bluuebunny/crossref_metadata_2025_split huggingface dataset:
Observation of Dirac-like energy band and ring-torus Fermi surface associated with the nodal line in topological insulator CaAgAs
Authors: Takane Daichi , Nakayama Kosuke , Souma Seigo , Wada Taichi , Okamoto Yoshihiko , Takenaka Koshi , Yamakawa Youichi , Yamakage Ai , Mitsuhashi Taichi , Horiba Koji , Kumigashira Hiroshi , Takahashi Takashi , Sato Takafumi 
Published: January 2018

AbstractOne of key challenges in current material research is to search for new topological materials with inverted bulk-band structure. In topological insulators, the band inversion caused by strong spin–orbit coupling leads to opening of a band gap in the entire Brillouin zone, whereas an additional crystal symmetry such as point-group and nonsymmorphic symmetries sometimes prohibits the gap opening at/on specific points or line in momentum space, giving rise to topological semimetals. Despite many theoretical predictions of topological insulators/semimetals associated with such crystal symmetries, the experimental realization is still relatively scarce. Here, using angle-resolved photoemission spectroscopy with bulk-sensitive soft-x-ray photons, we experimentally demonstrate that hexagonal pnictide CaAgAs belongs to a new family of topological insulators characterized by the inverted band structure and the mirror reflection symmetry of crystal. We have established the bulk valence-band structure in three-dimensional Brillouin zone, and observed the Dirac-like energy band and ring-torus Fermi surface associated with the line node, where bulk valence and conducting bands cross on a line in the momentum space under negligible spin–orbit coupling. Intriguingly, we found that no other bands cross the Fermi level and therefore the low-energy excitations are solely characterized by the Dirac-like band. CaAgAs provides an excellent platform to study the interplay among low-energy electron dynamics, crystal symmetry, and exotic topological properties.
Conservation of pattern as a tool for inference on spatial snapshots in ecological data
Authors: Irvine Michael A. , Bull James C. , Keeling Matt J. 
Published: January 2018

AbstractAs climate change and other anthropogenic factors increase the uncertainty of vegetation ecosystem persistence, the ability to rapidly assess their dynamics is paramount. Vegetation and sessile communities form a variety of striking regular spatial patterns such as stripes, spots and labyrinths, that have been used as indicators of ecosystem current state, through qualitative analysis of simple models. Here we describe a new method for rigorous quantitative estimation of biological parameters from a single spatial snapshot. We formulate a synthetic likelihood through consideration of the expected change in the correlation structure of the spatial pattern. This then allows Bayesian inference to be performed on the model parameters, which includes providing parameter uncertainty. The method was validated against simulated data and then applied to real data in the form of aerial photographs of seagrass banding. The inferred parameters were found to be able to reproduce similar patterns to those observed and able to detect strength of spatial competition, competition-induced mortality and the local range of reproduction. This technique points to a way of performing rapid inference of spatial competition and ecological stability from a single spatial snapshots of sessile communities.
Selective targeting of Scn8a prevents seizure development in a mouse model of mesial temporal lobe epilepsy
Authors: Wong Jennifer C. , Makinson Christopher D. , Lamar Tyra , Cheng Qi , Wingard Jeffrey C. , Terwilliger Ernest F. , Escayg Andrew 
Published: January 2018

AbstractWe previously found that genetic mutants with reduced expression or activity of Scn8a are resistant to induced seizures and that co-segregation of a mutant Scn8a allele can increase survival and seizure resistance of Scn1a mutant mice. In contrast, Scn8a expression is increased in the hippocampus following status epilepticus and amygdala kindling. These findings point to Scn8a as a promising therapeutic target for epilepsy and raise the possibility that aberrant overexpression of Scn8a in limbic structures may contribute to some epilepsies, including temporal lobe epilepsy. Using a small-hairpin-interfering RNA directed against the Scn8a gene, we selectively reduced Scn8a expression in the hippocampus of the intrahippocampal kainic acid (KA) mouse model of mesial temporal lobe epilepsy. We found that Scn8a knockdown prevented the development of spontaneous seizures in 9/10 mice, ameliorated KA-induced hyperactivity, and reduced reactive gliosis. These results support the potential of selectively targeting Scn8a for the treatment of refractory epilepsy.
Roles of sliding-induced defects and dissociated water molecules on low friction of graphene
Authors: Yang Zaixiu , Bhowmick Sukanta , Sen Fatih G. , Banerji Anindya , Alpas Ahmet T. 
Published: January 2018

AbstractSliding contact experiments and first-principles calculations were performed to elucidate the roles of structural defects and water dissociative adsorption process on the tribo-chemical mechanisms responsible for low friction of graphene. Sliding friction tests conducted in ambient air and under a dry N2 atmosphere showed that in both cases a high running-in coefficient of friction (COF) occurred initially but a low steady-state COF was reached only when the sliding was continued in air with moisture. Density functional theory (DFT) calculations indicated that the energy barrier (E
b
) for dissociative adsorption of H2O was significantly lower in case of reconstructed graphene with a monovacancy compared to pristine graphene. Cross-sectional transmission electron microscopy of graphene transferred to the counterface revealed a partly amorphous structure incorporating damaged graphene layers with d-spacings larger than that of the original layers. DFT calculations on the reconstructed bilayer AB graphene systems revealed an increase of d-spacing due to the chemisorption of H, O, and OH at the vacancy sites and a reduction in the interlayer binding energy (E
B
) between the bilayer graphene interfaces compared to pristine graphene. Thus, sliding induced defects facilitated dissociative adsorption of water molecules and reduced COF of graphene for sliding tests under ambient and humid environments but not under an inert atmosphere.
Synchrotron-generated microbeams induce hippocampal transections in rats
Authors: Fardone Erminia , Pouyatos Benoît , Bräuer-Krisch Elke , Bartzsch Stefan , Mathieu Hervè , Requardt Herwig , Bucci Domenico , Barbone Giacomo , Coan Paola , Battaglia Giuseppe , Le Duc Geraldine , Bravin Alberto , Romanelli Pantaleo 
Published: January 2018

AbstractSynchrotron-generated microplanar beams (microbeams) provide the most stereo-selective irradiation modality known today. This novel irradiation modality has been shown to control seizures originating from eloquent cortex causing no neurological deficit in experimental animals. To test the hypothesis that application of microbeams in the hippocampus, the most common source of refractory seizures, is safe and does not induce severe side effects, we used microbeams to induce transections to the hippocampus of healthy rats. An array of parallel microbeams carrying an incident dose of 600 Gy was delivered to the rat hippocampus. Immunohistochemistry of phosphorylated γ-H2AX showed cell death along the microbeam irradiation paths in rats 48 hours after irradiation. No evident behavioral or neurological deficits were observed during the 3-month period of observation. MR imaging showed no signs of radio-induced edema or radionecrosis 3 months after irradiation. Histological analysis showed a very well preserved hippocampal cytoarchitecture and confirmed the presence of clear-cut microscopic transections across the hippocampus. These data support the use of synchrotron-generated microbeams as a novel tool to slice the hippocampus of living rats in a minimally invasive way, providing (i) a novel experimental model to study hippocampal function and (ii) a new treatment tool for patients affected by refractory epilepsy induced by mesial temporal sclerosis.
Sediment Source Fingerprinting of the Lake Urmia Sand Dunes
Authors: Ahmady-Birgani Hesam , Agahi Edris , Ahmadi Seyed Javad , Erfanian Mahdi 
Published: January 2018

AbstractAeolian sand dunes are continuously being discovered in inner dry lands and coastal areas, most of which have been formed over the Last Glacial Maximum. Presently, due to some natural and anthropogenic implications on earth, newly-born sand dunes are quickly emerging. Lake Urmia, the world’s second largest permanent hypersaline lake, has started shrinking, vast lands comprising sand dunes over the western shore of the lake have appeared and one question has been playing on the minds of nearby dwellers: where are these sand dunes coming from, What there was not 15 years ago!! In the present study, the determination of the source of the Lake Urmia sand dunes in terms of the quantifying relative contribution of each upstream geomorphological/lithological unit has been performed using geochemical fingerprinting techniques. The findings demonstrate that the alluvial and the fluvial sediments of the western upstream catchment have been transported by water erosion and they accumulated in the lower reaches of the Kahriz River. Wind erosion, as a secondary agent, have carried the aeolian sand-sized sediments to the sand dune area. Hence, the Lake Urmia sand dunes have been originating from simultaneous and joint actions of alluvial, fluvial and aeolian processes.
A Quantum Biomimetic Electronic Nose Sensor
Authors: Patil Ashlesha , Saha Dipankar , Ganguly Swaroop 
Published: January 2018

AbstractWe propose a technologically feasible one-dimensional double barrier resonant tunneling diode (RTD) as electronic nose, inspired by the vibration theory of biological olfaction. The working principle is phonon-assisted inelastic electron tunneling spectroscopy (IETS), modeled here using the Non-Equilibrium Green Function formalism for quantum transport. While standard IETS requires low-temperature operation to obviate the thermal broadening of spectroscopic peaks, we show that quantum confinement in the well of the RTD provides electron energy filtering in this case and could thereby allow room-temperature operation. We also find that the IETS peaks - corresponding to adsorbed foreign molecules - shift monotonically along the bias voltage coordinate with their vibrational energy, promising a selective sensor.
Haplotype-based Noninvasive Prenatal Diagnosis of Hyperphenylalaninemia through Targeted Sequencing of Maternal Plasma
Authors: Ye Jun , Chen Chao , Yuan Yuan , Han Lianshu , Wang Yaoshen , Qiu Wenjuan , Zhang Huiwen , Asan  , Gu Xuefan 
Published: January 2018

AbstractHere we developed a haplotype-based noninvasive prenatal diagnosis method for hyperphenylalaninemia (HPA) and demonstrated its accuracy and feasibility during early pregnancy. Capture sequencing was performed on genomic DNA from parents and probands using customized hybridization probes targeting highly heterozygous single-nucleotide polymorphisms located within the 1 M region flanking phenylalanine hydroxylase (PAH) and 6-pyruvoyltetrahydropterin (PTS) and its coding region to determine the parental haplotypes and linkage to pathogenic mutations. Maternal plasma DNA obtained at 12–20 weeks of gestation was also subjected to targeted sequencing to deduce the fetal haplotypes based on the parental haplotypes. The fetal genotypes were further validated by invasive prenatal diagnosis. Haplotype-based noninvasive prenatal testing was successfully performed in 13 families. Five fetuses were identified to harbor bi-allelic pathogenic variants of PAH, four fetuses were carriers of one heterozygous PAH variant, three fetuses were normal, and the fetus of the 6-pyruvoyl tetrahydrobiopterin synthase family was identified as normal. The fetal genotypes at two gestational weeks from the same PAH family were identical. All results were consistent with the prenatal diagnosis based on amniotic fluid. Haplotype-based noninvasive prenatal testing for HPA through targeted sequencing is accurate and feasible during early gestation.
Piperonylic acid stimulates keratinocyte growth and survival by activating epidermal growth factor receptor (EGFR)
Authors: Lee Dohyun , Lim Jinsun , Woo Kyung-Chul , Kim Kyong-Tai 
Published: January 2018

AbstractEpidermal growth factor (EGF) stimulates cell growth, proliferation, and survival. The biological benefits of EGF have been utilized in medical uses for improving wound healing as well as in today’s skin cosmetics. EGF has been found in urine, saliva, milk, and plasma, but its efficient isolation remains a difficult task. With technical advances, recombinant protein purification technique has been used for EGF production. However, the recombinant EGF is still expensive and keeping it with stable activity is difficult to be used widely. Thus, a molecule that can mimic the EGF activity would be a useful alternative of EGF. Herein, we have discovered that a natural small molecule piperonylic acid shows EGF-like activity in HaCaT keratinocytes. Piperonylic acid induced EGF receptor (EGFR) activation and resulted in serial activation of the downstream modulators. The activated signaling pathway eventually up-regulated gene expression of egr-1, c-fos, c-jun, and c-myc, which are involved in cell growth and survival. Moreover, piperonylic acid showed promoting role in keratinocyte growth and survival from UVB-induced cellular damages. This study has revealed the EGF-like activity of piperonylic acid and proposed that the piperonylic acid could be a promising component for skin wound healing agents or cosmetic ingredient.
Exome-wide rare variant analyses of two bone mineral density phenotypes: the challenges of analyzing rare genetic variation
Authors: Sun Jianping , Oualkacha Karim , Forgetta Vincenzo , Zheng Hou-Feng , Richards J. Brent , Evans Daniel S. , Orwoll Eric , Greenwood Celia M. T. 
Published: January 2018

AbstractPerformance of a recently developed test for association between multivariate phenotypes and sets of genetic variants (MURAT) is demonstrated using measures of bone mineral density (BMD). By combining individual-level whole genome sequenced data from the UK10K study, and imputed genome-wide genetic data on individuals from the Study of Osteoporotic Fractures (SOF) and the Osteoporotic Fractures in Men Study (MrOS), a data set of 8810 individuals was assembled; tests of association were performed between autosomal gene-sets of genetic variants and BMD measured at lumbar spine and femoral neck. Distributions of p-values obtained from analyses of a single BMD phenotype are compared to those from the multivariate tests, across several region definitions and variant weightings. There is evidence of increased power with the multivariate test, although no new loci for BMD were identified. Among 17 genes highlighted either because there were significant p-values in region-based association tests or because they were in well-known BMD genes, 4 windows in 2 genes as well as 6 single SNPs in one of these genes showed association at genome-wide significant thresholds with the multivariate phenotype test but not with the single-phenotype test, Sequence Kernel Association Test (SKAT).
Past visual experiences weigh in on body size estimation
Authors: Alexi Joanna , Cleary Dominique , Dommisse Kendra , Palermo Romina , Kloth Nadine , Burr David , Bell Jason 
Published: January 2018

AbstractBody size is a salient marker of physical health, with extremes implicated in various mental and physical health issues. It is therefore important to understand the mechanisms of perception of body size of self and others. We report a novel technique we term the bodyline, based on the numberline technique in numerosity studies. One hundred and three young women judged the size of sequentially presented female body images by positioning a marker on a line, delineated with images of extreme sizes. Participants performed this task easily and well, with average standard deviations less than 6% of the total scale. Critically, judgments of size were biased towards the previously viewed body, demonstrating that serial dependencies occur in the judgment of body size. The magnitude of serial dependence was well predicted by a simple Kalman-filter ideal-observer model, suggesting that serial dependence occurs in an optimal, adaptive way to improve performance in size judgments.
Precontractile optical response during excitation-contraction in human muscle revealed by non-invasive high-speed spatiotemporal NIR measurement
Authors: Lindkvist Markus , Granåsen Gabriel , Grönlund Christer 
Published: January 2018

AbstractDuring muscle contraction the excitation-contraction process mediates the neural input and mechanical output. Proper muscle function and body locomotion depends on the status of the elements in the same process. However, non-invasive and in-vivo methods to study this are not available. Here we show the existence of an optical response occurring during the excitation-contraction process in human biceps brachii muscle. We developed a non-invasive instrument from a photodiode array and light emitting diodes to detect spatially propagating (~5 m/s) and precontractile (~6 ms onset) optical signals closely related to the action potential during electrostimulation. Although this phenomenon was observed 60 years ago on isolated frog muscle cells in the lab, it has not been shown in-vivo before now. We anticipate our results to be a starting point for a new category in-vivo studies, characterising alterations in the excitation-contraction process in patients with neuromuscular disease and to monitor effects of therapy.
Renal capsular invasion is a prognostic biomarker in localized clear cell renal cell carcinoma
Authors: Ha U-Syn , Lee Kyu Won , Jung Jin-hyung , Byun Seok-Soo , Kwak Cheol , Chung Jinsoo , Hwang Eu Chang , Kim Yong-June , Kwon Tae Gyun , Kang Seok Ho , Hong Sung-Hoo 
Published: January 2018

AbstractRenal capsular invasion (RCI) and lymphovascular invasion (LVI) are potential prognostic factors of significance in renal cell carcinoma (RCC). We evaluated the independent prognostic implications of RCI and LVI in localized clear cell RCC based on a large multi-institutional cohort. 6, 849 patients who had undergone radical or partial nephrectomy for RCC were included. Associations between recurrence and RCI or LVI were analyzed by constructing statistical models that combined Cox proportional hazard regression and propensity score matching. To analyze RCI, 2, 733 patients including 603 patients with RCI were enrolled. To analyze LVI, 3, 586 patients including 121 patients with LVI were enrolled. Recurrence was observed in 75 (12.4%) patients with RCI and 134 (6.3%) patients without RCI. In all statistical models, RCI was significantly associated with an increased risk of recurrence. Recurrence was observed 29 (24.0%) patients with LVI and 207 (6.0%) patients without LVI. LVI was significantly associated with an increased risk of recurrence only in non-adjusted univariate models, but not in multivariate adjusted analysis or propensity score matching models. In conclusion, these findings suggest that RCI could be a significant risk factor for localized clear cell RCC recurrence. In contrast to RCI, LVI cannot be an independent prognostic variable.
Pneumolysin induced mitochondrial dysfunction leads to release of mitochondrial DNA
Authors: Nerlich Andreas , Mieth Maren , Letsiou Eleftheria , Fatykhova Diana , Zscheppang Katja , Imai-Matsushima Aki , Meyer Thomas F. , Paasch Lisa , Mitchell Timothy J. , Tönnies Mario , Bauer Torsten T. , Schneider Paul , Neudecker Jens , Rückert Jens C. , Eggeling Stephan , Schimek Maria , Witzenrath Martin , Suttorp Norbert , Hippenstiel Stefan , Hocke Andreas C. 
Published: January 2018

AbstractStreptococcus pneumoniae (S.pn.) is the most common bacterial pathogen causing community acquired pneumonia. The pore-forming toxin pneumolysin (PLY) is the major virulence factor of S.pn. and supposed to affect alveolar epithelial cells thereby activating the immune system by liberation of danger-associated molecular patterns (DAMP). To test this hypothesis, we established a novel live-cell imaging based assay to analyse mitochondrial function and associated release of mitochondrial DNA (mtDNA) as DAMP in real-time. We first revealed that bacterially released PLY caused significant changes of the cellular ATP homeostasis and led to morphologic alterations of mitochondria in human alveolar epithelial cells in vitro and, by use of spectral live-tissue imaging, in human alveoli. This was accompanied by strong mitochondrial calcium influx and loss of mitochondrial membrane potential resulting in opening of the mitochondrial permeability transition pore and mtDNA release without activation of intrinsic apoptosis. Moreover, our data indicate cellular mtDNA liberation via microvesicles, which may contribute to S.pn. related pro-inflammatory immune activation in the human alveolar compartment.
A role for divalent metal transporter (DMT1) in mitochondrial uptake of iron and manganese
Authors: Wolff Natascha A. , Garrick Michael D. , Zhao Lin , Garrick Laura M. , Ghio Andrew J. , Thévenod Frank 
Published: January 2018

AbstractMuch of iron and manganese metabolism occurs in mitochondria. Uptake of redox-active iron must be tightly controlled, but little is known about how metal ions enter mitochondria. Recently, we established that the divalent metal transporter 1 (DMT1) is present in the outer mitochondrial membrane (OMM). Therefore we asked if it mediates Fe2+ and Mn2+ influx. Mitochondria were isolated from HEK293 cells permanently transfected with inducible rat DMT1 isoform 1 A/+IRE (HEK293-rDMT1). Fe2+-induced quenching of the dye PhenGreen™SK (PGSK) occurred in two phases, one of which reflected OMM DMT1 with stronger Fe2+ uptake after DMT1 overexpression. DMT1-specific quenching showed an apparent affinity of ~1.5 µM for Fe2+and was blocked by the DMT1 inhibitor CISMBI. Fe2+ influx reflected an imposed proton gradient, a response that was also observed in purified rat kidney cortex (rKC) mitochondria. Non-heme Fe accumulation assayed by ICPOES and stable 57Fe isotope incorporation by ICPMS were increased in HEK293-rDMT1 mitochondria. HEK293-rDMT1 mitochondria displayed higher 59Fe2+ and 54Mn2+ uptake relative to controls with 54Mn2+ uptake blocked by the DMT1 inhibitor XEN602. Such transport was defective in rKC mitochondria with the Belgrade (G185R) mutation. Thus, these results support a role for DMT1 in mitochondrial Fe2+ and Mn2+ acquisition.
A direct effect of perception on action when grasping a cup
Authors: Rounis E. , van Polanen V. , Davare M. 
Published: January 2018

AbstractAffordances represent features of an object that trigger specific actions. Here we tested whether the presence and orientation of a handle on a cup could bias grasping movements towards it in conditions where subjects were explicitly told to ignore the handle. We quantified the grip aperture profile of twelve healthy participants instructed to grasp a cup from its body while it either had no handle, a handle pointing towards, or away from the grasping hand (3 ‘move’ conditions, with large grip aperture). To ensure the smaller grip aperture afforded by the handle was implicitly processed, we interspersed trials in which participants had to grasp the cup from its handle or a handle not attached to a cup with a small grip aperture. We found that grip aperture was smaller in the presence of a handle in the ‘move’ conditions, independently of its orientation. Our finding, of an effect of the handle during the execution of a grasp action, extends previous evidence of such an influence measured during motor preparation using simple reaction times. It suggests that the specific action elicited by an object’s attribute can affect movement performance in a sustained manner throughout movement execution.