bluuebunny/crossref_metadata_2025_split huggingface dataset:
Slow cooling and highly efficient extraction of hot carriers in colloidal perovskite nanocrystals
Authors: Li Mingjie , Bhaumik Saikat , Goh Teck Wee , Kumar Muduli Subas , Yantara Natalia , Grätzel Michael , Mhaisalkar Subodh , Mathews Nripan , Sum Tze Chien 
Published: February 2017

AbstractHot-carrier solar cells can overcome the Shockley-Queisser limit by harvesting excess energy from hot carriers. Inorganic semiconductor nanocrystals are considered prime candidates. However, hot-carrier harvesting is compromised by competitive relaxation pathways (for example, intraband Auger process and defects) that overwhelm their phonon bottlenecks. Here we show colloidal halide perovskite nanocrystals transcend these limitations and exhibit around two orders slower hot-carrier cooling times and around four times larger hot-carrier temperatures than their bulk-film counterparts. Under low pump excitation, hot-carrier cooling mediated by a phonon bottleneck is surprisingly slower in smaller nanocrystals (contrasting with conventional nanocrystals). At high pump fluence, Auger heating dominates hot-carrier cooling, which is slower in larger nanocrystals (hitherto unobserved in conventional nanocrystals). Importantly, we demonstrate efficient room temperature hot-electrons extraction (up to ∼83%) by an energy-selective electron acceptor layer within 1 ps from surface-treated perovskite NCs thin films. These insights enable fresh approaches for extremely thin absorber and concentrator-type hot-carrier solar cells.
Dosage sensitivity is a major determinant of human copy number variant pathogenicity
Authors: Rice Alan M. , McLysaght Aoife 
Published: February 2017

AbstractHuman copy number variants (CNVs) account for genome variation an order of magnitude larger than single-nucleotide polymorphisms. Although much of this variation has no phenotypic consequences, some variants have been associated with disease, in particular neurodevelopmental disorders. Pathogenic CNVs are typically very large and contain multiple genes, and understanding the cause of the pathogenicity remains a major challenge. Here we show that pathogenic CNVs are significantly enriched for genes involved in development and genes that have greater evolutionary copy number conservation across mammals, indicative of functional constraints. Conversely, genes found in benign CNV regions have more variable copy number. These evolutionary constraints are characteristic of genes in pathogenic CNVs and can only be explained by dosage sensitivity of those genes. These results implicate dosage sensitivity of individual genes as a common cause of CNV pathogenicity. These evolutionary metrics suggest a path to identifying disease genes in pathogenic CNVs.
Snail reprograms glucose metabolism by repressing phosphofructokinase PFKP allowing cancer cell survival under metabolic stress
Authors: Kim Nam Hee , Cha Yong Hoon , Lee Jueun , Lee Seon-Hyeong , Yang Ji Hye , Yun Jun Seop , Cho Eunae Sandra , Zhang Xianglan , Nam Miso , Kim Nami , Yuk Young-Su , Cha So Young , Lee Yoonmi , Ryu Joo Kyung , Park Sunghyouk , Cheong Jae-Ho , Kang Sang Won , Kim Soo-Youl , Hwang Geum-Sook , Yook Jong In , Kim Hyun Sil 
Published: February 2017

AbstractDynamic regulation of glucose flux between aerobic glycolysis and the pentose phosphate pathway (PPP) during epithelial–mesenchymal transition (EMT) is not well-understood. Here we show that Snail (SNAI1), a key transcriptional repressor of EMT, regulates glucose flux toward PPP, allowing cancer cell survival under metabolic stress. Mechanistically, Snail regulates glycolytic activity via repression of phosphofructokinase, platelet (PFKP), a major isoform of cancer-specific phosphofructokinase-1 (PFK-1), an enzyme involving the first rate-limiting step of glycolysis. The suppression of PFKP switches the glucose flux towards PPP, generating NADPH with increased metabolites of oxidative PPP. Functionally, dynamic regulation of PFKP significantly potentiates cancer cell survival under metabolic stress and increases metastatic capacities in vivo. Further, knockdown of PFKP rescues metabolic reprogramming and cell death induced by loss of Snail. Thus, the Snail-PFKP axis plays an important role in cancer cell survival via regulation of glucose flux between glycolysis and PPP.
Dynamics of auditory cortical activity during behavioural engagement and auditory perception
Authors: Carcea Ioana , Insanally Michele N. , Froemke Robert C. 
Published: February 2017

AbstractBehavioural engagement can enhance sensory perception. However, the neuronal mechanisms by which behavioural states affect stimulus perception remain poorly understood. Here we record from single units in auditory cortex of rats performing a self-initiated go/no-go auditory task. Self-initiation transforms cortical tuning curves and bidirectionally modulates stimulus-evoked activity patterns and improves auditory detection and recognition. Trial self-initiation decreases the rate of spontaneous activity in the majority of recorded cells. Optogenetic disruption of cortical activity before and during tone presentation shows that these changes in evoked and spontaneous activity are important for sound perception. Thus, behavioural engagement can prepare cortical circuits for sensory processing by dynamically changing sound representation and by controlling the pattern of spontaneous activity.
Amygdala-hippocampal dynamics during salient information processing
Authors: Zheng Jie , Anderson Kristopher L. , Leal Stephanie L. , Shestyuk Avgusta , Gulsen Gultekin , Mnatsakanyan Lilit , Vadera Sumeet , Hsu Frank P. K. , Yassa Michael A. , Knight Robert T. , Lin Jack J. 
Published: February 2017

AbstractRecognizing motivationally salient information is critical to guiding behaviour. The amygdala and hippocampus are thought to support this operation, but the circuit-level mechanism of this interaction is unclear. We used direct recordings in the amygdala and hippocampus from human epilepsy patients to examine oscillatory activity during processing of fearful faces compared with neutral landscapes. We report high gamma (70–180 Hz) activation for fearful faces with earlier stimulus evoked onset in the amygdala compared with the hippocampus. Attending to fearful faces compared with neutral landscape stimuli enhances low-frequency coupling between the amygdala and the hippocampus. The interaction between the amygdala and hippocampus is largely unidirectional, with theta/alpha oscillations in the amygdala modulating hippocampal gamma activity. Granger prediction, phase slope index and phase lag analysis corroborate this directional coupling. These results demonstrate that processing emotionally salient events in humans engages an amygdala-hippocampal network, with the amygdala influencing hippocampal dynamics during fear processing.
Non-quasiparticle transport and resistivity saturation: a view from the large-N limit
Authors: Werman Yochai , Kivelson Steven A. , Berg Erez 
Published: February 2017

AbstractThe electron dynamics in metals are usually well described by the semiclassical approximation for long-lived quasiparticles. However, in some metals, the scattering rate of the electrons at elevated temperatures becomes comparable to the Fermi energy; then, this approximation breaks down, and the full quantum-mechanical nature of the electrons must be considered. In this work, we study a solvable, large-N electron–phonon model, which at high temperatures enters the non-quasiparticle regime. In this regime, the model exhibits “resistivity saturation” to a temperature-independent value of the order of the quantum of resistivity—the first analytically tractable model to do so. The saturation is not due to a fundamental limit on the electron lifetime, but rather to the appearance of a second conductivity channel. This is suggestive of the phenomenological “parallel resistor formula”, known to describe the resistivity of a variety of saturating metals.
Decreased expression of STING predicts poor prognosis in patients with gastric cancer
Authors: Song Shushu , Peng Peike , Tang Zhaoqing , Zhao Junjie , Wu Weicheng , Li Haojie , Shao Miaomiao , Li Lili , Yang Caiting , Duan Fangfang , Zhang Mingming , Zhang Jie , Wu Hao , Li Can , Wang Xuefei , Wang Hongshan , Ruan Yuanyuan , Gu Jianxin 
Published: February 2017

AbstractSTING (stimulator of interferon genes) has recently been found to play an important role in host defenses against virus and intracellular bacteria via the regulation of type-I IFN signaling and innate immunity. Chronic infection with Helicobacter pylori is identified as the strongest risk factor for gastric cancer. Thus, we aim to explore the function of STING signaling in the development of gastric cancer. Immunohistochemistry was used to detect STING expression in 217 gastric cancer patients who underwent surgical resection. STING protein expression was remarkably decreased in tumor tissues compared to non-tumor tissues, and low STING staining intensity was positively correlated with tumor size, tumor invasion depth, lymph mode metastasis, TNM stage, and reduced patients’ survival. Multivariate analysis identified STING as an independent prognostic factor, which could improve the predictive accuracy for overall survival when incorporated into TNM staging system. In vitro studies revealed that knock-down of STING promoted colony formation, viability, migration and invasion of gastric cancer cells, and also led to a defect in cytosolic DNA sensing. Besides, chronic H. pylori infection up-regulated STING expression and activated STING signaling in mice. In conclusion, STING was proposed as a novel independent prognostic factor and potential immunotherapeutic target for gastric cancer.
Three novel ANO5 missense mutations in Caucasian and Chinese families and sporadic cases with gnathodiaphyseal dysplasia
Authors: Jin Lingling , Liu Yi , Sun Fanyue , Collins Michael T. , Blackwell Keith , Woo Albert S. , Reichenberger Ernst J. , Hu Ying 
Published: February 2017

AbstractGnathodiaphyseal dysplasia (GDD; MIM#166260) is an autosomal dominant syndrome with characteristic cemento-osseous lesions of jawbones, bone fragility, and diaphyseal sclerosis of tubular bones. To date, only five mutations in the proposed calcium-activated chloride channel ANO5/TMEM16E gene have been identified. In this study, we describe two families and two singular patients with three new mutations. One Caucasian family with seven affected members exhibited frequent bone fractures and florid osseous dysplasia (p.Cys356Tyr), while one Chinese family with two affected members suffered from cementoma and purulent osteomyelitis (p.Cys360Tyr). In addition, two different novel mutations (p.Gly518Glu and p.Arg215Gly) were identified in sporadic patients without family history. In vitro studies overexpressing GDD mutations (p.Cys356Tyr and p.Cys360Tyr) showed significantly reduced ANO5 protein. It appears that all GDD mutations known so far locate in an extracellular domain following the first transmembrane domain or in the 4th putative transmembrane domain. Both wild-type and mutant ANO5 protein localize to the endoplasmic reticulum. After Ano5 gene knock-down with shRNA in MC3T3-E1 osteoblast precursors we saw elevated expression of osteoblast-related genes such as Col1a1, osteocalcin, osterix and Runx2 as well as increased mineral nodule formation in differentiating cells. Our data suggest that ANO5 plays a role in osteoblast differentiation.
DoGMP1 from Dendrobium officinale contributes to mannose content of water-soluble polysaccharides and plays a role in salt stress response
Authors: He Chunmei , Yu Zhenming , Teixeira da Silva Jaime A. , Zhang Jianxia , Liu Xuncheng , Wang Xiaojuan , Zhang Xinhua , Zeng Songjun , Wu Kunlin , Tan Jianwen , Ma Guohua , Luo Jianping , Duan Jun 
Published: February 2017

AbstractGDP-mannose pyrophosphorylase (GMP) catalyzed the formation of GDP-mannose, which serves as a donor for the biosynthesis of mannose-containing polysaccharides. In this study, three GMP genes from Dendrobium officinale (i.e., DoGMPs) were cloned and analyzed. The putative 1000 bp upstream regulatory region of these DoGMPs was isolated and cis-elements were identified, which indicates their possible role in responses to abiotic stresses. The DoGMP1 protein was shown to be localized in the cytoplasm. To further study the function of the DoGMP1 gene, 35S:DoGMP1 transgenic A. thaliana plants with an enhanced expression level of DoGMP1 were generated. Transgenic plants were indistinguishable from wild-type (WT) plants in tissue culture or in soil. However, the mannose content of the extracted water-soluble polysaccharides increased 67%, 96% and 92% in transgenic lines #1, #2 and #3, respectively more than WT levels. Germination percentage of seeds from transgenic lines was higher than WT seeds and the growth of seedlings from transgenic lines was better than WT seedlings under salinity stress (150 mM NaCl). Our results provide genetic evidence for the involvement of GMP genes in the biosynthesis of mannose-containing polysaccharides and the mediation of GMP genes in the response to salt stress during seed germination and seedling growth.
A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis
Authors: Tsugama Daisuke , Matsuyama Kohei , Ide Mayui , Hayashi Masato , Fujino Kaien , Masuda Kiyoshi 
Published: February 2017

AbstractAsparagus officinalis (garden asparagus) is a dioecious perennial crop. For agricultural production of A. officinalis, male plants have advantages over female plants. The dioecism of A. officinalis is determined by the single dominant masculinizing M locus, which is involved in tapetal cell development in stamens, but thus far no specific M locus genes have been identified. We re-analyzed previously published RNA-Seq data for the A. officinalis transcriptome, cloned some genes, and discovered that a putative ortholog of MYB35, which is indispensable for tapetal cell development in Arabidopsis thaliana, is absent in the genome of female plants in A. officinalis. In a reverse transcription-PCR analysis, this gene (AoMYB35) exhibited strong expression in stamens in male flowers at an early developmental stage. In an in situ hybridization analysis, AoMYB35 mRNA was detected in tapetal cells in young male flowers. GFP-fused AoMYB35 was detected in the nucleus when expressed in onion epidermal cells. These results suggest that AoMYB35 is a male-specific gene encoding a putative transcription factor that acts in tapetal cells at an early stage of flower development in A. officinalis. Together, the results support the idea that AoMYB35 is a candidate for one of the M locus genes in A. officinalis.
Uncertainties in the Shuttle Radar Topography Mission (SRTM) Heights: Insights from the Indian Himalaya and Peninsula
Authors: Mukul Manas , Srivastava Vinee , Jade Sridevi , Mukul Malay 
Published: February 2017

AbstractThe Shuttle Radar Topography Mission (SRTM) Digital Terrain Elevation Data (DTED) are used with the consensus view that it has a minimum vertical accuracy of 16 m absolute error at 90% confidence (Root Mean Square Error (RMSE) of 9.73 m) world-wide. However, vertical accuracy of the data decreases with increase in slope and elevation due to presence of large outliers and voids. Therefore, studies using SRTM data “as is”, especially in regions like the Himalaya, are not statistically meaningful. New data from ~200 high-precision static Global Position System (GPS) Independent Check Points (ICPs) in the Himalaya and Peninsular India indicate that only 1-arc X-Band data are usable “as is” in the Himalaya as it has height accuracy of 9.18 m (RMSE). In contrast, recently released (2014–2015) “as-is” 1-arc and widely used 3-arc C-Band data have a height accuracy of RMSE 23.53 m and 47.24 m and need to be corrected before use. Outlier and void filtering improves the height accuracy to RMSE 8 m, 10.14 m, 14.38 m for 1-arc X and C-Band and 3-arc C-Band data respectively. Our study indicates that the C-Band 90 m and 30 m DEMs are well-aligned and without any significant horizontal offset implying that area and length computations using both the datasets have identical values.
Respiratory impedance is correlated with morphological changes in the lungs on three-dimensional CT in patients with COPD
Authors: Karayama Masato , Inui Naoki , Mori Kazutaka , Kono Masato , Hozumi Hironao , Suzuki Yuzo , Furuhashi Kazuki , Hashimoto Dai , Enomoto Noriyuki , Fujisawa Tomoyuki , Nakamura Yutaro , Watanabe Hiroshi , Suda Takafumi 
Published: February 2017

AbstractThe forced oscillation technique provides information concerning respiratory impedance, which comprises resistance and reactance of the respiratory system. However, its relationship with morphological changes of the lungs in chronic obstructive pulmonary disease (COPD) remains unclear. Respiratory impedance and spirometric data were evaluated in 98 patients with COPD and 49 reference subjects. Wall thickness (WT) and airway intraluminal area (Ai) of third- to sixth-generation bronchi, and percentage low-attenuation area with less than −950 HU (%LAA) of lungs were measured using three-dimensional computed tomography. COPD patients had higher respiratory impedance, decreased Ai, and increased %LAA compared with reference subjects. Indices of respiratory resistance and reactance and forced expiratory volume in 1 second (FEV1) were correlated with Ai, and the association between percent predicted FEV1 and Ai was predominant in distal bronchi. The difference in respiratory resistance between 5 Hz and 20 Hz (R5–R20) and FEV1/forced vital capacity ratio (FEV1/FVC) were correlated with WT. The %LAA was correlated with the FEV1/FVC ratio and respiratory reactance. Airway function measurements with the forced oscillation technique provide complementary information to spirometry in COPD.
Nucleosome Positioning and NDR Structure at RNA Polymerase III Promoters
Authors: Helbo Alexandra Søgaard , Lay Fides D. , Jones Peter A. , Liang Gangning , Grønbæk Kirsten 
Published: February 2017

AbstractChromatin is structurally involved in the transcriptional regulation of all genes. While the nucleosome positioning at RNA polymerase II (pol II) promoters has been extensively studied, less is known about the chromatin structure at pol III promoters in human cells. We use a high-resolution analysis to show substantial differences in chromatin structure of pol II and pol III promoters, and between subtypes of pol III genes. Notably, the nucleosome depleted region at the transcription start site of pol III genes extends past the termination sequences, resulting in nucleosome free gene bodies. The +1 nucleosome is located further downstream than at pol II genes and furthermore displays weak positioning. The variable position of the +1 location is seen not only within individual cell populations and between cell types, but also between different pol III promoter subtypes, suggesting that the +1 nucleosome may be involved in the transcriptional regulation of pol III genes. We find that expression and DNA methylation patterns correlate with distinct accessibility patterns, where DNA methylation associates with the silencing and inaccessibility at promoters. Taken together, this study provides the first high-resolution map of nucleosome positioning and occupancy at human pol III promoters at specific loci and genome wide.
Tunability and Sensing Properties of Plasmonic/1D Photonic Crystal
Authors: Shaban Mohamed , Ahmed Ashour M. , Abdel-Rahman Ehab , Hamdy Hany 
Published: February 2017

AbstractGold/one-dimensional photonic crystal (Au/1D-PC) is fabricated and applied for sensitive sensing of glucose and different chemical molecules of various refractive indices. The Au layer thickness is optimized to produce surface plasmon resonance (SPR) at the right edge of the photonic band gap (PBG). As the Au deposition time increased to 60 sec, the PBG width is increased from 46 to 86 nm in correlation with the behavior of the SPR. The selectivity of the optimized Au/1D-PC sensor is tested upon the increase of the environmental refractive index of the detected molecules. The resonance wavelength and the PBG edges increased linearly and the transmitted intensity increased nonlinearly as the environment refractive index increased. The SPR splits to two modes during the detection of chloroform molecules based on the localized capacitive coupling of Au particles. Also, this structure shows high sensitivity at different glucose concentrations. The PBG and SPR are shifted to longer wavelengths, and PBG width is decreased linearly with a rate of 16.04 Å/(μg/mm3) as the glucose concentration increased. The proposed structure merits; operation at room temperature, compact size, and easy fabrication; suggest that the proposed structure can be efficiently used for the biomedical and chemical application.
Structural insights into human angiogenin variants implicated in Parkinson’s disease and Amyotrophic Lateral Sclerosis
Authors: Bradshaw William J. , Rehman Saima , Pham Tram T. K. , Thiyagarajan Nethaji , Lee Rebecca L. , Subramanian Vasanta , Acharya K. Ravi 
Published: February 2017

AbstractMutations in Angiogenin (ANG), a member of the Ribonuclease A superfamily (also known as RNase 5) are known to be associated with Amyotrophic Lateral Sclerosis (ALS, motor neurone disease) (sporadic and familial) and Parkinson’s Disease (PD). In our previous studies we have shown that ANG is expressed in neurons during neuro-ectodermal differentiation, and that it has both neurotrophic and neuroprotective functions. In addition, in an extensive study on selective ANG-ALS variants we correlated the structural changes to the effects on neuronal survival and the ability to induce stress granules in neuronal cell lines. Furthermore, we have established that ANG-ALS variants which affect the structure of the catalytic site and either decrease or increase the RNase activity affect neuronal survival. Neuronal cell lines expressing the ANG-ALS variants also lack the ability to form stress granules. Here, we report a detailed experimental structural study on eleven new ANG-PD/ALS variants which will have implications in understanding the molecular basis underlying their role in PD and ALS.
Clay mineralogical and geochemical proxies of the East Asian summer monsoon evolution in the South China Sea during Late Quaternary
Authors: Chen Quan , Liu Zhifei , Kissel Catherine 
Published: February 2017

AbstractThe East Asian summer monsoon controls the climatic regime of an extended region through temperature and precipitation changes. As the East Asian summer monsoon is primarily driven by the northern hemisphere summer insolation, such meteorological variables are expected to significantly change on the orbital timescale, influencing the composition of terrestrial sediments in terms of both mineralogy and geochemistry. Here we present clay mineralogy and major element composition of Core MD12-3432 retrieved from the northern South China Sea, and we investigate their relationship with the East Asian summer monsoon evolution over the last 400 ka. The variability of smectite/(illite + chlorite) ratio presents a predominant precession periodicity, synchronous with the northern hemisphere summer insolation changes and therefore with that of the East Asian summer monsoon. Variations in K2O/Al2O3 are characterized by eccentricity cycles, increasing during interglacials when the East Asian summer monsoon is enhanced. Based on the knowledge of sediment provenances, we suggest that these two proxies in the South China Sea are linked to the East Asian summer monsoon evolution with different mechanisms, which are (1) contemporaneous chemical weathering intensity in Luzon for smectite/(illite + chlorite) ratio and (2) river denudation intensity for K2O/Al2O3 ratio of bulk sediment.