bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ex Vivo Tracer Efficacy in Optical Imaging of Staphylococcus Aureus Nuclease Activity
Authors: Rosman Colin W. K. , Romero Pastrana Francisco , Buist Girbe , Heuker Marjolein , van Oosten Marleen , McNamara James O. , van Dam Gooitzen M. , van Dijl Jan Maarten 
Published: January 2018

AbstractThe key to effective treatment of bacterial infections is a swift and reliable diagnosis. Current clinical standards of bacterial diagnosis are slow and laborious. There are several anatomical imaging modalities that can detect inflammation, but none can distinguish between bacterial and sterile inflammation. Novel tracers such as smart activatable fluorescent probes represent a promising development that allow fast and specific testing without the use of ionizing radiation. Previously, a smart activatable probe was developed that is a substrate for the micrococcal nuclease as produced by Staphylococcus aureus. In the present study, the function of this probe was validated. Practical applicability in terms of sensitivity was assessed by incubation of the probe with 26 clinical S. aureus isolates, and probe specificity was verified by incubation with 30 clinical isolates and laboratory strains of various bacterial pathogens. The results show that the nuclease-specific probe was activated by all tested S. aureus isolates and laboratory strains with a threshold of ~106–107 cells/mL. The probe was also activated by certain opportunistic staphylococci. We therefore propose that the studied nuclease probe represents a significant step forward to address the need for a rapid, practical, and precise method to detect infections caused by S. aureus.
Design of novel materials for additive manufacturing - Isotropic microstructure and high defect tolerance
Authors: Günther J. , Brenne F. , Droste M. , Wendler M. , Volkova O. , Biermann H. , Niendorf T. 
Published: January 2018

AbstractElectron Beam Melting (EBM) is a powder-bed additive manufacturing technology enabling the production of complex metallic parts with generally good mechanical properties. However, the performance of powder-bed based additively manufactured materials is governed by multiple factors that are difficult to control. Alloys that solidify in cubic crystal structures are usually affected by strong anisotropy due to the formation of columnar grains of preferred orientation. Moreover, processing induced defects and porosity detrimentally influence static and cyclic mechanical properties. The current study presents results on processing of a metastable austenitic CrMnNi steel by EBM. Due to multiple phase transformations induced by intrinsic heat-treatment in the layer-wise EBM process the material develops a fine-grained microstructure almost without a preferred crystallographic grain orientation. The deformation-induced phase transformation yields high damage tolerance and, thus, excellent mechanical properties less sensitive to process-induced inhomogeneities. Various scan strategies were applied to evaluate the width of an appropriate process window in terms of microstructure evolution, porosity and change of chemical composition.
Nitrogen cycling during secondary succession in Atlantic Forest of Bahia, Brazil
Authors: Winbourne Joy B. , Feng Aida , Reynolds Lovinia , Piotto Daniel , Hastings Meredith G. , Porder Stephen 
Published: January 2018

AbstractCarbon accumulation in tropical secondary forests may be limited in part by nitrogen (N) availability, but changes in N during tropical forest succession have rarely been quantified. We explored N cycle dynamics across a chronosequence of secondary tropical forests in the Mata Atlântica of Bahia, Brazil in order to understand how quickly the N cycle recuperates. We hypothesized that N fixation would decline over the course of succession as N availability and N gaseous losses increased. We measured N fixation, KCl-extractable N, net mineralization and nitrification, resin-strip sorbed N, gaseous N emissions and the soil δ15N in stands that were 20, 35, 50, and > 50 years old. Contrary to our initial hypothesis, we found no significant differences between stand ages in any measured variable. Our findings suggest that secondary forests in this region of the Atlantic forest reached pre-disturbance N cycling dynamics after just 20 years of succession. This result contrasts with previous study in the Amazon, where the N cycle recovered slowly after abandonment from pasture reaching pre-disturbance N cycling levels after ~50 years of succession. Our results suggest the pace of the N cycle, and perhaps tropical secondary forest, recovery, may vary regionally.
Optimized Spintronic Terahertz Emitters Based on Epitaxial Grown Fe/Pt Layer Structures
Authors: Torosyan Garik , Keller Sascha , Scheuer Laura , Beigang René , Papaioannou Evangelos Th. 
Published: January 2018

AbstractWe report on generation of pulsed broadband terahertz radiation utilizing the inverse spin hall effect in Fe/Pt bilayers on MgO and sapphire substrates. The emitter was optimized with respect to layer thickness, growth parameters, substrates and geometrical arrangement. The experimentally determined optimum layer thicknesses were in qualitative agreement with simulations of the spin current induced in the ferromagnetic layer. Our model takes into account generation of spin polarization, spin diffusion and accumulation in Fe and Pt and electrical as well as optical properties of the bilayer samples. Using the device in a counterintuitive orientation a Si lens was attached to increase the collection efficiency of the emitter. The optimized emitter provided a bandwidth of up to 8 THz which was mainly limited by the low-temperature-grown GaAs (LT-GaAS) photoconductive antenna used as detector and the pulse length of the pump laser. The THz pulse length was as short as 220 fs for a sub 100 fs pulse length of the 800 nm pump laser. Average pump powers as low as 25 mW (at a repetition rate of 75 MHz) have been used for terahertz generation. This and the general performance make the spintronic terahertz emitter compatible with established emitters based on optical rectification in nonlinear crystals.
The nasal microbiome mirrors and potentially shapes olfactory function
Authors: Koskinen Kaisa , Reichert Johanna L. , Hoier Stefan , Schachenreiter Jochen , Duller Stefanie , Moissl-Eichinger Christine , Schöpf Veronika 
Published: January 2018

AbstractOlfactory function is a key sense for human well-being and health, with olfactory dysfunction having been linked to serious diseases. As the microbiome is involved in normal olfactory epithelium development, we explored the relationship between olfactory function (odor threshold, discrimination, identification) and nasal microbiome in 67 healthy volunteers. Twenty-eight subjects were found to have normal olfactory function, 29 had a particularly good sense of smell (“good normosmics”) and 10 were hyposmic. Microbial community composition differed significantly between the three olfactory groups. In particular, butyric acid-producing microorganisms were found to be associated with impaired olfactory function. We describe the first insights of the potential interplay between the olfactory epithelium microbial community and olfactory function, and suggest that the microbiome composition is able to mirror and potentially shape olfactory function by producing strong odor compounds.
Hydroclimatic conditions trigger record harmful algal bloom in western Patagonia (summer 2016)
Authors: León-Muñoz Jorge , Urbina Mauricio A. , Garreaud René , Iriarte José Luis 
Published: January 2018

AbstractA harmful algal bloom (HAB) of the raphidophyta alga Pseudochattonella cf. verruculosa during the 2016 austral summer (February-March) killed nearly 12% of the Chilean salmon production, causing the worst mass mortality of fish and shellfish ever recorded in the coastal waters of western Patagonia. The HAB coincided with a strong El Niño event and the positive phase of the Southern Annular Mode that altered the atmospheric circulation in southern South America and the adjacent Pacific Ocean. This led to very dry conditions and higher than normal solar radiation reaching the surface. Using time series of atmospheric, hydrologic and oceanographic data we show here that an increase in surface water temperature and reduced freshwater input resulted in a weakening of the vertical stratification in the fjords and sounds of this region. This allowed the advection of more saline and nutrient-rich waters, ultimately resulting in an active harmful algal bloom in coastal southern Chile.
Effects of soil water and heat relationship under various snow cover during freezing-thawing periods in Songnen Plain, China
Authors: Fu Qiang , Hou Renjie , Li Tianxiao , Jiang Ruiqi , Yan Peiru , Ma Ziao , Zhou Zhaoqiang 
Published: January 2018

AbstractIn this study, the spatial variations of soil water and heat under bare land (BL), natural snow (NS), compacted snow (CS) and thick snow (TS) treatments were analyzed. The relationship curve between soil temperature and water content conforms to the exponential filtering model, by means of the functional form of the model, it was defined as soil water and heat relation function model. On this basis, soil water and heat function models of 10, 20, 40, 60, 100, and 140 cm were established. Finally, a spatial variation law of the relationship effect was described based on analysising of the differences between the predicted and measured results. During freezing period, the effects of external factors on soil were hindered by snow cover. As the snow increased, the accuracy of the function model gradually improved. During melting period, infiltration by snowmelt affected the relationship between the soil temperature and moisture. With the increasing of snow, the accuracy of the function models gradually decreased. The relationship effects of soil water and heat increased with increasing depth within the frozen zone. In contrast, below the frozen layer, the relationship of soil water and heat was weaker, and the function models were less accurate.
Sperm-borne phospholipase C zeta-1 ensures monospermic fertilization in mice
Authors: Nozawa Kaori , Satouh Yuhkoh , Fujimoto Takao , Oji Asami , Ikawa Masahito 
Published: January 2018

AbstractSperm entry in mammalian oocytes triggers intracellular Ca2+ oscillations that initiate resumption of the meiotic cell cycle and subsequent activations. Here, we show that phospholipase C zeta 1 (PLCζ1) is the long-sought sperm-borne oocyte activation factor (SOAF). Plcz1 gene knockout (KO) mouse spermatozoa fail to induce Ca2+ changes in intracytoplasmic sperm injection (ICSI). In contrast to ICSI, Plcz1 KO spermatozoa induced atypical patterns of Ca2+ changes in normal fertilizations, and most of the fertilized oocytes ceased development at the 1–2-cell stage because of oocyte activation failure or polyspermy. We further discovered that both zona pellucida block to polyspermy (ZPBP) and plasma membrane block to polyspermy (PMBP) were delayed in oocytes fertilized with Plcz1 KO spermatozoa. With the observation that polyspermy is rare in astacin-like metalloendopeptidase (Astl) KO female oocytes that lack ZPBP, we conclude that PMPB plays more critical role than ZPBP in vivo. Finally, we obtained healthy pups from male mice carrying human infertile PLCZ1 mutation by single sperm ICSI supplemented with Plcz1 mRNA injection. These results suggest that mammalian spermatozoa have a primitive oocyte activation mechanism and that PLCζ1 is a SOAF that ensures oocyte activation steps for monospermic fertilization in mammals.
Identification of disulfiram as a secretase-modulating compound with beneficial effects on Alzheimer’s disease hallmarks
Authors: Reinhardt Sven , Stoye Nicolai , Luderer Mathias , Kiefer Falk , Schmitt Ulrich , Lieb Klaus , Endres Kristina 
Published: January 2018

AbstractADAM10 is a metalloproteinase acting on the amyloid precursor protein (APP) as an alpha-secretase in neurons. Its enzymatic activity results in secretion of a neuroprotective APP cleavage product (sAPP-alpha) and prevents formation of the amyloidogenic A-beta peptides, major hallmarks of Alzheimer’s disease (AD). Elevated ADAM10 levels appeared to contribute to attenuation of A-beta-plaque formation and learning and memory deficits in AD mouse models. Therefore, it has been assumed that ADAM10 might represent a valuable target in AD therapy. Here we screened a FDA-approved drug library and identified disulfiram as a novel ADAM10 gene expression enhancer. Disulfiram increased ADAM10 production as well as sAPP-alpha in SH-SY5Y human neuronal cells and additionally prevented A-beta aggregation in an in vitro assay in a dose-dependent fashion. In addition, acute disulfiram treatment of Alzheimer model mice induced ADAM10 expression in peripheral blood cells, reduced plaque-burden in the dentate gyrus and ameliorated behavioral deficits. Alcohol-dependent patients are subjected to disulfiram-treatment to discourage alcohol-consumption. In such patients, enhancement of ADAM10 by disulfiram-treatment was demonstrated in peripheral blood cells. Our data suggest that disulfiram could be repurposed as an ADAM10 enhancer and AD therapeutic. However, efficacy and safety has to be analyzed in Alzheimer patients in the future.
Land-surface initialisation improves seasonal climate prediction skill for maize yield forecast
Authors: Ceglar Andrej , Toreti Andrea , Prodhomme Chloe , Zampieri Matteo , Turco Marco , Doblas-Reyes Francisco J. 
Published: January 2018

AbstractSeasonal crop yield forecasting represents an important source of information to maintain market stability, minimise socio-economic impacts of crop losses and guarantee humanitarian food assistance, while it fosters the use of climate information favouring adaptation strategies. As climate variability and extremes have significant influence on agricultural production, the early prediction of severe weather events and unfavourable conditions can contribute to the mitigation of adverse effects. Seasonal climate forecasts provide additional value for agricultural applications in several regions of the world. However, they currently play a very limited role in supporting agricultural decisions in Europe, mainly due to the poor skill of relevant surface variables. Here we show how a combined stress index (CSI), considering both drought and heat stress in summer, can predict maize yield in Europe and how land-surface initialised seasonal climate forecasts can be used to predict it. The CSI explains on average nearly 53% of the inter-annual maize yield variability under observed climate conditions and shows how concurrent heat stress and drought events have influenced recent yield anomalies. Seasonal climate forecast initialised with realistic land-surface achieves better (and marginally useful) skill in predicting the CSI than with climatological land-surface initialisation in south-eastern Europe, part of central Europe, France and Italy.
Impaired Functional Criticality of Human Brain during Alzheimer’s Disease Progression
Authors: Jiang Lili , Sui Danyang , Qiao Kaini , Dong Hao-Ming , Chen Luonan , Han Ying 
Published: January 2018

AbstractThe progression of Alzheimer’s Disease (AD) has been proposed to comprise three stages, subjective cognitive decline (SCD), mild cognitive impairment (MCI), and AD. Was brain dynamics across the three stages smooth? Was there a critical transition? How could we characterize and study functional criticality of human brain? Based on dynamical characteristics of critical transition from nonlinear dynamics, we proposed a vertex-wise Index of Functional Criticality (vIFC) of fMRI time series in this study. Using 42 SCD, 67 amnestic MCI (aMCI), 34 AD patients as well as their age-, sex-, years of education-matched 54 NC, our new method vIFC successfully detected significant patient-normal differences for SCD and aMCI, as well as significant negative correlates of vIFC in the right middle temporal gyrus with total scores of Montreal Cognitive Assessment (MoCA) in SCD. In comparison, standard deviation of fMRI time series only detected significant differences between AD patients and normal controls. As an index of functional criticality of human brain derived from nonlinear dynamics, vIFC could serve as a sensitive neuroimaging marker for future studies; considering much more vIFC impairments in aMCI compared to SCD and AD, our study indicated aMCI as a critical stage across AD progression.
Butyrylcholinesterase and Acetylcholinesterase polymorphisms in Multiple Sclerosis patients: implication in peripheral inflammation
Authors: Reale Marcella , Costantini Erica , Di Nicola Marta , D’Angelo Chiara , Franchi Sara , D’Aurora Marco , Di Bari Maria , Orlando Viviana , Galizia Sabrina , Ruggieri Serena , Stuppia Liborio , Gasperini Claudio , Tata Ada Maria , Gatta Valentina 
Published: January 2018

AbstractMultiple Sclerosis (MS) is an autoimmune disease, having not fully understood aetiology, and both genetic and environmental factors contribute to the pathogenesis of the disease. The cholinergic system has been indicated as a mediator of neuro-immune interactions, as well as an internal regulator of immune responses. The aim of the present research was to assess the associations between BChE and AChE genetic variations and serum cholinergic and inflammatory profiles in 102 Relapsing Remitting-MS patients and 117 healthy controls. An increased frequency of the BChE K-allele in MS patients as compared to controls was found. In addition, data showed that patients had higher BChE enzymatic activity, which is increased by the presence of the polymorphic allele and reduced amounts of circulating ACh. AChE polymorphism was significantly associated to reduced activity in both patients and controls. We propose that serum BChE and AChE activity may be used as a secondary markers to assess the role of non-neuronal cholinergic system in regulating peripheral inflammation via ACh regulation. This pilot study shed light on the role of the non-neuronal cholinergic system in immune cells to better understand MS pathogenesis. The cross-talk between the periphery and the CNS could have a new undescribed crucial role for MS, regarded as a systemic disease.
Reversible 2D Supramolecular Organic Frameworks encompassing Viologen Cation Radicals and CB[8]
Authors: Madasamy Kanagaraj , Shanmugam Vellaiah Maruthiah , Velayutham David , Kathiresan Murugavel 
Published: January 2018

AbstractReversible 2D supramolecular organic frameworks encompassing branched viologen architectures and cucurbit[8]uril (CB[8]) were constructed and investigated. UV-vis investigation clearly indicates the formation and intermolecular dimerization of monocation radicals and their encapsulation into the hydrophobic CB[8] cavity which is further complemented by EPR (electron paramagnetic resonance) spectroscopy. Particle size measurements by dynamic light scattering method showed particle sizes in the range of several µm indicating larger aggregates. Zeta potential measurements suggested the instability of these particles and their tendency to form aggregates. TEM (transmission electron microscope) analysis further revealed the formation of supramolecular polymer (monocation radical with cucurbit[8]uril) whose diameter were in the range of several µm as indicated by DLS measurements; however the oxidized form, i.e., the viologen dication with cucurbit[8]uril showed dotted spots in the range of sub nanometer level. The internal periodicities of the supramolecular polymers were analyzed by SAXs (small angle X-ray scattering) measurements. Additionally, we have demonstrated that these supramolecular organic frameworks can be depolymerized by oxidation in air and again can be polymerized (intermolecular radical dimerization) by reduction under inert atmosphere demonstrating that these systems will be of broad interest.
Tunable band-gap structure and gap solitons in the generalized Gross-Pitaevskii equation with a periodic potential
Authors: Huang Changming , Dong Liangwei 
Published: January 2018

AbstractThe tunable band-gap structure is fundamentally important in the dynamics of both linear and nonlinear modes trapped in a lattice because Bloch modes can only exist in the bands of the periodic system and nonlinear modes associating with them are usually confined to the gaps. We reveal that when a momentum operator is introduced into the Gross-Pitaevskii equation (GPE), the bandgap spectra of the periodic system can be shifted upward parabolically by the growth of the constant momentum coefficient. During this process, the band edges become asymmetric, in sharp contrast to the standard GPE with an external periodic potential. Extended complex Bloch modes with asymmetric profiles can be derived by applying a phase transformation to the symmetric profiles. We find that the inherent parity-time symmetry of the complex system is never broken with increasing momentum coefficient. Under repulsive interactions, solitons with different numbers of peaks bifurcating from the band edges are found in finite gaps. We also address the existence of embedded solitons in the generalized two-dimensional GPE. Linear stability analysis corroborated by direct evolution simulations demonstrates that multi-peaked solitons are almost completely stable in their entire existence domains.
Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa
Authors: Eimanifar Amin , Kimball Rebecca T. , Braun Edward L. , Ellis James D. 
Published: January 2018

AbstractApis mellifera capensisEschscholtz andA.m.scutellataLepeletier are subspecies of western honey bees that are indigenous to the Republic of South Africa (RSA). Both subspecies have invasive potential and are organisms of concern for areas outside their native range, though they are important bees to beekeepers, agriculture, and the environment where they are native. The aim of the present study was to examine genetic differentiation among these subspecies and estimate their phylogenetic relationships using complete mitochondrial genomes sequences. We used 25 individuals that were either assigned to one of the subspecies or designated hybrids using morphometric analyses. Phylogenetic analyses of mitogenome sequences by maximum likelihood (ML) and Bayesian inference identified a monophyletic RSA clade, subdivided into two clades. A haplotype network was consistent with the phylogenetic trees. However, members of both subspecies occurred in both clades, indicating thatA.m.capensisandA.m.scutellataare neither reciprocally monophyletic nor do they exhibit paraphyly with one subspecies nested within the other subspecies. Furthermore, no mitogenomic features were diagnostic to either subspecies. All bees analyzed from the RSA expressed a substantial level of haplotype diversity (most samples had unique haplotypes) but limited nucleotide diversity. The number of variable codons across protein-coding genes (PCGs) differed among loci, withCO3exhibiting the most variation andATP6the least.