bluuebunny/crossref_metadata_2025_split huggingface dataset:
Staff perceptions of best practice for information transfer about multitrauma patients on discharge from the emergency department: a focus group study
Authors: Calleja Pauline , Aitken Leanne , Cooke Marie 
Published: July 2016

Aims and ObjectivesTo understand: (1) staff perceptions of best practice for information transfer for multitrauma patients on discharge from the emergency department; (2) what information should be conveyed at transfer and (3) how information is transferred.BackgroundInformation transfer for multitrauma patients is an integral factor for continuity of care, safety, quality assurance and patient outcomes; however, this has not been the focus of previous studies.DesignThis was a qualitative study using focus group interviews.MethodsData were collected during focus group interviews across five clinical areas. Themes were derived from the data with consensus from three data coders. Purposive sampling was used and included staff caring for trauma patients during patient transition out of the emergency department. Participants were representatives of the emergency department, perioperative care, intensive care unit, high dependency care unit and the trauma service unit. Twenty‐six registered nurses and two medical officers participated.ResultsFive focus group interviews were held. Themes emerged from the data including ‘Variability’, ‘Continuity’ and ‘Putting the pieces together’. The first three themes were all influenced by the fourth theme of ‘Values/Context’. Considered together these themes influenced staff perception of the quality of information transfer for multitrauma patients on discharge from the emergency department.ConclusionsStaff perceived best practice for information transfer to be clear, concise, relevant documentation that travelled with the patient and interactive communication at handover that adhered to agreed principles and a minimum data set specific to trauma patients.Relevance to clinical practiceClinicians involved in handover need to actively listen, avoiding ‘doing’ at the same time, be aware of essential questions to ask about the patient. An agreed expectation between different clinical areas needs to exist about information transfer to reduce variability. The minimum data required to provide ongoing safe care for multitrauma patients are identified.
Functional brain imaging of episodic memory decline in ageing
Authors: Nyberg L. 
Published: July 2016

AbstractThe episodic long‐term memory system supports remembering of events. It is considered to be the most age‐sensitive system, with an average onset of decline around 60 years of age. However, there is marked interindividual variability, such that some individuals show faster than average change and others show no or very little change. This variability may be related to the risk of developing dementia, with elevated risk for individuals with accelerated episodic memory decline. Brain imaging with functional magnetic resonance imaging (MRI) of blood oxygen level‐dependent (BOLD) signalling or positron emission tomography (PET) has been used to reveal the brain bases of declining episodic memory in ageing. Several studies have demonstrated a link between age‐related episodic memory decline and the hippocampus during active mnemonic processing, which is further supported by studies of hippocampal functional connectivity in the resting state. The hippocampus interacts with anterior and posterior neocortical regions to support episodic memory, and alterations in hippocampus–neocortex connectivity have been shown to contribute to impaired episodic memory. Multimodal MRI studies and more recently hybrid MRI/PET studies allow consideration of various factors that can influence the association between the hippocampal BOLD signal and memory performance. These include neurovascular factors, grey and white matter structural alterations, dopaminergic neurotransmission, amyloid‐Β and glucose metabolism. Knowledge about the brain bases of episodic memory decline can guide interventions to strengthen memory in older adults, particularly in those with an elevated risk of developing dementia, with promising results for combinations of cognitive and physical stimulation.
Delayed Light Activation Improves Color Stability of Dual‐Cured Resin Cements
Authors: Furuse Adilson Y. , Santana Lino Oliveira Carvalho , Rizzante Fabio Antonio Piola , Ishikiriama Sérgio Kiyoshi , Bombonatti Juliana Fraga , Correr Gisele Maria , Gonzaga Carla Castiglia 
Published: July 2016

AbstractPurposeTo evaluate the color change caused by post‐irradiation conversion (ΔE24h and ΔE8 days) and artificial aging (ΔEAGING) of resin cements light activated through ceramics of different opacities immediately and 6 minutes after manipulating the material.Materials and MethodsResin cement disks (Allcem and LuxaCore) were light activated through ceramics (without ceramic, e.max HT, LT, and MO) immediately and 6 minutes after the manipulation (n = 10). Spectrophotometry was used to evaluate ΔE24h and ΔE8 days after 37˚C‐dry‐dark‐storage for 24 hours and 8 days, and ΔEAGING after 60˚C‐water‐storage for 24 hours. Data were analyzed with three‐way ANOVA and Tukey's HSD (α = 0.05).ResultsRegarding the post‐irradiation color change, significant differences were found between the cements (p < 0.0001), light activation protocols (p = 0.037), and ceramics (p < 0.001). The immediate activation (16.2 ± 0.1) showed lower ΔE values than the delayed activation (16.5 ± 0.1). Ceramics influenced the ΔE values as follows: MO (14.0 ± 1.2) < LT (14.9 ± 1.2) ≈ HT (15.4 ± 1.2) < control (21.2 ± 1.2). Regarding ΔEAGING, significant differences were found between cements (p < 0.001), light activation (p = 0.006), and ceramics (p < 0.001). The delayed activation (8.4 ± 0.1) showed lower values than the immediate activation (8.9 ± 0.1). Ceramic spacers influenced ΔEAGING as follows: control (5.6 ± 0.2) < MO (6.6 ± 0.2) < HT (11.0 ± 0.2) ≈ LT (11.5 ± 0.2).ConclusionThe delayed light activation resulted in increased color stability, while the ceramic interposition resulted in lower color stability.
The theory of the nested species–area relationship: geometric foundations of biodiversity scaling
Authors: Storch David 
Published: July 2016

AbstractThe relationship between sampled area and the number of species within that area, the species–area relationship (SAR), is a major biodiversity pattern and one of a few law‐like regularities in ecology. While the SAR for isolated units (islands or continents) is assumed to result from the dynamics of species colonization, speciation and extinction, the SAR for contiguous areas in which smaller plots are nested within larger sample areas can be attributed to spatial patterns in the distribution of individuals. The nested SAR is typically triphasic in logarithmic space, so that it increases steeply at smaller scales, decelerates at intermediate scales and increases steeply again at continental scales. I will review current theory for this pattern, showing that all three phases of the SAR can be derived from simple geometric considerations. The increase of species richness with area in logarithmic space is generally determined by overall species rarity, so that the rarer the species are on average, the higher is the local slope z. Rarity is scale‐dependent: species occupy only a minor proportion of area at broad spatial scales, leading to upward accelerating shape of the SAR at continental scales. Similarly, species are represented by only a few individuals at fine spatial scales, leading to high SAR slope also at small areas. Geometric considerations reveal links of the SAR to other macroecological patterns, namely patterns of β‐diversity, the species–abundance distribution, and the relationship between energy availability (or productivity) and species richness. Knowledge of the regularities concerning nested SARs may be used for standardizing unequal areas, upscaling species richness and estimating species loss due to area loss, but all these applications have their limits, which also follow from the geometric considerations.
Linking the impacts of plant invasion on community functional structure and ecosystem properties
Authors: Castro‐Díez Pilar , Pauchard Aníbal , Traveset Anna , Vilà Montserrat 
Published: July 2016

AbstractQuestionsMany studies report a decrease of native species richness in communities after plant invasion by exotic taxa, but the implications of species losses on community functional structure and ecosystem processes have been less explored. The questions addressed are: (1) what are the impacts of invasive plant taxa on the functional structure of the recipient community; and (2) are there links between such functional structure and ecosystem properties representing key ecosystem processes?LocationCostal habitats of Mallorca and Menorca, Balearic Islands, Spain.MethodsIn paired invaded and non‐invaded plots, species frequencies and ecosystem properties related to biogeochemical cycles (soil C and N content, soil moisture and decomposition rate) were assessed. For every native species we obtained values of several functional traits (plant height, woodiness, N fixation and evergreenness). Then we calculated indices of community functional structure (community‐weighted means for each trait; functional diversity: richness, evenness, divergence and dispersion; and functional redundancy) and compared them between paired invaded and non‐invaded plots. The relationship with ecosystem properties was assessed using GLM.ResultsThe spectra of trait distribution changed in the invaded assemblages towards a higher frequency of woodiness and evergreenness. Invaded communities showed decreased species richness, and lower functional richness, divergence, dispersion and redundancy. In contrast, ecosystem properties were scarcely sensitive to invasion. Functional redundancy was negatively related to soil N of invaded plots and soil moisture in the dry season, which suggests higher depletion of soil resources when several species share the same combination of trait values.ConclusionsCarpobrotus invasion led to a functional homogenization within communities, which probably reduces their resilience. The functional structure of the community was more responsive to invasion than the ecosystem properties. The weak relationship between functional indices and ecosystem properties suggests that they may respond to invasion at different rates.
The formation environment of potassic‐chloro‐hastingsite in the nakhlites MIL 03346 and pairs and NWA 5790: Insights from terrestrial chloro‐amphibole
Authors: Giesting Paul A. , Filiberto Justin 
Published: July 2016

AbstractPotassic‐chloro‐hastingsite has been found in melt inclusions in MIL 03346, its paired stones, and NWA 5790. It is some of the most chlorine‐rich amphibole ever analyzed. In this article, we evaluate what crystal chemistry, terrestrial analogs, and experiments have shown about how chlorine‐dominant amphibole (chloro‐amphibole) forms and apply these insights to the nakhlites. Chloro‐amphibole is rare, with about a dozen identified localities on Earth. It is always rich in potassium and iron and poor in titanium. In terrestrial settings, its presence has been interpreted to result from medium to high‐grade alteration (>400 °C) of a protolith by an alkali and/or iron chloride‐rich aqueous fluid. Ferrous chloride fluids exsolved from mafic magmas can cause such alteration, as can crustal fluids that have reacted with rock and lost H2O in preference to chloride, resulting in concentrated alkali chloride fluids. In the case of the nakhlites, an aqueous alkali‐ferrous chloride fluid was exsolved from the parental melt as it crystallized. This aqueous chloride fluid itself likely unmixed into chloride‐dominant and water‐dominant fluids. Chloride‐dominant fluid was trapped in some melt inclusions and reacted with the silicate contents of the inclusion to form potassic‐chloro‐hastingsite.
Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika
Authors: Gante Hugo F. , Matschiner Michael , Malmstrøm Martin , Jakobsen Kjetill S. , Jentoft Sissel , Salzburger Walter 
Published: July 2016

AbstractHow variation in the genome translates into biological diversity and new species originate has endured as the mystery of mysteries in evolutionary biology. African cichlid fishes are prime model systems to address speciation‐related questions for their remarkable taxonomic and phenotypic diversity, and the possible role of gene flow in this process. Here, we capitalize on genome sequencing and phylogenomic analyses to address the relative impacts of incomplete lineage sorting, introgression and hybrid speciation in the Neolamprologus savoryi‐complex (the ‘Princess cichlids’) from Lake Tanganyika. We present a time‐calibrated species tree based on whole‐genome sequences and provide strong evidence for incomplete lineage sorting in the early phases of diversification and multiple introgression events affecting different stages. Importantly, we find that the Neolamprologus chromosomes show centre‐to‐periphery biases in nucleotide diversity, sequence divergence, GC content, incomplete lineage sorting and rates of introgression, which are likely modulated by recombination density and linked selection. The detection of heterogeneous genomic landscapes has strong implications on the genomic mechanisms involved in speciation. Collinear chromosomal regions can be protected from gene flow and harbour incompatibility genes if they reside in lowly recombining regions, and coupling can evolve between nonphysically linked genomic regions (chromosome centres in particular). Simultaneously, higher recombination towards chromosome peripheries makes these more dynamic, evolvable regions where adaptation polymorphisms have a fertile ground. Hence, differences in genome architecture could explain the levels of taxonomic and phenotypic diversity seen in taxa with collinear genomes and might have contributed to the spectacular cichlid diversity observed today.
Sexual dimorphism in striped dolphin (Stenella coeruleoalba) crania from South Africa
Authors: Conry Danielle S. , Pistorius Pierre A. , Plön Stephanie , Hofmeyr G. J. Greg 
Published: July 2016

AbstractThis study assessed the extent of sexual dimorphism in striped dolphin (Stenella coeruleoalba) cranial size and shape off the South African coast. Dorsal and ventral features of 60 striped dolphin crania from both the western and eastern coasts of South Africa were analyzed using landmark‐based geometric morphometrics. Although there was no evidence of dimorphism in cranial size, evidence for small, but significant, variation in both dorsal and ventral cranial shape was found between the sexes. The observed dimorphism was partly associated with changes in shape around the temporal fossa, occipital condyle and supraoccipital bone, the nasal bone, and the paraoccipital process and basiocciptal. The temporal fossa serves as an attachment point for the temporal muscle, which functions to close the lower jaw, and the occipital area serves as the anterior insertion of the epaxial muscles, which power the upstroke of the flukes during swimming. Both the paraoccipital process and basiocciptal are associated with the functioning of the hyoid apparatus, which serves as an attachment point for muscles and ligaments involved in feeding and sound production. These findings suggest the possibility of differences in diet, foraging behavior, vocalizations, and locomotion between the sexes of this species.
Expression of the Theobroma cacao Bax‐inhibitor‐1 gene in tomato reduces infection by the hemibiotrophic pathogen Moniliophthora perniciosa
Authors: Scotton Danielle Camargo , Azevedo Mariana Da Silva , Sestari Ivan , Da Silva Jamille Santos , Souza Lucas Anjos , Peres Lázaro Eustáquio Pereira , Leal Gildemberg Amorim , Figueira Antonio 
Published: July 2016

SummaryProgrammed cell death (PCD) plays a key role in plant responses to pathogens, determining the success of infection depending on the pathogen lifestyle and on which participant of the interaction triggers cell death. The hemibiotrophic basidiomycete Moniliophthora perniciosa is the causal agent of witches' broom disease of Theobroma cacao L. (cacao), a serious constraint for production in South America and the Caribbean. It has been hypothesized that M. perniciosa pathogenesis involves PCD, initially as a plant defence mechanism, which is diverted by the fungus to induce necrosis during the dikaryotic phase of the mycelia. Here, we evaluated whether the expression of a cacao anti‐apoptotic gene would affect the incidence and severity of M. perniciosa infection using the ‘Micro‐Tom’ (MT) tomato as a model. The cacao Bax‐inhibitor‐1 (TcBI‐1) gene, encoding a putative basal attenuator of PCD, was constitutively expressed in MT to evaluate function. Transformants expressing TcBI‐1, when treated with tunicamycin, an inducer of endoplasmic reticulum stress, showed a decrease in cell peroxidation. When the same transformants were inoculated with the necrotrophic fungal pathogens Sclerotinia sclerotiorum, Sclerotium rolfsii and Botrytis cinerea, a significant reduction in infection severity was observed, confirming TcBI‐1 function. After inoculation with M. perniciosa, TcBI‐1 transformant lines showed a significant reduction in disease incidence compared with MT. The overexpression of TcBI‐1 appears to affect the ability of germinating spores to penetrate susceptible tissues, restoring part of the non‐host resistance in MT against the S‐biotype of M. perniciosa.
Development and evaluation of a real‐time polymerase chain reaction assay for the rapid detection of Talaromyces marneffei MP1 gene in human plasma
Authors: Hien Ha Thuc Ai , Thanh Tran Tan , Thu Nguyen Thi Mai , Nguyen Ashley , Thanh Nguyen Tat , Lan Nguyen Phu Huong , Simmons Cameron , Shikuma Cecilia , Chau Nguyen Van Vinh , Thwaites Guy , Le Thuy 
Published: July 2016

SummaryPenicilliosis caused by Talaromyces marneffei is a common AIDS‐defining illness in South and Southeast Asia. Diagnosis is based on culture which can take up to 14 days for identification, leading to treatment delay and increased mortality. We developed a TaqMan real‐time PCR assay targeting the MP1 gene encoding an abundant cell wall protein specific to T. marneffei. The assay's performance was evaluated in MP1‐containing plasmids, clinical isolates, and plasma from HIV‐infected patients with and without penicilliosis. The assay consistently detected 10 copies of MP1‐containing plasmids per reaction and 100 T. marneffei yeast cells per millilitre plasma. There were no amplification with seven other Penicillium species and six other HIV‐associated fungal pathogens tested. The assay was evaluated in 70 patients with AIDS: 50 patients with culture‐confirmed penicilliosis and 20 patients with opportunistic infections other than penicilliosis. The diagnostic sensitivity was 70.4% (19/27, 95% CI: 51.5–84.1%) and 52.2% (12/23, 95% CI: 33.0–70.8%) in plasma samples collected prior to and within 48 h of antifungal therapy respectively. The diagnostic specificity was 100% (20/20, 95% CI: 83.9–100%). This assay provides a useful tool for the rapid diagnosis of T. marneffei infection and has the potential to improve the management of patients with penicilliosis.
Bergmann's rule: a biophysiological rule examined in birds
Authors: Salewski Volker , Watt Cortney 
Published: July 2016

The most studied ecogeographic rule is Bergmann's rule, but aspects of the original paper are often presented incorrectly even though Bergmann (1847) is explicitly cited. The goal of this paper is to 1) summarize the contents of Bergmann's paper, supported by direct translations, and 2) to discuss the main issues surrounding Bergmann's rule based on Bergmann's intentions and early definitions of the rule.Although Bergmann himself never formulated an explicit rule, based on Bergmann's (1847) intentions and early definitions of Bergmann's rule, Bergmann's rule is: “Within species and amongst closely related species of homeothermic animals a larger size is often achieved in colder climates than in warmer ones, which is linked to the temperature budget of these animals.” Bergmann (1847) assumed that the surface area of an animal is a measure for heat dissipation and an animal's volume a measure of its heat production. As body size increases, an animal's surface area increases less than its volume; however, modifications in morphology and behaviour will also influence the temperature budget. Bergmann hypothesized that when everything but size is equal, the smaller animals should live in warmer areas. This was supported by empirical data on > 300 bird species belonging to 86 genera.Recommendations for use of the term Bergmann's rule include 1) inclusion of a thermoregulatory mechanism, 2) application only to homoeothermic animals, 3) but to any taxonomic group, 4) tests of the rule should test the assumption that larger animals have to produce less heat to increase body temperatures, and 5) future authors should either go back to the original publication (Bergmann 1847) when referring to it or simply not cite it at all.SynthesisBased on Bergmann's (1847) intentions and early definitions, Bergmann's rule is: “Within species and amongst closely related species of homeothermic animals a larger size is often achieved in colder climates than in warmer ones, which is linked to the temperature budget of these animals.” Recommendations for use of the term Bergmann's rule include 1) inclusion of a thermoregulatory mechanism, 2) application only to homoeothermic animals, 3) and to any taxonomic group, 4) tests of the rule should examine whether larger animals have to produce less heat to increase body temperatures, and 5) authors should go back to the original publication (Bergmann 1847) when referring to it.
Medulloblastoma with epithelioid features in the cerebellar vermis
Authors: Miyata Kenji , Hori Toshinori , Yamakawa Kiyoshi , Takasu Michihiko , Hayakawa Tomohito , Shimomura Yasuto , Iwata Atsuko , Okumura Akihisa , Nakura Takahiro , Jyoko Masahiro , Mori Yoshimasa , Takahashi Emiko , Hirato Junko 
Published: July 2016

AbstractA 6‐year‐old girl was admitted with a mass lesion in the cerebellar vermis. She underwent subtotal tumor resection, and on immunohistopathology the tumor consisted of two different parts: typical medulloblastoma (MB) characteristics and atypical teratoid/rhabdoid tumor (AT/RT) features, despite positive integrase interactor 1 expression. The patient was diagnosed with MB with epithelioid features. Chemoradiation therapy was started because of tumor recurrence at the primary site and dissemination to the spinal cord, as determined on magnetic resonance imaging 2 weeks after surgery. The patient died due to tumor progression 13 months after initial diagnosis, although transient partial remission was achieved.