bluuebunny/crossref_metadata_2025_split huggingface dataset:
Magnetic field observations in CoFeB/Ta layers with 0.67-nm resolution by electron holography
Authors: Tanigaki Toshiaki , Akashi Tetsuya , Sugawara Akira , Miura Katsuya , Hayakawa Jun , Niitsu Kodai , Sato Takeshi , Yu Xiuzhen , Tomioka Yasuhide , Harada Ken , Shindo Daisuke , Tokura Yoshinori , Shinada Hiroyuki 
Published: November 2017

AbstractNanometre-scale magnetic field distributions in materials such as those at oxide interfaces, in thin layers of spintronics devices, and at boundaries in magnets have become important research targets in materials science and applied physics. Electron holography has advantages in nanometric magnetic field observations, and the realization of aberration correctors has improved its spatial resolution. Here we show the subnanometre magnetic field observations inside a sample at 0.67-nm resolution achieved by an aberration-corrected 1.2-MV holography electron microscope with a pulse magnetization system. A magnetization reduction due to intermixing in a CoFeB/Ta multilayer is analyzed by observing magnetic field and electrostatic potential distributions simultaneously. Our results demonstrate that high-voltage electron holography can be widely applied to pin-point magnetization analysis with structural and composition information in physics, chemistry, and materials science.
Penultimate deglacial warming across the Mediterranean Sea revealed by clumped isotopes in foraminifera
Authors: Rodríguez-Sanz L. , Bernasconi S. M. , Marino G. , Heslop D. , Müller I. A. , Fernandez A. , Grant K. M. , Rohling E. J. 
Published: November 2017

AbstractThe variability of seawater temperature through time is a critical measure of climate change, yet its reconstruction remains problematic in many regions. Mg/Ca and oxygen isotope (δ18OC) measurements in foraminiferal carbonate shells can be combined to reconstruct seawater temperature and δ18O (δ18OSW). The latter is a measure of changes in local hydrology (e.g., precipitation/evaporation, freshwater inputs) and global ice volume. But diagenetic processes may affect foraminiferal Mg/Ca. This restricts its potential in many places, including the Mediterranean Sea, a strategic region for deciphering global climate and sea-level changes. High alkalinity/salinity conditions especially bias Mg/Ca temperatures in the eastern Mediterranean (eMed). Here we advance the understanding of both western Mediterranean (wMed) and eMed hydrographic variability through the penultimate glacial termination (TII) and last interglacial, by applying the clumped isotope (Δ47) paleothermometer to planktic foraminifera with a novel data-processing approach. Results suggest that North Atlantic cooling during Heinrich stadial 11 (HS11) affected surface-water temperatures much more in the wMed (during winter/spring) than in the eMed (during summer). The method’s paired Δ47 and δ18OC data also portray δ18OSW. These records reveal a clear HS11 freshwater signal, which attenuated toward the eMed, and also that last interglacial surface warming in the eMed was strongly amplified by water-column stratification during the deposition of the organic-rich (sapropel) interval known as S5.
Greenhouse gases emissions in rivers of the Tibetan Plateau
Authors: Qu Bin , Aho Kelly Sue , Li Chaoliu , Kang Shichang , Sillanpää Mika , Yan Fangping , Raymond Peter A. 
Published: November 2017

AbstractGreenhouse gases (GHGs) emissions from streams are important to regional biogeochemical budgets. This study is one of the first to incorporate stream GHGs (CO2, CH4 and N2O) concentrations and emissions in rivers of the Tibetan Plateau. With one-time sampling from 32 sites in rivers of the plateau, we found that most of the rivers were supersaturated with CO2, CH4 and N2O during the study period. Medians of partial pressures of CO2 (pCO2), pCH4 and pN2O were presented 864 μatm, 6.3 μatm, and 0.25 μatm respectively. Based on a scaling model of the flux of gas, the calculated fluxes of CO2, CH4 and N2O (3,452 mg-C m2 d−1, 26.7 mg-C m2 d−1 and 0.18 mg-N m2 d−1, respectively) in rivers of the Tibetan Plateau were found comparable with most other rivers in the world; and it was revealed that the evasion rates of CO2 and CH4 in tributaries of the rivers of the plateau were higher than those in the mainstream despite its high altitude. Furthermore, concentrations of GHGs in the studied rivers were related to dissolved carbon and nitrogen, indicating that riverine dissolved components could be used to scale GHGs envision in rivers of the Tibetan Plateau.
MicroRNA regulation of Transthyretin in trophoblast differentiation and Intra-Uterine Growth Restriction
Authors: Saha Sarbani , Chakraborty Shreeta , Bhattacharya Agnihotri , Biswas Arati , Ain Rupasri 
Published: November 2017

AbstractPlacental trophoblast cells produce various cytokines, transporters vital to normal embryogenesis. Transthyretin (TTR) aids trans-placental passage of maternal thyroxin (TH) to fetal circulation. Inadequate TH delivery leads to developmental abnormality. Regulation of TTR biosynthesis in placenta is critical for normal embryo development. We showed here that TTR transcripts were expressed more in fetal placenta. Using bioinformatic analysis and confirmation with dual-luciferase reporter assays, we found that miR-200a-3p and miR-141-3p inhibited TTR expression by directly binding to the 3′UTR of TTR, which is reversed by mutation in the microRNA binding site. Differentiation of human trophoblast BeWo cells was associated with decreased TTR transcript and protein levels with concomitant increase in the levels of both microRNAs. Interestingly, ectopic overexpression of the microRNA mimics abrogated thyroxin uptake by BeWo cells, which was reversed by the corresponding inhibitors. Furthermore, in a rat model of intra-uterine growth restriction (IUGR), TTR expression decreased significantly in placenta with reciprocal rise in miR-141-3p but not 200a-3p. In human IUGR placenta, TTR transcript and protein levels were significantly lower associated with high expression of miR-141-3p but not 200a-3p. These data provides new insight into physiological role of miR-141-3p in regulating TTR during trophoblast differentiation and IUGR.
Aberrant brain response after auditory deviance in PTSD compared to trauma controls: An EEG study
Authors: Bangel Katrin A. , van Buschbach Susanne , Smit Dirk J. A. , Mazaheri Ali , Olff Miranda 
Published: November 2017

AbstractPart of the symptomatology of post-traumatic stress disorder (PTSD) are alterations in arousal and reactivity which could be related to a maladaptive increase in the automated sensory change detection system of the brain. In the current EEG study we investigated whether the brain’s response to a simple auditory sensory change was altered in patients with PTSD relative to trauma-exposed matched controls who did not develop the disorder. Thirteen male PTSD patients and trauma-exposed controls matched for age and educational level were presented with regular auditory pure tones (1000 Hz, 200 ms duration), with 11% of the tones deviating in both duration (50 ms) and frequency (1200 Hz) while watching a silent movie. Relative to the controls, patients who had developed PTSD showed enhanced mismatch negativity (MMN), increased theta power (5–7 Hz), and stronger suppression of upper alpha activity (13–15 Hz) after deviant vs. standard tones. Behaviourally, the alpha suppression in PTSD correlated with decreased spatial working memory performance suggesting it might reflect enhanced stimulus-feature representations in auditory memory. These results taken together suggest that PTSD patients and trauma-exposed controls can be distinguished by enhanced involuntary attention to changes in sensory patterns.
Impact of customary fluoride rinsing solutions on the pellicle’s protective properties and bioadhesion in situ
Authors: Kensche A. , Kirsch J. , Mintert S. , Enders F. , Pötschke S. , Basche S. , König B. , Hannig C. , Hannig M. 
Published: November 2017

AbstractThis study investigated the impact of customary fluoride based mouthrinses on the ultrastructure and the functional properties of the in situ pellicle, considering the prevention of erosion (8 volunteers) and initial biofilm formation (12 volunteers). Bovine enamel slabs were carried intraorally. After 1 min of pellicle formation, the subjects rinsed with elmex Kariesschutz (A), Dontodent Med Care (B), meridol (C) or elmex Zahnschmelzschutz Professional (D) for 1 min. In situ pellicle formation was continued up to 30 min/8 h before processing the slabs in vitro. Erosion was simulated by incubating the specimens in HCl (pH 3.0, 2.3, 2.0) for 120 s, measuring the kinetics of calcium/phosphate release photometrically; representative samples were evaluated by TEM and EDX. Bacterial adhesion was visualized fluorescence microscopically (DAPI/BacLight). Native enamel slabs or physiological pellicle samples served as controls. All investigated mouthrinses enhanced the erosion preventive pellicle effect in dependence of the pH-value. A significant decrease of Ca/P release at all pH values was achieved after rinsing with D; TEM/EDX confirmed ultrastructural pellicle modifications. All mouthrinses tendentially reduced bacterial adherence, however not significantly. The mouthrinse containing NaF/AmF/SnCl2 (D) offers an effective oral hygiene supplement to prevent caries and erosion.
Observability of Complex Systems: Finding the Gap
Authors: Stigter J. D. , Joubert D. , Molenaar J. 
Published: November 2017

AbstractFor a reconstruction of state and parameter values in a dynamic system model, first the question whether these values can be uniquely determined from the data must be answered. This structural model property is known as observability or, in case of parameter calibration only, identifiability. Testing a given model for observability is a well studied problem in the systems and control sciences. However, it is increasingly difficult, if not impossible, to address this property for large size models that, nowadays, are frequently used. We demonstrate the application of a recently developed algorithm that overcomes this problem and is remarkably efficient. As an illustration we show how an observability analysis for a Chinese Hamster Ovary Cell model (34 states, 117 parameters), a JAKSTAT signalling model (31 states, 51 parameters), and a MAP Kinase model (100 states, 88 parameters) can be established in a very short time.
A first assessment of Fraxinus excelsior (common ash) susceptibility to Hymenoscyphus fraxineus (ash dieback) throughout the British Isles
Authors: Stocks Jonathan J. , Buggs Richard J. A. , Lee Steve J. 
Published: November 2017

AbstractAsh dieback (ADB), caused by Hymenoscyphus fraxineus, has severely damaged a large proportion of ash trees (Fraxinus excelsior) in continental Europe. We have little damage data for the British Isles where the disease was found only five years ago in the Southeast, and is still spreading. A large-scale screening trial to evaluate ADB damage to provenances of F. excelsior sourced from throughout the British Isles was planted in 2013 in the southeast of England. In 2016, we scored trees by their level of ADB damage observed in field at the two worst affected (based on assessments in 2015) of the 14 sites. Significant differences were found in average ADB damage among planting sites and seed source provenances. Trees from certain provenances in Scotland were the least damaged by ADB, whereas trees from Wales and Southeast England were the most badly damaged in both trial sites. Thus the levels of ADB damage currently seen in ash populations in Southeast England may not be an accurate predictor of the damage expected in future throughout the British Isles. Given all provenances contained some healthy trees, a breeding programme to produce genetically variable native ash tree populations with lower ADB susceptibility may be feasible.
The Systemic Response to Topical Aldara Treatment is Mediated Through Direct TLR7 Stimulation as Imiquimod Enters the Circulation
Authors: Nerurkar Louis , McColl Alison , Graham Gerard , Cavanagh Jonathan 
Published: November 2017

AbstractTopical application of Aldara cream, containing the Toll-like receptor 7/8 agonist Imiquimod, is a widely used mouse model for investigating the pathogenesis of psoriasis. We have previously used this model to study the effects of peripheral inflammation on the brain, and reported a brain-specific response characterised by increased transcription, infiltration of immune cells and anhedonic-like behavior. Here, we perform a more robust characterisation of the systemic response to Aldara application and find a potent but transient response in the periphery, followed by a prolonged response in the brain. Mass spectrometry analysis of plasma and brain samples identified significant levels of Imiquimod in both compartments at molar concentrations likely to evoke a biological response. Indeed, the association of Imiquimod with the brain correlated with increased Iba1 and GFAP staining, indicative of microglia and astrocyte reactivity. These results highlight the potency of this model and raise the question of how useful it is for interpreting the systemic response in psoriasis-like skin inflammation. In addition, the potential impact on the brain should be considered with regards to human use and may explain why fatigue, headaches and nervousness have been reported as side effects following prolonged Aldara use.
Phylogeography reveals a potential cryptic invasion in the Southern Hemisphere of Ceratophyllum demersum, New Zealand’s worst invasive macrophyte
Authors: Hyldgaard Benita , Lambertini Carla , Brix Hans 
Published: November 2017

AbstractCeratophyllum demersum(common hornwort) is presently considered the worst invasive submerged aquatic macrophyte in New Zealand. We explored the global phylogeographic pattern of the species, based on chloroplast and nuclear DNA, in order to identify the origin of the invasive populations in New Zealand and to clarify if there were multiple introductions. The phylogeographic study identified geographically differentiated gene pools in North America, tropical Asia, Australia, and South Africa, likely native to these regions, and a recent dispersal event of a Eurasian-related haplotype to North America, New Zealand, Australia, and South Africa. At least two different invasive genotypes of this Eurasian-related haplotype have been found in New Zealand. One genotype is closely related to genotypes in Australia and South Africa, while we could not trace the closest relatives of the other genotype within ourC. demersumsample set. Contrasting spectra of genetic distances in New Zealand and in a region within the native range (Denmark), suggest that the invasive population was founded by vegetative reproduction, seen as low genetic distances among genotypes. We also discovered the introduction of the same Eurasian-related haplotype in Australia and South Africa and that a cryptic invasion may be occurring in these continents.
Probing spatial heterogeneity in silicon thin films by Raman spectroscopy
Authors: Yamazaki Hideyuki , Koike Mitsuo , Saitoh Masumi , Tomita Mitsuhiro , Yokogawa Ryo , Sawamoto Naomi , Tomita Motohiro , Kosemura Daisuke , Ogura Atsushi 
Published: November 2017

AbstractRaman spectroscopy is a powerful technique for revealing spatial heterogeneity in solid-state structures but heretofore has not been able to measure spectra from multiple positions on a sample within a short time. Here, we report a novel Raman spectroscopy approach to study the spatial heterogeneity in thermally annealed amorphous silicon (a-Si) thin films. Raman spectroscopy employs both a galvano-mirror and a two-dimensional charge-coupled device detector system, which can measure spectra at 200 nm intervals at every position along a sample in a short time. We analyzed thermally annealed a-Si thin films with different film thicknesses. The experimental results suggest a correlation between the distribution of the average nanocrystal size over different spatial regions and the thickness of the thermally annealed a-Si thin film. The ability to evaluate the average size of the Si nanocrystals through rapid data acquisition is expected to lead to research into new applications of nanocrystals.
A novel role for OATP2A1/SLCO2A1 in a murine model of colon cancer
Authors: Nakanishi Takeo , Ohno Yasuhiro , Aotani Rika , Maruyama Shio , Shimada Hiroaki , Kamo Shunsuke , Oshima Hiroko , Oshima Masanobu , Schuetz John D. , Tamai Ikumi 
Published: November 2017

AbstractProstaglandin E2 (PGE2) is associated with proliferation and angiogenesis in colorectal tumours. The role of prostaglandin transporter OATP2A1/SLCO2A1 in colon cancer tumorogenesis is unknown. We evaluated mice of various Slco2a1 genotypes in a murine model of colon cancer, the adenomatous polyposis (APC) mutant (Apc
∆716/+) model. Median lifespan was significantly extended from 19 weeks in Slco2a1+/+/Apc
Δ716/+ mice to 25 weeks in Slco2a1−/−/Apc
Δ716/+ mice. Survival was directly related to a reduction in the number of large polyps in the Slco2a1−/−/Apc
∆716/+ compared to the Slco2a1+/+/Apc
Δ716/+ or Slco2a1+/−/Apc
Δ716/+mice. The large polyps from the Slco2a1−/−/Apc
∆716/+ mice had significant reductions in microvascular density, consistent with the high expression of Slco2a1 in the tumour-associated vascular endothelial cells. Chemical suppression of OATP2A1 function significantly reduced tube formation and wound-healing activity of PGE2 in human vascular endothelial cells (HUVECs) although the amount of extracellular PGE2 was not affected by an OATP2A1 inhibitor. Further an in vivo model of angiogenesis, showed a significant reduction of haemoglobin content (54.2%) in sponges implanted into Slco2a1−/−, compared to wildtype mice. These studies indicate that OATP2A1 is likely to promote tumorogenesis by PGE2 uptake into the endothelial cells, suggesting that blockade of OATP2A1 is an additional pharmacologic strategy to improve colon cancer outcomes.
Computational and NMR spectroscopy insights into the conformation of cyclic di-nucleotides
Authors: Wang Baifan , Wang Zhenghua , Javornik Uroš , Xi Zhen , Plavec Janez 
Published: November 2017

AbstractCyclic di-nucleotides (CDNs) are second messengers in bacteria and metazoan that are as such controlling important biological processes. Here the conformational space of CDNs was explored systematically by a combination of extensive conformational search and DFT calculations as well as NMR methods. We found that CDNs adopt pre-organized conformations in solution in which the ribose conformations are North type and glycosidic bond conformations are anti type. The overall flexibility of CDNs as well as the backbone torsion angles depend on the cyclization of the phosphodiester bond. Compared to di-nucleotides, CDNs display high rigidity in the macrocyclic moieties. Structural comparison studies demonstrate that the pre-organized conformations of CDNs highly resemble the biologically active conformations. These findings provide information for the design of small molecules to modulate CDNs signalling pathways in bacteria or as vaccine adjuvants. The rigidity of the backbone of CDNs enables the design of high order structures such as molecular cages based on CDNs analogues.
Memory effect behavior with respect to the crystal grain size in the organic-inorganic hybrid perovskite nonvolatile resistive random access memory
Authors: Heo Jin Hyuck , Shin Dong Hee , Moon Sang Hwa , Lee Min Ho , Kim Do Hun , Oh Seol Hee , Jo William , Im Sang Hyuk 
Published: November 2017

AbstractThe crystal grain size of CH3NH3PbI3 (MAPbI3) organic-inorganic hybrid perovskite (OHP) film was controllable in the range from ~60 nm to ~600 nm by non-solvents inter-diffusion controlled crystallization process in dripping crystallization method for the formation of perovskite film. The MAPbI3 OHP non-volatile resistive random access memory with ~60 nm crystal grain size exhibited >0.1 TB/in2 storage capacity, >600 cycles endurance, >104 s data retention time, ~0.7 V set, and ~−0.61 V re-set bias voltage.
Strong localization of oxidized Co3+ state in cobalt-hexacyanoferrate
Authors: Niwa Hideharu , Takachi Masamitsu , Okamoto Jun , Wu Wen-Bin , Chu Yen-Yi , Singh Amol , Huang Di-Jing , Moritomo Yutaka 
Published: November 2017

AbstractSecondary batteries are important energy storage devices for a mobile equipment, an electric car, and a large-scale energy storage. Nevertheless, variation of the local electronic state of the battery materials in the charge (or oxidization) process are still unclear. Here, we investigated the local electronic state of cobalt-hexacyanoferrate (Na
x
Co[Fe(CN)6]0.9), by means of resonant inelastic X-ray scattering (RIXS) with high energy resolution (~100 meV). The L-edge RIXS is one of the most powerful spectroscopic technique with element- and valence-selectivity. We found that the local electronic state around Co2+ in the partially-charged Na1.1Co2+0.5Co3+0.5[Fe2+(CN)6]0.9 film (x = 1.1) is the same as that of the discharged Na1.6Co2+[Fe2+(CN)6]0.9 film (x = 1.6) within the energy resolution, indicating that the local electronic state around Co2+ is invariant against the partial oxidization. In addition, the local electronic state around the oxidized Co3+ is essentially the same as that of the fully-charged film Co3+[Fe2+(CN)6]0.3[Fe3+(CN)6]0.6 (x = 0.0) film. Such a strong localization of the oxidized Co3+ state is advantageous for the reversibility of the redox process, since the localization reduces extra reaction within the materials and resultant deterioration.
Exploration of Hand Grasp Patterns Elicitable Through Non-Invasive Proximal Nerve Stimulation
Authors: Shin Henry , Watkins Zach , Hu Xiaogang 
Published: November 2017

AbstractVarious neurological conditions, such as stroke or spinal cord injury, result in an impaired control of the hand. One method of restoring this impairment is through functional electrical stimulation (FES). However, traditional FES techniques often lead to quick fatigue and unnatural ballistic movements. In this study, we sought to explore the capabilities of a non-invasive proximal nerve stimulation technique in eliciting various hand grasp patterns. The ulnar and median nerves proximal to the elbow joint were activated transcutanously using a programmable stimulator, and the resultant finger flexion joint angles were recorded using a motion capture system. The individual finger motions averaged across the three joints were analyzed using a cluster analysis, in order to classify the different hand grasp patterns. With low current intensity (<5 mA and 100 µs pulse width) stimulation, our results show that all of our subjects demonstrated a variety of consistent hand grasp patterns including single finger movement and coordinated multi-finger movements. This study provides initial evidence on the feasibility of a proximal nerve stimulation technique in controlling a variety of finger movements and grasp patterns. Our approach could also be developed into a rehabilitative/assistive tool that can result in flexible movements of the fingers.