bluuebunny/crossref_metadata_2025_split huggingface dataset:
Structure-driven CO2 selectivity and gas capacity of ionic clathrate hydrates
Authors: Hashimoto Hidenori , Yamaguchi Tsutomu , Ozeki Hiroyuki , Muromachi Sanehiro 
Published: December 2017

AbstractIonic clathrate hydrates can selectively capture small gas molecules such as CO2, N2, CH4 and H2. We investigated CO2 + N2 mixed gas separation properties of ionic clathrate hydrates formed with tetra-n-butylammonium bromide (TBAB), tetra-n-butylammonium chloride (TBAC), tetra-n-butylphosphonium bromide (TBPB) and tetra-n-butylphosphonium chloride (TBPC). The results showed that CO2 selectivity of TBAC hydrates was remarkably higher than those of the other hydrates despite less gas capacity of TBAC hydrates. The TBAB hydrates also showed irregularly high CO2 selectivity at a low pressure. X-ray diffraction and Raman spectroscopic analyses clarified that TBAC stably formed the tetragonal hydrate structure, and TBPB and TBPC formed the orthorhombic hydrate structure. The TBAB hydrates showed polymorphic phases which may consist of the both orthorhombic and tetragonal hydrate structures. These results showed that the tetragonal hydrate captured CO2 more efficiently than the orthorhombic hydrate, while the orthorhombic hydrate has the largest gas capacity among the basic four structures of ionic clathrate hydrates. The present study suggests new potential for improving gas capacity and selectivity of ionic clathrate hydrates by choosing suitable ionic guest substances for guest gas components.
Hypoxia-inducible factor prolyl-4-hydroxylase-1 is a convergent point in the reciprocal negative regulation of NF-κB and p53 signaling pathways
Authors: Ullah Karim , Rosendahl Ann-Helen , Izzi Valerio , Bergmann Ulrich , Pihlajaniemi Taina , Mäki Joni M. , Myllyharju Johanna 
Published: December 2017

AbstractHypoxia-inducible factor 1α (HIF1α) induces the expression of several hundred genes in hypoxia aiming at restoration of oxygen homeostasis. HIF prolyl-4-hydroxylases (HIF-P4Hs) regulate the stability of HIF1α in an oxygen-dependent manner. Hypoxia is a common feature in inflammation and cancer and the HIF pathway is closely linked with the inflammatory NF-κB and tumor suppressor p53 pathways. Here we show that genetic inactivation or chemical inhibition of HIF-P4H-1 leads to downregulation of proinflammatory genes, while proapoptotic genes are upregulated. HIF-P4H-1 inactivation reduces the inflammatory response under LPS stimulusin vitroand in an acute skin inflammation modelin vivo. Furthermore, HIF-P4H-1 inactivation increases p53 activity and stability and hydroxylation of proline 142 in p53 has an important role in this regulation. Altogether, our data suggest that HIF-P4H-1 inhibition may be a promising therapeutic candidate for inflammatory diseases and cancer, enhancing the reciprocal negative regulation of the NF-κB and p53 pathways.
Structural Dynamics of the MscL C-terminal Domain
Authors: Bavi Navid , Martinac Adam D. , Cortes D. Marien , Bavi Omid , Ridone Pietro , Nomura Takeshi , Hill Adam P. , Martinac Boris , Perozo Eduardo 
Published: December 2017

AbstractThe large conductance mechanosensitive channel (MscL), acts as an osmoprotective emergency valve in bacteria by opening a large, water-filled pore in response to changes in membrane tension. In its closed configuration, the last 36 residues at the C-terminus form a bundle of five α-helices co-linear with the five-fold axis of symmetry. Here, we examined the structural dynamics of the C-terminus of EcMscL using site-directed spin labelling electron paramagnetic resonance (SDSL EPR) spectroscopy. These experiments were complemented with computational modelling including molecular dynamics (MD) simulations and finite element (FE) modelling. Our results show that under physiological conditions, the C-terminus is indeed an α-helical bundle, located near the five-fold symmetry axis of the molecule. Both experiments and computational modelling demonstrate that only the top part of the C-terminal domain (from the residue A110 to E118) dissociates during the channel gating, while the rest of the C-terminus stays assembled. This result is consistent with the view that the C-terminus functions as a molecular sieve and stabilizer of the oligomeric MscL structure as previously suggested.
Structural abnormalities in islets from very young children with cystic fibrosis may contribute to cystic fibrosis-related diabetes
Authors: Bogdani Marika , Blackman Scott M. , Ridaura Cecilia , Bellocq Jean-Pierre , Powers Alvin C. , Aguilar-Bryan Lydia 
Published: December 2017

AbstractCystic fibrosis (CF)-related diabetes (CFRD) is thought to result from beta-cell injury due in part to pancreas exocrine damage and lipofibrosis. CFRD pancreata exhibit reduced islet density and altered cellular composition. To investigate a possible etiology, we tested the hypothesis that such changes are present in CF pancreata before the development of lipofibrosis. We evaluated pancreas and islet morphology in tissues from very young CF children (<4 years of age), and adult patients with CF and CFRD. The relative number of beta-cells in young CF tissues was reduced by 50% or more when compared to age-matched controls. Furthermore, young CF tissues displayed significantly smaller insulin-positive areas, lower proportion of beta-cells positive for the proliferation marker Ki67 or the ductal marker CK19 vs. control subjects, and islet inflammatory cell infiltrates, independently of the severity of the exocrine lesion and in the absence of amyloid deposits. CFRD pancreata exhibited greater islet injury with further reduction in islet density, decreased relative beta-cell number, and presence of amyloid deposits. Together, these results strongly suggest that an early deficiency in beta-cell number in infants with CF may contribute to the development of glucose intolerance in the CF pediatric population, and to CFRD, later in life.
A Novel EEG Based Spectral Analysis of Persistent Brain Function Alteration in Athletes with Concussion History
Authors: Munia Tamanna T. K. , Haider Ali , Schneider Charles , Romanick Mark , Fazel-Rezai Reza 
Published: December 2017

AbstractThe neurocognitive sequelae of a sport-related concussion and its management are poorly defined. Detecting deficits are vital in making a decision about the treatment plan as it can persist one year or more following a brain injury. The reliability of traditional cognitive assessment tools is debatable, and thus attention has turned to assessments based on electroencephalogram (EEG) to evaluate subtle post-concussive alterations. In this study, we calculated neurocognitive deficits combining EEG analysis with three standard post-concussive assessment tools. Data were collected for all testing modalities from 21 adolescent athletes (seven concussive and fourteen healthy) in three different trials. For EEG assessment, along with linear frequency-based features, we introduced a set of time-frequency (Hjorth Parameters) and nonlinear features (approximate entropy and Hurst exponent) for the first time to explore post-concussive deficits. Besides traditional frequency-band analysis, we also presented a new individual frequency-based approach for EEG assessment. While EEG analysis exhibited significant discrepancies between the groups, none of the cognitive assessment resulted in significant deficits. Therefore, the evidence from the study highlights that our proposed EEG analysis and markers are more efficient at deciphering post-concussion residual neurocognitive deficits and thus has a potential clinical utility of proper concussion assessment and management.
Indium phosphide metasurface with enhanced nonlinear absorption
Authors: Slovick Brian , Zipp Lucas , Krishnamurthy Srini 
Published: December 2017

AbstractWe solve the nonlinear Maxwell equations in an InP-based dielectric metamaterial, considering both two-photon absorption and photo-induced free-carrier absorption. We obtain the intensity-dependent reflection, absorption, and effective permittivity and permeability of the metamaterial. Our results show that nonlinear absorption dampens both the electric and magnetic Mie resonance, although the magnetic resonance is more affected because it occurs at longer wavelengths where the free-carrier absorption cross section is larger. Owing to field concentration in the metamaterial at resonance, the threshold intensity for nonlinear absorption is reduced by a factor of about 30 compared to a homogeneous layer of the same thickness. Our results have implications on the use of dielectric metamaterials for nonlinear applications such as higher harmonic generation, optical limiting, and ultrafast modulation.
Long-term maintenance of peripheral blood derived human NK cells in a novel human IL-15- transgenic NOG mouse
Authors: Katano Ikumi , Nishime Chiyoko , Ito Ryoji , Kamisako Tsutomu , Mizusawa Takuma , Ka Yuyo , Ogura Tomoyuki , Suemizu Hiroshi , Kawakami Yutaka , Ito Mamoru , Takahashi Takeshi 
Published: December 2017

AbstractWe generated a novel mouse strain expressing transgenic human interleukin-15 (IL-15) using the severe immunodeficient NOD/Shi-scid-IL-2Rγnull(NOG) mouse genetic background (NOG-IL-15 Tg). Human natural killer (NK) cells, purified from the peripheral blood (hu-PB-NK) of normal healthy donors, proliferated when transferred into NOG-IL-15 Tg mice. In addition, the cell number increased, and the hu-PB-NK cells persisted for 3 months without signs of xenogeneic graft versus host diseases (xGVHD). Thesein vivo-expanded hu-PB-NK cells maintained the original expression patterns of various surface antigens, including NK receptors and killer cell immunoglobulin-like receptor (KIR) molecules. They also contained significant amounts of granzyme A and perforin. Inoculation of K562 leukemia cells into hu-PB-NK-transplanted NOG-IL-15 Tg mice resulted in significant suppression of tumor growth compared with non-transplanted mice. Furthermore, NOG-IL-15 Tg mice allowed for engraftment ofin vitro-expanded NK cells prepared for clinical cell therapy. These cells exerted antibody-dependent cell-mediated cytotoxicity (ADCC) on Her2-positive gastric cancer cells in the presence of therapeutic anti-Her2 antibody, and subsequently suppressed tumor growth. Our results collectively suggest that the NOG-IL-15 Tg mice are a useful model for studying human NK biology and evaluating human NK cell-mediatedin vivocytotoxicity.
Elemental preference and atomic scale site recognition in a Co-Al-W-base superalloy
Authors: Chen Yanhui , Xue Fei , Mao Shengcheng , Long Haibo , Zhang Bin , Deng Qingsong , Chen Bin , Liu Yinong , Maguire Pierce , Zhang Hongzhou , Han Xiaodong , Feng Qiang 
Published: December 2017

AbstractUsing state-of-the-art atomic scale super energy dispersive X-ray spectroscopy and high angle annular dark field imaging this study reveals the elemental partitioning preference between the γ′ and γ phases in a Co-Al-W-Ti-Ta superalloy and the site preference of its alloying elements in the ordered L12 γ′ phase. A semi-quantitative analysis of atomic column compositions in the ordered L12 γ′ structure is provided. Co atoms were found to occupy the {1/2, 1/2, 0} face-center positions whereas Al, W, Ti and Ta atoms prefer to occupy the {0, 0, 0} cube corner positions in the L12 γ phase. These findings agree well with predictions from first principles simulations in the literature.
Enhanced electronic-transport modulation in single-crystalline VO2 nanowire-based solid-state field-effect transistors
Authors: Wei Tingting , Kanki Teruo , Chikanari Masashi , Uemura Takafumi , Sekitani Tsuyoshi , Tanaka Hidekazu 
Published: December 2017

AbstractField-effect transistors using correlated electron materials with an electronic phase transition pave a new avenue to realize steep slope switching, to overcome device size limitations and to investigate fundamental science. Here, we present a new finding in gate-bias-induced electronic transport switching in a correlated electron material, i.e., a VO2 nanowire channel through a hybrid gate, which showed an enhancement in the resistive modulation efficiency accompanied by expansion of metallic nano-domains in an insulating matrix by applying gate biases near the metal-insulator transition temperature. Our results offer an understanding of the innate ability of coexistence state of metallic and insulating domains in correlated materials through carrier tuning and serve as a valuable reference for further research into the development of correlated materials and their devices.
Embryonic lethality and defective male germ cell development in mice lacking UTF1
Authors: Kasowitz Seth D. , Luo Mengcheng , Ma Jun , Leu N. Adrian , Wang P. Jeremy 
Published: December 2017

AbstractThe germ cell lineage is specified early in embryogenesis and undergoes complex developmental programs to generate gametes. Here, we conducted genetic studies to investigate the role ofUtf1(Undifferentiated embryonic cell transcription factor 1) in mouse germ cell development.Utf1is expressed in pluripotent embryonic stem (ES) cells and regulates ES cell differentiation. In a proteomics screen, we identified UTF1 among 38 proteins including DNMT3L and DND1 that associate with chromatin in embryonic testes. We find that UTF1 is expressed in embryonic and newborn gonocytes and in a subset of early spermatogonia. Ubiquitous inactivation ofUtf1causes embryonic lethality in mice with a hybrid genetic background. Male mice with a germline-specific deletion ofUtf1resulting fromPrdm1-Cre mediated recombination are born with significantly fewer gonocytes and exhibit defective spermatogenesis and reduced sperm count as young adults. These defects are ameliorated in older animals. These results demonstrate that UTF1 is required for embryonic development and regulates male germ cell development.
Impact of self-esteem and sex on stress reactions
Authors: Kogler Lydia , Seidel Eva-Maria , Metzler Hannah , Thaler Hanna , Boubela Roland N. , Pruessner Jens C. , Kryspin-Exner Ilse , Gur Ruben C. , Windischberger Christian , Moser Ewald , Habel Ute , Derntl Birgit 
Published: December 2017

AbstractPositive self-evaluation is a major psychological resource modulating stress coping behavior. Sex differences have been reported in self-esteem as well as stress reactions, but so far their interactions have not been investigated. Therefore, we investigated sex-specific associations of self-esteem and stress reaction on behavioral, hormonal and neural levels. We applied a commonly used fMRI-stress task in 80 healthy participants. Men compared to women showed higher activation during stress in hippocampus, precuneus, superior temporal gyrus (STG) and insula. Furthermore, men outperformed women in the stress task and had higher cortisol and testosterone levels than women after stress. Self-esteem had an impact on precuneus, insula and STG activation during stress across the whole group. During stress, men recruit regions associated with emotion and stress regulation, self-referential processing and cognitive control more strongly than women. Self-esteem affects stress processing, however in a sex-independent fashion: participants with lower self-esteem show higher activation of regions involved in emotion and stress regulation, self-referential processing and cognitive control. Taken together, our data suggest that men are more engaged during the applied stress task. Across women and men, lower self-esteem increases the effort in emotion and stress processing and cognitive control, possibly leading to self-related thoughts in stressful situations.
The chemokines CXCL12 and CXCL14 differentially regulate connective tissue markers during limb development
Authors: Nassari Sonya , Blavet Cédrine , Bonnin Marie-Ange , Stricker Sigmar , Duprez Delphine , Fournier-Thibault Claire 
Published: December 2017

AbstractConnective tissues (CT) support and connect organs together. Understanding the formation of CT is important, as CT deregulation leads to fibrosis. The identification of CT specific markers has contributed to a better understanding of CT function during development. In developing limbs, Osr1 transcription factor is involved in the differentiation of irregular CT while the transcription factor Scx labels tendon. In this study, we show that the CXCL12 and CXCL14 chemokines display distinct expression pattern in limb CT during chick development. CXCL12 positively regulates the expression of OSR1 and COL3A1, a collagen subtype of irregular CT, while CXCL14 activates the expression of the tendon marker SCX. We provide evidence that the CXCL12 effect on irregular CT involves CXCR4 receptor and vessels. In addition, the expression of CXCL12, CXCL14 and OSR genes is suppressed by the anti-fibrotic BMP signal. Finally, mechanical forces, known to be involved in adult fibrosis, control the expression of chemokines, CT-associated transcription factors and collagens during limb development. Such unexpected roles of CXCL12 and CXCL14 chemokines during CT differentiation can contribute to a better understanding of the fibrosis mechanisms in adult pathological conditions.
Morphophysiological mechanism of rice yield increase in response to optimized nitrogen management
Authors: Zhou Wei , Lv Tengfei , Yang Zhiping , Wang Tao , Fu Yong , Chen Yong , Hu Binhua , Ren Wanjun 
Published: December 2017

AbstractThe yield-increasing mechanism of an optimized nitrogen fertilizer application (OFA) in rice was reported in this work through a three-year test. Results showed that the number of branches and spikelets increased, panicle length, the diameter and vascular bundle number of panicle-neck internode improved with OFA. Under the condition of OFA, high effective leaf areas, especially for the flag and the second upper leaf areas, increased, the net photosynthetic rate of the upper three leaves promoted, so the photosynthetic productivity went up by a large margin; moreover, the content of soluble protein and chlorophyll of leaf also increased, and the content of soluble sugar and malondialdehyde (MDA) decreased, as a result in slowing down the senescence speed in leaves, and increasing the photosynthetic time. Gene expression level, including MOC1, LAX1, SP1, GS1;1, were up-regulated obviously in different panicle initiation stage under OFA condition, which conduced to the increase in the secondary branches and spikelets. So we concluded that the changes in organ formation and panicle structure, together with the responses in physiological and molecular made the photosynthetic area, rate and time all increased with OFA, which provided the matter basis for the big panicle development, consequently, got a higher yield.
RNAStructuromeDB: A genome-wide database for RNA structural inference
Authors: Andrews Ryan J. , Baber Levi , Moss Walter N. 
Published: December 2017

AbstractRNA plays important roles in almost every aspect of biology, and every aspect of RNA biology is influenced by its folding. This is a particularly important consideration in the era of high-throughput sequencing, when the discovery of novel transcripts far outpaces our knowledge of their functions. To gain a comprehensive picture of biology requires a structural framework for making functional inferences on RNA. To this end we have developed the RNA Structurome Database (https://structurome.bb.iastate.edu), a comprehensive repository of RNA secondary structural information that spans the entire human genome. Here, we compile folding information for every base pair of the genome that may be transcribed: coding, noncoding, and intergenic regions, as well as repetitive elements, telomeres, etc. This was done by fragmenting the GRCh38 reference genome into 154,414,320 overlapping sequence fragments and, for each fragment, calculating a set of metrics based on the sequence’s folding properties. These data will facilitate a wide array of investigations: e.g. discovery of structured regulatory elements in differential gene expression data or noncoding RNA discovery, as well as allow genome-scale analyses of RNA folding.
Surveillance of antibiotic resistance among common Clostridium difficile ribotypes in Hong Kong
Authors: Chow Viola C. Y. , Kwong Thomas N. Y. , So Erica W. M. , Ho Yolanda I. I. , Wong Sunny H. , Lai Raymond W. M. , Chan Raphael C. Y. 
Published: December 2017

AbstractIncidence of Clostridium difficile infection (CDI) is rapidly increasing and it poses a major health burden globally. However, data regarding the epidemiology of CDI in Asia are limited. We aimed to characterize the antimicrobial susceptibility patterns of common ribotypes of toxigenic C. difficile in Hong Kong. Fifty-three PCR ribotypes were identified among 284 toxigenic C. difficile clinical isolates. The five most prevalent ribotypes were 002 (13%), 017 (12%), 014 (10%), 012 (9.2%), and 020 (9.5%). All tested C. difficile strains remained susceptible to metronidazole, vancomycin, meropenem and piperacillin/tazobactam, but highly resistant to cephalosporins. Of the fluoroquinolones, highest resistance to ciprofloxacin was observed (99%), followed by levofloxacin (43%) and moxifloxacin (23%). The two newly emerged PCR ribotypes, 017 and 002, demonstrated high levels of co-resistance towards clindamycin, tetracycline, erythromycin and moxifloxacin. PCR ribotypes 017 and 002 with multi-drug resistance are rapidly emerging and continuous surveillance is important to monitor the epidemiology of C. difficile to prevent outbreaks of CDI.
Exploring biased attention towards body-related stimuli and its relationship with body awareness
Authors: Salvato Gerardo , De Maio Gabriele , Bottini Gabriella 
Published: December 2017

AbstractStimuli of great social relevance exogenously capture attention. Here we explored the impact of body-related stimuli on endogenous attention. Additionally, we investigate the influence of internal states on biased attention towards this class of stimuli. Participants were presented with a body, face, or chair cue to hold in memory (Memory task) or to merely attend (Priming task) and, subsequently, they were asked to find a circle in an unrelated visual search task. In the valid condition, the circle was flanked by the cue. In the invalid condition, the pre-cued picture re-appeared flanking the distracter. In the neutral condition, the cue item did not re-appear in the search display. We found that although bodies and faces benefited from a general faster visual processing compared to chairs, holding them in memory did not produce any additional advantage on attention compared to when they are merely attended. Furthermore, face cues generated larger orienting effect compared to body and chairs cues in both Memory and Priming task. Importantly, results showed that individual sensitivity to internal bodily responses predicted the magnitude of the memory-based orienting of attention to bodies, shedding new light on the relationship between body awareness and visuo-spatial attention.