bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ocean currents modify the coupling between climate change and biogeographical shifts
Authors: García Molinos J. , Burrows M. T. , Poloczanska E. S. 
Published: April 2017

AbstractBiogeographical shifts are a ubiquitous global response to climate change. However, observed shifts across taxa and geographical locations are highly variable and only partially attributable to climatic conditions. Such variable outcomes result from the interaction between local climatic changes and other abiotic and biotic factors operating across species ranges. Among them, external directional forces such as ocean and air currents influence the dispersal of nearly all marine and many terrestrial organisms. Here, using a global meta-dataset of observed range shifts of marine species, we show that incorporating directional agreement between flow and climate significantly increases the proportion of explained variance. We propose a simple metric that measures the degrees of directional agreement of ocean (or air) currents with thermal gradients and considers the effects of directional forces in predictions of climate-driven range shifts. Ocean flows are found to both facilitate and hinder shifts depending on their directional agreement with spatial gradients of temperature. Further, effects are shaped by the locations of shifts in the range (trailing, leading or centroid) and taxonomic identity of species. These results support the global effects of climatic changes on distribution shifts and stress the importance of framing climate expectations in reference to other non-climatic interacting factors.
Metformin disrupts malignant behavior of oral squamous cell carcinoma via a novel signaling involving Late SV40 factor/Aurora-A
Authors: Chen Chang-Han , Tsai Hsin-Ting , Chuang Hui-Ching , Shiu Li-Yen , Su Li-Jen , Chiu Tai-Jan , Luo Sheng-Dean , Fang Fu-Min , Huang Chao-Cheng , Chien Chih-Yen 
Published: April 2017

AbstractConventional therapeutic processes in patient with OSCC are associated with several unfavorable effects leading to patients with poor survival rate. Metformin has been shown to protect against a variety of specific diseases, including cancer. However, the precise roles and mechanisms underlying the therapeutic effects of metformin on OSCC remain elusive. In the current study, in vitro and xenograft model experiments revealed that metformin inhibited growth and metastasis of oral cancer cells. Importantly, metformin-restrained tumorigenesis of oral cancer was accompanied with strong decrease of both Aurora-A and Late SV40 Factor (LSF) expressions. Furthermore, LSF contributed to Aurora-A-elicited malignancy behaviors of oral cancer via binding to the promoter region of Aurora-A. A significant correlation was observed between LSF and Aurora-A levels in a cohort of specimens of oral cancer. These findings showed that a novel LSF/Aurora-A-signaling inhibition supports the rationale of using metformin as potential OSCC therapeutics.
Picomolar Detection of Hydrogen Peroxide using Enzyme-free Inorganic Nanoparticle-based Sensor
Authors: Neal Craig J. , Gupta Ankur , Barkam Swetha , Saraf Shashank , Das Soumen , Cho Hyoung J. , Seal Sudipta 
Published: April 2017

AbstractA philosophical shift has occurred in the field of biomedical sciences from treatment of late-stage disease symptoms to early detection and prevention. Ceria nanoparticles (CNPs) have been demonstrated to neutralize free radical chemical species associated with many life-threatening disease states such as cancers and neurodegenerative diseases by undergoing redox changes (Ce3+  ↔ Ce4+). Herein, we investigate the electrochemical response of multi-valent CNPs in presence of hydrogen peroxide and demonstrate an enzyme-free CNP-based biosensor capable of ultra-low (limit of quantitation: 0.1 pM) detection. Several preparations of CNPs with varying Ce3+:Ce4+ are produced and are analyzed by electrochemical methods. We find that an increasing magnitude of response in cyclic voltammetry and chronoamperometry correlates with increasing Ce4+ relative to Ce3+ and utilize this finding in the design of the sensor platform. The sensor retains sensitivity across a range of pH’s and temperatures, wherein enzyme-based sensors will not function, and in blood serum: reflecting selectivity and robustness as a potential implantable biomedical device.
The conidial mucilage, natural film coatings, is involved in environmental adaptability and pathogenicity of Hirsutella satumaensis Aoki
Authors: Qu Jiaojiao , Zou Xiao , Yu Jianping , Zhou Yeming 
Published: April 2017

AbstractThe Hirsutella genus is very special asexually-reproducing pathogens of insects by reduced sporulation, host specificity and spores covered by a thick mucilage layer. However, the ecological function of conidial mucilage remains elusive. In this study, the possible ecological role of conidial mucilage from the entomopathogenic fungus Hirsutella satumaensis was functionally investigated through tolerance, adherence and insect bioassays involving aerial conidia (AC) and mucilage-free conidia (MFC). Measurements of hydrophobicity using microbial adhesion to hydrocarbons (MATH) indicated that mucilage is main contributor to the surface hydrophobicity of AC. When subjected in tolerance assays to extreme temperatures, high chemical pressure, extended exposure to ultraviolet radiation and cold stress, AC produced more colonies, exhibited higher conidiation and germination percentages than those of MFC. In adhesion assays, MFC displayed an approximately 40% reduction in adherence to locust, dragonfly cuticle and onion epidermis when washed with 0.05% Tween 20. Similarly, Galleria mellonella and Plutella xylostella larvae infected with mucilage-producing AC experienced a relatively higher mortality rate. Our findings suggest that mucilage is critical to the ecological adaptability of H. satumaensis, where it plays positive roles on maintenance of spore surface hydrophobicity, enhancement of spore resistance to extreme environments and strengthening of spore adhesion and host pathogenicity.
One-year daily consumption of buttermilk drink containing lutein-enriched egg-yolks does not affect endothelial function in fasting and postprandial state
Authors: van der Made Sanne M. , Berendschot Tos T. J. M. , Kijlstra Aize , Plat Jogchum 
Published: April 2017

AbstractPrevious results have shown that one-year daily consumption of a lutein-enriched egg yolk containing dairy drink did not significantly affect fasting serum lipid and lipoprotein concentrations in adults with early signs of macular degeneration. The current study further substantiates these findings with parameters reflecting endothelial function. Additionally, we extend our observations from the fasting to the postprandial situation. Subjects participated in a 1-y randomized placebo-controlled dietary intervention trial. 52 subjects were included in the active (Egg) group and 49 in the control (Con) group. Changes in postprandial biochemistry (triacylglycerol (TAG), glucose and non-esterified fatty acids (NEFA)) following a mixed meal and flow-mediated dilation (FMD) analyses were evaluated at the start and after one year intervention. Postprandial glycemic and lipemic responses before the intervention as well as the differences in postprandial responses after one-year intervention were comparable between the Egg and the Con group. Fasting FMD was comparable between the groups before the intervention started and at the end of intervention. Additionally, the change in FMD following a mixed meal was comparable between the groups. To conclude, one-year consumption of a lutein-enriched egg yolk incorporated in a dairy drink has no effect on postprandial lipid and glucose metabolism or endothelial function.
Oxidation of protein-bound methionine in Photofrin-photodynamic therapy-treated human tumor cells explored by methionine-containing peptide enrichment and quantitative proteomics approach
Authors: Hsieh Ya-Ju , Chien Kun-Yi , Yang I-Fang , Lee I-Neng , Wu Chia-Chun , Huang Tung-Yung , Yu Jau-Song 
Published: April 2017

AbstractIn Photofrin-mediated photodynamic therapy (PDT), cell fate can be modulated by the subcellular location of Photofrin. PDT triggers oxidative damage to target cells, including the methionine (Met) oxidation of proteins. Here, we developed a new Met-containing peptide enrichment protocol combined with SILAC-based quantitative proteomics, and used this approach to explore the global Met oxidation changes of proteins in PDT-treated epidermoid carcinoma A431 cells preloaded with Photofrin at the plasma membrane, ER/Golgi, or ubiquitously. We identified 431 Met-peptides corresponding to 302 proteins that underwent severe oxidation upon PDT and observed overrepresentation of proteins related to the cell surface, plasma membrane, ER, Golgi, and endosome under all three conditions. The most frequently oxidized Met-peptide sequence was “QAMXXMM-E/G/M-S/G-A/G/F-XG”. We also identified several hundred potential Photofrin-binding proteins using affinity purification coupled with LC-MS/MS, and confirmed the bindings of EGFR and cathepsin D with Photofrin. The enzyme activities of both proteins were significantly reduced by Photofrin-PDT. Our results shed light on the global and site-specific changes in Met-peptide oxidation among cells undergoing Photofrin-PDT-mediated oxidative stress originating from distinct subcellular sites, and suggest numerous potential Photofrin-binding proteins. These findings provide new insight into the molecular targets through which Photofrin-PDT has diverse effects on target cells.
Global patterns of phosphatase activity in natural soils
Authors: Margalef O. , Sardans J. , Fernández-Martínez M. , Molowny-Horas R. , Janssens I. A. , Ciais P. , Goll D. , Richter A. , Obersteiner M. , Asensio D. , Peñuelas J. 
Published: April 2017

AbstractSoil phosphatase levels strongly control the biotic pathways of phosphorus (P), an essential element for life, which is often limiting in terrestrial ecosystems. We investigated the influence of climatic and soil traits on phosphatase activity in terrestrial systems using metadata analysis from published studies. This is the first analysis of global measurements of phosphatase in natural soils. Our results suggest that organic P (Porg), rather than available P, is the most important P fraction in predicting phosphatase activity. Structural equation modeling using soil total nitrogen (TN), mean annual precipitation, mean annual temperature, thermal amplitude and total soil carbon as most available predictor variables explained up to 50% of the spatial variance in phosphatase activity. In this analysis, Porgcould not be tested and among the rest of available variables, TN was the most important factor explaining the observed spatial gradients in phosphatase activity. On the other hand, phosphatase activity was also found to be associated with climatic conditions and soil type across different biomes worldwide. The close association among different predictors like Porg, TN and precipitation suggest that P recycling is driven by a broad scale pattern of ecosystem productivity capacity.
The importance of illumination in nest site choice and nest characteristics of cavity nesting birds
Authors: Podkowa Paweł , Surmacki Adrian 
Published: April 2017

AbstractLight has a significant impact on many aspects of avian biology, physiology and behaviour. An increasing number of studies show that illumination may positively influences birds’ offspring fitness by e.g. acceleration of embryo development, stimulation of skeleton growth or regulation of circadian rhythm. Because nest cavities have especially low illumination, suitable light levels may be especially important for species which nest there. We may therefore expect that birds breeding in relatively dim conditions should prefer brighter nest sites and/or evolve behavioral mechanisms to secure sufficient light levels in the nest. Using nest boxes with modified internal illumination, we experimentally tested whether light regime is a cue for nest site selection of secondary cavity-nesting species. Additionally, we investigated whether nest building strategies are tuned to internal illumination. Our results demonstrate that, nest boxes with elevated illumination were chosen twice as often as dark nest boxes. Moreover, birds built higher nests in dark nest boxes than birds in boxes with elevated illumination, which suggests a mechanism of compensating for low light conditions. Our results provide the first experimental support for the idea that nest site choice and nest building behaviour in cavity-nesting birds are influenced by ambient illumination.
Pulse Rate Measurement During Sleep Using Wearable Sensors, and its Correlation with the Menstrual Cycle Phases, A Prospective Observational Study
Authors: Shilaih Mohaned , Clerck Valérie de , Falco Lisa , Kübler Florian , Leeners Brigitte 
Published: April 2017

AbstractAn affordable, user-friendly fertility-monitoring tool remains an unmet need. We examine in this study the correlation between pulse rate (PR) and the menstrual phases using wrist-worn PR sensors. 91 healthy, non-pregnant women, between 22–42 years old, were recruited for a prospective-observational clinical trial. Participants measured PR during sleep using wrist-worn bracelets with photoplethysmographic sensors. Ovulation day was estimated with “Clearblue Digital-Ovulation-urine test”. Potential behavioral and nutritional confounders were collected daily. 274 ovulatory cycles were recorded from 91 eligible women, with a mean cycle length of 27.3 days (±2.7). We observed a significant increase in PR during the fertile window compared to the menstrual phase (2.1 beat-per-minute, p < 0.01). Moreover, PR during the mid-luteal phase was also significantly elevated compared to the fertile window (1.8 beat-per-minute, p < 0.01), and the menstrual phase (3.8 beat-per-minute, p < 0.01). PR increase in the ovulatory and mid-luteal phase was robust to adjustment for the collected confounders. There is a significant increase of the fertile-window PR (collected during sleep) compared to the menstrual phase. The aforementioned association was robust to the inter- and intra-person variability of menstrual-cycle length, behavioral, and nutritional profiles. Hence, PR monitoring using wearable sensors could be used as one parameter within a multi-parameter fertility awareness-based method.
Invisible body illusion modulates interpersonal space
Authors: D’Angelo Mariano , di Pellegrino Giuseppe , Frassinetti Francesca 
Published: April 2017

AbstractInterpersonal space (e.g., IPS) refers to the physical distance individuals maintain from others during social interactions, and into which intrusion by others can cause discomfort. Here, we asked whether the size of IPS is affected by manipulation of one’s own body representation. To address this issue, in Experiment 1, IPS was measured through a comfort-distance task, before and after eliciting the illusion of owning an invisible body. To rule out a general, nonspecific change in space perception consequent the illusion, we also assessed peripersonal space, e.g., PPS, the area around the body used to act on nearby objects, through a reaching-distance task. Results showed that the experience of invisibility induces a selective contraction of IPS, without affecting the perceived reaching space around the body. In Experiment 2, a tool-use manipulation produced the opposite dissociation, modifying the boundaries of PPS, but leaving IPS distance unaltered. Collectively, these findings support a close relationship between IPS and the conscious representation of the body external appearance, i.e. the body image, and suggest the existence of two functionally separate representations of the space immediately surrounding the body in humans, which may form the basis of distinct processes engaged for different behavioural contexts.
High throughput single cell counting in droplet-based microfluidics
Authors: Lu Heng , Caen Ouriel , Vrignon Jeremy , Zonta Eleonora , El Harrak Zakaria , Nizard Philippe , Baret Jean-Christophe , Taly Valérie 
Published: April 2017

AbstractDroplet-based microfluidics is extensively and increasingly used for high-throughput single-cell studies. However, the accuracy of the cell counting method directly impacts the robustness of such studies. We describe here a simple and precise method to accurately count a large number of adherent and non-adherent human cells as well as bacteria. Our microfluidic hemocytometer provides statistically relevant data on large populations of cells at a high-throughput, used to characterize cell encapsulation and cell viability during incubation in droplets.
Nanostructured laminar tungsten alloy with improved ductility by surface mechanical attrition treatment
Authors: Guo Hong-Yan , Xia Min , Chan Lap-Chung , Wang Kun , Zhang Xiao-Xin , Yan Qing-Zhi , He Man-Chao , Lu Jian , Ge Chang-Chun 
Published: April 2017

AbstractA nanostructured laminar W-La2O3 alloy (WL10) with improved ductility was prepared using a surface mechanical attrition treatment (SMAT). φ1.5 mm ZrO2 WL10 balls subjected to SMAT (called φ1.5 mm ZrO2 ball SMATed WL10) samples possess the best surface profile and excellent integrated mechanical properties (the ductile-brittle transition temperature (DBTT) value decreases by approximately 200 °C, and the bending strength decreases by 100 Mpa). A highly dense group of laminates was detected near the surface of the φ1.5 mm ZrO2 ball SMATed WL10 sample. The SMATed WL10 laminates were composed of a micro-grain layer, an ultrafine-grain layer and a nanosized-grain layer. The nanostructured laminar surface layer of the φ1.5 mm ZrO2 ball SMATed WL10 sample is approximately 1–2 μm. The top surface of the WL10 plates with and without the SMAT process possesses residual compressive stress of approximately −883 MPa and −241 MPa, respectively, in the y direction and −859 MPa and −854 MPa, respectively, in the x direction. The SMAT process could be a complementary method to further improve the toughness of tungsten-based materials.
Multi-frequency sound production and mixing in graphene
Authors: Heath M. S. , Horsell D. W. 
Published: April 2017

AbstractThe ability to generate, amplify, mix and modulate sound in one simple electronic device would open up a new world in acoustics. Here we show how to build such a device. It generates sound thermoacoustically by Joule heating in graphene. A rich sonic palette is created by controlling the composition and flow of the electric current through the graphene. This includes frequency mixing (heterodyning), which results exclusively from the Joule mechanism. It also includes shaping of the sound spectrum by a dc current and modulating its amplitude with a transistor gate. We show that particular sounds are indicators of nonlinearity and can be used to quantify nonlinear contributions to the conduction. From our work, we expect to see novel uses of acoustics in metrology, sensing and signal processing. Together with the optical qualities of graphene, its acoustic capabilities should inspire the development of the first combined audio-visual nanotechnologies.
Transcriptional landscape of epithelial and immune cell populations revealed through FACS-seq of healthy human skin
Authors: Ahn Richard S. , Taravati Keyon , Lai Kevin , Lee Kristina M. , Nititham Joanne , Gupta Rashmi , Chang David S. , Arron Sarah T. , Rosenblum Michael , Liao Wilson 
Published: April 2017

AbstractHuman skin consists of multiple cell types, including epithelial, immune, and stromal cells. Transcriptomic analyses have previously been performed from bulk skin samples or from epithelial and immune cells expanded in cell culture. However, transcriptomic analysis of bulk skin tends to drown out expression signals from relatively rare cells while cell culture methods may significantly alter cellular phenotypes and gene expression profiles. To identify distinct transcriptomic profiles of multiple cell populations without substantially altering cell phenotypes, we employed a fluorescence activated cell sorting method to isolate keratinocytes, dendritic cells, CD4+ T effector cells, and CD8+ T effector cells from healthy skin samples, followed by RNA-seq of each cell population. Principal components analysis revealed distinct clustering of cell types across samples, while differential expression and coexpression network analyses revealed transcriptional profiles of individual cell populations distinct from bulk skin, most strikingly in the least abundant CD8+ T effector population. Our work provides a high resolution view of cutaneous cellular gene expression and suggests that transcriptomic profiling of bulk skin may inadequately capture the contribution of less abundant cell types.
How doctors diagnose diseases and prescribe treatments: an fMRI study of diagnostic salience
Authors: Melo Marcio , Gusso Gustavo D. F. , Levites Marcelo , Amaro Edson , Massad Eduardo , Lotufo Paulo A. , Zeidman Peter , Price Cathy J. , Friston Karl J. 
Published: April 2017

AbstractUnderstanding the brain mechanisms involved in diagnostic reasoning may contribute to the development of methods that reduce errors in medical practice. In this study we identified similar brain systems for diagnosing diseases, prescribing treatments, and naming animals and objects using written information as stimuli. Employing time resolved modeling of blood oxygen level dependent (BOLD) responses enabled time resolved (400 milliseconds epochs) analyses. With this approach it was possible to study neural processes during successive stages of decision making. Our results showed that highly diagnostic information, reducing uncertainty about the diagnosis, decreased monitoring activity in the frontoparietal attentional network and may contribute to premature diagnostic closure, an important cause of diagnostic errors. We observed an unexpected and remarkable switch of BOLD activity within a right lateralized set of brain regions related to awareness and auditory monitoring at the point of responding. We propose that this neurophysiological response is the neural substrate of awareness of one’s own (verbal) response. Our results highlight the intimate relation between attentional mechanisms, uncertainty, and decision making and may assist the advance of approaches to prevent premature diagnostic closure.
Development of structural colour in leaf beetles
Authors: Onelli Olimpia D. , Kamp Thomas van de , Skepper Jeremy N. , Powell Janet , Rolo Tomy dos Santos , Baumbach Tilo , Vignolini Silvia 
Published: April 2017

AbstractStructural colours in living organisms have been observed and analysed in a large number of species, however the study of how the micro- and nano-scopic natural structures responsible of such colourations develop has been largely ignored. Understanding the interplay between chemical composition, structural morphology on multiple length scales, and mechanical constraints requires a range of investigation tools able to capture the different aspects of natural hierarchical architectures. Here, we report a developmental study of the most widespread strategy for structural colouration in nature: the cuticular multilayer. In particular, we focus on the exoskeletal growth of the dock leaf beetle Gastrophysa viridula, capturing all aspects of its formation: the macroscopic growth is tracked via synchrotron microtomography, while the submicron features are revealed by electron microscopy and light spectroscopy combined with numerical modelling. In particular, we observe that the two main factors driving the formation of the colour-producing multilayers are the polymerization of melanin during the ecdysis and the change in the layer spacing during the sclerotisation of the cuticle. Our understanding of the exoskeleton formation provides a unique insight into the different processes involved during metamorphosis.