bluuebunny/crossref_metadata_2025_split huggingface dataset:
Fresh-frozen Complete Extensor Mechanism Allograft versus Autograft Reconstruction in Rabbits
Authors: Chen Guanyin , Zhang Hongtao , Ma Qiong , Zhao Jian , Zhang Yinglong , Fan Qingyu , Ma Baoan 
Published: February 2016

AbstractDifferent clinical results have been reported in the repair of extensor mechanism disruption using fresh-frozen complete extensor mechanism (CEM) allograft, creating a need for a better understanding of fresh-frozen CME allograft reconstruction. Here, we perform histological and biomechanical analyses of fresh-frozen CEM allograft or autograft reconstruction in an in vivo rabbit model. Our histological results show complete incorporation of the quadriceps tendon into the host tissues, patellar survival and total integration of the allograft tibia, with relatively fewer osteocytes, into the host tibia. Vascularity and cellularity are reduced and delayed in the allograft but exhibit similar distributions to those in the autograft. The infrapatellar fat pad provides the main blood supply and the lowest cellularity is observed in the patellar tendon close to the tibia in both the allograft and autograft. The biomechanical properties of the junction of quadriceps tendon and host tissues and those of the allograft patellar tendon are completely and considerably restored, respectively. Therefore, fresh-frozen CEM allograft reconstruction is viable, but the distal patellar tendon and the tibial block may be the weak links of the reconstruction. These findings provide new insight into the use of allograft in repairing disruption of the extensor mechanism.
Evaluation of Parameters for High Efficiency Transformation of Acinetobacter baumannii
Authors: Yildirim Suleyman , Thompson Mitchell G. , Jacobs Anna C. , Zurawski Daniel V. , Kirkup Benjamin C. 
Published: February 2016

AbstractAcinetobacter baumannii is an emerging, nosocomial pathogen that is poorly characterized due to a paucity of genetic tools and methods. While whole genome sequence data from several epidemic and environmental strains have recently become available, the functional characterization of genes is significantly lagging. Efficient transformation is one of the first steps to develop molecular tools that can be used to address these shortcomings. Here we report parameters allowing high efficiency transformation of A. baumannii. Using a multi-factorial experimental design we found that growth phase, voltage, and resistance all significantly contribute to transformation efficiency. The highest efficiency (4.3 × 108 Transformants/μg DNA) was obtained at the stationary growth phase of the bacterium (OD 6.0) using 25 ng of plasmid DNA under 100 Ohms resistance and 1.7 kV/cm voltage. The optimized electroporation parameters reported here provide a useful tool for genetic manipulation of A. baumannii.
ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses
Authors: Cheung Ming-Yan , Li Xiaorong , Miao Rui , Fong Yu-Hang , Li Kwan-Pok , Yung Yuk-Lin , Yu Mei-Hui , Wong Kam-Bo , Chen Zhongzhou , Lam Hon-Ming 
Published: February 2016

Significance
Among all regular nucleotides, GTP is commonly regarded as the sole signaling ligand associated with G proteins. However, the ability of the YchF subfamily (an unconventional G protein) to bind and hydrolyze both GTP and ATP poses a major question on the role of ATP binding. Through X-ray crystallography, we showed the different specific conformational changes caused by the binding of OsYchF1 to ATP versus GTP. A mutation that precludes the binding/hydrolysis of ATP also prevents OsYchF1 from functioning as a negative regulator of plant defense responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance. This discovery will have a significant impact on our understanding of the structure–function relationships of the YchF subfamily of G proteins in all kingdoms of life.
FOXC1 maintains the hair follicle stem cell niche and governs stem cell quiescence to preserve long-term tissue-regenerating potential
Authors: Lay Kenneth , Kume Tsutomu , Fuchs Elaine 
Published: February 2016

Significance
Stem cells (SCs) of the hair follicle (HF) undergo cyclical bouts of activity during which hair regeneration occurs. They reside in a specialized niche, the bulge, which confers upon them extended periods of quiescence. Here, we identify Forkhead box C1 (FOXC1) as a key transcriptional regulator of HFSC activity and bulge maintenance. Loss of FOXC1 reduces the threshold for HFSC activation, causing excessive HFSC usage and dramatically shortening periods between hair growth cycles. Additionally, signs of weakened cellular junctions are seen within the niche, resulting in mechanically induced, premature loss of established hairs along with some SCs. The consequences of these defects are dire for aging animals, which display diminished HFSC niches and a sparse hair coat.
Diet of the Assamese macaque Macaca assamensis in limestone habitats of Nonggang, China
Authors: Zhou Qihai , Wei Hua , Huang Zhonghao , Huang Chengming 
Published: February 2016

Abstract
To enhance our understanding of dietary adaptations in macaques we studied the diet of the Assamese macaque Macaca assamensis in limestone seasonal rain forests at Nonggang Nature Reserve, China from September 2005 to August 2006. Our results show that although macaques fed on many plant species, 85.2% of the diet came from only 12 species, of which a bamboo species, Indocalamus calcicolus contributed to 62% of the diet. Young leaves were staple food items (74.1% of the diet) for Assamese macaques at Nonggang, and constituted the bulk of monthly diets almost year-round, ranging from 44.9% (July) to 92.9% (May). Young parts of Indocalamus calcicolus unexpanded leaves contributed to a large proportion of the young leaf diet in most months. Fruit accounted for only 17.4% of the diet, with a peak of consumption in July. We suggest that this highly folivorous diet may be related to the long lean season of fruit availability in limestone habitats as well as the utilization of cliffs of low fruit availability.
Take only pictures, leave only...fear? The effects of photography on the West Indian anole Anolis cristatellus
Authors: Huang Brian , Lubarsky Katie , Teng Tiffany , Blumstein Daniel T. 
Published: February 2016

Abstract
Ecotourism encourages an environmentally friendly exploration of the world's natural habitats. Tourists often engage in wildlife photography, an activity that is generally not considered disturbing to animals. We investigated the effects of camera-related stimuli to determine whether shutter noise and/or flash affected the immediate behavior of female crested anoles Anolis cristaellus. Anoles decreased their display rate following stimuli that included shutter noises, but did not change their behavior in response to flash or silence treatments. To determine the relative importance of this response, we observed anole behavior following playbacks of calls from kestrels Falco sparverius, a predator, and bananaquits Coereba flaveola, a non-predator. Anoles decreased display rates following kestrel calls when compared to their response to bananaquit calls. Furthermore, anoles spent a greater proportion of time displaying following bananaquit calls compared to both kestrel calls and silence. The magnitude of response to shutter noises was about the same as that to predator calls. This demonstrates that photography may not be as benign as commonly believed, and we should consider whether restrictions on camera noises should be implemented to reduce animal disturbance.
Complex courtship displays facilitate male reproductive success and plasticity in signaling across variable environments
Authors: Wilgers Dustin J. , Hebets Eileen A. 
Published: February 2016

Abstract
Effective signal transmission is essential for communication. In environments where signal transmission is highly variable, signalers may utilize complex signals, which incorporate multiple components and modalities, to maintain effective communication. Male Rabidosa rabida wolf spiders produce complex courtship signals, consisting of both visual and seismic components. We test the hypothesis that the complex signaling of R. rabida contributes to male reproductive success in variable signaling environments. We first examine the condition-dependence of foreleg ornamentation (a presumed visual signal) and seismic signal components and find that both may provide potentially redundant information on foraging history. Next, we assessed reproductive success across manipulated signaling environments that varied in the effectiveness of visual and/or seismic signal transmission. In environments where only one signal could be successfully transmitted (e.g., visual or seismic), pairs were still able to successfully copulate. Additionally, we found that males altered their courtship display depending on the current signaling environment. Specifically, males reduced their use of a visual display component in signaling environments where visual signal transmission was ablated. Incorporating signals in multiple modalities not only enables R. rabida males to maintain copulation success across variable signaling environments, but it also enables males to adjust their composite courtship display to current signaling conditions.
The effect of pyrazine odor on avoidance learning and memory in wild robins Erithacus rubecula
Authors: Siddall Emma C. , Marples Nicola M. 
Published: February 2016

Abstract
Toxic insects advertise their defended state to potential predators using warning displays. Frequently these displays use cues through more than one sensory modality, and combine color, smell and sound to produce a multimodal warning display. Signalling through more than one sensory pathway may enhance the rate of avoidance learning, and the memorability of the learned avoidance. A common insect warning odor, pyrazine, has previously been shown to increase the rate of learned avoidance of unpalatable yellow prey by domestic chicks (Gallus gallus domesticus), and the odor also improved memory of this learned avoidance. However, to date no research has examined this response to pyrazine odor using wild birds under natural conditions. This study used wild robins (Erithacus rubecula) to investigate whether wild birds avoided yellow baits that smelled of pyrazine more strongly than those presented with no odor. The results provide some evidence that pyrazine odor does increase the level of protection an aposematic insect gains from a wild avian predator, but that the effect of pyrazine on learned avoidance was much weaker than was found with domestic chicks.
Forget-me-not: Complex floral displays, inter-signal interactions, and pollinator cognition
Authors: Leonard Anne S. , Dornhaus Anna , Papaj Daniel R. 
Published: February 2016

Abstract
Flowers are multisensory displays used by plants to influence the behavior of pollinators. Although we know a great deal about how individual signal components are produced by plants and detected or learned by pollinators, very few experiments directly address the function of floral signal complexity, i.e. how the multicomponent nature of these signals benefits plant or pollinator. Yet, experimental psychology suggests that increasing complexity can enhance subjects’ ability to detect, learn and remember stimuli, and the plant’s reproductive success depends upon ensuring that pollinators learn their signals and so transport pollen to other similar (conspecific) flowers. Here we explore functional hypotheses for why plants invest in complex floral displays, focusing on hypotheses in which floral signals interact to promote pollinator learning and memory. Specifically, we discuss how an attention-altering or context-providing function of one signal may promote acquisition or recall of a second signal. Although we focus on communication between plants and pollinators, these process-based hypotheses should apply to any situation where a sender benefits from enhancing a receiver’s acquisition or recall of information.
Locomotor adaptations in Plio-Pleistocene large carnivores from the Italian Peninsula: Palaeoecological implications
Authors: Meloro Carlo 
Published: February 2016

Abstract
Mammalian carnivores are rarely considered for environmental reconstructions because they are extremely adaptable and their geographic range is usually large. However, the functional morphology of carnivore long bones can be indicative of locomotor behaviour as well as adaptation to specific kind of habitats. Here, different long bone ratios belonging to a subsample of extant large carnivores are used to infer palaeoecology of a comparative sample of Plio-Pleistocene fossils belonging to Italian paleo-communities. A multivariate long bone shape space reveals similarities between extant and fossil carnivores and multiple logistic regression models suggest that specific indices (the brachial and the Mt/F) can be applied to predict adaptations to grassland and tropical biomes. These functional indices exhibit also a phylogenetic signal to different degree. The brachial index is a significant predictor of adaptations to tropical biomes when phylogeny is taken into account, while Mt/F is not correlated anymore to habitat adaptations. However, the proportion of grassland-adapted carnivores in Italian paleo-communities exhibits a negative relationship with mean oxygen isotopic values, which are indicative of past climatic oscillations. As climate became more unstable during the Ice Ages, large carnivore guilds from the Italian peninsula were invaded by tropical/closed-adapted species. These species take advantage of the temperate forest cover that was more spread after 1.0 Ma than in the initial phase of the Quaternary (2.0 Ma) when the climate was more arid.
Host-parasite interactions under extreme climatic conditions
Authors: Martinez J. , Merino S. 
Published: February 2016

Abstract
The effect that climatic changes can exert on parasitic interactions represents a multifactor problem whose results are difficult to predict. The actual impact of changes will depend on their magnitude and the physiological tolerance of affected organisms. When the change is considered extreme (i.e. unusual weather events that are at the extremes of the historical distribution for a given area), the probability of an alteration in an organisms’ homeostasis increases dramatically. However, factors determining the altered dynamics of host-parasite interactions due to an extreme change are the same as those acting in response to changes of lower magnitude. Only a deep knowledge of these factors will help to produce more accurate predictive models for the effects of extreme changes on parasitic interactions. Extreme environmental conditions may affect pathogens directly when they include free-living stages in their life-cycles and indirectly through reduced resource availability for hosts and thus reduced ability to produce efficient anti-parasite defenses, or by effects on host density affecting transmission dynamics of diseases or the frequency of intraspecific contact. What are the consequences for host-parasite interactions? Here we summarize the present knowledge on three principal factors in determining host-parasite associations; biodiversity, population density and immunocompetence. In addition, we analyzed examples of the effects of environmental alteration of anthropogenic origin on parasitic systems because the effects are analogous to that exerted by an extreme climatic change.
Community responses to extreme climatic conditions
Authors: Jiguet Frédéric , Brotons Lluis , Devictor Vincent 
Published: February 2016

Abstract
Species assemblages and natural communities are increasingly impacted by changes in the frequency and severity of extreme climatic events. Here we propose a brief overview of expected and demonstrated direct and indirect impacts of extreme events on animal communities. We show that differential impacts on basic biological parameters of individual species can lead to strong changes in community composition and structure with the potential to considerably modify the functional traits of the community. Sudden disequilibria have even been shown to induce irreversible shifts in marine ecosystems, while cascade effects on various taxonomic groups have been highlighted in Mediterranean forests. Indirect effects of extreme climatic events are expected when event-induced habitat changes (e.g. soil stability, vegetation composition, water flows altered by droughts, floods or hurricanes) have differential consequences on species assembled within the communities. Moreover, in increasing the amplitude of trophic mismatches, extreme events are likely to turn many systems into ecological traps under climate change. Finally, we propose a focus on the potential impacts of an extreme heat wave on local assemblages as an empirical case study, analysing monitoring data on breeding birds collected in France. In this example, we show that despite specific populations were differently affected by local temperature anomalies, communities seem to be unaffected by a sudden heat wave. These results suggest that communities are tracking climate change at the highest possible rate.
No evidence of contagious yawning in the red-footed tortoise Geochelone carbonaria
Authors: Wilkinson Anna , Sebanz Natalie , Mandl Isabella , Huber Ludwig 
Published: February 2016

Abstract
Three hypotheses have attempted to explain the phenomenon of contagious yawning. It has been hypothesized that it is a fixed action pattern for which the releasing stimulus is the observation of another yawn, that it is the result of non-conscious mimicry emerging through close links between perception and action or that it is the result of empathy, involving the ability to engage in mental state attribution. This set of experiments sought to distinguish between these hypotheses by examining contagious yawning in a species that is unlikely to show nonconscious mimicry and empathy but does respond to social stimuli: the red-footed tortoise Geochelone carbonaria. A demonstrator tortoise was conditioned to yawn when presented with a red square-shaped stimulus. Observer tortoises were exposed to three conditions: observation of conditioned yawn, non demonstration control, and stimulus only control. We measured the number of yawns for each observer animal in each condition. There was no difference between conditions. Experiment 2 therefore increased the number of conditioned yawns presented. Again, there was no significant difference between conditions. It seemed plausible that the tortoises did not view the conditioned yawn as a real yawn and therefore a final experiment was run using video recorded stimuli. The observer tortoises were presented with three conditions: real yawn, conditioned yawns and empty background. Again there was no significant difference between conditions. We therefore conclude that the red-footed tortoise does not yawn in response to observing a conspecific yawn. This suggests that contagious yawning is not the result of a fixed action pattern but may involve more complex social processes.
Wild dogma: An examination of recent “evidence” for dingo regulation of invasive mesopredator release in Australia
Authors: Allen Benjamin L. , Engeman Richard M. , Allen Lee R. 
Published: February 2016

Abstract
There is growing interest in the role that apex predators play in shaping terrestrial ecosystems and maintaining trophic cascades. In line with the mesopredator release hypothesis, Australian dingoes (Canis lupus dingo and hybrids) are assumed by many to regulate the abundance of invasive mesopredators, such as red foxes Vulpes vulpes and feral cats Felis catus, thereby providing indirect benefits to various threatened vertebrates. Several recent papers have claimed to provide evidence for the biodiversity benefits of dingoes in this way. Nevertheless, in this paper we highlight several critical weaknesses in the methodological approaches used in many of these reports, including lack of consideration for seasonal and habitat differences in activity, the complication of simple track-based indices by incorporating difficult-to-meet assumptions, and a reduction in sensitivity for assessing populations by using binary measures rather than potentially continuous measures. Of the 20 studies reviewed, 15 of them (75%) contained serious methodological flaws, which may partly explain the inconclusive nature of the literature investigating interactions between invasive Australian predators. We therefore assert that most of the “growing body of evidence” for meso-predator release is merely an inconclusive growing body of literature only. We encourage those interested in studying the ecological roles of dingoes relative to invasive mesopredators and native prey species to account for the factors we identify, and caution the value of studies that have not done so.
Bounding species distribution models
Authors: Stohlgren Thomas J. , Jarnevich Catherine S. , Esaias Wayne E. , Morisette Jeffrey T. 
Published: February 2016

Abstract
Species distribution models are increasing in popularity for mapping suitable habitat for species of management concern. Many investigators now recognize that extrapolations of these models with geographic information systems (GIS) might be sensitive to the environmental bounds of the data used in their development, yet there is no recommended best practice for “clamping” model extrapolations. We relied on two commonly used modeling approaches: classification and regression tree (CART) and maximum entropy (Maxent) models, and we tested a simple alteration of the model extrapolations, bounding extrapolations to the maximum and minimum values of primary environmental predictors, to provide a more realistic map of suitable habitat of hybridized Africanized honey bees in the southwestern United States. Findings suggest that multiple models of bounding, and the most conservative bounding of species distribution models, like those presented here, should probably replace the unbounded or loosely bounded techniques currently used.
Complete mitochondrial genome of Nanorana pleskei (Amphibia: Anura: Dicroglossidae) and evolutionary characteristics
Authors: Chen Guiying , Wang Bin , Liu Jiongyu , Xie Feng , Jiang Jianping 
Published: February 2016

Abstract
The complete mitochondrial genome of Nanorana pleskei from the Qinghai-Tibet Plateau was sequenced. It includes 17,660 base pairs, containing 13 protein-coding genes, two rRNAs and 23 tRNAs. A tandem duplication of tRNAMet gene was found in this mitochondrial genome, and the similarity between the two tRNAMet genes is 85.8%, being the highest in amphibian mitochondrial genomes sequenced thus far. Based on gene organization, 24 types were found from 145 amphibian mitochondrial genomes. Type 1 was present in 108 species, type 11 in 11 species, types 5, 16, 17, and 20 each in two species, and the others each present in one species. Fifteen types were found in Anura, being the most diversity in three orders of the Lissamphibia. Our phylogenetic results using 11 protein-coding gene sequences of 145 amphibian mitochondrial genomes strongly support the monophyly of the Lissamphibia, as well as its three orders, the Gymnophiona, Caudata, and Anura, among which the relationships were ((Gymnophiona (Caudata, Anura)). Based on the phylogenetic trees, type 1 was recognized as the ancestral type for amphibians, and type 11 was the synapomorphic type for the Neobatrachia. Gene rearrangements among lineages provide meaningful phylogenetic information. The rearrangement of the LTPF tRNA gene cluster and the translocation of the ND5 gene only found in the Neobatrachia support the monophyly of this group; similarly, the tandem duplication of the tRNAMet genes only found in the Dicroglossidae support the monophyly of this family.