bluuebunny/crossref_metadata_2025_split huggingface dataset:
Plasmonic Gold Nanorods Coverage Influence on Enhancement of the Photoluminescence of Two-Dimensional MoS2 Monolayer
Authors: Lee Kevin C. J. , Chen Yi-Huan , Lin Hsiang-Yu , Cheng Chia-Chin , Chen Pei-Ying , Wu Ting-Yi , Shih Min-Hsiung , Wei Kung-Hwa , Li Lain-Jong , Chang Chien-Wen 
Published: November 2015

AbstractThe 2-D transition metal dichalcogenide (TMD) semiconductors, has received great attention due to its excellent optical and electronic properties and potential applications in field-effect transistors, light emitting and sensing devices. Recently surface plasmon enhanced photoluminescence (PL) of the weak 2-D TMD atomic layers was developed to realize the potential optoelectronic devices. However, we noticed that the enhancement would not increase monotonically with increasing of metal plasmonic objects and the emission drop after the certain coverage. This study presents the optimized PL enhancement of a monolayer MoS2 in the presence of gold (Au) nanorods. A localized surface plasmon wave of Au nanorods that generated around the monolayer MoS2 can provide resonance wavelength overlapping with that of the MoS2 gain spectrum. These spatial and spectral overlapping between the localized surface plasmon polariton waves and that from MoS2 emission drastically enhanced the light emission from the MoS2 monolayer. We gave a simple model and physical interpretations to explain the phenomena. The plasmonic Au nanostructures approach provides a valuable avenue to enhancing the emitting efficiency of the 2-D nano-materials and their devices for the future optoelectronic devices and systems.
Controls and constrains of the membrane disrupting action of Aurein 1.2
Authors: Shahmiri Mahdi , Enciso Marta , Mechler Adam 
Published: November 2015

AbstractAurein 1.2 is a 13 residue antimicrobial peptide secreted by the Australian tree frog Litoria Aurea. It is a surface-acting membrane disrupting peptide that permeabilizes bacterial membranes via the carpet mechanism; the molecular details of this process are mostly unknown. Here the mechanism of action of Aurein 1.2 was investigated with an emphasis on the role of membrane charge and C-terminal amidation of the peptide. Using quartz crystal microbalance (QCM) fingerprinting it was found that the membrane charge correlates with membrane affinity of the peptide, however the binding and the membrane disrupting processes are not charge driven; increased membrane charge reduces the membrane disrupting activity. Coarse grain simulations revealed that phenylalanine residues act as membrane anchors. Accordingly Aurein 1.2 has the ability to bind to any membrane. Furthermore, bundling precludes membrane disruption in case of wild type peptides, while non C-terminal amidated peptides form random aggregates leading to detachment from the membrane. Hence C-terminal amidation is crucial for Aurein 1.2 action. Our results suggest that Aurein 1.2 acts via aggregation driven membrane penetration. The concomitant change in the tension of the outer leaflet imposes a spontaneous curvature on the membrane, leading to disintegration.
Simultaneous measurement of electroencephalography and near-infrared spectroscopy during voluntary motor preparation
Authors: Zama Takuro , Shimada Sotaro 
Published: November 2015

AbstractWe investigated the relationship between electrophysiological activity and haemodynamic response during motor preparation by simultaneous recording of electroencephalography (EEG) and near-infrared spectroscopy (NIRS). It is still unknown how exactly EEG signals correlate with the haemodynamic response, although the activation in the premotor area during motor preparation has been captured by EEG and haemodynamic approaches separately. We conducted EEG-NIRS simultaneous recordings over the sensorimotor area with a self-paced button press task. Participants were instructed to press a button at their own pace after a cue was shown. The result showed that the readiness potential (RP), a negative slow potential shift occurring during motor preparation, on C3 in the extended 10–20 system occurred about 1000 ms before the movement onset. An increase in concentration of oxyhaemoglobin (oxyHb) in the premotor cortex during motor preparation was also confirmed by NIRS, which resulted in a significant correlation between the amplitude of the RP and the change in oxyHb concentration (Pearson’s correlation r2 = 0.235, p = 0.03). We show that EEG-NIRS simultaneous recording can demonstrate the correlation between the RP and haemodynamic response in the premotor cortex contralateral to the performing hand.
Detection of early blight and late blight diseases on tomato leaves using hyperspectral imaging
Authors: Xie Chuanqi , Shao Yongni , Li Xiaoli , He Yong 
Published: November 2015

AbstractThis study investigated the potential of using hyperspectral imaging for detecting different diseases on tomato leaves. One hundred and twenty healthy, one hundred and twenty early blight and seventy late blight diseased leaves were selected to obtain hyperspectral images covering spectral wavelengths from 380 to 1023 nm. An extreme learning machine (ELM) classifier model was established based on full wavelengths. Successive projections algorithm (SPA) was used to identify the most important wavelengths. Based on the five selected wavelengths (442, 508, 573, 696 and 715 nm), an ELM model was re-established. Then, eight texture features (mean, variance, homogeneity, contrast, dissimilarity, entropy, second moment and correlation) based on gray level co-occurrence matrix (GLCM) at the five effective wavelengths were extracted to establish detection models. Among the models which were established based on spectral information, all performed excellently with the overall classification accuracy ranging from 97.1% to 100% in testing sets. Among the eight texture features, dissimilarity, second moment and entropy carried most of the effective information with the classification accuracy of 71.8%, 70.9% and 69.9% in the ELM models. The results demonstrated that hyperspectral imaging has the potential as a non-invasive method to identify early blight and late blight diseases on tomato leaves.
Investigation of Pathogenic Genes in Chinese sporadic Hypertrophic Cardiomyopathy Patients by Whole Exome Sequencing
Authors: Xu Jing , Li Zhongshan , Ren Xianguo , Dong Ming , Li Jinxin , Shi Xingjuan , Zhang Yu , Xie Wei , Sun Zhongsheng , Liu Xiangdong , Dai Qiming 
Published: November 2015

AbstractHypertrophic cardiomyopathy (HCM) is a cardiovascular disease with high heterogeneity. Limited knowledge concerning the genetic background of nearly 40% HCM cases indicates there is a clear need for further investigation to explore the genetic pathogenesis of the disease. In this study, we undertook a whole exome sequencing (WES) approach to identify novel candidate genes and mutations associated with HCM. The cohort consisted of 74 unrelated patients with sporadic HCM (sHCM) previously determined to be negative for mutations in eight sarcomere genes. The results showed that 7 of 74 patients (9.5%) had damaging mutations in 43 known HCM disease genes. Furthermore, after analysis combining the Transmission and De novo Association (TADA) program and the ToppGene program, 10 putative genes gained priority. A thorough review of public databases and related literature revealed that there is strong supporting evidence for most of the genes playing roles in various aspects of heart development. Findings from recent studies suggest that the putative and known disease genes converge on three functional pathways: sarcomere function, calcium signaling and metabolism pathway. This study illustrates the benefit of WES, in combination with rare variant analysis tools, in providing valuable insight into the genetic etiology of a heterogeneous sporadic disease.
Desolvation-Driven 100-Fold Slow-down of Tunneling Relaxation Rate in Co(II)-Dy(III) Single-Molecule Magnets through a Single-Crystal-to-Single-Crystal Process
Authors: Liu Jun-Liang , Wu Jie-Yi , Huang Guo-Zhang , Chen Yan-Cong , Jia Jian-Hua , Ungur Liviu , Chibotaru Liviu F. , Chen Xiao-Ming , Tong Ming-Liang 
Published: November 2015

AbstractSingle-molecule magnets (SMMs) are regarded as a class of promising materials for spintronic and ultrahigh-density storage devices. Tuning the magnetic dynamics of single-molecule magnets is a crucial challenge for chemists. Lanthanide ions are not only highly magnetically anisotropic but also highly sensitive to the changes in the coordination environments. We developed a feasible approach to understand parts of the magneto-structure correlations and propose to regulate the relaxation behaviors via rational design. A series of Co(II)-Dy(III)-Co(II) complexes were obtained using in situ synthesis; in this system of complexes, the relaxation dynamics can be greatly improved, accompanied with desolvation, via single-crystal to single-crystal transformation. The effective energy barrier can be increased from 293 cm−1 (422 K) to 416 cm−1 (600 K) and the tunneling relaxation time can be grown from 8.5 × 10−4 s to 7.4 × 10−2 s. These remarkable improvements are due to the change in the coordination environments of Dy(III) and Co(II). Ab initio calculations were performed to better understand the magnetic dynamics.
Long-term maintenance of human induced pluripotent stem cells by automated cell culture system
Authors: Konagaya Shuhei , Ando Takeshi , Yamauchi Toshiaki , Suemori Hirofumi , Iwata Hiroo 
Published: November 2015

AbstractPluripotent stem cells, such as embryonic stem cells and induced pluripotent stem (iPS) cells, are regarded as new sources for cell replacement therapy. These cells can unlimitedly expand under undifferentiated conditions and be differentiated into multiple cell types. Automated culture systems enable the large-scale production of cells. In addition to reducing the time and effort of researchers, an automated culture system improves the reproducibility of cell cultures. In the present study, we newly designed a fully automated cell culture system for human iPS maintenance. Using an automated culture system, hiPS cells maintained their undifferentiated state for 60 days. Automatically prepared hiPS cells had a potency of differentiation into three germ layer cells including dopaminergic neurons and pancreatic cells.
Global analysis of the effect of local climate on the hatchling output of leatherback turtles
Authors: Santidrián Tomillo Pilar , Saba Vincent S. , Lombard Claudia D. , Valiulis Jennifer M. , Robinson Nathan J. , Paladino Frank V. , Spotila James R. , Fernández Carlos , Rivas Marga L. , Tucek Jenny , Nel Ronel , Oro Daniel 
Published: November 2015

AbstractThe most recent climate change projections show a global increase in temperatures along with precipitation changes throughout the 21st century. However, regional projections do not always match global projections and species with global distributions may exhibit varying regional susceptibility to climate change. Here we show the effect of local climatic conditions on the hatchling output of leatherback turtles (Dermochelys coriacea) at four nesting sites encompassing the Pacific, Atlantic and Indian Oceans. We found a heterogeneous effect of climate. Hatchling output increased with long-term precipitation in areas with dry climatic conditions (Playa Grande, Pacific Ocean and Sandy Point, Caribbean Sea), but the effect varied in areas where precipitation was high (Pacuare, Caribbean Sea) and was not detected at the temperate site (Maputaland, Indian Ocean). High air temperature reduced hatchling output only at the area experiencing seasonal droughts (Playa Grande). Climatic projections showed a drastic increase in air temperature and a mild decrease in precipitation at all sites by 2100. The most unfavorable conditions were projected for Sandy Point where hatching success has already declined over time along with precipitation levels. The heterogeneous effect of climate may lead to local extinctions of leatherback turtles in some areas but survival in others by 2100.
Spatiotemporal quantification of subcellular ATP levels in a single HeLa cell during changes in morphology
Authors: Suzuki Rika , Hotta Kohji , Oka Kotaro 
Published: November 2015

AbstractThe quantitative relationship between change in cell shape and ATP consumption is an unsolved problem in cell biology. In this study, a simultaneous imaging and image processing analysis allowed us to observe and quantify these relationships under physiological conditions, for the first time. We focused on two marginal regions of cells: the microtubule-rich ‘lamella’ and the actin-rich ‘peripheral structure’. Simultaneous imaging and correlation analysis revealed that microtubule dynamics cause lamellar shape change accompanying an increase in ATP level. Also, image processing and spatiotemporal quantification enabled to visualize a chronological change of the relationships between the protrusion length and ATP levels and it suggested they are influencing each other. Furthermore, inhibition of microtubule dynamics diminished motility in the peripheral structure and the range of fluctuation of ATP level in the lamella. This work clearly demonstrates that cellular motility and morphology are regulated by ATP-related cooperative function between microtubule and actin dynamics.
History and origin of the HIV-1 subtype C epidemic in South Africa and the greater southern African region
Authors: Wilkinson Eduan , Engelbrecht Susan , de Oliveira Tulio 
Published: November 2015

AbstractHIV has spread at an alarming rate in South Africa, making it the country with the highest number of HIV infections. Several studies have investigated the histories of HIV-1 subtype C epidemics but none have done so in the context of social and political transformation in southern Africa. There is a need to understand how these processes affects epidemics, as socio-political transformation is a common and on-going process in Africa. Here, we genotyped strains from the start of the epidemic and applied phylodynamic techniques to determine the history of the southern Africa and South African epidemic from longitudinal sampled data. The southern African epidemic’s estimated dates of origin was placed around 1960 (95% HPD 1956–64), while dynamic reconstruction revealed strong growth during the 1970s and 80s. The South African epidemic has a similar origin, caused by multiple introductions from neighbouring countries and grew exponentially during the 1980s and 90s, coinciding with socio-political changes in South Africa. These findings provide an indication as to when the epidemic started and how it has grown, while the inclusion of sequence data from the start of the epidemic provided better estimates. The epidemic have stabilized in recent years with the expansion of antiretroviral therapy.
Deciphering H3K4me3 broad domains associated with gene-regulatory networks and conserved epigenomic landscapes in the human brain
Authors: Dincer A , Gavin D P , Xu K , Zhang B , Dudley J T , Schadt E E , Akbarian S 
Published: November 2015

AbstractRegulators of the histone H3-trimethyl lysine-4 (H3K4me3) mark are significantly associated with the genetic risk architecture of common neurodevelopmental disease, including schizophrenia and autism. Typical H3K4me3 is primarily localized in the form of sharp peaks, extending in neuronal chromatin on average only across 500–1500 base pairs mostly in close proximity to annotated transcription start sites. Here, through integrative computational analysis of epigenomic and transcriptomic data based on next-generation sequencing, we investigated H3K4me3 landscapes of sorted neuronal and non-neuronal nuclei in human postmortem, non-human primate and mouse prefrontal cortex (PFC), and blood. To explore whether H3K4me3 peak signals could also extend across much broader domains, we examined broadest domain cell-type-specific H3K4me3 peaks in an unbiased manner with an innovative approach on 41+12 ChIP-seq and RNA-seq data sets. In PFC neurons, broadest H3K4me3 distribution ranged from 3.9 to 12 kb, with extremely broad peaks (~10 kb or broader) related to synaptic function and GABAergic signaling (DLX1, ELFN1, GAD1, IGSF9B and LINC00966). Broadest neuronal peaks showed distinct motif signatures and were centrally positioned in prefrontal gene-regulatory Bayesian networks and sensitive to defective neurodevelopment. Approximately 120 of the broadest H3K4me3 peaks in human PFC neurons, including many genes related to glutamatergic and dopaminergic signaling, were fully conserved in chimpanzee, macaque and mouse cortical neurons. Exploration of spread and breadth of lysine methylation markings could provide novel insights into epigenetic mechanism involved in neuropsychiatric disease and neuronal genome evolution.
Impulsive alcohol-related risk-behavior and emotional dysregulation among individuals with a serotonin 2B receptor stop codon
Authors: Tikkanen R , Tiihonen J , Rautiainen M R , Paunio T , Bevilacqua L , Panarsky R , Goldman D , Virkkunen M 
Published: November 2015

AbstractA relatively common stop codon (Q20*) was identified in the serotonin 2B receptor gene (HTR2B) in a Finnish founder population in 2010 and it was associated with impulsivity. Here we examine the phenotype of HTR2B Q20* carriers in a setting comprising 14 heterozygous HTR2B Q20* carriers and 156 healthy controls without the HTR2B Q20*. The tridimensional personality questionnaire, Brown–Goodwin lifetime aggression scale, the Michigan alcoholism screening test and lifetime drinking history were used to measure personality traits, impulsive and aggressive behavior, both while sober and under the influence of alcohol, and alcohol consumption. Regression analyses showed that among the HTR2B Q20* carriers, temperamental traits resembled a passive-dependent personality profile, and the presence of the HTR2B Q20* predicted impulsive and aggressive behaviors particularly under the influence of alcohol. Results present examples of how one gene may contribute to personality structure and behaviors in a founder population and how personality may translate into behavior.
Improved signaling as a result of randomness in synaptic vesicle release
Authors: Zhang Calvin , Peskin Charles S. 
Published: November 2015

Significance
Noise is not only a source of disturbance, but it also can be beneficial for neuronal information processing. The release of neurotransmitter vesicles in synapses is an unreliable process, especially in the central nervous system. Here we show that the probabilistic nature of neurotransmitter release directly influences the functional role of a synapse, and that a small probability of release per docked vesicle helps reduce the error in the reconstruction of desired signals from the time series of vesicle release events.
Critical role of
Chlamydomonas reinhardtii
ferredoxin-5 in maintaining membrane structure and dark metabolism
Authors: Yang Wenqiang , Wittkopp Tyler M. , Li Xiaobo , Warakanont Jaruswan , Dubini Alexandra , Catalanotti Claudia , Kim Rick G. , Nowack Eva C. M. , Mackinder Luke C. M. , Aksoy Munevver , Page Mark Dudley , D’Adamo Sarah , Saroussi Shai , Heinnickel Mark , Johnson Xenie , Richaud Pierre , Alric Jean , Boehm Marko , Jonikas Martin C. , Benning Christoph , Merchant Sabeeha S. , Posewitz Matthew C. , Grossman Arthur R. 
Published: November 2015

Significance
Our results suggest that particular ferredoxins in photosynthetic organisms are tailored to serve as electron carriers that sustain day-time and night-time metabolism and that the chloroplast-localized ferredoxin-5 (FDX5) appears to function in the desaturation of fatty acids required for maintaining the correct ratio of the dominant lipids in the thylakoid membranes and the integration of chloroplast and mitochondrial metabolism, which is absolutely required for growth in the dark. The most important messages from this work are that redox components associated with critical activities in photosynthetic organisms must be tuned to the redox conditions of the cells and the overall carbon budget of photosynthetic cells requires an understanding of metabolic features that accompany the movement of cells between light and dark conditions.
An RNA motif advances transcription by preventing Rho-dependent termination
Authors: Sevostyanova Anastasia , Groisman Eduardo A. 
Published: November 2015

Significance
Transcription factors typically bind to more sites than are functionally affected upon transcription factor inactivation. What, then, determines whether transcription factor binding impacts gene expression? Here we address this question by investigating Rho, the essential transcription termination factor that associates with most newly transcribed RNAs in bacteria, but promotes transcription termination only in a fraction of these transcripts. We uncover a novel RNA element that sequesters Rho in an inactive complex, thereby advancing transcription without affecting Rho binding. Our results indicate that the site of action of transcription factors is defined not only by sequences that mediate their recruitment but also by sequences that antagonize their activity.
Uniportal Videothoracoscopic Surgery: Our Indications and Limits
Authors: Gonfiotti Alessandro , Jaus Massimo Osvaldo , Barale Daniel , Viggiano Domenico , Battisti Natalia , Macchiarini Paolo 
Published: November 2015

Objective We present our experience with uniportal videothoracoscopic surgery (VATS-U), examining its indications, limits, and results. Methods Since January 2009, 66 patients underwent VATS-U for the following indications: pneumothorax (n = 25), lung nodule (n = 15; n = 10 with preoperative radiolocalization), wedge biopsy (n = 15), hyperhidrosis (n = 10), and chest wall schwannoma (n = 1). The conversion rate to conventional video-assisted thoracic surgery (VATS), postoperative pain, complications, residual paraesthesia, and hospitalization were analyzed. Operative time, postoperative pain, and paraesthesia were retrospectively compared with a cohort of 172 cases of conventional multiportal VATS, performed in the same period. Results Conversion to traditional VATS was necessary in two cases (pulmonary nodule, n = 1; pneumothorax, n = 1). The mean pain score was 0.8, the mean operation time was 42 minutes, and 10 patients had postoperative paraesthesia that lasted a mean of 7 days. No postoperative complications were reported, and the mean postoperative hospital stay was 3 days (range, 1–6 days). The comparison between the VATS-U and the standard multiportal VATS group showed in the VATS-U group a lower but not statistically significant pain score and paraesthesia as well as a lower and statistically significant operative time. Conclusions Uniportal videothoracoscopic surgery has a wide range of indications: lung apex resections and pleurodesis for spontaneous pneumothorax treatment; pulmonary nodule assessment with or without preoperative localization; lung biopsy for interstitial diseases; unilateral or bilateral sympathectomy to treat hyperhidrosis; benign chest wall tumor evaluation. The limits of this technique are linked to pleural adhesions or lung nodules in difficult positions. In our experience, VATS-U results in minimal postoperative pain, allowing for fast functional recovery and a consequent short hospital stay; thus, we suggest that VATS-U is a valid alternative to traditional multiportal VATS for indications beyond cosmetic benefits. Prospective randomized trials are necessary to validate the advantages of uniportal VATS.