt manner, while those with low super degree values exhibit both continuous and discontinuous transitions. This novel phenomenon we call mixed percolation transitions has significant implications for network robustness. Previous results that do not consider cascade tolerance and layer super degree may be under- or over-estimating the vulnerability of real systems. Moreover, our model reveals how nodal protection activities influence failure dynamics in interdependent, multilayer systems.
A Neuro-Musculo-Skeletal Model for Insects With Data-driven Optimization
Authors: Guo Shihui , Lin Juncong , Wöhrl Toni , Liao Minghong 
Published: January 2018

AbstractSimulating the locomotion of insects is beneficial to many areas such as experimental biology, computer animation and robotics. This work proposes a neuro-musculo-skeletal model, which integrates the biological inspirations from real insects and reproduces the gait pattern on virtual insects. The neural system is a network of spiking neurons, whose spiking patterns are controlled by the input currents. The spiking pattern provides a uniform representation of sensory information, high-level commands and control strategy. The muscle models are designed following the characteristic Hill-type muscle with customized force-length and force-velocity relationships. The model parameters, including both the neural and muscular components, are optimized via an approach of evolutionary optimization, with the data captured from real insects. The results show that the simulated gait pattern, including joint trajectories, matches the experimental data collected from real ants walking in the free mode. The simulated character is capable of moving at different directions and traversing uneven terrains.
Terahertz Dispersion Characteristics of Super-aligned Multi-walled Carbon Nanotubes and Enhanced Transmission through Subwavelength Apertures
Authors: Wang Yue , Duan Guangwu , Zhang Liying , Ma Lihua , Zhao Xiaoguang , Zhang Xin 
Published: January 2018

AbstractThe terahertz (THz) dielectric properties of super-aligned multi-walled carbon nanotube (MWCNT) films were characterized in the frequency range from 0.1 to 2.5 THz with terahertz time-domain spectroscopy. The refractive index, effective permittivity, and conductivity were retrieved from the measured transmission spectra with THz incident wave polarized parallel and perpendicular to the orientation of carbon nanotubes (CNTs), and a high degree of polarization dependence was observed. The Drude-Lorentz model combined with Maxwell-Garnett effective medium theory was employed to explain the experimental results, revealing an obvious metallic behavior of the MWCNT films. Moreover, rectangular aperture arrays were patterned on the super-aligned MWCNT films with laser-machining techniques, and the transmission measurement demonstrated an extraordinarily enhanced transmission characteristic of the samples with incident wave polarized parallel to the orientation of the CNTs. Surface plasmon polaritons were employed to explain the extraordinarily enhanced transmission with high accuracy, and multi-order Fano profile was applied to model the transmission spectra. A high degree of agreement was exhibited among the experimental, numerical, and theoretical results.
The mechanistic link between health and gut microbiota diversity
Authors: Larsen Olaf F. A. , Claassen Eric 
Published: January 2018

AbstractAlthough numerous reports link a decreased diversity of the gut microbiota to a declined health status, to date no mechanistic motivation for this exists. Here, we show by applying first principles basic graph theory on small networks that higher diversity within such a network indeed leads to more efficient systems and redundancy. Our results quantitatively support earlier hypothetical considerations on gut microbiota richness with respect to these parameters. Our simulations show that higher species diversity leads to higher resilience within small microbiological ecosystems, like being present in the gut microbiota. This notion should provide an ingredient when developing new interventional strategies within the domain of microbiota management.
Impact of thickness variation on structural, dielectric and piezoelectric properties of (Ba,Ca)(Ti,Zr)O3 epitaxial thin films
Authors: Ion Valentin , Craciun Floriana , Scarisoreanu Nicu D. , Moldovan Antoniu , Andrei Andreea , Birjega Ruxandra , Ghica Corneliu , Di Pietrantonio Fabio , Cannata Domenico , Benetti Massimiliano , Dinescu Maria 
Published: January 2018

AbstractIt is shown that the dielectric and piezoelectric properties of Ba(Ti0.8Zr0.2)O3-x(Ba0.7Ca0.3)TiO3(x = 0.45) (BCTZ 45) epitaxial thin films have a nontrivial dependence on film thickness. BCTZ 45 epitaxial films with different thicknesses (up to 400 nm) have been deposited on SrTiO3by pulsed laser deposition and investigated by different combined techniques: conventional and off-axis X-ray diffraction, high resolution transmission electron microscopy and dielectric and piezoforce microscopy. The changes occurring in epitaxial films when their thickness increases have been attributed to a partial relaxation of misfit strain, driving the induced tetragonal symmetry in very thin films to the original rhombohedral symmetry of the bulk material in the thickest film, which influences directly and indirectly the dielectric and piezoelectric properties.
Using Transfer Function Analysis to develop biologically and economically efficient restoration strategies
Authors: Bialic-Murphy Lalasia , Gaoue Orou G. , Knight Tiffany 
Published: January 2018

AbstractRare species across taxonomic groups and biomes commonly suffer from multiple threats and require intensive restoration, including population reintroduction and threat control. Following reintroduction, it is necessary to identify what level of threat control is needed for species to persist over time. Population reintroduction and threat control are time intensive and costly. Thus, it is pragmatic to develop economically efficient restoration strategies. We combined transfer function analysis and economic cost analysis to evaluate the effects of biologically meaningful increases in demographic processes on the persistence of a reintroduced population of a Hawaii endemic long-lived shrub, Delissea waianaeensis. We show that an increase in fertility by 0.419 following the suppression of non-native rodents or an increase by 0.098 in seedling growth following the suppression of invasive molluscs would stabilize the population (i.e., λ = 1). Though a greater increase in fertility than seedling growth was needed for the reintroduced population to persist over time, increasing fertility by suppressing rodents was the most cost effective restoration strategy. Our study emphasizes the importance of considering the effects of large increases in plant vital rates in population projections and incorporating the economic cost of management actions in demographic models when developing restoration plans for endangered species.
Curcumin targets multiple enzymes involved in the ROS metabolic pathway to suppress tumor cell growth
Authors: Larasati Yonika Arum , Yoneda-Kato Noriko , Nakamae Ikuko , Yokoyama Takashi , Meiyanto Edy , Kato Jun-ya 
Published: January 2018

AbstractCurcumin has been reported to exhibit anti-tumorigenic activity; however, since its precise actions remain unclear, its effects are considered to be deceptive. In the present study, we confirmed the anti-tumorigenic effects of curcumin on CML-derived leukemic cells in a xenograft model and in vitro culture system. In vitro pull-down and mass analyses revealed a series of enzymes (carbonyl reductase, glutathione-S-transferase, glyoxalase, etc.) that function in a reactive oxygen species (ROS) metabolic pathway as curcumin-binding targets, the expression of which was up-regulated in human leukemia. Curcumin increased ROS levels over the threshold in leukemic cells, and the antioxidant, glutathione (GSH) and overexpression of curcumin-binding enzymes partially mitigated the up-regulation of ROS and growth inhibition caused by curcumin. These results show that curcumin specifically inhibits tumor growth by increasing ROS levels over the threshold through the miscellaneous inhibition of ROS metabolic enzymes. Curcumin has potential in therapy to regulate ROS levels in tumor cells, thereby controlling tumor growth.
X-Ray Dark-field Imaging to Depict Acute Lung Inflammation in Mice
Authors: Hellbach Katharina , Meinel Felix G. , Conlon Thomas M. , Willer Konstantin , Yaroshenko Andre , Velroyen Astrid , Braunagel Margarita , Auweter Sigrid , Reiser Maximilian F. , Eickelberg Oliver , Pfeiffer Franz , Yildirim Ali Ö. 
Published: January 2018

AbstractThe aim of this study was to evaluate the feasibility of early stage imaging of acute lung inflammation in mice using grating-based X-ray dark-field imaging in vivo. Acute lung inflammation was induced in mice by orotracheal instillation of porcine pancreatic elastase. Control mice received orotracheal instillation of PBS. Mice were imaged immediately before and 1 day after the application of elastase or PBS to assess acute changes in pulmonary structure due to lung inflammation. Subsequently, 6 mice from each group were sacrificed and their lungs were lavaged and explanted for histological analysis. A further 7, 14 and 21 days later the remaining mice were imaged again. All images were acquired with a prototype grating-based small-animal scanner to generate dark-field and transmission radiographs. Lavage confirmed that mice in the experimental group had developed acute lung inflammation one day after administration of elastase. Acute lung inflammation was visible as a striking decrease in signal intensity of the pulmonary parenchyma on dark-field images at day 1. Quantitative analysis confirmed that dark-field signal intensity at day 1 was significantly lower than signal intensities measured at the remaining timepoints, confirming that acute lung inflammation can be depicted in vivo with dark-field radiography.
Cultural effects on computational metrics of spatial and temporal context
Authors: Wright Nicholas D. , Grohn Jan , Song Chen , Rees Geraint , Lawson Rebecca P. 
Published: January 2018

AbstractThe concept of “prediction error” - the difference between what occurred and was expected - is key to understanding the cognitive processes of human decision making. Expectations have to be learned so the concept of prediction error critically depends on context, specifically thetemporalcontext of probabilistically related events and their changes across time (i.e. volatility). While past research suggests context differently affects some cognitive processes in East Asian and Western individuals, it is currently unknown whether this extends to computationally-grounded measures of learning and prediction error. Here we compared Chinese and British nationals in an associative learning task that quantifies behavioural effects of prediction error, and—through a hierarchical Bayesian learning model—also captures how individuals learn about probabilistic relationships and their volatility. For comparison, we also administered a psychophysical task, the tilt illusion, to assess cultural differences in susceptibility tospatialcontext. We found no cultural differences in the effect of spatial context on perception. In the domain of temporal context there was no effect of culture on sensitivity to prediction error, or learning about volatility, but some suggestion that Chinese individuals may learn more readily about probabilistic relationships.
Synergistic Anti-tumour Effects of Quercetin and Oncolytic Adenovirus expressing TRAIL in Human Hepatocellular Carcinoma
Authors: Zou Hai , Zheng Yong-fa , Ge Wei , Wang Shi-bing , Mou Xiao-zhou 
Published: January 2018

AbstractThe combination of oncolytic adenoviruses and specific chemotherapy agents is fast emerging as a novel therapeutic approach for resistan the patocellular carcinoma (HCC) cells. A detailed analysis of the network between adenovirus and chemotherapeutic agents can help design an effective strategy to combat HCC. We sought to investigate whether a combined treatment of ZD55-TRAIL and quercetin can have an enhanced cell-killing effect on HCC cells. In-vitro experiments showed that quercetin can enhance ZD55-TRAIL mediated growth inhibition and apoptosis in HCC cells. In addition, we showed that quercetin reduced ZD55-TRAIL mediated NF-κB activation and down-regulated its downstream targets, which in turn promoted the pro-apoptotic action of ZD55-TRAIL. Furthermore, in-vivo experiments in mice injected with HuH-7 cells resulted in significantly greater reduction in tumour growth and volume following combined ZD55-TRAIL and quercetin treatment. In conclusion, we demonstrated that quercetin could sensitize human HCC cells to apoptosis via ZD55-TRAIL in-vitro and in-vivo and presented ZD55-TRAIL and quercetin combination as a suitable anti-HCC therapy.
High expression of SMARCA4 or SMARCA2 is frequently associated with an opposite prognosis in cancer
Authors: Guerrero-Martínez Jose A. , Reyes Jose C. 
Published: January 2018

AbstractThe gene encoding the ATPase of the chromatin remodeling SWI/SNF complexesSMARCA4(BRG1) is often mutated or silenced in tumors, suggesting a role as tumor suppressor. Nonetheless, recent reports show requirement of SMARCA4 for tumor cells growth. Here, we performed a computational meta-analysis using gene expression, prognosis, and clinicopathological data to clarify the role of SMARCA4 and the alternative SWI/SNF ATPase SMARCA2 (BRM) in cancer. We show that while theSMARCA4gene is mostly overexpressed in tumors,SMARCA2is almost invariably downexpressed in tumors. HighSMARCA4expression was associated with poor prognosis in many types of tumors, including liver hepatocellular carcinoma (LIHC), and kidney renal clear cell carcinoma (KIRC). In contrast, highSMARCA2expression was associated with good prognosis. We compared tumors with high versus low expression ofSMARCA4orSMARCA2in LIHC and KIRC cohorts from The Cancer Genome Atlas. While a high expression ofSMARCA4is associated with aggressive tumors, a high expression ofSMARCA2is associated with benign differentiated tumors, suggesting that SMARCA4 and SMARCA2 play opposite roles in cancer. Our results demonstrate that expression ofSMARCA4andSMARCA2have a high prognostic value and challenge the broadly accepted general role of SMARCA4 as a tumor suppressor.
Diverse patterns of molecular changes in the mechano-responsiveness of focal adhesions
Authors: Malik-Sheriff Rahuman S. , Imtiaz Sarah , Grecco Hernán E. , Zamir Eli 
Published: January 2018

AbstractFocal adhesions anchor contractile actin fibers with the extracellular matrix, sense the generated tension and respond to it by changing their morphology and composition. Here we ask how this mechanosensing is enabled at the protein-network level, given the modular assembly and multitasking of focal adhesions. To address this, we applied a sensitive 4-color live cell imaging approach, enabling monitoring patterns of molecular changes in single focal adhesions. Co-imaging zyxin, FAK, vinculin and paxillin revealed heterogeneities in their responses to Rho-associated kinase (ROCK)-mediated perturbations of actomyosin contractility. These responses were rather weakly correlated between the proteins, reflecting diverse compositional changes in different focal adhesions. This diversity is partially attributable to the location of focal adhesions, their area, molecular content and previous contractility perturbations, suggesting that integration of multiple local cues shapes differentially focal adhesion mechano-responsiveness. Importantly, the compositional changes upon ROCK perturbations exhibited distinct paths in different focal adhesions. Moreover, the protein exhibiting the strongest response to ROCK perturbations varied among different focal adhesions. The diversity in response patterns is plausibly enabled by the modular mode of focal adhesions assembly and can provide them the needed flexibility to perform multiple tasks by combining optimally a common set of multifunctional components.
Prevalence and Risk Factors of self-reported dry eye in Brazil using a short symptom questionnaire
Authors: Castro Julia Silvestre de , Selegatto Iara Borin , Castro Rosane Silvestre de , Miranda Eliana C. M. , de Vasconcelos José Paulo Cabral , de Carvalho Keila Monteiro , Arieta Carlos Eduardo Leite , Alves Monica 
Published: January 2018

AbstractTo evaluate dry eye prevalence and investigate associated risk factors in Brazil by applying a short questionnaire of symptoms and risk factors. A cross-sectional study of 3,107 participants from all the five different geopolitical regions of Brazil. Overall prevalence of dry eye in this study population was 12.8%. Dry eye previous diagnosis was reported by 10.2% and presence of severe symptoms in 4.9%. Logistic regression analysis confirmed some significantly risk factors, such as female sex (Odds Ratio (OR) 1.74; 95% Confidence Interval (CI): 1.12–1.93), age ≥60 year-old (OR 2.00; 95%CI: 1.44–2.77), history of ocular surgery (OR 1.84; 95%CI: 1.30–2.60), contact lens wear (OR 1.93; 95%CI: 1.36–2.73), cancer treatment (OR 3.03; 95%CI: 1.36–6.59), computer use >6 hours per day (OR 1.77; 95%CI: 1.36–2.31), antidepressants (OR 1.61; 95%CI: 1.12–2.31) and anti-allergy (OR 2.11; 95%CI: 1.54–2.89) medications. Nevertheless, when stratified by regions, each one had its own significant factors and inherent characteristics. This is the first study about prevalence and risk factors of dry eye in a large population sample from all regions of Brazil. Dry eye is a common condition in the Brazilian population and prevalence rates varies substantially in the different geographic regions of the country, possibly reflecting climate and socioeconomic discrepancies.