bluuebunny/crossref_metadata_2025_split huggingface dataset:
Seasonal variation in nifH abundance and expression of cyanobacterial communities associated with boreal feather mosses
Authors: Warshan Denis , Bay Guillaume , Nahar Nurun , Wardle David A , Nilsson Marie-Charlotte , Rasmussen Ulla 
Published: February 2016

Abstract
Dinitrogen (N2)-fixation by cyanobacteria living in symbiosis with pleurocarpous feather mosses (for example, Pleurozium schreberi and Hylocomium splendens) represents the main pathway of biological N input into N-depleted boreal forests. Little is known about the role of the cyanobacterial community in contributing to the observed temporal variability of N2-fixation. Using specific nifH primers targeting four major cyanobacterial clusters and quantitative PCR, we investigated how community composition, abundance and nifH expression varied by moss species and over the growing seasons. We evaluated N2-fixation rates across nine forest sites in June and September and explored the abundance and nifH expression of individual cyanobacterial clusters when N2-fixation is highest. Our results showed temporal and host-dependent variations of cyanobacterial community composition, nifH gene abundance and expression. N2-fixation was higher in September than June for both moss species, explained by higher nifH gene expression of individual clusters rather than higher nifH gene abundance or differences in cyanobacterial community composition. In most cases, ‘Stigonema cluster’ made up less than 29% of the total cyanobacterial community, but accounted for the majority of nifH gene expression (82–94% of total nifH expression), irrespective of sampling date or moss species. Stepwise multiple regressions showed temporal variations in N2-fixation being greatly explained by variations in nifH expression of the ‘Stigonema cluster’. These results suggest that Stigonema is potentially the most influential N2-fixer in symbiosis with boreal forest feather mosses.
Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents
Authors: Merlevede Jane , Droin Nathalie , Qin Tingting , Meldi Kristen , Yoshida Kenichi , Morabito Margot , Chautard Emilie , Auboeuf Didier , Fenaux Pierre , Braun Thorsten , Itzykson Raphael , de Botton Stéphane , Quesnel Bruno , Commes Thérèse , Jourdan Eric , Vainchenker William , Bernard Olivier , Pata-Merci Noemie , Solier Stéphanie , Gayevskiy Velimir , Dinger Marcel E. , Cowley Mark J. , Selimoglu-Buet Dorothée , Meyer Vincent , Artiguenave François , Deleuze Jean-François , Preudhomme Claude , Stratton Michael R. , Alexandrov Ludmil B. , Padron Eric , Ogawa Seishi , Koscielny Serge , Figueroa Maria , Solary Eric 
Published: February 2016

AbstractThe cytidine analogues azacytidine and 5-aza-2’-deoxycytidine (decitabine) are commonly used to treat myelodysplastic syndromes, with or without a myeloproliferative component. It remains unclear whether the response to these hypomethylating agents results from a cytotoxic or an epigenetic effect. In this study, we address this question in chronic myelomonocytic leukaemia. We describe a comprehensive analysis of the mutational landscape of these tumours, combining whole-exome and whole-genome sequencing. We identify an average of 14±5 somatic mutations in coding sequences of sorted monocyte DNA and the signatures of three mutational processes. Serial sequencing demonstrates that the response to hypomethylating agents is associated with changes in DNA methylation and gene expression, without any decrease in the mutation allele burden, nor prevention of new genetic alteration occurence. Our findings indicate that cytosine analogues restore a balanced haematopoiesis without decreasing the size of the mutated clone, arguing for a predominantly epigenetic effect.
Multiplexed pancreatic genome engineering and cancer induction by transfection-based CRISPR/Cas9 delivery in mice
Authors: Maresch Roman , Mueller Sebastian , Veltkamp Christian , Öllinger Rupert , Friedrich Mathias , Heid Irina , Steiger Katja , Weber Julia , Engleitner Thomas , Barenboim Maxim , Klein Sabine , Louzada Sandra , Banerjee Ruby , Strong Alexander , Stauber Teresa , Gross Nina , Geumann Ulf , Lange Sebastian , Ringelhan Marc , Varela Ignacio , Unger Kristian , Yang Fengtang , Schmid Roland M. , Vassiliou George S. , Braren Rickmer , Schneider Günter , Heikenwalder Mathias , Bradley Allan , Saur Dieter , Rad Roland 
Published: February 2016

AbstractMouse transgenesis has provided fundamental insights into pancreatic cancer, but is limited by the long duration of allele/model generation. Here we show transfection-based multiplexed delivery of CRISPR/Cas9 to the pancreas of adult mice, allowing simultaneous editing of multiple gene sets in individual cells. We use the method to induce pancreatic cancer and exploit CRISPR/Cas9 mutational signatures for phylogenetic tracking of metastatic disease. Our results demonstrate that CRISPR/Cas9-multiplexing enables key applications, such as combinatorial gene-network analysis, in vivo synthetic lethality screening and chromosome engineering. Negative-selection screening in the pancreas using multiplexed-CRISPR/Cas9 confirms the vulnerability of pancreatic cells to Brca2-inactivation in a Kras-mutant context. We also demonstrate modelling of chromosomal deletions and targeted somatic engineering of inter-chromosomal translocations, offering multifaceted opportunities to study complex structural variation, a hallmark of pancreatic cancer. The low-frequency mosaic pattern of transfection-based CRISPR/Cas9 delivery faithfully recapitulates the stochastic nature of human tumorigenesis, supporting wide applicability for biological/preclinical research.
Orbital two-channel Kondo effect in epitaxial ferromagnetic L10-MnAl films
Authors: Zhu L. J. , Nie S. H. , Xiong P. , Schlottmann P. , Zhao J. H. 
Published: February 2016

AbstractThe orbital two-channel Kondo effect displaying exotic non-Fermi liquid behaviour arises in the intricate scenario of two conduction electrons compensating a pseudo-spin-1/2 impurity of two-level system. Despite extensive efforts for several decades, no material system has been clearly identified to exhibit all three transport regimes characteristic of the two-channel Kondo effect in the same sample, leaving the interpretation of the experimental results a subject of debate. Here we present a transport study suggestive of a robust orbital two-channel Kondo effect in epitaxial ferromagnetic L10-MnAl films, as evidenced by a magnetic field-independent resistivity upturn with a clear transition from logarithmic- to square-root temperature dependence and deviation from it in three distinct temperature regimes. Our results also provide an experimental indication of the presence of two-channel Kondo physics in a ferromagnet, pointing to considerable robustness of the orbital two-channel Kondo effect even in the presence of spin polarization of the conduction electrons.
Local T/B cooperation in inflamed tissues is supported by T follicular helper-like cells
Authors: Vu Van Dana , Beier Katja C. , Pietzke Lea-Jean , Al Baz Maysun S. , Feist Randi K. , Gurka Stephanie , Hamelmann Eckard , Kroczek Richard A. , Hutloff Andreas 
Published: February 2016

AbstractAutoimmune diseases and other inflammatory conditions are characterized by large lymphocytic tissue infiltrates in which T and B cells can be found in close contact. Here, using a murine airway inflammation model, we compare antigen-specific T and B cells in lung tissue versus lung-draining lymph node. In the lung we identify a B-cell population exhibiting a classical germinal centre phenotype without being organized into ectopic lymphoid tissue. By contrast, classical CXCR5+ Bcl-6+ T follicular helper cells are not present. Nevertheless, lung-infiltrating T cells exhibit follicular helper-like properties including the potential to provide help to naive B cells. The lung tissue is also a survival niche for memory T and B cells remaining in residual peribronchial infiltrates after resolution of inflammation. Collectively, this study shows the importance of T/B cooperation not only in lymph nodes but also in inflamed peripheral tissues for local antibody responses to infection and autoimmunity.
On the tuning of electrical and thermal transport in thermoelectrics: an integrated theory–experiment perspective
Authors: Yang Jiong , Xi Lili , Qiu Wujie , Wu Lihua , Shi Xun , Chen Lidong , Yang Jihui , Zhang Wenqing , Uher Ctirad , Singh David J 
Published: February 2016

AbstractDuring the last two decades, we have witnessed great progress in research on thermoelectrics. There are two primary focuses. One is the fundamental understanding of electrical and thermal transport, enabled by the interplay of theory and experiment; the other is the substantial enhancement of the performance of various thermoelectric materials, through synergistic optimisation of those intercorrelated transport parameters. Here we review some of the successful strategies for tuning electrical and thermal transport. For electrical transport, we start from the classical but still very active strategy of tuning band degeneracy (or band convergence), then discuss the engineering of carrier scattering, and finally address the concept of conduction channels and conductive networks that emerge in complex thermoelectric materials. For thermal transport, we summarise the approaches for studying thermal transport based on phonon–phonon interactions valid for conventional solids, as well as some quantitative efforts for nanostructures. We also discuss the thermal transport in complex materials with chemical-bond hierarchy, in which a portion of the atoms (or subunits) are weakly bonded to the rest of the structure, leading to an intrinsic manifestation of part-crystalline part-liquid state at elevated temperatures. In this review, we provide a summary of achievements made in recent studies of thermoelectric transport properties, and demonstrate how they have led to improvements in thermoelectric performance by the integration of modern theory and experiment, and point out some challenges and possible directions.
Summer precipitation anomalies in Asia and North America induced by Eurasian non-monsoon land heating versus ENSO
Authors: Zhao Ping , Wang Bin , Liu Jiping , Zhou Xiuji , Chen Junming , Nan Sulan , Liu Ge , Xiao Dong 
Published: February 2016

AbstractWhen floods ravage Asian monsoon regions in summer, megadroughts often attack extratropical North America, which feature an intercontinental contrasting precipitation anomaly between Asia and North America. However, the characteristics of the contrasting Asian-North American (CANA) precipitation anomalies and associated mechanisms have not been investigated specifically. In this article, we firmly establish this summer CANA pattern, providing evidence for a significant effect of the land surface thermal forcing over Eurasian non-monsoon regions on the CANA precipitation anomalies by observations and numerical experiments. We show that the origin of the CANA precipitation anomalies and associated anomalous anticyclones over the subtropical North Pacific and Atlantic has a deeper root in Eurasian non-monsoon land surface heating than in North American land surface heating. The ocean forcing from the ENSO is secondary and tends to be confined in the tropics. Our results have strong implications to interpretation of the feedback of global warming on hydrological cycle over Asia and North America. Under the projected global warming due to the anthropogenic forcing, the prominent surface warming over Eurasian non-monsoon regions is a robust feature which, through the mechanism discussed here, would favor a precipitation increase over Asian monsoon regions and a precipitation decrease over extratropical North America.
Activation of the unfolded protein response promotes axonal regeneration after peripheral nerve injury
Authors: Oñate Maritza , Catenaccio Alejandra , Martínez Gabriela , Armentano Donna , Parsons Geoffrey , Kerr Bredford , Hetz Claudio , Court Felipe A. 
Published: February 2016

AbstractAlthough protein-folding stress at the endoplasmic reticulum (ER) is emerging as a driver of neuronal dysfunction in models of spinal cord injury and neurodegeneration, the contribution of this pathway to peripheral nerve damage remains poorly explored. Here we targeted the unfolded protein response (UPR), an adaptive reaction against ER stress, in mouse models of sciatic nerve injury and found that ablation of the transcription factor XBP1, but not ATF4, significantly delay locomotor recovery. XBP1 deficiency led to decreased macrophage recruitment, a reduction in myelin removal and axonal regeneration. Conversely, overexpression of XBP1s in the nervous system in transgenic mice enhanced locomotor recovery after sciatic nerve crush, associated to an improvement in key pro-regenerative events. To assess the therapeutic potential of UPR manipulation to axonal regeneration, we locally delivered XBP1s or an shRNA targeting this transcription factor to sensory neurons of the dorsal root ganglia using a gene therapy approach and found an enhancement or reduction of axonal regeneration in vivo, respectively. Our results demonstrate a functional role of specific components of the ER proteostasis network in the cellular changes associated to regeneration and functional recovery after peripheral nerve injury.
Enhanced virulence of Histoplasma capsulatum through transfer and surface incorporation of glycans from Cryptococcus neoformans during co-infection
Authors: Cordero Radames J. B. , Liedke Susie Coutinho , de S. Araújo Glauber R. , Martinez Luis R. , Nimrichter Leonardo , Frases Susana , Peralta Jose Mauro , Casadevall Arturo , Rodrigues Marcio L. , Nosanchuk Joshua D. , Guimaraes Allan J. 
Published: February 2016

AbstractCryptococcus neoformans (Cn) and Histoplasma capsulatum (Hc) co-exist in the environment and occasionally co-infect individuals, which can lead to severe disease/lethal outcomes. We investigated specific interactions between Cn-Hc to determine the impact of synchronous infection in virulence and disease. Co-infected mice had significantly higher mortality than infection with either species or acapsular Cn-Hc. Coating of Hc with cryptococcal glycans (Cn-gly) resulted in higher pulmonary fungal burden in co-infected animals relative to control. Co-cultivation or addition of Cn-gly resulted in enhanced pellicle formation with a hybrid polysaccharide matrix with higher reactivity to GXM mAbs. Transfer and incorporation of Cn polysaccharide onto Hc surface was time and temperature dependent. Cn-gly transfer altered the zeta potential of Hc and was associated with increased resistance to phagocytosis and killing by macrophages. Mice infected with Hc and subsequently injected with purified Cn-gly died significantly more rapidly than Hc alone infected, establishing the precedent that virulence factors from one fungus can enhance the virulence of unrelated species. These findings suggest a new mechanism of microbial interaction involving the transfer of virulence traits that translates into enhanced lethality during mixed fungal infections and highlights the importance of studying heterogeneous microbial populations in the setting of infection.
Real-Time Control of a Neuroprosthetic Hand by Magnetoencephalographic Signals from Paralysed Patients
Authors: Fukuma Ryohei , Yanagisawa Takufumi , Saitoh Youichi , Hosomi Koichi , Kishima Haruhiko , Shimizu Takeshi , Sugata Hisato , Yokoi Hiroshi , Hirata Masayuki , Kamitani Yukiyasu , Yoshimine Toshiki 
Published: February 2016

AbstractNeuroprosthetic arms might potentially restore motor functions for severely paralysed patients. Invasive measurements of cortical currents using electrocorticography have been widely used for neuroprosthetic control. Moreover, magnetoencephalography (MEG) exhibits characteristic brain signals similar to those of invasively measured signals. However, it remains unclear whether non-invasively measured signals convey enough motor information to control a neuroprosthetic hand, especially for severely paralysed patients whose sensorimotor cortex might be reorganized. We tested an MEG-based neuroprosthetic system to evaluate the accuracy of using cortical currents in the sensorimotor cortex of severely paralysed patients to control a prosthetic hand. The patients attempted to grasp with or open their paralysed hand while the slow components of MEG signals (slow movement fields; SMFs) were recorded. Even without actual movements, the SMFs of all patients indicated characteristic spatiotemporal patterns similar to actual movements, and the SMFs were successfully used to control a neuroprosthetic hand in a closed-loop condition. These results demonstrate that the slow components of MEG signals carry sufficient information to classify movement types. Successful control by paralysed patients suggests the feasibility of using an MEG-based neuroprosthetic hand to predict a patient’s ability to control an invasive neuroprosthesis via the same signal sources as the non-invasive method.
First evidence of European eels exiting the Mediterranean Sea during their spawning migration
Authors: Amilhat Elsa , Aarestrup Kim , Faliex Elisabeth , Simon Gaël , Westerberg Håkan , Righton David 
Published: February 2016

AbstractThe migration route and the spawning site of the European eel Anguilla anguilla are still uncertain. It has been suggested that the Mediterranean eel stock does not contribute to spawning because there is no evidence of eels leaving the Mediterranean Sea. To test this hypothesis, we equipped eight female silver eels from the south of France with pop-up satellite tags during escapement from coastal waters. Once in deeper water, the eels quickly established diel vertical migration (DVM) between the upper and lower mesopelagic zone. Five tagged eels were taken by predators within the Mediterranean, but two eels reached the Atlantic Ocean after six months and at distances greater than 2000 km from release. These eels ceased their DVM while they negotiated the Gibraltar Strait, and remained in deep water until they reached the Atlantic Ocean, when they recommenced DVM. Our results are the first to show that eels from Mediterranean can cross the Strait of Gibraltar and continue their migration into the Atlantic Ocean. This finding suggests that Mediterranean countries, as for other EU states, have an important role to play in contributing to conservation efforts for the recovery of the European eel stock.
The role of photo-electric properties of silk cocoon membrane in pupal metamorphosis: A natural solar cell
Authors: Tulachan Brindan , Srivastava Shivansh , Kusurkar Tejas Sanjeev , Sethy Niroj Kumar , Bhargava Kalpana , Singh Sushil Kumar , Philip Deepu , Bajpai Alok , Das Mainak 
Published: February 2016

AbstractSilkworm metamorphosis is governed by the intrinsic and extrinsic factors. One key intrinsic factor is the temporal electrical firing of the neuro-secretory cells of the dormant pupae residing inside the silk cocoon membrane (SCM). Extrinsic factors are environmental like temperature, humidity and light. The firing pattern of the cells is a function of the environmental factors that eventually controls the pupal development. How does the nervous organization of the dormant pupae sense the environment even while enclosed inside the cocoon shell? We propose that the SCM does this by capturing the incident light and converting it to electricity in addition to translating the variation in temperature and humidity as an electrical signal. The light to electricity conversion is more pronounced with ultraviolet (UV) frequency. We discovered that a UV sensitive fluorescent quercetin derivative that is present on the SCM and pupal body surface is responsible for generating the observed photo current. Based on these results, we propose an equivalent circuit model of the SCM where an overall electrical output transfers the weather information to pupae, directing its growth. We further discuss the implication of this electrical energy conversion and its utility for consumable electricity.
Characterization of a novel Achromobacter xylosoxidans specific siphoviruse: phiAxp-1
Authors: Li Erna , Zhao Jiangtao , Ma Yanyan , Wei Xiao , Li Huan , Lin Weishi , Wang Xuesong , Li Chao , Shen Zhiqiang , Zhao Ruixiang , Jiang Aimin , Yang Huiying , Yuan Jing , Zhao Xiangna 
Published: February 2016

AbstractBacteriophages have recently been considered as an alternative biocontrol tool because of the widespread occurrence of antimicrobial-resistant Achromobacter xylosoxidans. Herein, we isolated a virulent bacteriophage (phiAxp-1) from a water sample of the Bohai sea of China that specifically infects A. xylosoxidans. Transmission electron microscopy revealed that phage phiAxp-1 belongs to the Siphoviridae. We sequenced the genome of phiAxp-1, which comprises 45,045 bp with 64 open reading frames. Most of the proteins encoded by phiAxp-1 have no similarity to sequences in the public databases. Twenty-one proteins with assigned functions share weak homology with those of other dsDNA bacteriophages infecting diverse hosts, such as Burkholderia phage KL1, Pseudomonas phage 73, Pseudomonas phage vB_Pae-Kakheti25, Pseudomonas phage vB_PaeS_SCH_Ab26, Acinetobacter phage IME_AB3 and Achromobacter phage JWX. The genome can be divided into different clusters for the head and tail structure, DNA replication and mazG. The sequence and genomic organization of bacteriophage phiAxp-1 are clearly distinct from other known Siphoviridae phages; therefore, we propose that it is a member of a novel genus of the Siphoviridae family. Furthermore, one-step growth curve and stability studies of the phage were performed, and the specific receptor of phiAxp-1 was identified as the lipopolysaccharide of A. xylosoxidans.
The green peach aphid Myzus persicae perform better on pre-infested Chinese cabbage Brassica pekinensis by enhancing host plant nutritional quality
Authors: Cao He-He , Liu Hui-Ru , Zhang Zhan-Feng , Liu Tong-Xian 
Published: February 2016

AbstractThe green peach aphid, Myzus persicae Sulzer, is a notorious pest on vegetables, which often aggregates in high densities on crop leaves. In this study, we investigated whether M. persicae could suppress the resistance level of Chinese cabbage Brassica pekinensis. M. persicae performed better in terms of weight gain (~33% increase) and population growth (~110% increase) when feeding on previously infested (pre-infested) Chinese cabbage compared with those on non-infested plants. However, when given a choice, 64% of the aphids preferred to settle on non-infested leaves, while 29% of aphids chose pre-infested leaves that had a 2.9 times higher concentration of glucosinolates. Aphid feeding significantly enhanced the amino acid:sugar ratio of phloem sap and the absolute amino acid concentration in plant leaves. Aphid infestation significantly increased the expression levels of salicylic acid (SA) marker genes, while it had marginal effects on the expression of jasmonate marker genes. Exogenously applied SA or methyl jasmonate had no significant effects on M. persicae performance, although these chemicals increased glucosinolates concentration in plant leaves. M. persicae infestation increase amino acid:sugar ratio and activate plant defenses, but aphid performed better on pre-infested plants, suggesting that both nutrition and toxics should be considered in insect-plant interaction.