bluuebunny/crossref_metadata_2025_split huggingface dataset:
Spatially precise visual gain control mediated by a cholinergic circuit in the midbrain attention network
Authors: Asadollahi Ali , Knudsen Eric I. 
Published: November 2016

AbstractA primary function of the midbrain stimulus selection network is to compute the highest-priority location for attention and gaze. Here we report the contribution of a specific cholinergic circuit to this computation. We functionally disconnected the tegmental cholinergic nucleus isthmi pars parvocellularis (Ipc) from the optic tectum (OT) in barn owls by reversibly blocking excitatory transmission in the Ipc. Focal blockade in the Ipc decreases the gain and spatial discrimination of OT units specifically for the locations represented by the visual receptive fields (VRFs) of the disconnected Ipc units, and causes OT VRFs to shift away from that location. The results demonstrate mechanisms by which this cholinergic circuit controls bottom-up stimulus competition and by which top-down signals can bias this competition, and they establish causal linkages between a particular circuit, gain control and dynamic shifts of VRFs. This circuit may perform the same function in all vertebrate species.
CUG-binding protein 1 regulates HSC activation and liver fibrogenesis
Authors: Wu Xingxin , Wu Xudong , Ma Yuxiang , Shao Fenli , Tan Yang , Tan Tao , Gu Liyun , Zhou Yang , Sun Beicheng , Sun Yang , Wu Xuefeng , Xu Qiang 
Published: November 2016

AbstractExcessive activation of hepatic stellate cells (HSCs) is a key step in liver fibrogenesis. Here we report that CUG-binding protein 1 (CUGBP1) expression is elevated in HSCs and positively correlates with liver fibrosis severity in human liver biopsies. Transforming growth factor-beta (TGF-β) selectively increases CUGBP1 expression in cultured HSCs in a p38 mitogen-activated protein kinase (MAPK)-dependent manner. Knockdown of CUGBP1 inhibits alpha smooth muscle actin (α-SMA) expression and promotes interferon gamma (IFN-γ) production in HSCs in vitro. We further show that CUGBP1 specifically binds to the 3′ untranslated region (UTR) of human IFN-γ mRNA and promotes its decay. In mice, knockdown of CUGBP1 alleviates, whereas its overexpression exacerbates, bile duct ligation (BDL)-induced hepatic fibrosis. Therefore, CUGBP1-mediated IFN-γ mRNA decay is a key event for profibrotic TGF-β-dependent activation of HSCs, and inhibiting CUGBP1 to promote IFN-γ signalling in activated HSCs could be a novel strategy to treat liver fibrosis.
Seafloor observations indicate spatial separation of coseismic and postseismic slips in the 2011 Tohoku earthquake
Authors: Iinuma Takeshi , Hino Ryota , Uchida Naoki , Nakamura Wataru , Kido Motoyuki , Osada Yukihito , Miura Satoshi 
Published: November 2016

AbstractLarge interplate earthquakes are often followed by postseismic slip that is considered to occur in areas surrounding the coseismic ruptures. Such spatial separation is expected from the difference in frictional and material properties in and around the faults. However, even though the 2011 Tohoku Earthquake ruptured a vast area on the plate interface, the estimation of high-resolution slip is usually difficult because of the lack of seafloor geodetic data. Here using the seafloor and terrestrial geodetic data, we investigated the postseismic slip to examine whether it was spatially separated with the coseismic slip by applying a comprehensive finite-element method model to subtract the viscoelastic components from the observed postseismic displacements. The high-resolution co- and postseismic slip distributions clarified the spatial separation, which also agreed with the activities of interplate and repeating earthquakes. These findings suggest that the conventional frictional property model is valid for the source region of gigantic earthquakes.
Field warming experiments shed light on the wheat yield response to temperature in China
Authors: Zhao Chuang , Piao Shilong , Huang Yao , Wang Xuhui , Ciais Philippe , Huang Mengtian , Zeng Zhenzhong , Peng Shushi 
Published: November 2016

AbstractWheat growth is sensitive to temperature, but the effect of future warming on yield is uncertain. Here, focusing on China, we compiled 46 observations of the sensitivity of wheat yield to temperature change (SY,T, yield change per °C) from field warming experiments and 102 SY,T estimates from local process-based and statistical models. The average SY,T from field warming experiments, local process-based models and statistical models is −0.7±7.8(±s.d.)% per °C, −5.7±6.5% per °C and 0.4±4.4% per °C, respectively. Moreover, SY,T is different across regions and warming experiments indicate positive SY,T values in regions where growing-season mean temperature is low, and water supply is not limiting, and negative values elsewhere. Gridded crop model simulations from the Inter-Sectoral Impact Model Intercomparison Project appear to capture the spatial pattern of SY,T deduced from warming observations. These results from local manipulative experiments could be used to improve crop models in the future.
Smoke-free legislation and child health
Authors: Faber Timor , Been Jasper V , Reiss Irwin K , Mackenbach Johan P , Sheikh Aziz 
Published: November 2016

AbstractIn this paper, we aim to present an overview of the scientific literature on the link between smoke-free legislation and early-life health outcomes. Exposure to second-hand smoke is responsible for an estimated 166 ,000 child deaths each year worldwide. To protect people from tobacco smoke, the World Health Organization recommends the implementation of comprehensive smoke-free legislation that prohibits smoking in all public indoor spaces, including workplaces, bars and restaurants. The implementation of such legislation has been found to reduce tobacco smoke exposure, encourage people to quit smoking and improve adult health outcomes. There is an increasing body of evidence that shows that children also experience health benefits after implementation of smoke-free legislation. In addition to protecting children from tobacco smoke in public, the link between smoke-free legislation and improved child health is likely to be mediated via a decline in smoking during pregnancy and reduced exposure in the home environment. Recent studies have found that the implementation of smoke-free legislation is associated with a substantial decrease in the number of perinatal deaths, preterm births and hospital attendance for respiratory tract infections and asthma in children, although such benefits are not found in each study. With over 80% of the world’s population currently unprotected by comprehensive smoke-free laws, protecting (unborn) children from the adverse impact of tobacco smoking and SHS exposure holds great potential to benefit public health and should therefore be a key priority for policymakers and health workers alike.
Na@SiO2-Mediated Addition of Organohalides to Carbonyl Compounds for the Formation of Alcohols and Epoxides
Authors: Kapoor Mohit , Hwu Jih Ru 
Published: November 2016

AbstractAlcohols and epoxides were generated by the addition of organohalides to carbonyl compounds in the presence of sodium metal impregnated with silica gel (Na@SiO2) in THF at 25 °C through a radical pathway. Under the same conditions, Schiff bases were also successfully converted to the corresponding amines. Furthermore, the reaction of aldehydes with α-haloesters or 4-(chloromethyl)-coumarin with the aid of Na@SiO2generated trans epoxides. An unprecedented mechanism is proposed for their formation. The advantages associated with these new reactions include: (1) products are obtained in good-to-excellent yields, (2) reactions are completed at room temperatures in a short period of time (<2.0 h), (3) it is unnecessary to perform the reactions under anhydrous conditions, and (4) the entire process requires only simple manipulations.
Controlled Mycobacterium tuberculosis infection in mice under treatment with anti-IL-17A or IL-17F antibodies, in contrast to TNFα neutralization
Authors: Segueni Noria , Tritto Elaine , Bourigault Marie-Laure , Rose Stéphanie , Erard François , Le Bert Marc , Jacobs Muazzam , Di Padova Franco , Stiehl Daniel P. , Moulin Pierre , Brees Dominique , Chibout Salah-Dine , Ryffel Bernhard , Kammüller Michael , Quesniaux Valerie F. 
Published: November 2016

AbstractAntibodies targeting IL-17A or its receptor IL-17RA show unprecedented efficacy in the treatment of autoimmune diseases such as psoriasis. These therapies, by neutralizing critical mediators of immunity, may increase susceptibility to infections. Here, we compared the effect of antibodies neutralizing IL-17A, IL-17F or TNFα on murine host responses to Mycobacterium tuberculosis infection by evaluating lung transcriptomic, microbiological and histological analyses. Coinciding with a significant increase of mycobacterial burden and pathological changes following TNFα blockade, gene array analyses of infected lungs revealed major changes of inflammatory and immune gene expression signatures 4 weeks post-infection. Specifically, gene expression associated with host-pathogen interactions, macrophage recruitment, activation and polarization, host-antimycobacterial activities, immunomodulatory responses, as well as extracellular matrix metallopeptidases, were markedly modulated by TNFα blockade. IL-17A or IL-17F neutralization elicited only mild changes of few genes without impaired host resistance four weeks after M. tuberculosis infection. Further, the absence of both IL-17RA and IL-22 pathways in genetically deficient mice did not profoundly compromise host control of M. tuberculosis over a 6-months period, ruling out potential compensation between these two pathways, while TNFα-deficient mice succumbed rapidly. These data provide experimental confirmation of the low clinical risk of mycobacterial infection under anti-IL-17A therapy, in contrast to anti-TNFα treatment.
A multiscale computational model predicts distribution of anti-angiogenic isoform VEGF165b in peripheral arterial disease in human and mouse
Authors: Chu Liang-Hui , Ganta Vijay Chaitanya , Choi Min H. , Chen George , Finley Stacey D. , Annex Brian H. , Popel Aleksander S. 
Published: November 2016

AbstractAngiogenesis is the growth of new blood vessels from pre-existing microvessels. Peripheral arterial disease (PAD) is caused by atherosclerosis that results in ischemia mostly in the lower extremities. Clinical trials including VEGF-A administration for therapeutic angiogenesis have not been successful. The existence of anti-angiogenic isoform (VEGF165b) in PAD muscle tissues is a potential cause for the failure of therapeutic angiogenesis. Experimental measurements show that in PAD human muscle biopsies the VEGF165b isoform is at least as abundant if not greater than the VEGF165a isoform. We constructed three-compartment models describing VEGF isoforms and receptors, in human and mouse, to make predictions on the secretion rate of VEGF165b and the distribution of various isoforms throughout the body based on the experimental data. The computational results are consistent with the data showing that in PAD calf muscles secrete mostly VEGF165b over total VEGF. In the PAD calf compartment of human and mouse models, most VEGF165a and VEGF165b are bound to the extracellular matrix. VEGF receptors VEGFR1, VEGFR2 and Neuropilin-1 (NRP1) are mostly in ‘Free State’. This study provides a computational model of VEGF165b in PAD supported by experimental measurements of VEGF165b in human and mouse, which gives insight of VEGF165b in therapeutic angiogenesis and VEGF distribution in human and mouse PAD model.
Piezoelectric extraction of ECG signal
Authors: Ahmad Mahmoud Al 
Published: November 2016

AbstractThe monitoring and early detection of abnormalities or variations in the cardiac cycle functionality are very critical practices and have significant impact on the prevention of heart diseases and their associated complications. Currently, in the field of biomedical engineering, there is a growing need for devices capable of measuring and monitoring a wide range of cardiac cycle parameters continuously, effectively and on a real-time basis using easily accessible and reusable probes. In this paper, the revolutionary generation and extraction of the corresponding ECG signal using a piezoelectric transducer as alternative for the ECG will be discussed. The piezoelectric transducer pick up the vibrations from the heart beats and convert them into electrical output signals. To this end, piezoelectric and signal processing techniques were employed to extract the ECG corresponding signal from the piezoelectric output voltage signal. The measured electrode based and the extracted piezoelectric based ECG traces are well corroborated. Their peaks amplitudes and locations are well aligned with each other.
Assessment of brain reference genes for RT-qPCR studies in neurodegenerative diseases
Authors: Rydbirk Rasmus , Folke Jonas , Winge Kristian , Aznar Susana , Pakkenberg Bente , Brudek Tomasz 
Published: November 2016

AbstractEvaluation of gene expression levels by reverse transcription quantitative real-time PCR (RT-qPCR) has for many years been the favourite approach for discovering disease-associated alterations. Normalization of results to stably expressed reference genes (RGs) is pivotal to obtain reliable results. This is especially important in relation to neurodegenerative diseases where disease-related structural changes may affect the most commonly used RGs. We analysed 15 candidate RGs in 98 brain samples from two brain regions from Alzheimer’s disease (AD), Parkinson’s disease (PD), Multiple System Atrophy, and Progressive Supranuclear Palsy patients. Using RefFinder, a web-based tool for evaluating RG stability, we identified the most stable RGs to be UBE2D2, CYC1, and RPL13 which we recommend for future RT-qPCR studies on human brain tissue from these patients. None of the investigated genes were affected by experimental variables such as RIN, PMI, or age. Findings were further validated by expression analyses of a target gene GSK3B, known to be affected by AD and PD. We obtained high variations in GSK3B levels when contrasting the results using different sets of common RG underlining the importance of a priori validation of RGs for RT-qPCR studies.
Phosphorylation induces distinct alpha-synuclein strain formation
Authors: Ma Meng-Rong , Hu Zhi-Wen , Zhao Yu-Fen , Chen Yong-Xiang , Li Yan-Mei 
Published: November 2016

AbstractSynucleinopathies are a group of neurodegenerative diseases associated with alpha-synuclein (α-Syn) aggregation. Recently, increasing evidence has demonstrated the existence of different structural characteristics or ‘strains’ of α-Syn, supporting the concept that synucleinopathies share several common features with prion diseases and possibly explaining how a single protein results in different clinical phenotypes within synucleinopathies. In earlier studies, the different strains were generated through the regulation of solution conditions, temperature, or repetitive seeded fibrillization in vitro. Here, we synthesize homogeneous α-Syn phosphorylated at serine 129 (pS129 α-Syn), which is highly associated with the pathological changes, and demonstrate that phosphorylation at Ser129 induces α-Syn to form a distinct strain with different structures, propagation properties, and higher cytotoxicity compared with the wild-type α-Syn. The results are the first demonstration that post-translational modification of α-Syn can induce different strain formation, offering a new mechanism for strain formation.
Interaction Control to Synchronize Non-synchronizable Networks
Authors: Schröder Malte , Chakraborty Sagar , Witthaut Dirk , Nagler Jan , Timme Marc 
Published: November 2016

AbstractSynchronization constitutes one of the most fundamental collective dynamics across networked systems and often underlies their function. Whether a system may synchronize depends on the internal unit dynamics as well as the topology and strength of their interactions. For chaotic units with certain interaction topologies synchronization might be impossible across all interaction strengths, meaning that these networks are non-synchronizable. Here we propose the concept of interaction control, generalizing transient uncoupling, to induce desired collective dynamics in complex networks and apply it to synchronize even such non-synchronizable systems. After highlighting that non-synchronizability prevails for a wide range of networks of arbitrary size, we explain how a simple binary control may localize interactions in state space and thereby synchronize networks. Intriguingly, localizing interactions by a fixed control scheme enables stable synchronization across all connected networks regardless of topological constraints. Interaction control may thus ease the design of desired collective dynamics even without knowledge of the networks’ exact interaction topology and consequently have implications for biological and self-organizing technical systems.
Spatial Analysis of PAHs in Soils along an Urban–Suburban–Rural Gradient: scale effect, distribution patterns, diffusion and influencing factors
Authors: Peng Chi , Wang Meie , Chen Weiping 
Published: November 2016

AbstractSpatial statistical methods including Cokriging interpolation, Morans I analysis, and geographically weighted regression (GWR) were used for studying the spatial characteristics of polycyclic aromatic hydrocarbon (PAH) accumulation in urban, suburban, and rural soils of Beijing. The concentrations of PAHs decreased spatially as the level of urbanization decreased. Generally, PAHs in soil showed two spatial patterns on the regional scale: (1) regional baseline depositions with a radius of 16.5 km related to the level of urbanization and (2) isolated pockets of soil contaminated with PAHs were found up to around 3.5 km from industrial point sources. In the urban areas, soil PAHs showed high spatial heterogeneity on the block scale, which was probably related to vegetation cover, land use, and physical soil disturbance. The distribution of total PAHs in urban blocks was unrelated to the indicators of the intensity of anthropogenic activity, namely population density, light intensity at night, and road density, but was significantly related to the same indicators in the suburban and rural areas. The moving averages of molecular ratios suggested that PAHs in the suburban and rural soils were a mix of local emissions and diffusion from urban areas.
Intronless WNT10B-short variant underlies new recurrent allele-specific rearrangement in acute myeloid leukaemia
Authors: Lazzaroni Francesca , Del Giacco Luca , Biasci Daniele , Turrini Mauro , Prosperi Laura , Brusamolino Roberto , Cairoli Roberto , Beghini Alessandro 
Published: November 2016

AbstractDefects in the control of Wnt signaling have emerged as a recurrent mechanism involved in cancer pathogenesis and acute myeloid leukaemia (AML), including the hematopoietic regeneration-associated WNT10B in AC133bright leukaemia cells, although the existence of a specific mechanism remains unproven. We have obtained evidences for a recurrent rearrangement, which involved the WNT10B locus (WNT10BR) within intron 1 (IVS1) and flanked at the 5′ by non-human sequences whose origin remains to be elucidated; it also expressed a transcript variant (WNT10BIVS1) which was mainly detected in a cohort of patients with intermediate/unfavorable risk AML. We also identified in two separate cases, affected by AML and breast cancer respectively, a genomic transposable short form of human WNT10B (ht-WNT10B). The intronless ht-WNT10B resembles a long non-coding RNA (lncRNA), which suggests its involvement in a non-random microhomology-mediated recombination generating the rearranged WNT10BR. Furthermore, our studies supports an autocrine activation primed by the formation of WNT10B-FZD4/5 complexes in the breast cancer MCF7 cells that express the WNT10BIVS1. Chemical interference of WNT-ligands production by the porcupine inhibitor IWP-2 achieved a dose-dependent suppression of the WNT10B-FZD4/5 interactions. These results present the first evidence for a recurrent rearrangement promoted by a mobile ht-WNT10B oncogene, as a relevant mechanism for Wnt involvement in human cancer.
OSR1 and SPAK cooperatively modulate Sertoli cell support of mouse spermatogenesis
Authors: Liu Yung-Liang , Yang Sung-Sen , Chen Shyi-Jou , Lin Yu-Chun , Chu Chin-Chen , Huang Hsin-Hui , Chang Fung-Wei , Yu Mu-Hsien , Lin Shih-Hua , Wu Gwo-Jang , Sytwu Huey-Kang 
Published: November 2016

AbstractWe investigated the role of oxidative stress-responsive kinase-1 (OSR1) and STE20 (sterile 20)/SPS1-related proline/alanine-rich kinase (SPAK), upstream regulators of the Na+-K+-2Cl− cotransporter (NKCC1)—essential for spermatogenesis—in mouse models of male fertility. Global OSR1+/− gene mutations, but not global SPAK−/− or Sertoli cell (SC)-specific OSR1 gene knockout (SC-OSR1−/−), cause subfertility with impaired sperm function and are associated with reduced abundance of phosphorylated (p)-NKCC1 but increased p-SPAK expression in testicular tissue and spermatozoa. To dissect further in a SC-specific manner the compensatory effect of OSR1 and SPAK in male fertility, we generated SC-OSR1−/− and SPAK−/− double knockout (DKO) male mice. These are infertile with defective spermatogenesis, presenting a SC-only-like syndrome. Disrupted meiotic progression and increased germ cell apoptosis occurred in the first wave of spermatogenesis. The abundance of total and p-NKCC1 was significantly decreased in the testicular tissues of DKO mice. These results indicate that OSR1 and SPAK cooperatively regulate NKCC1-dependent spermatogenesis in a SC-restricted manner.
Emergence of the ability to perceive dynamic events from still pictures in human infants
Authors: Shirai Nobu , Imura Tomoko 
Published: November 2016

AbstractThe ability to understand a visual scene depicted in a still image is among the abilities shared by all human beings. The aim of the present study was to examine when human infants acquire the ability to perceive the dynamic events depicted in still images (implied motion perception). To this end, we tested whether 4- and 5-month-old infants shifted their gaze toward the direction cued by a dynamic running action depicted in a still figure of a person. Results indicated that the 5- but not the 4-month-olds showed a significant gaze shift toward the direction implied by the posture of the runner (Experiments 1, 2, and 3b). Moreover, the older infants showed no significant gaze shift toward the direction cued by control stimuli, which depicted a figure in a non-dynamic standing posture (Experiment 1), an inverted running figure (Experiment 2), and some of the body parts of a running figure (Experiment 3a). These results suggest that only the older infants responded in the direction of the implied running action of the still figure; thus, implied motion perception emerges around 5 months of age in human infants.