bluuebunny/crossref_metadata_2025_split huggingface dataset:
Symmetric and Asymmetric Magnetic Tunnel Junctions with Embedded Nanoparticles: Effects of Size Distribution and Temperature on Tunneling Magnetoresistance and Spin Transfer Torque
Authors: Useinov Arthur , Lin Hsiu-Hau , Lai Chih-Huang 
Published: August 2017

AbstractThe problem of the ballistic electron tunneling is considered in magnetic tunnel junction with embedded non-magnetic nanoparticles (NP-MTJ), which creates additional conducting middle layer. The strong temperature impact was found in the system with averaged NP diameter dav < 1.8 nm. Temperature simulation is consistent with experimental observations showing the transition between dip and classical dome-like tunneling magnetoresistance (TMR) voltage behaviors. The low temperature approach also predicts step-like TMR and quantized in-plane spin transfer torque (STT) effects. The robust asymmetric STT respond is found due to voltage sign inversion in NP-MTJs with barrier asymmetry. Furthermore, it is shown how size distribution of NPs as well as quantization rules modify the spin-current filtering properties of the nanoparticles in ballistic regime. Different quantization rules for the transverse component of the wave vector are considered to overpass the dimensional threshold (dav ≈ 1.8 nm) between quantum well and bulk-assisted states of the middle layer.
Power-law scaling of calling dynamics in zebra finches
Authors: Ma Shouwen , Maat Andries Ter , Gahr Manfred 
Published: August 2017

AbstractSocial mammals and birds have a rich repertoire of communication calls. Some call types are uttered rarely but in specific contexts while others are produced in large numbers but are not linked to a specific context. An example for the latter is the “stack” call that zebra finches (Taeniopygia guttata) utter thousands of times per day in a seemingly erratic manner. We quantified this calling activity of captive zebra finches by using on-bird telemetric microphones that permitted a precise temporal resolution. We separated the calling interactions into the reactive and the self-contained calls. Despite a large dynamic range in the succession of calling events, the temporal distribution of the reactive and the self-contained callings was characterized by a power-law with exponents ranging between 2 and 3, which implies that all calls in that scale have similar dynamic patterns. As birds underwent physiological (water availability) and social (separation from the reproductive partner) changes, their calling dynamics changed. Power-law scaling provided an accurate description of these changes, such that the calling dynamics may inform about an individual’s physiological and/or social situations state, even though a single “stack” call has no predetermined meaning.
Intercalating and maintenance gefitinib plus chemotherapy versus chemotherapy alone in selected advanced non-small cell lung cancer with unknown EGFR status
Authors: Jian Hong , Li Wei , Ma Zhiyong , Huang Jianjin , Feng Jifeng , Song Yong , Gao Beili , Zhu Huili , Tao Min , Bai Chong , Ma Shenglin , Pan Hongming , Qin Shukui , Hua Dong , Yu Yongfeng , Lu Shun 
Published: August 2017

AbstractEpidermal growth factor receptor tyrosine-kinase inhibitors (EGFR-TKIs) are standard treatment for advanced non-small cell lung cancer (NSCLC) patients with epidermal growth factor receptor (EGFR) mutation. However, EGFR mutation testing is not attainable in approximately 20% of patients. The current study examined intercalating and maintaining gefitinib treatment in stage IIIB/IV non-squamous NSCLC, never or former light smoking patients with unknown EGFR mutation status. Briefly, 219 patients who achieved stable disease (SD) with gemcitabine (1250 mg/m2) plus carboplatin (5 AUC) were randomized at 1:1 ratio to continue chemotherapy (n = 110) or intercalating gefitinib (250 mg/day on days 15–25 of each cycle until disease progress (n = 109). Progression-free survival (PFS) was 9.7 vs. 4.2 month in the gefitinib vs. control arm (HR: 0.41, 95% CI: 0.31–0.56; P < 0.001). Overall survival (OS) was also longer in the gefitinib arm (20.1 vs. 15.4 months; HR: 0.68; 95% CI 0.48–0.97; P = 0.0323). Adverse events, including diarrhea, dermal reaction and thrombocytopenia, were more common in the gefitinib arm. In conclusion, intercalating and maintenance gefitinib treatment is a viable option for advanced NSCLC patients with unknown EGFR mutation status in subpopulations with high EFGR mutation rate.
In vivo and in vitro sex differences in the dendritic morphology of developing murine hippocampal and cortical neurons
Authors: Keil Kimberly P. , Sethi Sunjay , Wilson Machelle D. , Chen Hao , Lein Pamela J. 
Published: August 2017

AbstractAltered dendritic morphology is common in neurodevelopmental disorders (NDDs), many of which show sex biases in prevalence, onset and/or severity. However, whether dendritic morphology varies as a function of sex in juvenile mice or primary neuronal cell cultures is largely unknown even though both are widely used models for studying NDDs. To address this gap, we quantified dendritic morphology in CA1 pyramidal hippocampal and adjacent somatosensory pyramidal cortical neurons from male and female postnatal day (P)28 C57BL/6J mice. As determined by Sholl analysis of Golgi-stained brain sections, dendritic arbors of male hippocampal neurons are more complex than females. Conversely, dendritic morphology of female cortical neurons is more complex than males. In primary neuron-glia co-cultures from P0 mouse hippocampi, male neurons have more complex dendritic arbors than female neurons. Sex differences are less pronounced in cortical cultures. In vitro sex differences in dendritic morphology are driven in part by estrogen-dependent mechanisms, as evidenced by decreased dendritic complexity in male hippocampal neurons cultured in phenol red-free media or in the presence of an estrogen receptor antagonist. Evidence that sex influences dendritic morphogenesis in two models of neurodevelopment in a region-specific manner has significant mechanistic implications regarding sex biases in NDDs.
Viscoelastic Damping in alternate reciprocating contacts
Authors: Putignano Carmine , Carbone Giuseppe 
Published: August 2017

AbstractReciprocating motion between viscoelastic solids occurs in a number of systems and, in particular, in all the dampers which exploits, as a physical principle, the viscoelastic dissipation. So far, any attempt to predict the behavour of this field of dampers relies on approximate methodologies and, often, on a steady-state approach, with a consequent poor understanding of the phenomenon. Here, we develop a methodology capable of simulating the actual mechanics of the problem and, in particular, we shed light on how the presence of not fully relaxed viscoelastic regions, during the punch motion, determine the viscoelastic dissipation. The latter is shown to be dependent ultimately on two dimensionless parameters, i.e. the maximum speed in the cycle and the frequency. Finally, the importance of considering a rough interface is enlightened.
The BEACH Protein LRBA Promotes the Localization of the Heterotrimeric G-protein Golf to Olfactory Cilia
Authors: Kurtenbach Stefan , Gießl Andreas , Strömberg Siv , Kremers Jan , Atorf Jenny , Rasche Sebastian , Neuhaus Eva M. , Hervé Denis , Brandstätter Johann Helmut , Asan Esther , Hatt Hanns , Kilimann Manfred W. 
Published: August 2017

AbstractBEACH domain proteins are involved in membrane protein traffic and human diseases, but their molecular mechanisms are not understood. The BEACH protein LRBA has been implicated in immune response and cell proliferation, and human LRBA mutations cause severe immune deficiency. Here, we report a first functional and molecular phenotype outside the immune system of LRBA-knockout mice: compromised olfaction, manifesting in reduced electro-olfactogram response amplitude, impaired food-finding efficiency, and smaller olfactory bulbs. LRBA is prominently expressed in olfactory and vomeronasal chemosensory neurons of wild-type mice. Olfactory impairment in the LRBA-KO is explained by markedly reduced concentrations (20–40% of wild-type levels) of all three subunits αolf, β1 and γ13 of the olfactory heterotrimeric G-protein, Golf, in the sensory cilia of olfactory neurons. In contrast, cilia morphology and the concentrations of many other proteins of olfactory cilia are not or only slightly affected. LRBA is also highly expressed in photoreceptor cells, another cell type with a specialized sensory cilium and heterotrimeric G-protein-based signalling; however, visual function appeared unimpaired by the LRBA-KO. To our knowledge, this is the first observation that a BEACH protein is required for the efficient subcellular localization of a lipid-anchored protein, and of a ciliary protein.
Twin birth changes DNA methylation of subsequent siblings
Authors: Li Shuai , Kim Eunae , Wong Ee Ming , Joo Ji-Hoon Eric , Nguyen Tuong L. , Stone Jennifer , Song Yun-Mi , Flander Louisa B. , Saffery Richard , Giles Graham G. , Southey Melissa C. , Sung Joohon , Hopper John L. 
Published: August 2017

AbstractWe asked if twin birth influences the DNA methylation of subsequent siblings. We measured whole blood methylation using the HumanMethylation450 array for siblings from two twin and family studies in Australia and Korea. We compared the means and correlations in methylation between pairs of siblings born before a twin birth (BT siblings), born on either side of a twin birth (B/AT pairs) and born after a twin birth (AT siblings). For the genome-wide average DNA methylation, the correlation for AT pairs (rAT) was larger than the correlation for BT pairs (rBT) in both studies, and from the meta-analysis, rAT = 0.46 (95% CI: 0.26, 0.63) and rBT = −0.003 (95% CI: −0.30, 0.29) (P = 0.02). B/AT pairs were not correlated (from the meta-analysis rBAT = 0.08; 95% CI: −0.31, 0.45). Similar results were found for the average methylation of several genomic regions, e.g., CpG shelf and gene body. BT and AT pairs were differentially correlated in methylation for 15 probes (all P < 10−7), and the top 152 differentially correlated probes (at P < 10−4) were enriched in cell signalling and breast cancer regulation pathways. Our observations are consistent with a twin birth changing the intrauterine environment such that siblings both born after a twin birth are correlated in DNA methylation.
A primer on selecting grain boundary sets for comparison of interfacial fracture properties in molecular dynamics simulations
Authors: Dingreville Rémi , Aksoy Doruk , Spearot Douglas E. 
Published: August 2017

AbstractAll grain boundaries are not equal in their predisposition for fracture due to the complex coupling between lattice geometry, interfacial structure, and mechanical properties. The ability to understand these relationships is crucial to engineer materials resilient to grain boundary fracture. Here, a methodology is presented to isolate the role of grain boundary structure on interfacial fracture properties, such as the tensile strength and work of separation, using atomistic simulations. Instead of constructing sets of grain boundary models within the misorientation/structure space by simply varying the misorientation angle around a fixed misorientation axis, the proposed method creates sets of grain boundary models by means of isocurves associated with important fracture-related properties of the adjoining lattices. Such properties may include anisotropic elastic moduli, the Schmid factor for primary slip, and the propensity for simultaneous slip on multiple slip systems. This approach eliminates the effect of lattice properties from the comparative analysis of interfacial fracture properties and thus enables the identification of structure-property relationships for grain boundaries. As an example, this methodology is implemented to study crack propagation along Ni grain boundaries. Segregated H is used as a means to emphasize differences in the selected grain boundary structures while keeping lattice properties fixed.
Influence of beat-to-beat blood pressure variability on vascular elasticity in hypertensive population
Authors: Xia Yufa , Liu Xin , Wu Dan , Xiong Huahua , Ren Lijie , Xu Lin , Wu Wanqing , Zhang Heye 
Published: August 2017

AbstractWhether elevated beat-to-beat blood pressure variability (BPV) has an influence on vascular elasticity is confounded and poorly understood. This study hypothesized that the increased BPV could have an adverse effect on the vascular elasticity, as estimated by total arterial compliance (TAC), independent of blood pressure (BP) values. Beat-to-beat BP and TAC were measured in 81 hypertensive patients (experimental population) and in 80 normal adults (control population). Beat-to-beat BPV was assessed by standard deviation (SD), average real variability (ARV), residual standard deviation (RSD) and variation independent of mean (VIM). In experimental population, systolic BPV (SBPV) showed a significant correlation with TAC (SD, r = −0.326, p < 0.001; ARV, r = −0.277, p = 0.003; RSD, r = −0.382, p < 0.001; VIM, r = −0.274, p = 0.003); similarly, SD, RSD and VIM of diastolic BP (DBP) also showed explicit correlation with TAC (r = −0.255, p = 0.006; r = −0.289, p = 0.002; r = −0.219, p = 0.019; respectively). However, in the control population, neither SBPV nor diastolic BPV (DBPV) showed a significant correlation with TAC. Furthermore, in the experimental population, VIM of systolic BP (SBP) was also a determinant of TAC (β = −0.100, p = 0.040) independent of average SBP, DBP, age and body mass index. In conclusion, these data imply that beat-to-beat BPV, especially SBPV, shows an independent correlation with vascular elasticity in hypertensive population.
Nutritional status and the influence of TV consumption on female body size ideals in populations recently exposed to the media
Authors: Jucker Jean-Luc , Thornborrow Tracey , Beierholm Ulrik , Burt D. Michael , Barton Robert A. , Evans Elizabeth H. , Jamieson Mark A. , Tovée Martin J. , Boothroyd Lynda G. 
Published: August 2017

AbstractTelevision consumption influences perceptions of attractive female body size. However, cross-cultural research examining media influence on body ideals is typically confounded by differences in the availability of reliable and diverse foodstuffs. 112 participants were recruited from 3 Nicaraguan villages that differed in television consumption and nutritional status, such that the contribution of both factors could be revealed. Participants completed a female figure preference task, reported their television consumption, and responded to several measures assessing nutritional status. Communities with higher television consumption and/or higher nutritional status preferred thinner female bodies than communities with lower television consumption and/or lower nutritional status. Bayesian mixed models estimated the plausible range of effects for television consumption, nutritional status, and other relevant variables on individual preferences. The model explained all meaningful differences between our low-nutrition villages, and television consumption, after sex, was the most likely of these predictors to contribute to variation in preferences (probability mass >95% when modelling only variables with zero-order associations with preferences, but only 90% when modelling all possible predictors). In contrast, we found no likely link with nutritional status. We thus found evidence that where media access and nutritional status are confounded, media is the more likely predictor of body ideals.
Rapid phenotypic individualization of bacterial sister cells
Authors: Govers Sander K. , Adam Antoine , Blockeel Hendrik , Aertsen Abram 
Published: August 2017

AbstractA growing bacterium typically divides into two genetically identical and morphologically similar sister cells and eventually gives rise to a clonal population. Nevertheless, significant phenotypic differentiation among isogenic cells frequently occurs, with the resulting heterogeneity in cellular behavior often ensuring population level growth and survival in complex and unpredictable environments. Although several mechanisms underlying the generation of phenotypic heterogeneity have been elucidated, the speed with which identical sister cells tend to phenotypically diverge from each other has so far remained unaddressed. Using Escherichia coli as a model organism, we therefore examined the timing and dynamics of phenotypic individualization among sister cells by scrutinizing and modeling microscopically tracked clonally growing populations before and after a semi-lethal heat challenge. This analysis revealed that both survival probability and post-stress physiology of sister cells shift from highly similar to uncorrelated within the first decile of their cell cycles. This nearly-immediate post-fission randomization of sister cell fates highlights the potential of stochastic fluctuations during clonal growth to rapidly generate phenotypically independent individuals.
Enhancing Immune Responses to Cancer Vaccines Using Multi-Site Injections
Authors: Mould Robert C. , AuYeung Amanda W. K. , van Vloten Jacob P. , Susta Leonardo , Mutsaers Anthony J. , Petrik James J. , Wood Geoffrey A. , Wootton Sarah K. , Karimi Khalil , Bridle Byram W. 
Published: August 2017

AbstractFor a vaccine to be effective it must induce a sufficiently robust and specific immune response. Multi-site injection protocols can increase the titers of rabies virus-neutralizing antibodies. Hypothetically, spreading a vaccine dose across multiple lymphatic drainage regions could also potentiate T cell responses. We used a replication-deficient adenovirus serotype 5-vectored cancer vaccine targeting the melanoma-associated antigen dopachrome tautomerase. Clinically, high numbers of tumor-infiltrating CD8+ T cells are a positive prognostic indicator. As such, there is interest in maximizing tumor-specific T cell responses. Our findings confirm a positive correlation between the number of tumor-specific T cells and survival. More importantly, we show for the first time that using multiple injection sites could increase the number of vaccine-induced CD8+ T cells specific for a self-tumor antigen. Further, the number of tumor antigen-specific antibodies, as well CD8+ T cells specific for a foreign antigen could also be enhanced. Our results show that multi-site vaccination induces higher magnitude immune responses than a single-bolus injection. This provides a very simple and almost cost-free strategy to potentially improve the efficacy of any current and future vaccine. Broader clinical adoption of multi-site vaccination protocols for the treatment of cancers and infectious diseases should be given serious consideration.
Positively charged cyclodextrins as effective molecular transporters of active phosphorylated forms of gemcitabine into cancer cells
Authors: Rodriguez-Ruiz Violeta , Maksimenko Andrey , Salzano Giuseppina , Lampropoulou Maria , Lazarou Yannis G. , Agostoni Valentina , Couvreur Patrick , Gref Ruxandra , Yannakopoulou Konstantina 
Published: August 2017

AbstractPositively charged cyclodextrins (PCCDs) are molecular carriers of particular interest for their ability to readily enter into cancer cells. Of main interest, guanidino- and aminoalkyl- PCCDs can be conveniently synthesized and form stable and strong inclusion complexes with various active molecules bearing phosphate groups. We have addressed here the challenge to deliver into cancer cells phosphorylated gemcitabine drugs well known for their instability and inability to permeate cell membranes. NMR data corroborated by semiempirical theoretical calculations have shown that aminoalkyl-CDs form sufficiently stable complexes with both mono- and tri-phosphate forms of gemcitabine by simple mixing of the compounds in aqueous solution at physiological pH. Confocal microscopy and radioactivity counting experiments revealed that the developed systems enabled phosphorylated gemcitabine to penetrate efficiently into aggressive human breast cancer cells (MCF7), eventually leading to a substantial reduction of IC50 values. Moreover, compared to free drugs, phosphorylated metabolites of gemcitabine encapsulated in PCCDs displayed improved in vitro activities also on the aggressive human cancer cells CCRF-CEM Ara-C/8 C, a nucleoside transport-deficient T leukemia cell line. The current study offers the proof-of-principle that phosphorylated nucleoside drugs could be efficiently transported by PCCDs into cancer cells.
Two-color bursting oscillations
Authors: Kelleher Bryan , Tykalewicz Bogusław , Goulding David , Fedorov Nikita , Dubinkin Ilya , Erneux Thomas , Viktorov Evgeny A. 
Published: August 2017

AbstractNeurons communicate by brief bursts of spikes separated by silent phases and information may be encoded into the burst duration or through the structure of the interspike intervals. Inspired by the importance of bursting activities in neuronal computation, we have investigated the bursting oscillations of an optically injected quantum dot laser. We find experimentally that the laser periodically switches between two distinct operating states with distinct optical frequencies exhibiting either fast oscillatory or nearly steady state evolutions (two-color bursting oscillations). The conditions for their emergence and their control are analyzed by systematic simulations of the laser rate equations. By projecting the bursting solution onto the bifurcation diagram of a fast subsystem, we show how a specific hysteresis phenomenon explains the transitions between active and silent phases. Since size-controlled bursts can contain more information content than single spikes our results open the way to new forms of neuron inspired optical communication.
Rewiring of the FtsH regulatory network by a single nucleotide change in saeS of Staphylococcus aureus
Authors: Liu Qian , Hu Mo , Yeo Won-Sik , He Lei , Li Tianming , Zhu Yuanjun , Meng Hongwei , Wang Yanan , Lee Hyunwoo , Liu Xiaoyun , Li Min , Bae Taeok 
Published: August 2017

AbstractIn the Gram-positive pathogen Staphylococcus aureus, the membrane-bound ATP-dependent metalloprotease FtsH plays a critical role in resistance to various stressors. However, the molecular mechanism of the FtsH functions is not known. Here, we identified core FtsH target proteins in S. aureus. In the strains Newman and USA300, the abundance of 33 proteins were altered in both strains, of which 11 were identified as core FtsH substrate protein candidates. In the strain Newman and some other S. aureus strains, the sensor histidine kinase SaeS has an L18P (T53C in saeS) substitution, which transformed the protein into an FtsH substrate. Due to the increase of SaeS L18P in the ftsH mutant, Eap, a sae-regulon protein, was also increased in abundance, causing the Newman-specific cell-aggregation phenotype. Regardless of the strain background, however, the ftsH mutants showed lower virulence and survival in a murine infection model. Our study illustrates the elasticity of the bacterial regulatory network, which can be rewired by a single substitution mutation.