bluuebunny/crossref_metadata_2025_split huggingface dataset:
Forest foods and healthy diets: quantifying the contributions
Authors: ROWLAND DOMINIC , ICKOWITZ AMY , POWELL BRONWEN , NASI ROBERT , SUNDERLAND TERRY 
Published: October 2016

SUMMARYForested landscapes provide a source of micronutrient rich food for millions of people around the world. A growing evidence base suggests these foods may be of great importance to the dietary quality of people living in close proximity to forests – especially in communities with poor access to markets. Despite widespread evidence of the consumption of forest foods around the world, to date, few studies have attempted to quantify the nutritional contributions these foods make. In this study we tested the hypothesis that the consumption of forest foods can make important contributions to dietary quality. We investigated the dietary contributions of wild forest foods in smallholder dominated forested landscapes from 37 sites in 24 tropical countries, using data from the Poverty and Environment Network (PEN). We compared quantities of forest foods consumed by households with dietary recommendations and national average consumption patterns. In addition, we compared the relative importance of forests and smallholder agriculture in supplying fruits, vegetables, meat and fish for household consumption. More than half of the households in our sample collected forest foods for their own consumption, though consumption patterns were skewed towards low-quantity users. For high-quantity consuming households, however, forest foods made a substantial contributions to their diets. The top quartile of forest food users in each site obtained 14.8% of the recommended amounts of fruits and vegetables, and 106% of the reference quantity of meat and fish from forests. In 13 sites, the proportion of meat and fish coming from forests was greater than from domestic livestock and aquaculture, while in 11 sites, households procured a greater proportion of fruits and vegetables from forests than from agriculture. Given high levels of heterogeneity in forest food consumption, we identify four forest food use site typologies to characterize the different use patterns: ‘forest food dependent’, ‘limited forest food use’, ‘forest food supplementation’ and ‘specialist forest food consumer’ sites. Our results suggest that while forest foods do not universally contribute significantly to diets, in some sites where large quantities of forest foods are consumed, their contribution towards dietary adequacy is substantial.
Differences inNeisseria gonorrhoeaepopulation structure and antimicrobial resistance pattern between men who have sex with men and heterosexuals
Authors: SERRA-PLADEVALL J. , BARBERÁ M. J. , CALLARISA A. E. , BARTOLOMÉ-COMAS R. , ANDREU A. 
Published: October 2016

SUMMARYThis study compared the antimicrobial susceptibility and genotypes of strains ofNeisseria gonorrhoeaeisolated from men who have sex with men (MSM) and from heterosexuals. One hundred and eleven strains were characterized from 107 patients, comprising 57 strains from 54 heterosexuals and 54 strains from 53 MSM. Antimicrobial resistance rates were higher in strains from heterosexual patients, with resistance to cefixime (P= 0·0159) and ciprofloxacin (P= 0·002) being significantly higher. Typing byN. gonorrhoeaemulti-antigen sequence typing (NG-MAST) showed that the most prevalent sequence types (ST) and genogroups (G) respectively were ST2400, ST2992, and ST5793, and G1407, G2992, and G2400. A statistically significant association was observed for MSM and genogroups G2400 (P= 0·0005) and G2992 (P= 0·0488), and G1407 with heterosexuals (P= 0·0002). We conclude that in our region distinct populations of gonococci are circulating among subjects with different sexual practices, with their corresponding transmission patterns. Furthermore, the high prevalence of genotype G2400 in MSM, has not to our knowledge been previously described.
Orphan GPR110 (ADGRF1) targeted by N-docosahexaenoylethanolamine in development of neurons and cognitive function
Authors: Lee Ji-Won , Huang Bill X. , Kwon HeungSun , Rashid Md Abdur , Kharebava Giorgi , Desai Abhishek , Patnaik Samarjit , Marugan Juan , Kim Hee-Yong 
Published: October 2016

AbstractDocosahexaenoic acid (DHA, 22:6n-3) is an omega-3 fatty acid essential for proper brain development. N-docosahexaenoylethanolamine (synaptamide), an endogenous metabolite of DHA, potently promotes neurogenesis, neuritogenesis and synaptogenesis; however, the underlying molecular mechanism is not known. Here, we demonstrate orphan G-protein coupled receptor 110 (GPR110, ADGRF1) as the synaptamide receptor, mediating synaptamide-induced bioactivity in a cAMP-dependent manner. Mass spectrometry-based proteomic characterization and cellular fluorescence tracing with chemical analogues of synaptamide reveal specific binding of GPR110 to synaptamide, which triggers cAMP production with low nM potency. Disruption of this binding or GPR110 gene knockout abolishes while GPR110 overexpression enhances synaptamide-induced bioactivity. GPR110 is highly expressed in fetal brains but rapidly decreases after birth. GPR110 knockout mice show significant deficits in object recognition and spatial memory. GPR110 deorphanized as a functional synaptamide receptor provides a novel target for neurodevelopmental control and new insight into mechanisms by which DHA promotes brain development and function.
Precise localization of metal nanoparticles in dendrimer nanosnakes or inner periphery and consequences in catalysis
Authors: Liu Xiang , Gregurec Danijela , Irigoyen Joseba , Martinez Angel , Moya Sergio , Ciganda Roberto , Hermange Philippe , Ruiz Jaime , Astruc Didier 
Published: October 2016

AbstractUnderstanding the relationship between the location of nanoparticles (NPs) in an organic matrix and their catalytic performances is essential for catalyst design. Here we show that catalytic activities of Au, Ag and CuNPs stabilized by dendrimers using coordination to intradendritic triazoles, galvanic replacement or stabilization outside dendrimers strongly depends on their location. AgNPs are found at the inner click dendrimer periphery, whereas CuNPs and AuNPs are encapsulated in click dendrimer nanosnakes. AuNPs and AgNPs formed by galvanic replacement are larger than precursors and only partly encapsulated. AuNPs are all the better 4-nitrophenol reduction catalysts as they are less sterically inhibited by the dendrimer interior, whereas on the contrary CuNPs are all the better alkyne azide cycloaddition catalysts as they are better protected from aerobic oxidation inside dendrimers. This work highlights the role of the location in macromolecules on the catalytic efficiency of metal nanoparticles and rationalizes optimization in catalyst engineering.
SIKs control osteocyte responses to parathyroid hormone
Authors: Wein Marc N. , Liang Yanke , Goransson Olga , Sundberg Thomas B. , Wang Jinhua , Williams Elizabeth A. , O’Meara Maureen J. , Govea Nicolas , Beqo Belinda , Nishimori Shigeki , Nagano Kenichi , Brooks Daniel J. , Martins Janaina S. , Corbin Braden , Anselmo Anthony , Sadreyev Ruslan , Wu Joy Y. , Sakamoto Kei , Foretz Marc , Xavier Ramnik J. , Baron Roland , Bouxsein Mary L. , Gardella Thomas J. , Divieti-Pajevic Paola , Gray Nathanael S. , Kronenberg Henry M. 
Published: October 2016

AbstractParathyroid hormone (PTH) activates receptors on osteocytes to orchestrate bone formation and resorption. Here we show that PTH inhibition of SOST (sclerostin), a WNT antagonist, requires HDAC4 and HDAC5, whereas PTH stimulation of RANKL, a stimulator of bone resorption, requires CRTC2. Salt inducible kinases (SIKs) control subcellular localization of HDAC4/5 and CRTC2. PTH regulates both HDAC4/5 and CRTC2 localization via phosphorylation and inhibition of SIK2. Like PTH, new small molecule SIK inhibitors cause decreased phosphorylation and increased nuclear translocation of HDAC4/5 and CRTC2. SIK inhibition mimics many of the effects of PTH in osteocytes as assessed by RNA-seq in cultured osteocytes and following in vivo administration. Once daily treatment with the small molecule SIK inhibitor YKL-05-099 increases bone formation and bone mass. Therefore, a major arm of PTH signalling in osteocytes involves SIK inhibition, and small molecule SIK inhibitors may be applied therapeutically to mimic skeletal effects of PTH.
Ocean feedback to pulses of the Madden–Julian Oscillation in the equatorial Indian Ocean
Authors: Moum James N. , Pujiana Kandaga , Lien Ren-Chieh , Smyth William D. 
Published: October 2016

AbstractDynamical understanding of the Madden–Julian Oscillation (MJO) has been elusive, and predictive capabilities therefore limited. New measurements of the ocean’s response to the intense surface winds and cooling by two successive MJO pulses, separated by several weeks, show persistent ocean currents and subsurface mixing after pulse passage, thereby reducing ocean heat energy available for later pulses by an amount significantly greater than via atmospheric surface cooling alone. This suggests that thermal mixing in the upper ocean from a particular pulse might affect the amplitude of the following pulse. Here we test this hypothesis by comparing 18 pulse pairs, each separated by <55 days, measured over a 33-year period. We find a significant tendency for weak (strong) pulses, associated with low (high) cooling rates, to be followed by stronger (weaker) pulses. We therefore propose that the ocean introduces a memory effect into the MJO, whereby each event is governed in part by the previous event.
Robust ultra-low-friction state of graphene via moiré superlattice confinement
Authors: Zheng Xiaohu , Gao Lei , Yao Quanzhou , Li Qunyang , Zhang Miao , Xie Xiaoming , Qiao Shan , Wang Gang , Ma Tianbao , Di Zengfeng , Luo Jianbin , Wang Xi 
Published: October 2016

AbstractTwo-dimensional (2D) materials possess outstanding lubrication property with their thicknesses down to a few atomic layers, but they are easily susceptible to sliding induced degradation or ubiquitous chemical modification. Maintaining the superior lubricating performance of 2D materials in a harsh working environment is highly desirable yet grandly challenging. Here we show that by proper alignment of graphene on a Ge(111) substrate, friction of graphene could be well preserved at an ultra-low level even after fluorination or oxidation. This behaviour is experimentally found to be closely related to the suppression of molecular-level deformation of graphene within the moiré superlattice structure. Atomistic simulations reveal that the formation of an interconnected meshwork with enhanced interfacial charge density imposes a strong anchoring effect on graphene even under chemical modification. Modulating molecular-level deformation by interfacial confinements may offer a unique strategy for tuning the mechanical or even chemical properties of 2D materials.
Stacking sequence and interlayer coupling in few-layer graphene revealed by in situ imaging
Authors: Wang Zhu-Jun , Dong Jichen , Cui Yi , Eres Gyula , Timpe Olaf , Fu Qiang , Ding Feng , Schloegl R. , Willinger Marc-Georg 
Published: October 2016

AbstractIn the transition from graphene to graphite, the addition of each individual graphene layer modifies the electronic structure and produces a different material with unique properties. Controlled growth of few-layer graphene is therefore of fundamental interest and will provide access to materials with engineered electronic structure. Here we combine isothermal growth and etching experiments with in situ scanning electron microscopy to reveal the stacking sequence and interlayer coupling strength in few-layer graphene. The observed layer-dependent etching rates reveal the relative strength of the graphene–graphene and graphene–substrate interaction and the resulting mode of adlayer growth. Scanning tunnelling microscopy and density functional theory calculations confirm a strong coupling between graphene edge atoms and platinum. Simulated etching confirms that etching can be viewed as reversed growth. This work demonstrates that real-time imaging under controlled atmosphere is a powerful method for designing synthesis protocols for sp2 carbon nanostructures in between graphene and graphite.
Nanopore sequencing in microgravity
Authors: McIntyre Alexa B R , Rizzardi Lindsay , Yu Angela M , Alexander Noah , Rosen Gail L , Botkin Douglas J , Stahl Sarah E , John Kristen K , Castro-Wallace Sarah L , McGrath Ken , Burton Aaron S , Feinberg Andrew P , Mason Christopher E 
Published: October 2016

AbstractRapid DNA sequencing and analysis has been a long-sought goal in remote research and point-of-care medicine. In microgravity, DNA sequencing can facilitate novel astrobiological research and close monitoring of crew health, but spaceflight places stringent restrictions on the mass and volume of instruments, crew operation time, and instrument functionality. The recent emergence of portable, nanopore-based tools with streamlined sample preparation protocols finally enables DNA sequencing on missions in microgravity. As a first step toward sequencing in space and aboard the International Space Station (ISS), we tested the Oxford Nanopore Technologies MinION during a parabolic flight to understand the effects of variable gravity on the instrument and data. In a successful proof-of-principle experiment, we found that the instrument generated DNA reads over the course of the flight, including the first ever sequenced in microgravity, and additional reads measured after the flight concluded its parabolas. Here we detail modifications to the sample-loading procedures to facilitate nanopore sequencing aboard the ISS and in other microgravity environments. We also evaluate existing analysis methods and outline two new approaches, the first based on a wave-fingerprint method and the second on entropy signal mapping. Computationally light analysis methods offer the potential for in situ species identification, but are limited by the error profiles (stays, skips, and mismatches) of older nanopore data. Higher accuracies attainable with modified sample processing methods and the latest version of flow cells will further enable the use of nanopore sequencers for diagnostics and research in space.
Chronic stress prior to pregnancy potentiated long-lasting postpartum depressive-like behavior, regulated by Akt-mTOR signaling in the hippocampus
Authors: Xia Baomei , Chen Chang , Zhang Hailou , Xue Wenda , Tang Juanjuan , Tao Weiwei , Wu Ruyan , Ren Li , Wang Wei , Chen Gang 
Published: October 2016

AbstractPostpartum depression (PPD) affects over 10% of new mothers and adversely impacts the health of offspring. One of the greatest risk factors for PPD is prepregnancy stress but the underlying biological mechanism is unknown. Here we constructed an animal model which recapitulated prepregnancy stress induced PPD and tested the role of Akt-mTOR signaling in the hippocampus. Female virgin Balb/c mice received chronic restraint stress, followed by co-housing with a normal male mouse. We found that the chronic stress led to a transient depressive-like condition that disappeared within two weeks. However, prepregnantly stressed females developed long-term postpartum depressive-like (PPD-like) symptoms as indicated by deficient performance in tests of sucrose preference, forced swim, and novelty-suppressed feeding. Chronic stress induced transient decrease in Akt-mTOR signaling and altered expressions of glutamate receptor subunits NR1 and GluR1, in contrast to long-term deficits in Akt-mTOR signaling, GluR1/NR1 ratio, and hippocampal neurogenesis in PPD-like mice. Acute ketamine improved the molecular signaling abnormality, and reversed the behavioral deficits in PPD-like mice in a rapid and persistent manner, in contrast to ineffectiveness by chronic fluoxetine treatment. Taken together, we find that chronic prepregnancy stress potentiates a long-term PPD, in which Akt-mTOR signaling may play a crucial role.
MPP2 is a postsynaptic MAGUK scaffold protein that links SynCAM1 cell adhesion molecules to core components of the postsynaptic density
Authors: Rademacher Nils , Schmerl Bettina , Lardong Jennifer A. , Wahl Markus C. , Shoichet Sarah A. 
Published: October 2016

AbstractAt neuronal synapses, multiprotein complexes of trans-synaptic adhesion molecules, scaffold proteins and neurotransmitter receptors assemble to essential building blocks required for synapse formation and maintenance. Here we describe a novel role for the membrane-associated guanylate kinase (MAGUK) protein MPP2 (MAGUK p55 subfamily member 2) at synapses of rat central neurons. Through interactions mediated by its C-terminal SH3-GK domain module, MPP2 binds to the abundant postsynaptic scaffold proteins PSD-95 and GKAP and localises to postsynaptic sites in hippocampal neurons. MPP2 also colocalises with the synaptic adhesion molecule SynCAM1. We demonstrate that the SynCAM1 C-terminus interacts directly with the MPP2 PDZ domain and that MPP2 does not interact in this manner with other highly abundant postsynaptic transmembrane proteins. Our results highlight a previously unexplored role for MPP2 at postsynaptic sites as a scaffold that links SynCAM1 cell adhesion molecules to core proteins of the postsynaptic density.
Octopamine controls starvation resistance, life span and metabolic traits in Drosophila
Authors: Li Yong , Hoffmann Julia , Li Yang , Stephano Flora , Bruchhaus Iris , Fink Christine , Roeder Thomas 
Published: October 2016

AbstractThe monoamines octopamine (OA) and tyramine (TA) modulate numerous behaviours and physiological processes in invertebrates. Nevertheless, it is not clear whether these invertebrate counterparts of norepinephrine are important regulators of metabolic and life history traits. We show that flies (Drosophila melanogaster) lacking OA are more resistant to starvation, while their overall life span is substantially reduced compared with control flies. In addition, these animals have increased body fat deposits, reduced physical activity and a reduced metabolic resting rate. Increasing the release of OA from internal stores induced the opposite effects. Flies devoid of both OA and TA had normal body fat and metabolic rates, suggesting that OA and TA act antagonistically. Moreover, OA-deficient flies show increased insulin release rates. We inferred that the OA-mediated control of insulin release accounts for a substantial proportion of the alterations observed in these flies. Apparently, OA levels control the balance between thrifty and expenditure metabolic modes. Thus, changes in OA levels in response to external and internal signals orchestrate behaviour and metabolic processes to meet physiological needs. Moreover, chronic deregulation of the corresponding signalling systems in humans may be associated with metabolic disorders, such as obesity or diabetes.
CDK4 regulates cancer stemness and is a novel therapeutic target for triple-negative breast cancer
Authors: Dai Meiou , Zhang Chenjing , Ali Ayad , Hong Xinyuan , Tian Jun , Lo Chieh , Fils-Aimé Nadège , Burgos Sergio A. , Ali Suhad , Lebrun Jean-Jacques 
Published: October 2016

AbstractTriple negative breast cancers exhibit very aggressive features and poor patient outcomes. These tumors are enriched in cancer stem cells and exhibit resistance to most treatments and chemotherapy. In this study, we found the cyclin-dependent kinase (CDK4) to act as a cancer stem cell regulator and novel prognostic marker in triple negative breast cancers. We found CDK4 to be highly expressed in these tumors and its expression to correlate with poor overall and relapse free survival outcomes, high tumor grade and poor prognostic features of triple negative breast cancer patients. Moreover, we found that blocking CDK4 expression or kinase activity, using a pharmacological inhibitor prevented breast cancer stem cell self-renewal. Interestingly, suppression of CDK4 expression or kinase activity reversed the basal-B TNBC mesenchymal phenotype to an epithelial- and luminal-like phenotype which correlates with better clinical prognosis. Finally, blocking CDK4 activity efficiently eliminated both normal and chemotherapy-resistant cancer cells in triple negative breast cancers, highlighting CDK4 as a promising novel therapeutic target for these aggressive breast tumors.
Realizing the measure-device-independent quantum-key-distribution with passive heralded-single photon sources
Authors: Wang Qin , Zhou Xing-Yu , Guo Guang-Can 
Published: October 2016

AbstractIn this paper, we put forward a new approach towards realizing measurement-device-independent quantum key distribution with passive heralded single-photon sources. In this approach, both Alice and Bob prepare the parametric down-conversion source, where the heralding photons are labeled according to different types of clicks from the local detectors, and the heralded ones can correspondingly be marked with different tags at the receiver’s side. Then one can obtain four sets of data through using only one-intensity of pump light by observing different kinds of clicks of local detectors. By employing the newest formulae to do parameter estimation, we could achieve very precise prediction for the two-single-photon pulse contribution. Furthermore, by carrying out corresponding numerical simulations, we compare the new method with other practical schemes of measurement-device-independent quantum key distribution. We demonstrate that our new proposed passive scheme can exhibit remarkable improvement over the conventional three-intensity decoy-state measurement-device-independent quantum key distribution with either heralded single-photon sources or weak coherent sources. Besides, it does not need intensity modulation and can thus diminish source-error defects existing in several other active decoy-state methods. Therefore, if taking intensity modulating errors into account, our new method will show even more brilliant performance.
Single and Transient Ca2+ Peaks in Podocytes do not induce Changes in Glomerular Filtration and Perfusion
Authors: Koehler Sybille , Brähler Sebastian , Kuczkowski Alexander , Binz Julia , Hackl Matthias J. , Hagmann Henning , Höhne Martin , Vogt Merly C. , Wunderlich Claudia M. , Wunderlich F. Thomas , Schweda Frank , Schermer Bernhard , Benzing Thomas , Brinkkoetter Paul T. 
Published: October 2016

AbstractChronic alterations in calcium (Ca2+) signalling in podocytes have been shown to cause proteinuria and progressive glomerular diseases. However, it is unclear whether short Ca2+ peaks influence glomerular biology and cause podocyte injury. Here we generated a DREADD (Designer Receptor Exclusively Activated by a Designer Drug) knock-in mouse line to manipulate intracellular Ca2+ levels. By mating to a podocyte-specific Cre driver we are able to investigate the impact of Ca2+ peaks on podocyte biology in living animals. Activation of the engineered G-protein coupled receptor with the synthetic compound clozapine-N-oxide (CNO) evoked a short and transient Ca2+ peak in podocytes immediately after CNO administration in vivo. Interestingly, this Ca2+ peak did neither affect glomerular perfusion nor filtration in the animals. Moreover, no obvious alterations in the glomerular morphology could be observed. Taken together, these in vivo findings suggest that chronic alterations and calcium overload rather than an induction of transient Ca2+ peaks contribute to podocyte disease.