bluuebunny/crossref_metadata_2025_split huggingface dataset:
Observations of internal flow inside an evaporating nanofluid sessile droplet in the presence of an entrapped air bubble
Authors: Shin Dong Hwan , Allen Jeffrey S. , Lee Seong Hyuk , Choi Chang Kyoung 
Published: September 2016

AbstractUsing a unique, near-field microscopy technique, fringe patterns and nanoparticle motions are visualized immediately following a nanofluid droplet deposition on a glass substrate in which an air bubble is entrapped. The nanofluid consists of DI-water, 0.10% Aluminum Oxide nanoparticles with an average diameter of 50 nm, and 0.0005% yellow-green polystyrene fluorescent particles of 1 μm diameter. High-speed, fluorescent-mode confocal imaging enables investigation of depth-wise sectioned particle movements in the nanofluid droplet inside which a bubble is entrapped. The static contact angle is increased when a bubble is applied. In the presence of the bubble in the droplet, the observed flow toward the center of the droplet is opposite to the flow observed in a droplet without the bubble. When the bubble is present, the evaporation process is retarded. Also, random motion is observed in the contact line region instead of the typical evaporation-driven flow toward the droplet edge. Once the bubble bursts, however, the total evaporation time decreases due to the change in the contact line characteristics. Moreover, the area of fringe patterns beneath the bubble increases with time. Discussed herein is a unique internal flow that has not been observed in nanofluid droplet evaporation.
Ammonia deposition in the neighbourhood of an intensive cattle feedlot in Victoria, Australia
Authors: Shen Jianlin , Chen Deli , Bai Mei , Sun Jianlei , Coates Trevor , Lam Shu Kee , Li Yong 
Published: September 2016

AbstractIntensive cattle feedlots are large emission sources of ammonia (NH3), but NH3 deposition to the landscape downwind of feedlots is not well understood. We conducted the first study in Australia to measure NH3 dry deposition within 1 km of a commercial beef cattle feedlot in Victoria. NH3 concentrations and deposition fluxes decreased exponentially with distance away from the feedlot. The mean NH3 concentrations decreased from 419 μg N m−3 at 50 m to 36 μg N m−3 at 1 km, while the mean NH3 dry deposition fluxes decreased from 2.38 μg N m−2 s−1 at 50 m to 0.20 μg N m−2 s−1 at 1 km downwind from the feedlot. These results extrapolate to NH3 deposition of 53.9 tonne N yr−1 in the area within 1 km from the feedlot, or 67.5 kg N ha−1 yr−1 as an area-weighted mean, accounting for 8.1% of the annual NH3-N emissions from the feedlot. Thus NH3 deposition around feedlots is a significant nitrogen input for surrounding ecosystems. Researches need be conducted to evaluate the impacts of NH3 deposition on the surrounding natural or semi-naturals ecosystems and to reduce N fertilizer application rate for the surrounding crops by considering nitrogen input from NH3 deposition.
Quantum optical signatures in strong-field laser physics: Infrared photon counting in high-order-harmonic generation
Authors: Gonoskov I. A. , Tsatrafyllis N. , Kominis I. K. , Tzallas P. 
Published: September 2016

AbstractWe analytically describe the strong-field light-electron interaction using a quantized coherent laser state with arbitrary photon number. We obtain a light-electron wave function which is a closed-form solution of the time-dependent Schrödinger equation (TDSE). This wave function provides information about the quantum optical features of the interaction not accessible by semi-classical theories. With this approach we can reveal the quantum optical properties of high harmonic generation (HHG) process in gases by measuring the photon statistics of the transmitted infrared (IR) laser radiation. This work can lead to novel experiments in high-resolution spectroscopy in extreme-ultraviolet (XUV) and attosecond science without the need to measure the XUV light, while it can pave the way for the development of intense non-classical light sources.
Mechanistic insights from resolving ligand-dependent kinetics of conformational changes at ATP-gated P2X1R ion channels
Authors: Fryatt Alistair G. , Dayl Sudad , Cullis Paul M. , Schmid Ralf , Evans Richard J. 
Published: September 2016

AbstractStructural studies of P2X receptors show a novel U shaped ATP orientation following binding. We used voltage clamp fluorometry (VCF) and molecular dynamics (MD) simulations to investigate agonist action. For VCF the P2X1 receptor (P2X1R) K190C mutant (adjacent to the agonist binding pocket) was labelled with the fluorophore MTS-TAMRA and changes in fluorescence on agonist treatment provided a real time measure of conformational changes. Studies with heteromeric channels incorporating a key lysine mutation (K68A) in the ATP binding site demonstrate that normally three molecules of ATP activate the receptor. The time-course of VCF responses to ATP, 2′-deoxy ATP, 3′-deoxy ATP, Ap5A and αβmeATP were agonist dependent. Comparing the properties of the deoxy forms of ATP demonstrated the importance of the 2′ hydroxyl group on the ribose ring in determining agonist efficacy consistent with MD simulations showing that it forms a hydrogen bond with the γ-phosphate oxygen stabilizing the U-shaped conformation. Comparison of the recovery of fluorescence on agonist washout, with channel activation to a second agonist application for the partial agonists Ap5A and αβmeATP, showed a complex relationship between conformational change and desensitization. These results highlight that different agonists induce distinct conformational changes, kinetics and recovery from desensitization at P2X1Rs.
Bamboo shoot fiber prevents obesity in mice by modulating the gut microbiota
Authors: Li Xiufen , Guo Juan , Ji Kailong , Zhang Ping 
Published: September 2016

AbstractDietary fiber has been shown to prevent high-fat diet induced obesity through modulating the gut microbiota; however, quality difference in fiber type is largely unknown. We performed a 6 week study on C57BL/6J mice fed a macronutrient matched high-fat diet with different fiber types including cellulose (HFC), bamboo shoot fiber (HFBS) and several other commonly consumed fibers. Our results showed that the HFBS group exhibited the lowest weight gain among all diet groups and had improved lipid profiles and glycemic control compared with the HFC group. As revealed by 16S rRNA gene sequencing, loss of diversity in the gut microbiota induced by the HFC diet was largely prevented by the HFBS diet. Moreover, compared with the HFC diet, the HFBS diet resulted in markedly increased relative abundance of Bacteroidetes and strong inhibition of Verrucomicrobia, two divisions strongly correlated with body weight. In conclusion, the present study provides evidence of a quality difference among different types of dietary fibers and shows that bamboo shoot fiber is the most effective in suppressing high-fat diet induced obesity. Our findings indicate that bamboo shoot fiber is a potential prebiotic fiber which modulates the gut microbiota and improves host metabolism.
High-temperature operation of broadband bidirectional terahertz quantum-cascade lasers
Authors: Khanal Sudeep , Gao Liang , Zhao Le , Reno John L. , Kumar Sushil 
Published: September 2016

AbstractTerahertz quantum cascade lasers (QCLs) with a broadband gain medium could play an important role for sensing and spectroscopy since then distributed-feedback schemes could be utilized to produce laser arrays on a single semiconductor chip with wide spectral coverage. QCLs can be designed to emit at two different frequencies when biased with opposing electrical polarities. Here, terahertz QCLs with bidirectional operation are developed to achieve broadband lasing from the same semiconductor chip. A three-well design scheme with shallow-well GaAs/Al0.10Ga0.90As superlattices is developed to achieve high-temperature operation for bidirectional QCLs. It is shown that shallow-well heterostructures lead to optimal quantum-transport in the superlattice for bidirectional operation compared to the prevalent GaAs/Al0.15Ga0.85As material system. Broadband lasing in the frequency range of 3.1–3.7 THz is demonstrated for one QCL design, which achieves maximum operating temperatures of 147 K and 128 K respectively in opposing polarities. Dual-color lasing with large frequency separation is demonstrated for a second QCL, that emits at ~3.7 THz and operates up to 121 K in one polarity, and at ~2.7 THz up to 105 K in the opposing polarity. These are the highest operating temperatures achieved for broadband terahertz QCLs at the respective emission frequencies, and could lead to commercial development of broadband terahertz laser arrays.
Infiltrating cells from host brain restore the microglial population in grafted cortical tissue
Authors: Wang Cong , Tao Sijue , Fang Yukun , Guo Jing , Zhu Lirui , Zhang Shengxiang 
Published: September 2016

AbstractTransplantation of embryonic cortical tissue is considered as a promising therapy for brain injury. Grafted neurons can reestablish neuronal network and improve cortical function of the host brain. Microglia is a key player in regulating neuronal survival and plasticity, but its activation and dynamics in grafted cortical tissue remain unknown. Using two-photon intravital imaging and parabiotic model, here we investigated the proliferation and source of microglia in the donor region by transplanting embryonic cortical tissue into adult cortex. Live imaging showed that the endogenous microglia of the grafted tissue were rapidly lost after transplantation. Instead, host-derived microglia infiltrated and colonized the graft. Parabiotic model suggested that the main source of infiltrating cells is the parenchyma of the host brain. Colonized microglia proliferated and experienced an extensive morphological transition and eventually differentiated into resting ramified morphology. Collectively, these results demonstrated that donor tissue has little contribution to the activated microglia and host brain controls the microglial population in the graft.
Factors associated with significant liver necroinflammation in chronic hepatitis B patients with cirrhosis
Authors: Chen Sheng-Sen , Yu Kang-Kang , Ling Qing-Xia , Huang Chong , Li Ning , Zheng Jian-Ming , Bao Su-Xia , Cheng Qi , Zhu Meng-Qi , Chen Ming-Quan 
Published: September 2016

AbstractWe determined the association between various clinical parameters and significant liver necroinflammation in patients with chronic hepatitis B (CHB) related cirrhosis. Two hundred patients with CHB related cirrhosis were recruited in the final analysis. Clinical laboratory values and characteristics were obtained from the medical record. We performed analyses of the relationships between independent variables and significant liver necroinflammation by using binary logistic regression analysis and discriminant analysis. Significant liver necroinflammation (grade≥2) was found in 58.0% (80/138) of antiviral therapy patients and 48.4% (30/62) of non antiviral therapy patients respectively. Also, there were some significant differences in serum hepatitis B surface antigen (HBsAg), serum hepatitis B e antigen (HBeAg) and serum hepatitis B virus (HBV) DNA between antiviral therapy and non antiviral therapy patients. After that, aspartate aminotransferase (AST), total bilirubin (TBIL), total bile acid (TBA), prothrombin time (PT), aspartate aminotransferase to platelet ratio index (APRI) and serum HBV DNA were confirmed as independent predictors of significant liver necroinflammation in CHB patients with cirrhosis by univariate analysis and multivariate analysis (p = 0.002, 0.044, 0.001, 0.014, 0.01 and 0.02 respectively). Finally, receiver operating characteristic (ROC) curve analysis and discriminant analysis validated that these six variables together have strong predictive power to evaluate significant liver necroinflammation.
Homogeneous diet of contemporary Japanese inferred from stable isotope ratios of hair
Authors: Kusaka Soichiro , Ishimaru Eriko , Hyodo Fujio , Gakuhari Takashi , Yoneda Minoru , Yumoto Takakazu , Tayasu Ichiro 
Published: September 2016

AbstractThe globalization of food production and distribution has homogenized human dietary patterns irrespective of geography, but it is uncertain how far this homogenization has progressed. This study investigated the carbon and nitrogen isotope ratios in the scalp hair of 1305 contemporary Japanese and found values of −19.4 ± 0.6‰ and 9.4 ± 0.6‰ (mean ± SD), respectively. Within Japan, the inter-regional differences for both isotope ratios was less than 1‰, which indicates low dietary heterogeneity among prefectural divisions. The carbon and nitrogen isotope ratios of the hair showed a significant correlation with the results of questionnaires on self-reported dietary habits. The carbon isotope ratios from Japan were lower than those in samples from the USA but higher than those in samples from Europe. These differences stem from the varying dietary proportions of food products originally derived from C3and C4plants. The dietary variation of Japan is as small as those of Europe and USA and smaller than those of some Asian countries. These results indicate that dietary homogeneity has progressed in Japan, which may indicate the influence from the spread of the Western-style diet and food globalization, although dietary heterogeneity among countries is still preserved.
Dynamics of surface evolution in semiconductor thin films grown from a chemical bath
Authors: Gupta Indu , Mohanty Bhaskar Chandra 
Published: September 2016

AbstractDynamics of surface evolution in CdS thin films grown by chemical bath deposition technique has been studied from time sequence of atomic force micrographs. Detailed scaling analysis of surface fluctuation in real and Fourier space yielded characteristic exponents αloc = 0.78 ± 0.07, α = 2.20 ± 0.08, αs = 1.49 ± 0.22, β = 0.86 ± 0.05 and βloc = 0.43 ± 0.10, which are very different from those predicted by the local growth models and are not related to any known universality classes. The observed anomalous scaling pattern, characterized by power law scaling dependence of interface width on deposition time differently at local and global scale, with rapid roughening of the growth front has been discussed to arise as a consequence of a nonlocal effect in the form of diffusional instability.
Grazing improves C and N cycling in the Northern Great Plains: a meta-analysis
Authors: Wang Xiaoyu , McConkey Brian G. , VandenBygaart A. J. , Fan Jianling , Iwaasa Alan , Schellenberg Mike 
Published: September 2016

AbstractGrazing potentially alters grassland ecosystem carbon (C) and nitrogen (N) storage and cycles, however, the overall direction and magnitude of such alterations are poorly understood on the Northern Great Plains (NGP). By synthesizing data from multiple studies on grazed NGP ecosystems, we quantified the response of 30 variables to C and N pools and fluxes to grazing using a comprehensive meta-analysis method. Results showed that grazing enhanced soil C (5.2 ± 4.6% relative) and N (11.3 ± 9.1%) pools in the top layer, stimulated litter decomposition (26.8 ± 18.4%) and soil N mineralization (22.3 ± 18.4%) and enhanced soil NH4+(51.5 ± 42.9%) and NO3−(47.5 ± 20.7%) concentrations. Our results indicate that the NGP grasslands have sequestered C and N in the past 70 to 80 years, recovering C and N lost during a period of widespread grassland deterioration that occurred in the first half of the 20thcentury. Sustainable grazing management employed after this deterioration has acted as a critical factor for C and N amelioration of degraded NGP grasslands and about 5.84 Mg C ha−1CO2-equivalent of anthropogenic CO2emissions has been offset by these grassland soils.
STAR: a simple TAL effector assembly reaction using isothermal assembly
Authors: Gogolok Sabine , Garcia-Diaz Claudia , Pollard Steven M. 
Published: September 2016

AbstractTranscription activator-like effectors (TALEs) contain modular programmable DNA binding domains. Fusing TALEs with effector domains creates synthetic transcription factors (TALE-TFs) or nucleases (TALENs), enabling precise gene manipulations. The construction of TALEs remains challenging due to their repetitive sequences. Here we report a simple TALE assembly reaction (STAR) that enables individual laboratories to generate multiple TALEs in a facile manner. STAR uses an isothermal assembly (‘Gibson assembly’) that is labour- and cost-effective, accessible, rapid and scalable. A small 68-part fragment library is employed, and the specific TALE repeat sequence is generated within ~8 hours. Sequence-verified TALENs or TALE-TF plasmids targeting 17 bp target sequences can be produced within three days, without the need for stepwise intermediate plasmid production. We demonstrate the utility of STAR through production of functional TALE-TFs capable of activating human SOX2 expression. STAR addresses some of the shortcomings of existing Golden Gate or solid-phase assembly protocols and enables routine production of TALE-TFs that will complement emerging CRISPR/Cas9-based reagents across diverse applications in mammalian stem cell and synthetic biology.
Visualization and ligand-induced modulation of dopamine receptor dimerization at the single molecule level
Authors: Tabor Alina , Weisenburger Siegfried , Banerjee Ashutosh , Purkayastha Nirupam , Kaindl Jonas M. , Hübner Harald , Wei Luxi , Grömer Teja W. , Kornhuber Johannes , Tschammer Nuska , Birdsall Nigel J. M. , Mashanov Gregory I. , Sandoghdar Vahid , Gmeiner Peter 
Published: September 2016

AbstractG protein–coupled receptors (GPCRs), including dopamine receptors, represent a group of important pharmacological targets. An increased formation of dopamine receptor D2 homodimers has been suggested to be associated with the pathophysiology of schizophrenia. Selective labeling and ligand-induced modulation of dimerization may therefore allow the investigation of the pathophysiological role of these dimers. Using TIRF microscopy at the single molecule level, transient formation of homodimers of dopamine receptors in the membrane of stably transfected CHO cells has been observed. The equilibrium between dimers and monomers was modulated by the binding of ligands; whereas antagonists showed a ratio that was identical to that of unliganded receptors, agonist-bound D2 receptor-ligand complexes resulted in an increase in dimerization. Addition of bivalent D2 receptor ligands also resulted in a large increase in D2 receptor dimers. A physical interaction between the protomers was confirmed using high resolution cryogenic localization microscopy, with ca. 9 nm between the centers of mass.
Discovery of novel xylosides in co-culture of basidiomycetes Trametes versicolor and Ganoderma applanatum by integrated metabolomics and bioinformatics
Authors: Yao Lu , Zhu Li-Ping , Xu Xiao-Yan , Tan Ling-Ling , Sadilek Martin , Fan Huan , Hu Bo , Shen Xiao-Ting , Yang Jie , Qiao Bin , Yang Song 
Published: September 2016

AbstractTranscriptomic analysis of cultured fungi suggests that many genes for secondary metabolite synthesis are presumably silent under standard laboratory condition. In order to investigate the expression of silent genes in symbiotic systems, 136 fungi-fungi symbiotic systems were built up by co-culturing seventeen basidiomycetes, among which the co-culture of Trametes versicolor and Ganoderma applanatum demonstrated the strongest coloration of confrontation zones. Metabolomics study of this co-culture discovered that sixty-two features were either newly synthesized or highly produced in the co-culture compared with individual cultures. Molecular network analysis highlighted a subnetwork including two novel xylosides (compounds 2 and 3). Compound 2 was further identified as N-(4-methoxyphenyl)formamide 2-O-β-D-xyloside and was revealed to have the potential to enhance the cell viability of human immortalized bronchial epithelial cell line of Beas-2B. Moreover, bioinformatics and transcriptional analysis of T. versicolor revealed a potential candidate gene (GI: 636605689) encoding xylosyltransferases for xylosylation. Additionally, 3-phenyllactic acid and orsellinic acid were detected for the first time in G. applanatum, which may be ascribed to response against T.versicolor stress. In general, the described co-culture platform provides a powerful tool to discover novel metabolites and help gain insights into the mechanism of silent gene activation in fungal defense.
Mutation screening of GRIN2B in schizophrenia and autism spectrum disorder in a Japanese population
Authors: Takasaki Yuto , Koide Takayoshi , Wang Chenyao , Kimura Hiroki , Xing Jingrui , Kushima Itaru , Ishizuka Kanako , Mori Daisuke , Sekiguchi Mariko , Ikeda Masashi , Aizawa Miki , Tsurumaru Naoko , Iwayama Yoshimi , Yoshimi Akira , Arioka Yuko , Yoshida Mami , Noma Hiromi , Oya-Ito Tomoko , Nakamura Yukako , Kunimoto Shohko , Aleksic Branko , Uno Yota , Okada Takashi , Ujike Hiroshi , Egawa Jun , Kuwabara Hitoshi , Someya Toshiyuki , Yoshikawa Takeo , Iwata Nakao , Ozaki Norio 
Published: September 2016

AbstractN-methyl-d-aspartate receptors (NMDARs) play a critical role in excitatory synaptic transmission and plasticity in the central nervous systems. Recent genetics studies in schizophrenia (SCZ) show that SCZ is susceptible to NMDARs and the NMDAR signaling complex. In autism spectrum disorder (ASD), several studies report dysregulation of NMDARs as a risk factor for ASD. To further examine the association between NMDARs and SCZ/ASD development, we conducted a mutation screening study of GRIN2B which encodes NR2B subunit of NMDARs, to identify rare mutations that potentially cause diseases, in SCZ and ASD patients (n = 574 and 152, respectively). This was followed by an association study in a large sample set of SCZ, ASD, and normal healthy controls (n = 4145, 381, and 4432, respectively). We identified five rare missense mutations through the mutation screening of GRIN2B. Although no statistically significant association between any single mutation and SCZ or ASD was found, one of its variant, K1292R, is found only in the patient group. To further examine the association between mutations in GRIN2B and SCZ/ASD development, a larger sample size and functional experiments are needed.
WEE1 inhibition in pancreatic cancer cells is dependent on DNA repair status in a context dependent manner
Authors: Lal Shruti , Zarei Mahsa , Chand Saswati N. , Dylgjeri Emanuela , Mambelli-Lisboa Nicole C. , Pishvaian Michael J. , Yeo Charles J. , Winter Jordan M. , Brody Jonathan R. 
Published: September 2016

AbstractPancreatic ductal adenocarcinoma (PDA) is a lethal disease, in part, because of the lack of effective targeted therapeutic options. MK-1775 (also known as AZD1775), a mitotic inhibitor, has been demonstrated to enhance the anti-tumor effects of DNA damaging agents such as gemcitabine. We evaluated the efficacy of MK-1775 alone or in combination with DNA damaging agents (MMC or oxaliplatin) in PDA cell lines that are either DNA repair proficient (DDR-P) or deficient (DDR-D). PDA cell lines PL11, Hs 766T and Capan-1 harboring naturally selected mutations in DNA repair genes FANCC, FANCG and BRCA2 respectively, were less sensitive to MK-1775 as compared to two out of four representative DDR-P (MIA PaCa2 and PANC-1) cell lines. Accordingly, DDR-P cells exhibit reduced sensitivity to MK-1775 upon siRNA silencing of DNA repair genes, BRCA2 or FANCD2, compared to control cells. Only DDR-P cells showed increased apoptosis as a result of early mitotic entry and catastrophe compared to DDR-D cells. Taken together with other recently published reports, our results add another level of evidence that the efficacy of WEE1 inhibition is influenced by the DNA repair status of a cell and may also be dependent on the tumor type and model evaluated.