bluuebunny/crossref_metadata_2025_split huggingface dataset:
EVALUATION OF FOUR INTEGRATED PEST MANAGEMENT PACKAGES FOR CONTROLLING MAIN PESTS OF COTTON IN RAINFED FIELDS
Authors: Nurindah Nurindah , Sunarto Dwi Adi 
Published: December 2016

Cotton production nationally is low due to various constraints, including pests. Two main pests commonly found in cotton plantation in rain fed fields are cotton leafhopper (Amrasca biguttula) and cotton bollworm (Helicoverpa armigera). The study aimed to evaluate four packages of integrated pest management (IPM) techniques to control cotton leafhopper and cotton bollworm in rain fed fields. The experiment was conducted in farmers’ fields at Asembagus, East Java, between January and July 2012. Four packages of IPM evaluated were cotton varieties, i.e. Kanesia 10 or Kanesia 13, and seed treatment with synthetic insecticide (imidacloprid) before sowing or spraying molasses (10 ml L-1 water) as food for natural enemies. The cotton plants were intercropped with groundnut and sprayed with neem seed extract (NSE) at the action threshold level for pest control. These packages were compared among themselves and also with the methods usually used by farmers, i.e. planting cotton variety Kanesia 8 intercropped with groundnut and pest control using synthetic chemical insecticides. Twenty five plants were sampled randomly per plot and measured for their growth, leafhopper and bollworm populations, as well as cotton seed yield per plot. Observations were made weekly, starting at 30 days after planting (DAP) until 120 DAP. The results showed that the use of Kanesia 10 or Kanesia 13 intercropped with groundnut and spraying molasses to conserve natural enemies was the best pest management practice and superior to farmers’ practices. Conserving natural enemies is not only profitable (saving production cost of IDR1,150,000 to IDR1,500,000 ha-1 season-1), but also safe for the environment (no need to spray chemical insecticides).
SPECIES AND FUNCTIONAL DIVERSITY OF RHIZOBACTERIA OF RICE PLANT IN THE COASTAL SOILS OF INDONESIA
Authors: Susilowati Dwi Ningsih , Sudiana I Made , Mubarik N.R. , Suwanto A. 
Published: December 2016

Rhizobacteria are important components of soil and directly or indirectly influence the soils quality and plant growth for maintaining adequate plant nutrition and reducing the negative environmental effects of fertilizers. Applying high dose of chemical fertilizers in most of rice fields in the coastal areas could reduce the quality of the soil in the long time. There are few studies addressed to verify the species and functional diversity of cultivable rhizobacteria associated with rice plant in the coastal soils. The objective of the study was to verify the species and functional diversity of rhizobacteria isolated from the coastal soils of two rice production areas of Subang and Indramayu, West Java. Special focus was given to verify phosphate solubilization, nitrogen fixation, IAA and cellulase production of the selected 78 strains of rice rhizobacteria isolated from the coastal paddy field, as well as taxonomical analyses based on 16S rRNA. The results showed that among 78 bacterial isolates from the coastal paddy field, mostly were belonging to the Firmicutes, most of them affiliated with genera Bacillus, 75 strains produced IAA, 32 strains fixed nitrogen, 37 strains solubilized phosphate and 33 strains produced cellulase. Several strains of the rhizobacteria were capable of producing plant growth promoting substances (PGPR), alone or in combination, such as IAA, fixing nitrogen, solubilizing phosphate, and producing cellulase. Taking all of these diverse PGPR characteristics into account, it is clear that the 78 identified isolates have great potential for improving saline soils of the coastal paddy fields in Indonesia.
CATCH DIFFERENCES OF BOTTOM LONG LINE USING FRESH AND SALTED FISH BAITS
Authors: Mahiswara Mahiswara , Wudianto Wudianto 
Published: December 2016

Bottom long line is an important gear for catching demersal fish and normally uses fresh fish as bait. Recent development indicates that the fishing grounds for bottom long line are further away from the coast and consequently bait with longer life-time may be needed. Research on the use of fresh and salted fish baits for bottom long line has been conducted in the eastern Bali waters. In this study, salted and fresh baits were used simultaneously for fishing. The results showed that the catch of bottom long line using fresh bait was significantly higher than that for salted bait indicating that other suitable preservation techniques are necessary.
CRYOPRESERVATION OF TRUE-SEED AND EMBRYO OF MAIZE AND SOYBEAN FOR LONG-TERM STORAGE
Authors: Sudarmonowati Enny , Fitryatmi I. , Sadjad S. 
Published: December 2016

<br />Study on cryopreservation of Indonesian local cultivars and improved varieties of maize and soybean has never been done. This method may be used for long-term preservation of seeds of maize and soybean. In this study, the method was applied to maize and soybean, Arjuna and Wilis respectively, as a model for preserving germplasm of ortodox seeds. Whole seeds and excised embryos of both varieties were subjected to two methods of cryopreservation, i.e., two-stage cooling and rapid freezing with or without 15% dimethyl sulfoxide (DMSO) as cryoprotectant solution prior to immersion in liquid nitrogen (-196oC). Results indicated that there was no significant difference between the use of DMSO for both species in terms of viability, although pretreatment in DMSO was slightly reduced the percentage of viability of both species. Slow freezing to -30oC prior to immersion in the liquid nitrogen could give as high as 76.67% and 51.67% surviving whole seeds of maize and soybean, respectively. Preserving excised embryos of maize in the liquid nitrogen using either slow or rapid freezing significantly reduced the percentage of viability from 20-76.67% to 5-18.33% (four folds) depending on treatments applied. Results also showed that one day or 15 minutes of immersion of samples in the liquid nitrogen gave rise to similar values of viability of maize and soybean, i.e., 20-60% and 20-51.67%, respectively depending on treatments applied. These results implied that for long-term storage of maize and soybean seeds as they could survive at the rate of 76.67% and 51.67% respectively, the seed can be treated by prefreezing to -30oC<br />without the presence of DMSO prior to immersion in liquid nitrogen.<br /><br />
SOIL PROPERTIES OF THE EASTERN TOPOSEQUENCE OF MOUNT KELIMUTU, FLORES ISLAND, EAST NUSA TENGGARA AND THEIR POTENTIAL FOR AGRICULTURAL USE
Authors: Hikmatullah Hikmatullah , Subagyo H. , Prasetyo B.H. 
Published: December 2016

Kelimutu stratovolcano is one of the young volcanoes extensively found in Flores island. Studies on volcanic soil properties and their suitability for agricultural development in the whole island are lacking. The research was conducted to evaluate the relationship of elevation and soil properties, and suitability for agricultural development. Five representative pedons at elevation of 550, 1,000, 1,200, 1,400, and 1,600 m above sea level (asl), respectively, were studied in the field, and 22 soil samples were analyzed in the laboratory. The results indicated that elevation significantly affected soil properties and degree of soil weathering. With decreasing elevation, sand content, amorphous material content, and phosphate retention decreased. Concomitantly, clay content, H2O-pH, exchangeable Ca and Mg, base saturation, and soil-CEC increased. A highly positive correlation was shown between P retention and NaFpH, Al, and (Al+0.5 Fe) contents extracted by acid ammonium oxalate. Soil-CEC also showed significant positive correlation with clay and silt contents, organic carbon, and exchangeable Ca and Mg. Degree of weathering increased with decreasing elevation as reflected by decreasing silt/clay ratio. Soils developed from Entisols (Lithic Udorthents) at 1,600 m asl, to Andisols (Typic Hapludands) at 1,000-1,400 m asl, and Mollisols (Typic Hapludolls) at lower elevation down to 550 m asl. Soils at 1,400-1,600 m asl are unsuitable for agriculture. Soils at 1,000-1,200 m are moderately suitable for food crops, horticulture, and estate crops. Dominant limiting factors are steep slopes and P retention. Soils at 550 m asl are suitable for food and estate crops, and also lowland horticulture.
DETERMINATION OF FOLATE RETENTION DURING TOFU PREPARATION USING TRIENZYME TREATMENT AND MICROBIOLOGICAL ASSAY
Authors: Ginting Erliana , Arcot Jayashree , Chox Julian M. 
Published: December 2016

Megaloblastic anaemia, neural tube defects, coronary heart disease, and some forms of cancer have been linked to an inadequate dietary intake of folate. Legumes are good sources of folate, however, processing may affect folate availability in legume foods. This study investigated the folate content and retention during the preparation of tofu through the trienzyme treatment (protease, α-amylase, and human plasma) and microbiological assay using Lactobacillus casei. The results showed that the total folate content was considerably reduced during tofu preparation, from 273.4 µg 100 g-1 dwb in soybean seed to 108.4 µg 100 g-1 dwb in tofu, yielding a folate retention of 40%. Folate losses were mainly due to leaching into the water during soaking and pressing as well as heat destruction during milling and boiling. High folate loss (51%) was particularly found in the whey. A shorter soaking time (8 hours), optimum extraction, and pressing methods were suggested with respect to minimizing folate losses during tofu preparation. This study suggests that the consumption of 100 g of deep-fried tofu may satisfy 21% of the recommended dietary intake (RDI).
PRODUCTION OF POLYCLONAL ANTIBODY TO THE COAT PROTEIN OF CITRUS TRISTEZA VIRUS IN CHICKEN EGGS
Authors: Nurhadi Nurhadi , Sijam Kamaruzaman , Sulaiman Inon 
Published: December 2016

Citrus tristeza virus (CTV) is one of the most destructive diseases in many citrus growing areas of Indonesia. Effective strategies for controlling CTV depend on diagnostic procedure namely enzyme-linked immunosorbent assay (ELISA). Study aimed to purify the CTV antigen and produced its polyclonal antibody. Virion of the severe CTV isolate designated UPM/ T-002 was concentrated by polyethylene glycol (PEG) precipitation combined with low speed centrifugation. Semipurified antigen was further purified by sodium dodecyl sulphatepolyacrylamide gel electrophoresis (SDS-PAGE). The specific coat protein (CP) band of CTV with molecular weight of 25 kD was excised and eluted using elution buffer containing 0.25 M Tris-HCl pH 6.8 + 0.1% SDS, then used as antigen for injection into 6-month-old female of White Leghorn chicken. Results, showed than the specific polyclonal antibody raised against the 25-kDa CP had a titer of approximately 104, gave low background reaction with healthy plant sap and reacted specifically with CTV isolates. The reaction was equally strong for a severe, a moderate, a mild, and a symptomless isolate, suggesting a broad reaction range of this antibody toward different CTV isolates. Optimal virus titer can be obtained since virus loss during purification could be minimized and the highly purified antigen as an immunogen could be obtained by cutting out the CP band from SDS-PAGE gels. Large amount of highly titer of CTV antibody can be produced in chicken egg. The simplicity of the procedure makes it economically acceptable and technically adoptable because the antibody can be produced in basic laboratory.
SCREENING OF SOIL BACTERIA FOR PLANT GROWTH PROMOTION ACTIVITIES IN VITRO
Authors: Husen Edi 
Published: December 2016

Fourteen isolates of soil bacteria, including two known plant growth promoting rhizobacteria (PGPR) strains, Azotobacter vinelandii Mac 259 and Bacillus cereus UW 85, were tested in vitro. Parameters assessed were indoleacetic acid (IAA) production, phosphate solubilization, dinitrogen fixation, and siderophore (Fe-III chelating agent) production. IAA production was assayed colorimetrically using ferric chlorideperchloric acid reagent. Phosphate-solubilization and siderophore production were tested qualitatively by plating the bacteria in Pikovskaya and chrome azurol S agar, respectively. The ability to fix dinitrogen was measured based on nitrogenase activity of the bacteria by gas chromatography. The results showed that twelve isolates produced IAA, ranged from 2.09 to 33.28 µmol ml-1. The ability to solubilize precipitated phosphate was positively exhibited by four isolates (BS 58, BTS, TCaR 61, and BTCaRe 65). Seven isolates including Mac 259 positively produced siderophore. None of the isolates showed nitrogenase activity. Only one isolate (TS 3) did not exhibit any of the traits tested. Isolate TCeRe 60 and reference strain Mac 259 were found to have IAA- and siderophore-producing traits. Four P-solubilizing bacteria (BS 58, BTS, TCaR 61, and BTCaRe 65) were also IAA- and siderophore-producing bacteria. Potential use of these PGPR isolates needs further test in enhancing plant growth.
IMPROVEMENT OF SEEDLING ESTABLISHMENT OF WET SEEDED RICE USING GA3 AND IBA AS SEED TREATMENT
Authors: Wahyuni Sri , Sinniah Uma R. , Yusop Mohd. Khanif , Amarthalingam Rajan 
Published: December 2016

Direct seeding has some advantages compared to transplanting system in rice, however there are some constraints need to be addressed. One constraint generally faced in the wet seeded rice is poor stand establishment. The experiment was conducted to improve seedling establishment by using selected growth regulators. Seeds of four rice cultivars, i.e. Memberamo, Widas, MR 84, and MR 219 were treated with GA3 (gibberellic acid-3) of 25, 50, and 100 mg 1-1, and IBA (indole-3 butyric acid) of 10, 20, and 40 mg l-1. Results showed that cultivar response to GA3 was similar in all parameters observed, however the response of cultivars to IBA was different at the initial stage. In Indonesian cultivars (Memberamo and Widas), shoot length of IBA treated seedlings was comparable to the control, but the IBA treated seedlings of Malaysian cultivars (MR 84 and MR 219) had slightly shorter shoots compared to the control. GA3 as seed treatment induced favorable early emergence and shoot growth in the initial stage, but the shoots were etiolated and resulted in susceptible to lodging even in the vegetative stage. In comparison, exogenous application of IBA resulted in high number of adventitious roots contributing towards better establishment of seedling with broader and greener leaves. The growth regulator was lost its effect by 2 or 3 weeks after sowing. All IBA concentrations also did not show any significant differences on growth parameters or have any detrimental effect on grain yield in all cultivar tested. IBA 10 mg l-1 was sufficient in providing the required improvement in the rice seedlings.
BROWN ROOT ROT DISEASE OF CASHEW IN WEST NUSA TENGGARA: DISTRIBUTION AND ITS CAUSAL ORGANISM
Authors: Supriadi Supriadi , Adhia E.M. , Wahyuno D. , Rahayuningsih S. , Karyani N. , Dahsyat M. 
Published: December 2016

Brown root rot disease is a major constraint on cashew plantation in Pekat District, West Nusa Tenggara. Its causal agent has not been characterized. This paper describes efforts to study the pathogen, distribution and loss. Field study was conducted in Pekat District in 2003. Laboratory experiments to isolate and test the causal agent were conducted in the Indonesian Spices and Medicinal Crops Research Institute, Bogor. Research results showed that the disease was found widespread in several villages in Pekat District, such as Pekat, Beringin Jaya, Sorinomo, and Nangamiro. Total number of died cashew trees was 1,075 equals to 5,106 kg kernel yield lost, worth Rp20.5 million. Infected trees showed leaf yellowing and defoliation leading to die. The lateral and taproots near collar were encrusted with gravel, earth, and brown mycelia sleeves. The fungus produced arthrospores and brown pigmentation on agar medium containing 0.05% gallic acid. An isolate of the fungus induced typical disease symptoms following inoculation on 5 month-old cashew seedlings. These results indicated that the causal agent of mass decline of cashew in Pekat District is Phellinus noxius. In field, the fungus also infects a barrier tree (Lannea coromandelica [Houtt.] Merr.) (Anacardiaceae), locally known as kedondong pagar or kayu bantenan.
CONTRIBUTION TO THE PHYLOGENY OF THE PANGASIIDAE BASED ON MITOCHONDRIAL 12S RDNA
Authors: Pouyaud L. , Gustiano R. , Teugels G.G. 
Published: December 2016

Catfishes are generally one of the economically important groups of fresh and brackish water fishes in the world. In many countries, they form a significant part of inland fisheries, and several species have been introduced in fish culture. Judging from literature, the main constraint to cultivate wild species and to optimise the production of pangasiid catfishes is due to the poorly documented systematics of this family. In the present contribution, the phylogenetic relationships within Pangasiidae are studied to contribute to a better insight in their taxonomy and evolution. The genetic relatedness is inferred using mitochondrial 12S rDNA gene sequences. To resolve the phylogenetic position of Laides in this group of catfish, five genera of Asian and African Schilbeidae are also considered. The results showed that a species group (complex) could be clearly seen in the genetic tree. Pangasius is more derive than the other genera. By using approximate molecular clock/evolutionary calibration from mitochondrial gene, a new episode of speciation for the family marked explosive radiation about 5- 8 million years ago (mya). This adaptive radiation extended until the Late Pleistocene. Regarding the relationships between the Pangasiidae and Schilbeidae, two families show an allopatric distribution with slight overlap. The Pangasiidae occur mainly in Southeast Asia, while the Schilbeidae are seen mainly on the Indian subcontinent (including Myanmar) and Africa. It confirms the separation between Schilbeidae and Pangasiidae occurred in the Early Miocene.
PATHOTYPE PROFILE OF Xanthomonas oryzae pv. oryzae ISOLATES FROM THE RICE ECOSYSTEM IN JAVA
Authors: Suparyono Suparyono , Sudir Sudir , Suprihanto Suprihanto 
Published: December 2016

At present, bacterial leaf blight of rice caused by Xanthomonas oryzae pv. oryzae is highly damaging to rice production in Indonesia as most of the existing commercial rice varieties are susceptible to the existing pathotypes of the bacteria. To solve such problems, varietal rotation should be based on information on the existence and dominance of local pathotypes in a particular rice ecosystem. To obtain this information, a total of 117 isolates of X. oryzae pv. oryzae, collected from West Java, Central Java, and Yogyakarta, were evaluated for their pathotype variation on five differential rice varieties during the dry season of 2000. When disease severity was &lt; 10%, the reaction was classified as resistant (R) and when &gt; 11%, was susceptible (S). The data indicated that 3.42% of the isolates were pathotype III, 12.82% were pathotype IV, and 83.76% were pathotype VIII. In West Java, the bacterial pathotypes III, IV, and VIII were 4.94%, 14.81%, and 80.25%, respectively. In low elevation areas, 4.94%, 9.88%, and 45.68% were pathotypes III, IV, and VIII, respectively and in medium areas, 4.94% were pathotypes IV and 34.57% were pathotype VIII. In Central Java, no pathotype III was found, while pathotypes IV and VIII were as much as 4.52% and 90.48%, respectively. In low elevation areas, no pathotypes III was recovered, and a total of 9.53% and 76.19% were identified as pathotypes IV and VIII, respectively, and in medium areas only pathotype VIII (14.29%) was identified. In Yogyakarta, pathotypes IV and VIII were found. In low elevation areas, 6.67% and 93.33% were pathotypes IV and VIII, respectively and in medium areas, 14.29% and 85.71% were pathotypes IV and VIII, respectively. The data indicated that variation in pathotype composition over different locations was obvious and locally specific resistant varieties to the disease are needed in the management of this important bacterial disease in rice.
IDENTIFICATION OF WIDE COMPATIBILITY VARIETIES IN SOME TROPICAL JAPONICA RICE
Authors: Hairmansis A. , Aswidinnoor Hajrial , Trikoesoemaningtyas Trikoesoemaningtyas , Suwarno Suwarno 
Published: December 2016

The F1 hybrid sterility in indica/japonica crosses is the major barrier in developing hybrid rice varieties between these two diverse germplasm. The sterility problem in japonica/indica hybrids can be overcome by using wide compatibility genes. The objective of this study was to identify wide compatibility varieties (WCVs) in some tropical japonica rice. Twenty five tropical japonica varieties as male parents were crossed with indica (IR64) and japonica (Akitakomachi) testers as female parents. The crosses were planted following a randomized complete block design with three replications. Varieties having average spikelet fertility of more than 70% with both the indica and japonica testers were rated as WCVs. Result from this study showed that six tropical japonica varieties were classified as WCVs, i.e., Cabacu, Grogol, Kencana Bali, Klemas, Lampung Lawer, and Napa. Hybrid sterility is caused by partial sterility of male and female gametes. The WCVs from the present study can be used in hybrid rice breeding program to solve hybrid sterility in indica/japonica hybrids.
THE USE OF gusA REPORTER GENE TO MONITOR THE SURVIVAL OF INTRODUCED BACTERIA IN THE SOIL
Authors: Husen Edi 
Published: December 2016

An effective marker to monitor the survival of introduced bacteria in the soil is required for further evaluation of their beneficial effects on plant growth. This study tested the use of gusA gene as a marker to trace the fate of three Gram negative bacteria in the root, rhizosphere, and soil. The study was conducted at the laboratory and greenhouse of the National Institute of Molecular Biology and Biotechnology, Philippines from January to December 2001. Isolates TCaR 61 and TCeRe 60, and Azotobacter vinelandii Mac 259 were selected as test bacteria based on their ability to produce indole-3acetic acid and solubilize precipitated phosphate, which may promote plant growth in the field. These bacteria were marked with gusA reporter gene from Escherichia coli strain S17-1(λ-pir) containing mTn5SSgusA21. The gusA (β-glucuronidase) gene from the donor (E. coli) was transferred to each bacterium (recipient) through bacterial conjugation in mating procedures using tryptone-yeast agar followed by the selection of the transconjugants (bacteria receiving gusA) in tryptone-yeast agar supplemented with double antibiotics and X-GlcA (5bromo-4chloro- 3indoxyl-β-D-glucuronic acid). The antibiotics used were rifampicin and either streptomycin or spectinomycin based on antibiotic profiles of the donor and recipients. The results showed that the insertion of gusA gene into bacterial genomes of the recipient did not impair its phenotypic traits; the growth rates of the transconjugants as well as their ability to produce indole-3acetic acid and solubilize precipitated phosphate in pure culture were similar to their wild types. All transconjugants colonized the roots of hot pepper (Capsicum annuum L.) and survived in the rhizosphere and soil until the late of vegetative growth stage. The distinct blue staining of transconjugants as the expression of gusA gene in media containing X-GlcA coupled with their resistance to rifampicin and streptomycin or spectinomycin made them easier to be recognized and evaluated.<br /><br />