bluuebunny/crossref_metadata_2025_split huggingface dataset:
Species diversity and catch per unit effort (CPUE) of Portunidae in Batubara, North Sumatera, Indonesia
Authors: Fairuz N , Qomariyah L , Ervinia A 
Published: October 2024

Abstract
Crabs from the family of Portunidae are distributed widely in Indonesian waters, including the blue swimming crabs which has been exploited as a target species to meet the export demand and economic needs 3 of the capture fisheries sector. Crab catches from Portunidae family makes a major contribution to marine fisheries production in Batubara Regency, North Sumatra, Indonesia. The purpose of this study was to analyze the species diversity and catch per unit effort (CPUE) of crabs of Portunidae family in January–March 2023 in Tanjung Tiram Waters, Batu Bara Regency, North Sumatra, Indonesia. The fishing area was located right across the Malacca Strait, which is congested with international shipping traffic. Data were obtained through observations and community interview. Catch per unit effort (CPUE) of crabs was analyzed. The results showed about five species of crab from the Portunidae family were caught, including Portunus pelagicus, Scylla serrata, Charybdis feriata, Charybdis affinis, and Charybdis natator. The avearga CPUE value of target species Portunus pelagicus was 8,8 kg/trip.
Macrozoobenthos community structure in the Sukabumi estuary, West Java
Authors: Larasati AN , Affandi R , Kamal MM 
Published: October 2024

Abstract
The estuary in the south of Sukabumi is an ecosystem rich in eel fishery resources. Currently, there are several human activities at this location which are expected to affect water quality. Therefore, a macrozoobenthic community structure analysis was carried out to determine the water quality at the estuary in the south of Sukabumi. The aim of this research is to determine the structure of macrozoobenthos communities in river estuaries in the south of Sukabumi. The research was conducted at river estuaries in the south of Sukabumi, including the Cimandiri, Ciletuh, Cibuni, and Cikaso river estuaries. The research was conducted from December 2021 to January 2022, which is the season for eels. The research results showed that there were 12 macrozoobenthos species which were classified into 4 classes (Bivalvia, Gastropoda, Chromadorea, and Polychaeta). The highest density occurred in Ciletuh estuary with a value of 147 ind/m2, while the lowest occurred in the Cimandiri estuary and the Cikaso estuary with a value of 63 ind/m2. The diversity index (H′) ranges from 0.92-2.50 at all stations, indicating the low to medium category. The uniformity index ranges between 0.91-1, classified as moderate to high, and the dominance index ranges between 0.184-0.556, classified as low to moderate. Based on this, it can be seen that there will be pollution at the river mouth in the south of Sukabumi but it will still be at a low to moderate level.
Unexpected social change: The transformation of the Pati Regency’s coastal community due to the Indonesian government’s trawl restriction policy
Authors: Aprian M , Adrianto L , Boer M , Kurniawan F , Nurhijayat A 
Published: October 2024

Abstract
Indonesia’s developmental endeavors, with a focal point on Java Island, presented an overarching concern for the excessive depletion of its coastal and maritime reservoirs. This fundamental notion laid the groundwork for Indonesian governmental actions in 2015 under the stewardship of Minister of Marine Affairs and Fisheries Susi Pujiastuti. During this period, a proactive measure was introduced, entailing the imposition of fishing limitations within the Northern Java Sea vicinity. Embodied within the Ministerial Regulation of Marine Affairs and Fisheries No. 2 of 2015, the restriction of Deploying Trawl and Seine Nets within Indonesian Fishery Management Zones became a tangible manifestation aimed at upholding the preservation of coastal and maritime resources. After an approximate span of eight years since the enforcement of this policy, noteworthy transformations have transpired within the northern Java capture fisheries sector. Comprehensive interviews, meticulous observations, and scrutiny of documents within the Pati Regency (particularly in the Juwana sub-district) within the Central Java province revealed discernible shifts within coastal communities in a relatively brief span. Employing the social-ecological system framework, an analytical lens was cast upon the repercussions of this governmental restriction policy on the circumstances of the Juwana sub-district’s coastal communities, notably the fishermen. The curtailment imposed on fishing apparatus compelled fishermen to modernize and enhance the efficiency of their equipment. The evolving working ethos of the community trended toward collective endeavors and opportunistic pursuit of commercial prospects. Nevertheless, simultaneous challenges surfaced, including societal disparities amidst coastal communities, the marginal involvement of local governance, and the plausible peril of ecosystem detriment beyond the initial boundaries.
Performance of tuna fisheries in the sea of Sikka Regency
Authors: Wini Bhokaleba B P P , Bangkur P H , Widiastuti M M D , Kodiran T 
Published: October 2024

Abstract
The high potential tuna fisheries in Sikka Seas produce high pressure as well. The research objective was to determine the performance of tuna fisheries in managing and utilizing sustainable tuna. The research was conducted for 3 months from December to March 2023 with research locations in Alok, West Alok, East Alok and Talibura Sub-district of Sikka Regency. The choice of research location decided by concentrated area for tuna fisheries. This research used primary and secondary data. Interviewed with 131 tuna fishermen showed the diversity of tuna fisheries in Sikka Regency including the characteristics of fishermen (age, education, number of family, marital status, side job, fishing business experience); targeted catch; vessel; fishing gear and fishing aids device; hauling time; fishing season; fishing grounds; fishing techniques; handling fish on board; and tuna processing company description.
Social-ecological system (SES) mapping of spiny lobster (Panulirus sp.) fisheries in Nasal Coastal Water, Bengkulu
Authors: Manik G R , Zairion Z , Zulfikar A 
Published: October 2024

Abstract
Nasal coast is one of the areas with a fishing sector that includes lobster fishing and falls under the Indonesian Fisheries Management Area 572 (IFMA 572). However, little information on lobster fishery system in this area. This research aims to map the social-ecological system (SES) for the pronghorn spiny lobster (Panulirus penicillatus) in Nasal District, Kaur Regency, Bengkulu. This study conducted from November 2022 to February 2023 using a social-ecological system (SES) approach. The study refers that there are 34 nodes and 55 edges in the lobster fisheries connectivity parameter. The main elements in the lobster fisheries network are fishermen, fishing activity, weather, cost, fishing season, water quality, lobster, catch per unit effort, macro collectors, revenue, and catch. Those components are important in the dynamics of the SES lobster fisheries network (Panulirus spp.) in the coastal waters of Nasal District.
A measurement method for the axial bending deformation of parts with circumferential cycling element based on laser profile sensor
Authors: Wang Bin , Luo Meng-Yan , Zhao Yuan-Zheng , Pei Yong-Chen , Xin Qing-Yuan , Xu Long , Wang Cong-Hui , Wang Zhi-Qiong 
Published: October 2024

Abstract
The cross-section of the CPP (circumferential periodic parts) is composed of fixed shaped elements regularly arranged in the circumferential direction, examples include cylinders, positive prisms, lead screws, gear shafts, and spline shafts, it has applications in many fields. Existing research has not yet proposed a universal method for measuring the axial bending of CPP. This paper presents a non-contact measurement method using a laser profile sensor that is capable of measuring axial bending of CPP. The axis of a shaft part is determined by connecting the geometric center of each cross-section. This method is suitable for measuring the bending deformation of most CPS (circumferential periodic shaft parts). To verify the validity of this method, numerical simulation calculations are conducted on cylinders, hexagonal prisms, and lead screws. Additionally, comparative experiments are performed on lead screws using self-built experimental platform and a measuring projector to investigate the effectiveness and repeatability.
Phase separation induced controllable nanoscale roughness in PS-b-PMMA Di-block copolymer thin films for enhanced anti-reflectivity
Authors: Killada Suresh , Nathani Akash , Karim Alamgir , Sharma Chandra S 
Published: October 2024

Abstract
This study demonstrates a simple method to control surface roughness and, consequently, the optical properties of PS-b-PMMA thin films. By utilizing different solvent combinations and post-treatment steps, we can precisely tune the surface morphology, leading to significant variations in the films’ reflectance and transmittance characteristics. As-fabricated rough and porous PS-b-PMMA thin films exhibited omnidirectional broadband anti-reflective behaviour, with surface roughness values ranging from ∼ 25 nm to 300 nm. Reflectance measurements showed near-zero reflection (as low as 0.045%) for PS-b-PMMA thin films, and transmittance was minimized to 0.7%. This work uniquely demonstrates the ability to tune surface roughness over more than one order of magnitude, from nano to sub-micron scale, using a straightforward and scalable method. The significant reduction in reflectance and transmittance achieved in this study underscores the potential application of these films in optoelectronic devices, marking a notable advancement over existing techniques.
High-entropy oxides as energy materials: from complexity to rational design
Authors: Yang Zhong , Xiang Xianglin , Yang Jian , Zhao Zong-Yan 
Published: October 2024

Abstract
High-entropy oxides (HEOs), with their multi-principal-element compositional diversity, have emerged as promising candidates in the realm of energy materials. This review encapsulates the progress in harnessing HEOs for energy conversion and storage applications, encompassing solar cells, electrocatalysis, photocatalysis, lithium-ion batteries, and solid oxide fuel cells. The critical role of theoretical calculations and simulations is underscored, highlighting their contribution to elucidating material stability, deciphering structure-activity relationships, and enabling performance optimization. These computational tools have been instrumental in multi-scale modeling, high-throughput screening, and integrating artificial intelligence for material design. Despite their promise, challenges such as fabrication complexity, cost, and theoretical computational hurdles impede the broad application of HEOs. To address these, this review delineates future research perspectives. These include the innovation of cost-effective synthesis strategies, employment of in situ characterization for micro-chemical insights, exploration of unique physical phenomena to refine performance, and enhancement of computational models for precise structure-performance predictions. This review calls for interdisciplinary synergy, fostering a collaborative approach between materials science, chemistry, physics, and related disciplines. Collectively, these efforts are poised to propel HEOs towards commercial viability in the new energy technologies, heralding innovative solutions to pressing energy and environmental challenges.
CAPTVRED: an automated pipeline for viral tracking and discovery from capture-based metagenomics samples
Authors: Tarradas-Alemany Maria , Martínez-Puchol Sandra , Mejías-Molina Cristina , Itarte Marta , Rusiñol Marta , Bofill-Mas Sílvia , Abril Josep F 
Published: October 2024

Abstract

Summary
Target Enrichment Sequencing or Capture-based metagenomics has emerged as an approach of interest for viral metagenomics in complex samples. However, these datasets are usually analyzed with standard downstream Bioinformatics analyses. CAPTVRED (Capture-based metagenomics Analysis Pipeline for tracking ViRal species from Environmental Datasets), has been designed to assess the virome present in complex samples, specially focused on those obtained by Target Enrichment Sequencing approach. This work aims to provide a user-friendly tool that complements this sequencing approach for the total or partial virome description, especially from environmental matrices. It includes a setup module which allows preparation and adjustment of the pipeline to any capture panel directed to a set of species of interest. The tool also aims to reduce time and computational cost, as well as to provide comprehensive, reproducible, and accessible results while being easy to costume, set up, and install.

Availability and implementation
Source code and test datasets are freely available at github repository: https://github.com/CompGenLabUB/CAPTVRED.git
Could future ocean acidification be affecting the energy budgets of marine fish?
Authors: Yoon Gwangseok R , Bozai Arsheen , Porteus Cosima S 
Published: October 2024

Abstract
With the unprecedented environmental changes caused by climate change including ocean acidification, it has become crucial to understand the responses and adaptive capacity of fish to better predict directional changes in the ecological landscape of the future. We conducted a systematic literature review to examine if simulated ocean acidification (sOA) could influence growth and reproduction in fish within the dynamic energy budget theory framework. As such, we chose to examine metabolic rate, locomotion, food assimilation and growth in early life stages (i.e. larvae and juvenile) and adults. Our goal was to evaluate if acclimatization to sOA has any directional changes in these traits and to explore potential implications for energetic trade-offs in these for growth and reproduction. We found that sOA had negligible effects on energetic expenditure for maintenance and aerobic metabolism due to the robust physiological capacity regulating acid–base and ion perturbations but substantive effects on locomotion, food assimilation and growth. We demonstrated evidence that sOA significantly reduced growth performance of fish in early life stages, which may have resulted from reduced food intake and digestion efficiency. Also, our results showed that sOA may enhance reproduction with increased numbers of offspring although this may come at the cost of altered reproductive behaviours or offspring fitness. While these results indicate evidence for changes in energy budgets because of physiological acclimatization to sOA, the heterogeneity of results in the literature suggests that physiological and neural mechanisms need to be clearly elucidated in future studies. Lastly, most studies on sOA have been conducted on early life stages, which necessitates that more studies should be conducted on adults to understand reproductive success and thus better predict cohort and population dynamics under ongoing climate change.
The plasma proteome reveals markers of recent and repeated stress in free-ranging seals
Authors: Avalos Jessica G , Champagne Cory D , Crocker Dan E , Khudyakov Jane I 
Published: October 2024

Abstract
Animals in nature potentially experience multiple stressors, and those of anthropogenic origin are likely to be repeated or chronic. However, stress hormone levels are highly context-dependent and are not consistent predictors of chronic stress in wildlife. Profiling the downstream consequences of repeated stress responses, such as changes in metabolism or gene expression, may be more informative for predicting their individual-level health consequences and population-level impacts, which are key objectives for wildlife conservation. We previously found that in free-ranging juvenile elephant seals, the blubber transcriptome and proteome, but not cortisol levels, could distinguish between responses to single versus repeated stress axis stimulation. However, the blubber proteome response to stress was limited and mainly involved extra-cellular matrix proteins. In this study, we examined the plasma proteome response of four of the same animals to the repeated stress experiment, since multiple organs secrete proteins into the circulation, providing a readout of their activity and integration. We isolated plasma proteins, identified and quantified them using liquid chromatography and tandem mass spectrometry (LC–MS/MS) and compared their abundance between sampling times. We identified &gt;200 proteins in plasma, of which 42 were altered in abundance, revealing complex protein dynamics in response to repeated stress challenges. These changes were delayed but sustained, suggesting that the plasma proteome may reflect longer term integration of multi-organ responses to recent, rather than immediate, challenges. Differentially abundant proteins included components of the osmoregulatory system, acute phase and complement proteins, organokines, apolipoproteins and hormone transport proteins, which coordinate physiological processes with significant implications for marine mammal health and may explain several aspects of marine mammal stress physiology, such as insulin resistance and high aldosterone levels. We identified several potentially novel biomarkers, such as AGT, HPX, TTR and APOA4, that may be useful for detecting recent and repeated stress exposure in marine mammals.
Generative artificial intelligence and ELT
Authors: Cogo Alessia , Patsko Laura , Szoke Joanna 
Published: October 2024

Abstract
There is undoubtedly, and understandably, a growing interest in incorporating generative artificial intelligence (GenAI) technologies into ELT. While advanced AI models have the potential to support language education, offering new tools and resources to enhance learning, their use also raises important questions regarding ethics and responsibility. As we follow the emergence of GenAI as another ELT tool, it is crucial to strike a balance between leveraging the benefits of these technologies and maintaining the core values of effective pedagogy. Educators must develop clear guidelines and best practices for the responsible integration of AI in the classroom, ensuring that it enhances rather than replaces human interaction and critical thinking. In this Special Issue on GenAI and ELT we explore some of the applications, their potential, and the challenges of incorporating GenAI in ELT.
Land use effects on soil microbiome composition and traits with consequences for soil carbon cycling
Authors: Cole Lisa , Goodall Tim , Jehmlich Nico , Griffiths Robert I , Gleixner Gerd , Gubry-Rangin Cecile , Malik Ashish A 
Published: October 2024

Abstract
The soil microbiome determines the fate of plant-fixed carbon. The shifts in soil properties caused by land use change leads to modifications in microbiome function, resulting in either loss or gain of soil organic carbon (SOC). Soil pH is the primary factor regulating microbiome characteristics leading to distinct pathways of microbial carbon cycling, but the underlying mechanisms remain understudied. Here, the taxa-trait relationships behind the variable fate of SOC were investigated using metaproteomics, metabarcoding, and a 13C-labeled litter decomposition experiment across two temperate sites with differing soil pH each with a paired land use intensity contrast. 13C incorporation into microbial biomass increased with land use intensification in low-pH soil but decreased in high-pH soil, with potential impact on carbon use efficiency in opposing directions. Reduction in biosynthesis traits was due to increased abundance of proteins linked to resource acquisition and stress tolerance. These trait trade-offs were underpinned by land use intensification-induced changes in dominant taxa with distinct traits. We observed divergent pH-controlled pathways of SOC cycling. In low-pH soil, land use intensification alleviates microbial abiotic stress resulting in increased biomass production but promotes decomposition and SOC loss. In contrast, in high-pH soil, land use intensification increases microbial physiological constraints and decreases biomass production, leading to reduced necromass build-up and SOC stabilization. We demonstrate how microbial biomass production and respiration dynamics and therefore carbon use efficiency can be decoupled from SOC highlighting the need for its careful consideration in managing SOC storage for soil health and climate change mitigation.
Comparing public health-related material in print and web page versions of legacy media
Authors: Gaba Ann , Bennett Richard 
Published: October 2024

Abstract

Objectives
The objectives of this study were to create a database of public health content from a sample of legacy media, and to compare the prevalence of public health themes in print and web-based versions over time.

Materials and Methods
A database was created from eleven nationally published magazines as a sample of legacy media content. Relevant material was extracted and coded by the title of the article, periodical, print or web edition, month of publication, item type, and 1-3 public health theme codes.

Results
Theme codes emerged as the documents were reviewed based on the primary discussion in each piece. A total of 2558 unique documents were extracted from print issues and 6440 from web-based issues. Seventeen public health themes were identified. Individual coded documents were saved with file names identical to the code string, thus creating a searchable database.

Discussion
Legacy media are those that existed before the internet and social media. Publishers target readership groups defined by age, gender, race, sexual orientation, and other commonalities. Although legacy media have been identified as trusted sources of health information, they have not been examined as sources of public health communication. Because both print and web-based versions exist as unstructured textual data, these are rarely examined with informatics methods.

Conclusion
The process described can serve as a model for application of informatics approaches to similar data and assist development of targeted public health communications. Having a better understanding of what types of health content is distributed through legacy media can help to target health messages to specific demographic and interest groups in ways that are understandable and appealing to them.
Ileal intussusception due to heterotopic pancreas in the ileum: a case report
Authors: Cammarata Francesco , Yakushkina Al’ona , Aguzzi Martina , Guerci Claudio , Fioritti Niccolò , Danelli Piergiorgio 
Published: October 2024

Abstract
Heterotopic pancreas (HP) is a rare condition where pancreatic tissue is found outside its usual location, usually within the gastrointestinal tract. While typically asymptomatic, HP can cause complications like gastrointestinal bleeding and intussusception, especially in adults, posing diagnostic and therapeutic challenges. A 31-year-old male presented with severe abdominal pain, nausea, and vomiting. Initial imaging revealed significant ileal and cecal wall thickening. Despite antibiotic therapy, his condition worsened, necessitating exploratory laparotomy. Intraoperative findings showed ileal intussusception near the cecum, leading to ileocecal resection and ileo-colic anastomosis. Pathological examination confirmed HP as the cause of intussusception. This case underscores the importance of considering HP in adult intussusception. Timely surgical intervention is critical to prevent severe complications. At a two-year follow-up, he remained symptom-free, highlighting the necessity for prompt diagnosis and management.