bluuebunny/crossref_metadata_2025_split huggingface dataset:
OH as a Probe of The Milky Way's Hidden Gas: First Results from SPLASH
Authors: Dawson J. R. , Walsh A. J. ,   The SPLASH Team
Published: September 2016

AbstractSPLASH (the Southern Parkes Large-Area Survey in Hydroxyl) is a deep survey of ground-state OH absorption and emission from the Galactic Plane, as well as an unbiased search for OH masers. Key early results include the detection of a rich and complex distribution of diffuse, optically thin OH with strongly non-thermal excitation temperatures, and the detection of numerous new maser sources. The survey aims to use OH as a probe of CO-dark H2 ISM Galactic scales, with future plans including comprehensive comparisons with CO and Hi, as well as non-LTE excitation modelling of the four ground-state lines.
A Green Bank Telescope Search for Highly Extended HI Disks Around Spiral Galaxies
Authors: Ford H. Alyson , Bregman Joel N. 
Published: September 2016

AbstractRecent UV absorption line studies suggest that a large fraction of missing baryons are in the warm ionized and neutral phases, with about half of Milky Way-mass galaxies containing absorption systems with HI column densities of 1018 cm−2 or greater. This HI gas, which would have been difficult to detect with previous instruments, could be a significant contributor to the missing baryons. The Green Bank Telescope (GBT) presents a unique opportunity to detect this emission. We present results from GBT 21 cm observations of a sample of ten nearby optically luminous spirals, which reveal extended HI gas in half of our sample. The column densities of this extended HI are typically ~ 1 × 1019 cm−2, as measured at distances of 100 kpc from the center of the galaxies.
A Global View of Molecule-Forming Clouds in the Galaxy
Authors: Gibson Steven J. , Howard Ward S. , Jolly Christian S. , Newton Jonathan H. , Bell Aaron C. , Spraggs Mary E. , Hughes J. Marcus , Tagliaboschi Aaron M. , Brunt Christopher M. , Taylor A. Russell , Stil Jeroen M. , Dame Thomas M. 
Published: September 2016

AbstractWe have mapped cold atomic gas in 21cm line H i self-absorption (HISA) at arcminute resolution over more than 90% of the Milky Way's disk. To probe the formation of H2 clouds, we have compared our HISA distribution with CO J = 1-0 line emission. Few HISA features in the outer Galaxy have CO at the same position and velocity, while most inner-Galaxy HISA has overlapping CO. But many apparent inner-Galaxy HISA-CO associations can be explained as chance superpositions, so most inner-Galaxy HISA may also be CO-free. Since standard equilibrium cloud models cannot explain the very cold H i in many HISA features without molecules being present, these clouds may instead have significant CO-dark H2.
Investigating formation of isolated intermediate/massive YSOs in the LMC
Authors: Harada Ryohei , Onishi Toshikazu , Hughes Annie , Meixner Margaret , Sewilo Marta , Indebetouw Remy , Nayak Omnarayani , Tokuda Kazuki , Morioka Yuuki , Fukui Yasuo , Kawamura Akiko , Wong Tony , Bernard Jean-Philippe 
Published: September 2016

AbstractHigh-mass stars usually form in giant molecular clouds (GMCs) as part of a young stellar cluster, but some isolated O/B stars are observed. What are the initial conditions that lead to the formation of these objects? The aim of this study is to measure the distribution and basic physical properties of the neutral gas associated with isolated intermediate- and high-mass young stellar objects (YSOs) in the Large Magellanic Cloud.As part of the SAGE Spitzer Legacy program for the LMC, we have identified and confirmed YSOs using Spitzer IRAC photometry and IRS spectroscopy. By examining the spatial coincidence between the YSOs and 12CO(1–0) emission detected by the NANTEN mapping survey, we identified more than one hundred intermediate/massive YSOs in the LMC that appear to be isolated, i.e. not associated with CO emission. Deeper follow-up CO observations by our team with the higher resolution by Mopra Telescope (beam=30”) detected CO emission at the YSO positions for ~80% of the isolated LMC YSOs. We obtained ALMA data of some of the targets during Cycle 2. We targeted a small but representative (in terms of their association with neutral gas tracers) sample of the isolated high-mass YSOs that we have been studying in the LMC. All of our 12 targets are separated by more than 200 pc from known CO clouds. Our analysis of the ALMA data shows that a compact molecular cloud whose mass is a few thousand solar masses or smaller is associated with most of the YSOs.
The Real Solar Neighborhood Protostars
Authors: Heiderman Amanda L. , Evans Neal J. 
Published: September 2016

AbstractCharacterization of how dense molecular cores evolve into stars has historically been made through observational changes in their 2 to 25 μm spectral energy distribution (SED) or bolometric temperature via the Class system. Linking these observational classes to a physical protostellar phase or Stages in a consistent manner remains challenging. In order to provide a uniform indicator of whether an observationally classified embedded protostar candidate is likely to be a physical phase Stage 0 or I protostar, we performed an HCO+(J=3-2) survey of Class 0+I and Flat SED young stellar objects (YSOs) in the Spitzer nearby (D < 500 pc) Gould Belt cloud surveys. We use criteria from van Kempen et al.(2009) to classify sources as Stage 0+I or bona fide protostars and find 84% of our HCO+ detected sources meet that criteria. We recommend 0.54 Myr as an evolutionary timescale for these embedded protostars. We discuss trends in our sample with spatial distribution, molecular cloud extinction, spectral index, and bolometric temperature and luminosity.
Results from the Herschel Gould Belt Survey in the Ophiuchus Main Cloud
Authors: Ladjelate Bilal , André Philippe , Könyves Vera , Men'shchikov Alexander ,   the HGBS team
Published: September 2016

AbstractAs part of the Herschel Gould Belt Survey (HGBS), the Ophiuchus molecular cloud was imaged in the submillimeter range. Here, we summarize and briefly discuss the main results.
The HerMES Local Luminosity Function
Authors: Marchetti Lucia , Vaccari Mattia , Franceschini Alberto 
Published: September 2016

AbstractWe exploit the Herschel Extragalactic Multi-Tiered Survey (HerMES) dataset along with ancillary multi-wavelength photometry and spectroscopy from the Spitzer Data Fusion to provide the most accurate determination to date of the local (0.02<z<0.5) Far-Infrared Luminosity and Star Formation Rate Function. We present and compare our results with model predictions as well as other multi-wavelength estimates of the local star formation rate density.
The Herschel Point Source Catalogue
Authors: Marton G. , Schulz B. , Altieri B. , Calzoletti L. , Kiss Cs. , Lim T. , Lu N. , Paladini R. , Papageorgiou A. , Pearson C. , Rector J. , Shupe D. , Valtchanov I. , Verebélyi E. , Xu K. 
Published: September 2016

AbstractThe Herschel Space Observatory was the fourth cornerstone mission in the European Space Agency (ESA) science programme with excellent broad band imaging capabilities in the sub-mm and far-infrared part of the spectrum. Although the spacecraft finished its observations in 2013, it left a large legacy dataset that is far from having been fully scrutinised and still has a large potential for new scientific discoveries. This is specifically true for the photometric observations of the PACS and SPIRE instruments. Some source catalogues have already been produced by individual observing programs, but there are many observations that risk to remain unexplored. To maximise the science return of the SPIRE and PACS data sets, we are in the process of building the Herschel Point Source Catalogue (HPSC) from all primary and parallel mode observations. Our homogeneous source extraction enables a systematic and unbiased comparison of sensitivity across the different Herschel fields that single programs will generally not be able to provide. The catalogue will be made available online through archives like the Herschel Science Archive (HSA), the Infrared Science Archive (IRSA), and the Strasbourg Astronomical Data Center (CDS).
Mass–metallicity relation for AKARI-FMOS infrared luminous galaxies at z ~ 0.9
Authors: Oi Nagisa , Matsuhara Hideo , Goto Tomotsugu , Pearson Chris , Buat Véronique , Malkan Matthew A. 
Published: September 2016

AbstractWe study the mass–metallicity relation and fundamental relation (FMR) for infrared bright galaxies (IR galaxies) at z ~ 0.9 discovered by AKARI NEP-Deep survey. The main result of this work is that metallicity of IR galaxies surprisingly match optical selected galaxies at a given mass even their star formation rates are different, which may imply that optical and IR selected galaxies follow similar star formation histories, and the starbursts in the IR galaxies do not give a strong impact in changing metallicity because of the short duration time.
A Full Virial Analysis of the Prestellar Cores in the Ophiuchus Molecular Cloud
Authors: Pattle Kate , Ward-Thompson Derek 
Published: September 2016

AbstractWe use SCUBA-2, HARP C18O J= 3 → 2, Herschel and IRAM N2H+ J= 1 → 0 observations of the Ophiuchus molecular cloud to identify and characterise the properties of the starless cores in the region. The SCUBA-2, HARP and Herschel data were taken as part of the JCMT and Herschel Gould Belt Surveys. We determine masses and temperatures and perform a full virial analysis on our cores, and find that our cores are all either bound or virialised, with gravitational energy and external pressure energy on average of similar importance in confining the cores. There is wide variation from region to region, with cores in the region influenced by B stars (Oph A) being substantially gravitationally bound, and cores in the most quiescent region (Oph C) being pressure-confined. We observe dissipation of turbulence in all our cores, and find that this dissipation is more effective in regions which do not contain outflow-driving protostars. Full details of this analysis are presented by Pattle et al. (2015).
Multiphase ISM in low luminosity radio galaxies: A case study of NGC 708
Authors: Sahu Sheetal K , Pandey S K , Chaware L , Pandge M B 
Published: September 2016

AbstractWe present a multi-wavelength study of a nearby radio loud elliptical galaxy NGC 708, selected from the Bologna B2 sample of radio galaxies. We obtained optical broad band and narrow images from IGO 2m telescope (Pune, India). We supplement the multi-wavelength coverage of the observation by using X-ray data from Chandra, infrared data from 2MASS, Spitzer and WISE and optical image from DSS and HST. In order to investigate properties of interstellar medium, we have generated unsharp-masked, color, residual, quotient, dust extinction, Hα emission maps. From the derived maps it is evident that cool gas, dust, warm ionized Hα and hot X-ray gas are spatially associated with each other. We investigate the inner and outer photometric and kinematic properties of the galaxy using surface brightness profiles. From X-ray 2d beta model, unsharp masking, surface brightness profiles techniques, it is evident that pair of X-ray cavities are present in this system and which are ~5.6 Kpc away from the central X-ray source.
Molecular Gas Excitation and Chemistry in VV 114 and NGC 1614 with ALMA
Authors: Saito Toshiki , Iono Daisuke , Ueda Junko , Yun Min S. , Nakanishi Kouichiro , Sugai Hajime , Imanishi Masatoshi , Hagiwara Yoshiaki , Kaneko Hiroyuki , Motohara Kentaro , Espada Daniel , Yamashita Takuji , Lee Minju , Michiyama Tomonari , Kawabe Ryohei 
Published: September 2016

AbstractWe present high resolution molecular line observations of dusty AGN and starburst in nearby luminous infrared galaxies (LIRGs), VV 114 (band 3/4/7) and NGC 1614 (band 3/6/7/9), with ALMA. Multi-frequency imaging from 4.8 GHz to 691 GHz of NGC 1614 allows us to study spatial properties of the radio-to-FIR continuum and multiple CO transitions, and we find the CO excitation up to Jupp = 6 can be explained by a single ISM model powered by nuclear starbursts. Our processing line imaging survey for VV 114 detected at least 30 molecular lines which show different chemical composition from region to region. Multi-molecule imaging helps us to diagnose the chemical differences of dusty ISM, while multi-transition imaging allows us to investigate gas physical conditions affected by nuclear activities directly.
ALMA Observations of a High-density Core in Taurus: Dynamical Gas Interaction at the Possible Site of a Multiple Star Formation
Authors: Tokuda Kazuki , Onishi Toshikazu , Saigo Kazuya , Kawamura Akiko , Fukui Yasuo , Matsumoto Tomoaki , Inutsuka Shu-ichiro , Machida Masahiro N. , Tomida Kengo , Tachihara Kengo 
Published: September 2016

AbstractIt is crucially important to observe dense cores in order to investigate the initial condition of star formation since protostars are formed via dynamical collapse of dense cores, inhering the physical properties from their natal dense cores. Here we present the results of ALMA Cycle 0 and Cycle 1 observations of dust continuum emission and molecular rotational lines toward a dense core, MC27 (aka L1521F), which is considered to be very close to the first protostellar core phase. We revealed the spatial/velocity structures of the core are very complex and and suggest that the star formation is highly dynamical.
Star formation in Taurus Auriga Perseus and California nebulae
Authors: Tóth L. Viktor , Zahorecz Sarolta , Marton Gabor , Doi Yasuo , Onishi Toshikazu , Tokuda Kazuki 
Published: September 2016

AbstractStar formation and interstellar medium (ISM) structure were investigated in the Taurus, Auriga, Perseus and California (TAP) nearby star forming regions. Properties of the cold ISM was derived using AKARI FIR all sky maps, the Osaka-1.85m CO survey focusing to the all-sky Planck catalogue of Galactic Cold Clumps (PGCC). As many as 1041 infrared point sources were classified as young stellar object (YSO) based on multiband photometric data, and 384 of those are associated to a PGCC object. About 30% of the TAP PGCC clumps have associated YSOs.
Probing the magnetic field structure in the filamentary cloud IC5146
Authors: Wang Jia-Wei , Eswaraiah Chakali , Lai Shih-Ping , Clemens D. P. , Chen Wen-Ping , Pandey Anil K. 
Published: September 2016

AbstractIC5146 is one of the filamentary clouds observed in Herschel Gould Belt Survey. Here we present our polarization observations toward IC5146 taken with AIMPOL, TRIPOL and Mimir. Our results reveal that the large scale structure of magnetic field is well perpendicular to the main filament, but is likely parallel to the sub-filaments, which are structure extended out from the main filaments. We have also conducted CO observations to reveal the gas kinematics along the filaments or magnetic field; this result suggests the gas is possibly confined by magnetic field in most of the region until reaching supercritical. Based on our results, we suggests that at least four types of filaments can be found in IC5146, behaving different physical properties and consistent with different formation mechanisms. Our conclusions reveal that filaments are a combination of a variety types of objects.
Gravity Binding and Pressure Bounding of Hii regions and Molecular Clouds in Interacting Galaxies
Authors: Zaragoza-Cardiel J. , Beckman J. , Font J. , Camps-Fariña A. , Garcìa-Lorenzo B. , Serrano-Borlaff A. 
Published: September 2016

AbstractWe have observed 3 pairs of interacting galaxies (the Antennae, Arp 236, and NGC 1614) using the Fabry-Perot interferometer GHαFaS (Galaxy Hα Fabry-Perot system) on the 4.2m William Herschel Telescope (WHT) at the Observatorio del Roque de los Muchachos, La Palma. We have extracted the physical properties (sizes, Hα luminosity and velocity dispersion) of Hii regions. We have combined also these observations with ALMA archival observations of these interacting galaxies, finding that there is a set of brighter and denser star forming regions. We have been able to compare these properties with those of two SMGs at redshift ~ 2.
SU8 etch mask for patterning PDMS and its application to flexible fluidic microactuators
Authors: Gorissen Benjamin , Van Hoof Chris , Reynaerts Dominiek , De Volder Michael 
Published: September 2016

AbstractOver the past few decades, polydimethylsiloxane (PDMS) has become the material of choice for a variety of microsystem applications, including microfluidics, imprint lithography, and soft microrobotics. For most of these applications, PDMS is processed by replication molding; however, new applications would greatly benefit from the ability to pattern PDMS films using lithography and etching. Metal hardmasks, in conjunction with reactive ion etching (RIE), have been reported as a method for patterning PDMS; however, this approach suffers from a high surface roughness because of metal redeposition and limited etch thickness due to poor etch selectivity. We found that a combination of LOR and SU8 photoresists enables the patterning of thick PDMS layers by RIE without redeposition problems. We demonstrate the ability to etch 1.5-μm pillars in PDMS with a selectivity of 3.4. Furthermore, we use this process to lithographically process flexible fluidic microactuators without any manual transfer or cutting step. The actuator achieves a bidirectional rotation of 50° at a pressure of 200 kPa. This process provides a unique opportunity to scale down these actuators as well as other PDMS-based devices.
The Arabidopsis MIEL1 E3 ligase negatively regulates ABA signalling by promoting protein turnover of MYB96
Authors: Lee Hong Gil , Seo Pil Joon 
Published: September 2016

AbstractThe phytohormone abscisic acid (ABA) regulates plant responses to various environmental challenges. Controlled protein turnover is an important component of ABA signalling. Here we show that the RING-type E3 ligase MYB30-INTERACTING E3 LIGASE 1 (MIEL1) regulates ABA sensitivity by promoting MYB96 turnover in Arabidopsis. Germination of MIEL1-deficient mutant seeds is hypersensitive to ABA, whereas MIEL1-overexpressing transgenic seeds are less sensitive. MIEL1 can interact with MYB96, a regulator of ABA signalling, and stimulate its ubiquitination and degradation. Genetic analysis shows that MYB96 is epistatic to MIEL1 in the control of ABA sensitivity in seeds. While MIEL1 acts primarily via MYB96 in seed germination, MIEL1 regulates protein turnover of both MYB96 and MYB30 in vegetative tissues. We find that ABA regulates the expression of MYB30-responsive genes during pathogen infection and this regulation is partly dependent on MIEL1. These results suggest that MIEL1 may facilitate crosstalk between ABA and biotic stress signalling.
The Rho guanine nucleotide exchange factor ARHGEF5 promotes tumor malignancy via epithelial–mesenchymal transition
Authors: Komiya Y , Onodera Y , Kuroiwa M , Nomimura S , Kubo Y , Nam J-M , Kajiwara K , Nada S , Oneyama C , Sabe H , Okada M 
Published: September 2016

AbstractEpithelial tumor cells often acquire malignant properties, such as invasion/metastasis and uncontrolled cell growth, by undergoing epithelial–mesenchymal transition (EMT). However, the mechanisms by which EMT contributes to malignant progression remain elusive. Here we show that the Rho guanine nucleotide exchange factor (GEF) ARHGEF5 promotes tumor malignancy in a manner dependent on EMT status. We previously identified ARHGEF5, a member of the Dbl family of GEFs, as a multifunctional mediator of Src-induced cell invasion and tumor growth. In the present study, ARHGEF5 was upregulated during tumor growth factor-β-induced EMT in human epithelial MCF10A cells, and promoted cell migration by activating the Rho-ROCK pathway. ARHGEF5 was necessary for the invasive and in vivo metastatic activity of human colorectal cancer HCT116 cells. These findings underscore the crucial role of ARHGEF5 in cell migration and invasion/metastasis. An in vivo tumorigenesis assay revealed that ARHGEF5 had the potential to promote tumor growth via the phosphatidylinositol 3-kinase (PI3K) pathway. However, ARHGEF5 was not required for tumor growth in epithelial-like human colorectal cancer HCT116 and HT29 cells, whereas the growth of mesenchymal-like SW480 and SW620 cells depended on ARHGEF5. Induction of EMT by tumor necrosis factor-α or Slug in HCT116 cells resulted in the dependence of tumor growth on ARHGEF5. In these mesenchymal-like cells, Akt was activated via ARHGEF5 and its activity was required for tumor growth. Analysis of a transcriptome data set revealed that the combination of ARHGEF5 upregulation and E-cadherin downregulation or Snail upregulation was significantly correlated with poor prognosis in patients with colorectal cancers. Taken together, our findings suggest that EMT-induced ARHGEF5 activation contributes to the progression of tumor malignancy. ARHGEF5 may serve as a potential therapeutic target in a subset of malignant tumors that have undergone EMT.
Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus
Authors: Harr Bettina , Karakoc Emre , Neme Rafik , Teschke Meike , Pfeifle Christine , Pezer Željka , Babiker Hiba , Linnenbrink Miriam , Montero Inka , Scavetta Rick , Abai Mohammad Reza , Molins Marta Puente , Schlegel Mathias , Ulrich Rainer G. , Altmüller Janine , Franitza Marek , Büntge Anna , Künzel Sven , Tautz Diethard 
Published: September 2016

AbstractWild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory.
Inhibition of Drp1 mitochondrial translocation provides neural protection in dopaminergic system in a Parkinson’s disease model induced by MPTP
Authors: Filichia Emily , Hoffer Barry , Qi Xin , Luo Yu 
Published: September 2016

AbstractAccumulating evidence suggest mitochondria-mediated pathways play an important role in dopaminergic neuronal cell death in Parkinson’s disease (PD). Drp1, a key regulator of mitochondrial fission, has been shown to be activated and translocated to mitochondria under stress, leading to excessive mitochondria fission and dopaminergic neuronal death in vitro. However, whether Drp1 inhibition can lead to long term stable preservation of dopaminergic neurons in PD-related mouse models remains unknown. In this study, using a classical MPTP animal PD model, we showed for the first time Drp1 activation and mitochondrial translocation in vivo after MPTP administration. Inhibition of Drp1 activation by a selective peptide inhibitor P110, blocked MPTP-induced Drp1 mitochondrial translocation and attenuated dopaminergic neuronal loss, dopaminergic nerve terminal damage and behavioral deficits caused by MPTP. MPTP-induced microglial activation and astrogliosis were not affected by P110 treatment. Instead, inhibition of Drp1 mitochondrial translocation diminished MPTP-induced p53, BAX and PUMA mitochondrial translocation. This study demonstrates that inhibition of Drp1 hyperactivation by a Drp1 peptide inhibitor P110 is neuroprotective in a MPTP animal model. Our data also suggest that the protective effects of P110 treatment might be mediated by inhibiting the p53 mediated apoptotic pathways in neurons through inhibition of Drp1-dependent p53 mitochondrial translocation.