bluuebunny/crossref_metadata_2025_split huggingface dataset:
Immobility responses are induced by photoactivation of single glomerular species responsive to fox odour TMT
Authors: Saito Harumi , Nishizumi Hirofumi , Suzuki Satoshi , Matsumoto Hideyuki , Ieki Nao , Abe Takaya , Kiyonari Hiroshi , Morita Masahiko , Yokota Hideo , Hirayama Nozomi , Yamazaki Takahiro , Kikusui Takefumi , Mori Kensaku , Sakano Hitoshi 
Published: July 2017

AbstractFox odour 2,4,5-trimethyl thiazoline (TMT) is known to activate multiple glomeruli in the mouse olfactory bulb (OB) and elicits strong fear responses. In this study, we screened TMT-reactive odourant receptors and identified Olfr1019 with high ligand reactivity and selectivity, whose glomeruli are located in the posterodorsal OB. In the channelrhodopsin knock-in mice for Olfr1019, TMT-responsive olfactory-cortical regions were activated by photostimulation, leading to the induction of immobility, but not aversive behaviour. Distribution of photoactivation signals was overlapped with that of TMT-induced signals, but restricted to the narrower regions. In the knockout mice, immobility responses were reduced, but not entirely abolished likely due to the compensatory function of other TMT-responsive glomeruli. Our results demonstrate that the activation of a single glomerular species in the posterodorsal OB is sufficient to elicit immobility responses and that TMT-induced fear may be separated into at least two different components of immobility and aversion.
The E3 ubiquitin ligase and RNA-binding protein ZNF598 orchestrates ribosome quality control of premature polyadenylated mRNAs
Authors: Garzia Aitor , Jafarnejad Seyed Mehdi , Meyer Cindy , Chapat Clément , Gogakos Tasos , Morozov Pavel , Amiri Mehdi , Shapiro Maayan , Molina Henrik , Tuschl Thomas , Sonenberg Nahum 
Published: July 2017

AbstractCryptic polyadenylation within coding sequences (CDS) triggers ribosome-associated quality control (RQC), followed by degradation of the aberrant mRNA and polypeptide, ribosome disassembly and recycling. Although ribosomal subunit dissociation and nascent peptide degradation are well-understood, the molecular sensors of aberrant mRNAs and their mechanism of action remain unknown. We studied the Zinc Finger Protein 598 (ZNF598) using PAR-CLIP and revealed that it cross-links to tRNAs, mRNAs and rRNAs, thereby placing the protein on translating ribosomes. Cross-linked reads originating from AAA-decoding tRNALys(UUU) were 10-fold enriched over its cellular abundance, and poly-lysine encoded by poly(AAA) induced RQC in a ZNF598-dependent manner. Encounter with translated polyA segments by ZNF598 triggered ubiquitination of several ribosomal proteins, requiring the E2 ubiquitin ligase UBE2D3 to initiate RQC. Considering that human CDS are devoid of >4 consecutive AAA codons, sensing of prematurely placed polyA tails by a specialized RNA-binding protein is a novel nucleic-acid-based surveillance mechanism of RQC.
Inhibitory effect of eugenol on seed germination and pre-harvest sprouting of hybrid rice (Oryza sativa L.)
Authors: Hu Qijuan , Lin Cheng , Guan Yajing , Sheteiwy Mohamed Salah , Hu Weimin , Hu Jin 
Published: July 2017

AbstractPre-harvest sprouting (PHS) is a constrain problem in hybrid rice production. The present study was conducted to investigate the inhibitory effect of eugenol on seed germination and PHS of hybrid rice variety (Qian You 1). The results showed that seed germination speed and the activities of α-amylase were inhibited by eugenol pre-soaking and these effects enhanced with the increasing of eugenol concentrations; while seedling growth was not negatively affected. In field trials, eugenol application caused a significant decline in PHS as compared with control, whereas no sustained inhibition in post-harvested seed germination was observed. The HPLC analysis indicated that eugenol raised the internal ABA content by 1–4 times more than control, and seeds treated with eugenol had relatively lower OsABA8OH2 and higher transcript levels of OsNCED2 expression during early stages of seed imbibitions. In addition, seed germinated faster after GA3 application than eugenol alone, and seed endogenous ABA content decreased obviously. It suggested that eugenol strongly delayed seed germination and the PHS in the field, which might be mainly due to the increased ABA contents caused by eugenol. However, the phenomenon of delayed germination and high ABA content caused by eugenol could be effectively recovered by exogenous GA3.
Frequency conversion in ultrastrong cavity QED
Authors: Kockum Anton Frisk , Macrì Vincenzo , Garziano Luigi , Savasta Salvatore , Nori Franco 
Published: July 2017

AbstractWe propose a new method for frequency conversion of photons which is both versatile and deterministic. We show that a system with two resonators ultrastrongly coupled to a single qubit can be used to realise both single- and multiphoton frequency-conversion processes. The conversion can be exquisitely controlled by tuning the qubit frequency to bring the desired frequency-conversion transitions on or off resonance. Considering recent experimental advances in ultrastrong coupling for circuit QED and other systems, we believe that our scheme can be implemented using available technology.
Freezing response-independent facilitation of fear extinction memory in the prefrontal cortex
Authors: Hong Jiso , Kim Daesoo 
Published: July 2017

AbstractThe infralimbic cortex (IL) is known to facilitate the formation of extinction memory through reciprocal interactions with the amygdala, which produces fear responses such as freezing. Thus, whether presynaptic input from the amygdala and post-synaptic output of IL neurons are functionally dissociated in extinction memory formation remains unclear. Here, we demonstrated that photostimulation of IL inputs from BLA did not change freezing responses to conditioned stimuli (CS) during training, but did facilitate extinction memory, measured as a reduction in freezing responses to the CS 1 day later. On the other hand, photostimulation of somata of IL neurons induced an immediate reduction in freezing to CS, but this did not affect extinction memory tested the next day. These results provide in vivo evidence for IL-dependent facilitation of extinction memory without post-synaptic modulation of freezing circuits.
Impairment of Neuroplasticity in the Dorsolateral Prefrontal Cortex by Alcohol
Authors: Loheswaran Genane , Barr Mera S. , Zomorrodi Reza , Rajji Tarek K. , Blumberger Daniel M. , Le Foll Bernard , Daskalakis Zafiris J. 
Published: July 2017

Abstract
Previous studies have demonstrated that alcohol consumption impairs neuroplasticity in the motor cortex. However, it is unknown whether alcohol produces a similar impairment of neuroplasticity in the dorsolateral prefrontal cortex (DLPFC), a brain region that plays an important role in cognitive functioning. The aim of the current study was to evaluate the effect of alcohol intoxication on neuroplasticity in the DLPFC. Paired associative stimulation (PAS) combined with electroencephalography (EEG) was used for the induction and measurement of associative LTP-like neuroplasticity in the DLPFC. Fifteen healthy subjects were administered PAS to the DLPFC following consumption of an alcohol (1.5 g/l of body water) or placebo beverage in a within-subject cross-over design. PAS induced neuroplasticity was indexed up to 60 minutes following PAS. Additionally, the effect of alcohol on PAS-induced potentiation of theta-gamma coupling (an index associated with learning and memory) was examined prior to and following PAS. Alcohol consumption resulted in a significant impairment of mean (t = 2.456, df = 13, p = 0.029) and maximum potentiation (t = −2.945, df = 13, p = 0.011) compared to the placebo beverage in the DLPFC and globally. Alcohol also suppressed the potentiation of theta-gamma coupling by PAS. Findings from the present study provide a potential neurophysiological mechanism for impairment of cognitive functioning by alcohol.
Transmission of highly virulent community-associated MRSA ST93 and livestock-associated MRSA ST398 between humans and pigs in Australia
Authors: Sahibzada S. , Abraham S. , Coombs G. W. , Pang S. , Hernández-Jover M. , Jordan D. , Heller J. 
Published: July 2017

AbstractPigs have been recognised as a reservoir of livestock associated methicillin-resistant Staphylococcus aureus (LA-MRSA) in Europe, Asia and North America. However, little is known about the presence and distribution of MRSA in the Australian pig population and pig industry. This study describes the presence, distribution and molecular characteristics of the human adapted Australian CA-MRSA ST93 isolated from pigs, people, and the environment within a piggery. Isolates were subjected to antibiotic susceptibility testing, DNA microarray, whole genome sequencing, multi locus sequence typing, virulence and resistance gene characterization and phylogenetic analysis. MRSA were isolated from 60% (n = 52) of farm workers where 84% of isolates returned ST93 and the rest ST398. Of the thirty-one pig isolates tested further, an equal number of ST398 and ST93 (15 each) and one as ST30-V were identified. Four of six environmental isolates were identified as ST93 and two as ST398. This study has identified for the first time in Australia the occurrence of CA-MRSA ST93 and LA-MRSA ST398 amongst farm workers, pigs, and the farm environment. Comparative genome analysis indicates that ST398 is likely to have been introduced into Australia from Europe or North America. This study also reports the first linezolid resistant MRSA isolated in Australia.
Spectral dependence of nonlinear absorption in ordered silver metallic nanoprism arrays
Authors: Sánchez-Esquivel Héctor , Raygoza-Sánchez Karen Y. , Rangel-Rojo Raúl , Gemo Emanuele , Michieli Niccolò , Kalinic Boris , Reyes-Esqueda Jorge Alejandro , Cesca Tiziana , Mattei Giovanni 
Published: July 2017

AbstractOrdered metallic nanoprism arrays have been proposed as novel and versatile systems for the observation of nonlinear effects such as nonlinear absorption. The study of the effect of the local field reinforcement on the fast optical third order nonlinear response around the Surface Plasmon Resonance is of great interest for many plasmonic applications. In this work, silver nanoprism arrays have been synthesized by the nanosphere lithography method. A low repetition rate tunable picosecond laser source was used to study the irradiance and wavelength dependence of the nonlinear absorption properties around the dipolar and quadrupolar resonances of the nanoarray with the use of the z-scan technique. The irradiance dependence of the on-resonance nonlinearity was studied, and a spectral region where nonlinear absorption is negligible was identified. This is important for the possible application of these materials in optical information processing devices.
Phenomenological Model for Defect Interactions in Irradiated Functional Materials
Authors: Brewer Steven J. , Cress Cory D. , Williams Samuel C. , Zhou Hanhan , Rivas Manuel , Rudy Ryan Q. , Polcawich Ronald G. , Glaser Evan R. , Jones Jacob L. , Bassiri-Gharb Nazanin 
Published: July 2017

AbstractThe ability to tailor the performance of functional materials, such as semiconductors, via careful manipulation of defects has led to extraordinary advances in microelectronics. Functional metal oxides are no exception – protonic-defect-conducting oxides find use in solid oxide fuel cells (SOFCs) and oxygen-deficient high-temperature superconductors are poised for power transmission and magnetic imaging applications. Similarly, the advantageous functional responses in ferroelectric materials that make them attractive for use in microelectromechanical systems (MEMS), logic elements, and environmental energy harvesting, are derived from interactions of defects with other defects (such as domain walls) and with the lattice. Chemical doping has traditionally been employed to study the effects of defects in functional materials, but complications arising from compositional heterogeneity often make interpretation of results difficult. Alternatively, irradiation is a versatile means of evaluating defect interactions while avoiding the complexities of doping. Here, a generalized phenomenological model is developed to quantify defect interactions and compare material performance in functional oxides as a function of radiation dose. The model is demonstrated with historical data from literature on ferroelectrics, and expanded to functional materials for SOFCs, mixed ionic-electronic conductors (MIECs), He-ion implantation, and superconductors. Experimental data is used to study microstructural effects on defect interactions in ferroelectrics.
Integrative Profiling of Bee Communities from Habitats of Tropical Southern Yunnan (China)
Authors: Liu X. W. , Chesters D. , Dai Q. Y. , Niu Z. Q. , Beckschäfer P. , Martin K. , Zhu C. D. 
Published: July 2017

AbstractUnderstanding and managing pollination service is hindered by taxonomic impediments and paucity of data, particularly in the tropics. Herein we apply integrative species delineation and taxonomy to test impacts of land use on the diversity of bee communities within Xishuangbanna (Yunnan, south China), a highly biodiverse tropical region which has undergone extensive land conversion to rubber plantation. 128 Operational Taxonomic Units (OTU) were inferred by an iterative and integrative approach. Bee activity differed significantly across land use samples, although community composition corresponded more to level of vegetation density, when accounting for spatial structure. Species diversity was high in young rubber plantations, although composition overlapped with other species-rich habitats (natural forest edge and river banks), and older plantations (>8 years) showed very low diversity under all measures. Community structures were similar between the natural forest interior and edge, although analysis indicated contrasting drivers of diversity, with clustering in the interior and overdispersion in the forest edge. Further, phylogenetic diversity and derived indices were underestimated when reference data were omitted from analysis. The description of bee communities herein permits more informed choices in land management with respect to ensuring continuation of essential services by bees.
Dome-like behaviour at Mt. Etna: The case of the 28 December 2014 South East Crater paroxysm
Authors: Ferlito C. , Bruno V. , Salerno G. , Caltabiano T. , Scandura D. , Mattia M. , Coltorti M. 
Published: July 2017

AbstractOn the 28 December 2014, a violent and short paroxysmal eruption occurred at the South East Crater (SEC) of Mount Etna that led to the formation of huge niches on the SW and NE flanks of the SEC edifice from which a volume of ~3 × 106 m3 of lava was erupted. Two basaltic lava flows discharged at a rate of ~370 m3/s, reaching a maximum distance of ~5 km. The seismicity during the event was scarce and the eruption was not preceded by any notable ground deformation, which instead was dramatic during and immediately after the event. The SO2 flux associated with the eruption was relatively low and even decreased few days before. Observations suggest that the paroxysm was not related to the ascent of volatile-rich fresh magma from a deep reservoir (dyke intrusion), but instead to a collapse of a portion of SEC, similar to what happens on exogenous andesitic domes. The sudden and fast discharge eventually triggered a depressurization in the shallow volcano plumbing system that drew up fresh magma from depth. Integration of data and observations has allowed to formulate a novel interpretation of mechanism leading volcanic activity at Mt. Etna and on basaltic volcanoes worldwide.
Vertical sleeve gastrectomy reverses diet-induced gene-regulatory changes impacting lipid metabolism
Authors: Du Juan , Tian Jingyan , Ding Lili , Trac Candi , Xia Brian , Sun Siming , Schones Dustin E. , Huang Wendong 
Published: July 2017

AbstractVertical sleeve gastrectomy (VSG) produces sustainable weight loss, remission of type 2 diabetes (T2D), and improvement of nonalcoholic fatty liver disease (NAFLD). However, the molecular mechanisms underlying the metabolic benefits of VSG have remained elusive. According to our previous results, diet-induced obesity induces epigenetic modifications to chromatin in mouse liver. We demonstrate here that VSG in C57BL/6J wild-type male mice can reverse these chromatin modifications and thereby impact the expression of key metabolic genes. Genes involved in lipid metabolism, especially omega-6 fatty acid metabolism, are up-regulated in livers of mice after VSG while genes in inflammatory pathways are down-regulated after VSG. Consistent with gene expression changes, regulatory regions near genes involved in inflammatory response displayed decreased chromatin accessibility after VSG. Our results indicate that VSG induces global regulatory changes that impact hepatic inflammatory and lipid metabolic pathways, providing new insight into the mechanisms underlying the beneficial metabolic effects induced by VSG.
Memristive neural network for on-line learning and tracking with brain-inspired spike timing dependent plasticity
Authors: Pedretti G. , Milo V. , Ambrogio S. , Carboni R. , Bianchi S. , Calderoni A. , Ramaswamy N. , Spinelli A. S. , Ielmini D. 
Published: July 2017

AbstractBrain-inspired computation can revolutionize information technology by introducing machines capable of recognizing patterns (images, speech, video) and interacting with the external world in a cognitive, humanlike way. Achieving this goal requires first to gain a detailed understanding of the brain operation, and second to identify a scalable microelectronic technology capable of reproducing some of the inherent functions of the human brain, such as the high synaptic connectivity (~104) and the peculiar time-dependent synaptic plasticity. Here we demonstrate unsupervised learning and tracking in a spiking neural network with memristive synapses, where synaptic weights are updated via brain-inspired spike timing dependent plasticity (STDP). The synaptic conductance is updated by the local time-dependent superposition of pre- and post-synaptic spikes within a hybrid one-transistor/one-resistor (1T1R) memristive synapse. Only 2 synaptic states, namely the low resistance state (LRS) and the high resistance state (HRS), are sufficient to learn and recognize patterns. Unsupervised learning of a static pattern and tracking of a dynamic pattern of up to 4 × 4 pixels are demonstrated, paving the way for intelligent hardware technology with up-scaled memristive neural networks.
Mercury spikes suggest volcanic driver of the Ordovician-Silurian mass extinction
Authors: Gong Qing , Wang Xiangdong , Zhao Laishi , Grasby Stephen E. , Chen Zhong-Qiang , Zhang Lei , Li Yang , Cao Ling , Li Zhihong 
Published: July 2017

AbstractThe second largest Phanerozoic mass extinction occurred at the Ordovician-Silurian (O-S) boundary. However, unlike the other major mass extinction events, the driver for the O-S extinction remains uncertain. The abundance of mercury (Hg) and total organic carbon (TOC) of Ordovician and early Silurian marine sediments were analyzed from four sections (Huanghuachang, Chenjiahe, Wangjiawan and Dingjiapo) in the Yichang area, South China, as a test for evidence of massive volcanism associated with the O-S event. Our results indicate the Hg concentrations generally vary in parallel with TOC, and that the Hg/TOC ratios remain low and steady state through the Early and Middle Ordovician. However, Hg concentrations and the Hg/TOC ratio increased rapidly in the Late Katian, and have a second peak during the Late Hirnantian (Late Ordovician) that was temporally coincident with two main pulses of mass extinction. Hg isotope data display little to no variation associated with the Hg spikes during the extinction intervals, indicating that the observed Hg spikes are from a volcanic source. These results suggest intense volcanism occurred during the Late Ordovician, and as in other Phanerozoic extinctions, likely played an important role in the O-S event.
Highly efficient multicolor multifocus microscopy by optimal design of diffraction binary gratings
Authors: Hajj Bassam , Oudjedi Laura , Fiche Jean-Bernard , Dahan Maxime , Nollmann Marcelo 
Published: July 2017

AbstractMultifocus microscopy (MFM) allows sensitive and fast three-dimensional imaging. It relies on the efficient design of diffraction phase gratings yielding homogeneous intensities in desired diffraction orders. Such performances are however guaranteed only for a specific wavelength. Here, we discuss a novel approach for designing binary phase gratings with dual color properties and improved diffraction efficiency for MFM. We simulate binary diffraction gratings with tunable phase shifts to explore its best diffraction performances. We report the design and fabrication of a binary array generator of 3 × 3 equal-intensity diffraction orders with 74% efficiency, 95% uniformity and dual color capability. The multicolor properties of this new design are highlighted by two-color MFM imaging. Finally, we discuss the basics of extending this approach to a variety of diffraction pattern designs.
Transcriptome Analysis of Three Sheep Intestinal Regions reveals Key Pathways and Hub Regulatory Genes of Large Intestinal Lipid Metabolism
Authors: Chao Tianle , Wang Guizhi , Ji Zhibin , Liu Zhaohua , Hou Lei , Wang Jin , Wang Jianmin 
Published: July 2017

AbstractThe large intestine, also known as the hindgut, is an important part of the animal digestive system. Recent studies on digestive system development in ruminants have focused on the rumen and the small intestine, but the molecular mechanisms underlying sheep large intestine metabolism remain poorly understood. To identify genes related to intestinal metabolism and to reveal molecular regulation mechanisms, we sequenced and compared the transcriptomes of mucosal epithelial tissues among the cecum, proximal colon and duodenum. A total of 4,221 transcripts from 3,254 genes were identified as differentially expressed transcripts. Between the large intestine and duodenum, differentially expressed transcripts were found to be significantly enriched in 6 metabolism-related pathways, among which PPAR signaling was identified as a key pathway. Three genes,CPT1A,LPLandPCK1, were identified as higher expression hub genes in the large intestine. Between the cecum and colon, differentially expressed transcripts were significantly enriched in 5 lipid metabolism related pathways, andCEPT1andMBOAT1were identified as hub genes. This study provides important information regarding the molecular mechanisms of intestinal metabolism in sheep and may provide a basis for further study.