bluuebunny/crossref_metadata_2025_split huggingface dataset:
miR-302 regulates pluripotency, teratoma formation and differentiation in stem cells via an AKT1/OCT4-dependent manner
Authors: Li H-L , Wei J-F , Fan L-Y , Wang S-H , Zhu L , Li T-P , Lin G , Sun Y , Sun Z-J , Ding J , Liang X-L , Li J , Han Q , Zhao R-C-H 
Published: January 2016

AbstractPluripotency makes human pluripotent stem cells (hPSCs) promising for regenerative medicine, but the teratoma formation has been considered to be a major obstacle for their clinical applications. Here, we determined that the downregulation of miR-302 suppresses the teratoma formation, hampers the self-renewal and pluripotency, and promotes hPSC differentiation. The underlying mechanism is that the high endogenous expression of miR-302 suppresses the AKT1 expression by directly targeting its 3'UTR and subsequently maintains the pluripotent factor OCT4 at high level. Our findings reveal that miR-302 regulates OCT4 by suppressing AKT1, which provides hPSCs two characteristics related to their potential for clinical applications: the benefit of pluripotency and the hindrance of teratoma formation. More importantly, we demonstrate that miR-302 upregulation cannot lead OCT4 negative human adult mesenchymal stem cells (hMSCs) to acquire the teratoma formation in vivo. Whether miR-302 upregulation can drive hMSCs to acquire a higher differentiation potential is worthy of deep investigation.
MatP regulates the coordinated action of topoisomerase IV and MukBEF in chromosome segregation
Authors: Nolivos Sophie , Upton Amy L. , Badrinarayanan Anjana , Müller Julius , Zawadzka Katarzyna , Wiktor Jakub , Gill Amber , Arciszewska Lidia , Nicolas Emilien , Sherratt David 
Published: January 2016

AbstractThe Escherichia coli SMC complex, MukBEF, forms clusters of molecules that interact with the decatenase topisomerase IV and which are normally associated with the chromosome replication origin region (ori). Here we demonstrate an additional ATP-hydrolysis-dependent association of MukBEF with the replication termination region (ter). Consistent with this, MukBEF interacts with MatP, which binds matS sites in ter. MatP displaces wild-type MukBEF complexes from ter, thereby facilitating their association with ori, and limiting the availability of topoisomerase IV (TopoIV) at ter. Displacement of MukBEF is impaired when MukB ATP hydrolysis is compromised and when MatP is absent, leading to a stable association of ter and MukBEF. Impairing the TopoIV-MukBEF interaction delays sister ter segregation in cells lacking MatP. We propose that the interplay between MukBEF and MatP directs chromosome organization in relation to MukBEF clusters and associated topisomerase IV, thereby ensuring timely chromosome unlinking and segregation.
A mouse model for a partially inactive obesity-associated human MC3R variant
Authors: Lee Bonggi , Koo Jashin , Yun Jun Joo , Gavrilova Oksana , Lee Yongjun , Seo Arnold Y. , Taylor-Douglas Dezmond C. , Adler-Wailes Diane C. , Chen Faye , Gardner Ryan , Koutzoumis Dimitri , Sherafat Kazemzadeh Roya , Roberson Robin B. , Yanovski Jack A. 
Published: January 2016

AbstractWe previously reported children homozygous for two MC3R sequence variants (C17A+G241A) have greater fat mass than controls. Here we show, using homozygous knock-in mouse models in which we replace murine Mc3r with wild-type human (MC3RhWT/hWT) and double-mutant (C17A+G241A) human (MC3RhDM/hDM) MC3R, that MC3RhDM/hDM have greater weight and fat mass, increased energy intake and feeding efficiency, but reduced length and fat-free mass compared with MC3RhWT/hWT. MC3RhDM/hDM mice do not have increased adipose tissue inflammatory cell infiltration or greater expression of inflammatory markers despite their greater fat mass. Serum adiponectin levels are increased in MC3RhDM/hDM mice and MC3RhDM/hDM human subjects. MC3RhDM/hDM bone- and adipose tissue-derived mesenchymal stem cells (MSCs) differentiate into adipocytes that accumulate more triglyceride than MC3RhWT/hWT MSCs. MC3RhDM/hDM impacts nutrient partitioning to generate increased adipose tissue that appears metabolically healthy. These data confirm the importance of MC3R signalling in human metabolism and suggest a previously-unrecognized role for the MC3R in adipose tissue development.
Object Specific Trajectory Optimization for Industrial X-ray Computed Tomography
Authors: Fischer Andreas , Lasser Tobias , Schrapp Michael , Stephan Jürgen , Noël Peter B. 
Published: January 2016

AbstractIn industrial settings, X-ray computed tomography scans are a common tool for inspection of objects. Often the object can not be imaged using standard circular or helical trajectories because of constraints in space or time. Compared to medical applications the variance in size and materials is much larger. Adapting the acquisition trajectory to the object is beneficial and sometimes inevitable. There are currently no sophisticated methods for this adoption. Typically the operator places the object according to his best knowledge. We propose a detectability index based optimization algorithm which determines the scan trajectory on the basis of a CAD-model of the object. The detectability index is computed solely from simulated projections for multiple user defined features. By adapting the features the algorithm is adapted to different imaging tasks. Performance of simulated and measured data was qualitatively and quantitatively assessed.The results illustrate that our algorithm not only allows more accurate detection of features, but also delivers images with high overall quality in comparison to standard trajectory reconstructions. This work enables to reduce the number of projections and in consequence scan time by introducing an optimization algorithm to compose an object specific trajectory.
Ligand selectivity in tachykinin and natalisin neuropeptidergic systems of the honey bee parasitic mite Varroa destructor
Authors: Jiang Hongbo , Kim Donghun , Dobesh Sharon , Evans Jay D. , Nachman Ronald J. , Kaczmarek Krzysztof , Zabrocki Janusz , Park Yoonseong 
Published: January 2016

AbstractThe varroa mite, Varroa destructor, is a devastating ectoparasite of the honey bees Apis mellifera and A. cerana. Control of these mites in beehives is a challenge in part due to the lack of toxic agents that are specific to mites and not to the host honey bee. In searching for a specific toxic target of varroa mites, we investigated two closely related neuropeptidergic systems, tachykinin-related peptide (TRP) and natalisin (NTL) and their respective receptors. Honey bees lack both NTL and the NTL receptor in their genome sequences, providing the rationale for investigating these receptors to understand their specificities to various ligands. We characterized the receptors for NTL and TRP of V. destructor (VdNTL-R and VdTRP-R, respectively) and for TRP of A. mellifera (AmTRP-R) in a heterologous reporter assay system to determine the activities of various ligands including TRP/NTL peptides and peptidomimetics. Although we found that AmTRP-R is highly promiscuous, activated by various ligands including two VdNTL peptides when a total of 36 ligands were tested, we serendipitously found that peptides carrying the C-terminal motif -FWxxRamide are highly specific to VdTRP-R. This motif can serve as a seed sequence for designing a VdTRP-R-specific agonist.
Heating-Rate-Triggered Carbon-Nanotube-based 3-Dimensional Conducting Networks for a Highly Sensitive Noncontact Sensing Device
Authors: Tai Yanlong , Lubineau Gilles 
Published: January 2016

AbstractRecently, flexible and transparent conductive films (TCFs) are drawing more attention for their central role in future applications of flexible electronics. Here, we report the controllable fabrication of TCFs for moisture-sensing applications based on heating-rate-triggered, 3-dimensional porous conducting networks through drop casting lithography of single-walled carbon nanotube (SWCNT)/poly(3,4-ethylenedioxythiophene)-polystyrene sulfonate (PEDOT:PSS) ink. How ink formula and baking conditions influence the self-assembled microstructure of the TCFs is discussed. The sensor presents high-performance properties, including a reasonable sheet resistance (2.1 kohm/sq), a high visible-range transmittance (>69%, PET = 90%) and good stability when subjected to cyclic loading (>1000 cycles, better than indium tin oxide film) during processing, when formulation parameters are well optimized (weight ratio of SWCNT to PEDOT:PSS: 1:0.5, SWCNT concentration: 0.3 mg/ml and heating rate: 36 °C/minute). Moreover, the benefits of these kinds of TCFs were verified through a fully transparent, highly sensitive, rapid response, noncontact moisture-sensing device (5 × 5 sensing pixels).
Magnetic Ordering in Sr3YCo4O10+x
Authors: Kishida Takayoshi , Kapetanakis Myron D. , Yan Jiaqiang , Sales Brian C. , Pantelides Sokrates T. , Pennycook Stephen J. , Chisholm Matthew F. 
Published: January 2016

AbstractTransition-metal oxides often exhibit complex magnetic behavior due to the strong interplay between atomic-structure, electronic and magnetic degrees of freedom. Cobaltates, especially, exhibit complex behavior because of cobalt’s ability to adopt various valence and spin state configurations. The case of the oxygen-deficient perovskite Sr3YCo4O10+x (SYCO) has attracted considerable attention because of persisting uncertainties about its structure and the origin of the observed room temperature ferromagnetism. Here we report a combined investigation of SYCO using aberration-corrected scanning transmission electron microscopy and density functional theory calculations. Guided by theoretical results on Co-O distances projected on different planes, the atomic-scale images of several different orientations, especially of the fully oxygenated planes, allow the unambiguous extraction of the underlying structure. The calculated magnetic properties of the new structure are in excellent agreement with the experimental data.
A quantitative analysis of hydraulic interaction processes in stream-aquifer systems
Authors: Wang Wenke , Dai Zhenxue , Zhao Yaqian , Li Junting , Duan Lei , Wang Zhoufeng , Zhu Lin 
Published: January 2016

AbstractThe hydraulic relationship between the stream and aquifer can be altered from hydraulic connection to disconnection when the pumping rate exceeds the maximum seepage flux of the streambed. This study proposes to quantitatively analyze the physical processes of stream-aquifer systems from connection to disconnection. A free water table equation is adopted to clarify under what conditions a stream starts to separate hydraulically from an aquifer. Both the theoretical analysis and laboratory tests have demonstrated that the hydraulic connectedness of the stream-aquifer system can reach a critical disconnection state when the horizontal hydraulic gradient at the free water surface is equal to zero and the vertical is equal to 1. A boundary-value problem for movement of the critical point of disconnection is established for an analytical solution of the inverted water table movement beneath the stream. The result indicates that the maximum distance or thickness of the inverted water table is equal to the water depth in the stream and at a steady state of disconnection, the maximum hydraulic gradient at the streambed center is 2. This study helps us to understand the hydraulic phenomena of water flow near streams and accurately assess surface water and groundwater resources.
Global transcriptomic responses of Escherichia coli K-12 to volatile organic compounds
Authors: Yung Pui Yi , Lo Grasso Letizia , Mohidin Abeed Fatima , Acerbi Enzo , Hinks Jamie , Seviour Thomas , Marsili Enrico , Lauro Federico M. 
Published: January 2016

AbstractVolatile organic compounds (VOCs) are commonly used as solvents in various industrial settings. Many of them present a challenge to receiving environments, due to their toxicity and low bioavailability for degradation. Microorganisms are capable of sensing and responding to their surroundings and this makes them ideal detectors for toxic compounds. This study investigates the global transcriptomic responses of Escherichia coli K-12 to selected VOCs at sub-toxic levels. Cells grown in the presence of VOCs were harvested during exponential growth, followed by whole transcriptome shotgun sequencing (RNAseq). The analysis of the data revealed both shared and unique genetic responses compared to cells without exposure to VOCs. Results suggest that various functional gene categories, for example, those relating to Fe/S cluster biogenesis, oxidative stress responses and transport proteins, are responsive to selected VOCs in E. coli. The differential expression (DE) of genes was validated using GFP-promoter fusion assays. A variety of genes were differentially expressed even at non-inhibitory concentrations and when the cells are at their balanced-growth. Some of these genes belong to generic stress response and others could be specific to VOCs. Such candidate genes and their regulatory elements could be used as the basis for designing biosensors for selected VOCs.
Predictability of the dispersion of Fukushima-derived radionuclides and their homogenization in the atmosphere
Authors: Mészáros Róbert , Leelőssy Ádám , Kovács Tibor , Lagzi István 
Published: January 2016

AbstractLong-range simulation of the dispersion of air pollutants in the atmosphere is one of the most challenging tasks in geosciences. Application of precise and fast numerical models in risk management and decision support can save human lives and can diminish consequences of an accidental release. Disaster at Fukushima Daiichi nuclear power plant has been the most serious event in the nuclear technology and industry in the recent years. We present and discuss the results of the numerical simulations on dispersion of Fukushima-derived particulate 131I and 137Cs using a global scale Lagrangian particle model. We compare concentrations and arrival times, using two emission scenarios, with the measured data obtained from 182 monitoring stations located all over the Northern Hemisphere. We also investigate the homogenization of isotopes in the atmosphere. Peak concentrations were predicted with typical accuracy of one order of magnitude showing a general underestimation in the case of 131I but not for 137Cs. Tropical and Arctic plumes, as well as the early detections in American and European midlatitudes were generally well predicted, however, the later regional-scale mixing could not be captured by the model. Our investigation highlights the importance of the parameterization of free atmospheric turbulence.
Tunable exchange bias in dilute magnetic alloys – chiral spin glasses
Authors: Hudl Matthias , Mathieu Roland , Nordblad Per 
Published: January 2016

AbstractA unidirectional anisotropy appears in field cooled samples of dilute magnetic alloys at temperatures well below the cusp temperature of the zero field cooled magnetization curve. Magnetization measurements on a Cu(13.5 at% Mn) sample show that this anisotropy is essentially temperature independent and acts on a temperature dependent excess magnetization, ΔM. The anisotropy can be partially or fully transferred from being locked to the direction of the cooling field at lower fields to becoming locked to the direction of ΔM at larger fields, thus instead appearing as a uniaxial anisotropy. This introduces a deceiving division of the anisotropy into a superposition of a unidirectional and a uniaxial part. This two faced nature of the anisotropy has been empirically scrutinized and concluded to originate from one and the same exchange mechanism: the Dzyaloshinsky-Moriya interaction.
Ferroelectricity and Self-Polarization in Ultrathin Relaxor Ferroelectric Films
Authors: Miao Peixian , Zhao Yonggang , Luo Nengneng , Zhao Diyang , Chen Aitian , Sun Zhong , Guo Meiqi , Zhu Meihong , Zhang Huiyun , Li Qiang 
Published: January 2016

AbstractWe report ferroelectricity and self-polarization in the (001) oriented ultrathin relaxor ferroelectric PMN-PT films grown on Nb-SrTiO3, SrRuO3 and La0.7Sr0.3MnO3, respectively. Resistance-voltage measurements and AC impedance analysis suggest that at high temperatures Schottky depletion width in a 4 nm thick PMN-PT film deposited on Nb-SrTiO3 is smaller than the film thickness. We propose that Schottky interfacial dipoles make the dipoles of the nanometer-sized polar nanoregions (PNRs) in PMN-PT films grown on Nb-SrTiO3 point downward at high temperatures and lead to the self-polarization at room temperature with the assistance of in-plane compressive strain. This work sheds light on the understanding of epitaxial strain effects on relaxor ferroelectric films and self-polarization mechanism.
Energy and structure of bonds in the interaction of organic anions with layered double hydroxide nanosheets: A molecular dynamics study
Authors: Tsukanov A.A. , Psakhie S.G. 
Published: January 2016

AbstractThe application of hybrid and hierarchical nanomaterials based on layered hydroxides and oxyhydroxides of metals is a swiftly progressing field in biomedicine. Layered double hydroxides (LDH) possess a large specific surface area, significant surface electric charge and biocompatibility. Their physical and structural properties enable them to adsorb various kinds of anionic species and to transport them into cells. However, possible side effects resulting from the interaction of LDH with anions of the intercellular and intracellular medium need to be considered, since such interaction can potentially disrupt ion transport, signaling processes, apoptosis, nutrition and proliferation of living cells. In the present paper molecular dynamics is used to determine the energies of interaction of organic anions (aspartic acid, glutamic acid and bicarbonate) with a fragment of layered double hydroxide Mg/Al-LDH. The average number of hydrogen bonds between the anions and the hydroxide surface and characteristic binding configurations are determined. Possible effects of LDH on the cell resulting from binding of protein fragments and replacement of native intracellular anions with delivered anions are considered.
Arbuscular mycorrhizal fungi regulate soil respiration and its response to precipitation change in a semiarid steppe
Authors: Zhang Bingwei , Li Shan , Chen Shiping , Ren Tingting , Yang Zhiqiang , Zhao Hanlin , Liang Yu , Han Xingguo 
Published: January 2016

AbstractArbuscular mycorrhizal fungi (AMF) are critical links in plant–soil continuum and play a critical role in soil carbon cycles. Soil respiration, one of the largest carbon fluxes in global carbon cycle, is sensitive to precipitation change in semiarid ecosystems. In this study, a field experiment with fungicide application and water addition was conducted during 2010–2013 in a semiarid steppe in Inner Mongolia, China and soil respiration was continuously measured to investigate the influences of AMF on soil respiration under different precipitation regimes. Results showed that soil respiration was promoted by water addition treatment especially during drought seasons, which induced a nonlinear response of soil respiration to precipitation change. Fungicide application suppressed AMF root colonization without impacts on soil microbes. AMF suppression treatment accelerated soil respiration with 2.7, 28.5 and 37.6 g C m−2across three seasons, which were mainly caused by the enhanced heterotrophic component. A steeper response of soil respiration rate to precipitation was found under fungicide application treatments, suggesting a greater dampening effect of AMF on soil carbon release as water availability increased. Our study highlighted the importance of AMF on soil carbon stabilization and sequestration in semiarid steppe ecosystems especially during wet seasons.
Chrysanthemum transcription factor CmLBD1 direct lateral root formation in Arabidopsis thaliana
Authors: Zhu Lu , Zheng Chen , Liu Ruixia , Song Aiping , Zhang Zhaohe , Xin Jingjing , Jiang Jiafu , Chen Sumei , Zhang Fei , Fang Weimin , Chen Fadi 
Published: January 2016

AbstractThe plant-specific LATERAL ORGAN BOUNDARIES DOMAIN (LBD) genes are important regulators of growth and development. Here, a chrysanthemum class I LBD transcription factor gene, designated CmLBD1, was isolated and its function verified. CmLBD1 was transcribed in both the root and stem, but not in the leaf. The gene responded to auxin and was shown to participate in the process of adventitious root primordium formation. Its heterologous expression in Arabidopsis thaliana increased the number of lateral roots formed. When provided with exogenous auxin, lateral root emergence was promoted. CmLBD1 expression also favored callus formation from A. thaliana root explants in the absence of exogenously supplied phytohormones. In planta, CmLBD1 probably acts as a positive regulator of the response to auxin fluctuations and connects auxin signaling with lateral root formation.
A non-inheritable maternal Cas9-based multiple-gene editing system in mice
Authors: Sakurai Takayuki , Kamiyoshi Akiko , Kawate Hisaka , Mori Chie , Watanabe Satoshi , Tanaka Megumu , Uetake Ryuichi , Sato Masahiro , Shindo Takayuki 
Published: January 2016

AbstractThe CRISPR/Cas9 system is capable of editing multiple genes through one-step zygote injection. The preexisting method is largely based on the co-injection of Cas9 DNA (or mRNA) and guide RNAs (gRNAs); however, it is unclear how many genes can be simultaneously edited by this method and a reliable means to generate transgenic (Tg) animals with multiple gene editing has yet to be developed. Here, we employed non-inheritable maternal Cas9 (maCas9) protein derived from Tg mice with systemic Cas9 overexpression (Cas9 mice). The maCas9 protein in zygotes derived from mating or in vitro fertilization of Tg/+ oocytes and +/+ sperm could successfully edit the target genome. The efficiency of such maCas9-based genome editing was comparable to that of zygote microinjection–based genome editing widely used at present. Furthermore, we demonstrated a novel approach to create “Cas9 transgene-free” gene-modified mice using non-Tg (+/+) zygotes carrying maCas9. The maCas9 protein in mouse zygotes edited nine target loci simultaneously after injection with nine different gRNAs alone. Cas9 mouse-derived zygotes have the potential to facilitate the creation of genetically modified animals carrying the Cas9 transgene, enabling repeatable genome engineering and the production of Cas9 transgene-free mice.
Female reproductive competition explains variation in prenatal investment in wild banded mongooses
Authors: Inzani Emma L. , Marshall Harry H. , Sanderson Jennifer L. , Nichols Hazel J. , Thompson Faye J. , Kalema-Zikusoka Gladys , Hodge Sarah J. , Cant Michael A. , Vitikainen Emma I. K. 
Published: January 2016

AbstractFemale intrasexual competition is intense in cooperatively breeding species where offspring compete locally for resources and helpers. In mammals, females have been proposed to adjust prenatal investment according to the intensity of competition in the postnatal environment (a form of ‘predictive adaptive response’; PAR). We carried out a test of this hypothesis using ultrasound scanning of wild female banded mongooses in Uganda. In this species multiple females give birth together to a communal litter and all females breed regularly from one year old. Total prenatal investment (size times the number of fetuses) increased with the number of potential female breeders in the group. This relationship was driven by fetus size rather than number. The response to competition was particularly strong in low weight females and when ecological conditions were poor. Increased prenatal investment did not trade off against maternal survival. In fact we found the opposite relationship: females with greater levels of prenatal investment had elevated postnatal maternal survival. Our results support the hypothesis that mammalian prenatal development is responsive to the intensity of postnatal competition. Understanding whether these responses are adaptive requires information on the long-term consequences of prenatal investment for offspring fitness.