bluuebunny/crossref_metadata_2025_split huggingface dataset:
A cell cycle-independent mode of the Rad9-Dpb11 interaction is induced by DNA damage
Authors: di Cicco Giulia , Bantele Susanne C. S. , Reusswig Karl-Uwe , Pfander Boris 
Published: September 2017

AbstractBudding yeast Rad9, like its orthologs, controls two aspects of the cellular response to DNA double strand breaks (DSBs) – signalling of the DNA damage checkpoint and DNA end resection. Rad9 binds to damaged chromatin via modified nucleosomes independently of the cell cycle phase. Additionally, Rad9 engages in a cell cycle-regulated interaction with Dpb11 and the 9-1-1 clamp, generating a second pathway that recruits Rad9 to DNA damage sites. Binding to Dpb11 depends on specific S/TP phosphorylation sites of Rad9, which are modified by cyclin-dependent kinase (CDK). Here, we show that these sites additionally become phosphorylated upon DNA damage. We define the requirements for DNA damage-induced S/TP phosphorylation of Rad9 and show that it is independent of the cell cycle or CDK activity but requires prior recruitment of Rad9 to damaged chromatin, indicating that it is catalysed by a chromatin-bound kinase. The checkpoint kinases Mec1 and Tel1 are required for Rad9 S/TP phosphorylation, but their influence is likely indirect and involves phosphorylation of Rad9 at S/TQ sites. Notably, DNA damage-induced S/TP phosphorylation triggers Dpb11 binding to Rad9, but the DNA damage-induced Rad9-Dpb11 interaction is dispensable for recruitment to DNA damage sites, indicating that the Rad9-Dpb11 interaction functions beyond Rad9 recruitment.
A NMDA-receptor calcium influx assay sensitive to stimulation by glutamate and glycine/D-serine
Authors: Guo Hongqiu , Camargo L. Miguel , Yeboah Fred , Digan Mary Ellen , Niu Honglin , Pan Yue , Reiling Stephan , Soler-Llavina Gilberto , Weihofen Wilhelm A. , Wang Hao-Ran , Shanker Y. Gopi , Stams Travis , Bill Anke 
Published: September 2017

AbstractN-methyl-D-aspartate-receptors (NMDARs) are ionotropic glutamate receptors that function in synaptic transmission, plasticity and cognition. Malfunction of NMDARs has been implicated in a variety of nervous system disorders, making them attractive therapeutic targets. Overexpression of functional NMDAR in non-neuronal cells results in cell death by excitotoxicity, hindering the development of cell-based assays for NMDAR drug discovery. Here we report a plate-based, high-throughput approach to study NMDAR function. Our assay enables the functional study of NMDARs with different subunit composition after activation by glycine/D-serine or glutamate and hence presents the first plate-based, high throughput assay that allows for the measurement of NMDAR function in glycine/D-serine and/or glutamate sensitive modes. This allows to investigate the effect of small molecule modulators on the activation of NMDARs at different concentrations or combinations of the co-ligands. The reported assay system faithfully replicates the pharmacology of the receptor in response to known agonists, antagonists, positive and negative allosteric modulators, as well as the receptor’s sensitivity to magnesium and zinc. We believe that the ability to study the biology of NMDARs rapidly and in large scale screens will enable the identification of novel therapeutics whose discovery has otherwise been hindered by the limitations of existing cell based approaches.
Gene Expression and Methylation Analyses Suggest DCTD as a Prognostic Factor in Malignant Glioma
Authors: Hu Huimin , Wang Zheng , Li Mingyang , Zeng Fan , Wang Kuanyu , Huang Ruoyu , Wang Haoyuan , Yang Fan , Liang Tingyu , Huang Hua , Jiang Tao 
Published: September 2017

AbstractMalignant glioma is the most common brain cancer with dismal outcomes. Individual variation of the patients’ survival times is remarkable. Here, we investigated the transcriptome and promoter methylation differences between patients of malignant glioma with short (less than one year) and the patients with long (more than three years) survival in CGGA (Chinese Glioma Genome Atlas), and validated the differences in TCGA (The Cancer Genome Atlas) to identify the genes whose expression levels showed high concordance with prognosis of glioma patients, as well as played an important role in malignant progression. The gene coding a key enzyme in genetic material synthesis, dCMP deaminase (DCTD), was found to be significantly correlated with overall survival and high level of DCTD mRNA indicated shorter survival of the patients with malignant glioma in different databases. Our finding revealed DCTD as an efficient prognostic factor for malignant glioma. As DCTD inhibitor gemcitabine has been proposed as an adjuvant therapy for malignant glioma, our finding also suggests a therapeutic value of gemcitabine for the patients with high expression level of DCTD.
Graphite Oxide Improves Adhesion and Water Resistance of Canola Protein–Graphite Oxide Hybrid Adhesive
Authors: Bandara Nandika , Esparza Yussef , Wu Jianping 
Published: September 2017

AbstractProtein derived adhesives are extensively explored as a replacement for synthetic ones, but suffers from weak adhesion and water resistance. Graphite oxide (GO) has been extensively used in nanocomposites, but not in adhesives applications. The objectives of this study were to prepare functionally improved protein adhesive by exfoliating GO with different oxidation levels, and to determine the effect of GO on adhesion mechanism. GO were prepared by oxidizing graphite for 0.5, 2, and 4 h (GO-A, GO-B and GO-C, respectively). Increasing oxidation time decreased C/O ratio; while the relative proportion of C-OH, and C = O groups initially increased up to 2 h of oxidation, but reduced upon further oxidation. Canola protein-GO hybrid adhesive (CPA-GO) was prepared by exfoliating GO at a level of 1% (w/w). GO significantly increased (p < 0.05) adhesion; where GO-B addition showed the highest dry, and wet strength of 11.67 ± 1.00, and 4.85 ± 0.61 MPa, respectively. The improvements in adhesion was due to the improved exfoliation of GO, improved adhesive and cohesive interactions, increased hydrogen bonding, increased hydrophobic interactions and thermal stability of CPA-GO. GO, as we proposed for the first time is easier to process and cost-effective in preparing protein-based adhesives with significantly improved functionalities.
Photoelectrolysis Using Type-II Semiconductor Heterojunctions
Authors: Harrison S. , Hayne M. 
Published: September 2017

AbstractThe solar-powered production of hydrogen for use as a renewable fuel is highly desirable for the world’s future energy infrastructure. However, difficulties in achieving reasonable efficiencies, and thus cost-effectiveness, have hampered significant research progress. Here we propose the use of semiconductor nanostructures to create a type-II heterojunction at the semiconductor–water interface in a photoelectrochemical cell (PEC) and theoretically investigate it as a method of increasing the maximum photovoltage such a cell can generate under illumination, with the aim of increasing the overall cell efficiency. A model for the semiconductor electrode in a PEC is created, which solves the Schrödinger, Poisson and drift–diffusion equations self-consistently. From this, it is determined that ZnO quantum dots on bulk n-InGaN with low In content x is the most desirable system, having electron-accepting and -donating states straddling the oxygen- and hydrogen-production potentials for x < 0.26, though large variance in literature values for certain material parameters means large uncertainties in the model output. Accordingly, results presented here should form the basis for further experimental work, which will in turn provide input to refine and develop the model.
Hydrogeochemical changes before and during the 2016 Amatrice-Norcia seismic sequence (central Italy)
Authors: Barberio Marino Domenico , Barbieri Maurizio , Billi Andrea , Doglioni Carlo , Petitta Marco 
Published: September 2017

AbstractSeismic precursors are an as yet unattained frontier in earthquake studies. With the aim of making a step towards this frontier, we present a hydrogeochemical dataset associated with the 2016 Amatrice-Norcia seismic sequence (central Apennines, Italy), developed from August 24th, with an Mw 6.0 event, and culminating on October 30th, with an Mw 6.5 mainshock. The seismic sequence occurred during a seasonal depletion of hydrostructures, and the four strongest earthquakes (Mw ≥ 5.5) generated an abrupt uplift of the water level, recorded up to 100 km away from the mainshock area. Monitoring a set of selected springs in the central Apennines, a few hydrogeochemical anomalies were observed months before the onset of the seismic swarm, including a variation of pH values and an increase of As, V, and Fe concentrations. Cr concentrations increased immediately after the onset of the seismic sequence. On November 2016, these elements recovered to their usual low concentrations. We interpret these geochemical anomalies as reliable seismic precursors for a dilational tectonic setting.
Biomimetic Silica Nanoparticles Prepared by a Combination of Solid-Phase Imprinting and Ostwald Ripening
Authors: Piletska Elena , Yawer Heersh , Canfarotta Francesco , Moczko Ewa , Smolinska-Kempisty Katarzyna , Piletsky Stanislav S. , Guerreiro Antonio , Whitcombe Michael J. , Piletsky Sergey A. 
Published: September 2017

AbstractHerein we describe the preparation of molecularly imprinted silica nanoparticles by Ostwald ripening in the presence of molecular templates immobilised on glass beads (the solid-phase). To achieve this, a seed material (12 nm diameter silica nanoparticles) was incubated in phosphate buffer in the presence of the solid-phase. Phosphate ions act as a catalyst in the ripening process which is driven by differences in surface energy between particles of different size, leading to the preferential growth of larger particles. Material deposited in the vicinity of template molecules results in the formation of sol-gel molecular imprints after around 2 hours. Selective washing and elution allows the higher affinity nanoparticles to be isolated. Unlike other strategies commonly used to prepare imprinted silica nanoparticles this approach is extremely simple in nature and can be performed under physiological conditions, making it suitable for imprinting whole proteins and other biomacromolecules in their native conformations. We have demonstrated the generic nature of this method by preparing imprinted silica nanoparticles against targets of varying molecular mass (melamine, vancomycin and trypsin). Binding to the imprinted particles was demonstrated in an immunoassay (ELISA) format in buffer and complex media (milk or blood plasma) with sub-nM detection ability.
Preserved immune functionality and high CMV-specific T-cell responses in HIV-infected individuals with poor CD4+ T-cell immune recovery
Authors: Gómez-Mora Elisabet , García Elisabet , Urrea Victor , Massanella Marta , Puig Jordi , Negredo Eugenia , Clotet Bonaventura , Blanco Julià , Cabrera Cecilia 
Published: September 2017

AbstractPoor CD4+ T-cell recovery after cART has been associated with skewed T-cell maturation, inflammation and immunosenescence; however, T-cell functionality in those individuals has not been fully characterized. In the present study, we assessed T-cell function by assessing cytokine production after polyclonal, CMV and HIV stimulations of T-cells from ART-suppressed HIV-infected individuals with CD4+ T-cell counts >350 cells/μL (immunoconcordants) or <350 cells/μL (immunodiscordants). A group of HIV-uninfected individuals were also included as controls. Since CMV co-infection significantly affected T-cell maturation and polyfunctionality, only CMV+ individuals were analyzed. Despite their reduced and skewed CD4+ T-cell compartment, immunodiscordant individuals showed preserved polyclonal and HIV-specific responses. However, CMV response in immunodiscordant participants was significantly different from immunoconcordant or HIV-seronegative individuals. In immunodiscordant subjects, the magnitude of IFN-γ+ CD8+ and IL-2+ CD4+ T-cells in response to CMV was higher and differently associated with the CD4+ T-cell maturation profile., showing an increased frequency of naïve, central memory and EMRA CMV-specific CD4+ T-cells. In conclusion, CD4+ and CD8+ T-cell polyfunctionality was not reduced in immunodiscordant individuals, although heightened CMV-specific immune responses, likely related to subclinical CMV reactivations, may be contributing to the skewed T-cell maturation and the higher risk of clinical progression observed in those individuals.
Alternative splicing complexity contributes to genetic improvement of drought resistance in the rice maintainer HuHan2B
Authors: Wei Haibin , Lou Qiaojun , Xu Kai , Yan Ming , Xia Hui , Ma Xiaosong , Yu Xinqiao , Luo Lijun 
Published: September 2017

AbstractWater-saving and drought-resistantce rice (WDR) breeding practices have greatly increased grain yield and drought resistance. To study the genetic basis of adaptation to drought, transcriptome sequences from the WDR maintainer line HuHan2B and the recurrent parent HanFengB were analyzed for alternative splicing (AS) complexity. Intron retention, the dominant AS type, accounted for 42% of the observed AS events. Differential expression analysis revealed transcripts were preferentially expressed in different varieties and conditions. Based on gene ontology predictions, the biological functions of drought-induced transcripts were significantly enriched in genes involved in transcription regulation, chloroplast components and response to abiotic stimulus in HuHan2B, whereas developmental processes for reproduction were primarily enriched in HanFengB. The regulatory network of transcription factors was driven by cohorts of transcript splicing targets, resulting in more diversified regulatory relationships due to AS complexity than in our previous findings. Moreover, several genes were validated to accumulate novel splicing transcripts in a drought-induced manner. Together, these results suggest that HuHan2B and HanFengB share similar AS features but that a subset of genes with increased levels of AS involved in transcription regulatory networks may contribute an additional level of control for genetic improvement of drought resistance in rice maintainer HuHan2B through breeding.
The effects of domestication and ontogeny on cognition in dogs and wolves
Authors: Lampe Michelle , Bräuer Juliane , Kaminski Juliane , Virányi Zsófia 
Published: September 2017

AbstractCognition is one of the most flexible tools enabling adaptation to environmental variation. Living close to humans is thought to influence social as well as physical cognition of animals throughout domestication and ontogeny. Here, we investigated to what extent physical cognition and two domains of social cognition of dogs have been affected by domestication and ontogeny. To address the effects of domestication, we compared captive wolves (n = 12) and dogs (n = 14) living in packs under the same conditions. To explore developmental effects, we compared these dogs to pet dogs (n = 12) living in human families. The animals were faced with a series of object-choice tasks, in which their response to communicative, behavioural and causal cues was tested. We observed that wolves outperformed dogs in their ability to follow causal cues, suggesting that domestication altered specific skills relating to this domain, whereas developmental effects had surprisingly no influence. All three groups performed similarly in the communicative and behavioural conditions, suggesting higher ontogenetic flexibility in the two social domains. These differences across cognitive domains need to be further investigated, by comparing domestic and non-domesticated animals living in varying conditions.
PTPRJ Inhibits Leptin Signaling, and Induction of PTPRJ in the Hypothalamus Is a Cause of the Development of Leptin Resistance
Authors: Shintani Takafumi , Higashi Satoru , Suzuki Ryoko , Takeuchi Yasushi , Ikaga Reina , Yamazaki Tomomi , Kobayashi Kenta , Noda Masaharu 
Published: September 2017

AbstractLeptin signaling in the hypothalamus plays a crucial role in the regulation of body weight. Leptin resistance, in which leptin signaling is disrupted, is a major obstacle to the improvement of obesity. We herein demonstrated that protein tyrosine phosphatase receptor type J (Ptprj) is expressed in hypothalamic neurons together with leptin receptors, and that PTPRJ negatively regulates leptin signaling by inhibiting the activation of JAK2, the primary tyrosine kinase in leptin signaling, through the dephosphorylation of Y813 and Y868 in JAK2 autophosphorylation sites. Leptin signaling is enhanced in Ptprj-deficient mice, and they exhibit lower weight gain than wild-type mice because of a reduced food intake. Diet-induced obesity and the leptin treatment up-regulated PTPRJ expression in the hypothalamus, while the overexpression of PTPRJ induced leptin resistance. Thus, the induction of PTPRJ is a factor contributing to the development of leptin resistance, and the inhibition of PTPRJ may be a potential strategy for improving obesity.
Early maternal mirroring predicts infant motor system activation during facial expression observation
Authors: Rayson Holly , Bonaiuto James John , Ferrari Pier Francesco , Murray Lynne 
Published: September 2017

AbstractProcessing facial expressions is an essential component of social interaction, especially for preverbal infants. In human adults and monkeys, this process involves the motor system, with a neural matching mechanism believed to couple self- and other-generated facial gestures. Here, we used electroencephalography to demonstrate recruitment of the human motor system during observation and execution of facial expressions in nine-month-old infants, implicating this system in facial expression processing from a very young age. Notably, examination of early video-recorded mother-infant interactions supported the common, but as yet untested, hypothesis that maternal mirroring of infant facial gestures is central to the development of a neural matching mechanism for these gestures. Specifically, the extent to which mothers mirrored infant facial expressions at two months postpartum predicted infant motor system activity during observation of the same expressions at nine months. This suggests that maternal mirroring strengthens mappings between visual and motor representations of facial gestures, which increases infant neural sensitivity to particularly relevant cues in the early social environment.
Accumulation of minor alleles and risk prediction in schizophrenia
Authors: He Pei , Lei Xiaoyun , Yuan Dejian , Zhu Zuobin , Huang Shi 
Published: September 2017

AbstractSchizophrenia is a common neuropsychiatric disorder with a lifetime risk of 1%. Accumulation of common polygenic variations has been found to be an important risk factor. Recent studies showed a role for the enrichment of minor alleles (MAs) of SNPs in complex diseases such as Parkinson’s disease. Here we similarly studied the role of genome wide MAs in schizophrenia using public datasets. Relative to matched controls, schizophrenia cases showed higher average values in minor allele content (MAC) or the average amount of MAs per subject. By risk prediction analysis based on weighted genetic risk score (wGRS) of MAs, we identified an optimal MA set consisting of 23 238 variants that could be used to predict 3.14% of schizophrenia cases, which is comparable to using 22q11 deletion to detect schizophrenia cases. Pathway enrichment analysis of these SNPs identified 30 pathways with false discovery rate (FDR) <0.02 and of significant P-value, most of which are known to be linked with schizophrenia and other neurological disorders. These results suggest that MAs accumulation may be a risk factor to schizophrenia and provide a method to genetically screen for this disease.
Hormetic potential of methylglyoxal, a side-product of glycolysis, in switching tumours from growth to death
Authors: Nokin Marie-Julie , Durieux Florence , Bellier Justine , Peulen Olivier , Uchida Koji , Spiegel David A. , Cochrane James R. , Hutton Craig A. , Castronovo Vincent , Bellahcène Akeila 
Published: September 2017

AbstractMetabolic reprogramming toward aerobic glycolysis unavoidably favours methylglyoxal (MG) and advanced glycation end products (AGEs) formation in cancer cells. MG was initially considered a highly cytotoxic molecule with potential anti-cancer value. However, we have recently demonstrated that MG enhanced tumour growth and metastasis. In an attempt to understand this dual role, we explored MG-mediated dicarbonyl stress status in four breast and glioblastoma cancer cell lines in relation with their glycolytic phenotype and MG detoxifying capacity. In glycolytic cancer cells cultured in high glucose, we observed a significant increase of the conversion of MG to D-lactate through the glyoxalase system. Moreover, upon exogenous MG challenge, glycolytic cells showed elevated amounts of intracellular MG and induced de novo GLO1 detoxifying enzyme and Nrf2 expression. Thus, supporting the adaptive nature of glycolytic cancer cells to MG dicarbonyl stress when compared to non-glycolytic ones. Finally and consistent with the pro-tumoural role of MG, we showed that low doses of MG induced AGEs formation and tumour growth in vivo, both of which can be reversed using a MG scavenger. Our study represents the first demonstration of a hormetic effect of MG defined by a low-dose stimulation and a high-dose inhibition of tumour growth.
Challenges and Opportunities in Reading Instruction for Children with Limited Speech
Authors: Barton-Hulsey Andrea 
Published: September 2017

AbstractThe ability to read has implications for communication development for individuals who use augmentative and alternative communication (AAC) systems. Access to print for generative language provides a flexible system in which an individual can create novel messages and interact with his or her family, friends, and peers. Several challenges in reading instruction inherently exist for individuals who have limitations in speech ability. Reading instruction is becoming increasingly more accessible with current advances in technology; however, several challenges remain regarding the creation of accessible learning environments, assessment tools, and reading intervention strategies for children with limited speech. The current article provides an overview of the role of the speech-language pathologist in reading instruction and particularly addresses children's need for more experience with instruction in phonological awareness and decoding, an area that has presented the greatest challenge in access to reading instruction for individuals who use AAC. Several considerations are presented to increase access to instruction with directions for future research highlighted.
Using Digital Texts in Interactive Reading Activities for Children with Language Delays and Disorders: A Review of the Research Literature and Pilot Study
Authors: McCoy Ashley , McNaughton David , Light Janice , Boyle Susannah 
Published: September 2017

AbstractParticipation in interactive reading activities can help children with language delays and disorders build important early language and literacy skills. Digital texts (i.e., books presented on tablets and computers) provide new opportunities for learning and supporting communication. Recently, researchers have investigated the use of digital texts that include visual scene displays (VSDs). In this approach, pictures on a tablet are programmed with “hotspots”; when the picture is touched, a word is spoken aloud. In addition, transition to literacy (T2L) features, including dynamic presentation of the text when a hotspot is activated, can be implemented with VSDs. This article provides a review of interactive reading interventions with children with language delays and disorders, and a discussion of the impact of using digital texts. We also describe the results of a pilot study intervention using digital texts including VSDs and T2L features with children with language delays in an inclusive preschool setting.