bluuebunny/crossref_metadata_2025_split huggingface dataset:
Strong Binding of Platelet Integrin αIIbβ3 to Fibrin Clots: Potential Target to Destabilize Thrombi
Authors: Höök Peter , Litvinov Rustem I. , Kim Oleg V. , Xu Shixin , Xu Zhiliang , Bennett Joel S. , Alber Mark S. , Weisel John W. 
Published: October 2017

AbstractThe formation of platelet thrombi is determined by the integrin αIIbβ3-mediated interactions of platelets with fibrinogen and fibrin. Blood clotting in vivo is catalyzed by thrombin, which simultaneously induces fibrinogen binding to αIIbβ3 and converts fibrinogen to fibrin. Thus, after a short time, thrombus formation is governed by αIIbβ3 binding to fibrin fibers. Surprisingly, there is little understanding of αIIbβ3 interaction with fibrin polymers. Here we used an optical trap-based system to measure the binding of single αIIbβ3 molecules to polymeric fibrin and compare it to αIIbβ3 binding to monomeric fibrin and fibrinogen. Like αIIbβ3 binding to fibrinogen and monomeric fibrin, we found that αIIbβ3 binding to polymeric fibrin can be segregated into two binding regimes, one with weaker rupture forces of 30–60 pN and a second with stronger rupture forces >60 pN that peaked at 70–80 pN. However, we found that the mechanical stability of the bimolecular αIIbβ3-ligand complexes had the following order: fibrin polymer > fibrin monomer > fibrinogen. These quantitative differences reflect the distinct specificity and underlying molecular mechanisms of αIIbβ3-mediated reactions, implying that targeting platelet interactions with fibrin could increase the therapeutic indices of antithrombotic agents by focusing on the destabilization of thrombi rather than the prevention of platelet aggregation.
The autophagy scaffold protein ALFY is critical for the granulocytic differentiation of AML cells
Authors: Schläfli Anna M. , Isakson Pauline , Garattini E. , Simonsen Anne , Tschan Mario P. 
Published: October 2017

AbstractAcute myeloid leukemia (AML) is a malignancy of myeloid progenitor cells that are blocked in differentiation. Acute promyelocytic leukemia (APL) is a rare form of AML, which generally presents with a t(15;17) translocation causing expression of the fusion protein PML-RARA. Pharmacological doses of all-trans retinoic acid (ATRA) induce granulocytic differentiation of APL cells leading to cure rates of >80% if combined with conventional chemotherapy. Autophagy is a lysosomal degradation pathway for the removal of cytoplasmic content and recycling of macromolecules. ATRA induces autophagy in ATRA-sensitive AML and APL cells and autophagy inhibition attenuates ATRA-triggered differentiation. In this study, we aimed at identifying if the autophagy-linked FYVE-domain containing protein (ALFY/WDFY3) is involved in autophagic degradation of protein aggregates contributes to ATRA therapy-induced autophagy. We found that ALFY mRNA levels increase significantly during the course of ATRA-induced differentiation of APL and AML cell lines. Importantly ALFY depletion impairs ATRA-triggered granulocytic differentiation of these cells. In agreement with its function in aggrephagy, knockdown of ALFY results in reduced ATRA-induced proteolysis. Our data further suggest that PML-RARα is an autophagy substrate degraded with the help of ALFY. In summary, we present a crucial role for ALFY in retinoid triggered maturation of AML cells.
Optical cryptography with biometrics for multi-depth objects
Authors: Yan Aimin , Wei Yang , Hu Zhijuan , Zhang Jingtao , Tsang Peter Wai Ming , Poon Ting-Chung 
Published: October 2017

AbstractWe propose an optical cryptosystem for encrypting images of multi-depth objects based on the combination of optical heterodyne technique and fingerprint keys. Optical heterodyning requires two optical beams to be mixed. For encryption, each optical beam is modulated by an optical mask containing either the fingerprint of the person who is sending, or receiving the image. The pair of optical masks are taken as the encryption keys. Subsequently, the two beams are used to scan over a multi-depth 3-D object to obtain an encrypted hologram. During the decryption process, each sectional image of the 3-D object is recovered by convolving its encrypted hologram (through numerical computation) with the encrypted hologram of a pinhole image that is positioned at the same depth as the sectional image. Our proposed method has three major advantages. First, the lost-key situation can be avoided with the use of fingerprints as the encryption keys. Second, the method can be applied to encrypt 3-D images for subsequent decrypted sectional images. Third, since optical heterodyning scanning is employed to encrypt a 3-D object, the optical system is incoherent, resulting in negligible amount of speckle noise upon decryption. To the best of our knowledge, this is the first time optical cryptography of 3-D object images has been demonstrated in an incoherent optical system with biometric keys.
Forecasting the onset and course of mental illness with Twitter data
Authors: Reece Andrew G. , Reagan Andrew J. , Lix Katharina L. M. , Dodds Peter Sheridan , Danforth Christopher M. , Langer Ellen J. 
Published: October 2017

AbstractWe developed computational models to predict the emergence of depression and Post-Traumatic Stress Disorder in Twitter users. Twitter data and details of depression history were collected from 204 individuals (105 depressed, 99 healthy). We extracted predictive features measuring affect, linguistic style, and context from participant tweets (N = 279,951) and built models using these features with supervised learning algorithms. Resulting models successfully discriminated between depressed and healthy content, and compared favorably to general practitioners’ average success rates in diagnosing depression, albeit in a separate population. Results held even when the analysis was restricted to content posted before first depression diagnosis. State-space temporal analysis suggests that onset of depression may be detectable from Twitter data several months prior to diagnosis. Predictive results were replicated with a separate sample of individuals diagnosed with PTSD (Nusers = 174, Ntweets = 243,775). A state-space time series model revealed indicators of PTSD almost immediately post-trauma, often many months prior to clinical diagnosis. These methods suggest a data-driven, predictive approach for early screening and detection of mental illness.
Preference for novel faces in male infant monkeys predicts cerebrospinal fluid oxytocin concentrations later in life
Authors: Madrid Jesus E. , Oztan Ozge , Sclafani Valentina , Del Rosso Laura A. , Calonder Laura A. , Chun Katie , Capitanio John P. , Garner Joseph P. , Parker Karen J. 
Published: October 2017

AbstractThe ability to recognize individuals is a critical skill acquired early in life for group living species. In primates, individual recognition occurs predominantly through face discrimination. Despite the essential adaptive value of this ability, robust individual differences in conspecific face recognition exist, yet its associated biology remains unknown. Although pharmacological administration of oxytocin has implicated this neuropeptide in face perception and social memory, no prior research has tested the relationship between individual differences in face recognition and endogenous oxytocin concentrations. Here we show in a male rhesus monkey cohort (N = 60) that infant performance in a task used to determine face recognition ability (specifically, the ability of animals to show a preference for a novel face) robustly predicts cerebrospinal fluid, but not blood, oxytocin concentrations up to five years after behavioural assessment. These results argue that central oxytocin biology may be related to individual face perceptual abilities necessary for group living, and that these differences are stable traits.
Properties analysis of transcription factor gene TasMYB36 from Trichoderma asperellum CBS433.97 and its heterogeneous transfomation to improve antifungal ability of Populus
Authors: Ji Shida , Wang Zhiying , Wang Jinjie , Fan Haijuan , Wang Yucheng , Liu Zhihua 
Published: October 2017

AbstractThe transcription of TasMYB36 in the biocontrol species T. asperellum was upregulated in four different pathogenic fermentation broths, suggesting that TasMYB36 plays an important role in the response to biotic stresses. Seventy-nine MYB transcription factors that were homologous to TasMYB36 from six sequenced Trichoderma genomes were analyzed. They were distributed in fourteen clades in the phylogenetic tree. The 79 MYBs contained 113 DNA binding domains, and their amino acid sequences were conserved and were different to those in plants. The promoters of 79 MYBs contained 1374 cis-regulators related to the stress response, such as GCR1 (17.5%) and GCN4 (15.5%). Subsequently, TasMYB36 was integrated into the genome of Populus davidiana × P. alba var. pyramidalis (PdPap poplar), and after co-culture of the transformants (PdPap-TasMYB36s) with Alternaria alternate, the transcription of genes in the jasmonic acid (JA) and salicylic acid (SA) hormone signaling pathways were upregulated; the POD, SOD and CAT activities were enhanced; and the reactive oxygen content was reduced in PdPap-TasMYB36s. The disease spots area on PdPap-TasMYB36s leaves infected by A. alternate were average 0.63% (PdPap-Con: 24.7%). In summary, TasMYB36 of T. asperellum CBS433.97 is an important defense response gene that upregulates other stress response genes and could improve resistance to biotic stresses.
Unified treatment of spin torques using a coupled magnetisation dynamics and three-dimensional spin current solver
Authors: Lepadatu Serban 
Published: October 2017

AbstractA three-dimensional spin current solver based on a generalised spin drift-diffusion description, including the bulk and interfacial spin Hall effects, is integrated with a magnetisation dynamics solver. The resulting model is shown to simultaneously reproduce the spin-orbit torques generated using the spin Hall effect, spin pumping torques generated by magnetisation dynamics in multilayers, as well as the spin transfer torques acting on magnetisation regions with spatial gradients, whilst field-like and spin-like torques are reproduced in a spin valve geometry. Two approaches to modelling interfaces are analysed, one based on the spin mixing conductance and the other based on continuity of spin currents where the spin dephasing length governs the absorption of transverse spin components. In both cases analytical formulas are derived for the spin-orbit torques in a heavy metal/ferromagnet bilayer geometry, showing in general both field-like and damping-like torques are generated. The limitations of the analytical approach are discussed, showing that even in a simple bilayer geometry, due to the non-uniformity of the spin currents, a full three-dimensional treatment is required. The model is further applied to the analysis of the spin Hall angle in Pt by reproducing published experimental ferromagnetic resonance data in the bilayer geometry.
Dispersal of thermophilic beetles across the intercontinental Arctic forest belt during the early Eocene
Authors: Brunke Adam J. , Chatzimanolis Stylianos , Metscher Brian D. , Wolf-Schwenninger Karin , Solodovnikov Alexey 
Published: October 2017

AbstractMassive biotic change occurred during the Eocene as the climate shifted from warm and equable to seasonal and latitudinally stratified. Mild winter temperatures across Arctic intercontinental land bridges permitted dispersal of frost-intolerant groups until the Eocene-Oligocene boundary, while trans-Arctic dispersal in thermophilic groups may have been limited to the early Eocene, especially during short-lived hyperthermals. Some of these lineages are now disjunct between continents of the northern hemisphere. Although Eocene climate change may have been one of the most important drivers of these ancient patterns in modern animal and plant distributions, its particular events are rarely implicated or correlated with group-specific climatic requirements. Here we explored the climatic and geological drivers of a particularly striking Neotropical-Oriental disjunct distribution in the rove beetle Bolitogyrus, a suspected Eocene relict. We integrated evidence from Eocene fossils, distributional and climate data, paleoclimate, paleogeography, and phylogenetic divergence dating to show that intercontinental dispersal of Bolitogyrus ceased in the early Eocene, consistent with the termination of conditions required by thermophilic lineages. These results provide new insight into the poorly known and short-lived Arctic forest community of the Early Eocene and its surviving lineages.
Non-Mendelian assortment of homologous autosomes of different sizes in males is the ancestral state in the Caenorhabditis lineage
Authors: Le Tho Son , Yang Fang-Jung , Lo Yun-Hua , Chang Tiffany C. , Hsu Jung-Chen , Kao Chia-Yi , Wang John 
Published: October 2017

AbstractOrganismal genome sizes vary by six orders of magnitude and appear positively correlated with organismal size and complexity. Neutral models have been proposed to explain the broad patterns of genome size variation based on organism population sizes. In the Caenorhabditis genus, hermaphrodite genomes are smaller than those of gonochoristic species. One possible driving force for this genome size difference could be non-random chromosome segregation. In Caenorhabditis elegans, chromosome assortment is non-independent and violates Mendel’s second law. In males, the shorter homologue of a heterozygous autosome pair preferentially co-segregates with the X chromosome while the longer one preferentially co-segregates with the nullo-X (O) chromosome in a process we call “skew”. Since hermaphrodites preferentially receive the shorter chromosomes and can start populations independently, their genome size would be predicted to decrease over evolutionary time. If skew is an important driver for genome size reduction in hermaphroditic Caenorhabditis species, then it should be present in all congeneric species. In this study, we tested this hypothesis and found that skew is present in all eight examined species. Our results suggest that skew is likely the ancestral state in this genus. More speculatively, skew may drive genome size patterns in hermaphroditic species in other nematodes.
Arctic cryosphere and Milankovitch forcing of Great Basin paleoclimate
Authors: Lachniet Matthew , Asmerom Yemane , Polyak Victor , Denniston Rhawn 
Published: October 2017

AbstractAlthough Great Basin paleoclimate history has been examined for more than a century, the orbital-scale paleoclimate forcings remain poorly understood. Here we show – by a detailed phasing analysis of a well-dated stalagmite δ18O time series – that Great Basin paleoclimate is linearly related to, but lagged, the 23,000 yr precession cycle in northern hemisphere summer insolation by an average of 3240 years (−900 to 6600 yr range) over the last two glacial cycles. We interpret these lags as indicating that Great Basin climate is sensitive to and indirectly forced by changes in the cryosphere, as evidenced by fast and strong linkages to global ice volume and Arctic paleoclimate indicators. Mid-latitude atmospheric circulation was likely impacted by a northward shifted storm track and higher pressure over the region arising from decreased sea ice and snow cover. Because anthropogenic warming is expected to reduce northern hemisphere snow and ice cover, continued increase in atmospheric greenhouse gases is likely to result in warming and drying over coming centuries that will amplify a warming trend that began ~2400 years ago.
Monocyte-lymphocyte cross-communication via soluble CD163 directly links innate immune system activation and adaptive immune system suppression following ischemic stroke
Authors: O’Connell Grant C. , Tennant Connie S. , Lucke-Wold Noelle , Kabbani Yasser , Tarabishy Abdul R. , Chantler Paul D. , Barr Taura L. 
Published: October 2017

AbstractCD163 is a scavenger receptor expressed on innate immune cell populations which can be shed from the plasma membrane via the metalloprotease ADAM17 to generate a soluble peptide with lympho-inhibitory properties. The purpose of this study was to investigate CD163 as a possible effector of stroke-induced adaptive immune system suppression. Liquid biopsies were collected from ischemic stroke patients (n = 39), neurologically asymptomatic controls (n = 20), and stroke mimics (n = 20) within 24 hours of symptom onset. Peripheral blood ADAM17 activity and soluble CD163 levels were elevated in stroke patients relative to non-stroke control groups, and negatively associated with post-stroke lymphocyte counts. Subsequentin vitroexperiments suggested that this stroke-induced elevation in circulating soluble CD163 likely originates from activated monocytic cells, as serum from stroke patients stimulated ADAM17-dependant CD163 shedding from healthy donor-derived monocytes. Additionalin vitroexperiments demonstrated that stroke-induced elevations in circulating soluble CD163 can elicit direct suppressive effects on the adaptive immune system, as serum from stroke patients inhibited the proliferation of healthy donor-derived lymphocytes, an effect which was attenuated following serum CD163 depletion. Collectively, these observations provide novel evidence that the innate immune system employs protective mechanisms aimed at mitigating the risk of post-stroke autoimmune complications driven by adaptive immune system overactivation, and that CD163 is key mediator of this phenomenon.
Self-assembly of a parallelogram black phosphorus ribbon into a nanotube
Authors: Shi Jiao , Cai Kun , Liu Ling-Nan , Qin Qing-Hua 
Published: October 2017

AbstractA nanotube from single-layer black phosphorus (BP) has never been discovered in experiments. The present study proposed a method for the fabrication of a BP nanotube (BPNT) from a parallelogram nanoribbon self-assembled on a carbon nanotube (CNT). The nanoribbon has a pair of opposite sides along the third principal direction. According to the numerical simulation via molecular dynamics approach, we discover that a wider BP nanoribbon can form into a series of chiral nanotube by self-assembly upon CNTs with different radii. The radius of a BPNT from the same ribbon has a wide range, and depends on both geometry of the ribbon and the CNT. One can obtain a BPNT with the specified radius by placing the ribbon nearby a given CNT. The method provides a clue for potential fabrication of BPNTs.
Classical swine fever virus nonstructural protein p7 modulates infectious virus production
Authors: Zhao Cheng , Shen Xiaofang , Wu Rui , Li Ling , Pan Zishu 
Published: October 2017

AbstractThe classical swine fever virus (CSFV) nonstructural protein p7 is crucial for virus production, yet precisely how the p7 modulates this process is unclear. In this study, we first identified the interactions of p7 with E2 and NS2. The key binding regions of both p7 and NS2 mapped to the first transmembrane (TM1) domain of two proteins. Three amino acid substitutions in the TM1 region of p7 (p7TDI18/19/20AAA, p7EVV21/22/23AAA and p7YFY25/26/30AAA) impaired infectious virus production and reduced the interaction of p7 with the NS2 protein. The E2p7 processing and mature p7, but not the E2p7 precursor, are essential for infectious virus production. Bicistronic mutants (pSM/E2/IRES) with single substitutions at residues 1 to 9 of p7 exhibited a significantly increased infectious CSFV titer compared to their counterparts in the context of pSM. Viral genomic RNA copies of the mutants exhibited similar levels compared with the wt CSFV. Our results demonstrated that CSFV p7 and its precursor E2p7 modulate viral protein interactions and infectious virus production without influencing viral RNA replication.
Perceived stress level and risk of cancer incidence in a Japanese population: the Japan Public Health Center (JPHC)-based Prospective Study
Authors: Song Huan , Saito Eiko , Sawada Norie , Abe Sarah K. , Hidaka Akihisa , Shimazu Taichi , Yamaji Taiki , Goto Atsushi , Iwasaki Motoki , Sasazuki Shizuka , Ye Weimin , Inoue Manami , Tsugane Shoichiro 
Published: October 2017

AbstractEvidence regarding stress as a risk factor for cancer onset is inconsistent. In this study, based on the Japan Public Health Center-based Prospective Study, we enrolled 101,708 participants aged 40–69 years from 1990–1994. The self-reported perceived stress level was collected at baseline and updated through 5-year follow-up. The association between perceived stress and cancer risk was measured by Cox proportional hazards regression model, adjusted for all known confounders. During follow-up (mean = 17.8 years), we identified 17,161 cancer cases. We found no association between baseline perceived stress level and cancer incidence. However, by taking account of the dynamic changes in perceived stress, time-varying analyses revealed a slightly (4–6%) increased overall cancer risk for subjects under elevated perceived stress levels compared to the ‘low stress level’ group. Analyses concerning long-term perceived stress level showed that individuals with constantly high perceived stress level had an 11% (95% confidence interval 1–22%) excess risk for cancer compared to subjects with persistently low stress levels. This association was confined to men (20% excess risk), and was particularly strong among smokers, alcohol drinkers, obese subjects, and subjects without family history of cancer. Therefore, we concluded high perceived stress level might contribute to excess overall cancer incidence among men.
The utility of bioenergetics modelling in quantifying predation rates of marine apex predators: Ecological and fisheries implications
Authors: Barnett A. , Braccini M. , Dudgeon C. L. , Payne N. L. , Abrantes K. G. , Sheaves M. , Snelling E. P. 
Published: October 2017

AbstractPredators play a crucial role in the structure and function of ecosystems. However, the magnitude of this role is often unclear, particularly for large marine predators, as predation rates are difficult to measure directly. If relevant biotic and abiotic parameters can be obtained, then bioenergetics modelling offers an alternative approach to estimating predation rates, and can provide new insights into ecological processes. We integrate demographic and ecological data for a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus, with energetics data from the literature, to construct a bioenergetics model to quantify predation rates on key fisheries species in Norfolk Bay, Australia. We account for the uncertainty in model parameters by incorporating parameter confidence through Monte Carlo simulations and running alternative variants of the model. Model and parameter variants provide alternative estimates of predation rates. Our simplest model estimates that ca. 1130 ± 137 N. cepedianus individuals consume 11,379 (95% CI: 11,111–11,648) gummy sharks Mustelus antarcticus (~21 tonnes) over a 36-week period in Norfolk Bay, which represents a considerable contribution to total predation mortality on this key fishery species. This study demonstrates how the integration of ecology and fisheries science can provide information for ecosystem and fisheries management.