bluuebunny/crossref_metadata_2025_split huggingface dataset:
Sensory TRP channels contribute differentially to skin inflammation and persistent itch
Authors: Feng Jing , Yang Pu , Mack Madison R. , Dryn Dariia , Luo Jialie , Gong Xuan , Liu Shenbin , Oetjen Landon K. , Zholos Alexander V. , Mei Zhinan , Yin Shijin , Kim Brian S. , Hu Hongzhen 
Published: October 2017

AbstractAlthough both persistent itch and inflammation are commonly associated with allergic contact dermatitis (ACD), it is not known if they are mediated by shared or distinct signaling pathways. Here we show that both TRPA1 and TRPV1 channels are required for generating spontaneous scratching in a mouse model of ACD induced by squaric acid dibutylester (SADBE), a small molecule hapten, through directly promoting the excitability of pruriceptors. TRPV1 but not TRPA1 channels protect the skin inflammation, as genetic ablation of TRPV1 function or pharmacological ablation of TRPV1-positive sensory nerves promotes cutaneous inflammation in the SADBE-induced ACD. Our results demonstrate that persistent itch and inflammation are mediated by distinct cellular and molecular mechanisms in a mouse model of ACD. Identification of distinct roles of TRPA1 and TRPV1 in regulating itch and inflammation may provide new insights into the pathophysiology and treatment of chronic itch and inflammation in ACD patients.
Three-dimensional context rather than NLS amino acid sequence determines importin α subtype specificity for RCC1
Authors: Sankhala Rajeshwer S. , Lokareddy Ravi K. , Begum Salma , Pumroy Ruth A. , Gillilan Richard E. , Cingolani Gino 
Published: October 2017

AbstractActive nuclear import of Ran exchange factor RCC1 is mediated by importin α3. This pathway is essential to generate a gradient of RanGTP on chromatin that directs nucleocytoplasmic transport, mitotic spindle assembly and nuclear envelope formation. Here we identify the mechanisms of importin α3 selectivity for RCC1. We find this isoform binds RCC1 with one order of magnitude higher affinity than the generic importin α1, although the two isoforms share an identical NLS-binding groove. Importin α3 uses its greater conformational flexibility to wedge the RCC1 β-propeller flanking the NLS against its lateral surface, preventing steric clashes with its Armadillo-core. Removing the β-propeller, or inserting a linker between NLS and β-propeller, disrupts specificity for importin α3, demonstrating the structural context rather than NLS sequence determines selectivity for isoform 3. We propose importin α3 evolved to recognize topologically complex NLSs that lie next to bulky domains or are masked by quaternary structures.
Anomalous quantization trajectory and parity anomaly in Co cluster decorated BiSbTeSe2 nanodevices
Authors: Zhang Shuai , Pi Li , Wang Rui , Yu Geliang , Pan Xing-Chen , Wei Zhongxia , Zhang Jinglei , Xi Chuanying , Bai Zhanbin , Fei Fucong , Wang Mingyu , Liao Jian , Li Yongqing , Wang Xuefeng , Song Fengqi , Zhang Yuheng , Wang Baigeng , Xing Dingyu , Wang Guanghou 
Published: October 2017

AbstractDirac Fermions with different helicities exist on the top and bottom surfaces of topological insulators, offering a rare opportunity to break the degeneracy protected by the no-go theorem. Through the application of Co clusters, quantum Hall plateaus were modulated for the topological insulator BiSbTeSe2, allowing an optimized surface transport. Here, using renormalization group flow diagrams, we show the extraction of two sets of converging points in the conductivity tensor space, revealing that the top surface exhibits an anomalous quantization trajectory, while the bottom surface retains the 1/2 quantization. Co clusters are believed to induce a sizeable Zeeman gap ( > 4.8 meV) through antiferromagnetic exchange coupling, which delays the Landau level hybridization on the top surface for a moderate magnetic field. A quasi-half-integer plateau also appears at −7.2 Tesla. This allows us to study the interesting physics of parity anomaly, and paves the way for further studies simulating exotic particles in condensed matter physics.
Cis P-tau is induced in clinical and preclinical brain injury and contributes to post-injury sequelae
Authors: Albayram Onder , Kondo Asami , Mannix Rebekah , Smith Colin , Tsai Cheng-Yu , Li Chenyu , Herbert Megan K. , Qiu Jianhua , Monuteaux Michael , Driver Jane , Yan Sandra , Gormley William , Puccio Ava M. , Okonkwo David O. , Lucke-Wold Brandon , Bailes Julian , Meehan William , Zeidel Mark , Lu Kun Ping , Zhou Xiao Zhen 
Published: October 2017

AbstractTraumatic brain injury (TBI) is characterized by acute neurological dysfunction and associated with the development of chronic traumatic encephalopathy (CTE) and Alzheimer’s disease. We previously showed that cis phosphorylated tau (cis P-tau), but not the trans form, contributes to tau pathology and functional impairment in an animal model of severe TBI. Here we found that in human samples obtained post TBI due to a variety of causes, cis P-tau is induced in cortical axons and cerebrospinal fluid and positively correlates with axonal injury and clinical outcome. Using mouse models of severe or repetitive TBI, we showed that cis P-tau elimination with a specific neutralizing antibody administered immediately or at delayed time points after injury, attenuates the development of neuropathology and brain dysfunction during acute and chronic phases including CTE-like pathology and dysfunction after repetitive TBI. Thus, cis P-tau contributes to short-term and long-term sequelae after TBI, but is effectively neutralized by cis antibody treatment.
Mechanocaloric effects in superionic thin films from atomistic simulations
Authors: Sagotra Arun K. , Errandonea Daniel , Cazorla Claudio 
Published: October 2017

AbstractSolid-state cooling is an energy-efficient and scalable refrigeration technology that exploits the adiabatic variation of a crystalline order parameter under an external field (electric, magnetic, or mechanic). The mechanocaloric effect bears one of the greatest cooling potentials in terms of energy efficiency owing to its large available latent heat. Here we show that giant mechanocaloric effects occur in thin films of well-known families of fast-ion conductors, namely Li-rich (Li3OCl) and type-I (AgI), an abundant class of materials that routinely are employed in electrochemistry cells. Our simulations reveal that at room temperature AgI undergoes an adiabatic temperature shift of 38 K under a biaxial stress of 1 GPa. Likewise, Li3OCl displays a cooling capacity of 9 K under similar mechanical conditions although at a considerably higher temperature. We also show that ionic vacancies have a detrimental effect on the cooling performance of superionic thin films. Our findings should motivate experimental mechanocaloric searches in a wide variety of already known superionic materials.
Remote light-controlled intracellular target recognition by photochromic fluorescent glycoprobes
Authors: Zhang Junji , Fu Youxin , Han Hai-Hao , Zang Yi , Li Jia , He Xiao-Peng , Feringa Ben L. , Tian He 
Published: October 2017

AbstractDevelopment of powerful fluorescence imaging probes and techniques sets the basis for the spatiotemporal tracking of cells at different physiological and pathological stages. While current imaging approaches rely on passive probe–analyte interactions, here we develop photochromic fluorescent glycoprobes capable of remote light-controlled intracellular target recognition. Conjugation between a fluorophore and spiropyran produces the photochromic probe, which is subsequently equipped with a glycoligand “antenna” to actively localize a target cell expressing a selective receptor. We demonstrate that the amphiphilic glycoprobes that form micelles in water can selectively enter the target cell to operate photochromic cycling as controlled by alternate UV/Vis irradiations. We further show that remote light conversion of the photochromic probe from one isomeric state to the other activates its reactivity toward a target intracellular analyte, producing locked fluorescence that is no longer photoisomerizable. We envision that this research may spur the use of photochromism for the development of bioimaging probes.
Mechanoresponsive lipid-protein nanoglobules facilitate reversible fibre formation in velvet worm slime
Authors: Baer Alexander , Schmidt Stephan , Haensch Sebastian , Eder Michaela , Mayer Georg , Harrington Matthew J. 
Published: October 2017

AbstractVelvet worms eject a fluid capture slime that can be mechanically drawn into stiff biopolymeric fibres. Remarkably, these fibres can be dissolved by extended exposure to water, and new regenerated fibres can be drawn from the dissolved fibre solution—indicating a fully recyclable process. Here, we perform a multiscale structural and compositional investigation of this reversible fabrication process with the velvet worm Euperipatoides rowelli, revealing that biopolymeric fibre assembly is facilitated via mono-disperse lipid-protein nanoglobules. Shear forces cause nanoglobules to self-assemble into nano- and microfibrils, which can be drawn into macroscopic fibres with a protein-enriched core and lipid-rich coating. Fibre dissolution in water leads to re-formation of nanoglobules, suggesting that this dynamic supramolecular assembly of mechanoresponsive protein-building blocks is mediated by reversible non-covalent interactions. These findings offer important mechanistic insights into the role of mechanochemical processes in bio-fibre formation, providing potential avenues for sustainable material fabrication processes.
AUNIP/C1orf135 directs DNA double-strand breaks towards the homologous recombination repair pathway
Authors: Lou Jiangman , Chen Hongxia , Han Jinhua , He Hanqing , Huen Michael S. Y. , Feng Xin-hua , Liu Ting , Huang Jun 
Published: October 2017

AbstractDNA double-strand breaks (DSBs) are mainly repaired by either homologous recombination (HR) or non-homologous end-joining (NHEJ). Here, we identify AUNIP/C1orf135, a largely uncharacterized protein, as a key determinant of DSB repair pathway choice. AUNIP physically interacts with CtIP and is required for efficient CtIP accumulation at DSBs. AUNIP possesses intrinsic DNA-binding ability with a strong preference for DNA substrates that mimic structures generated at stalled replication forks. This ability to bind DNA is necessary for the recruitment of AUNIP and its binding partner CtIP to DSBs, which in turn drives CtIP-dependent DNA-end resection and HR repair. Accordingly, loss of AUNIP or ablation of its ability to bind to DNA results in cell hypersensitivity toward a variety of DSB-inducing agents, particularly those that induce replication-associated DSBs. Our findings provide new insights into the molecular mechanism by which DSBs are recognized and channeled to the HR repair pathway.
Topological quantum phase transition from mirror to time reversal symmetry protected topological insulator
Authors: Mandal Partha S. , Springholz Gunther , Volobuev Valentine V. , Caha Ondrej , Varykhalov Andrei , Golias Evangelos , Bauer Günther , Rader Oliver , Sánchez-Barriga Jaime 
Published: October 2017

AbstractTopological insulators constitute a new phase of matter protected by symmetries. Time-reversal symmetry protects strong topological insulators of the Z2 class, which possess an odd number of metallic surface states with dispersion of a Dirac cone. Topological crystalline insulators are merely protected by individual crystal symmetries and exist for an even number of Dirac cones. Here, we demonstrate that Bi-doping of Pb1−x
Sn
x
Se (111) epilayers induces a quantum phase transition from a topological crystalline insulator to a Z2 topological insulator. This occurs because Bi-doping lifts the fourfold valley degeneracy and induces a gap at $$\bar \Gamma $$

Γ

̄

, while the three Dirac cones at the $${\bar{\rm M}}$$

M

̄

points of the surface Brillouin zone remain intact. We interpret this new phase transition as caused by a lattice distortion. Our findings extend the topological phase diagram enormously and make strong topological insulators switchable by distortions or electric fields.
Molecular analysis of high-grade serous ovarian carcinoma with and without associated serous tubal intra-epithelial carcinoma
Authors: Ducie Jennifer , Dao Fanny , Considine Michael , Olvera Narciso , Shaw Patricia A. , Kurman Robert J. , Shih Ie-Ming , Soslow Robert A. , Cope Leslie , Levine Douglas A. 
Published: October 2017

AbstractMany high-grade serous carcinomas (HGSCs) of the pelvis are thought to originate in the distal portion of the fallopian tube. Serous tubal intra-epithelial carcinoma (STIC) lesions are the putative precursor to HGSC and identifiable in ~ 50% of advanced stage cases. To better understand the molecular etiology of HGSCs, we report a multi-center integrated genomic analysis of advanced stage tumors with and without STIC lesions and normal tissues. The most significant focal DNA SCNAs were shared between cases with and without STIC lesions. The RNA sequence and the miRNA data did not identify any clear separation between cases with and without STIC lesions. HGSCs had molecular profiles more similar to normal fallopian tube epithelium than ovarian surface epithelium or peritoneum. The data suggest that the molecular features of HGSCs with and without associated STIC lesions are mostly shared, indicating a common biologic origin, likely to be the distal fallopian tube among all cases.
Investigating the relationship between Aerosol Optical Depth and Precipitation over Southeast Asia with Relative Humidity as an influencing factor
Authors: Ng Daniel Hui Loong , Li Ruimin , Raghavan Srivatsan V. , Liong Shie-Yui 
Published: October 2017

AbstractAtmospheric aerosols influence precipitation by changing the earth’s energy budget and cloud properties. A number of studies have reported correlations between aerosol properties and precipitation data. Despite previous research, it is still hard to quantify the overall effects that aerosols have on precipitation as multiple influencing factors such as relative humidity (RH) can distort the observed relationship between aerosols and precipitation. Thus, in this study, both satellite-retrieved and reanalysis data were used to investigate the relationship between aerosols and precipitation in the Southeast Asia region from 2001 to 2015, with RH considered as a possible influencing factor. Different analyses in the study indicate that a positive correlation was present between Aerosol Optical Depth (AOD) and precipitation over northern Southeast Asia region during the autumn and the winter seasons, while a negative correlation was identified over the Maritime Continent during the autumn season. Subsequently, a partial correlation analysis revealed that while RH influences the long-term negative correlations between AOD and precipitation, it did not significantly affect the positive correlations seen in the winter season. The result of this study provides additional evidence with respect to the critical role of RH as an influencing factor in AOD-precipitation relationship over Southeast Asia.
Distorting temporal fine structure by phase shifting and its effects on speech intelligibility and neural phase locking
Authors: Xu Yingyue , Chen Maxin , LaFaire Petrina , Tan Xiaodong , Richter Claus-Peter 
Published: October 2017

AbstractEnvelope (E) and temporal fine structure (TFS) are important features of acoustic signals and their corresponding perceptual function has been investigated with various listening tasks. To further understand the underlying neural processing of TFS, experiments in humans and animals were conducted to demonstrate the effects of modifying the TFS in natural speech sentences on both speech recognition and neural coding. The TFS of natural speech sentences was modified by distorting the phase and maintaining the magnitude. Speech intelligibility was then tested for normal-hearing listeners using the intact and reconstructed sentences presented in quiet and against background noise. Sentences with modified TFS were then used to evoke neural activity in auditory neurons of the inferior colliculus in guinea pigs. Our study demonstrated that speech intelligibility in humans relied on the periodic cues of speech TFS in both quiet and noisy listening conditions. Furthermore, recordings of neural activity from the guinea pig inferior colliculus have shown that individual auditory neurons exhibit phase locking patterns to the periodic cues of speech TFS that disappear when reconstructed sounds do not show periodic patterns anymore. Thus, the periodic cues of TFS are essential for speech intelligibility and are encoded in auditory neurons by phase locking.
Switching behavior of droplets crossing nodes on a fiber network
Authors: Weyer F. , Duchesne A. , Vandewalle N. 
Published: October 2017

AbstractLately, curious structures have been erected in arid regions: they are large nets able to catch water from fog. Tiny droplets condense on the mesh and are collected on the bottom of it. This innovative technology is crucial to obtain drinkable water in these inhospitable areas. Many studies aim to understand the behavior of droplets trapped on this entanglement of fibers. However, the motion of a droplet sliding on a network of inclined fibers and encountering several crossings when going down remains an open question. Here, we look at the path chosen by such a drop and, especially, we analyze its behavior at the different nodes of the array. We show that droplets may change from one fiber to another one depending on the slope and the diameter of these fibers. We prove that we can force a droplet to follow a specific path simply by carefully designing the fiber mesh. These findings are expected to provide a very convenient way to manipulate small droplets in applications from microfluidics to fog harvesting.
Fan-out Estimation in Spin-based Quantum Computer Scale-up
Authors: Nguyen Thien , Hill Charles D. , Hollenberg Lloyd C. L. , James Matthew R. 
Published: October 2017

AbstractSolid-state spin-based qubits offer good prospects for scaling based on their long coherence times and nexus to large-scale electronic scale-up technologies. However, high-threshold quantum error correction requires a two-dimensional qubit array operating in parallel, posing significant challenges in fabrication and control. While architectures incorporating distributed quantum control meet this challenge head-on, most designs rely on individual control and readout of all qubits with high gate densities. We analysed the fan-out routing overhead of a dedicated control line architecture, basing the analysis on a generalised solid-state spin qubit platform parameterised to encompass Coulomb confined (e.g. donor based spin qubits) or electrostatically confined (e.g. quantum dot based spin qubits) implementations. The spatial scalability under this model is estimated using standard electronic routing methods and present-day fabrication constraints. Based on reasonable assumptions for qubit control and readout we estimate 102–105 physical qubits, depending on the quantum interconnect implementation, can be integrated and fanned-out independently. Assuming relatively long control-free interconnects the scalability can be extended. Ultimately, the universal quantum computation may necessitate a much higher number of integrated qubits, indicating that higher dimensional electronics fabrication and/or multiplexed distributed control and readout schemes may be the preferredstrategy for large-scale implementation.
Compact-Morphology-based poly-metallic Nodule Delineation
Authors: Schoening Timm , Jones Daniel O. B. , Greinert Jens 
Published: October 2017

AbstractPoly-metallic nodules are a marine resource considered for deep sea mining. Assessing nodule abundance is of interest for mining companies and to monitor potential environmental impact. Optical seafloor imaging allows quantifying poly-metallic nodule abundance at spatial scales from centimetres to square kilometres. Towed cameras and diving robots acquire high-resolution imagery that allow detecting individual nodules and measure their sizes. Spatial abundance statistics can be computed from these size measurements, providing e.g. seafloor coverage in percent and the nodule size distribution. Detecting nodules requires segmentation of nodule pixels from pixels showing sediment background. Semi-supervised pattern recognition has been proposed to automate this task. Existing nodule segmentation algorithms employ machine learning that trains a classifier to segment the nodules in a high-dimensional feature space. Here, a rapid nodule segmentation algorithm is presented. It omits computation-intense feature-based classification and employs image processing only. It exploits a nodule compactness heuristic to delineate individual nodules. Complex machine learning methods are avoided to keep the algorithm simple and fast. The algorithm has successfully been applied to different image datasets. These data sets were acquired by different cameras, camera platforms and in varying illumination conditions. Their successful analysis shows the broad applicability of the proposed method.
Reduced nitric oxide levels during drought stress promote drought tolerance in barley and is associated with elevated polyamine biosynthesis
Authors: Montilla-Bascón Gracia , Rubiales Diego , Hebelstrup Kim H. , Mandon Julien , Harren Frans J. M. , Cristescu Simona M. , Mur Luis A. J. , Prats Elena 
Published: October 2017

AbstractNitric oxide (NO) is a key messenger in plant stress responses but its exact role in drought response remains unclear. To investigate the role of NO in drought response we employed transgenic barley plants (UHb) overexpressing the barley non-symbiotic hemoglobin gene HvHb1 that oxidizes NO to NO3−. Reduced NO production under drought conditions in UHb plants was associated with increased drought tolerance. Since NO biosynthesis has been related to polyamine metabolism, we investigated whether the observed drought-related NO changes could involve polyamine pathway. UHb plants showed increases in total polyamines and in particular polyamines such as spermidine. These increases correlated with the accumulation of the amino acid precursors of polyamines and with the expression of specific polyamine biosynthesis genes. This suggests a potential interplay between NO and polyamine biosynthesis during drought response. Since ethylene has been linked to NO signaling and it is also related to polyamine metabolism, we explored this connection. In vivo ethylene measurement showed that UHb plants significantly decrease ethylene production and expression of aminocyclopropane-1-carboxylic acid synthase gene, the first committed step in ethylene biosynthesis compared with wild type. These data suggest a NO-ethylene influenced regulatory node in polyamine biosynthesis linked to drought tolerance/susceptibility in barley.