bluuebunny/crossref_metadata_2025_split huggingface dataset:
Cryptic species and colonization processes in Ophryotrocha (Annelida, Dorvilleidae) inhabiting vertebrate remains in the shallow‐water Mediterranean
Authors: Taboada Sergi , Leiva Carlos , Bas Maria , Schult Nancy , McHugh Damhnait 
Published: March 2017

Over the past several years, there has been growing interest in how bones of decaying mammals are colonized in the marine seabed. One of the most common opportunistic taxa occurring worldwide on bones is dorvilleid polychaetes of the genus Ophryotrocha. In a recent study in the Mediterranean, Ophryotrocha puerilis and Ophryotrocha alborana were two of the most abundant species occurring in experimentally deployed bones. These species have direct development and this makes them a suitable model to study the mechanisms and processes allowing organisms lacking a dispersive larval phase to colonize new substrates. Here, we address the colonization processes at the molecular level for populations of O. puerilis and O. alborana on experimentally deployed mammal bones in the shallow‐water Mediterranean collected over a year at 3‐month intervals. High genetic distances between some of the O. puerilis organisms collected indicated the occurrence of at least two cryptic sibling species (O. puerilis ‘Shallow’ and O. puerilis ‘Deep’) apart from O. puerilis sensu stricto. This was corroborated with phylogenetic analyses using an alignment of three concatenated genes (COI, 16S, H3) and with species delimitation analyses using COI. The haplotype network inferred from COI sequences for O. puerilis ‘Shallow’ showed a few common haplotypes shared between the two trimesters analysed and several other less represented haplotypes only present in one trimester. Thus, colonization of these experimental bones may have been achieved by a few organisms that arrived to the bones and were able to reseed, and by several individuals arriving to the experimental bones and not persisting across time. In contrast, the haplotype network for O. alborana revealed that none of the haplotypes present in three different trimesters were shared, suggesting that the populations arriving at the bones during each trimester were totally replaced by new individuals during the subsequent trimesters. Our study suggests that different species of shallow‐water Ophryotrocha occurring in the Mediterranean may have different patterns of substrate colonization despite sharing similar life histories.
Maternal chronic hypoxia increases expression of genes regulating lung liquid movement and surfactant maturation in male fetuses in late gestation
Authors: McGillick Erin V. , Orgeig Sandra , Allison Beth J. , Brain Kirsty L. , Niu Youguo , Itani Nozomi , Skeffington Katie L. , Kane Andrew D. , Herrera Emilio A. , Giussani Dino A. , Morrison Janna L. 
Published: March 2017

Key points
Chronic fetal hypoxaemia is a common pregnancy complication associated with intrauterine growth restriction that may influence respiratory outcome at birth.
We investigated the effect of maternal chronic hypoxia for a month in late gestation on signalling pathways regulating fetal lung maturation and the transition to air‐breathing at birth using isobaric hypoxic chambers without alterations to maternal food intake.
Maternal chronic hypoxia in late gestation increases fetal lung expression of genes regulating hypoxia signalling, lung liquid reabsorption and surfactant maturation, which may be an adaptive response in preparation for the successful transition to air‐breathing at birth.
In contrast to other models of chronic fetal hypoxaemia, late gestation onset fetal hypoxaemia promotes molecular regulation of fetal lung maturation. This suggests a differential effect of timing and duration of fetal chronic hypoxaemia on fetal lung maturation, which supports the heterogeneity observed in respiratory outcomes in newborns following exposure to chronic hypoxaemia in utero.
AbstractChronic fetal hypoxaemia is a common pregnancy complication that may arise from maternal, placental and/or fetal factors. Respiratory outcome of the infant at birth likely depends on the duration, timing and severity of the hypoxaemic insult. We have isolated the effect of maternal chronic hypoxia (MCH) for a month in late gestation on fetal lung development. Pregnant ewes were exposed to normoxia (21% O2) or hypoxia (10% O2) from 105 to 138 days of gestation (term ∼145 days). At 138 days, gene expression in fetal lung tissue was determined by quantitative RT‐PCR. Cortisol concentrations were determined in fetal plasma and lung tissue. Numerical density of surfactant protein positive cells was determined by immunohistochemistry. MCH reduced maternal (106 ± 2.9 vs. 47 ± 2.8 mmHg) and fetal body weight (4.0 ± 0.4 vs. 3.2 ± 0.9 kg). MCH increased fetal lung expression of the anti‐oxidant marker CAT and decreased expression of the pro‐oxidant marker NOX‐4. MCH increased expression of genes regulating hypoxia signalling and feedback (HIF‐3α, KDM3A, SLC2A1, EGLN‐3). There was no effect of MCH on fetal plasma/lung tissue cortisol concentrations, nor genes regulating glucocorticoid signalling (HSD11B‐1, HSD11B‐2, NR3C1, NR3C2). MCH increased expression of genes regulating sodium (SCNN1‐B, ATP1‐A1, ATP1‐B1) and water (AQP‐4) movement in the fetal lung. MCH promoted surfactant maturation (SFTP‐B, SFTP‐D, ABCA3) at the molecular level, but did not alter the numerical density of surfactant positive cells in lung tissue. MCH in late gestation promotes molecular maturation of the fetal lung, which may be an adaptive response in preparation for the successful transition to air‐breathing at birth.
On the equivalence of separability and extendability of quantum states
Authors: Rajarama Bhat B. V. , Parthasarathy K. R. , Sengupta Ritabrata 
Published: March 2017

Motivated by the notions of [Formula: see text]-extendability and complete extendability of the state of a finite level quantum system as described by Doherty et al. [Complete family of separability criteria, Phys. Rev. A 69 (2004) 022308], we introduce parallel definitions in the context of Gaussian states and using only properties of their covariance matrices, derive necessary and sufficient conditions for their complete extendability. It turns out that the complete extendability property is equivalent to the separability property of a bipartite Gaussian state. Following the proof of quantum de Finetti theorem as outlined in Hudson and Moody [Locally normal symmetric states and an analogue of de Finetti’s theorem, Z. Wahrscheinlichkeitstheorie und Verw. Gebiete, 33(4) (1975/76) 343–351], we show that separability is equivalent to complete extendability for a state in a bipartite Hilbert space where at least one of which is of dimension greater than 2. This, in particular, extends the result of Fannes, Lewis, and Verbeure [Symmetric states of composite systems, Lett. Math. Phys. 15(3) (1988) 255–260] to the case of an infinite dimensional Hilbert space whose C* algebra of all bounded operators is not separable.
Maxwell–Boltzmann type Hawking radiation
Authors: Yoon Youngsub 
Published: March 2017

Twenty years ago, Rovelli proposed that the degeneracy of black hole (i.e. the exponential of the Bekenstein–Hawking entropy) is given by the number of ways the black hole horizon area can be expressed as a sum of unit areas. However, when counting the sum, one should treat the area quanta on the black hole horizon as distinguishable. This distinguishability of area quanta is noted in Rovelli’s paper. Building on this idea, we derive that the Hawking radiation spectrum is not given by Planck radiation spectrum (i.e. Bose–Einstein distribution) but given by Maxwell–Boltzmann distribution.
A Wideband Digital Back-End for the Upgraded GMRT
Authors: Reddy Suda Harshavardhan , Kudale Sanjay , Gokhale Upendra , Halagalli Irappa , Raskar Nilesh , De Kishalay , Gnanaraj Shelton , Ajith Kumar B , Gupta Yashwant 
Published: March 2017

Traditionally, back-ends for radio telescopes have been built using a hardware-based approach with ASICs, FPGAs, etc. With advancements in processing power of CPUs, software-based systems have emerged as an alternative option, which has received additional impetus with the advent of GPU-based computing. We present here the design of a hybrid system combining the best of FPGAs, CPUs and GPUs, to implement a next generation back-end for the upgraded GMRT. This back-end can process 400 MHz bandwidth signals from 32 dual-polarized antennas, for both interferometry and beamformer applications, including narrowband spectral line modes for the interferometer, incoherent array and phased array mode of operations for the beamfomer, and also a voltage mode attached to a real-time coherent dedispersion system for the beamformer. We describe in detail the design and architecture of this system, including the novel features and capabilities. We also present sample results from the system that validate its performance in conjunction with the entire receiver chain of the upgraded GMRT.
Ranking Businesses and Municipal Locations by Spatiotemporal Cardiac Arrest Risk to Guide Public Defibrillator Placement
Authors: Sun Christopher L.F. , Brooks Steven C. , Morrison Laurie J. , Chan Timothy C.Y. 
Published: March 2017

Background:
Efforts to guide automated external defibrillator placement for out-of-hospital cardiac arrest (OHCA) treatment have focused on identifying broadly defined location categories without considering hours of operation. Broad location categories may be composed of many businesses with varying accessibility. Identifying specific locations for automated external defibrillator deployment incorporating operating hours and time of OHCA occurrence may improve automated external defibrillator accessibility. We aim to identify specific businesses and municipal locations that maximize OHCA coverage on the basis of spatiotemporal assessment of OHCA risk in the immediate vicinity of franchise locations.

Methods:
This study was a retrospective population-based cohort study using data from the Toronto Regional RescuNET Epistry cardiac arrest database. We identified all nontraumatic public OHCAs occurring in Toronto, ON, Canada, from January 2007 through December 2015. We identified 41 unique businesses and municipal location types with ≥20 locations in Toronto from the YellowPages, Canadian Franchise Association, and the City of Toronto Open Data Portal. We obtained their geographic coordinates and hours of operation from Web sites, by phone, or in person. We determined the number of OHCAs that occurred within 100 m of each location when it was open (spatiotemporal coverage) for Toronto overall and downtown. The businesses and municipal locations were then ranked by spatiotemporal OHCA coverage. To evaluate temporal stability of the rankings, we calculated intraclass correlation of the annual coverage values.

Results:
There were 2654 nontraumatic public OHCAs. Tim Hortons ranked first in Toronto, covering 286 OHCAs. Starbucks ranked first in downtown, covering 110 OHCAs. Coffee shops and bank machines from the 5 largest Canadian banks occupied 8 of the top 10 spots in both Toronto and downtown. The rankings exhibited high temporal stability with intraclass correlation values of 0.88 (95% confidence interval, 0.83–0.93) in Toronto and 0.79 (95% confidence interval, 0.71–0.86) in downtown.

Conclusions:
We identified and ranked businesses and municipal locations by spatiotemporal OHCA risk in their immediate vicinity. This approach may help policy makers and funders to identify and prioritize potential partnerships for automated external defibrillator deployment in public-access defibrillator programs.
A New Generation of Tropical Cyclone Size Measurements from Space
Authors: Reul N. , Chapron B. , Zabolotskikh E. , Donlon C. , Mouche A. , Tenerelli J. , Collard F. , Piolle J. F. , Fore A. , Yueh S. , Cotton J. , Francis P. , Quilfen Y. , Kudryavtsev V. 
Published: March 2017

AbstractWind radii estimates in tropical cyclones (TCs) are crucial to helping determine the TC wind structure for the production of effective warnings and to constrain initial conditions for a number of applications. In that context, we report on the capabilities of a new generation of satellite microwave radiometers operating at L-band frequency (∼1.4 GHz) and dual C band (∼6.9 and 7.3 GHz). These radiometers provide wide-swath (>1,000 km) coverage at a spatial resolution of ∼40 km and revisit of ∼3 days. The L-band measurements are almost unaffected by rain and atmospheric effects, while dual C-band data offer an efficient way to significantly minimize these impacts. During storm conditions, increasing foam coverage and thickness at the ocean surface sufficiently modify the surface emissivity at these frequencies and, in turn, the brightness temperature (Tb) measurements. Based on aircraft measurements, new geophysical model functions have been derived to infer reliable ocean surface wind speeds from measured Tb variations. Data from these sensors collected over 2010–15 are shown to provide reliable estimates of the gale-force (34 kt), damaging (50 kt), and destructive winds (64 kt) within the best track wind radii uncertainty. Combined, and further associated with other available observations, these measurements can now provide regular quantitative and complementary surface wind information of interest for operational TC forecasting operations.
Approximating Long-Term Statistics Early in the Global Precipitation Measurement Era
Authors: Stanley Thomas , Kirschbaum Dalia B. , Huffman George J. , Adler Robert F. 
Published: March 2017

Abstract
Long-term precipitation records are vital to many applications, especially the study of extreme events. The Tropical Rainfall Measuring Mission (TRMM) has served this need, but TRMM’s successor mission, Global Precipitation Measurement (GPM), does not yet provide a long-term record. Quantile mapping, the conversion of values across paired empirical distributions, offers a simple, established means to approximate such long-term statistics but only within appropriately defined domains. This method was applied to a case study in Central America, demonstrating that quantile mapping between TRMM and GPM data maintains the performance of a real-time landslide model. Use of quantile mapping could bring the benefits of the latest satellite-based precipitation dataset to existing user communities, such as those for hazard assessment, crop forecasting, numerical weather prediction, and disease tracking.
Drag Produced by Waves Trapped at a Density Interface in Nonhydrostatic Flow over an Axisymmetric Hill
Authors: Teixeira Miguel A. C. , Paci Alexandre , Belleudy Anne 
Published: March 2017

Abstract
Linear nonhydrostatic theory is used to evaluate the drag produced by 3D trapped lee waves forced by an axisymmetric hill at a density interface. These waves occur at atmospheric temperature inversions, for example, at the top of the boundary layer, and contribute to low-level drag possibly misrepresented as turbulent form drag in large-scale numerical models. Unlike in 2D waves, the drag has contributions from a continuous range of wavenumbers forced by the topography, because the waves can vary their angle of incidence to match the resonance condition. This leads to nonzero drag for Froude numbers (Fr) both &lt;1 and &gt;1 and a drag maximum typically for Fr slightly below 1, with lower magnitude than in hydrostatic conditions owing to wave dispersion. These features are in good agreement with laboratory experiments using two axisymmetric obstacles, particularly for the lower obstacle, if the effects of a rigid lid above the upper layer and friction are taken into account. Quantitative agreement is less satisfactory for the higher obstacle, as flow nonlinearity increases. However, even in that case the model still largely outperforms both 3D hydrostatic and 2D nonhydrostatic theories, emphasizing the importance of both 3D and nonhydrostatic effects. The associated wave signatures are dominated by transverse waves for Fr lower than at the drag maximum, a dispersive “Kelvin ship-wave” pattern near the maximum, and divergent waves for Fr beyond the maximum. The minimum elevation at the density-interface depression existing immediately downstream of the obstacle is significantly correlated with the drag magnitude.
On the Tropical Atmospheric Signature of El Niño
Authors: Adames Ángel F. , Wallace John M. 
Published: March 2017

Abstract
The linear atmospheric signature of ENSO, obtained by regressing fields of geopotential height Z, wind, vertical velocity, and rainfall upon the Niño-3.4 sea surface temperature (SST) index, is partitioned into zonally symmetric and eddy components. The zonally symmetric component is thermally forced by the narrowing and intensification of the zonally averaged equatorial rain belt during El Niño and mechanically forced by the weakening of the upper-tropospheric equatorial stationary waves and their associated flux of wave activity. The eddy component of the ENSO signature is decomposed into barotropic (BT) and baroclinic (BC) contributions, the latter into first and second modal structures BC1 and BC2, separable functions of space (x, y), and pressure p, using eigenvector analysis. BC1 exhibits a nearly equatorially symmetric planetary wave structure comprising three dumbbell-shaped features suggestive of equatorial Rossby waves, with out-of-phase wind and geopotential height perturbations in the upper and lower troposphere. BC1 and BT exhibit coincident centers of action. In regions of the tropics where the flow in the climatological-mean stationary waves is cyclonic, BT reinforces BC1, and vice versa, in accordance with vorticity balance considerations. BC1 and BT dominate the eddy ENSO signature in the free atmosphere. Most of the residual is captured by BC2, which exhibits a shallow, convergent boundary layer signature forced by the weakening of the equatorial cold tongue in SST. The anomalous boundary layer convergence drives a deep convection signature whose upper-tropospheric outflow is an integral part of the BC1 contribution to the ENSO signature.
Evolution of Intermediate Water Masses Based on Argo Float Displacements
Authors: Sévellec F. , Colin de Verdiére A. , Ollitrault M. 
Published: March 2017

AbstractThe evolution and dispersion of intermediate water masses in the ocean interior is studied. To this purpose, an empirical statistical model of Lagrangian tracers at a constant depth level is developed. The model follows the transfer operator based on 10-day deep displacements of Argo floats at ~1000 m depth. An asymptotic analysis of the model shows the existence of 10 principal stationary points (the 10 locations attract asymptotically 97% of the tracers). It takes ~1000 years to reach this asymptotic regime relevant for estimating the stationary points. For Lagrangian floats, the concept of attractor needs to be generalized in a statistical sense (versus deterministic), except for a few places in the ocean. In this new framework, a tracer has a likelihood to reach the stationary points, rather than a certainty to reach a single stationary point. The empirical statistical model is used to describe the fate of three intermediate water masses: North Pacific Intermediate Water (NPIW), Mediterranean Water (MW), and Antarctic Intermediate Water (AAIW). These experiments show a dramatic difference in the long-time behavior of NPIW, MW, and AAIW. In the permanent regime, the NPIW concentrates locally (in the Kuroshio recirculation) and the MW remains mainly regional (concentrated in the subtropical gyre of the North Atlantic), whereas the AAIW spreads globally (well mixed throughout the entire ocean).
Simulated Polarimetric Fields of Ice Vapor Growth Using the Adaptive Habit Model. Part I: Large-Eddy Simulations
Authors: Sulia Kara J. , Kumjian Matthew R. 
Published: March 2017

Abstract
The bulk adaptive habit model (AHM) explicitly predicts ice particle aspect ratio, improving the representation of microphysical processes and properties, including ice–liquid-phase partitioning. With the unique ability to predict ice particle shape and density, the AHM is combined with an offline forward operator to produce fields of simulated polarimetric variables. An evaluation of AHM-forward-simulated dual-polarization radar signatures in an idealized Arctic mixed-phase cloud is presented. Interpretations of those signatures are provided through microphysical model output using the large-eddy simulation mode of the Weather Research and Forecasting Model.
Vapor-grown ice properties are associated with distinct observable signatures in polarimetric radar variables, with clear sensitivities to the simulated ice particle properties, including ice number, size, and distribution shape. In contrast, the liquid droplet number has little influence on both polarimetric and microphysical variables in the case presented herein. Polarimetric quantities are sensitive to the dominating crystal habit type in a volume, with enhancements for aspect ratios much lower or higher than unity. This synthesis of a microphysical model and a polarimetric forward simulator is a first step in the evaluation of detailed AHM microphysics.
Simulated Polarimetric Fields of Ice Vapor Growth Using the Adaptive Habit Model. Part II: A Case Study from the FROST Experiment
Authors: Sulia Kara J. , Kumjian Matthew R. 
Published: March 2017

Abstract
A new adaptive habit model (AHM) grows ice crystals through vapor deposition while evolving ice particle properties, including shape and effective density. The AHM provides an opportunity to investigate observed microphysical processes through the computation of polarimetric variables and corroboration with microphysical model output. This study is unique because the polarimetric scattering calculations are computed using predicted microphysical parameters rather than a priori assumptions that are imposed within the scattering calculations in the forward simulator, allowing for a more effective comparison to radar observations. Through the simulation of a case in the Front Range of the Rocky Mountains in Colorado using the Advanced Research version of the Weather Research and Forecasting Model, it is found that the AHM approximates ice mass, shape, cloud vertical structure, and temporal evolution as reflected through polarimetric quantities compared to observations. AHM reflectivity magnitudes are similar to those observed with radar and are an improvement over spherical ice crystal assumptions.
Further analyses are completed to examine the effect of microphysical processes on the evolution of the differential reflectivity and specific differential phase, both of which are simulated using the AHM. Simulations reveal a polarimetric response to ice crystal mass, number, size, density, and aspect ratio. While results reveal the need for model improvements (e.g., parameterizations for aggregation rate), testing forward-simulated radar fields against observations is a first step in the validation of model microphysical and precipitation processes.