bluuebunny/crossref_metadata_2025_split huggingface dataset:
Microaneurysms cause refractory macular edema in branch retinal vein occlusion
Authors: Tomiyasu Taneto , Hirano Yoshio , Yoshida Munenori , Suzuki Norihiro , Nishiyama Takeshi , Uemura Akiyoshi , Yasukawa Tsutomu , Ogura Yuichiro 
Published: July 2016

AbstractIntravitreal anti-vascular endothelial growth factor (VEGF) agents can treat macular edema (ME) in branch retinal vein occlusion (BRVO). However, refractory ME, the mechanism of which is not well elucidated, occurs frequently. Sixty-six eyes with ME secondary to BRVO were enrolled in this retrospective observational case-control study. Twenty eyes received a sub-Tenon’s capsule injection of triamcinolone acetonide (STTA), 22 eyes an intravitreal anti-VEGF injection (ranibizumab), 16 eyes were switched from STTA to ranibizumab, 4 eyes underwent vitrectomy and 4 eyes were untreated. Multiple regression analysis and multivariate logistic regression analysis were conducted, respectively, to identify independent predictors of visual acuity (VA) prognosis and risk factors for refractory ME longer than 1 year. The mechanism of refractory ME and therapeutic approaches for identified risk factors also were investigated. Thirty-four (52%) eyes had refractory ME for over 1 year. Microaneurysms were identified as risk factors for refractory ME, leading to poor final VA. Ranibizumab suppressed microaneurysm formation and refractory ME, with early administration more effective. For already formed microaneurysms, laser photocoagulation reduced additional treatments. Microaneurysms may cause refractory ME in BRVO. Alternative therapy to suppress microaneurysms should be considered to prevent refractory ME in patients with BRVO.
Application of nanodisc technology for direct electrochemical investigation of plant cytochrome P450s and their NADPH P450 oxidoreductase
Authors: Bavishi Krutika , Laursen Tomas , Martinez Karen L. , Møller Birger Lindberg , Della Pia Eduardo Antonio 
Published: July 2016

AbstractDirect electrochemistry of cytochrome P450 containing systems has primarily focused on investigating enzymes from microbes and animals for bio-sensing applications. Plant P450s receive electrons from NADPH P450 oxidoreductase (POR) to orchestrate the bio-synthesis of a plethora of commercially valuable compounds. In this report, full length CYP79A1, CYP71E1 and POR of the dhurrin pathway in Sorghum bicolor were reconstituted individually in nanoscale lipid patches, “nanodiscs” and directly immobilized on unmodified gold electrodes. Cyclic voltammograms of CYP79A1 and CYP71E1 revealed reversible redox peaks with average midpoint potentials of 80 ± 5 mV and 72 ± 5 mV vs. Ag/AgCl, respectively. POR yielded two pairs of redox peaks with midpoint potentials of 90 ± 5 mV and −300 ± 10 mV, respectively. The average heterogeneous electron transfer rate constant was calculated to be ~1.5 s−1. POR was electro-catalytically active while the P450s generated hydrogen peroxide (H2O2). These nanodisc-based investigations lay the prospects and guidelines for construction of a simplified platform to perform mediator-free, direct electrochemistry of non-engineered cytochromes P450 under native-like conditions. It is also a prelude for driving plant P450 systems electronically for simplified and cost-effective screening of potential substrates/inhibitors and fabrication of nano-bioreactors for synthesis of high value natural products.
Oxidative Unzipping and Transformation of High Aspect Ratio Boron Nitride Nanotubes into “White Graphene Oxide” Platelets
Authors: Nautiyal Pranjal , Loganathan Archana , Agrawal Richa , Boesl Benjamin , Wang Chunlei , Agarwal Arvind 
Published: July 2016

AbstractMorphological and chemical transformations in boron nitride nanotubes under high temperature atmospheric conditions is probed in this study. We report atmospheric oxygen induced cleavage of boron nitride nanotubes at temperatures exceeding 750 °C for the first time. Unzipping is then followed by coalescence of these densely clustered multiple uncurled ribbons to form stacks of 2D sheets. FTIR and EDS analysis suggest these 2D platelets to be Boron Nitride Oxide platelets, with analogous structure to Graphene Oxide and therefore we term them as “White Graphene Oxide” (WGO). However, not all BNNTs deteriorate even at temperatures as high as 1000 °C. This leads to the formation of a hybrid nanomaterial system comprising of 1D BN nanotubes and 2D BN oxide platelets, potentially having advanced high temperature sensing, radiation shielding, mechanical strengthening, electron emission and thermal management applications due to synergistic improvement of multi-plane transport and mechanical properties. This is the first report on transformation of BNNT bundles to a continuous array of White Graphene Oxide nanoplatelet stacks.
Dcsbis (PA2771) from Pseudomonas aeruginosa is a highly active diguanylate cyclase with unique activity regulation
Authors: Chen Ying , Liu Shiheng , Liu Cuilan , Huang Yan , Chi Kaikai , Su Tiantian , Zhu Deyu , Peng Jin , Xia Zhijie , He Jing , Xu Sujuan , Hu Wei , Gu Lichuan 
Published: July 2016

AbstractC-di-GMP (3’,5’ -Cyclic diguanylic acid) is an important second messenger in bacteria that influences virulence, motility, biofilm formation, and cell division. The level of c-di-GMP in cells is controlled by diguanyl cyclases (DGCs) and phosphodiesterases (PDEs). Here, we report the biochemical functions and crystal structure of the potential diguanylase Dcsbis (PA2771, a diguanylate cyclase with a self-blocked I-site) from Pseudomonas aeruginosa PAO1. The full-length Dcsbis protein contains an N-terminal GAF domain and a C-terminal GGDEF domain. We showed that Dcsbis tightly coordinates cell motility without markedly affecting biofilm formation and is a diguanylate cyclase with a catalytic activity much higher than those of many other DGCs. Unexpectedly, we found that a peptide loop (protecting loop) extending from the GAF domain occupies the conserved inhibition site, thereby largely relieving the product-inhibition effect. A large hydrophobic pocket was observed in the GAF domain, thus suggesting that an unknown upstream signaling molecule may bind to the GAF domain, moving the protecting loop from the I-site and thereby turning off the enzymatic activity.
The Next Generation Non-competitive Active Polyester Nanosystems for Transferrin Receptor-mediated Peroral Transport Utilizing Gambogic Acid as a Ligand
Authors: Saini P. , Ganugula R. , Arora M. , Kumar M. N. V. Ravi 
Published: July 2016

AbstractThe current methods for targeted drug delivery utilize ligands that must out-compete endogenous ligands in order to bind to the active site facilitating the transport. To address this limitation, we present a non-competitive active transport strategy to overcome intestinal barriers in the form of tunable nanosystems (NS) for transferrin receptor (TfR) utilizing gambogic acid (GA), a xanthanoid, as its ligand. The NS made using GA conjugated poly(lactide-co-glycolide) (PLGA) have shown non-competitive affinity to TfR evaluated in cell/cell-free systems. The fluorescent PLGA-GA NS exhibited significant intestinal transport and altered distribution profile compared to PLGA NS in vivo. The PLGA-GA NS loaded with cyclosporine A (CsA), a model peptide, upon peroral dosing to rodents led to maximum plasma concentration of CsA at 6 h as opposed to 24 h with PLGA-NS with at least 2-fold higher levels in brain at 72 h. The proposed approach offers new prospects for peroral drug delivery and beyond.
Biodiversity and Activity of the Gut Microbiota across the Life History of the Insect Herbivore Spodoptera littoralis
Authors: Chen Bosheng , Teh Beng-Soon , Sun Chao , Hu Sirui , Lu Xingmeng , Boland Wilhelm , Shao Yongqi 
Published: July 2016

AbstractMicrobes that live inside insects play critical roles in host nutrition, physiology and behavior. Although Lepidoptera (butterflies and moths) are one of the most diverse insect taxa, their microbial symbionts are little-studied, particularly during metamorphosis. Here, using ribosomal tag pyrosequencing of DNA and RNA, we investigated biodiversity and activity of gut microbiotas across the holometabolous life cycle of Spodoptera littoralis, a notorious agricultural pest worldwide. Proteobacteria and Firmicutes dominate but undergo a structural “metamorphosis” in tandem with its host. Enterococcus, Pantoea and Citrobacter were abundant and active in early-instar, while Clostridia increased in late-instar. Interestingly, only enterococci persisted through metamorphosis. Female adults harbored high proportions of Enterococcus, Klebsiella and Pantoea, whereas males largely shifted to Klebsiella. Comparative functional analysis with PICRUSt indicated that early-instar larval microbiome was more enriched for genes involved in cell motility and carbohydrate metabolism, whereas in late-instar amino acid, cofactor and vitamin metabolism increased. Genes involved in energy and nucleotide metabolism were abundant in pupae. Female adult microbiome was enriched for genes relevant to energy metabolism, while an increase in the replication and repair pathway was observed in male. Understanding the metabolic activity of these herbivore-associated microbial symbionts may assist the development of novel pest-management strategies.
Unmixing hysteresis loops of the late Miocene–early Pleistocene loess-red clay sequence
Authors: Zhang Rui , Necula Cristian , Heslop David , Nie Junsheng 
Published: July 2016

AbstractMagnetic paleoclimatic records often represent mixed environmental signals. Unmixing these signals may improve our understanding of the paleoenvironmental information contained within these records, but such a task is challenging. Here we report an example of numerical unmixing of magnetic hysteresis data obtained from Chinese loess and red clay sequences. We find that the mixed magnetic assemblages of the loess and red clay sediments both contain a component characterized by a narrow hysteresis loop, the abundance of which is positively correlated with magnetic susceptibility. This component has grain sizes close to the superparamagnetic/stable single domain boundary and is attributed to pedogenic activity. Furthermore, a wasp-waisted component is found in both the loess and red clay, however, the wasp-waisted form is more constricted in the red clay. We attribute this component to a mixture of detrital ferrimagnetic grains with pedogenic hematite. The abundance of this component decreases from the base to the top of the red clay, a pattern we attribute to decreased hematite production over the Chinese Loess Plateau (CLP) due to long-term climate cooling. This work demonstrates the potential of hysteresis loop unmixing to recover quantitative paleoclimatic information carried by both low and high coercivity magnetic minerals.
Detecting Topological Defect Dark Matter Using Coherent Laser Ranging System
Authors: Yang Wanpeng , Leng Jianxiao , Zhang Shuangyou , Zhao Jianye 
Published: July 2016

AbstractIn the last few decades, optical frequency combs with high intensity, broad optical bandwidth and directly traceable discrete wavelengths have triggered rapid developments in distance metrology. However, optical frequency combs to date have been limited to determine the absolute distance to an object (such as satellite missions). We propose a scheme for the detection of topological defect dark matter using a coherent laser ranging system composed of dual-combs and an optical clock via nongravitational signatures. The dark matter field, which comprises a defect, may interact with standard model particles, including quarks and photons, resulting in the alteration of their masses. Thus, a topological defect may function as a dielectric material with a distinctive frequency-depend index of refraction, which would cause the time delay of a periodic extraterrestrial or terrestrial light. When a topological defect passes through the Earth, the optical path of long-distance vacuum path is altered, this change in optical path can be detected through the coherent laser ranging system. Compared to continuous wavelength(cw) laser interferometry methods, dual-comb interferometry in our scheme excludes systematic misjudgement by measuring the absolute optical path length.
Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling
Authors: Arabyan Narine , Park Dayoung , Foutouhi Soraya , Weis Allison M. , Huang Bihua C. , Williams Cynthia C. , Desai Prerak , Shah Jigna , Jeannotte Richard , Kong Nguyet , Lebrilla Carlito B. , Weimer Bart C. 
Published: July 2016

AbstractComplex glycans cover the gut epithelial surface to protect the cell from the environment. Invasive pathogens must breach the glycan layer before initiating infection. While glycan degradation is crucial for infection, this process is inadequately understood. Salmonella contains 47 glycosyl hydrolases (GHs) that may degrade the glycan. We hypothesized that keystone genes from the entire GH complement of Salmonella are required to degrade glycans to change infection. This study determined that GHs recognize the terminal monosaccharides (N-acetylneuraminic acid (Neu5Ac), galactose, mannose, and fucose) and significantly (p < 0.05) alter infection. During infection, Salmonella used its two GHs sialidase nanH and amylase malS for internalization by targeting different glycan structures. The host glycans were altered during Salmonella association via the induction of N-glycan biosynthesis pathways leading to modification of host glycans by increasing fucosylation and mannose content, while decreasing sialylation. Gene expression analysis indicated that the host cell responded by regulating more than 50 genes resulting in remodeled glycans in response to Salmonella treatment. This study established the glycan structures on colonic epithelial cells, determined that Salmonella required two keystone GHs for internalization, and left remodeled host glycans as a result of infection. These data indicate that microbial GHs are undiscovered virulence factors.
Morphologically and Functionally Distinct Lipid Droplet Subpopulations
Authors: Zhang Shuyan , Wang Yang , Cui Liujuan , Deng Yaqin , Xu Shimeng , Yu Jinhai , Cichello Simon , Serrero Ginette , Ying Yunshu , Liu Pingsheng 
Published: July 2016

AbstractLipid droplet (LD), a multi-functional organelle, is often found to associate with other cellular membranous structures and vary in size in a given cell, which may be related to their functional diversity. Here we established a method to separate LD subpopulations from isolated CHO K2 LDs into three different size categories. The subpopulation with smallest LDs was nearly free of ER and other membranous structures while those with larger LDs contained intact ER. These distinct subpopulations of LDs differed in their protein composition and ability to recruit proteins. This method was also applicable to LDs obtained from other sources, such as Huh7 cells, mouse liver and brown adipose tissue, et al. We developed an in vitro assay requiring only isolated LDs, Coenzyme A and ATP to drive lipid synthesis. The LD subpopulation nearly depleted of ER was able to incorporate fatty acids into triacylglycerol and phospholipids. Together, our data demonstrate that LDs in a given cell are heterogeneous in size and function and suggest that LDs are one of cellular lipid synthetic organelles.
Long Term Outcome of Routine Image-enhanced Endoscopy in Newly Diagnosed Head and Neck Cancer: a Prospective Study of 145 Patients
Authors: Chung Chen-Shuan , Lo Wu-Chia , Wen Ming-Hsun , Hsieh Chen-Hsi , Lin Yu-Chin , Liao Li-Jen 
Published: July 2016

AbstractSynchronous second primary tumors (SPTs), especially esophageal squamous cell neoplasia (ESCN), in patients with head and neck squamous cell carcinoma (HNSCC) are not uncommon. Image-enhanced endoscopy (IEE) screening may identify SPTs while there is no evidence to support its benefit. We prospectively recruited an adult cohort with newly-diagnosed HNSCC for IEE screening of upper gastrointestinal (UGI) tract neoplasia. 145 HNSCC patients were recruited. 22 (15.2%) patients had synchronous UGI tract neoplasia, including 20 ESCNs and 2 gastric adenocarcinoma. At a median follow-up of 2.72 (±1.73) years, the 3-year overall survival (OS) rate was 0.71. HNSCC patients with synchronous ESCN/UGI tract neoplasia had poorer prognosis than those without (multivariate analysis, hazard ratio [HR] 2.75/2.79, 95% confidence interval [CI] 1.11~6.82/1.15~6.80, p = 0.03/0.02). HNSCC patients with advanced (stage III&IV) ESCN had worst survivals (p < 0.001). Among those with synchronous ESCNs, hypopharyngeal cancers were associated with poorer prognosis when compared with oral cancers (HR 2.36, 95% CI 1.08~5.15, p = 0.03). IEE screening for UGI SPTs in HNSCC patients could be used for risk stratification and prognosis prediction. HNSCC patients with advanced ESCN had the worst prognosis. Further studies are needed to demonstrate the survival benefits from IEE screening.
Urinary melatonin-sulfate/cortisol ratio and the presence of prostate cancer: A case-control study
Authors: Tai Shu-Yu , Huang Shu-Pin , Bao Bo-Ying , Wu Ming-Tsang 
Published: July 2016

AbstractThe circadian-related hormones, melatonin and cortisol, have oncostatic and immunosuppressive properties. This study examined the relationship between these two biomarkers and the presence of prostate cancer. We measured their major metabolites in urine collected from 120 newly diagnosed prostate cancer patients and 240 age-matched controls from January 2011 to April 2014. Compared with patients with lower urinary melatonin-sulfate or melatonin-sulfate/cortisol (MT/C) ratio levels, those with above-median levels were significantly less likely to have prostate cancer (adjusted OR (aOR) = 0.59, 95% CI = 0.35–0.99; aOR = 0.46, 95% CI: 0.27–0.77) or advanced stage prostate cancer (aOR = 0.49, 95% CI = 0.26–0.89; aOR = 0.33, 95% CI = 0.17–0.62). The combined effect of both low MT/C ratios and PSA levels exceeding 10 ng/ml was an 8.82-fold greater likelihood of prostate cancer and a 32.06-fold greater likelihood of advanced stage prostate cancer, compared to those with both high MT/C ratios and PSA levels less than 10 ng/ml. In conclusion, patients with high melatonin-sulfate levels or a high MT/C ratio were less likely to have prostate cancer or advanced stage prostate. Besides, a finding of a low MT/C ratio combined with a PSA level exceeding 10 ng/ml showed the greatest potential in detecting prostate cancer and advanced stage prostate cancer.
Bolide impact triggered the Late Triassic extinction event in equatorial Panthalassa
Authors: Onoue Tetsuji , Sato Honami , Yamashita Daisuke , Ikehara Minoru , Yasukawa Kazutaka , Fujinaga Koichiro , Kato Yasuhiro , Matsuoka Atsushi 
Published: July 2016

AbstractExtinctions within major pelagic groups (e.g., radiolarians and conodonts) occurred in a stepwise fashion during the last 15 Myr of the Triassic. Although a marked decline in the diversity of pelagic faunas began at the end of the middle Norian, the cause of the middle Norian extinction is uncertain. Here we show a possible link between the end-middle Norian radiolarian extinction and a bolide impact. Two palaeoenvironmental events occurred during the initial phase of the radiolarian extinction interval: (1) a post-impact shutdown of primary and biogenic silica production within a time span of 104–105 yr and (2) a sustained reduction in the sinking flux of radiolarian silica for ~0.3 Myr after the impact. The catastrophic collapse of the pelagic ecosystem at this time was probably the dominant factor responsible for the end-middle Norian conodont extinction.
Effect of heavy haze and aerosol pollution on rice and wheat productions in China
Authors: Tie Xuexi , Huang Ru-Jin , Dai Wenting , Cao Junji , Long Xin , Su Xiaoli , Zhao Shuyu , Wang Qiyuan , Li Guohui 
Published: July 2016

AbstractIn China, regional haze pollution is a serious environmental problem. The impact on ecosystem, however, is not clearly understood. This study investigates the effect of regional haze pollution on the yields of rice and wheat in China. The spatial and temporal distributions of aerosol optical depth (AOD) show high particulate pollution in the North China Plain region, Yangtze River Delta region, the central eastern China and the Si Chuan Basin, coexisted largely with crop growth in time and space. The solar irradiance reaching these regions is estimated to reduce by up to 28–49%, calculated using the AOD distributions and tropospheric ultraviolet-visible (TUV) model. Reduction of solar irradiance in these regions can depress optimal yields of about 45% of rice and 75% of wheat growth in China, leading to 2% reduction in total rice production and 8% reduction in total wheat production in China. However, there are large uncertainties of the estimate related to the diffuse solar radiation. For high diffuse radiation case, the estimate reductions of rice and wheat decrease to 1% and 4.5%, respectively. A further detailed study is needed to clearly understand this effect to meet the growing food demand in the nation in the coming decades.
The size-distribution of Earth’s lakes
Authors: Cael B. B. , Seekell D. A. 
Published: July 2016

AbstractGlobally, there are millions of small lakes, but a small number of large lakes. Most key ecosystem patterns and processes scale with lake size, thus this asymmetry between area and abundance is a fundamental constraint on broad-scale patterns in lake ecology. Nonetheless, descriptions of lake size-distributions are scarce and empirical distributions are rarely evaluated relative to theoretical predictions. Here we develop expectations for Earth’s lake area-distribution based on percolation theory and evaluate these expectations with data from a global lake census. Lake surface areas ≥0.46 km2 are power-law distributed with a tail exponent (τ = 2.14) and fractal dimension (d = 1.4), similar to theoretical expectations (τ = 2.05; d = 4/3). Lakes <0.46 km2 are not power-law distributed. An independently developed regional lake census exhibits a similar transition and consistency with theoretical predictions. Small lakes deviate from the power-law distribution because smaller lakes are more susceptible to dynamical change and topographic behavior at sub-kilometer scales is not self-similar. Our results provide a robust characterization and theoretical explanation for the lake size-abundance relationship, and form a fundamental basis for understanding and predicting patterns in lake ecology at broad scales.
Early Expressive Language Skills Predict Long-Term Neurocognitive Outcomes in Cochlear Implant Users: Evidence from the MacArthur–Bates Communicative Development Inventories
Authors: Castellanos Irina , Pisoni David B. , Kronenberger William G. , Beer Jessica 
Published: July 2016

PurposeThe objective of the present article was to document the extent to which early expressive language skills (measured using the MacArthur–Bates Communicative Development Inventories [CDI; Fenson et al., 2006]) predict long-term neurocognitive outcomes in a sample of early-implanted prelingually deaf cochlear implant (CI) users.MethodThe CDI was used to index the early expressive language skills of 32 pediatric CI users after an average of 1.03 years (SD= 0.56, range = 0.39–2.17) of CI experience. Long-term neurocognitive outcomes were assessed after an average of 11.32 (SD= 2.54, range = 7.08–16.52) years of CI experience. Measures of long-term neurocognitive outcomes were derived from gold-standard performance-based and questionnaire-based assessments of language, executive functioning, and academic skills.ResultAnalyses revealed that early expressive language skills, collected on average 1.03 years post cochlear implantation, predicted long-term language, executive functioning, and academic skills up to 16 years later.ConclusionThese findings suggest that early expressive language skills, as indexed by the CDI, are clinically relevant for identifying CI users who may be at high risk for long-term neurocognitive delays and disturbances.