bluuebunny/crossref_metadata_2025_split huggingface dataset:
Global warming-induced upper-ocean freshening and the intensification of super typhoons
Authors: Balaguru Karthik , Foltz Gregory R. , Leung L. Ruby , Emanuel Kerry A. 
Published: November 2016

AbstractSuper typhoons (STYs), intense tropical cyclones of the western North Pacific, rank among the most destructive natural hazards globally. The violent winds of these storms induce deep mixing of the upper ocean, resulting in strong sea surface cooling and making STYs highly sensitive to ocean density stratification. Although a few studies examined the potential impacts of changes in ocean thermal structure on future tropical cyclones, they did not take into account changes in near-surface salinity. Here, using a combination of observations and coupled climate model simulations, we show that freshening of the upper ocean, caused by greater rainfall in places where typhoons form, tends to intensify STYs by reducing their ability to cool the upper ocean. We further demonstrate that the strengthening effect of this freshening over the period 1961–2008 is ∼53% stronger than the suppressive effect of temperature, whereas under twenty-first century projections, the positive effect of salinity is about half of the negative effect of ocean temperature changes.
Atomic structure of the innexin-6 gap junction channel determined by cryo-EM
Authors: Oshima Atsunori , Tani Kazutoshi , Fujiyoshi Yoshinori 
Published: December 2016

AbstractInnexins, a large protein family comprising invertebrate gap junction channels, play an essential role in nervous system development and electrical synapse formation. Here we report the cryo-electron microscopy structures of Caenorhabditis elegans innexin-6 (INX-6) gap junction channels at atomic resolution. We find that the arrangements of the transmembrane helices and extracellular loops of the INX-6 monomeric structure are highly similar to those of connexin-26 (Cx26), despite the lack of significant sequence similarity. The INX-6 gap junction channel comprises hexadecameric subunits but reveals the N-terminal pore funnel, consistent with Cx26. The helix-rich cytoplasmic loop and C-terminus are intercalated one-by-one through an octameric hemichannel, forming a dome-like entrance that interacts with N-terminal loops in the pore. These observations suggest that the INX-6 cytoplasmic domains are cooperatively associated with the N-terminal funnel conformation, and an essential linkage of the N-terminal with channel activity is presumably preserved across gap junction families.
Plasma Proteomic Study in Pulmonary Arterial Hypertension Associated with Congenital Heart Diseases
Authors: Zhang Xi , Hou Hai-Tao , Wang Jun , Liu Xiao-Cheng , Yang Qin , He Guo-Wei 
Published: November 2016

AbstractPulmonary arterial hypertension associated with congenital heart disease (CHD-PAH) has serious consequence and plasma protein profiles in CHD-PAH are unknown. We aimed to reveal the differential plasma proteins in 272 CHD patients with or without PAH. Various types of CHD-PAH were studied. Differential plasma proteins were first detected by iTRAQ proteomic technology and those with significant clinical relevance were selected for further ELISA validation in new cohort of patients. Among the 190 differential plasma proteins detected by iTRAQ, carbamoyl-phosphate synthetase I (CPSI, related to urea cycle and endogenous nitric oxide production) and complement factor H-related protein 2 (CFHR2, related to complement system and coagulant mechanism) were selected for further ELISA validation in new cohort of 152 patients. Both CPSI and CFHR2 were down-regulated with decreased plasma levels (p < 0.01). Thus, we for the first time in CHD-PAH patients identified a large number of differential plasma proteins. The decreased CPSI expression in CHD-PAH patients may reveal a mechanism related to endogenous nitric oxide and the decrease of CFHR2 protein may demonstrate the deficiency of the immune system and coagulation mechanism. The findings may open a new direction for translational medicine in CHD-PAH with regard to the diagnosis and progress of the disease.
Statistical power considerations in genotype-based recall randomized controlled trials
Authors: Atabaki-Pasdar Naeimeh , Ohlsson Mattias , Shungin Dmitry , Kurbasic Azra , Ingelsson Erik , Pearson Ewan R. , Ali Ashfaq , Franks Paul W. 
Published: November 2016

AbstractRandomized controlled trials (RCT) are often underpowered for validating gene-treatment interactions. Using published data from the Diabetes Prevention Program (DPP), we examined power in conventional and genotype-based recall (GBR) trials. We calculated sample size and statistical power for gene-metformin interactions (vs. placebo) using incidence rates, gene-drug interaction effect estimates and allele frequencies reported in the DPP for the rs8065082 SLC47A1 variant, a metformin transported encoding locus. We then calculated statistical power for interactions between genetic risk scores (GRS), metformin treatment and intensive lifestyle intervention (ILI) given a range of sampling frames, clinical trial sample sizes, interaction effect estimates, and allele frequencies; outcomes were type 2 diabetes incidence (time-to-event) and change in small LDL particles (continuous outcome). Thereafter, we compared two recruitment frameworks: GBR (participants recruited from the extremes of a GRS distribution) and conventional sampling (participants recruited without explicit emphasis on genetic characteristics). We further examined the influence of outcome measurement error on statistical power. Under most simulated scenarios, GBR trials have substantially higher power to observe gene-drug and gene-lifestyle interactions than same-sized conventional RCTs. GBR trials are becoming popular for validation of gene-treatment interactions; our analyses illustrate the strengths and weaknesses of this design.
Tuning the Weak Ferromagnetic States in Dysprosium Orthoferrite
Authors: Cao Shixun , Chen Lei , Zhao Weiyao , Xu Kai , Wang Guohua , Yang Yali , Kang Baojuan , Zhao Hongjian , Chen Peng , Stroppa Alessandro , Zheng Ren-Kui , Zhang Jincang , Ren Wei , Íñiguez Jorge , Bellaiche L. 
Published: November 2016

AbstractRFeO3 orthoferrites, where R is a rare-earth ion of the lanthanide series, are attracting attention mostly because of their promising fast spin dynamics. The magnetic properties of these materials seem to crucially depend on whether the magnetizations of the R and Fe ions’ weak ferromagnetic (WFM) components are parallel or antiparallel to each other. Here, we report an extensive investigation of a high-quality DyFeO3 single crystal in which the induced Dy3+ magnetization (FDy) has a natural tendency to be antiparallel to Fe3+ sublattice magnetization (FFe) within a large temperature window. Moreover, we find that specific variations of temperature and applied magnetic fields allow us to make FDy parallel to FFe, or force a spin-flip transition in FFe, among other effects. We found three different magnetic states that respond to temperature and magnetic fields, i.e. linear versus constant or, alternatively, presenting either behavior depending on the history of the sample. An original magnetic field-versus-temperature phase diagram is constructed to indicate the region of stability of the different magnetic phases, and to reveal the precise conditions yielding sudden spin switching and reversals. Knowledge of such a phase diagram is of potential importance to applications in spintronics and magnetic devices.
Flexible controls of scattering clouds using coding metasurfaces
Authors: Liu Shuo , Cui Tie Jun 
Published: November 2016

AbstractMetamaterials or metasurfaces have been designed to precisely manipulate the scattering at every angle. Here, we propose to control the probability of random scattering appearing in the desired range of angles, which is defined in this letter as scattering cloud. We present a controllable random metasurface by simply adding a random coding sequence to gradient coding sequence. It is shown that the direction and size of the scattering cloud can be arbitrarily engineered. We demonstrate the exotic behavior of the scattering cloud by making an analogy to the electron cloud in quantum mechanics. A new coding particle featuring low-interference with neighboring coding particles is designed to realize the controllable random surface, which demonstrates highly consistent results to the theoretical calculations using fast Fourier transform. The exciting phenomena and versatile behaviors of scattering clouds and their probabilities enabled by controllable random surfaces will lead to diversified applications in the fields of electromagnetic waves and acoustic waves.
Characteristic tetrapod musculoskeletal limb phenotype emerged more than 400 MYA in basal lobe-finned fishes
Authors: Diogo Rui , Johnston Peter , Molnar Julia L. , Esteve-Altava Borja 
Published: November 2016

AbstractPrevious accounts of the origin of tetrapod limbs have postulated a relatively sudden change, after the split between extant lobe-finned fish and tetrapods, from a very simple fin phenotype with only two muscles to the highly complex tetrapod condition. The evolutionary changes that led to the muscular anatomy of tetrapod limbs have therefore remained relatively unexplored. We performed dissections, histological sections, and MRI scans of the closest living relatives of tetrapods: coelacanths and lungfish. Combined with previous comparative, developmental and paleontological information, our findings suggest that the characteristic tetrapod musculoskeletal limb phenotype was already present in the Silurian last common ancestor of extant sarcopterygians, with the exception of the autopod (hand/foot) structures, which have no clear correspondence with fish structures. Remarkably, the two major steps in this long process – leading to the ancestral fin anatomy of extant sarcopterygians and limb anatomy of extant tetrapods, respectively – occurred at the same nodes as the two major similarity bottlenecks that led to the striking derived myological similarity between the pectoral and pelvic appendages within each taxon. Our identification of probable homologies between appendicular muscles of sarcopterygian fish and tetrapods will allow more detailed reconstructions of muscle anatomy in early tetrapods and their relatives.
Virus infection drives IL-2 antibody complexes into pro-inflammatory agonists in mice
Authors: Lee Wendy W. L. , Teo Teck-Hui , Lum Fok-Moon , Andiappan Anand K. , Amrun Siti Naqiah , Rénia Laurent , Rötzschke Olaf , Ng Lisa F. P. 
Published: November 2016

AbstractThe use of IL-2/JES6-1 Ab complex (IL-2 Ab Cx) has been considered as a potential therapeutic for inflammatory diseases due to its selective expansion of regulatory T cells (Tregs) in mice. Here, IL-2 Ab Cx was explored as a therapeutic agent to reduce joint inflammation induced by chikungunya virus, an alphavirus causing debilitating joint disease globally. Virus-infected mice treated with IL-2 Ab Cx exhibited exacerbated joint inflammation due to infiltration of highly activated CD4+ effector T cells (Teffs). Virus infection led to upregulation of CD25 on the Teffs, rendering them sensitive towards IL2 Ab Cx. Ready responsiveness of Teffs to IL-2 was further demonstrated in healthy human donors, suggesting that the use of IL-2 Ab Cx in humans is not suitable. Changes in IL-2 sensitivity during active virus infection could change the responsive pattern towards the IL-2 Ab Cx, resulting in the expansion of pro-inflammatory rather than anti-inflammatory responses.
No evidence of NRAS mutation in squamous cell anal carcinoma (SCAC)
Authors: Capelli Laura , Casadei Gardini Andrea , Scarpi Emanuela , Frassineti Giovanni Luca , Saragoni Luca , Puccetti Maurizio , Scartozzi Mario , Giannini Massimo , Tamberi Stefano , Corbelli Jody , Ulivi Paola 
Published: November 2016

AbstractEpidermal growth factor receptor (EGFR) is usually expressed in squamous cell anal carcinoma (SCAC) and anti-EGFR agents could represent a valid treatment strategy, also considering that KRAS and BRAF mutations are rare events in this type of cancer. However, no data are available on NRAS status in SCAC. In this study we analyzed NRAS status (exons 2–4) by Pyrosequencing in a case series of 50 SCAC patients previously characterized in our laboratory for KRAS, BRAF, PIK3CA mutations and HPV and HIV infections. We found no mutation in NRAS gene. These results confirm that since the principal anti-EGFR resistance mechanisms are almost absent in SCAC, anti-EGFR agents should be considered for the treatment of this type of cancer.
Shared somatosensory and motor functions in musicians
Authors: Hosoda Moe , Furuya Shinichi 
Published: November 2016

AbstractSkilled individuals are characterized by fine-tuned perceptual and motor functions. Here, we tested the idea that the sensory and motor functions of highly-trained individuals are coupled. We assessed the relationships among multifaceted somatosensory and motor functions of expert pianists. The results demonstrated a positive covariation between the acuity of weight discrimination and the precision of force control during piano keystrokes among the pianists but not among the non-musicians. However, neither the age of starting musical training nor the total amount of life-long piano practice was correlated with these sensory-motor functions in the pianists. Furthermore, a difference between the pianists and non-musicians was absent for the weight discrimination acuity but present for precise force control during keystrokes. The results suggest that individuals with innately superior sensory function had finer motor control only in a case of having undergone musical training. Intriguingly, the tactile spatial acuity of the fingertip was superior in the pianists compared with the non-musicians but was not correlated with any functions representing fine motor control among the pianists. The findings implicate the presence of two distinct mechanisms of sensorimotor learning elicited by musical training, which occur either independently in individual sensorimotor modalities or through interacting between modalities.
Exploring the molecular basis of age-related disease comorbidities using a multi-omics graphical model
Authors: Zierer Jonas , Pallister Tess , Tsai Pei-Chien , Krumsiek Jan , Bell Jordana T. , Lauc Gordan , Spector Tim D , Menni Cristina , Kastenmüller Gabi 
Published: November 2016

AbstractAlthough association studies have unveiled numerous correlations of biochemical markers with age and age-related diseases, we still lack an understanding of their mutual dependencies. To find molecular pathways that underlie age-related diseases as well as their comorbidities, we integrated aging markers from four different high-throughput omics datasets, namely epigenomics, transcriptomics, glycomics and metabolomics, with a comprehensive set of disease phenotypes from 510 participants of the TwinsUK cohort. We used graphical random forests to assess conditional dependencies between omics markers and phenotypes while eliminating mediated associations. Applying this novel approach for multi-omics data integration yields a model consisting of seven modules that represent distinct aspects of aging. These modules are connected by hubs that potentially trigger comorbidities of age-related diseases. As an example, we identified urate as one of these key players mediating the comorbidity of renal disease with body composition and obesity. Body composition variables are in turn associated with inflammatory IgG markers, mediated by the expression of the hormone oxytocin. Thus, oxytocin potentially contributes to the development of chronic low-grade inflammation, which often accompanies obesity. Our multi-omics graphical model demonstrates the interconnectivity of age-related diseases and highlights molecular markers of the aging process that might drive disease comorbidities.
Intravitreal infusion: A novel approach for intraocular drug delivery
Authors: Tian Jiao , Liu Jia , Liu Xiao , Xiao Yangyan , Tang Luosheng 
Published: November 2016

AbstractIntraocular injection has become an increasingly important intervention in the treatment of posterior segment diseases. However, an acute intraocular pressure (IOP) elevation after intravitreal injection is a common concern. This study aimed to evaluate the efficacy of intravitreal infusion in maintaining stable IOP in a rabbit model. Trypan blue (TB) 0.06% with an external pump was used to evaluate intravitreal infusion in rabbit eyes. Groups A (50 μL), B (100 μL), C (150 μL), and D (200 μL) were slowly infused over 30 minutes with TB. As a control, Group E underwent conventional intravitreal injection of 100 μL of TB. Group F received a bolus infusion of 100 μL of TB within 1 minute. The mean increases in IOP during infusion for each group were: Group A (7.93 ± 3.80 mmHg), B (13.97 ± 3.17 mmHg), C (19.91 ± 6.06 mmHg) and D (29.38 ± 8.97 mmHg). Immediately post-injection in group E the mean increase in IOP amounted to 34.33 ± 6.57 mmHg. The mean increase in IOP of group F after bolus infusion was 49.89 ± 1.71 mmHg. Intravitreal infusion maintains a stable IOP and provides a controlled infusion speed compared with intravitreal injection.
Early evidence of stone tool use in bone working activities at Qesem Cave, Israel
Authors: Zupancich Andrea , Nunziante-Cesaro Stella , Blasco Ruth , Rosell Jordi , Cristiani Emanuela , Venditti Flavia , Lemorini Cristina , Barkai Ran , Gopher Avi 
Published: November 2016

AbstractFor a long while, the controversy surrounding several bone tools coming from pre-Upper Palaeolithic contexts favoured the view of Homo sapiens as the only species of the genus Homo capable of modifying animal bones into specialised tools. However, evidence such as South African Early Stone Age modified bones, European Lower Palaeolithic flaked bone tools, along with Middle and Late Pleistocene bone retouchers, led to a re-evaluation of the conception of Homo sapiens as the exclusive manufacturer of specialised bone tools. The evidence presented herein include use wear and bone residues identified on two flint scrapers as well as a sawing mark on a fallow deer tibia, not associated with butchering activities. Dated to more than 300 kya, the evidence here presented is among the earliest related to tool-assisted bone working intended for non-dietary purposes, and contributes to the debate over the recognition of bone working as a much older behaviour than previously thought. The results of this study come from the application of a combined methodological approach, comprising use wear analysis, residue analysis, and taphonomy. This approach allowed for the retrieval of both direct and indirect evidence of tool-assisted bone working, at the Lower Palaeolithic site of Qesem Cave (Israel).
Creating new layered structures at high pressures: SiS2
Authors: Plašienka Dušan , Martoňák Roman , Tosatti Erio 
Published: November 2016

AbstractOld and novel layered structures are attracting increasing attention for their physical, electronic, and frictional properties. SiS2, isoelectronic to SiO2, CO2 and CS2, is a material whose phases known experimentally up to 6 GPa exhibit 1D chain-like, 2D layered and 3D tetrahedral structures. We present highly predictive ab initio calculations combined with evolutionary structure search and molecular dynamics simulations of the structural and electronic evolution of SiS2 up to 100 GPa. A highly stable CdI2-type layered structure, which is octahedrally coordinated with space group "Equation missing" surprisingly appears between 4 and up to at least 100 GPa. The tetrahedral-octahedral switch is naturally expected upon compression, unlike the layered character realized here by edge-sharing SiS6 octahedral units connecting within but not among sheets. The predicted phase is semiconducting with an indirect band gap of about 2 eV at 10 GPa, decreasing under pressure until metallization around 40 GPa. The robustness of the layered phase suggests possible recovery at ambient pressure, where calculated phonon spectra indicate dynamical stability. Even a single monolayer is found to be dynamically stable in isolation, suggesting that it could possibly be sheared or exfoliated from bulk "Equation missing"-SiS2.
Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient
Authors: Monard C. , Gantner S. , Bertilsson S. , Hallin S. , Stenlid J. 
Published: November 2016

AbstractObservations of distributions of microorganisms and their differences in community composition across habitats provide evidence of biogeographical patterns. However, little is known about the processes controlling transfers across habitat gradients. By analysing the overall microbial community composition (bacteria, fungi, archaea) across a terrestrial-freshwater gradient, the aim of this study was to understand the spatial distribution patterns of populations and identify taxa capable of crossing biome borders. Barcoded 454 pyrosequencing of taxonomic gene markers was used to describe the microbial communities in adjacent soil, freshwater and sediment samples and study the role of biotic and spatial factors in shaping their composition. Few habitat generalists but a high number of specialists were detected indicating that microbial community composition was mainly regulated by species sorting and niche partitioning. Biotic interactions within microbial groups based on an association network underlined the importance of Actinobacteria, Sordariomycetes, Agaricomycetes and Nitrososphaerales in connecting among biomes. Even if dispersion seemed limited, the shore of the lake represented a transition area, allowing populations to cross the biome boundaries. In finding few broadly distributed populations, our study points to biome specialization within microbial communities with limited potential for dispersal and colonization of new habitats along the terrestrial-freshwater continuum.
Elderly suicide trends in the context of transforming China, 1987–2014
Authors: Zhong Bao-Liang , Chiu Helen F. K. , Conwell Yeates 
Published: November 2016

AbstractIn the context of rapid ageing, understanding the time-trend of elderly suicide (ES) could inform China’s efforts on suicide prevention. We examined time-trends in Chinese ES rates (ESRs) from 1987 to 2014, a period of profound social changes. Suicide rates by residence (rural/urban), gender, and 5-year age-group (65+) in 1987–2014 were provided by the Chinese Ministry of Health. Time-trends were analyzed with joinpoint analysis. The time-trend of national ESRs was downward (average annual percent change [AAPC] = −3.7, P < 0.001): 76.6/100000 in 1987 and 30.2/100000 in 2014. However, the time-trend of corresponding percentages of ESs among the total suicides was monotonically increasing (AAPC = 3.4, P < 0.001): 16.9% in 1987 to 41.2% in 2014. The time-trends in ESRs of both rural and urban men and women were decreasing, but only the rural trends were significant (P < 0.001). Rural-urban and male-female differences in ESRs were decreasing over time (slope = −4.2 and −3.0, P ≤ 0.006), but the rural-urban and male-female ESR differences in 2014 remained large (16.3/100000 and 9.8/100000, P < 0.001). While national ESRs decreased significantly during the past three decades, the current ESR remains high in China. Further, the age-pattern of Chinese suicide is transitioning to elderly predominance. ES, particularly rural ES, should be a public health priority in China.