bluuebunny/crossref_metadata_2025_split huggingface dataset:
Seroconversion to Lutzomyia intermedia LinB-13 as a biomarker for developing cutaneous leishmaniasis
Authors: Carvalho Augusto M. , Fukutani Kiyoshi F. , Sharma Rohit , Curvelo Rebecca P. , Miranda José Carlos , Barral Aldina , Carvalho Edgar M. , Valenzuela Jesus G. , Oliveira Fabiano , de Oliveira Camila I. 
Published: June 2017

AbstractSand flies inject saliva while feeding in the vertebrate host and anti-saliva antibodies can be used as biomarkers of exposure to Leishmania vectors. We expressed recombinant salivary proteins from Lutzomyia intermedia, a vector of Leishmania braziliensis, and evaluated the seroreactivity in exposed individuals in search for exposure markers. We found a strong correlation among positive serology to recombinant proteins LinB-13, 26, 15, 21 and to salivary proteins: rLinB-13 was the top performing molecule; IgG4 was the most predominant antibody subclass and antibodies to rLinB-13 did not cross react with Lu. longipalpis salivary proteins. By evaluating a cohort of contacts of CL patients, we confirmed that rLinB-13, an antigen 5-related protein, is a marker of exposure to Lu. intermedia with high degree of accuracy. In a 5-year follow up, we determined that individuals who developed CL presented higher anti-rLinB13 IgG responses, before the appearance of clinical symptoms. They also presented a lower frequency of cellular responses to the parasite (DTH). Our results show that seroconversion to a salivary molecule, rLinB-13, is a marker of risk for CL development caused by Leishmania braziliensis. This highlight the possibility of developing tools based on vector molecules to manage the disease in endemic areas.
Constructing a visible-light-driven photocatalytic membrane by g-C3N4 quantum dots and TiO2 nanotube array for enhanced water treatment
Authors: Zhang Qi , Quan Xie , Wang Hua , Chen Shuo , Su Yan , Li Zhangliang 
Published: June 2017

AbstractPhotocatalytic membranes that driven by visible light are highly desired for water treatment. Here g-C3N4 quantum dots (QDs) assembled into TiO2 nanotube array (TNA) membranes were fabricated for the first time as a visible-light-driven g-C3N4/TNA membrane. Benefiting from the synergistic effect of membrane filtration and photocatalysis, more than 60% of rhodamine B could be removed from water under visible light irradiation. Meanwhile, the g-C3N4/TNA membrane presented an enhanced anti-fouling ability during filtering water containing Escherichia coli under visible light irradiation, and a permeate flux of 2 times higher than that of filtration alone was obtained by integrated process. This study offers a promising strategy for the potential application of the visible-light-driven membranes in water treatment.
A Metric on the Space of kth-order reduced Phylogenetic Networks
Authors: Wang Juan , Guo Maozu 
Published: June 2017

AbstractPhylogenetic networks can be used to describe the evolutionary history of species which experience a certain number of reticulate events, and represent conflicts in phylogenetic trees that may be due to inadequacies of the evolutionary model used in the construction of the trees. Measuring the dissimilarity between two phylogenetic networks is at the heart of our understanding of the evolutionary history of species. This paper proposes a new metric, i.e. kth-distance, for the space of kth-order reduced phylogenetic networks that can be calculated in polynomial time in the size of the compared networks.
Altered humoral immunity to mycobacterial antigens in Japanese patients affected by inflammatory demyelinating diseases of the central nervous system
Authors: Cossu Davide , Yokoyama Kazumasa , Tomizawa Yuji , Momotani Eiichi , Hattori Nobutaka 
Published: June 2017

AbstractMycobacterium avium subsp. paratuberculosis (MAP) and Mycobacterium bovis (BCG) have been associated to several human autoimmune diseases such as multiple sclerosis (MS), but there are conflicting evidence on the issue. The objective of this study is to evaluate their role in Japanese patients affected by inflammatory demyelinating disorders of the central nervous system (IDDs). A total of 97 IDDs subjects including 51 MS and 46 neuromyelitis optica spectrum disorder (NMOSD) patients, and 34 healthy controls (HCs) were tested for the detection of IgG, IgM and IgA against mycobacterial antigens by indirect ELISA. The levels of anti-MAP IgG were higher in MS patients compared to NMOSD patients (AUC = 0.59, p = 0.02) and HCs (AUC = 0.67, p = 0.01), and the anti-MAP antibodies were more prevalent in MS patients treated with interferon-beta (OR = 11.9; p = 0.004). Anti-BCG IgG antibodies were detected in 8% of MS, 32% of NMOSD and 18% of HCs, the difference between MS and NMOSD groups was statistically significant (AUC = 0.66, p = 0.005). Competition experiments showed that nonspecific IgM were elicited by common mycobacterial antigens. Our study provided further evidence for a possible association between MAP and MS, while BCG vaccination seemed to be inversely related to the risk of developing MS.
Look me in the eyes: constraining gaze in the eye-region provokes abnormally high subcortical activation in autism
Authors: Hadjikhani Nouchine , Åsberg Johnels Jakob , Zürcher Nicole R. , Lassalle Amandine , Guillon Quentin , Hippolyte Loyse , Billstedt Eva , Ward Noreen , Lemonnier Eric , Gillberg Christopher 
Published: June 2017

AbstractIndividuals with Autism Spectrum Disorder (ASD) seem to have difficulties looking others in the eyes, but the substrate for this behavior is not well understood. The subcortical pathway, which consists of superior colliculus, pulvinar nucleus of the thalamus, and amygdala, enables rapid and automatic face processing. A specific component of this pathway – i.e., the amygdala – has been shown to be abnormally activated in paradigms where individuals had to specifically attend to the eye-region; however, a direct examination of the effect of manipulating the gaze to the eye-regions on all the components of the subcortical system altogether has never been performed. The subcortical system is particularly important as it shapes the functional specialization of the face-processing cortex during development. Using functional MRI, we investigated the effect of constraining gaze in the eye-region during dynamic emotional face perception in groups of participants with ASD and typical controls. We computed differences in activation in the subcortical face processing system (superior colliculus, pulvinar nucleus of the thalamus and amygdala) for the same stimuli seen freely or with the gaze constrained in the eye-region. Our results show that when constrained to look in the eyes, individuals with ASD show abnormally high activation in the subcortical system, which may be at the basis of their eye avoidance in daily life.
Bloch oscillations sustained by nonlinearity
Authors: Driben R. , Konotop V. V. , Meier T. , Yulin A. V. 
Published: June 2017

AbstractWe demonstrate that nonlinearity may play a constructive role in supporting Bloch oscillations in a model which is discrete, in one dimension and continuous in the orthogonal one. The model can be experimentally realized in several fields of physics such as optics and Bose-Einstein condensates. We demonstrate that designing an optimal relation between the nonlinearity and the linear gradient strength provides extremely long-lived Bloch oscillations with little degradation. Such robust oscillations can be observed for a broad range of parameters and even for moderate nonlinearities and large enough values of linear potential. We also present an approximate analytical description of the wave packet’s evolution featuring a hybrid Bloch oscillating wave-soliton behavior that excellently corresponds to the direct numerical simulations.
Differential transcript profiling alters regulatory gene expression during the development of Gossypium arboreum, G.stocksii and somatic hybrids
Authors: Ke Liping , Luo Binglun , Zhang Liqing , Zhang Mengna , Yu Xiushuang , Sun Jie , Sun Yuqiang 
Published: June 2017

AbstractPolyploidy or genome doubling (i.e., the presence of two or more diploid parental genome sets within an organism) are very important in higher plants. Of particular interest are the mechanisms in the new microenvironment of the common nucleus, where doubled regulatory networks interact to generate a viable genetic system capable of regulating growth, development and responses to the environment. To determine the effects of whole genome merging and doubling on the global gene expression architecture of a new polyploid, derived from protoplast fusion of the A1A1 genome of Gossypium arboreum and the E1E1 genome of Gossypium stocksii, we monitored gene expression through cDNA-AFLP in the somatic hybrids (G. arboreum + G. stocksii). The genomic expression patterns of the somatic hybrids revealed that changes in expression levels mainly involved regulatory genes (31.8% of the gene expression profiles), and the AA and EE genomes contributed equally to genome-wide expression in the newly formed AAEE genome from additivity and dominance effects. These results provide a novel perspective on polyploid gene regulation and hint at the underlying genetic basis of allopolyploid adaption in the new microenvironmental nucleus.
Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
Authors: Ren Yandong , Zhu Yanan , Wang Qi , Xiang Hui , Wang Boyi 
Published: June 2017

AbstractPterospermum kingtungense C.Y.Wu ex Hsue is a typical tree species living in the relatively adverse limestone habitat. Due to its excellent wood quality and big size, it is an important timber resource which caused its endangered. We firstly provide the data resources by reporting an annotated transcriptome assembly. 203 million unique Illumina RNA-seq reads were produced with totally 50,333 transcripts, among which 48,778 transcripts were annotated. By a global comparison of homology between P. kingtungense and cacao, we identified 9,507 single copy orthologues and 990 P. kingtungense specific genes. GO enrichment analyses indicate that P. kingtungense specific genes are enriched in defense response, implying potential adaptation to limestone environment. As to cell compartment, the genes are enriched in thylakoid component. Consistently, KEGG enrichment indicates that genes are enriched in photosynthesis. In addition, we identified two genes under positive selection in P. kingtungense species. These results suggest that P. kingtungense have strong photosynthetic capacity, which related to vegetation growth. Our work provides the genomic resources of a limestone specific tree with economic importance to local society and suggests possible mechanism on its characteristics on the limestone adaption and excellent wood properties, which will be important for its conservation and sustainable utilization.
Directing solar photons to sustainably meet food, energy, and water needs
Authors: Gençer Emre , Miskin Caleb , Sun Xingshu , Khan M. Ryyan , Bermel Peter , Alam M. Ashraf , Agrawal Rakesh 
Published: June 2017

AbstractAs we approach a “Full Earth” of over ten billion people within the next century, unprecedented demands will be placed on food, energy and water (FEW) supplies. The grand challenge before us is to sustainably meet humanity’s FEW needs using scarcer resources. To overcome this challenge, we propose the utilization of the entire solar spectrum by redirecting solar photons to maximize FEW production from a given land area. We present novel solar spectrum unbundling FEW systems (SUFEWS), which can meet FEW needs locally while reducing the overall environmental impact of meeting these needs. The ability to meet FEW needs locally is critical, as significant population growth is expected in less-developed areas of the world. The proposed system presents a solution to harness the same amount of solar products (crops, electricity, and purified water) that could otherwise require ~60% more land if SUFEWS were not used—a major step for Full Earth preparedness.
Reconfigurable all-dielectric metasurface based on tunable chemical systems in aqueous solution
Authors: Yang Xiaoqing , Zhang Di , Wu Shiyue , Yin Yang , Li Lanshuo , Cao Kaiyuan , Huang Kama 
Published: June 2017

AbstractDynamic control transmission and polarization properties of electromagnetic (EM) wave propagation is investigated using chemical reconfigurable all-dielectric metasurface. The metasurface is composed of cross-shaped periodical teflon tubes and inner filled chemical systems (i.e., mixtures and chemical reaction) in aqueous solution. By tuning the complex permittivity of chemical systems, the reconfigurable metasurface can be easily achieved. The transmission properties of different incident polarized waves (i.e., linear and circular polarization) were simulated and experimentally measured for static ethanol solution as volume ratio changed. Both results indicated this metasurface can serve as either tunable FSS (Frequency Selective Surface) or tunable linear-to-circular/cross Polarization Converter at required frequency range. Based on the reconfigurable laws obtained from static solutions, we developed a dynamic dielectric system and researched a typical chemical reaction with time-varying permittivity filled in the tubes experimentally. It provides new ways for realizing automatic reconfiguration of metasurface by chemical reaction system with given variation laws of permittivity.
Bactericidal metabolites from Phellinus noxius HN-1 against Microcystis aeruginosa
Authors: Jin Pengfei , Wang Haonan , Liu Wenbo , Zhang Shujian , Lin Chunhua , Zheng Fucong , Miao Weiguo 
Published: June 2017

AbstractHarmful algal blooms cause serious problems worldwide due to large quantities of cyanotoxins produced by cyanobacteria in eutrophic water. In this study, a new compound named 2-(3, 4-dihydroxy-2-methoxyphenyl)-1, 3-benzodioxole-5-carbaldehyde (Compound 1), together with one known compound, 3, 4-dihydroxybenzalacetone (DBL), was purified from Phellinus noxius HN-1 (CCTCC M 2016242). Compound 1 and DBL displayed activity against the cyanobacteria Microcystis aeruginosa with a half maximal effective concentration of 21 and 5 μg/mL, respectively. Scanning electron and transmission electron microscopic observations showed that the compounds caused serious damage and significant lysis to M. aeruginosa cells. qRT-PCR assay indicated that compound 1 and DBL exposure up-regulated the expression of gene mcyB and down-regulated the expression of genes ftsZ, psbA1, and glmS in M. aeruginosa. This study provides the first evidence of bactericidal activity of a new compound and DBL. In summary, our results suggest that compound 1 and DBL might be developed as naturally-based biocontrol agents.
Epe1 contributes to activation of AMPK by promoting phosphorylation of AMPK alpha subunit, Ssp2
Authors: Chen Yongyi , Hu Xiaoyue , Guo Chao , Yu Yao , Lu Hong 
Published: June 2017

AbstractAMP-activated protein kinase (AMPK) is a pivotal cellular energy sensor. It is activated by stresses that cause depletion of energy and initiates adaptive responses by regulating metabolism balance. AMPK forms αβγ heterotrimer. In fission yeast, activation of AMPK mainly depends on the phosphorylation of AMPKα subunit Ssp2 at Thr189 by upstream kinase Ssp1. However, not much is known about the regulation of this process. In this study, we identified Epe1 as a novel positive regulator of AMPK. Epe1, a jmjC-domain-containing protein, is best-known as a negative regulator of heterochromatin spreading. Although the novel role of Epe1 in regulation of AMPK relies on predicted iron- and 2-oxyglutarate-binding residues inside jmjC domain, it seems to be irrelevant to inhibition of heterochromatin spreading. Epe1 is associated with Ssp2 directly and promotes phosphorylation of Ssp2 upon various environmental stresses, including low-glucose, high-sodium, high-pH and oxidative conditions. Similar to Epe1, Jmj1 and Msc1 also contribute to phosphorylation of Ssp2. Deletion of epe1+ impairs downstream events following phosphorylation of Ssp2, including nuclear translocation of Ssp2, sexual differentiation and inhibition of fatty acid synthesis. Our study reveals a novel way in which a jmjC-domain-containing protein regulates adaptive response by directly binding to a principal sensor.
An innovative cell-laden α-TCP/collagen scaffold fabricated using a two-step printing process for potential application in regenerating hard tissues
Authors: Kim Won Jin , Yun Hui-Suk , Kim Geun Hyung 
Published: June 2017

AbstractCell-laden scaffolds are widely investigated in tissue engineering because they can provide homogenous cell distribution after long culture periods, and deposit multiple types of cells into a designed region. However, producing a bioceramic 3D cell-laden scaffold is difficult because of the low processability of cell-loaded bioceramics. Therefore, designing a 3D bioceramic cell-laden scaffold is important for ceramic-based tissue regeneration. Here, we propose a new strategy to fabricate an alpha-tricalcium-phosphate (α-TCP)/collagen cell-laden scaffold, using preosteoblasts (MC3T3-E1), in which the volume fraction of the ceramic exceeded 70% and was fabricated using a two-step printing process. To fabricate a multi-layered cell-laden scaffold, we manipulated processing parameters, such as the diameter of the printing nozzle, pneumatic pressure, and volume fraction of α-TCP, to attain a stable processing region. A cell-laden pure collagen scaffold and an α-TCP/collagen scaffold loaded with cells via a simple dipping method were used as controls. Their pore geometry was similar to that of the experimental scaffold. Physical properties and bioactivities showed that the designed scaffold demonstrated significantly higher cellular activities, including metabolic activity and mineralization, compared with those of the controls. Our results indicate that the proposed cell-laden ceramic scaffold can potentially be used for bone regeneration.
Multisensory Perception of Contradictory Information in an Environment of Varying Reliability: Evidence for Conscious Perception and Optimal Causal Inference
Authors: Mahani Mohammad-Ali Nikouei , Sheybani Saber , Bausenhart Karin Maria , Ulrich Rolf , Ahmadabadi Majid Nili 
Published: June 2017

AbstractTwo psychophysical experiments examined multisensory integration of visual-auditory (Experiment 1) and visual-tactile-auditory (Experiment 2) signals. Participants judged the location of these multimodal signals relative to a standard presented at the median plane of the body. A cue conflict was induced by presenting the visual signals with a constant spatial discrepancy to the other modalities. Extending previous studies, the reliability of certain modalities (visual in Experiment 1, visual and tactile in Experiment 2) was varied from trial to trial by presenting signals with either strong or weak location information (e.g., a relatively dense or dispersed dot cloud as visual stimulus). We investigated how participants would adapt to the cue conflict from the contradictory information under these varying reliability conditions and whether participants had insight to their performance. During the course of both experiments, participants switched from an integration strategy to a selection strategy in Experiment 1 and to a calibration strategy in Experiment 2. Simulations of various multisensory perception strategies proposed that optimal causal inference in a varying reliability environment not only depends on the amount of multimodal discrepancy, but also on the relative reliability of stimuli across the reliability conditions.
Association of Interleukin-12A rs568408 with Susceptibility to Asthma in Taiwan
Authors: Shen Te-Chun , Tsai Chia-Wen , Chang Wen-Shin , Wang Shengyu , Chao Che-Yi , Hsiao Chieh-Lun , Chen Wei-Chun , Hsia Te-Chun , Bau Da-Tian 
Published: June 2017

AbstractAsthma is an inflammatory disease and interleukin 12 (IL-12) may play a regulatory role in allergen-induced inflammation. The aim of this study was to investigate the association of polymorphisms in IL-12A/IL-12B with asthma. The asthma group included 198 adult patients and the control group included 453 individuals without asthma that were frequency-matched by gender and age. The distribution of genotypic and allelic frequencies of IL-12A rs568408 demonstrated significant differences between case and control groups. Specifically, the percentages of AA genotype of IL-12A rs568408 was significantly higher among asthmatic patients in Taiwan than healthy controls, compared to GG genotype. No significant difference was observed among the IL-12A rs2243115 and IL-12B rs3212227 genotypes between case and control groups. In addition, the A allele at IL-12A rs568408 was associated with more severe symptoms (P = 0.0085) among asthmatic patients. These results suggest that IL-12A rs568408 may contribute to the etiology and symptoms severity of asthma, indicating its usefulness as a predictive and diagnostic biomarker of asthma.
Improving Spatiotemporal Breast Cancer Assessment and Prediction in Hangzhou City, China
Authors: Lou Zhaohan , Fei Xufeng , Christakos George , Yan Jianbo , Wu Jiaping 
Published: June 2017

AbstractBreast cancer (BC) is the main cause of death of female cancer patients in China. Mainstream mapping techniques, like spatiotemporal ordinary kriging (STOK), generate disease incidence maps that improve our understanding of disease distribution. Yet, the implementation of these techniques experiences substantive and technical complications (due mainly to the different characteristics of space and time). A new spatiotemporal projection (STP) technique that is free of the above complications was implemented to model the space-time distribution of BC incidence in Hangzhou city and to estimate incidence values at locations-times for which no BC data exist. For comparison, both the STP and the STOK techniques were used to generate BC incidence maps in Hangzhou. STP performed considerably better than STOK in terms of generating more accurate incidence maps showing a closer similarity to the observed incidence distribution, and providing an improved assessment of the space-time BC correlation structure. In sum, the inter-connections between space, time, BC incidence and spread velocity established by STP allow a more realistic representation of the actual incidence distribution, and generate incidence maps that are more accurate and more informative, at a lower computational cost and involving fewer approximations than the incidence maps produced by mainstream space-time techniques.