bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ebbinghaus figures that deceive the eye do not necessarily deceive the hand
Authors: Knol Hester , Huys Raoul , Sarrazin Jean-Christophe , Spiegler Andreas , Jirsa Viktor K. 
Published: June 2017

AbstractIn support of the visual stream dissociation hypothesis, which states that distinct visual streams serve vision-for-perception and vision-for-action, visual size illusions were reported over 20 years ago to ‘deceive the eye but not the hand’. Ever since, inconclusive results and contradictory interpretations have accumulated. Therefore, we investigated the effects of the Ebbinghaus figure on repetitive aiming movements with distinct dynamics. Participants performed a Fitts’ task in which Ebbinghaus figures served as targets. We systematically varied the three parameters which have been shown to influence the perceived size of the Ebbinghaus figure’s target circle, namely the size of the target, its distance to the context circles and the size of the context circles. This paper shows that movement is significantly affected by the context size, but, in contrast to perception, not by the other two parameters. This is especially prominent in the approach phase of the movement towards the target, regardless of the dynamics. To reconcile the findings, we argue that different informational variables are used for size perception and the visual control of movements irrespective of whether certain variables induce (perceptual) illusions.
Application of high rate integrated anaerobic-aerobic/biogranular activated carbon sequencing batch reactor (IAnA-BioGACSBR) for treating strong municipal landfill leachate
Authors: Pirsaheb Meghdad , Hossini Hooshyar , Secula Marius Sebastia , Parvaneh Molouk , Ashraf Ghulam Md 
Published: June 2017

AbstractThe aim of the present study is to evaluate the application of high rate integrated anaerobic-aerobic/biogranular activated carbon sequencing batch reactor (IAnA-BioGACSBR) to treat raw strong leachate from open dumping of municipal solid waste. The influence of two important and effective independent variables, COD concentrations and volumetric filling rate with GAC, onto the leachate treatment were investigated. Three responses such as TKN, BOD and COD were considered for evaluating the interaction of parameters. The results showed that maximum BOD5 removal of 98.9% in anaerobic zone and 99% in aerobic zone was obtained at the highest values of COD (~30000 mg/L) and filling ratio (~50%). The highest values of COD removal efficiency were found to be 98.54% and 98%, at COD rate of 10000 mg/L and GAC of 35%, respectively. The highest removal values of TKN was 77.2% and 78.9% in anaerobic and aerobic zone, respectively. Under optimal conditions, compared with the SBR and the GAC-SBR performances, results reveal that the application of the GAC-SBR has shown better effluent characteristics. Based on the results, it can be asserted that the application of the high rate IAnA-BioGACSBR for the treatment of biodegradable landfill leachate was more effective.
Infectious pancreatic necrosis virus enters CHSE-214 cells via macropinocytosis
Authors: Levican Jorge , Miranda-Cárdenas Camila , Soto-Rifo Ricardo , Aguayo Francisco , Gaggero Aldo , León Oscar 
Published: June 2017

AbstractInfectious pancreatic necrosis virus (IPNV) is a non-enveloped virus belonging to the Birnaviridae family. IPNV produces an acute disease in salmon fingerlings, with high mortality rates and persistent infection in survivors. Although there are reports of IPNV binding to various cells, the viral receptor and entry pathways remain unknown. The aim of this study was to determine the endocytic pathway that allows for IPNV entry. We observed that IPNV stimulated fluid uptake and virus particles co-localysed with the uptake marker dextran in intracellular compartments, suggesting a role for macropinocytosis in viral entry. Consistent with this idea, viral infection was significantly reduced when the Na+/H+ exchanger NHE1 was inhibited with 5-(N-Ethyl-N-isopropyl) amiloride (EIPA). Neither chlorpromazine nor filipin complex I affected IPNV infection. To examine the role of macropinocytosis regulators, additional inhibitors were tested. Inhibitors of the EGFR pathway and the effectors Pak1, Rac1 and PKC reduced viral infection. Together, our results indicate that IPNV is mainly internalized into CHSE-214 cells by macropinocytosis.
Knee subchondral bone perfusion and its relationship to marrow fat and trabeculation on multi-parametric MRI and micro-CT in experimental CKD
Authors: Wang Chao-Ying , Hsu Yu-Juei , Peng Yi-Jen , Lee Herng-Sheng , Chang Yue-Cune , Chang Chih-Shan , Chiang Shih-Wei , Hsu Yi-Chih , Lin Ming-Huang , Huang Guo-Shu 
Published: June 2017

AbstractThe pathogenesis of chronic kidney disease (CKD) is multifactorial. In the progression of CKD arthropathy, arteriosclerosis may alter the knee subchondral bone marrow by altering blood flow through the bone vasculature. Herein, multi-parametric MRI assessment, including dynamic contrast enhanced magnetic resonance imaging (DCE-MRI), magnetic resonance spectroscopy (MRS), MRI T2*, contrast enhanced MR angiography (CE-MRA), and micro-CT were applied in a rodent nephrectomy model to: 1) investigate the blood perfusion of subchondral bone marrow and its relationship to fat water content and trabeculation pattern in CKD and 2) demonstrate the feasibility of using multi-parametric MRI parameters as imaging biomarkers to evaluate the disease’s progression. Two groups of rats in our study underwent either 1) no intervention or 2) 5/6 nephrectomy. We found that in the CKD group, perfusion amplitude A and elimination constant k
el
values were significantly decreased, and vascular permeability k
ep
was significantly increased. MRS showed that fat fraction (FF) was significantly lower, water fraction (WF) was significantly higher in the CKD group. Micro-CT showed a significant loss of trabecular bone. Knee subchondral bone marrow perfusion deficiency in experimental CKD may be associated with decreased fat content, increased water content, and sparse trabeculation.
The Methylation Capacity of Arsenic and Insulin Resistance are Associated with Psychological Characteristics in Children and Adolescents
Authors: Lin Ying-Chin , Su Chien-Tien , Shiue Horng-Sheng , Chen Wei-Jen , Chen Yi-Hua , Choy Cheuk-Sing , Chiou Hung-Yi , Han Bor-Cheng , Hsueh Yu-Mei 
Published: June 2017

AbstractThe goal of the present study was to compare the influence of the methylation capacity of arsenic, as well as insulin resistance on psychological characteristics of school students from elementary and junior high school. 296 elementary and 318 junior high school students participated in health examinations, completed questionnaires and determined their concentrations of urinary arsenic species and psychological characteristics. Insulin resistance was determined by means of the Homeostatic Model Assessment of Insulin Resistance (HOMA-IR). We found that HOMA-IR values were significantly related to increased score of the depression and anger after adjusted for age, gender, schools, father’s educational levels, mother’s educational levels, BMI, body fat, and urinary creatinine in all students. Anxiety scores and depression scores of junior high school children were significantly higher compared to elementary school children, but lower in disruptive behavior scores. HOMA-IR levels were significantly inversely related to self-concept scores in junior high school students. A greater urinary inorganic arsenic percentage (iAs%) was marginally significantly related to a higher depression score in junior high school students. This is the first study to show a relationship between HOMA-IR levels or urinary arsenic profiles and psychological distress in school students from elementary and junior high school.
Echo-Planar J-resolved Spectroscopic Imaging using Dual Read-outs: Implementation and Quantitation of Human Brain Metabolites
Authors: Sarma Manoj K. , Nagarajan Rajakumar , Iqbal Zohaib , Macey Paul M. , Thomas M. Albert 
Published: June 2017

AbstractAttempts have been made to reduce the total scan time in multi-dimensional J-resolved spectroscopic imaging (JRESI) using an echo-planar (EP) readout gradient, but acquisition duration remains a limitation for routine clinical use in the brain. We present here a significant acceleration achieved with a 4D EP-JRESI sequence that collects dual phase encoded lines within a single repetition time (TR) using two bipolar read-out trains. The performance and reliability of this novel 4D sequence, called Multi-Echo based Echo-Planar J-resolved Spectroscopic Imaging (ME-EP-JRESI), was evaluated in 10 healthy controls and a brain phantom using a 3 T MRI/MRS scanner. The prior knowledge fitting (ProFit) algorithm, with a new simulated basis set consisting of macromolecules and lipids apart from metabolites of interest, was used for quantitation. Both phantom and in-vivo data demonstrated that localization and spatial/spectral profiles of metabolites from the ME-EP-JRESI sequence were in good agreement with that of the EP-JRESI sequence. Both in the occipital and temporal lobe, metabolites with higher physiological concentrations including Glx (Glu+Gln), tNAA (NAA+NAAG), mI all had coefficient of variations between 9–25%. In summary, we have implemented, validated and tested the ME-EP-JRESI sequence, demonstrating that multi-echo acquisition can successfully reduce the total scan duration for EP-JRESI sequences.
Physical mechanism for biopolymers to aggregate and maintain in non-equilibrium states
Authors: Ma Wen-Jong , Hu Chin-Kun 
Published: June 2017

AbstractMany human or animal diseases are related to aggregation of proteins. A viable biological organism should maintain in non-equilibrium states. How protein aggregate and why biological organisms can maintain in non-equilibrium states are not well understood. As a first step to understand such complex systems problems, we consider simple model systems containing polymer chains and solvent particles. The strength of the spring to connect two neighboring monomers in a polymer chain is controlled by a parameter s with s → ∞ for rigid-bond. The strengths of bending and torsion angle dependent interactions are controlled by a parameter s
A
with s
A
→ −∞ corresponding to no bending and torsion angle dependent interactions. We find that for very small s
A
, polymer chains tend to aggregate spontaneously and the trend is independent of the strength of spring. For strong springs, the speed distribution of monomers in the parallel (along the direction of the spring to connect two neighboring monomers) and perpendicular directions have different effective temperatures and such systems are in non-equilibrium states.
Axin2-expressing cells differentiate into reparative odontoblasts via autocrine Wnt/β-catenin signaling in response to tooth damage
Authors: Babb Rebecca , Chandrasekaran Dhivya , Carvalho Moreno Neves Vitor , Sharpe Paul T. 
Published: June 2017

AbstractIn non-growing teeth, such as mouse and human molars, primary odontoblasts are long-lived post-mitotic cells that secrete dentine throughout the life of the tooth. New odontoblast-like cells are only produced in response to a damage or trauma. Little is known about the molecular events that initiate mesenchymal stem cells to proliferate and differentiate into odontoblast-like cells in response to dentine damage. The reparative and regenerative capacity of multiple mammalian tissues depends on the activation of Wnt/β-catenin signaling pathway. In this study, we investigated the molecular role of Wnt/β-catenin signaling pathway in reparative dentinogenesis using an in vivo mouse tooth damage model. We found that Axin2 is rapidly upregulated in response to tooth damage and that these Axin2-expressing cells differentiate into new odontoblast-like cells that secrete reparative dentine. In addition, the Axin2-expressing cells produce a source of Wnt that acts in an autocrine manner to modulate reparative dentinogenesis.
Hematopoietic Id Deletion Triggers Endomyocardial Fibrotic and Vascular Defects in the Adult Heart
Authors: Chang Corey , Zhao Qingshi , Gonzalez J. Patrick , Kim Jung H. , Alzahrani Kamal , Del Re Dominic , Fraidenraich Diego 
Published: June 2017

AbstractInhibitor of DNA binding (Id) proteins play important roles in regulating cardiac development via paracrine signaling. Id1/Id3 knockout mice die at mid-gestation with multiple cardiac defects. Single Id knockout studies have not reported cardiomyopathies. To bypass embryonic lethality we used Tie2CRE-mediated recombination to conditionally delete Id1 against global Id3 ablation (Id cDKOs), which develops adult-onset dilated cardiomyopathy. We confirm upregulation of thrombospondin-1 (TSP1) in Id cDKO hearts. Colocalization studies reveal increased TSP1 expression in the vicinity of endothelial cells and near regions of endocardial fibrosis/disruption. Downstream fibrotic molecules were upregulated. Endocardial capillary density was reduced with evidence of vascular distention. Treatment of Id cDKO cardiac explants with LSKL, a peptide antagonist of TSP1 activation of TGFβ, reversed the increased expression of fibrotic molecules. We conducted bone marrow transplant experiments in which we transferred bone marrow cells from Id cDKO mice into lethally irradiated WT mice. The majority of WT recipients of Id cDKO bone marrow cells phenocopied Id cDKO cardiac fibrosis 4 months post-transplantation. Injection of LSKL into adult Id cDKO mice led to downregulation of fibrotic molecules. The results prompt caution when bone marrow transfers from individuals potentially carrying mutations in the Id axis are applied in clinical settings.
The Connection of the Genetic, Cultural and Geographic Landscapes of Transoxiana
Authors: Zhabagin Maxat , Balanovska Elena , Sabitov Zhaxylyk , Kuznetsova Marina , Agdzhoyan Anastasiya , Balaganskaya Olga , Chukhryaeva Marina , Markina Nadezhda , Romanov Alexey , Skhalyakho Roza , Zaporozhchenko Valery , Saroyants Liudmila , Dalimova Dilbar , Davletchurin Damir , Turdikulova Shahlo , Yusupov Yuldash , Tazhigulova Inkar , Akilzhanova Ainur , Tyler-Smith Chris , Balanovsky Oleg 
Published: June 2017

AbstractWe have analyzed Y-chromosomal variation in populations from Transoxiana, a historical region covering the southwestern part of Central Asia. We studied 780 samples from 10 regional populations of Kazakhs, Uzbeks, Turkmens, Dungans, and Karakalpaks using 35 SNP and 17 STR markers. Analysis of haplogroup frequencies using multidimensional scaling and principal component plots, supported by an analysis of molecular variance, showed that the geographic landscape of Transoxiana, despite its distinctiveness and diversity (deserts, fertile river basins, foothills and plains) had no strong influence on the genetic landscape. The main factor structuring the gene pool was the mode of subsistence: settled agriculture or nomadic pastoralism. Investigation of STR-based clusters of haplotypes and their ages revealed that cultural and demic expansions of Transoxiana were not closely connected with each other. The Arab cultural expansion introduced Islam to the region but did not leave a significant mark on the pool of paternal lineages. The Mongol expansion, in contrast, had enormous demic success, but did not impact cultural elements like language and religion. The genealogy of Muslim missionaries within the settled agricultural communities of Transoxiana was based on spiritual succession passed from teacher to disciple. However, among Transoxianan nomads, spiritual and biological succession became merged.
Preparation and in vivo characterization of 51MnCl2 as PET tracer of Ca2+ channel-mediated transport
Authors: Graves Stephen A. , Hernandez Reinier , Valdovinos Hector F. , Ellison Paul A. , Engle Jonathan W. , Barnhart Todd E. , Cai Weibo , Nickles Robert J. 
Published: June 2017

AbstractManganese has long been employed as a T1-shortening agent in magnetic resonance imaging (MRI) applications, but these techniques are limited by the biotoxicity of bulk-manganese. Positron emission tomography (PET) offers superior contrast sensitivity compared with MRI, and recent preclinical PET studies employing 52gMn (t1/2: 5.6 d, β+: 29%) show promise for a variety of applications including cell tracking, neural tract tracing, immunoPET, and functional β-cell mass quantification. The half-life and confounding gamma emissions of 52gMn are prohibitive to clinical translation, but the short-lived 51Mn (t1/2: 46 min, β+: 97%) represents a viable alternative. This work develops methods to produce 51Mn on low-energy medical cyclotrons, characterizes the in vivo behavior of 51MnCl2 in mice, and performs preliminary human dosimetry predictions. 51Mn was produced by proton irradiation of electrodeposited isotopically-enriched 54Fe targets. Radiochemically isolated 51MnCl2 was intravenously administered to ICR mice which were scanned by dynamic and static PET, followed by ex vivo gamma counting. Rapid blood clearance was observed with stable uptake in the pancreas, kidneys, liver, heart, and salivary gland. Dosimetry calculations predict that 370 MBq of 51Mn in an adult human male would yield an effective dose equivalent of approximately 13.5 mSv, roughly equivalent to a clinical [18F]-FDG procedure.
A comprehensive analysis and annotation of human normal urinary proteome
Authors: Zhao Mindi , Li Menglin , Yang Yehong , Guo Zhengguang , Sun Ying , Shao Chen , Li Mingxi , Sun Wei , Gao Youhe 
Published: June 2017

AbstractBiomarkers are measurable changes associated with the disease. Urine can reflect the changes of the body while blood is under control of the homeostatic mechanisms; thus, urine is considered an important source for early and sensitive disease biomarker discovery. A comprehensive profile of the urinary proteome will provide a basic understanding of urinary proteins. In this paper, we present an in-depth analysis of the urinary proteome based on different separation strategies, including direct one dimensional liquid chromatography–tandem mass spectrometry (LC/MS/MS), two dimensional LC/MS/MS, and gel-eluted liquid fraction entrapment electrophoresis/liquid-phase isoelectric focusing followed by two dimensional LC/MS/MS. A total of 6085 proteins were identified in healthy urine, of which 2001 were not reported in previous studies and the concentrations of 2571 proteins were estimated (spanning a magnitude of 106) with an intensity-based absolute quantification algorithm. The urinary proteins were annotated by their tissue distribution. Detailed information can be accessed at the “Human Urine Proteome Database” (www.urimarker.com/urine).
Alignment of liquid crystals by polymers with residual amounts of solvents
Authors: Parshin Alexander M. , Zyryanov Victor Y. , Shabanov Vasily F. 
Published: June 2017

AbstractThe homogeneous nematic layers in liquid crystal cells with treated surfaces are affected by orientational transitions in the electric, magnetic, or temperature fields. The liquid crystal structures formed on solid or liquid surfaces find limited application in identifying the liquid-crystal states by the textures observed in polarized light. The use of surfaces prepared from polymer solutions makes it possible to significantly broaden the range of application of the liquid crystal structures. We investigate the structures with the continuous transformation of the nematic director orientation from radial to planar, which were formed by the polycarbonate surface in the presence of different residual solvents. The structures contained the disclination lines that aligned either by a plate rubbed to provide the homogeneous planar orientation in the LC layer or by a magnetic field applied along the polycarbonate film during the structure formation. The orientational transitions caused by surface treatment, temperature, and electric or magnetic fields in these structures are observed. The comparison of temperature critical distance as well as electric and magnetic coherence lengths with equilibrium length calculated from the expression for the free energy of the nematic is performed. The electro-optical characteristics of the nematic structures are obtained.
Influence of rovibrational excitation on the non-diabatic state-to-state dynamics for the Li(2p) + H2 → LiH + H reaction
Authors: He Di , Yuan Jiuchuang , Chen Maodu 
Published: June 2017

AbstractThe non-adiabatic state-to-state dynamics of the Li(2p) + H2 → LiH + H reaction has been studied using the time-dependent wave packet method, based on a set of diabatic potential energy surfaces recently developed by our group. Integral cross sections (ICSs) can be increase more than an order of magnitude by the vibrational excitation of H2, whereas the ICSs are barely affected by the rotational excitation of H2. Moreover, ICSs of the title reaction with vibrationally excited H2 decrease rapidly with increasing collision energy, which is a typical feature of non-threshold reaction. This phenomenon implies that the title reaction can transformed from an endothermic to an exothermic reaction by vibrational excitation of H2. With the increase of the collision energy, the sideways and backward scattered tendencies of LiH for the Li(2p) + H2(v = 0, j = 0, 1) → LiH + H reactions are enhanced slightly, while the backward scattering tendency of LiH for the Li(2p) + H2(v = 1, j = 0) → LiH + H reaction becomes remarkably weakened. For the reaction with vibrationally excited H2 molecule, both direct and indirect reaction mechanism exist simultaneously.
Rapid on-site monitoring of Legionella pneumophila in cooling tower water using a portable microfluidic system
Authors: Yamaguchi Nobuyasu , Tokunaga Yusuke , Goto Satoko , Fujii Yudai , Banno Fumiya , Edagawa Akiko 
Published: June 2017

AbstractLegionnaires’ disease, predominantly caused by the bacterium Legionella pneumophila, has increased in prevalence worldwide. The most common mode of transmission of Legionella is inhalation of contaminated aerosols, such as those generated by cooling towers. Simple, rapid and accurate methods to enumerate L. pneumophila are required to prevent the spread of this organism. Here, we applied a microfluidic device for on-chip fluorescent staining and semi-automated counting of L. pneumophila in cooling tower water. We also constructed a portable system for rapid on-site monitoring and used it to enumerate target bacterial cells rapidly flowing in the microchannel. A fluorescently-labelled polyclonal antibody was used for the selective detection of L. pneumophila serogroup 1 in the samples. The counts of L. pneumophila in cooling tower water obtained using the system and fluorescence microscopy were similar. The detection limit of the system was 104 cells/ml, but lower numbers of L. pneumophila cells (101 to 103 cells/ml) could be detected following concentration of 0.5–3 L of the water sample by filtration. Our technique is rapid to perform (1.5 h), semi-automated (on-chip staining and counting), and portable for on-site measurement, and it may therefore be effective in the initial screening of Legionella contamination in freshwater.