bluuebunny/crossref_metadata_2025_split huggingface dataset:
Near-simultaneous intravital microscopy of glucose uptake and mitochondrial membrane potential, key endpoints that reflect major metabolic axes in cancer
Authors: Zhu Caigang , Martinez Amy F. , Martin Hannah L. , Li Martin , Crouch Brian T. , Carlson David A. , Haystead Timothy A. J. , Ramanujam Nimmi 
Published: October 2017

AbstractWhile the demand for metabolic imaging has increased in recent years, simultaneous in vivo measurement of multiple metabolic endpoints remains challenging. Here we report on a novel technique that provides in vivo high-resolution simultaneous imaging of glucose uptake and mitochondrial metabolism within a dynamic tissue microenvironment. Two indicators were leveraged; 2-[N-(7-nitrobenz-2-oxa-1, 3-diazol-4-yl) amino]-2-deoxy-D-glucose (2-NBDG) reports on glucose uptake and Tetramethylrhodamine ethyl ester (TMRE) reports on mitochondrial membrane potential. Although we demonstrated that there was neither optical nor chemical crosstalk between 2-NBDG and TMRE, TMRE uptake was significantly inhibited by simultaneous injection with 2-NBDG in vivo. A staggered delivery scheme of the two agents (TMRE injection was followed by 2-NBDG injection after a 10-minute delay) permitted near-simultaneous in vivo microscopy of 2-NBDG and TMRE at the same tissue site by mitigating the interference of 2-NBDG with normal glucose usage. The staggered delivery strategy was evaluated under both normoxic and hypoxic conditions in normal tissues as well as in a murine breast cancer model. The results were consistent with those expected for independent imaging of 2-NBDG and TMRE. This optical imaging technique allows for monitoring of key metabolic endpoints with the unique benefit of repeated, non-destructive imaging within an intact microenvironment.
Mobile fluxons as coherent probes of periodic pinning in superconductors
Authors: Dobrovolskiy Oleksandr V. , Huth Michael , Shklovskij Valerij A. , Vovk Ruslan V. 
Published: October 2017

AbstractThe interaction of (quasi)particles with a periodic potential arises in various domains of science and engineering, such as solid-state physics, chemical physics, and communication theory. An attractive test ground to investigate this interaction is represented by superconductors with artificial pinning sites, where magnetic flux quanta (Abrikosov vortices) interact with the pinning potential U(r) = U(r + R) induced by a nanostructure. At a combination of microwave and dc currents, fluxons act as mobile probes of U(r): The ac component shakes the fluxons in the vicinity of their equilibrium points which are unequivocally determined by the local pinning force counterbalanced by the Lorentz force induced by the dc current, linked to the curvature of U(r) which can then be used for a successful fitting of the voltage responses. A good correlation of the deduced dependences U(r) with the cross sections of the nanostructures points to that pinning is primarily caused by vortex length reduction. Our findings pave a new route to a non-destructive evaluation of periodic pinning in superconductor thin films. The approach should also apply to a broad class of systems whose evolution in time can be described by the coherent motion of (quasi)particles in a periodic potential.
3D Printing Bioinspired Ceramic Composites
Authors: Feilden Ezra , Ferraro Claudio , Zhang Qinghua , García-Tuñón Esther , D’Elia Eleonora , Giuliani Finn , Vandeperre Luc , Saiz Eduardo 
Published: October 2017

AbstractNatural structural materials like bone and shell have complex, hierarchical architectures designed to control crack propagation and fracture. In modern composites there is a critical trade-off between strength and toughness. Natural structures provide blueprints to overcome this, however this approach introduces another trade-off between fine structural manipulation and manufacturing complex shapes in practical sizes and times. Here we show that robocasting can be used to build ceramic-based composite parts with a range of geometries, possessing microstructures unattainable by other production technologies. This is achieved by manipulating the rheology of ceramic pastes and the shear forces they experience during printing. To demonstrate the versatility of the approach we have fabricated highly mineralized composites with microscopic Bouligand structures that guide crack propagation and twisting in three dimensions, which we have followed using an original in-situ crack opening technique. In this way we can retain strength while enhancing toughness by using strategies taken from crustacean shells.
Contributions of MyD88-dependent receptors and CD11c-positive cells to corneal epithelial barrier function against Pseudomonas aeruginosa
Authors: Metruccio Matteo M. E. , Tam Connie , Evans David J. , Xie Anna L. , Stern Michael E. , Fleiszig Suzanne M. J. 
Published: October 2017

AbstractPreviously we reported that corneal epithelial barrier function against Pseudomonas aeruginosa was MyD88-dependent. Here, we explored contributions of MyD88-dependent receptors using vital mouse eyes and confocal imaging. Uninjured IL-1R (−/−) or TLR4 (−/−) corneas, but not TLR2 (−/−), TLR5 (−/−), TLR7 (−/−), or TLR9 (−/−), were more susceptible to P. aeruginosa adhesion than wild-type (3.8-fold, 3.6-fold respectively). Bacteria adherent to the corneas of IL-1R (−/−) or TLR5 (−/−) mice penetrated beyond the epithelial surface only if the cornea was superficially-injured. Bone marrow chimeras showed that bone marrow-derived cells contributed to IL-1R-dependent barrier function. In vivo, but not ex vivo, stromal CD11c+ cells responded to bacterial challenge even when corneas were uninjured. These cells extended processes toward the epithelial surface, and co-localized with adherent bacteria in superficially-injured corneas. While CD11c+ cell depletion reduced IL-6, IL-1β, CXCL1, CXCL2 and CXCL10 transcriptional responses to bacteria, and increased susceptibility to bacterial adhesion (>3-fold), the epithelium remained resistant to bacterial penetration. IL-1R (−/−) corneas also showed down-regulation of IL-6 and CXCL1 genes with and without bacterial challenge. These data show complex roles for TLR4, TLR5, IL-1R and CD11c+ cells in constitutive epithelial barrier function against P. aeruginosa, with details dependent upon in vivo conditions.
Genetic Variants Associated with Episodic Ataxia in Korea
Authors: Choi Kwang-Dong , Kim Ji-Soo , Kim Hyo-Jung , Jung Ileok , Jeong Seong-Hae , Lee Seung-Han , Kim Dong Uk , Kim Sang-Ho , Choi Seo Young , Shin Jin-Hong , Kim Dae-Seong , Park Kyung-Pil , Kim Hyang-Sook , Choi Jae-Hwan 
Published: October 2017

AbstractEpisodic ataxia (EA) is a rare neurological condition characterized by recurrent spells of truncal ataxia and incoordination. Five genes (KCNA1, CACNA1A, CACNB4, SLC1A3, and UBR4) have been linked to EA. Despite extensive efforts to genetically diagnose EA, many patients remain still undiagnosed. Whole-exome sequencing was carried out in 39 Korean patients with EA to identify pathogenic mutations of the five known EA genes. We also evaluated 40 candidate genes that cause EA as a secondary phenotype or cerebellar ataxia. Eighteen patients (46%) revealed genetic information useful for establishing a molecular diagnosis of EA. In 11 patients, 16 pathogenic mutations were detected in three EA genes. These included nine mutations in CACNA1A, three in SLC1A3, and four in UBR4. Three patients had mutations in two genes, either CACNA1A and SLC1A3 or CACNA1A and UBR4, suggesting that SLC1A3 and UBR4 may act as genetic modifiers with synergic effects on the abnormal presynaptic activity caused by CACNA1A mutations. In seven patients with negative results for screening of EA genes, potential pathogenic mutations were identified in the candidate genes ATP1A2, SCN1A, TTBK2, TGM6, FGF14, and KCND3. This study demonstrates the genetic heterogeneity of Korean EA, and indicates that whole-exome sequencing may be useful for molecular genetic diagnosis of EA.
Evidence of Reproductive Stress in Titanosaurian Sauropods Triggered by an Increase in Ecological Competition
Authors: Sellés Albert G. , Vila Bernat , Galobart Àngel 
Published: October 2017

AbstractThe occurrence of dinosaur pathologic eggs in the Late Cretaceous of Europe is well known, but their origin remains unclear. Here we expose the results of a detailed sampling of the conspicuous fossil record of Late Cretaceous titanosaurian eggs (oogenus Megaloolithius) from several southwestern Europe basins. After examining more than 450 samples, we observed a remarkable and statistically supported occurrence of multiple pathologic eggs in a relatively short stratigraphic range at the end of the early Maastrichtian, circa 71-70 Ma. All pathologic specimens exhibit multi-layered eggshell condition, a characteristic related to dystocia, or egg retention within the female uterus for an abnormal prolonged period of time. After exploring various scenarios, the occurrence of pathologic eggs is strongly correlated with an intense dinosaur faunal replacement that occurred during the early Maastrichtian in the Ibero-Armorican Island. Given that inter-species competiveness is proved to produce major affects in ecological communities, our results suggest that pathologies in the eggs of European titanosaurians could be a consequence of an increase in reproductive stress triggered by direct ecological competition between different dinosaurs. Thus, the present study provides a new perspective of how dinosaurs might have been affected by ecological/environmental disturbance.
Female alcohol consumption and fecundability: a systematic review and dose-response meta-analysis
Authors: Fan Dazhi , Liu Li , Xia Qing , Wang Wen , Wu Shuzhen , Tian Guo , Liu Ying , Ni Jing , Wu Song , Guo Xiaoling , Liu Zhengping 
Published: October 2017

AbstractTo what extent could alcohol consumption affects female fertility is still unclear. The aim of this study was to quantitatively summarize the dose-response relation between total and specific types of alcohol beverage (beer, wine, and spirits) consumption in female and the fecundability. Four electronic databases were searched. Observational studies (cohort and case-control) that provided female alcohol consumption and fecundity were eligible. Nineteen studies, involving 98657 women, were included in this study. Compared to non-drinkers, the combined estimate (with relative risk, RR) of alcohol consumers on fecundability was 0.87 (95% CI 0.78–0.95) for overall 19 studies. Compared to non-drinkers, the pooled estimates were 0.89 (95% CI 0.82–0.97) for light drinkers (≤12.5 g/day of ethanol) and 0.77 (95% CI 0.61–0.94) for moderate-heavy drinkers (>12.5 g/day of ethanol). Moreover, compared to non-drinkers, the corresponding estimates on fecundability were 0.98 (95% CI 0.85–1.11), 1.02 (95% CI 0.99–1.05), and 0.92 (95% CI 0.83–1.01) for studies focused on wine, beer and spirits, respectively. Dose-response meta-analysis suggested a linear association between decreased fecundability and every 12.5 g/d increasing in alcohol consumption with a RR 0.98 (95% CI 0.97–0.99). This first systematic review and meta-analysis suggested that female alcohol consumption was associated with a reduced fecundability.
Comparing crop rotations between organic and conventional farming
Authors: Barbieri Pietro , Pellerin Sylvain , Nesme Thomas 
Published: October 2017

AbstractCropland use activities are major drivers of global environmental changes and of farming system resilience. Rotating crops is a critical land-use driver, and a farmers’ key strategy to control environmental stresses and crop performances. Evidence has accumulated that crop rotations have been dramatically simplified over the last 50 years. In contrast, organic farming stands as an alternative production way that promotes crop diversification. However, our understanding of crop rotations is surprisingly limited. In order to understand if organic farming would result in more diversified and multifunctional landscapes, we provide here a novel, systematic comparison of organic-to-conventional crop rotations at the global scale based on a meta-analysis of the scientific literature, paired with an independent analysis of organic-to-conventional land-use. We show that organic farming leads to differences in land-use compared to conventional: overall, crop rotations are 15% longer and result in higher diversity and evener crop species distribution. These changes are driven by a higher abundance of temporary fodders, catch and cover-crops, mostly to the detriment of cereals. We also highlighted differences in organic rotations between Europe and North-America, two leading regions for organic production. This increased complexity of organic crop rotations is likely to enhance ecosystem service provisioning to agroecosystems.
The potential of Antheraea pernyi silk for spinal cord repair
Authors: Varone A. , Knight D. , Lesage S. , Vollrath F. , Rajnicek A. M. , Huang W. 
Published: October 2017

AbstractOne of the most challenging applications for tissue regeneration is spinal cord damage. There is no cure for this, partly because cavities and scar tissue formed after injury present formidable barriers that must be crossed by axons to restore function. Natural silks are considered increasingly for medical applications because they are biocompatible, biodegradable and in selected cases promote tissue growth. Filaments from wild Antheraea pernyi silkworms can support axon regeneration in peripheral nerve injury. Here we presented evidence that degummed A. pernyi filaments (DAPF) support excellent outgrowth of CNS neurons in vitro by cell attachment to the high density of arginine-glycine-aspartic acid tripeptide present in DAPF. Importantly, DAPF showed stiffness properties that are well suited to spinal cord repair by supporting cell growth mechano-biology. Furthermore, we demonstrated that DAPF induced no activation of microglia, the CNS resident immune cells, either in vitro when exposed to DAPF or in vivo when DAPF were implanted in the cord. In vitro DAPF degraded gradually with a corresponding decrease in tensile properties. We conclude that A. pernyi silk meets the major biochemical and biomaterial criteria for spinal repair, and may have potential as a key component in combinatorial strategies for spinal repair.
Outlining tectonic inheritance and construction of the Min Shan region, eastern Tibet, using crustal geometry
Authors: Xu Xiao , Gao Rui , Guo Xiaoyu , Li Wenhui , Li Hongqiang , Wang Haiyan , Huang Xingfu , Lu Zhanwu 
Published: October 2017

AbstractThe ongoing collision between India and Eurasia has created the Tibetan Plateau, which features high elevations and large crustal thicknesses. The easternmost portion of the plateau has long been a key region for studying the uplift mechanism of the Tibetan Plateau, especially after the 2008 Ms. 7.9 Wenchuan earthquake. However, previous studies have assumed that easternmost Tibet is tectonically homogeneous, and the tectonic significance of the Min Shan has been overshadowed by that of its more conspicuous neighbour, the Longmen Shan region. Here, we describe the crustal geometry of the Min Shan region using two newly obtained deep seismic reflection profiles. In this study, we identify an upper-lower crust mechanical decoupling within the Min Shan region; the Min Shan region is tectonically delineated by an inherited boundary fault zone, the Huya fault zone, which was responsible for triggering the 2017 Jiuzhaigou M 7.0 earthquake. Together with the gravity dataset and previous studies in this area, the outlined crustal geometry indicated that crustal-scale shortening at the eastern plateau margin is a primary mechanism driving uplift, although extensive uplift might have occurred due to the decoupled shortening between the upper and lower crust.
Survey of electrically evoked responses in the retina - stimulus preferences and oscillation among neurons
Authors: Tsai David , Morley John W. , Suaning Gregg J. , Lovell Nigel H. 
Published: October 2017

AbstractElectrical stimulation is an important tool in neuroscience research and clinically. In the retina, extensive work has revealed how the retinal ganglion cells respond to extracellular electrical stimulation. But little is known about the responses of other neuronal types, and more generally, how the network responds to stimulation. We conducted a survey of electrically evoked responses, over a range of pulse amplitudes and pulse widths, for 21 cell types spanning the inner two layers of the rabbit retina. It revealed: (i) the evoked responses of some neurons were charge insensitive; (ii) pulse-width sensitivity varied between cell types, allowing preferential recruitment of cell types; and (iii) 10–20 Hz damped oscillations across retinal layers. These oscillations were generated by reciprocal excitatory / inhibitory synapses, at locations as early as the cone-horizontal-cell synapses. These results illustrate at cellular resolution how a network responds to extracellular stimulation, and could inform the development of bioelectronic implants for treating blindness.
Unraveling the roles of CD44/CD24 and ALDH1 as cancer stem cell markers in tumorigenesis and metastasis
Authors: Li Wenzhe , Ma Huailei , Zhang Jin , Zhu Ling , Wang Chen , Yang Yanlian 
Published: October 2017

AbstractCD44/CD24 and ALDH1 are widely used cancer stem cell (CSC) markers in breast cancer. However, their expression is not always consistent even in the same subtype of breast cancer. Systematic comparison of their functions is still lacking. We investigated the expression of CD44, CD24 and ALDH1 in different subtypes of breast cancer cells, and explored their relationship with cancer progression. We defined a parameter CD44/CD24 ratio to present the expression level of CD44 and CD24 and found that high CD44/CD24 ratio and ALDH1+ are both indicators for cancer malignancy, but play different functions during tumor progression. High CD44/CD24 ratio is more related to cell proliferation and tumorigenesis, which is confirmed by mammosphere formation and tumorigenesis in xenotransplanted mice. ALDH1+ is a stronger indicator for cell migration and tumor metastasis. Suppression of CD44 and ALDH1 by siRNA led to decreased tumorigenicity and cell migration capacity. The combination of high CD44/CD24 ratio and ALDH1+ would be a more reliable way to characterize CSCs. Moreover, both high CD44/CD24 ratio and ALDH1+ were conserved during metastasis, from the primary tumors to the circulating tumor cells (CTCs) and the distant metastases, suggesting the significant value of these CSC markers in assisting cancer detection, prognostic evaluation, and even cancer therapeutics.
All-angle Negative Reflection with An Ultrathin Acoustic Gradient Metasurface: Floquet-Bloch Modes Perspective and Experimental Verification
Authors: Liu Bingyi , Zhao Jiajun , Xu Xiaodong , Zhao Wenyu , Jiang Yongyuan 
Published: October 2017

AbstractMetasurface with gradient phase response offers new alternative for steering the propagation of waves. Conventional Snell’s law has been revised by taking the contribution of local phase gradient into account. However, the requirement of momentum matching along the metasurface sets its nontrivial beam manipulation functionality within a limited-angle incidence. In this work, we theoretically and experimentally demonstrate that the acoustic gradient metasurface supports the negative reflection for all-angle incidence. The mode expansion theory is developed to help understand how the gradient metasurface tailors the incident beams, and the all-angle negative reflection occurs when the first negative order Floquet-Bloch mode dominates inside the metasurface slab. The coiling-up space structures are utilized to build desired acoustic gradient metasurface, and the all-angle negative reflections have been perfectly verified by experimental measurements. Our work offers the Floquet-Bloch modes perspective for qualitatively understanding the reflection behaviors of the acoustic gradient metasurface, and the all-angle negative reflection characteristic possessed by acoustic gradient metasurface could enable a new degree of the acoustic wave manipulating and be applied in the functional diffractive acoustic elements, such as the all-angle acoustic back reflector.
Targeted metabolomics and medication classification data from participants in the ADNI1 cohort
Authors: St John-Williams Lisa , Blach Colette , Toledo Jon B. , Rotroff Daniel M. , Kim Sungeun , Klavins Kristaps , Baillie Rebecca , Han Xianlin , Mahmoudiandehkordi Siamak , Jack John , Massaro Tyler J. , Lucas Joseph E. , Louie Gregory , Motsinger-Reif Alison A. , Risacher Shannon L. ,   Alzheimer’s Disease Neuroimaging Initiative,   Alzheimer’s Disease Metabolomics Consortium, Saykin Andrew J. , Kastenmüller Gabi , Arnold Matthias , Koal Therese , Moseley M. Arthur , Mangravite Lara M. , Peters Mette A. , Tenenbaum Jessica D. , Thompson J. Will , Kaddurah-Daouk Rima 
Published: October 2017

AbstractAlzheimer’s disease (AD) is the most common neurodegenerative disease presenting major health and economic challenges that continue to grow. Mechanisms of disease are poorly understood but significant data point to metabolic defects that might contribute to disease pathogenesis. The Alzheimer Disease Metabolomics Consortium (ADMC) in partnership with Alzheimer Disease Neuroimaging Initiative (ADNI) is creating a comprehensive biochemical database for AD. Using targeted and non- targeted metabolomics and lipidomics platforms we are mapping metabolic pathway and network failures across the trajectory of disease. In this report we present quantitative metabolomics data generated on serum from 199 control, 356 mild cognitive impairment and 175 AD subjects enrolled in ADNI1 using AbsoluteIDQ-p180 platform, along with the pipeline for data preprocessing and medication classification for confound correction. The dataset presented here is the first of eight metabolomics datasets being generated for broad biochemical investigation of the AD metabolome. We expect that these collective metabolomics datasets will provide valuable resources for researchers to identify novel molecular mechanisms contributing to AD pathogenesis and disease phenotypes.
High-throughput DFT calculations of formation energy, stability and oxygen vacancy formation energy of ABO3 perovskites
Authors: Emery Antoine A. , Wolverton Chris 
Published: October 2017

AbstractABO3 perovskites are oxide materials that are used for a variety of applications such as solid oxide fuel cells, piezo-, ferro-electricity and water splitting. Due to their remarkable stability with respect to cation substitution, new compounds for such applications potentially await discovery. In this work, we present an exhaustive dataset of formation energies of 5,329 cubic and distorted perovskites that were calculated using first-principles density functional theory. In addition to formation energies, several additional properties such as oxidation states, band gap, oxygen vacancy formation energy, and thermodynamic stability with respect to all phases in the Open Quantum Materials Database are also made publicly available. This large dataset for this ubiquitous crystal structure type contains 395 perovskites that are predicted to be thermodynamically stable, of which many have not yet been experimentally reported, and therefore represent theoretical predictions. The dataset thus opens avenues for future use, including materials discovery in many research-active areas.