bluuebunny/crossref_metadata_2025_split huggingface dataset:
Integrating Genomic Resources with Electronic Health Records using the HL7 Infobutton Standard
Authors: Overby Casey , Del Fiol Guilherme , Rubinstein Wendy , Maglott Donna , Nelson Tristan , Milosavljevic Aleksandar , Martin Christa , Goehringer Scott , Freimuth Robert , Williams Marc , Heale Bret 
Published: August 2016

SummaryThe Clinical Genome Resource (ClinGen) Electronic Health Record (EHR) Workgroup aims to integrate ClinGen resources with EHRs. A promising option to enable this integration is through the Health Level Seven (HL7) Infobutton Standard. EHR systems that are certified according to the US Meaningful Use program provide HL7-compliant infobutton capabilities, which can be leveraged to support clinical decision-making in genomics.To integrate genomic knowledge resources using the HL7 infobutton standard. Two tactics to achieve this objective were: (1) creating an HL7-compliant search interface for ClinGen, and (2) proposing guidance for genomic resources on achieving HL7 Infobutton standard accessibility and compliance.We built a search interface utilizing OpenInfobutton, an open source reference implementation of the HL7 Infobutton standard. ClinGen resources were assessed for readiness towards HL7 compliance. Finally, based upon our experiences we provide recommendations for publishers seeking to achieve HL7 compliance.Eight genomic resources and two sub-resources were integrated with the ClinGen search engine via OpenInfobutton and the HL7 infobutton standard. Resources we assessed have varying levels of readiness towards HL7-compliance. Furthermore, we found that adoption of standard terminologies used by EHR systems is the main gap to achieve compliance.Genomic resources can be integrated with EHR systems via the HL7 Infobutton standard using OpenInfobutton. Full compliance of genomic resources with the Infobutton standard would further enhance interoperability with EHR systems.
Citation: Heale BSE, Overby CL, Del Fiol G, Rubinstein WS, Maglott DR, Nelson TH, Milosavljevic A, Martin CL, Goehringer SR, Freimuth RR, Williams MS. Integrating genomic resources with electronic health records using the HL7 Infobutton standard.
Sex at a Crossroads: The Gender Politics of Racial Uplift and Afro-Caribbean Activism in Panama, 1918–32
Authors: Parker Jeffrey W. 
Published: August 2016

Abstract
This article explores the historical debates surrounding sexual deviancy among migrant Afro-Caribbean activists in Panama from the era of World War I until the 1930s. In addition to Panama Canal Zone records and Panamanian court records, this article utilizes a collection of West Indian newspapers published in Panama in order to trace the intersections of race, sex, labor, and class during the early twentieth century. This research highlights the central role that deviant sexuality played in articulating notions of black manliness during labor strikes on the Panama Canal led by Garveyite activists. Moreover, it highlights how Caribbean women shaped the gendered politics surrounding Pan-African activism through local courts, union halls, and newspaper columns. Their active engagement with patriarchal discourses and organizational culture influenced debates around sexual morality and racial uplift during a period of racist U.S. empire building as well as nationalistic xenophobia in Panama.
Accessing Pan-African Feminist Humanism: Unlocking the Metacolonial in the Poetry of Una Marson and Dionne Brand
Authors: Wallace Belinda Deneen 
Published: August 2016

Abstract
This essay places the poetry of Una Marson (Jamaica) in conversation with that of Dionne Brand (Trinidad and Tobago) in order to revisit and explore the importance of Pan-Africanism in the Caribbean imagination. More precisely, it examines the role of Pan-African feminist humanisms in Caribbean women’s poetry as a means to demonstrate how the creative can bring forth a different understanding and a rearticulation of subjectivity, discourse, belonging, and power beyond the rigid limitations imposed by Western epistemologies.
Study of Factors Affecting Saudi-Iranian Relations and Conflicts and Their Resulting Behavior Pattern
Authors: Alikhani Mahdi , Zakerian Mehdi 
Published: August 2016

Relations between Tehran and Riyadh as two key players and two regional powers are of great importance. Special place of the two countries has caused relations between them to be very important in the formation of regional order in the Persian Gulf, the Middle East and Mediterranean area. Different behavior patterns in their relationship have taken place from the beginning of the relationship till now. After domestic, regional and international developments in 1999, Tehran and Riyadh went from divergence to the détente, coexistence and cooperation during the presidency of Hashemi Rafsanjani and Mohammad Khatami. However, since 2005 these two great neighboring countries again entered the competition, tensions and divergences. In this descriptive study, by using library method and reviewing online available resources conducted on Saudi-Iranian relations, our purpose is to investigate what were the effective factors in shaping the relations and conflicts between Iran and Saudi Arabia before the time Saudi Arabia cut diplomatic relations with Iran over the storming of the Saudi embassy in Tehran, and what behavior pattern these factors led to? According to results we found out that <em>identical</em>, <em>geopolitical</em>, and <em>structural</em> factors were the determinant factors in creating relations and conflicts between the two countries. Identity of Iran's political system is referred to Iranian-Islamic identity, while Saudi Arabia has Arabic-Islamic identity. Their geopolitical distinctions are related to Shiite and Sunni disciplines, and in terms of structure, rapprochement with U.S. and distribution of power in the Persian Gulf region are the most important indicators. These factors formed a “competitive conflict” behavior pattern among them.
Investigating the Custody in Shiite Jurisprudence and Civil Rights in France
Authors: Nazemi Mahdi , Salehi Abbas Ali 
Published: August 2016

Custody in Islam is the procedure for child rearing, which effects his physical and material context. What kept custody of the child apart from other issues, is attention to the spiritual dimension of the child and considering the child needs. Child custody and disputes on it leads to be an important issue for parents in countries civil law. In civil rights it becomes as well as the important of religious orders and opinions of jurists, in this regard recommendations are provided on how to improve the supervision and laws of our country's children for a better life. Therefore, in this case, it is needed to examine the legal opinion regarding to the custody of the two legal systems of Iran and France. The first custody must be investigated and have priority to the custody of the father or mother. In Iranian Civil Code the right and duty of parents in custody knows some right and some homework. In French Civil Code custody of parents towards children in all areas of life for the growth, maintenance and education of children is common and conspicuous aspects of its obligatory. The exercise of the custody right is shared between parents and conditions are considered the parent with custody situations where their absence is excused. Parents under certain circumstances can have the right to self-disclaimer or leave to a third party to ask the court about the right.
DATA ASSIMILATION BY ENSEMBLE KALMAN FILTER WITH THE LORENZ EQUATIONS
Authors: Quadros Regis Sperotto de , Harter Fabrício Pereira , Buske Daniela , Pereira Larri Silveira 
Published: August 2016

Data Assimilation is a procedure to get the initial condition as accurately as possible, through the statistical combination of collected observations and a background field, usually a short-range forecast. In this research a complete assimilation system for the Lorenz equations based on Ensemble Kalman Filter is presented and examined. The Lorenz model is chosen for its simplicity in structure and the dynamic similarities with primitive equations models, such as modern numerical weather forecasting. Based on results, was concluded that, in this implementation, 10 members is the best setting, because there is an overfitting for ensembles with 50 and 100 members. It was also examined if the EnKF is effective to track the control for 20% and 40% of error in the initial conditions. The results show a disagreement between the “truth” and the estimation, especially in the end of integration period, due the chaotic nature of the system. It was also concluded that EnKF have to be performed sufficiently frequently in order to produce desirable results.
OBSERVAÇÕES SOBRE A MODULAÇÃO DA CAMADA LIMITE ATMOSFÉRICA MARINHA DEVIDA À PASSAGEM DE UM SISTEMA FRONTAL NO ATLÂNTICO SUDOESTE
Authors: Rossato Fernando , Souza Ronald Buss de 
Published: August 2016

Between 6-9 December 2012, the Oceanographic Vessel Alpha Crucis took oceanographic stations in the Southwestern Atlantic Ocean in support to both SAMOC and ACEx projects. During the research cruise, the vessel performed measurements with the release of weather balloons. From the data collected by the radiosondes, it was possible to verify the variability of the marine atmospheric boundary layer (MABL) in the area and period of study. From meteorological and oceanographic data, it was possible to estimate the latent and sensible heat fluxes from bulk parameterization. During an episode of formation of an extratropical cyclone, the results ,of this work demonstrate the impact of the synoptic conditions influencing the evolution of the MABL. During the prefrontal condition a stratification of the MABL was verified. The latent and sensible heat fluxes directed from the ocean to the atmosphere were low or negative (from the atmosphere to the ocean). During the post frontal condition, the MABL was well developed with a 1200 m height and the latent and sensible heat fluxes from the ocean to the atmosphere were more intense. These observations are fundamental to widen our understanding on the physical processes occurring at the ocean-atmosphere interface and have primary importance for the weather and climate forecast of the south-southwestern region of Brazil.
ACOPLAMENTO BRAMS-WW3 PARA PREVISÃO DE ONDAS OCEÂNICAS
Authors: Ruiz Renata Sampaio da Rocha , Maita Rosio Del Pilar Camayo , Velho Haroldo Fraga de Campos , Freitas Saulo , Innocentini Valdir 
Published: August 2016

A version of the coupled ocean waves WaveWatch III (WW3) model with mesoscale meteorological model BRAMS is presented. The WW3 is a model for waves forecasting. The BRAMS model is used for numerical weather prediction over South America, with horizontal resolution of 5 km. Both models are executed operationally by the CPTEC-INPE. The boundary conditions for the BRAMS model are provided by the global atmospheric circulation model of the CPTEC-INPE. The simulation with BRAMS for14/Oct/2014 generated a wind field with better agreement with the observations (satellite Metop-A, ASCAT sensor) to the coast of southeastern Brazil) than the field wind generated by the SFM model. The simulation with wind field generated by BRAMS produces higher waves than ones predicted with GFS wind field.
Functional Human and Murine Tissue-Engineered Liver Is Generated from Adult Stem/Progenitor Cells
Authors: Mavila Nirmala , Trecartin Andrew , Spurrier Ryan , Xiao Yi , Hou Xiaogang , James David , Fu Xiaowei , Truong Brian , Wang Clara , Lipshutz Gerald S. , Wang Kasper S. , Grikscheit Tracy C. 
Published: August 2016

Abstract
Liver disease affects large numbers of patients, yet there are limited treatments available to replace absent or ineffective cellular function of this crucial organ. Donor scarcity and the necessity for immunosuppression limit one effective therapy, orthotopic liver transplantation. But in some conditions such as inborn errors of metabolism or transient states of liver insufficiency, patients may be salvaged by providing partial quantities of functional liver tissue. After transplanting multicellular liver organoid units composed of a heterogeneous cellular population that includes adult stem and progenitor cells, both mouse and human tissue-engineered liver (TELi) form in vivo. TELi contains normal liver components such as hepatocytes with albumin expression, CK19-expressing bile ducts and vascular structures with α-smooth muscle actin expression, desmin-expressing stellate cells, and CD31-expressing endothelial cells. At 4 weeks, TELi contains proliferating albumin-expressing cells and identification of β2-microglobulin-expressing cells demonstrates that the majority of human TELi is composed of transplanted human cells. Human albumin is detected in the host mouse serum, indicating in vivo secretory function. Liquid chromatography/mass spectrometric analysis of mouse serum after debrisoquine administration is followed by a significant increase in the level of the human metabolite, 4-OH-debrisoquine, which supports the metabolic and xenobiotic capability of human TELi in vivo. Implanted TELi grew in a mouse model of inducible liver failure.
Performance of a SiC-nanowire-based explosive-emission pulsed plasma electron source
Authors: Xun Tao , Zhang Jian-de , Li Gong-yi , Zhao Xue-long , Hu Tian-jiao , Yang Han-wu 
Published: August 2016

Abstract
Large-scale, well-aligned SiC nanowires (SiCNWs) were developed and their performance as an explosive-emission cathode driven by a high-voltage pulse modulator (450 kV, 120 ns) is reported. The current density was on the order of 1.2 kA/cm2 at an electric field of 90 kV/cm. By comparison with polymer velvets, the SiCNW-based cathodes showed a larger current amplitude, a smaller ignition delay, more uniform surface plasmas, and constant diode impedances during the pulse flattop. The SiCNWs also showed a very small variation in current density in the shot-to-shot mode, which suggests an outstanding advantage in terms of cathode lifetime.
Optical constants of off-stoichiometric aluminum oxide thin film in 6–20 nm soft-X-ray/extreme ultraviolet region
Authors: Sinha Mangalika , Sharma Saurabh , Singh Amol , Modi Mohammed H. 
Published: August 2016

Abstract
In this study, the optical constants of a sputter-deposited aluminum oxide thin film are measured in the soft-X-ray wavelength region of 6–20 nm using an angle-dependent X-ray reflectivity technique at the Indus-1 synchrotron radiation source. The chemical composition of the aluminum oxide thin film is analyzed by an X-ray photoelectron spectroscopy technique. Grazing incidence X-ray reflectivity results indicate that the density of the film is lower (2.93 g·cm−3) than that of bulk alumina (3.97 g·cm−3). The experimentally obtained optical constants correlate with the film composition and density. It is found that the experimentally measured delta and beta values are 5–33% higher than the tabulated values except those near the Al L edge (17 nm) region, where the experimentally obtained beta values are 7–20% lower and the delta values are 50–120% higher. This large mismatch observed between the experimental values and Henke et al. data is attributed to the reduced film density and the presence of a mixed phase of AlO
x
and Al2O3, as evidenced by X-ray photoelectron spectroscopy.
Characterization of nanocarbon deposited on insulator substrate by alcohol chemical vapor deposition
Authors: Tsujimoto Marina , Murata Hidenobu , Tachibana Masaru 
Published: August 2016

Abstract
Single-layer-graphene-like nanocarbon materials were directly deposited on c-plane sapphire substrates by thermal chemical vapor deposition with ethanol as a carbon source. Scanning electron microscopy (SEM) images show that the deposited materials have sheetlike grains of around 100 nm diameter. Most of them have “hills” with 32 nm diameter on the grains. According to atomic force microscopy (AFM) observation, the height of the sheetlike grains is below 1 nm, which is comparable to that of single-layer graphene, while the hills have a height of several nm. Raman spectra show that the material is similar to graphitic nanocarbon, which has a strong D band. This result implies that there are a number of defects in the nanocarbon materials.
Low-temperature oxidation of 4H-SiC using oxidation catalyst SrTi1−
xMgxO3−δ
Authors: Li Li , Ikeda Akihiro , Asano Tanemasa 
Published: August 2016

Abstract
A thermal oxidation method with SrTi1−

x
Mg
x
O3−δ used as an oxidation catalyst is proposed to oxidize the 4H-SiC surface at low temperatures. The rate constant for the interfacial reaction of the 4H-SiC(0001) Si-face at 800 °C is enhanced by approximately two orders of magnitude from that of conventional dry oxidation. The method enables the production of a gate SiO2 layer of a MOSFET at temperatures below 900 °C. Electrical characterization of the MOS interface suggests that the catalytic oxidation produces similar interface state densities to those produced by conventional dry oxidation in the energy range of 0.2–0.5 eV from the conduction band edge at 1300 °C.
Psychological distress of residents in Kawauchi village, Fukushima Prefecture after the accident at Fukushima Daiichi Nuclear Power Station: the Fukushima Health Management Survey
Authors: Yoshida Koji , Shinkawa Tetsuko , Urata Hideko , Nakashima Kanami , Orita Makiko , Yasui Kiyotaka , Kumagai Atsushi , Ohtsuru Akira , Yabe Hirooki , Maeda Masaharu , Hayashida Naomi , Kudo Takashi , Yamashita Shunichi , Takamura Noboru 
Published: August 2016

BackgroundTo shed light on the mental health of evacuees after the accident at Fukushima Daiichi Nuclear Power Station (FDNPS), we evaluate the results of the Fukushima Health Management Survey (FHMS) of the residents at Kawauchi village in Fukushima, which is located less than 30 km from the FDNPS.MethodsWe conducted the cross-sectional study within the framework of the FHMS. Exposure values were “anorexia,” “subjective feelings about health,” “feelings about sleep satisfaction,” and “bereavement caused by the disaster,” confounding variables were “age” and “sex,” and outcome variables were “K6 points.” We collected data from the FHMS, and employed the Kessler Psychological Distress Scale (K6) and the posttraumatic stress disorder (PTSD) Checklist Stressor-Specific Version (PCL-S) to carry out the research. A total of 13 or greater was the cut-off for identifying serious mental illness using the K6 scale. The study subjects included residents (n = 542) of over 30 years of age from Kawauchi village, and data were used from the period of January 1, 2012 to October 31, 2012.ResultsA total of 474 residents (87.5%) scored less than 13 points in the K6 and 68 (12.6%) scored 13 points or more. The proportion of elderly residents (over 65 years old) among people with K6 score above the cut-off was higher than that among people with K6 score below the cut-off (44.1 vs 31.0%, p < 0.05). In addition, the proportion of residents with anorexia and mental illness among people with K6 score above the cut-off was higher than among people with K6 score below the cut-off (p < 0.001 and p < 0.05, respectively). The amount of residents who scored 44 points or more in the PCL-S among people with K6 score above the cut-off was also considerably higher than among people with K6 score below the cut-off (79.4 vs 12.9%, p < 0.001). Interestingly, the proportion of residents who scored more than among people with K6 score above the cut-off and the among people with PCL-S score above the cut-off in Kawauchi was higher than in previous studies in other locations.ConclusionsThese results suggest that there are severe mental health problems, such as depression and PTSD, among adults as a consequence of the accident at the FDNPS. Our study showed that residents who lived in the evacuation zone before the disaster are at high risk psychological distress. To facilitate local residents’ recovery from Fukushima, there is a need to continue providing them with physical and mental support, as well as communication regarding the health risks of radiation.
Knowledge of blood loss at delivery among postpartum patients
Authors: Farber Michaela K. , Miller Claire M. , Ramachandran Bharathi , Hegde Priya , Akbar Kulsum , Goodnough Lawrence Tim , Butwick Alexander J. 
Published: August 2016

BackgroundPostpartum hemorrhage (PPH) is a leading cause of obstetric morbidity. There is limited understanding of patients’ knowledge about blood loss at delivery, PPH, and PPH-related morbidities, including transfusion and anemia.MethodsWe surveyed 100 healthy postpartum patients who underwent vaginal or cesarean delivery about blood loss, and whether they received information about transfusion and peripartum hemoglobin (Hb) testing. Responses were compared between women undergoing vaginal delivery vs. cesarean delivery;P< 0.05 considered as statistically significant.ResultsIn our cohort, 49 women underwent vaginal delivery and 51 women underwent cesarean delivery. Only 29 (29%) of women provided blood loss estimates for their delivery. Women who underwent cesarean delivery were more likely to receive clear information about transfusion therapy than those undergoing vaginal delivery (43.1% vs. 20.4% respectively;P= 0.04). Women who underwent vaginal delivery were more likely to receive results of postpartum Hb tests compared to those undergoing cesarean delivery (49% vs. 29.4%;P= 0.02).ConclusionOur findings suggest that women are poorly informed about the magnitude of blood loss at delivery. Hematologic information given to patients varies according to mode of delivery. Further research is needed to better understand the clinical implications of patients’ knowledge gaps about PPH, transfusion and postpartum anemia.
Aquatic insects dealing with dehydration: do desiccation resistance traits differ in species with contrasting habitat preferences?
Authors: Pallarés Susana , Velasco Josefa , Millán Andrés , Bilton David T. , Arribas Paula 
Published: August 2016

BackgroundDesiccation resistance shapes the distribution of terrestrial insects at multiple spatial scales. However, responses to drying stress have been poorly studied in aquatic groups, despite their potential role in constraining their distribution and diversification, particularly in arid and semi-arid regions.MethodsWe examined desiccation resistance in adults of four congeneric water beetle species (Enochrus, family Hydrophilidae) with contrasting habitat specificity (lenticvs.lotic systems and different salinity optima from fresh- to hypersaline waters). We measured survival, recovery capacity and key traits related to desiccation resistance (fresh mass, % water content, % cuticle content and water loss rate) under controlled exposure to desiccation, and explored their variability within and between species.ResultsMeso- and hypersaline species were more resistant to desiccation than freshwater and hyposaline ones, showing significantly lower water loss rates and higher water content. No clear patterns in desiccation resistance traits were observed between lotic and lentic species. Intraspecifically, water loss rate was positively related to specimens’ initial % water content, but not to fresh mass or % cuticle content, suggesting that the dynamic mechanism controlling water loss is mainly regulated by the amount of body water available.DiscussionOur results support previous hypotheses suggesting that the evolution of desiccation resistance is associated with the colonization of saline habitats by aquatic beetles. The interespecific patterns observed inEnochrusalso suggest that freshwater species may be more vulnerable than saline ones to drought intensification expected under climate change in semi-arid regions such as the Mediterranean Basin.