bluuebunny/crossref_metadata_2025_split huggingface dataset:
Relationship between seed desiccation sensitivity, seed water content at maturity and climatic characteristics of native environments of nineCoffeaL. species
Authors: Dussert Stéphane , Chabrillange Nathalie , Engelmann Florent , Anthony François , Louarn Jacques , Hamon Serge 
Published: May 2017

AbstractA broad variability for seed desiccation sensitivity, as quantified by the water content and the water activity at which half of the initial viability is lost, has been previously observed within nine African coffee species. In order to investigate if these different degrees of desiccation sensitivity correspond to an adaptive trait, additional data, such as the duration of seed development and seed water content at maturity, were measured for these species, and the relationships between these parameters and some climatic characteristics of their specific native environments were investigated. Since flowering in all coffee species occurs only a few days after the main rainfall marking the end of the dry season, simulations could be made, based on the continuous sequences of rainfall data compiled in databases of nine climatic stations, chosen for their appropriate location in the collecting areas. The simulations revealed a highly significant correlation between the duration of seed development and that of the wet season. Consequently, mature seeds are shed at the beginning of the following dry season. Moreover, the mean number of dry months that seeds have to withstand after shedding was significantly correlated with the parameters used to quantify seed desiccation sensitivity. By contrast, seed moisture content at maturity was not correlated with the level of seed desiccation tolerance. All these results are discussed on the basis of more detailed descriptions of the natural habitats of the coffee species studied.
The influence of diet on the development of swine dysentery upno experimental infection
Authors: Lindecrona R.H. , Jensen T.K. , Jensen B.B. , Leser T.D. , Jiufeng W. , Møller K. 
Published: May 2017

AbstractThe purpose of the present study was to evaluate the effect of fermented liquid food (FLF) and the addition of lactic acid to a diet based on wheat and barley on the development of swine dysentery in pigs experimentally infected with a Danish field isolate of Brachyspira hyodysenteriae. Furthermore, to confirm if low non-starch polysaccharide (NSP)-containing diets reduce swine dysentery the effect of different dietary levels of NSP and resistant starch (RS) was evaluated. These diets were based on cooked rice and animal protein, cooked rice and potato starch, cooked rice and wheat bran, or cooked rice and sugar-beet pulp. The experiment was designed as a randomized-block trial and was performed in triplicate including a total of 192 pigs. After feeding the diets for 2 weeks, six pigs in each group were challenged orally with B. hyodysenteriae and observed for another 4 weeks. After challenge, swine dysentery was observed in all feeding groups. The incidence of disease varied between 94% (rice/wheat bran) and 44% (FLF). The effect of diet on faecal shedding of B. hyodysenteriae was statistically significant (P < 0·05). Feeding a diet based on cooked rice with a low content of NSP and RS, did not prevent the development of swine dysentery upon experimental challenge, and increasing the level of NSP or RS did not result in a higher incidence of disease or faecal shedding of B. hyodysenteriae. The incidence of swine dysentery in the FLF group was significantly lower (P < 0·05) compared with all other feeding groups, except for the lactic acid group. In conclusion, a low level of NSP or RS in the diet did not prevent the development of swine dysentery. Furthermore, the lowest incidence of disease was observed in the FLF group, even though this diet has a high content of NSP. The addition of organic acids to the food was not able to reduce infection with B. hyodysenteriae.
Selection in the presence of a genotype by environment interaction: response in environmental sensitivity
Authors: Kolmodin R. , Strandberg E. , Jorjani H. , Danell B. 
Published: May 2017

AbstractThe effect of selection for high phenotypic value in the presence of a genotype by environment interaction (G ✕ E, i.e. genetic variation for environmental sensitivity) and an improving environment was studied in a simulation. Environmental sensitivity was evaluated by using reaction norms, which describe the phenotype expressed by a genotype as a function of the environment. Three types of reaction norms (linear, quadratic and sigmoid), and two selection schemes (mass selection and progeny test selection) were studied. Environmental sensitivity was measured as the weighted average of the absolute value of the first derivative of the reaction norm function. Results showed that environmental sensitivity increased in response to selection for high phenotypic value in the presence of G ✕ E and an improving environment when reaction norms were linear or quadratic. For sigmoid reaction norms, approximating threshold characters, environmental sensitivity increased within the environmental range encompassing the threshold. With mass selection and/or non-linear reaction norms, environmental sensitivity increased even without environmental change.
Using molasses as an alternative to controlled release devices for administering n-alkane markers to cattle
Authors: Hendricksen R. E. , Gazzola C. , Reich M. M. , Roberton R. F. , Reid D. J. , Hill R. A. 
Published: May 2017

AbstractAn experiment was conducted to determine if molasses could be successfully used to administer dotriacontane (C32) and hexatriacontane (C36) n-alkane markers to steers and to compare this method with a commercially available intra-ruminal controlled release device (CRD).
The experiment was conducted over two similar periods (runs) using 24 Brahman crossbred steers in each run to study the effect of marker delivery methods and tropical grass hay diets in a randomized complete block design with three replicates. All steers were housed individually in partially covered pens, received one of two buffel-grass hays (B20: 20-week regrowth; 0·72 g nitrogen (N) per 100 g and B8: 8-week regrowth; 1·11 g N per 100 g) and one of four marker delivery treatments (control: no marker; 200 mg/day of C32 and C36 n-alkanes from a CRD or offered three times (Ms ✕ 3) or five times (Ms ✕ 5) a day in molasses).
Voluntary intake (VI) and dry matter digestibility (DMD) for diets differed (P < 0·001) with B8 greater than B20. There was no difference among marker treatments for VI but the control treatment had greater, unexplained and possibly spurious, DMD than the Ms ✕ 3 marker treatment. Although the recovery of n-alkanes was variable (0·84 to 1·05) adjacent odd- and even-chain n-alkanes were similar with no differences (P > 0·05) due to marker treatment or diet. The CRD supplied a consistent marker dose between 6 and 18 days after insertion.
Deviation from the 24-h mean faecal concentration seldom varied more than 0·03 for the individual markers and 0·05 for C31/C32 and C33/C32 ratios for all treatments. Over all the n-alkanes studied, the between-day variation was less than the within-day variation. For instance, the average of subsamples taken at 06:00 h and 18:00 h was within proportionately 0·05 of the 10-day mean concentration for 0·38 and 0·25 of records for C32 and C36 markers, respectively.
It was concluded that molasses containing C32 and C36 n-alkane markers and given either three or five times daily was as accurate as the commercial CRD in administering n-alkane markers to steers and provides a method of delivering n-alkanes over an extended period in grazing studies.
The effect of clover silages on long chain fatty acid rumen transformations and digestion in beef steers
Authors: Lee M. R. F. , Harris L. J. , Dewhurst R. J. , Merry R. J. , Scollan N. D. 
Published: May 2017

AbstractTen Hereford ✕ Friesian steers prepared with rumen, duodenal and ileal cannulae were offered ad libitum access to either grass (G), white clover (W) or red clover (R) silage or mixtures of the grass silage with the clover silages (GW and GR; 60: 40 dry matter (DM) basis). The experiment was conducted as a two-period change-over design within each clover treatment, with grass silage as an experimental control. The clover silages had higher concentrations of DM, nitrogen (N), and total fatty acids and lower concentrations of fibre (P < 0·05) than the grass silage. Rumen fermentation characteristics were similar between treatments apart from a slight elevation of n-butyric acid levels with white clover silage diets (P < 0·05). Duodenal flows of DM, organic matter (OM), total and microbial nitrogen (MN) were significantly higher (P < 0·05) with the white clover silage treatments compared with the grass silage diet. However there were no significant differences in the efficiency of microbial protein synthesis with a mean value of 27·1 g MN per kg OM apparently digested in the rumen. Duodenal flows of total fatty acids per unit intake were not significantly different, although there was a trend (P < 0·1) for increased flows with the white clover silage diets. Duodenal flows of cis-vaccenic acid (P < 0·01), linoleic acid (P < 0·05), α-linolenic acid (P < 0·05) and cis-9 trans-11 conjugated linoleic acid (CLA) (P < 0·05) were higher for the clover silages, particularly white clover silage. The increased flows of α-linolenic and linoleic acids remained significant after correcting for differences in DM intake. Biohydrogenation of linoleic (mean = 0·83) and α-linolenic (mean = 0·86) acids was extensive for all diets but the latter was significantly lower (P < 0·01) for the diets based on red clover silage. These results suggest potential for modifying the fatty acid composition of ruminant products by feeding clover silages.
In situ light responses of the proteorhodopsin-bearing Antarctic sea-ice bacterium, Psychroflexus torques
Authors: Burr David J , Martin Andrew , Maas Elizabeth W , Ryan Ken G 
Published: May 2017

Abstract
Proteorhodopsin (PR) is a wide-spread protein found in many marine prokaryotes. PR allows for the potential conversion of solar energy to ATP, possibly assisting in cellular growth and survival during periods of high environmental stress. PR utilises either blue or green light through a single amino acid substitution. We incubated the PR-bearing bacterium Psychroflexus torquis 50 cm deep within Antarctic sea ice for 13 days, exposing cultures to diurnal fluctuations in light and temperature. Enhanced growth occurred most prominently in cultures incubated under irradiance levels of ∼50 μmol photons m−2 s−1, suggesting PR provides a strong selective advantage. In addition, cultures grown under blue light yielded over 5.5 times more live cells per photon compared to green-light incubations. Because P. torquis expresses an apparently ‘green-shifted’ PR gene variant, this finding infers that the spectral tuning of PR is more complex than previously thought. This study supports the theory that PR provides additional energy to bacteria under sub-optimal conditions, and raises several points of interest to be addressed by future research.
Succession in the petroleum reservoir microbiome through an oil field production lifecycle
Authors: Vigneron Adrien , Alsop Eric B , Lomans Bartholomeus P , Kyrpides Nikos C , Head Ian M , Tsesmetzis Nicolas 
Published: May 2017

Abstract
Subsurface petroleum reservoirs are an important component of the deep biosphere where indigenous microorganisms live under extreme conditions and in isolation from the Earth’s surface for millions of years. However, unlike the bulk of the deep biosphere, the petroleum reservoir deep biosphere is subject to extreme anthropogenic perturbation, with the introduction of new electron acceptors, donors and exogenous microbes during oil exploration and production. Despite the fundamental and practical significance of this perturbation, there has never been a systematic evaluation of the ecological changes that occur over the production lifetime of an active offshore petroleum production system. Analysis of the entire Halfdan oil field in the North Sea (32 producing wells in production for 1–15 years) using quantitative PCR, multigenic sequencing, comparative metagenomic and genomic bins reconstruction revealed systematic shifts in microbial community composition and metabolic potential, as well as changing ecological strategies in response to anthropogenic perturbation of the oil field ecosystem, related to length of time in production. The microbial communities were initially dominated by slow growing anaerobes such as members of the Thermotogales and Clostridiales adapted to living on hydrocarbons and complex refractory organic matter. However, as seawater and nitrate injection (used for secondary oil production) delivered oxidants, the microbial community composition progressively changed to fast growing opportunists such as members of the Deferribacteres, Delta-, Epsilon- and Gammaproteobacteria, with energetically more favorable metabolism (for example, nitrate reduction, H2S, sulfide and sulfur oxidation). This perturbation has profound consequences for understanding the microbial ecology of the system and is of considerable practical importance as it promotes detrimental processes such as reservoir souring and metal corrosion. These findings provide a new conceptual framework for understanding the petroleum reservoir biosphere and have consequences for developing strategies to manage microbiological problems in the oil industry.
Surface chemistry governs cellular tropism of nanoparticles in the brain
Authors: Song Eric , Gaudin Alice , King Amanda R. , Seo Young-Eun , Suh Hee-Won , Deng Yang , Cui Jiajia , Tietjen Gregory T. , Huttner Anita , Saltzman W. Mark 
Published: May 2017

AbstractNanoparticles are of long-standing interest for the treatment of neurological diseases such as glioblastoma. Most past work focused on methods to introduce nanoparticles into the brain, suggesting that reaching the brain interstitium will be sufficient to ensure therapeutic efficacy. However, optimized nanoparticle design for drug delivery to the central nervous system is limited by our understanding of their cellular deposition in the brain. Here, we investigated the cellular fate of poly(lactic acid) nanoparticles presenting different surface chemistries, after administration by convection-enhanced delivery. We demonstrate that nanoparticles with ‘stealth’ properties mostly avoid internalization by all cell types, but internalization can be enhanced by functionalization with bio-adhesive end-groups. We also show that association rates measured in cultured cells predict the extent of internalization of nanoparticles in cell populations. Finally, evaluating therapeutic efficacy in an orthotopic model of glioblastoma highlights the need to balance significant uptake without inducing adverse toxicity.
Energy landscape-driven non-equilibrium evolution of inherent structure in disordered material
Authors: Fan Yue , Iwashita Takuya , Egami Takeshi 
Published: May 2017

AbstractComplex states in glasses can be neatly expressed by the potential energy landscape (PEL). However, because PEL is highly multi-dimensional it is difficult to describe how the system moves around in PEL. Here we demonstrate that it is possible to predict the evolution of macroscopic state in a metallic glass, such as ageing and rejuvenation, through a set of simple equations describing excitations in the PEL. The key to this simplification is the realization that the step of activation from the initial state to the saddle point in PEL and the following step of relaxation to the final state are essentially decoupled. The model shows that the interplay between activation and relaxation in PEL is the key driving force that simultaneously explains both the equilibrium of supercooled liquid and the thermal hysteresis observed in experiments. It further predicts anomalous peaks in truncated thermal scanning, validated by independent molecular dynamics simulation.
Iron limitation of microbial phosphorus acquisition in the tropical North Atlantic
Authors: Browning T. J. , Achterberg E. P. , Yong J. C. , Rapp I. , Utermann C. , Engel A. , Moore C. M. 
Published: May 2017

AbstractIn certain regions of the predominantly nitrogen limited ocean, microbes can become co-limited by phosphorus. Within such regions, a proportion of the dissolved organic phosphorus pool can be accessed by microbes employing a variety of alkaline phosphatase (APase) enzymes. In contrast to the PhoA family of APases that utilize zinc as a cofactor, the recent discovery of iron as a cofactor in the more widespread PhoX and PhoD implies the potential for a biochemically dependant interplay between oceanic zinc, iron and phosphorus cycles. Here we demonstrate enhanced natural community APase activity following iron amendment within the low zinc and moderately low iron Western North Atlantic. In contrast we find no evidence for trace metal limitation of APase activity beneath the Saharan dust plume in the Eastern Atlantic. Such intermittent iron limitation of microbial phosphorus acquisition provides an additional facet in the argument for iron controlling the coupling between oceanic nitrogen and phosphorus cycles.
Low-cesium rice: mutation in OsSOS2 reduces radiocesium in rice grains
Authors: Ishikawa Satoru , Hayashi Shimpei , Abe Tadashi , Igura Masato , Kuramata Masato , Tanikawa Hachidai , Iino Manaka , Saito Takashi , Ono Yuji , Ishikawa Tetsuya , Fujimura Shigeto , Goto Akitoshi , Takagi Hiroki 
Published: May 2017

AbstractIn Japan, radiocesium contamination in foods has become of great concern and it is a primary issue to reduce grain radiocesium concentration in rice (Oryza sativa L.). Here, we report a low-cesium rice mutant 1 (lcs1) with the radiocesium concentration in grain about half that in the wild-type cultivar. Genetic analyses revealed that a mutation in OsSOS2, which encodes a serine/threonine-protein kinase required for the salt overly sensitive (SOS) pathway in plants, is responsible for the decreased cesium (Cs) concentrations in lcs1. Physiological analyses showed that Cs+ uptake by lcs1 roots was significantly decreased under low-potassium (K+) conditions in the presence of sodium (Na+) (low K+/Na+). The transcript levels of several K+ and Na+ transporter genes, such as OsHAK1, OsHAK5, OsAKT1, and OsHKT2;1 were significantly down-regulated in lcs1 grown at low K+/Na+. The decreased Cs+ uptake in lcs1 might be closely related to the lower expression of these genes due to the K+/Na+ imbalance in the lcs1 roots caused by the OsSOS2 mutation. Since the lcs1 plant had no significant negative effects on agronomic traits when grown in radiocesium-contaminated paddy fields, this mutant could be used directly in agriculture for reducing radiocesium in rice grains.
Peptide-specific engagement of the activating NK cell receptor KIR2DS1
Authors: Chapel Anaïs , Garcia-Beltran Wilfredo F. , Hölzemer Angelique , Ziegler Maja , Lunemann Sebastian , Martrus Gloria , Altfeld Marcus 
Published: May 2017

AbstractThe activating NK cell receptor KIR2DS1 has been shown to be involved in many disorders including autoimmune diseases, malignancies and pregnancy outcomes. However, the precise ligands and functions of this receptor remain unclear. We aimed to gain a better understanding of the factors involved in the binding of KIR2DS1 and its inhibitory counterpart KIR2DL1 to HLA class I molecules, and the consequences for KIR2DS1+ NK-cell function. A systematic screen that assessed binding to 97 HLA-I proteins confirmed that KIR2DS1-binding was narrowly restricted to HLA-C group 2 complexes, while KIR2DL1 showed a broader binding specificity. Using KIR2DS1ζ+ Jurkat reporter-cells and peptide-pulsed 721.221.TAP1KO-HLA-C*06:02 cells, we identified the synthetic peptide SRGPVHHLL presented by HLA-C*06:02 that strongly engaged KIR2DS1- and KIR2DL1-binding. Functional analysis showed that this HLA-C*06:02-presented peptide can furthermore activate primary KIR2DS1(+) NK cell clones. Thus, we demonstrated peptide-dependent binding of the activating NK cell receptor KIR2DS1, providing new insights into the underlying mechanisms involved in KIR2DS1-related disorders.
A diastereoselective synthesis of Cebranopadol, a novel analgesic showing NOP/mu mixed agonism
Authors: Fantinati Anna , Bianco Sara , Guerrini Remo , Salvadori Severo , Pacifico Salvatore , Cerlesi Maria Camilla , Calo Girolamo , Trapella Claudio 
Published: May 2017

AbstractA diastereoselective synthesis of the title compound as a single E diastereomer has been efficiently accomplished by assembling the featured pyrano-indole scaffold of the spiro[cyclohexane-dihydropyrano[3,4-b]-indole]-amine framework through an oxa-Pictet-Spengler reaction, promoted by a cheap and green Zeolite catalyst. Basic pharmacological experiments demonstrate that Cebranopadol acts as a mixed nociception/orphanin FQ (NOP) and mu (MOP) opioid receptor agonist useful for treatment of chronic pain.
Comparison of accuracy between FSL’s FIRST and Freesurfer for caudate nucleus and putamen segmentation
Authors: Perlaki Gabor , Horvath Reka , Nagy Szilvia Anett , Bogner Peter , Doczi Tamas , Janszky Jozsef , Orsi Gergely 
Published: May 2017

AbstractAlthough several methods have been developed to automatically delineate subcortical gray matter structures from MR images, the accuracy of these algorithms has not been comprehensively examined. Most of earlier studies focused primarily on the hippocampus. Here, we assessed the accuracy of two widely used non-commercial programs (FSL-FIRST and Freesurfer) for segmenting the caudate and putamen. T1-weighted 1 mm3 isotropic resolution MR images were acquired for thirty healthy subjects (15 females). Caudate nucleus and putamen were segmented manually by two independent observers and automatically by FIRST and Freesurfer (v4.5 and v5.3). Utilizing manual labels as reference standard the following measures were studied: Dice coefficient (D), percentage volume difference (PVD), absolute volume difference as well as intraclass correlation coefficient (ICC) for consistency and absolute agreement. For putamen segmentation, FIRST achieved higher D, lower PVD and higher ICC for absolute agreement with manual tracing than either version of Freesurfer. Freesurfer overestimated the putamen, while FIRST was not statistically different from manual tracing. The ICC for consistency with manual tracing was similar between the two methods. For caudate segmentation, FIRST and Freesurfer performed more similarly. In conclusion, Freesurfer and FIRST are not equivalent when comparing to manual tracing. FIRST was superior for putaminal segmentation.
Synchronized and mixed outbreaks of coupled recurrent epidemics
Authors: Zheng Muhua , Zhao Ming , Min Byungjoon , Liu Zonghua 
Published: May 2017

AbstractEpidemic spreading has been studied for a long time and most of them are focused on the growing aspect of a single epidemic outbreak. Recently, we extended the study to the case of recurrent epidemics (Sci. Rep. 5, 16010 (2015)) but limited only to a single network. We here report from the real data of coupled regions or cities that the recurrent epidemics in two coupled networks are closely related to each other and can show either synchronized outbreak pattern where outbreaks occur simultaneously in both networks or mixed outbreak pattern where outbreaks occur in one network but do not in another one. To reveal the underlying mechanism, we present a two-layered network model of coupled recurrent epidemics to reproduce the synchronized and mixed outbreak patterns. We show that the synchronized outbreak pattern is preferred to be triggered in two coupled networks with the same average degree while the mixed outbreak pattern is likely to show for the case with different average degrees. Further, we show that the coupling between the two layers tends to suppress the mixed outbreak pattern but enhance the synchronized outbreak pattern. A theoretical analysis based on microscopic Markov-chain approach is presented to explain the numerical results. This finding opens a new window for studying the recurrent epidemics in multi-layered networks.