bluuebunny/crossref_metadata_2025_split huggingface dataset:
High Resolution AMS Dates from Shubayqa 1, northeast Jordan Reveal Complex Origins of Late Epipalaeolithic Natufian in the Levant
Authors: Richter Tobias , Arranz-Otaegui Amaia , Yeomans Lisa , Boaretto Elisabetta 
Published: November 2017

AbstractThe Late Epipalaeolithic Natufian (~14,600 − 11,500 cal BP) is a key period in the prehistory of southwest Asia. Often described as a complex hunting and gathering society with increased sedentism, intensive plant exploitation and associated with an increase in artistic and symbolic material culture, it is positioned between the earlier Upper- and Epi-Palaeolithic and the early Neolithic, when plant cultivation and subsequently animal domestication began. The Natufian has thus often been seen as a necessary pre-adaptation for the emergence of Neolithic economies in southwest Asia. Previous work has pointed to the Mediterranean woodland zone of the southern Levant as the ‘core zone’ of the Early Natufian. Here we present a new sequence of 27 AMS radiocarbon dates from the Natufian site Shubayqa 1 in northeast Jordan. The results suggest that the site was occupied intermittently between ~14,600 − 12,000 cal BP. The dates indicate the Natufian emerged just as early in eastern Jordan as it did in the Mediterranean woodland zone. This suggests that the origins and development of the Natufian were not tied to the ecological conditions of the Mediterranean woodlands, and that the evolution of this hunting and gathering society was more complex and heterogeneous than previously thought.
Similarity-based Regularized Latent Feature Model for Link Prediction in Bipartite Networks
Authors: Wang Wenjun , Chen Xue , Jiao Pengfei , Jin Di 
Published: November 2017

AbstractLink prediction is an attractive research topic in the field of data mining and has significant applications in improving performance of recommendation system and exploring evolving mechanisms of the complex networks. A variety of complex systems in real world should be abstractly represented as bipartite networks, in which there are two types of nodes and no links connect nodes of the same type. In this paper, we propose a framework for link prediction in bipartite networks by combining the similarity based structure and the latent feature model from a new perspective. The framework is called Similarity Regularized Nonnegative Matrix Factorization (SRNMF), which explicitly takes the local characteristics into consideration and encodes the geometrical information of the networks by constructing a similarity based matrix. We also develop an iterative scheme to solve the objective function based on gradient descent. Extensive experiments on a variety of real world bipartite networks show that the proposed framework of link prediction has a more competitive, preferable and stable performance in comparison with the state-of-art methods.
The necessity to choose causes the effects of reward on saccade preparation
Authors: Wolf Christian , Heuer Anna , Schubö Anna , Schütz Alexander C. 
Published: November 2017

AbstractWhen humans have to choose between different options, they can maximize their payoff by choosing the option that yields the highest reward. Information about reward is not only used to optimize decisions but also for movement preparation to minimize reaction times to rewarded targets. Here, we show that this is especially true in contexts in which participants additionally have to choose between different options. We probed eye movement preparation by measuring saccade latencies to differently rewarded single targets (single-trial) appearing left or right from fixation. In choice-trials, both targets were displayed and participants were free to decide for one target to receive the corresponding reward. In blocks without choice-trials, single-trial latencies were not or only weakly affected by reward. With choice-trials present, the influence of reward increased with the proportion and difficulty of choices and decreased when a cue indicated that no choice will be necessary. Choices caused a delay in subsequent single-trial responses to the non-chosen option. Taken together, our results suggest that reward affects saccade preparation mainly when the outcome is uncertain and depends on the participants’ behavior, for instance when they have to choose between targets differing in reward.
Feeding type and development drive the ingestion of microplastics by freshwater invertebrates
Authors: Scherer Christian , Brennholt Nicole , Reifferscheid Georg , Wagner Martin 
Published: November 2017

AbstractMicroscopic plastic items (microplastics) are ubiquitously present in aquatic ecosystems. With decreasing size their availability and potential to accumulate throughout food webs increase. However, little is known on the uptake of microplastics by freshwater invertebrates. To address this, we exposed species with different feeding strategies to 1, 10 and 90 µm fluorescent polystyrene spheres (3–3 000 particles mL−1). Additionally, we investigated how developmental stages and a co-exposure to natural particles (e.g., food) modulate microplastic ingestion. All species ingested microplastics in a concentration-dependent manner with Daphnia magna consuming up to 6 180 particles h−1, followed by Chironomus riparius (226 particles h−1), Physella acuta (118 particles h−1), Gammarus pulex (10 particles h−1) and Lumbriculus variegatus (8 particles h−1). D. magna did not ingest 90 µm microplastics whereas the other species preferred larger microplastics over 1 µm in size. In C. riparius and D. magna, size preference depended on the life stage with larger specimens ingesting more and larger microplastics. The presence of natural particles generally reduced the microplastics uptake. Our results demonstrate that freshwater invertebrates have the capacity to ingest microplastics. However, the quantity of uptake depends on their feeding type and morphology as well as on the availability of microplastics.
Algae associated with coral degradation affects risk assessment in coral reef fishes
Authors: McCormick Mark I. , Barry Randall P. , Allan Bridie J. M. 
Published: November 2017

AbstractHabitat degradation alters the chemical landscape through which information about community dynamics is transmitted. Olfactory information is crucial for risk assessment in aquatic organisms as predators release odours when they capture prey that lead to an alarm response in conspecific prey. Recent studies show some coral reef fishes are unable to use alarm odours when surrounded by dead-degraded coral. Our study examines the spatial and temporal dynamics of this alarm odour-nullifying effect, and which substratum types may be responsible. Field experiments showed that settlement-stage damselfish were not able to detect alarm odours within 2 m downcurrent of degraded coral, and that the antipredator response was re-established 20–40 min after transferral to live coral. Laboratory experiments indicate that the chemicals from common components of the degraded habitats, the cyanobacteria, Okeania sp., and diatom, Pseudo-nitzschia sp.prevented an alarm odour response. The same nullifying effect was found for the common red algae, Galaxauria robusta, suggesting that the problem is of a broader nature than previously realised. Those fish species best able to compensate for a lack of olfactory risk information at key times will be those potentially most resilient to the effects of coral degradation that operate through this mechanism.
Motor cortical activity changes during neuroprosthetic-controlled object interaction
Authors: Downey John E. , Brane Lucas , Gaunt Robert A. , Tyler-Kabara Elizabeth C. , Boninger Michael L. , Collinger Jennifer L. 
Published: November 2017

AbstractBrain-computer interface (BCI) controlled prosthetic arms are being developed to restore function to people with upper-limb paralysis. This work provides an opportunity to analyze human cortical activity during complex tasks. Previously we observed that BCI control became more difficult during interactions with objects, although we did not quantify the neural origins of this phenomena. Here, we investigated how motor cortical activity changed in the presence of an object independently of the kinematics that were being generated using intracortical recordings from two people with tetraplegia. After identifying a population-wide increase in neural firing rates that corresponded with the hand being near an object, we developed an online scaling feature in the BCI system that operated without knowledge of the task. Online scaling increased the ability of two subjects to control the robotic arm when reaching to grasp and transport objects. This work suggests that neural representations of the environment, in this case the presence of an object, are strongly and consistently represented in motor cortex but can be accounted for to improve BCI performance.
Microdroplet-based On-Demand Drawing of High Aspect-Ratio Elastomeric Micropillar and Its Contact Sensing Application
Authors: Li Qiang , Dhakal Rabin , Kim Jaeyoun 
Published: November 2017

AbstractHigh aspect-ratio elastomeric micropillars play important roles as the platform for microscale sensing and actuation. Many soft-lithographic techniques have been developed for their facile realization but most of the techniques are limited to build the micropillars only on totally flat, widely accessible substrate areas with the micropillar’s structural characteristics completely predetermined, leaving little room for in situ control. Here we demonstrate a new technique which overcomes these limitations by directly drawing micropillars from pipette-dispensed PDMS microdroplets using vacuum-chucked microspheres. The combined utilization of PDMS microdroplets and microspheres not only enables the realization of microsphere-tipped PDMS micropillars on non-flat, highly space-constrained substrate areas at in situ controllable heights but also allows arraying of micropillars with dissimilar heights at a close proximity. To validate the new technique’s utility and versatility, we realize PDMS micropillars on various unconventional substrate areas in various configurations. We also convert one of them, the optical fiber/micropillar hybrid, into a soft optical contact sensor. Both the fabrication technique and the resulting sensing scheme will be useful for future biomedical microsystems.
Attraction of Halyomorpha halys (Hemiptera: Pentatomidae) haplotypes in North America and Europe to baited traps
Authors: Morrison William R. , Milonas Panos , Kapantaidaki Despoina Evr. , Cesari Michele , Di Bella Emanuele , Guidetti Roberto , Haye Tim , Maistrello Lara , Moraglio Silvia T. , Piemontese Lucia , Pozzebon Alberto , Ruocco Giulia , Short Brent D. , Tavella Luciana , Vétek Gábor , Leskey Tracy C. 
Published: November 2017

AbstractHalyomorpha halysis a global invasive species, native to Southeast Asia, that is threatening agriculture in invaded regions. Our objectives were to: 1) establish the attractiveness of semiochemical stimuli paired with field-deployed traps in Europe (Greece, Hungary, Italy, and Switzerland), compared with Maryland, USA, and 2) identifyH. halyshaplotypes recovered from traps at each location. We found qualitatively identical patterns of capture between sites located across Europe and in Maryland, USA. In both regions, captures ofH. halysadults indicated a synergistic response to traps baited with the two componentH. halysaggregation pheromone, and pheromone synergist, methyl (2E, 4E, 6Z)-decatrienoate when compared with either individually. Haplotype diversity in Europe based on trapped specimens was much greater than the USA, with five new haplotypes described here, probably indicating ongoing invasion and re-introduction ofH. halys. By contrast, a single, previously identified haplotype was trapped in Maryland, USA, representing a single introduction. AllH. halyshaplotypes responded to each semiochemical in apparent proportion to their frequency in the overall population based on independently derived information from prior work. Taken together, these data suggest that pheromone-based technology will be of global utility for the monitoring of this important invasive species.
Disturbed blood flow worsens endothelial dysfunction in moderate-severe chronic obstructive pulmonary disease
Authors: Barak Otto F. , Mladinov Suzana , Hoiland Ryan L. , Tremblay Joshua C. , Thom Stephen R. , Yang Ming , Mijacika Tanja , Dujic Zeljko 
Published: November 2017

AbstractThe aims of this study were: (1) to test whether oscillatory shear stress further exacerbates endothelial dysfunction in patients with moderate-severe COPD, and (2) to test whether low flow oxygen administration improves endothelial function and is protective against oscillatory shear stress-induced endothelial dysfunction in patients with moderate-severe COPD. In 17 patients and 10 age-matched non-smoking control subjects we examined brachial artery flow-mediated dilation (FMD) and circulating microparticles before and after 20 minutes of experimentally-induced oscillatory shear stress. COPD patients performed this intervention a second time following a 20-minute wash in period of low flow supplemental oxygen to normalize arterial oxygen saturation. COPD patients had ~six-fold greater baseline retrograde shear rate (P < 0.05) and lower FMD (P < 0.05). The oscillatory shear stress intervention induced significant decreases in brachial artery FMD of all groups (P < 0.05). Oscillatory shear stress elevated circulating markers of endothelial cell apoptosis (CD31+/CD41b− microparticles) in COPD patients, but not age-matched controls. Supplemental oxygen administration abrogated the oscillatory shear stress-induced increase in CD31+/CD41b− microparticles, and improved FMD after accounting for the shear stress stimulus. We have demonstrated that acutely disturbed blood flow with increased retrograde shear stress further deteriorates the already impaired endothelial function with attendant endothelial apoptosis in patients with moderate-severe COPD.
Finite size effect on the structural and magnetic properties of MnAs/GaAs(001) patterned microstructures thin films
Authors: Mocuta Cristian , Bonamy Daniel , Stanescu Stefan , El Moussaoui Souliman , Barbier Antoine , Montaigne François , Maccherozzi Francesco , Bauer Ernst , Belkhou Rachid 
Published: November 2017

AbstractMnAs epitaxial thin films on GaAs(001) single crystalline substrates crystallize at room temperature (RT) in a mixture of two crystalline phases with distinct magnetic properties, organized as stripes along the MnAs [0001] direction. This particular morphology is driven by anisotropic epitaxial strain. We elucidate here the physical mechanisms at the origin of size reduction effect on the MnAs crystalline phase transition. We investigated the structural and magnetic changes in MnAs patterned microstructures (confined geometry) when the lateral dimension is reduced to values close to the periodicity and width of the stripes observed in continuous films. The effects of the microstructure’s lateral size, shape and orientation (with respect to the MnAs $$\mathrm{[11}\bar{2}\mathrm{0]}$$
[11

2
¯

0]
direction) were characterized by local probe synchrotron X-ray diffraction (μ-XRD) using a focused X-ray beam, X-ray Magnetic Circular Dichroïsm - Photo Emission Electron Microscopy (XMCD-PEEM) and Low Energy Electron Microscopy (LEEM). Changes in the transition temperature and the crystalline phase distribution inside the microstructures are evidenced and quantitatively measured. The effect of finite size and strain relaxation on the magnetic domain structure is also discussed. Counter-intuitively, we demonstrate here that below a critical microstructure size, bulk MnAs structural and magnetic properties are restored. To support our observations we developed, tested and validated a model based on the size-dependence of the elastic energy and strain relaxation to explain this phase re-distribution in laterally confined geometry.
Disulfide driven folding for a conditionally disordered protein
Authors: Fraga Hugo , Pujols Jordi , Gil-Garcia Marcos , Roque Alicia , Bernardo-Seisdedos Ganeko , Santambrogio Carlo , Bech-Serra Joan-Josep , Canals Francesc , Bernadó Pau , Grandori Rita , Millet Oscar , Ventura Salvador 
Published: November 2017

AbstractConditionally disordered proteins are either ordered or disordered depending on the environmental context. The substrates of the mitochondrial intermembrane space (IMS) oxidoreductase Mia40 are synthesized on cytosolic ribosomes and diffuse as intrinsically disordered proteins to the IMS, where they fold into their functional conformations; behaving thus as conditionally disordered proteins. It is not clear how the sequences of these polypeptides encode at the same time for their ability to adopt a folded structure and to remain unfolded. Here we characterize the disorder-to-order transition of a Mia40 substrate, the human small copper chaperone Cox17. Using an integrated real-time approach, including chromatography, fluorescence, CD, FTIR, SAXS, NMR, and MS analysis, we demonstrate that in this mitochondrial protein, the conformational switch between disordered and folded states is controlled by the formation of a single disulfide bond, both in the presence and in the absence of Mia40. We provide molecular details on how the folding of a conditionally disordered protein is tightly regulated in time and space, in such a way that the same sequence is competent for protein translocation and activity.
Transcranial direct current stimulation of the medial prefrontal cortex dampens mind-wandering in men
Authors: Bertossi Elena , Peccenini Ludovica , Solmi Andrea , Avenanti Alessio , Ciaramelli Elisa 
Published: November 2017

AbstractMind-wandering, the mind’s capacity to stray from external events and generate task-unrelated thought, has been associated with activity in the brain default network. To date, little is understood about the contribution of individual nodes of this network to mind-wandering. Here, we investigated the role of medial prefrontal cortex (mPFC) in mind-wandering, by perturbing this region with transcranial direct current stimulation (tDCS). Young healthy participants performed a choice reaction time task both before and after receiving cathodal tDCS over mPFC, and had their thoughts periodically sampled. We found that tDCS over mPFC - but not occipital or sham tDCS - decreased the propensity to mind-wander. The tDCS-induced reduction in mind-wandering occurred in men, but not in women, and was accompanied by a change in the content of task-unrelated though, which became more related to other people (as opposed to the self) following tDCS. These findings indicate that mPFC is crucial for mind-wandering, possibly by helping construction of self-relevant scenarios capable to divert attention inward, away from perceptual reality. Gender-related differences in tDCS-induced changes suggest that mPFC controls mind-wandering differently in men and women, which may depend on differences in the structural and functional organization of distributed brain networks governing mind-wandering, including mPFC.
The Role of Backbone Hydration of Poly(N-isopropyl acrylamide) Across the Volume Phase Transition Compared to its Monomer
Authors: Futscher Moritz H. , Philipp Martine , Müller-Buschbaum Peter , Schulte Alfons 
Published: November 2017

AbstractThermo-responsive polymers undergo a reversible coil-to-globule transition in water after which the chains collapse and aggregate into bigger globules when passing to above its lower critical solution temperature (LCST). The hydrogen bonding with the amide groups in the side chains has to be contrasted with the hydration interaction of the hydrophobic main-chain hydrocarbons. In the present investigation we study molecular changes in the polymer poly(N-isopropyl acrylamide) (PNIPAM) and in its monomer N-isopropyl acrylamide (NIPAM) in solution across the LCST transition. Employing Fourier-transform infrared spectroscopy we probe changes in conformation and hydrogen bonding. We observe a nearly discontinuous shift of the peak frequencies and areas of vibrational bands across the LCST transition for PNIPAM whereas NIPAM exhibits a continuous linear change with temperature. This supports the crucial role of the polymer backbone with respect to hydration changes in the amide group in combination with cooperative interactions of bound water along the backbone chain.
An in vitro assay to measure antibody-mediated inhibition of P. berghei sporozoite invasion against P. falciparum antigens
Authors: Rodríguez-Galán Ana , Salman Ahmed M. , Bowyer Georgina , Collins Katharine A. , Longley Rhea J. , Brod Florian , Ulaszewska Marta , Ewer Katie J. , Janse Chris J. , Khan Shahid M. , Hafalla Julius C. , Hill Adrian V. S. , Spencer Alexandra J. 
Published: November 2017

AbstractA large research effort is currently underway to find an effective and affordable malaria vaccine. Tools that enable the rapid evaluation of protective immune responses are essential to vaccine development as they can provide selection criteria to rank order vaccine candidates. In this study we have revisited the Inhibition of Sporozoite Invasion (ISI) assay to assess the ability of antibodies to inhibit sporozoite infection of hepatocytes. By using GFP expressing sporozoites of the rodent parasiteP.bergheiwe are able to robustly quantify parasite infection of hepatocyte cell lines by flow cytometry. In conjunction with recently produced transgenicP.bergheiparasites that expressP.falciparumsporozoite antigens, we have been able to use this assay to measure antibody mediated inhibition of sporozoite invasion against one of the lead malaria antigensP.falciparumCSP. By combining chimeric rodent parasites expressingP.falciparumantigens and a flow cytometric readout of infection, we are able to robustly assess vaccine-induced antibodies, from mice, rhesus macaques and human clinical trials, for their functional ability to block sporozoite invasion of hepatocytes.
Inhaled nicotine equivalent to cigarette smoking disrupts systemic and uterine hemodynamics and induces cardiac arrhythmia in pregnant rats
Authors: Shao Xuesi M. , López-Valdés Héctor E. , Liang Jing , Feldman Jack L. 
Published: November 2017

AbstractMaternal smoking with obligatory nicotine inhalation is associated with preterm delivery, low birth weight, fetal growth retardation and developmental defects. We tested the hypothesis that cigarette smoking-relevant nicotine inhalation during pregnancy impairs cardiovascular function and uterine hemodynamics with consequential fetal ischemia. Pregnant rats exposed to episodic inhaled nicotine via a novel lung alveolar region-targeted aerosol method produced nicotine pharmacokinetics resembling cigarette smoking in humans. This clinically relevant nicotine aerosol inhalation (NAI) induced transient reduction and irregular fluctuations in uterine artery blood flow associated with cardiac arrhythmia and high magnitude irregular fluctuations of systemic blood pressure. The arrhythmia included sinoatrial (SA) block, sinus arrest, 2° and 3° atrioventricular (A-V) block and supraventricular escape rhythm. These effects were blocked by the nicotinic acetylcholine receptor (nAChR) antagonist mecamylamine. Resection of the ovarian nerve, which innervates uterine blood vessels, counteracted the NAI-induced reduction in uterine blood flow. We suggest that the rapid rise pattern of arterial blood nicotine concentration stimulates and then desensitizes autonomic nAChRs leading to disruptions of cardiac function as well as systemic and uterine hemodynamics that reduces uteroplacental blood flow, a mechanism underlying maternal smoking-associated pregnancy complications and developmental disorders. These findings challenge the safety of pure nicotine inhalation, i.e., E-cigarettes.