bluuebunny/crossref_metadata_2025_split huggingface dataset:
Action observation: the less-explored part of higher-order vision
Authors: Platonov Artem , Orban Guy A. 
Published: November 2016

AbstractLittle is presently known about action observation, an important perceptual component of high-level vision. To investigate this aspect of perception, we introduce a two-alternative forced-choice task for observed manipulative actions while varying duration or signal strength by noise injection. We show that accuracy and reaction time in this task can be modeled by a diffusion process for different pairs of action exemplars. Furthermore, discrimination of observed actions is largely viewpoint-independent, cannot be reduced to judgments about the basic components of action: shape and local motion, and requires a minimum duration of about 150–200 ms. These results confirm that action observation is a distinct high-level aspect of visual perception based on temporal integration of visual input generated by moving body parts. This temporal integration distinguishes it from object or scene perception, which require only very brief presentations and are viewpoint-dependent. The applicability of a diffusion model suggests that these aspects of high-level vision differ mainly at the level of the sensory neurons feeding the decision processes.
Molecular Mechanism of Action of Antimalarial Benzoisothiazolones: Species-Selective Inhibitors of the Plasmodium spp. MEP Pathway enzyme, IspD
Authors: Price Kathryn E. , Armstrong Christopher M. , Imlay Leah S. , Hodge Dana M. , Pidathala C. , Roberts Natalie J. , Park Jooyoung , Mikati Marwa , Sharma Raman , Lawrenson Alexandre S. , Tolia Niraj H. , Berry Neil G. , O’Neill Paul M. , John Audrey R. Odom 
Published: November 2016

AbstractThe methylerythritol phosphate (MEP) pathway is an essential metabolic pathway found in malaria parasites, but absent in mammals, making it a highly attractive target for the discovery of novel and selective antimalarial therapies. Using high-throughput screening, we have identified 2-phenyl benzo[d]isothiazol-3(2H)-ones as species-selective inhibitors of Plasmodium spp. 2-C-methyl-D-erythritol-4-phosphate cytidyltransferase (IspD), the third catalytic enzyme of the MEP pathway. 2-Phenyl benzo[d]isothiazol-3(2H)-ones display nanomolar inhibitory activity against P. falciparum and P. vivax IspD and prevent the growth of P. falciparum in culture, with EC50 values below 400 nM. In silico modeling, along with enzymatic, genetic and crystallographic studies, have established a mechanism-of-action involving initial non-covalent recognition of inhibitors at the IspD binding site, followed by disulfide bond formation through attack of an active site cysteine residue on the benzo[d]isothiazol-3(2H)-one core. The species-selective inhibitory activity of these small molecules against Plasmodium spp. IspD and cultured parasites suggests they have potential as lead compounds in the pursuit of novel drugs to treat malaria.
Empirically testing vaterite structural models using neutron diffraction and thermal analysis
Authors: Chakoumakos Bryan C. , Pracheil Brenda M. , Koenigs Ryan P. , Bruch Ronald M. , Feygenson Mikhail 
Published: November 2016

AbstractOtoliths, calcium carbonate (CaCO3) ear bones, are among the most commonly used age and growth structures of fishes. Most fish otoliths are comprised of the most dense CaCO3 polymorph, aragonite. Sturgeon otoliths, in contrast, have been characterized as the rare and structurally enigmatic polymorph, vaterite—a metastable polymorph of CaCO3. Vaterite is an important material ranging from biomedical to personal care applications although its crystal structure is highly debated. We characterized the structure of Lake Sturgeon otoliths using thermal analysis and neutron powder diffraction, which is used non-destructively. We confirmed that while Lake Sturgeon otoliths are primarily composed of vaterite, they also contain the denser CaCO3 polymorph, calcite. For the vaterite fraction, neutron diffraction data provide enhanced discrimination of the carbonate group compared to x-ray diffraction data, owing to the different relative neutron scattering lengths, and thus offer the opportunity to uniquely test the more than one dozen crystal structural models that have been proposed for vaterite. Of those, space group P6522 model, a = 7.1443(4)Å, c = 25.350(4)Å, V = 1121.5(2)Å3 provides the best fit to the neutron powder diffraction data, and allows for a structure refinement using rigid carbonate groups.
To What Extent Local Forest Soil Pollen Can Assist Restoration in Subtropical China?
Authors: Sun Zhongyu , Wang Jun , Ren Hai , Guo Qinfeng , Shu Junwu , Liu Nan 
Published: November 2016

AbstractLong-term ecological data play a vital role in ecological conservation and restoration, however, using information from local forest soil pollen data to assist restoration remains a challenge. This study analyzed two data sets, including 1) surface soil pollen (0–5 cm) and current vegetation data from four near-natural communities and four plantations, and 2) fossil pollen from soil profiles (0–80 cm) from a regional climax community and a degraded land. The pollen representativeness and similarity indexes were calculated. The results showed a low similarity between soil pollen and current vegetation (about 20%) thus forest soil pollen data should be used with caution when defining reference ecosystems. Pollen from Gironniera and Rutaceae which were abundant in broadleaved forest, were also detected in the 40–80 cm layer of a soil profile from the degraded land, which indicates its restoration possibility. Our study considered that the early restoration stage of the study area may benefit from using plant taxa of Pinus, Poaceae, Lonicera, Casuarina, Trema and Quercus. As Pinus, Castanopsis, Gironniera, Rutaceae, Helicia, Randia, Poaceae, Dicranopteris and Pteris always existed during succession, for regional forest restoration under global climate change, the roles of such “stable species” should be considered.
Postnatal auditory preferences in piglets differ according to maternal emotional experience with the same sounds during gestation
Authors: Tallet Céline , Rakotomahandry Marine , Guérin Carole , Lemasson Alban , Hausberger Martine 
Published: November 2016

AbstractPrenatal sensory experience, notably auditory experience, is a source of fetal memories in many species. The contiguity between sensory stimuli and maternal emotional reactions provides opportunity for associative learning in utero but no clear evidence for this associative learning has been presented to date. Understanding this phenomenon would advance our knowledge of fetal sensory learning capacities. In the present study we tested the hypothesis that sounds (human voice) broadcast to pregnant sows while they experienced positive or negative emotional situations influences postnatal reactions of their offspring to these same sounds. The results show that: 1) from the first testing at the age of 2 days, the experimental piglets were less distressed by a social separation than controls if they heard the “familiar” voice, 2) piglets generalized to any human voice although the influence of novel voices was less pronounced, 3) in a challenging situation, piglets were more distressed if they heard the voice that was associated with maternal negative emotional state in utero. These findings open a whole line of new research on the long term effect of in utero associative learning that goes well beyond pigs, providing a framework for reconsidering the importance of sensory and emotional experiences during gestation.
Aspirin upregulates αB-Crystallin to protect the myocardium against heat stress in broiler chickens
Authors: Tang Shu , Yin Bin , Song Erbao , Chen Hongbo , Cheng Yanfen , Zhang Xiaohui , Bao Endong , Hartung Joerg 
Published: November 2016

AbstractWe established in vivo and in vitro models to investigate the role of αB-Crystallin (CryAB) and assess the ability of aspirin (ASA) to protect the myocardium during prolonged heat stress. Thirty-day-old chickens were divided into three groups (n = 90): heat stress (HS, 40±1 °C); ASA(−)HS(+), 1 mg/kg ASA orally 2 h before heat stress; and ASA(+)HS(−), pretreated with aspirin, no heat stress (25 °C). Hearts were excised after 0, 1, 2, 3, 5, 7, 10, 15 and 24 h. Heat stress increased body temperature, though the ASA(−)HS(+) group had significantly higher temperatures than the ASA(+)HS(+) group at all time points. Compared to ASA(+)HS(+), the ASA(−)HS(+) group displayed increased sensitivity to heat stress. Pathological analysis revealed the ASA (+)HS(+) myocardium showed less severe changes (narrowed, chaotic fibers; fewer necrotic cells) than the ASA(−)HS(+) group (bleeding and extensive cell death). In vitro, ASA-pretreatment significantly increased primary chicken myocardial cell survival during heat stress. ELISAs indicated ASA induced CryAB in vivo to protect against heat stress-induced myocardial damage, but ASA did not induce CryAB in primary chicken myocardial cells. The mechanisms by which ASA induces the expression of CryAB in vivo and protects the myocardium during heat stress merit further research.
A variation in KCNQ1 gene is associated with repaglinide efficacy on insulin resistance in Chinese Type 2 Diabetes Mellitus Patients
Authors: Zhou Xueyan , Zhu Jing , Bao Zejun , Shang Zhenhai , Wang Tao , Song Jinfang , Sun Juan , Li Wei , Adelusi Temitope Isaac , Wang Yan , Lv Dongmei , Lu Qian , Yin Xiaoxing 
Published: November 2016

AbstractRepaglinide is an insulin secretagogue that often exhibits considerable interindividual variability in therapeutic efficacy. The current study was designed to investigate the impact of KCNQ1 genetic polymorphism on the efficacy of repaglinide and furthermore to identify the potential mechanism of action in patients with type 2 diabetes. A total of 305 patients and 200 healthy subjects were genotyped for the KCNQ1 rs2237892 polymorphism, and 82 patients with T2DM were randomized for the oral administration of repaglinide for 8 weeks. HepG2 cells were incubated with repaglinide in the absence or presence of a KCNQ1 inhibitor or the pcDNA3.1-hKCNQ1 plasmid, after which the levels of Akt, IRS-2 and PI(3)K were determined. Our data showed that repaglinide significantly decreased HOMA-IR in patients with T2DM. Furthermore, the level of HOMA-IR was significantly reduced in those patients with CT or TT genotypes than CC homozygotes. The KCNQ1 inhibitor enhanced repaglinide efficacy on insulin resistance, with IRS-2/PI(3)K/Akt signaling being up-regulated markedly. As in our clinical experiment, these data strongly suggest that KCNQ1 genetic polymorphism influences repaglinide response due to the pivotal role of KCNQ1 in regulating insulin resistance through the IRS-2/PI(3)K/Akt signaling pathway. This study was registered in the Chinese Clinical Trial Register on May 14, 2013. (No. ChiCTR-CCC13003536).
Strong interactions between learned helplessness and risky decision-making in a rat gambling model
Authors: Nobrega José N. , Hedayatmofidi Parisa S. , Lobo Daniela S. 
Published: November 2016

AbstractRisky decision-making is characteristic of depression and of addictive disorders, including pathological gambling. However it is not clear whether a propensity to risky choices predisposes to depressive symptoms or whether the converse is the case. Here we tested the hypothesis that rats showing risky decision-making in a rat gambling task (rGT) would be more prone to depressive-like behaviour in the learned helplessness (LH) model. Results showed that baseline rGT choice behaviour did not predict escape deficits in the LH protocol. In contrast, exposure to the LH protocol resulted in a significant increase in risky rGT choices on retest. Unexpectedly, control rats subjected only to escapable stress in the LH protocol showed a subsequent decrease in riskier rGT choices. Further analyses indicated that the LH protocol affected primarily rats with high baseline levels of risky choices and that among these it had opposite effects in rats exposed to LH-inducing stress compared to rats exposed only to the escape trials. Together these findings suggest that while baseline risky decision making may not predict LH behaviour it interacts strongly with LH conditions in modulating subsequent decision-making behaviour. The suggested possibility that stress controllability may be a key factor should be further investigated.
YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses
Authors: Chen Chih-yu , Shi Wenqiang , Balaton Bradley P. , Matthews Allison M. , Li Yifeng , Arenillas David J. , Mathelier Anthony , Itoh Masayoshi , Kawaji Hideya , Lassmann Timo , Hayashizaki Yoshihide , Carninci Piero , Forrest Alistair R. R. , Brown Carolyn J. , Wasserman Wyeth W. 
Published: November 2016

AbstractSex differences in susceptibility and progression have been reported in numerous diseases. Female cells have two copies of the X chromosome with X-chromosome inactivation imparting mono-allelic gene silencing for dosage compensation. However, a subset of genes, named escapees, escape silencing and are transcribed bi-allelically resulting in sexual dimorphism. Here we conducted in silico analyses of the sexes using human datasets to gain perspectives into such regulation. We identified transcription start sites of escapees (escTSSs) based on higher transcription levels in female cells using FANTOM5 CAGE data. Significant over-representations of YY1 transcription factor binding motif and ChIP-seq peaks around escTSSs highlighted its positive association with escapees. Furthermore, YY1 occupancy is significantly biased towards the inactive X (Xi) at long non-coding RNA loci that are frequent contacts of Xi-specific superloops. Our study suggests a role for YY1 in transcriptional activity on Xi in general through sequence-specific binding, and its involvement at superloop anchors.
Bright blue-shifted fluorescent proteins with Cys in the GAF domain engineered from bacterial phytochromes: fluorescence mechanisms and excited-state dynamics
Authors: Hontani Yusaku , Shcherbakova Daria M. , Baloban Mikhail , Zhu Jingyi , Verkhusha Vladislav V. , Kennis John T. M. 
Published: November 2016

AbstractNear-infrared fluorescent proteins (NIR FPs) engineered from bacterial phytochromes (BphPs) are of great interest for in vivo imaging. They utilize biliverdin (BV) as a chromophore, which is a heme degradation product, and therefore they are straightforward to use in mammalian tissues. Here, we report on fluorescence properties of NIR FPs with key alterations in their BV binding sites. BphP1-FP, iRFP670 and iRFP682 have Cys residues in both PAS and GAF domains, rather than in the PAS domain alone as in wild-type BphPs. We found that NIR FP variants with Cys in the GAF or with Cys in both PAS and GAF show blue-shifted emission with long fluorescence lifetimes. In contrast, mutants with Cys in the PAS only or no Cys residues at all exhibit red-shifted emission with shorter lifetimes. Combining these results with previous biochemical and BphP1-FP structural data, we conclude that BV adducts bound to Cys in the GAF are the origin of bright blue-shifted fluorescence. We propose that the long fluorescence lifetime follows from (i) a sterically more constrained thioether linkage, leaving less mobility for ring A than in canonical BphPs, and (ii) that π-electron conjugation does not extend on ring A, making excited-state deactivation less sensitive to ring A mobility.
Origin of unusual HREE-Mo-rich carbonatites in the Qinling orogen, China
Authors: Song Wenlei , Xu Cheng , Smith Martin P. , Kynicky Jindrich , Huang Kangjun , Wei Chunwan , Zhou Li , Shu Qihai 
Published: November 2016

AbstractCarbonatites, usually occurring within intra-continental rift-related settings, have strong light rare earth element (LREE) enrichment; they rarely contain economic heavy REE (HREE). Here, we report the identification of Late Triassic HREE-Mo-rich carbonatites in the northernmost Qinling orogen. The rocks contain abundant primary HREE minerals and molybdenite. Calcite-hosted fluid inclusions, inferred to represent a magmatic-derived aqueous fluid phase, contain significant concentrations of Mo (~17 ppm), reinforcing the inference that these carbonatitic magmas had high Mo concentrations. By contrast, Late Triassic carbonatites in southernmost Qinling have economic LREE concentrations, but are depleted in HREE and Mo. Both of these carbonatite types have low δ26Mg values (−1.89 to −1.07‰), similar to sedimentary carbonates, suggesting a recycled sediment contribution for REE enrichment in their mantle sources. We propose that the carbonatites in the Qinling orogen were formed, at least in part, by the melting of a subducted carbonate-bearing slab, and that 10 Ma younger carbonatite magmas in the northernmost Qinling metasomatized the thickened eclogitic lower crust to produce high levels of HREE and Mo.
Mobile phone signal exposure triggers a hormesis-like effect in Atm+/+ and Atm−/− mouse embryonic fibroblasts
Authors: Sun Chuan , Wei Xiaoxia , Fei Yue , Su Liling , Zhao Xinyuan , Chen Guangdi , Xu Zhengping 
Published: November 2016

AbstractRadiofrequency electromagnetic fields (RF-EMFs) have been classified by the International Agency for Research on Cancer as possible carcinogens to humans; however, this conclusion is based on limited epidemiological findings and lacks solid support from experimental studies. In particular, there are no consistent data regarding the genotoxicity of RF-EMFs. Ataxia telangiectasia mutated (ATM) is recognised as a chief guardian of genomic stability. To address the debate on whether RF-EMFs are genotoxic, we compared the effects of 1,800 MHz RF-EMF exposure on genomic DNA in mouse embryonic fibroblasts (MEFs) with proficient (Atm+/+) or deficient (Atm−/−) ATM. In Atm+/+ MEFs, RF-EMF exposure for 1 h at an average special absorption rate of 4.0 W/kg induced significant DNA single-strand breaks (SSBs) and activated the SSB repair mechanism. This effect reduced the DNA damage to less than that of the background level after 36 hours of exposure. In the Atm−/− MEFs, the same RF-EMF exposure for 12 h induced both SSBs and double-strand breaks and activated the two repair processes, which also reduced the DNA damage to less than the control level after prolonged exposure. The observed phenomenon is similar to the hormesis of a toxic substance at a low dose. To the best of our knowledge, this study is the first to report a hormesis-like effect of an RF-EMF.
NapB in excess inhibits growth of Shewanella oneidensis by dissipating electrons of the quinol pool
Authors: Jin Miao , Zhang Qianyun , Sun Yijuan , Gao Haichun 
Published: November 2016

AbstractShewanella, a group of ubiquitous bacteria renowned for respiratory versatility, thrive in environments where various electron acceptors (EAs) of different chemical and physiological characteristics coexist. Despite being extensively studied, we still know surprisingly little about strategies by which multiple EAs and their interaction define ecophysiology of these bacteria. Previously, we showed that nitrite inhibits growth of the genus representativeShewanella oneidensison fumarate and presumably some other CymA (quinol dehydrogenase)-dependent EAs by reducing cAMP production, which in turn leads to lowered expression of nitrite and fumarate reductases. In this study, we demonstrated that inhibition of fumarate growth by nitrite is also attributable to overproduction of NapB, the cytochromecsubunit of nitrate reductase. Further investigations revealed that excessive NapBper seinhibits growth on all EAs tested, including oxygen. When overproduced, NapB acts as an electron shuttle to dissipate electrons of the quinol pool, likely to extracellullar EAs, because the Mtr system, the major electron transport pathway for extracellular electron transport, is implicated. The study not only sheds light on mechanisms by which certain EAs, especially toxic ones, impact the bacterial ecophysiology, but also provides new insights into how electron shuttlec-type cytochromes regulate multi-branched respiratory networks.
A self-regenerable soot sensor with a proton-conductive thin electrolyte and a nanostructured platinum sensing electrode
Authors: Lv Peiling , Ito Takenori , Oogushi Akihide , Nakashima Kensaku , Nagao Masahiro , Hibino Takashi 
Published: November 2016

AbstractIn recent years, exhaust sensors have become increasingly attractive for use in energy and environmental technologies. Important issues regarding practical applications of these sensors, especially for soot measurements, include the further development of ion-conductive electrolytes and active electrode catalysts for meeting performance and durability requirements. Herein, we design a proton conductor with a high breakdown voltage and a sensing electrode with high sensitivity to electrochemical carbon oxidation, enabling continuous soot monitoring with self-regeneration of the sensor. A Si0.97Al0.03HxP2O7-δ layer with an excellent balance between proton conductivity and voltage endurance was grown on the surface of a Si0.97Al0.03O2-δ substrate by reacting it with liquid H3PO4 at 600 °C. Specific reactivity of the electrochemically formed active oxygen toward soot was accomplished by adding a Pt-impregnated Sn0.9In0.1HxP2O7-δ catalyst into a Pt sensing electrode. To make the best use of these optimized materials, a unipolar electrochemical device was fabricated by configuring the sensing and counter electrodes on the same surface of the electrolyte layer. The resulting amperometric mode sensor successfully produced a current signal that corresponded to the quantity of soot.
Neural correlates underlying impaired memory facilitation and suppression of negative material in depression
Authors: Zhang Dandan , Xie Hui , Liu Yunzhe , Luo Yuejia 
Published: November 2016

AbstractPrevious behavioral studies demonstrated that depressed individuals have difficulties in forgetting unwanted, especially negative, event. However, inconsistent results still exit and the neural mechanism of this phenomenon has not been investigated. This study examined the intentional memory facilitation/suppression of negative and neutral materials in depression using Think/No-Think paradigm. We found that compared with nondepressed group, depressed group recalled more negative items, irrespective of either "Think" or "No-Think" instructions. Accordingly, the frontal N2 (reflecting voluntary memory inhibition) and parietal late positive component (LPC) (reflecting conscious recollection) showed deflection for negative items in depressed compared with nondepressed participants. On the one hand, the reduced N2 for negative "No-Think" items indicated that depressed individuals have low motivation to suppress negative items so intentional forgetting is less successful for mood-congruent events. On the other hand, the enhanced LPC for negative "Think" items suggested that negative memories are excessively revisited by depressed participants (compared with nondepressed ones) due to their mood-congruent and intrusive nature. Thus we demonstrated that depressed individuals show behavioral and ERP deviations from healthy controls for both voluntary suppression and conscious retrieval of negative memory; the two abnormalities of memory control together contribute to the difficulties in forgetting negative material in depression.