bluuebunny/crossref_metadata_2025_split huggingface dataset:
On the effects of multimodal information integration in multitasking
Authors: Stock Ann-Kathrin , Gohil Krutika , Huster René J. , Beste Christian 
Published: July 2017

AbstractThere have recently been considerable advances in our understanding of the neuronal mechanisms underlying multitasking, but the role of multimodal integration for this faculty has remained rather unclear. We examined this issue by comparing different modality combinations in a multitasking (stop-change) paradigm. In-depth neurophysiological analyses of event-related potentials (ERPs) were conducted to complement the obtained behavioral data. Specifically, we applied signal decomposition using second order blind identification (SOBI) to the multi-subject ERP data and source localization. We found that both general multimodal information integration and modality-specific aspects (potentially related to task difficulty) modulate behavioral performance and associated neurophysiological correlates. Simultaneous multimodal input generally increased early attentional processing of visual stimuli (i.e. P1 and N1 amplitudes) as well as measures of cognitive effort and conflict (i.e. central P3 amplitudes). Yet, tactile-visual input caused larger impairments in multitasking than audio-visual input. General aspects of multimodal information integration modulated the activity in the premotor cortex (BA 6) as well as different visual association areas concerned with the integration of visual information with input from other modalities (BA 19, BA 21, BA 37). On top of this, differences in the specific combination of modalities also affected performance and measures of conflict/effort originating in prefrontal regions (BA 6).
Operating Nanobeams in a Quantum Fluid
Authors: Bradley D. I. , George R. , Guénault A. M. , Haley R. P. , Kafanov S. , Noble M. T. , Pashkin Yu. A. , Pickett G. R. , Poole M. , Prance J. R. , Sarsby M. , Schanen R. , Tsepelin V. , Wilcox T. , Zmeev D. E. 
Published: July 2017

AbstractMicroelectromechanical (MEMS) and nanoelectromechanical systems (NEMS) are ideal candidates for exploring quantum fluids, since they can be manufactured reproducibly, cover the frequency range from hundreds of kilohertz up to gigahertz and usually have very low power dissipation. Their small size offers the possibility of probing the superfluid on scales comparable to, and below, the coherence length. That said, there have been hitherto no successful measurements of NEMS resonators in the liquid phases of helium. Here we report the operation of doubly-clamped aluminium nanobeams in superfluid 4He at temperatures spanning the superfluid transition. The devices are shown to be very sensitive detectors of the superfluid density and the normal fluid damping. However, a further and very important outcome of this work is the knowledge that now we have demonstrated that these devices can be successfully operated in superfluid 4He, it is straightforward to apply them in superfluid 3He which can be routinely cooled to below 100 μK. This brings us into the regime where nanomechanical devices operating at a few MHz frequencies may enter their mechanical quantum ground state.
Seed Pelleting with Calcium Peroxide Improves Crop Establishment of Direct-seeded Rice under Waterlogging Conditions
Authors: Mei Junhao , Wang Weiqin , Peng Shaobing , Nie Lixiao 
Published: July 2017

AbstractPoor crop establishment of direct-seeded rice (DSR) is one of the major constraints to wide adoption of DSR, particularly in areas prone to flooding after sowing or where fields are not level. Seed pelleting is an effective, practical and facile technique to enhance crop establishment under unfavorable environmental conditions. To evaluate the effects of seed pelleting on rice germination, seedling growth and associated metabolic events under waterlogging stress, various seed pelleting treatments including formulae, pelleting times (the weight ratio of pelleting agents: rice seeds = 1:1~7:1 (w/w) and CaO2contents were tested in series of experiments. Naked seeds were maintained for comparison as a control. Pelleting treatments with CaO2significantly increased seed germination and seedling growth of DSR under waterlogging conditions compared with pelleted seeds without CaO2and naked seeds. The optimum weight ratios of CaO2to dry seeds were found to be in the range of 0.6:1–1:1 based on seed germination and seedling growth performance under waterlogging conditions. Under waterlogging conditions, high seed germination percentage and vigorous seedling growth of DSR due to seed pelleting with CaO2was associated with an increase in α-amylase activity, but decrease in alcohol dehydrogenase (ADH) and pyruvate decarboxylase (PDC) activities in pelleted seeds.
Fluvoxamine stimulates oligodendrogenesis of cultured neural stem cells and attenuates inflammation and demyelination in an animal model of multiple sclerosis
Authors: Ghareghani Majid , Zibara Kazem , Sadeghi Heibatollah , Dokoohaki Shima , Sadeghi Hossein , Aryanpour Roya , Ghanbari Amir 
Published: July 2017

AbstractMultiple Sclerosis (MS) require medications controlling severity of the pathology and depression, affecting more than half of the patients. In this study, the effect of antidepressant drug fluvoxamine, a selective serotonin reuptake inhibitor, was investigatedin vitroandin vivo. Nanomolar concentrations of fluvoxamine significantly increased cell viability and proliferation of neural stem cells (NSCs) through increasing mRNA expression of Notch1, Hes1 and Ki-67, and protein levels of NICD. Also, physiological concentrations of fluvoxamine were optimal for NSC differentiation toward oligodendrocytes, astrocytes and neurons. In addition, fluvoxamine attenuated experimental autoimmune encephalomyelitis (EAE) severity, a rat MS model, by significantly decreasing its clinical scores. Moreover, fluvoxamine treated EAE rats showed a decrease in IFN-γ serum levels and an increase in IL-4, pro- and anti-inflammatory cytokines respectively, compared to untreated EAE rats. Furthermore, immune cell infiltration and demyelination plaque significantly decreased in spinal cords of fluvoxamine-treated rats, which was accompanied by an increase in protein expression of MBP and GFAP positive cells and a decrease in lactate serum levels, a new biomarker of MS progression. In summary, besides its antidepressant activity, fluvoxamine stimulates proliferation and differentiation of NSCs particularly toward oligodendrocytes, a producer of CNS myelin.
Hypofractionated stereotactic radiation therapy activates the peripheral immune response in operable stage I non-small-cell lung cancer
Authors: Zhang Ting , Yu Haifeng , Ni Chao , Zhang Tao , Liu Luying , Lv Qinghua , Zhang Zhigang , Wang Zhen , Wu Dang , Wu Pin , Chen Guodi , Wang Liancong , Wei Qichun , Huang Jian , Wang Xiaojian 
Published: July 2017

AbstractIt has been reported that in patients with operable stage I non-small cell lung cancer (NSCLC), overall survival (OS) is better in those who undergo hypofractionated stereotactic radiation therapy (HSRT) than in those who undergo surgery. However, the reason that HSRT has a better OS has not been fully explored. Here, we analyzed reconstitution kinetics in immune cells in the peripheral blood of NSCLC patients after HSRT. We found that HSRT increased the frequency of total T cells, especially the proportion of CD8+ T cells, but decreased the frequency of inhibitory Tregs. Intracellular staining showed that after HSRT, peripheral CD8+ T cells were transformed into activated T cells, which express high levels of TNF-α, IFN-γ, granzyme B and IL-2. HSRT also increased the production of IL-2, TNF-α, and IFN-γ but down-regulated the production of TGF-β in CD4+ T cells. The frequencies of naïve B cells and double-negative B cells were lower, while the proportions of MZ-like B cells, transitional B cells and plasmablast cells were higher after HSRT. Collectively, our results demonstrate that HSRT activates the peripheral immune response and indicate the dynamic variation in peripheral lymphocytes after HSRT, which is very important for optimizing combination treatments in clinical practice.
Efficient activation of the lymphangiogenic growth factor VEGF-C requires the C-terminal domain of VEGF-C and the N-terminal domain of CCBE1
Authors: Jha Sawan Kumar , Rauniyar Khushbu , Karpanen Terhi , Leppänen Veli-Matti , Brouillard Pascal , Vikkula Miikka , Alitalo Kari , Jeltsch Michael 
Published: July 2017

AbstractThe collagen- and calcium-binding EGF domains 1 (CCBE1) protein is necessary for lymphangiogenesis. Its C-terminal collagen-like domain was shown to be required for the activation of the major lymphangiogenic growth factor VEGF-C (Vascular Endothelial Growth Factor-C) along with the ADAMTS3 (A Disintegrin And Metalloproteinase with Thrombospondin Motifs-3) protease. However, it remained unclear how the N-terminal domain of CCBE1 contributed to lymphangiogenic signaling. Here, we show that efficient activation of VEGF-C requires its C-terminal domain both in vitro and in a transgenic mouse model. The N-terminal EGF-like domain of CCBE1 increased VEGFR-3 signaling by colocalizing pro-VEGF-C with its activating protease to the lymphatic endothelial cell surface. When the ADAMTS3 amounts were limited, proteolytic activation of pro-VEGF-C was supported by the N-terminal domain of CCBE1, but not by its C-terminal domain. A single amino acid substitution in ADAMTS3, identified from a lymphedema patient, was associated with abnormal CCBE1 localization. These results show that CCBE1 promotes VEGFR-3 signaling and lymphangiogenesis by different mechanisms, which are mediated independently by the two domains of CCBE1: by enhancing the cleavage activity of ADAMTS3 and by facilitating the colocalization of VEGF-C and ADAMTS3. These new insights should be valuable in developing new strategies to therapeutically target VEGF-C/VEGFR-3-induced lymphangiogenesis.
Identification of stacking faults in silicon carbide by polarization-resolved second harmonic generation microscopy
Authors: Hristu Radu , Stanciu Stefan G. , Tranca Denis E. , Polychroniadis Efstathios K. , Stanciu George A. 
Published: July 2017

AbstractAlthough silicon carbide is a highly promising crystalline material for a wide range of electronic devices, extended and point defects which perturb the lattice periodicity hold deep implications with respect to device reliability. There is thus a great need for developing new methods that can detect silicon carbide defects which are detrimental to device functionality. Our experiment demonstrates that polarization-resolved second harmonic generation microscopy can extend the efficiency of the “optical signature” concept as an all-optical rapid and non-destructive set of investigation methods for the differentiation between hexagonal and cubic stacking faults in silicon carbide. This technique can be used for fast and in situ characterization and optimization of growth conditions for epilayers of silicon carbide and similar materials.
Lamin B1 levels modulate differentiation into neurons during embryonic corticogenesis
Authors: Mahajani Sameehan , Giacomini Caterina , Marinaro Federica , De Pietri Tonelli Davide , Contestabile Andrea , Gasparini Laura 
Published: July 2017

AbstractLamin B1, a key component of the nuclear lamina, plays an important role in brain development. Ablation of endogenous Lamin B1 (Lmnb1) in the mouse strongly impairs embryonic brain development and corticogenesis. However, the mechanisms underlying these neurodevelopmental effects are unknown. Here, we report that Lamin B1 levels modulate the differentiation of murine neural stem cells (NSCs) into neurons and astroglial-like cells. In vitro, endogenous Lmnb1 depletion favors NSC differentiation into glial fibrillar acidic protein (GFAP)-immunoreactive cells over neurons, while overexpression of human Lamin B1 (LMNB1) increases the proportion of neurons. In Lmnb1-null embryos, neurogenesis is reduced, while in vivo Lmnb1 silencing in mouse embryonic brain by in utero electroporation of a specific Lmnb1 sh-RNA results in aberrant cortical positioning of neurons and increased expression of the astrocytic marker GFAP in the cortex of 7-day old pups. Together, these results indicate that finely tuned levels of Lamin B1 are required for NSC differentiation into neurons, proper expression of the astrocytic marker GFAP and corticogenesis.
Association between BRAF V600E Mutation and Ultrasound Features in Papillary Thyroid Carcinoma Patients with and without Hashimoto’s Thyroiditis
Authors: Zhang Qin , Liu Bo-Ji , Ren Wei-Wei , He Ya-Ping , Li Xiao-Long , Zhao Chong-Ke , Zhang Yi-Feng , Yue Wen-Wen , Zheng Jia-Yi , Xu Hui-Xiong 
Published: July 2017

AbstractTo assess the association between BRAF V600E mutation and ultrasound (US) features in papillary thyroid carcinoma (PTC) patients with and without Hashimoto’s thyroiditis (HT). We retrospectively reviewed the US features and status of BRAF V600E mutation in 438 consecutive patients with surgically confirmed PTCs. The association between BRAF mutation and US features were analyzed. In addition, we conducted subgroup analyses in terms of coexistent HT. The BRAF mutation was found in 86.5% of patients (379 of 438). Patient age (OR: 1.028, P = 0.010), age ≥ 50 y (OR: 1.904, P = 0.030), and microcalcification (OR: 2.262, P = 0.015) on US were significantly associated with BRAF mutation in PTC patients. Solid component (OR: 5.739, P = 0.019) on US was the significant predictor for BRAF mutation in patients with HT, while age (OR: 1.036, P = 0.017) and microcalcification (OR: 3.093, P = 0.017) were significantly associated with BRAF mutation in patients without HT. In conclusion, older age and microcalcification are risk factors for BRAF mutation in PTC patients, especially in those without HT. For those with HT, however, PTCs with BRAF mutation tend to be solid on ultrasound. These factors might be considered when making treatment planning or prognosis evaluation.
Prominent metallic surface conduction and the singular magnetic response of topological Dirac fermion in three-dimensional topological insulator Bi1.5Sb0.5Te1.7Se1.3
Authors: Dutta Prithwish , Pariari Arnab , Mandal Prabhat 
Published: July 2017

AbstractWe report semiconductor to metal-like crossover in the temperature dependence of resistivity (ρ) due to the switching of charge transport from bulk to surface channel in three-dimensional topological insulator Bi1.5Sb0.5Te1.7Se1.3. Unlike earlier studies, a much sharper drop in ρ(T) is observed below the crossover temperature due to the dominant surface conduction. Remarkably, the resistivity of the conducting surface channel follows a rarely observable T2 dependence at low temperature, as predicted theoretically for a two-dimensional Fermi liquid system. The field dependence of magnetization shows a cusp-like paramagnetic peak in the susceptibility (χ) at zero field over the diamagnetic background. The peak is found to be robust against temperature and χ decays linearly with the field from its zero-field value. This unique behavior of the χ is associated with the spin-momentum locked topological surface state in Bi1.5Sb0.5Te1.7Se1.3. The reconstruction of the surface state with time is clearly reflected through the reduction of the peak height with the age of the sample.
The Power of mind: Blocking visual perception by hypnosis
Authors: Schmidt B. , Hecht H. , Naumann E. , Miltner W. H. R. 
Published: July 2017

AbstractThe present study investigated the effects of suggestion on the processing of visual stimuli. Participants counted rare visual stimuli presented on a screen, once during a hypnosis condition where they were suggested that their vision of the screen is blocked by a virtual wooden board in front of their eyes and once during a control condition without suggestion. In the hypnosis condition, counting performance was about 20% worse than in the control condition. At the same time, the P3b amplitude of the event-related brain potential was about 37% reduced. Smaller P3b amplitudes were significantly associated with deficient counting performance, and this effect was largest in participants who reported the blockade as real. In contrast, earlier brain responses (N1, P2) that reflect basic processing of the visual stimuli were not affected by the suggested blockade. We conclude that the suggestion of the blockade affects later stages of visual perception, leaving early processes intact. This illustrates the impact of suggestions and the power of mind.
Development of Novel Mouse Model of Ulcers Induced by Implantation of Magnets
Authors: Takeuchi Yuriko , Ueno Koji , Mizoguchi Takahiro , Samura Makoto , Harada Takasuke , Oga Atsunori , Murata Tomoaki , Hosoyama Tohru , Morikage Noriyasu , Hamano Kimikazu 
Published: July 2017

AbstractWe developed a novel mouse model of human refractory cutaneous ulcers that more faithfully reflects pathology and evaluated the effects of mixed cell sheets comprising peripheral blood mononuclear cells and fibroblasts, which we previously developed for treating refractory cutaneous ulcers. Model development involved sandwiching the skin between two magnets, one of which was implanted under the skin for 7 consecutive days. This magnet-implanted ulcer model produced persistently large amounts of exudate and induced the infiltration of the ulcer with inflammatory cells. The model mice had a thicker epidermis and impaired transforming growth factor-β (TGF-β) signaling followed by SMAD2 down-regulation, which causes epidermal hyperplasia in chronic ulcers. Impaired TGF-β signaling also occurred in the ulcers of critical limb ischemia patients. Mixed cell implantation in this ulcer model reduced TNF-α and IL-6 levels in the tissues surrounding the mixed cell sheet-treated ulcers compared with controls or mice treated with trafermin (FGF2). Seven days after commencing therapy, the epidermis was thinner in mice treated with the mixed cell sheets than in controls. This model may therefore serve as a clinically relevant model of human ulcers, and our mixed cell sheets may effectively relieve chronic inflammation and inhibit refractoriness mechanisms.
Spectral clustering using Nyström approximation for the accurate identification of cancer molecular subtypes
Authors: Shi Mingguang , Xu Guofu 
Published: July 2017

AbstractA major challenge in clinical cancer research is the identification of accurate molecular subtype. While unsupervised clustering methods have been applied for class discovery, this clustering method remains a bottleneck in developing accurate method for molecular subtype discovery. In this analysis, we hypothesize that spectral clustering method could identify molecular subtypes in correlation with survival outcomes. We propose an accurate subtype identification method, Cancer Subtype Identification with Spectral Clustering using Nyström approximation (CSISCN), for the discovery of molecular subtypes, based on spectral clustering method. CSISCN could be used to improve gene expression-based identification of breast cancer molecular subtypes. We demonstrated that CSISCN identified the molecular subtypes with distinct clinical outcomes and was valid for the number of molecular subtypes. Furthermore, CSISCN identified molecular subtypes for improving clinical and molecular relevance which significantly outperformed consensus clustering and spectral clustering methods. To test the general applicability of the CSISCN, we further applied it on human CRC datasets and AML datasets and demonstrated superior performance as compared to consensus clustering method. In summary, CSISCN demonstrated the great potential in gene expression-based subtype identification.
A tyrosine aminotransferase involved in rosmarinic acid biosynthesis in Prunella vulgaris L
Authors: Ru Mei , Wang Kunru , Bai Zhenqing , Peng Liang , He Shaoxuan , Wang Yong , Liang Zongsuo 
Published: July 2017

AbstractRosmarinic acid (RA) and its derivants are medicinal compounds that comprise the active components of several therapeutics. We isolated and characterised a tyrosine aminotransferase of Prunella vulgaris (PvTAT). Deduced PvTAT was markedly homologous to other known/putative plant TATs. Cytoplasmic localisation of PvTAT was observed in tobacco protoplasts. Recombinantly expressed and purified PvTAT had substrates preference for L-tyrosine and phenylpyruvate, with apparent Km of 0.40 and 0.48 mM, and favoured the conversion of tyrosine to 4-hydroxyphenylpyruvate. In vivo activity was confirmed by functional restoration of the Escherichia coli tyrosine auxotrophic mutant DL39. Agrobacterium rhizogenes-mediated antisense/sense expression of PvTAT in hairy roots was used to evaluate the contribution of PvTAT to RA synthesis. PvTAT were reduced by 46–95% and RA were decreased by 36–91% with low catalytic activity in antisense transgenic hairy root lines; furthermore, PvTAT were increased 0.77–2.6-fold with increased 1.3–1.8-fold RA and strong catalytic activity in sense transgenic hairy root lines compared with wild-type counterparts. The comprehensive physiological and catalytic evidence fills in the gap in RA-producing plants which didn’t provide evidence for TAT expression and catalytic activities in vitro and in vivo. That also highlights RA biosynthesis pathway in P. vulgaris and provides useful information to engineer natural products.
Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes
Authors: Wang Zupeng , Liu Yifei , Li Li , Li Dawei , Zhang Qiong , Guo Yangtao , Wang Shuaibin , Zhong Caihong , Huang Hongwen 
Published: July 2017

AbstractAn outbreak of kiwifruit bacterial canker disease caused by Pseudomonas syringae pv. actinidiae (Psa) beginning in 2008 caused disaster to the kiwifruit industry. However the mechanisms of interaction between kiwifruit and Psa are unknown. Long noncoding RNAs (lncRNAs) are known to regulate many biological processes, but comprehensive repertoires of kiwifruit lncRNAs and their effects on the interaction between kiwifruit and Psa are unknown. Here, based on in-depth transcriptomic analysis of four kiwifruit materials at three stages of infection with Psa, we identified 14,845 transcripts from 12,280 loci as putative lncRNAs. Hierarchical clustering analysis of differentially-expressed transcripts reveals that both protein-coding and lncRNA transcripts are expressed species-specifically. Comparing differentially-expressed transcripts from different species, variations in pattern-triggered immunity (PTI) were the main causes of species-specific responses to infection by Psa. Using weighted gene co-expression network analysis, we identified species-specific expressed key lncRNAs which were closely related to plant immune response and signal transduction. Our results illustrate that different kiwifruit species employ multiple different plant immunity layers to fight against Psa infection, which causes distinct responses. We also discovered that lncRNAs might affect kiwifruit responses to Psa infection, indicating that both protein-coding regions and noncoding regions can affect kiwifruit response to Psa infection.