bluuebunny/crossref_metadata_2025_split huggingface dataset:
The treatment of HCV in patients with haemoglobinopathy in Kurdistan Region, Iraq: a single centre experience
Authors: HUSSEIN N. R. , TUNJEL I. , BASHARAT Z. , TAHA A. , IRVING W. 
Published: December 2015

SUMMARYVarious variables that might influence the rapid and sustained virological response to recombinant PEG-IFN-α-2a were explored in Iraqi HCV-infected patients with haemoglobinopathy. Forty-three patients were evaluated for the relationship between rapid virological response (RVR), IL-28B polymorphism, viral load, liver enzyme levels, blood group, ultrasound findings, or HCV genotype and the sustained virological response (SVR) achievement. The overall RVR was 55·81% while the overall SVR was 53·49%. SVR in patients that achieved RVR was 82·61% (P = 0·0004). A significant association was found between initial alanine transaminase levels and viral load with SVR achievement (P = 0·025) and (P = 0·004), respectively. Thirty-two (74%) out of 43 of our samples were host genotyped at the IL-28B locus as CC, a significant association was found between CC group and SVR achievement (P = 0·04). Of our samples, 23/43 (53%) were typed as HCV genotype 4, 10/43 (23%) as genotype 1, 9/43 (20·9%) as genotype 3 and 1/43 (2·3%) as genotype 2. A significant association was found between genotype 3 and SVR achievement (P = 0·006). Multivariate analysis showed that only RVR achievement independently associated with SVR in the Iraqi population (P = 0·00). These results can be used to classify the patients requiring the more expensive new direct-acting antiviral drugs.
Patient-level analysis of incident vancomycin-resistant enterococci colonization and antibiotic days of therapy
Authors: McKINNELL J. A. , KUNZ D. F. , MOSER S. A. , VANGALA S. , TSENG C.-H. , SHAPIRO M. , MILLER L. G. 
Published: December 2015

SUMMARYVancomycin-resistant enterococci (VRE) infections are a public health threat associated with increased patient mortality and healthcare costs. Antibiotic usage, particularly cephalosporins, has been associated with VRE colonization and VRE bloodstream infections (VRE BSI). We examined the relationship between antimicrobial usage and incident VRE colonization at the individual patient level. Prospective, weekly surveillance was undertaken for incident VRE colonization defined by negative admission but positive surveillance swab in a medical intensive care unit over a 17-month period. Antimicrobial exposure was quantified as days of therapy (DOT)/1000 patient-days. Multiple logistic regression was used to analyse incident VRE colonization and antibiotic DOT, controlling for demographic and clinical covariates. Ninety-six percent (1398/1454) of admissions were swabbed within 24 h of intensive care unit (ICU) arrival and of the 380 patients in the ICU long enough for weekly surveillance, 83 (22%) developed incident VRE colonization. Incident colonization was associated in bivariate analysis with male gender, more previous hospital admissions, longer previous hospital stay, and use of cefepime/ceftazidime, fluconazole, azithromycin, and metronidazole (P< 0·05). After controlling for demographic and clinical covariates, metronidazole was the only antibiotic independently associated with incident VRE colonization (odds ratio 2·0, 95% confidence interval 1·2–3·3,P< 0·009). Our findings suggest that risk of incident VRE colonization differs between individual antibiotic agents and support the possibility that antimicrobial stewardship may impact VRE colonization and infection.
Obesity and diabetes: the link between adipose tissue dysfunction and glucose homeostasis
Authors: Abranches Monise Viana , Oliveira Fernanda Cristina Esteves de , Conceição Lisiane Lopes da , Peluzio Maria do Carmo Gouveia 
Published: December 2015

AbstractObesity and type 2 diabetes mellitus (T2DM) epidemics, which have already spread, imply the possibility of both conditions being closely related. Thus, the goal of the present review was to draw a parallel between obesity, adipose tissue (AT) changes, and T2DM development. To this end, a search was conducted in PubMed, MEDLINE and SciELO databases, using the following key words and their combinations: obesity; diabetes; insulin resistance; diet; weight loss; adipocin; inflammation markers; and interleukins. Based on a literature review, AT dysfunction observed in obesity is characterised by adipocyte hypertrophy, macrophage infiltration, impaired insulin signalling and insulin resistance. In addition, there is release of inflammatory adipokines and an excessive amount of NEFA promoting ectopic fat deposition and lipotoxicity in muscle, liver and pancreas. Recent evidence supports the hypothesis that the conception of AT as a passive energy storage organ should be replaced by a dynamic endocrine organ, which regulates metabolism through a complex adipocyte communication with the surrounding microenvironment. The present review demonstrates how glucose homeostasis is changed by AT dysfunction. A better understanding of this relationship enables performing nutritional intervention strategies with the goal of preventing T2DM.
The role of nutrition on cognition and brain health in ageing: a targeted approach
Authors: Monti Jim M. , Moulton Christopher J. , Cohen Neal J. 
Published: December 2015

AbstractAnimal experiments and cross-sectional or prospective longitudinal research in human subjects suggest a role for nutrition in cognitive ageing. However, data from randomised controlled trials (RCT) that seek causal evidence for the impact of nutrients on cognitive ageing in humans often produce null results. Given that RCT test hypotheses in a rigorous fashion, one conclusion could be that the positive effects of nutrition on the aged brain observed in other study designs are spurious. On the other hand, it may be that the design of many clinical trials conducted thus far has been less than optimal. In the present review, we offer a blueprint for a more targeted approach to the design of RCT in nutrition, cognition and brain health in ageing that focuses on three key areas. First, the role of nutrition is more suited for the maintenance of health rather than the treatment of disease. Second, given that cognitive functions and brain regions vary in their susceptibility to ageing, those that especially deteriorate in senescence should be focal points in evaluating the efficacy of an intervention. Third, the outcome measures that assess change due to nutrition, especially in the cognitive domain, should not necessarily be the same neuropsychological tests used to assess gross brain damage or major pathological conditions. By addressing these three areas, we expect that clinical trials of nutrition, cognition and brain health in ageing will align more closely with other research in this field, and aid in revealing the true nature of nutrition’s impact on the aged brain.
Inbreeding depression and the cost of inbreeding on seed germination
Authors: Baskin Jerry M. , Baskin Carol C. 
Published: December 2015

AbstractWe review the literature on effects of inbreeding depression (ID) on seed germination for 743 case studies of 233 species in 64 families. For 216 case studies, we also review the relationship between mass and germination in inbred vs. outbred seeds. Inbred seeds germinated equally well as outbred seeds in 51.1% of 743 case studies, but better than outbred seeds in only 8.1%. Inc. 50.5% of 216 cases, mass of inbred seeds was equal to (38.0%) or larger than (12.5%) that of outbred seeds. The magnitude of ID spans most of the − 1 to +1 range for relative performance for germination of inbred vs. outbred seeds; in contrast to what might be expected, seed germinability often is not negatively correlated with the coefficient of inbreeding (F) or positively corrected with population genetic diversity; neither heterosis nor outbreeding depression for germination is common in crosses between populations; and ID in most endemics is low and does not differ from that of widespread congeners. Our results on the effects of ID on seed mass and germination do not agree with the limited number of comparisons Darwin (1876) made on the effects of selfing vs. outcrossing on these two life-history traits. Recommendations are made on how to improve dormancy breaking and germination procedures in order to make the results of studies on ID more relevant to the natural world.
Development of Functional Surfaces on High-Density Polyethylene (HDPE) via Gas-Assisted Etching (GAE) Using Focused Ion Beams
Authors: Sezen Meltem , Bakan Feray 
Published: December 2015

AbstractIrradiation damage, caused by the use of beams in electron and ion microscopes, leads to undesired physical/chemical material property changes or uncontrollable modification of structures. Particularly, soft matter such as polymers or biological materials is highly susceptible and very much prone to react on electron/ion beam irradiation. Nevertheless, it is possible to turn degradation-dependent physical/chemical changes from negative to positive use when materials are intentionally exposed to beams. Especially, controllable surface modification allows tuning of surface properties for targeted purposes and thus provides the use of ultimate materials and their systems at the micro/nanoscale for creating functional surfaces. In this work, XeF2 and I2 gases were used in the focused ion beam scanning electron microscope instrument in combination with gallium ion etching of high-density polyethylene surfaces with different beam currents and accordingly different gas exposure times resulting at the same ion dose to optimize and develop new polymer surface properties and to create functional polymer surfaces. Alterations in the surface morphologies and surface chemistry due to gas-assisted etching-based nanostructuring with various processing parameters were tracked using high-resolution SEM imaging, complementary energy-dispersive spectroscopic analyses, and atomic force microscopic investigations.
High-Resolution Imaging and Spectroscopy at High Pressure: A Novel Liquid Cell for the Transmission Electron Microscope
Authors: Tanase Mihaela , Winterstein Jonathan , Sharma Renu , Aksyuk Vladimir , Holland Glenn , Liddle James A. 
Published: December 2015

AbstractWe demonstrate quantitative core-loss electron energy-loss spectroscopy of iron oxide nanoparticles and imaging resolution of Ag nanoparticles in liquid down to 0.24 nm, in both transmission and scanning transmission modes, in a novel, monolithic liquid cell developed for the transmission electron microscope (TEM). At typical SiN membrane thicknesses of 50 nm the liquid-layer thickness has a maximum change of only 30 nm for the entire TEM viewing area of 200×200µm.
Jurassic climate mode governed by ocean gateway
Authors: Korte Christoph , Hesselbo Stephen P. , Ullmann Clemens V. , Dietl Gerd , Ruhl Micha , Schweigert Günter , Thibault Nicolas 
Published: December 2015

AbstractThe Jurassic (∼201–145 Myr ago) was long considered a warm ‘greenhouse’ period; more recently cool, even ‘icehouse’ episodes have been postulated. However, the mechanisms governing transition between so-called Warm Modes and Cool Modes are poorly known. Here we present a new large high-quality oxygen-isotope dataset from an interval that includes previously suggested mode transitions. Our results show an especially abrupt earliest Middle Jurassic (∼174 Ma) mid-latitude cooling of seawater by as much as 10 °C in the north–south Laurasian Seaway, a marine passage that connected the equatorial Tethys Ocean to the Boreal Sea. Coincidence in timing with large-scale regional lithospheric updoming of the North Sea region is striking, and we hypothesize that northward oceanic heat transport was impeded by uplift, triggering Cool Mode conditions more widely. This extreme climate-mode transition provides a counter-example to other Mesozoic transitions linked to quantitative change in atmospheric greenhouse gas content.
A small-gap electrostatic micro-actuator for large deflections
Authors: Conrad Holger , Schenk Harald , Kaiser Bert , Langa Sergiu , Gaudet Matthieu , Schimmanz Klaus , Stolz Michael , Lenz Miriam 
Published: December 2015

AbstractCommon quasi-static electrostatic micro actuators have significant limitations in deflection due to electrode separation and unstable drive regions. State-of-the-art electrostatic actuators achieve maximum deflections of approximately one third of the electrode separation. Large electrode separation and high driving voltages are normally required to achieve large actuator movements. Here we report on an electrostatic actuator class, fabricated in a CMOS-compatible process, which allows high deflections with small electrode separation. The concept presented makes the huge electrostatic forces within nanometre small electrode separation accessible for large deflections. Electrostatic actuations that are larger than the electrode separation were measured. An analytical theory is compared with measurement and simulation results and enables closer understanding of these actuators. The scaling behaviour discussed indicates significant future improvement on actuator deflection. The presented driving concept enables the investigation and development of novel micro systems with a high potential for improved device and system performance.
Avalanching strain dynamics during the hydriding phase transformation in individual palladium nanoparticles
Authors: Ulvestad A. , Welland M. J. , Collins S. S. E. , Harder R. , Maxey E. , Wingert J. , Singer A. , Hy S. , Mulvaney P. , Zapol P. , Shpyrko O. G. 
Published: December 2015

AbstractPhase transitions in reactive environments are crucially important in energy and information storage, catalysis and sensors. Nanostructuring active particles can yield faster charging/discharging kinetics, increased lifespan and record catalytic activities. However, establishing the causal link between structure and function is challenging for nanoparticles, as ensemble measurements convolve intrinsic single-particle properties with sample diversity. Here we study the hydriding phase transformation in individual palladium nanocubesin situusing coherent X-ray diffractive imaging. The phase transformation dynamics, which involve the nucleation and propagation of a hydrogen-rich region, are dependent on absolute time (aging) and involve intermittent dynamics (avalanching). A hydrogen-rich surface layer dominates the crystal strain in the hydrogen-poor phase, while strain inversion occurs at the cube corners in the hydrogen-rich phase. A three-dimensional phase-field model is used to interpret the experimental results. Our experimental and theoretical approach provides a general framework for designing and optimizing phase transformations for single nanocrystals in reactive environments.
A universal self-charging system driven by random biomechanical energy for sustainable operation of mobile electronics
Authors: Niu Simiao , Wang Xiaofeng , Yi Fang , Zhou Yu Sheng , Wang Zhong Lin 
Published: December 2015

AbstractHuman biomechanical energy is characterized by fluctuating amplitudes and variable low frequency, and an effective utilization of such energy cannot be achieved by classical energy-harvesting technologies. Here we report a high-efficient self-charging power system for sustainable operation of mobile electronics exploiting exclusively human biomechanical energy, which consists of a high-output triboelectric nanogenerator, a power management circuit to convert the random a.c. energy to d.c. electricity at 60% efficiency, and an energy storage device. With palm tapping as the only energy source, this power unit provides a continuous d.c. electricity of 1.044 mW (7.34 W m−3) in a regulated and managed manner. This self-charging unit can be universally applied as a standard ‘infinite-lifetime’ power source for continuously driving numerous conventional electronics, such as thermometers, electrocardiograph system, pedometers, wearable watches, scientific calculators and wireless radio-frequency communication system, which indicates the immediate and broad applications in personal sensor systems and internet of things.
Transcriptome analysis identifies genes involved in adventitious branches formation of Gracilaria lichenoides in vitro
Authors: Wang Wenlei , Li Huanqin , Lin Xiangzhi , Yang Shanjun , Wang Zhaokai , Fang Baishan 
Published: December 2015

AbstractTissue culture could solve the problems associated with Gracilaria cultivation, including the consistent supply of high-quality seed stock, strain improvement and efficient mass culture of high-yielding commercial strains. However, STC lags behind that of higher plants because of the paucity of genomic information. Transcriptome analysis and the identification of potential unigenes involved in the formation and regeneration of callus or direct induction of ABs are essential. Herein, the CK, EWAB and NPA G. lichenoides transcriptomes were analyzed using the Illumina sequencing platform in first time. A total of 17,922,453,300 nucleotide clean bases were generated and assembled into 21,294 unigenes, providing a total gene space of 400,912,038 nucleotides with an average length of 1,883 and N 50 of 5,055 nucleotides and a G + C content of 52.02%. BLAST analysis resulted in the assignment of 13,724 (97.5%), 3,740 (26.6%), 9,934 (70.6%), 10,611 (75.4%), 9,490 (67.4%) and 7,773 (55.2%) unigenes were annotated to the NR, NT, Swiss-Prot, KEGG, COG and GO databases, respectively and the total of annotated unigenes was 14,070. A total of 17,099 transcripts were predicted to possess open reading frames, including 3,238 predicted and 13,861 blasted based on protein databases. In addition, 3,287 SSRs were detected in G.lichenoides, providing further support for genetic variation and marker-assisted selection in the future. Our results suggest that auxin polar transport, auxin signal transduction, crosstalk with other endogenous plant hormones and antioxidant systems, play important roles for ABs formation in G. lichenoides explants in vitro. The present findings will facilitate further studies on gene discovery and on the molecular mechanisms underlying the tissue culture of seaweed.
The influence of mid-latitude storm tracks on hot, cold, dry and wet extremes
Authors: Lehmann Jascha , Coumou Dim 
Published: December 2015

AbstractChanges in mid-latitude circulation can strongly affect the number and intensity of extreme weather events. In particular, high-amplitude quasi-stationary planetary waves have been linked to prolonged weather extremes at the surface. In contrast, analyses of fast-traveling synoptic-scale waves and their direct influence on heat and cold extremes are scarce though changes in such waves have been detected and are projected for the 21st century. Here we apply regression analyses of synoptic activity with surface temperature and precipitation in monthly gridded observational data. We show that over large parts of mid-latitude continental regions, summer heat extremes are associated with low storm track activity. In winter, the occurrence of cold spells is related to low storm track activity over parts of eastern North America, Europe and central- to eastern Asia. Storm tracks thus have a moderating effect on continental temperatures. Pronounced storm track activity favors monthly rainfall extremes throughout the year, whereas dry spells are associated with a lack thereof. Trend analyses reveal significant regional changes in recent decades favoring the occurrence of cold spells in the eastern US, droughts in California and heat extremes over Eurasia.
Rapid Dissolving-Debonding Strategy for Optically Transparent Paper Production
Authors: Chen Jinbo , Han Xiaogang , Fang Zhiqiang , Cheng Fan , Zhao Bin , Lu Pengbo , Li Jun , Dai Jiaqi , Lacey Steven , Elspas Raphael , Jiang Yuhao , Liu Detao , Hu Liangbing 
Published: December 2015

AbstractTransparent paper is an alternative substrate for electronic devices due to its unique properties. However, energy-intensive and/or time-consuming procedures currently limit the scalable production of transparent paper. In this report, we demonstrate a rapid process to fabricate optically transparent paper with regenerative cellulose fibers (RCFs) by employing a dissolving-debonding strategy. The RCFs have an average width of 19.3 μm and length of several hundred microns and are prepared into transparent paper by vacuum filtration. This new dissolving-debonding approach enables high production efficiency while creating transparent paper with excellent optical and mechanical properties.
Measurement of Two-Photon Absorption Cross Section of Metal Ions by a Mass Sedimentation Approach
Authors: Ma Zhuo-Chen , Chen Qi-Dai , Han Bing , Liu Xue-Qing , Song Jun-Feng , Sun Hong-Bo 
Published: December 2015

AbstractThe photo-reduction of metal ions in solution induced by femtosecond laser is an important and novel method for fabricating three-dimensional metal microstructures. However, the nonlinear absorption cross section of metal ions remains unknown because its measurement is difficult. In the present study, a method based on Two-Photon Excited Sedimentation (TPES) is proposed to measure the two-photon absorption cross section (TPACS) of metal ions in solution. The power-squared dependence of the amount of sediment on the excitation intensity was confirmed, revealing that 800 nm femtosecond laser induced reduction of metal ions was a two photon absorption process. We believe that the proposed method may be applied to measure the TPACS of several metal ions, thereby opening a new avenue towards future analysis of two-photon absorption materials.
HDR Brachytherapy Dose Distribution is Influenced by the Metal Material of the Applicator
Authors: Wu Chin-Hui , Liao Yi-Jen , Shiau An-Cheng , Lin Hsin-Yu , Hsueh Liu Yen-Wan , Hsu Shih-Ming 
Published: December 2015

AbstractApplicators containing metal have been widely used in recent years when applying brachytherapy to patients with cervical cancer. However, the high dose rate (HDR) treatment-planning system (TPS) that is currently used in brachytherapy still assumes that the treatment environment constitutes a homogeneous water medium and does not include a dose correction for the metal material of the applicator. The primary purpose of this study was to evaluate the HDR 192Ir dose distribution in cervical cancer patients when performing brachytherapy using a metal-containing applicator. Thermoluminescent dosimeter (TLD) measurements and Monte Carlo N-Particle eXtended (MCNPX) code were used to explore the doses to the rectum and bladder when using a Henschke applicator containing metal during brachytherapy. When the applicator was assumed to be present, the absolute dose difference between the TLD measurement and MCNPX simulation values was within approximately 5%. A comparison of the MCNPX simulation and TPS calculation values revealed that the TPS overestimated the International Commission of Radiation Units and Measurement (ICRU) rectum and bladder reference doses by 57.78% and 49.59%, respectively. We therefore suggest that the TPS should be modified to account for the shielding effects of the applicator to ensure the accuracy of the delivered doses.