bluuebunny/crossref_metadata_2025_split huggingface dataset:
Exchanges of genomic domains between poliovirus and other cocirculating species C enteroviruses reveal a high degree of plasticity
Authors: Bessaud Maël , Joffret Marie-Line , Blondel Bruno , Delpeyroux Francis 
Published: December 2016

AbstractThe attenuated Sabin strains contained in the oral poliomyelitis vaccine are genetically unstable, and their circulation in poorly immunized populations can lead to the emergence of pathogenic circulating vaccine-derived polioviruses (cVDPVs). The recombinant nature of most cVDPV genomes and the preferential presence of genomic sequences from certain cocirculating non-polio enteroviruses of species C (EV-Cs) raise questions about the permissiveness of genetic exchanges between EV-Cs and the phenotypic impact of such exchanges. We investigated whether functional constraints limited genetic exchanges between Sabin strains and other EV-Cs. We bypassed the natural recombination events by constructing 29 genomes containing a Sabin 2 capsid-encoding sequence and other sequences from Sabin 2 or from non-polio EV-Cs. Most genomes were functional. All recombinant viruses replicated similarly in vitro, but recombination modulated plaque size and temperature sensitivity. All viruses with a 5′UTR from Sabin 2 were attenuated in mice, whereas almost all viruses with a non-polio 5′UTR caused disease. These data highlight the striking conservation of functional compatibility between different genetic domains of cocirculating EV-Cs. This aspect is only one of the requirements for the generation of recombinant cVDPVs in natural conditions, but it may facilitate the generation of viable intertypic recombinants with diverse phenotypic features, including pathogenicity.
Effective energy harvesting from a single electrode based triboelectric nanogenerator
Authors: Kaur Navjot , Bahadur Jitendra , Panwar Vinay , Singh Pushpendra , Rathi Keerti , Pal Kaushik 
Published: December 2016

AbstractThe arch-shaped single electrode based triboelectric nanogenerator (TENG) is fabricated using thin film of reduced graphene oxide nanoribbons (rGONRs) with polyvinylidene fluoride (PVDF) polymer used as binder to effectively convert mechanical energy into electrical energy. The incorporation of rGONRs in PVDF polymer enhances average surface roughness of rGONRs/PVDF thin film. With the combination of the enhancement of average roughness and production of functional groups, which indicate improve charge storage capacity of prepared film. Furthermore, the redox peaks obtained through cyclic voltammetry were identified more in rGONRs/PVDF composite in comparison to pristine rGONRs to confirm charge transfer capability of film. Herein, the output performance was discussed experimentally as well as theoretically, maximum voltage was obtained to be 0.35 V. The newly designed TENG to harvest mechanical energy and opens up many new avenues of research in the energy harvesting applications.
Distinct Interactions between Fronto-Parietal and Default Mode Networks in Impaired Consciousness
Authors: Long Jinyi , Xie Qiuyou , Ma Qing , Urbin M. A. , Liu Liqing , Weng Ling , Huang Xiaoqi , Yu Ronghao , Li Yuanqing , Huang Ruiwang 
Published: December 2016

AbstractExisting evidence suggests that the default-mode network (DMN) and fronto-pariatal network (FPN) play an important role in altered states of consciousness. However, the brain mechanisms underlying impaired consciousness and the specific network interactions involved are not well understood. We studied the topological properties of brain functional networks using resting-state functional MRI data acquired from 18 patients (11 vegetative state/unresponsive wakefulness syndrome, VS/UWS, and 7 minimally conscious state, MCS) and compared these properties with those of healthy controls. We identified that the topological properties in DMN and FPN are anti-correlated which comes, in part, from the contribution of interactions between dorsolateral prefrontal cortex of the FPN and precuneus of the DMN. Notably, altered nodal connectivity strength was distance-dependent, with most disruptions appearing in long-distance connections within the FPN but in short-distance connections within the DMN. A multivariate pattern-classification analysis revealed that combination of topological patterns between the FPN and DMN could predict conscious state more effectively than connectivity within either network. Taken together, our results imply distinct interactions between the FPN and DMN, which may mediate conscious state.
Endotoxins are associated with visceral fat mass in type 1 diabetes
Authors: Lassenius Mariann I. , Ahola Aila J. , Harjutsalo Valma , Forsblom Carol , Groop Per-Henrik , Lehto Markku 
Published: December 2016

AbstractBacterial lipopolysaccharides (LPS), potent inducers of inflammation, have been associated with chronic metabolic disturbances. Obesity is linked to dyslipidemia, increased body adiposity, and endotoxemia. We investigated the cross-sectional relationships between serum LPS activity and body adiposity as well as inflammation in 242 subjects with type 1 diabetes. Body fat distribution was measured by DXA and serum LPS activity by the limulus amebocyte lysate end-point assay. Since no interaction between visceral fat mass and sex was observed, data were pooled for the subsequent analyses. LPS was independently associated with visceral fat mass, when adjusted for traditional risk factors (age, sex, kidney status, hsCRP, insulin sensitivity). In the multivariate analysis, serum LPS activity and triglyceride concentrations had a joint effect on visceral fat mass, independent of these factors alone. A combination of high LPS and high hsCRP concentrations was also observed in those with the largest visceral fat mass. In conclusion, high serum LPS activity levels were associated with visceral fat mass in subjects with type 1 diabetes strengthening its role in the development of central obesity, inflammation and insulin resistance.
Differential transcription profiles of long non-coding RNAs in primary human brain microvascular endothelial cells in response to meningitic Escherichia coli
Authors: Yang Ruicheng , Huang Fei , Fu Jiyang , Dou Beibei , Xu Bojie , Miao Ling , Liu Wentong , Yang Xiaopei , Tan Chen , Chen Huanchun , Wang Xiangru 
Published: December 2016

AbstractAccumulating studies have indicated the influence of long non-coding RNAs (lncRNAs) on various biological processes as well as disease development and progression. However, the lncRNAs involved in bacterial meningitis and their regulatory effects are largely unknown. By RNA-sequencing, the transcriptional profiles of host lncRNAs in primary human brain microvascular endothelial cells (hBMECs) in response to meningiticEscherichia coliwere demonstrated. Here, 25,257 lncRNAs were identified, including 24,645 annotated lncRNAs and 612 newly found ones. A total of 895 lncRNAs exhibited significant differences upon infection, among which 382 were upregulated and 513 were downregulated (≥2-fold,p < 0.05). Via bioinformatic analysis, the features of these lncRNAs, their possible functions, and the potential regulatory relationships between lncRNAs and mRNAs were predicted. Moreover, we compared the transcriptional specificity of these differential lncRNAs among hBMECs, human astrocyte cell U251, and human umbilical vein endothelial cells, and demonstrated the novel regulatory effects of proinflammatory cytokines on these differential lncRNAs. To our knowledge, this is the first time the transcriptional profiles of host lncRNAs involved inE. coli-induced meningitis have been reported, which shall provide novel insight into the regulatory mechanisms behind bacterial meningitis involving lncRNAs, and contribute to better prevention and therapy of CNS infection.
OnabotulinumtoxinA Urethral Sphincter Injection as Treatment for Non-neurogenic Voiding Dysfunction – A Randomized, Double-Blind, Placebo-Controlled Study
Authors: Jiang Yuan-Hong , Wang Chung-Cheng , Kuo Hann-Chorng 
Published: December 2016

AbstractNon-neurogenic voiding dysfunction including dysfunctional voiding and detrusor underactivity caused by a spastic or non-relaxing external urethral sphincter can theoretically be treated by injections of botulinum A toxin into the external urethral sphincter. This randomized, double-blind, placebo-controlled trial was designed to determine the clinical efficacy of onabotulinumtoxinA urethral sphincter injections in patients with dysfunctional voiding or detrusor underactivity. Patients with medically refractory dysfunctional voiding (n = 31) or detrusor underactivity (n = 31) were randomly allocated in a 2:1 ratio to receive either onabotulinumtoxinA (100 U) (n = 38) or placebo (normal saline) (n = 24). There were no significant differences in subjective or objective parameters between patients who received onabotulinumtoxinA and those who received saline injection therapy, and the overall success rate was 43.5% (reduction in Patient perception of Bladder Condition by ≥2: onabotulinumtoxinA 36.8% vs placebo 54.2%, p = 0.114). The results were similar between the dysfunctional voiding and detrusor underactivity subgroups; however, a significant reduction in detrusor voiding pressure was only observed in dysfunctional voiding patients who received onabotulinumtoxinA. Repeat urethral sphincter onabotulinumtoxinA injections offered greater therapeutic effects in both dysfunctional voiding and detrusor underactivity patients. For patients with non-neurogenic voiding dysfunction, the success rate of onabotulinumtoxinA urethral sphincter injection was not superior to placebo.
Preparation of Hollow Fe2O3 Nanorods and Nanospheres by Nanoscale Kirkendall Diffusion, and Their Electrochemical Properties for Use in Lithium-Ion Batteries
Authors: Cho Jung Sang , Park Jin-Sung , Kang Yun Chan 
Published: December 2016

AbstractA novel process for the preparation of aggregate-free metal oxide nanopowders with spherical (0D) and non-spherical (1D) hollow nanostructures was introduced. Carbon nanofibers embedded with iron selenide (FeSe) nanopowders with various nanostructures are prepared via the selenization of electrospun nanofibers. Ostwald ripening occurs during the selenization process, resulting in the formation of a FeSe-C composite nanofiber exhibiting a hierarchical structure. These nanofibers transform into aggregate-free hollow Fe2O3 powders via the complete oxidation of FeSe and combustion of carbon. Indeed, the zero- (0D) and one-dimensional (1D) FeSe nanocrystals transform into the hollow-structured Fe2O3 nanopowders via a nanoscale Kirkendall diffusion process, thus conserving their overall morphology. The discharge capacities for the 1000th cycle of the hollow-structured Fe2O3 nanopowders obtained from the FeSe-C composite nanofibers prepared at selenization temperatures of 500, 800, and 1000 °C at a current density of 1 A g−1 are 932, 767, and 544 mA h g−1, respectively; and their capacity retentions from the second cycle are 88, 92, and 78%, respectively. The high structural stabilities of these hollow Fe2O3 nanopowders during repeated lithium insertion/desertion processes result in superior lithium-ion storage performances.
Downregulation of peroxiredoxin-3 by hydrophobic bile acid induces mitochondrial dysfunction and cellular senescence in human trophoblasts
Authors: Wu Wei-Bin , Menon Ramkumar , Xu Yue-Ying , Zhao Jiu-Ru , Wang Yan-Lin , Liu Yuan , Zhang Hui-Juan 
Published: December 2016

AbstractIntrahepatic cholestasis of pregnancy (ICP) is a pregnancy-specific disorder characterised by raised bile acids in foetal-maternal circulation, which threatens perinatal health. During the progression of ICP, the effect of oxidative stress is underscored. Peroxiredoxin-3 (PRDX3) is a mitochondrial antioxidant enzyme that is crucial to balance intracellular oxidative stress. However, the role of PRDX3 in placental trophoblast cells under ICP is not fully understood. We demonstrated that the level of PRDX3 was downregulated in ICP placentas as well as bile acids–treated trophoblast cells and villous explant in vitro. Toxic levels of bile acids and PRDX3 knockdown induced oxidative stress and mitochondrial dysfunction in trophoblast cells. Moreover, silencing of PRDX3 in trophoblast cell line HTR8/SVneo induced growth arrest and cellular senescence via activation of p38-mitogen-activated protein kinase (MAPK) and induction of p21WAF1/CIP and p16INK4A. Additionally, enhanced cellular senescence, determined by senescence-associated beta-galactosidase staining, was obviously attenuated by p38-MAPK inhibitor SB203580. Our data determined that exposure to bile acid decreased PRDX3 level in human trophoblasts. PRDX3 protected trophoblast cells against mitochondrial dysfunction and cellular senescence induced by oxidative stress. Our results suggest that decreased PRDX3 by excessive bile acids in trophoblasts plays a critical role in the pathogenesis and progression of ICP.
Ester-Modified Cyclometalated Iridium(III) Complexes as Mitochondria-Targeting Anticancer Agents
Authors: Wang Fang-Xin , Chen Mu-He , Hu Xiao-Ying , Ye Rui-Rong , Tan Cai-Ping , Ji Liang-Nian , Mao Zong-Wan 
Published: December 2016

AbstractOrganometallic iridium complexes are potent anticancer candidates which act through different mechanisms from cisplatin-based chemotherapy regimens. Here, ten phosphorescent cyclometalated iridium(III) complexes containing 2,2′-bipyridine-4,4′-dicarboxylic acid and its diester derivatives as ligands are designed and synthesized. The modification by ester group, which can be hydrolysed by esterase, facilitates the adjustment of drug-like properties. The quantum yields and emission lifetimes are influenced by variation of the ester substituents on the Ir(III) complexes. The cytotoxicity of these Ir(III) complexes is correlated with the length of their ester groups. Among them, 4a and 4b are found to be highly active against a panel of cancer cells screened, including cisplatin-resistant cancer cells. Mechanism studies in vitro indicate that they undergo hydrolysis of ester bonds, accumulate in mitochondria, and induce a series of cell-death related events mediated by mitochondria. Furthermore, 4a and 4b can induce pro-death autophagy and apoptosis simultaneously. Our study indicates that ester modification is a simple and feasible strategy to enhance the anticancer potency of Ir(III) complexes.
Effect of acute pesticide exposure on bee spatial working memory using an analogue of the radial-arm maze
Authors: Samuelson Elizabeth E. W. , Chen-Wishart Zachary P. , Gill Richard J. , Leadbeater Ellouise 
Published: December 2016

AbstractPesticides, including neonicotinoids, typically target pest insects by being neurotoxic. Inadvertent exposure to foraging insect pollinators is usually sub-lethal, but may affect cognition. One cognitive trait, spatial working memory, may be important in avoiding previously-visited flowers and other spatial tasks such as navigation. To test this, we investigated the effect of acute thiamethoxam exposure on spatial working memory in the bumblebee Bombus terrestris, using an adaptation of the radial-arm maze (RAM). We first demonstrated that bumblebees use spatial working memory to solve the RAM by showing that untreated bees performed significantly better than would be expected if choices were random or governed by stereotyped visitation rules. We then exposed bees to either a high sub-lethal positive control thiamethoxam dose (2.5 ng−1 bee), or one of two low doses (0.377 or 0.091 ng−1) based on estimated field-realistic exposure. The high dose caused bees to make more and earlier spatial memory errors and take longer to complete the task than unexposed bees. For the low doses, the negative effects were smaller but statistically significant, and dependent on bee size. The spatial working memory impairment shown here has the potential to harm bees exposed to thiamethoxam, through possible impacts on foraging efficiency or homing.
Longitudinal, observational study on associations between postoperative nutritional vitamin D supplementation and clinical outcomes in esophageal cancer patients undergoing esophagectomy
Authors: Wang Lu , Wang Cong , Wang Jiangfeng , Huang Xiaochen , Cheng Yufeng 
Published: December 2016

AbstractVitamin D can exert anticancer effect beyond bone and calcium metabolism. We aimed to investigate whether postoperative vitamin D supplementation affects quality of life (QOL) and survival in esophageal cancer (EC) patients. We utilized the widely used EORTC QLQ-C30 and QLQ-OES18 to assess QOL at EC diagnosis and 24 months after surgery. Generalized estimating equations (GEEs) were used to analysis the association of vitamin D supplement use with QOL. Kaplan-Meier method and Cox regression model were used to evaluate the prognostic value of vitamin D supplementation. The notably improved QOL were found among vitamin D supplementation users compared with non-users (p < 0.05). Kaplan-Meier analysis revealed that vitamin D supplement use was significantly associated with improved disease-free survival (DFS) (p = 0.030), but not related to overall survival (OS) (p = 0.303). The multivariable analysis further demonstrated vitamin D supplement use as an independent prognostic factor for DFS (p = 0.040; HR 0.610; 95% CI 0.381–0.978). In conclusion, these results showed that vitamin D supplement use could serve as a promising intervention to enhancing QOL and prolonging DFS in EC.
Coupling the normal incident light into waveguide modes of DBR mirrors via a diffraction grating
Authors: Yang Wenhong , Sun Shang , Zhang Chen , Li Jiankai , Duan Zonghui , Song Qinghai , Xiao Shumin 
Published: December 2016

AbstractHere we numerically and experimentally demonstrate the conversion of normally incident light into the guiding modes of distributed Bragg reflector (DBRs) mirror. By fabricating a gold grating onto a 7.5 pairs TiO2/SiO2 DBR mirror, a series of asymmetrical resonances have been formed at the bandgap range of the DBR mirror. The detailed numerical calculations show that these Fano resonances are attributed to the coupling of incident waves into guiding modes of the DBR mirror. Compared with the other resonances, this coupling mechanism can be simply realized and it has also been revealed to be quite robust to the environmental changes, making the conversion between propagating waves and guiding waves to be practically interesting for many applications.
Multi-resolution community detection in massive networks
Authors: Han Jihui , Li Wei , Deng Weibing 
Published: December 2016

AbstractAiming at improving the efficiency and accuracy of community detection in complex networks, we proposed a new algorithm, which is based on the idea that communities could be detected from subnetworks by comparing the internal and external cohesion of each subnetwork. In our method, similar nodes are firstly gathered into meta-communities, which are then decided to be retained or merged through a multilevel label propagation process, until all of them meet our community criterion. Our algorithm requires neither any priori information of communities nor optimization of any objective function. Experimental results on both synthetic and real-world networks show that, our algorithm performs quite well and runs extremely fast, compared with several other popular algorithms. By tuning a resolution parameter, we can also observe communities at different scales, so this could reveal the hierarchical structure of the network. To further explore the effectiveness of our method, we applied it to the E-Coli transcriptional regulatory network, and found that all the identified modules have strong structural and functional coherence.
A novel pleuromutilin antibacterial compound, its binding mode and selectivity mechanism
Authors: Eyal Zohar , Matzov Donna , Krupkin Miri , Paukner Susanne , Riedl Rosemarie , Rozenberg Haim , Zimmerman Ella , Bashan Anat , Yonath Ada 
Published: December 2016

AbstractThe increasing appearance of pathogenic bacteria with antibiotic resistance is a global threat. Consequently, clinically available potent antibiotics that are active against multidrug resistant pathogens are becoming exceedingly scarce. Ribosomes are a main target for antibiotics, and hence are an objective for novel drug development. Lefamulin, a semi-synthetic pleuromutilin compound highly active against multi-resistant pathogens, is a promising antibiotic currently in phase III trials for the treatment of community-acquired bacterial pneumonia in adults. The crystal structure of the Staphylococcus aureus large ribosomal subunit in complex with lefamulin reveals its protein synthesis inhibition mechanism and the rationale for its potency. In addition, analysis of the bacterial and eukaryotes ribosome structures around the pleuromutilin binding pocket has elucidated the key for the drug’s selectivity.
Complementary Log Regression for Sufficient-Cause Modeling of Epidemiologic Data
Authors: Lin Jui-Hsiang , Lee Wen-Chung 
Published: December 2016

AbstractThe logistic regression model is the workhorse of epidemiological data analysis. The model helps to clarify the relationship between multiple exposures and a binary outcome. Logistic regression analysis is readily implemented using existing statistical software, and this has contributed to it becoming a routine procedure for epidemiologists. In this paper, the authors focus on a causal model which has recently received much attention from the epidemiologic community, namely, the sufficient-component cause model (causal-pie model). The authors show that the sufficient-component cause model is associated with a particular ‘link’ function: the complementary log link. In a complementary log regression, the exponentiated coefficient of a main-effect term corresponds to an adjusted ‘peril ratio’, and the coefficient of a cross-product term can be used directly to test for causal mechanistic interaction (sufficient-cause interaction). The authors provide detailed instructions on how to perform a complementary log regression using existing statistical software and use three datasets to illustrate the methodology. Complementary log regression is the model of choice for sufficient-cause analysis of binary outcomes. Its implementation is as easy as conventional logistic regression.
Semen preparation methods and sperm telomere length: density gradient centrifugation versus the swim up procedure
Authors: Zhao Feifei , Yang Qingling , Shi Senlin , Luo Xiaoyan , Sun Yingpu 
Published: December 2016

AbstractPrevious studies have shown that both density gradient centrifugation (DGC) and swim up (SU) procedures can select spermatozoa with longer telomeres for assisted reproduction techniques (ART). However, it is unknown which approach is more effective. The aim of the present study was to compare the effects of these two methods on sperm telomere length (STL). A total of 150 normozoospermic subjects were recruited. STL, DNA fragmentation index (DFI), reactive oxygen species (ROS) content and progressive motility of semen samples were detected before and after the procedures of DGC and SU. When compared to raw semen, the average length of sperm telomeres was significantly longer after the two sperm preparation methods. However, no significant difference was found between the DGC and SU procedures. We also found that semen prepared by the two methods had lower DNA fragmentation, ROS content and sperm progressive motility. However, no significant difference was found in those parameters between the two procedures. This is the first study that compares the effects of the DGC and SU procedures on STL, and the results show that both methods can recover a sperm population with longer STL and better DNA integrity for ART.