bluuebunny/crossref_metadata_2025_split huggingface dataset:
Eastern in the West, Western in the East: Deliberate and Ambivalent Facets of the Identity of Early Republican Turkey Abroad
Authors: Zelef M. Haluk 
Published: February 2016

AbstractThis paper represents an attempt to reflect on the Turkish identity in the formation period of the Republic, from its constitution in 1923 until 1939. The discussion is focused around two buildings that were constructed in 1939, both of which were built abroad to represent the new state; the Embassy of Turkey in Tehran and the Turkish pavilion at the New York World’s Fair. These buildings were both featured in the same issue of the architectural magazine Mimar, and offer a fruitful starting point for delving into historical and theoretical issues in identity discourse. That said, the paper goes beyond merely analyzing the different formal vocabularies and personalities of the different architects and patrons involved in commissioning these structures. Rather than addressing only the different cultural and architectural responses to the contemporary national identity debate, the paper will also consider the question of whether the host countries and the addressees of these rather symbolic buildings also had a role in their design and evaluation stages. In other words, the study aims to understand how representation in a location in the “West” or in the “East” affects the identity of a nation characterized by its duality of “West” and “East.”
Insights into the metabolism of the high temperature microbial community of Tramway Ridge, Mount Erebus, Antarctica
Authors: Vickers Chelsea J. , Herbold Craig W. , Cary S. Craig , Mcdonald Ian R. 
Published: February 2016

AbstractMount Erebus is the most active volcano on the Antarctic continent, and it has the most geographically and physically isolated geothermal soil on Earth. Preliminary genetic analysis of the microbial community present in the 65°C subsurface soil of Tramway Ridge, on Mount Erebus, revealed a unique high temperature ecosystem, with the dominant members possessing little genetic similarity to known bacteria. This study investigated the metabolism and physiology of this intriguing ecosystem using physical-chemical soil surveying, community-based phenotypic arrays, nutritional enrichment experiments and pyrosequencing. Results have provided new insights into the metabolic requirements and putative roles of specific organisms, as well as the significance of specific carbon and nitrogen sources. In enrichment experiments bicarbonate slowed down an otherwise dramatic shift in community structure. This suggests that bicarbonate maintains the native communityin vitroby supplying an essential inorganic compound that is utilized for slow, autotrophic growth. This approach shows potential as a model for future investigations of cultivation resistant thermophilic communities.
Deciphering the origin of giant magnetic anisotropy and fast quantum tunnelling in Rhenium(IV) single-molecule magnets
Authors: Singh Saurabh Kumar , Rajaraman Gopalan 
Published: February 2016

AbstractSingle-molecule magnets represent a promising route to achieve potential applications such as high-density information storage and spintronics devices. Among others, 4d/5d elements such as Re(IV) ion are found to exhibit very large magnetic anisotropy, and inclusion of this ion-aggregated clusters yields several attractive molecular magnets. Here, using ab intio calculations, we unravel the source of giant magnetic anisotropy associated with the Re(IV) ions by studying a series of mononuclear Re(IV) six coordinate complexes. The low-lying doublet states are found to be responsible for large magnetic anisotropy and the sign of the axial zero-field splitting parameter (D) can be categorically predicted based on the position of the ligand coordination. Large transverse anisotropy along with large hyperfine interactions opens up multiple relaxation channels leading to a fast quantum tunnelling of the magnetization (QTM) process. Enhancing the Re-ligand covalency is found to significantly quench the QTM process.
A single generation of domestication heritably alters the expression of hundreds of genes
Authors: Christie Mark R. , Marine Melanie L. , Fox Samuel E. , French Rod A. , Blouin Michael S. 
Published: February 2016

AbstractThe genetic underpinnings associated with the earliest stages of plant and animal domestication have remained elusive. Because a genome-wide response to selection can take many generations, the earliest detectable changes associated with domestication may first manifest as heritable changes to global patterns of gene expression. Here, to test this hypothesis, we measured differential gene expression in the offspring of wild and first-generation hatchery steelhead trout (Oncorhynchus mykiss) reared in a common environment. Remarkably, we find that there were 723 genes differentially expressed between the two groups of offspring. Reciprocal crosses reveal that the differentially expressed genes could not be explained by maternal effects or by chance differences in the background levels of gene expression among unrelated families. Gene-enrichment analyses reveal that adaptation to the novel hatchery environment involved responses in wound healing, immunity and metabolism. These findings suggest that the earliest stages of domestication may involve adaptation to highly crowded conditions.
Endocytic recycling protein EHD1 regulates primary cilia morphogenesis and SHH signaling during neural tube development
Authors: Bhattacharyya Sohinee , Rainey Mark A , Arya Priyanka , Mohapatra Bhopal C. , Mushtaq Insha , Dutta Samikshan , George Manju , Storck Matthew D. , McComb Rodney D. , Muirhead David , Todd Gordon L. , Gould Karen , Datta Kaustubh , Waes Janee Gelineau-van , Band Vimla , Band Hamid 
Published: February 2016

AbstractMembers of the four-member C-terminal EPS15-Homology Domain-containing (EHD) protein family play crucial roles in endocytic recycling of cell surface receptors from endosomes to the plasma membrane. In this study, we show that Ehd1 gene knockout in mice on a predominantly B6 background is embryonic lethal. Ehd1-null embryos die at mid-gestation with a failure to complete key developmental processes including neural tube closure, axial turning and patterning of the neural tube. We found that Ehd1-null embryos display short and stubby cilia on the developing neuroepithelium at embryonic day 9.5 (E9.5). Loss of EHD1 also deregulates the ciliary SHH signaling with Ehd1-null embryos displaying features indicative of increased SHH signaling, including a significant downregulation in the formation of the GLI3 repressor and increase in the ventral neuronal markers specified by SHH. Using Ehd1-null MEFS we found that EHD1 protein co-localizes with the SHH receptor Smoothened in the primary cilia upon ligand stimulation. Under the same conditions, EHD1 was shown to co-traffic with Smoothened into the developing primary cilia and we identify EHD1 as a direct binding partner of Smoothened. Overall, our studies identify the endocytic recycling regulator EHD1 as a novel regulator of the primary cilium-associated trafficking of Smoothened and Hedgehog signaling.
The TRPM1 channel in ON-bipolar cells is gated by both the α and the βγ subunits of the G-protein Go
Authors: Xu Ying , Orlandi Cesare , Cao Yan , Yang Shengyan , Choi Chan-Il , Pagadala Vijayakanth , Birnbaumer Lutz , Martemyanov Kirill A. , Vardi Noga 
Published: February 2016

AbstractTransmission from photoreceptors to ON bipolar cells in mammalian retina is mediated by a sign-inverting cascade. Upon binding glutamate, the metabotropic glutamate receptor mGluR6 activates the heterotrimeric G-protein Gαoβ3γ13 and this leads to closure of the TRPM1 channel (melastatin). TRPM1 is thought to be constitutively open, but the mechanism that leads to its closure is unclear. We investigated this question in mouse rod bipolar cells by dialyzing reagents that modify the activity of either Gαo or Gβγ and then observing their effects on the basal holding current. After opening the TRPM1 channels with light, a constitutively active mutant of Gαo closed the channel, but wild-type Gαo did not. After closing the channels by dark adaptation, phosducin or inactive Gαo (both sequester Gβγ) opened the channel while the active mutant of Gαo did not. Co-immunoprecipitation showed that TRPM1 interacts with Gβ3 and with the active and inactive forms of Gαo. Furthermore, bioluminescent energy transfer assays indicated that while Gαo interacts with both the N- and the C- termini of TRPM1, Gβγ interacts only with the N-terminus. Our physiological and biochemical results suggest that both Gαo and Gβγ bind TRPM1 channels and cooperate to close them.
Extraembryonic but not embryonic SUMO-specific protease 2 is required for heart development
Authors: Maruyama Eri O. , Lin Heng , Chiu Shang-Yi , Yu H.-M. Ivy , Porter George A. , Hsu Wei 
Published: February 2016

AbstractSUMO-specific protease 2 (SENP2) activities to remove SUMO from its substrates is essential for development of trophoblast stem cells, niches and lineages. Global deletion of SENP2 leads to midgestation lethality, and causes severe defects in the placenta which is accompanied by embryonic brain and heart abnormalities. Because of the placental deficiencies, the role of SENP2 in development of the embryonic tissues has not been properly determined. The brain and heart abnormalities may be secondary to placental insufficiency. Here we have created a new mouse strain permitting conditional inactivation of SENP2. Mice homozygous for germline deletion of the conditional allele exhibit trophoblast defects and embryonic abnormalities resembling the global SENP2 knockout. However, tissue-specific disruptions of SENP2 demonstrate its dispensable role in embryogenesis. Placental expression of SENP2 is necessary and sufficient for embryonic heart and brain development. Using a protease deficient model, we further demonstrate the requirement of SENP2-dependent SUMO modification in development of all major trophoblast lineages. SENP2 regulates sumoylation of Mdm2 which controls p53 activities critical for G-S transition of mitotic division and endoreduplication in trophoblast proliferation and differentiation, respectively. The differentiation of trophoblasts is also dependent on SENP2-mediated activation of p57Kip2, a CDK-specific inhibitor required for endoreduplication.
Laser capture microdissection of intestinal tissue from sea bass larvae using an optimized RNA integrity assay and validated reference genes
Authors: Schaeck M. , De Spiegelaere W. , De Craene J. , Van den Broeck W. , De Spiegeleer B. , Burvenich C. , Haesebrouck F. , Decostere A. 
Published: February 2016

AbstractThe increasing demand for a sustainable larviculture has promoted research regarding environmental parameters, diseases and nutrition, intersecting at the mucosal surface of the gastrointestinal tract of fish larvae. The combination of laser capture microdissection (LCM) and gene expression experiments allows cell specific expression profiling. This study aimed at optimizing an LCM protocol for intestinal tissue of sea bass larvae. Furthermore, a 3′/5′ integrity assay was developed for LCM samples of fish tissue, comprising low RNA concentrations. Furthermore, reliable reference genes for performing qPCR in larval sea bass gene expression studies were identified, as data normalization is critical in gene expression experiments using RT-qPCR. We demonstrate that a careful optimization of the LCM procedure allows recovery of high quality mRNA from defined cell populations in complex intestinal tissues. According to the geNorm and Normfinder algorithms, ef1a, rpl13a, rps18 and faua were the most stable genes to be implemented as reference genes for an appropriate normalization of intestinal tissue from sea bass across a range of experimental settings. The methodology developed here, offers a rapid and valuable approach to characterize cells/tissues in the intestinal tissue of fish larvae and their changes following pathogen exposure, nutritional/environmental changes, probiotic supplementation or a combination thereof.
Gateable Skyrmion Transport via Field-induced Potential Barrier Modulation
Authors: Fook Hiu Tung , Gan Wei Liang , Lew Wen Siang 
Published: February 2016

AbstractWe report on the influence of pinning potentials on current-driven skyrmion dynamics and demonstrate that skyrmions can be gated via either magnetic or electric fields. When encountering pinning potentials, skyrmions are well known to simply skirt around them. However, we show that skyrmions can be depinned much more easily when their driving force is oriented against the pinning site rather that the intuitive option of being oriented away. This observation can be exploited together with the normally undesirable Magnus force for the creation of a skyrmion diode. The phenomenon is explained by the increased skyrmion compression resulting from the spin transfer torque opposing the repulsive potential. The smaller skyrmion size then experiences a reduced pinning potential. For practical low-power device applications, we show that the same skyrmion compression can be recreated by applying either a magnetic or electric field. Our analysis provides an insight on the skyrmion dynamics and manipulation that is critical for the realization of skyrmion-based transistors and low-power memory.
External characteristic determination of eggs and cracked eggs identification using spectral signature
Authors: Xie Chuanqi , He Yong 
Published: February 2016

AbstractThis study was carried out to use hyperspectral imaging technique for determining color (L*, a* and b*) and eggshell strength and identifying cracked chicken eggs. Partial least squares (PLS) models based on full and selected wavelengths suggested by regression coefficient (RC) method were established to predict the four parameters, respectively. Partial least squares-discriminant analysis (PLS-DA) and RC-partial least squares-discriminant analysis (RC-PLS-DA) models were applied to identify cracked eggs. PLS models performed well with the correlation coefficient (rp) of 0.788 for L*, 0.810 for a*, 0.766 for b* and 0.835 for eggshell strength. RC-PLS models also obtained the rp of 0.771 for L*, 0.806 for a*, 0.767 for b* and 0.841 for eggshell strength. The classification results were 97.06% in PLS-DA model and 88.24% in RC-PLS-DA model. It demonstrated that hyperspectral imaging technique has the potential to be used to detect color and eggshell strength values and identify cracked chicken eggs.
Oxidative stress contributes to the tamoxifen-induced killing of breast cancer cells: implications for tamoxifen therapy and resistance
Authors: Bekele Raie T. , Venkatraman Ganesh , Liu Rong-Zong , Tang Xiaoyun , Mi Si , Benesch Matthew G. K. , Mackey John R. , Godbout Roseline , Curtis Jonathan M. , McMullen Todd P. W. , Brindley David N. 
Published: February 2016

AbstractTamoxifen is the accepted therapy for patients with estrogen receptor-α (ERα)-positive breast cancer. However, clinical resistance to tamoxifen, as demonstrated by recurrence or progression on therapy, is frequent and precedes death from metastases. To improve breast cancer treatment it is vital to understand the mechanisms that result in tamoxifen resistance. This study shows that concentrations of tamoxifen and its metabolites, which accumulate in tumors of patients, killed both ERα-positive and ERα-negative breast cancer cells. This depended on oxidative damage and anti-oxidants rescued the cancer cells from tamoxifen-induced apoptosis. Breast cancer cells responded to tamoxifen-induced oxidation by increasing Nrf2 expression and subsequent activation of the anti-oxidant response element (ARE). This increased the transcription of anti-oxidant genes and multidrug resistance transporters. As a result, breast cancer cells are able to destroy or export toxic oxidation products leading to increased survival from tamoxifen-induced oxidative damage. These responses in cancer cells also occur in breast tumors of tamoxifen-treated mice. Additionally, high levels of expression of Nrf2, ABCC1, ABCC3 plus NAD(P)H dehydrogenase quinone-1 in breast tumors of patients at the time of diagnosis were prognostic of poor survival after tamoxifen therapy. Therefore, overcoming tamoxifen-induced activation of the ARE could increase the efficacy of tamoxifen in treating breast cancer.
The Footprint of the Inter-decadal Pacific Oscillation in Indian Ocean Sea Surface Temperatures
Authors: Dong Lu , Zhou Tianjun , Dai Aiguo , Song Fengfei , Wu Bo , Chen Xiaolong 
Published: February 2016

AbstractSuperimposed on a pronounced warming trend, the Indian Ocean (IO) sea surface temperatures (SSTs) also show considerable decadal variations that can cause regional climate oscillations around the IO. However, the mechanisms of the IO decadal variability remain unclear. Here we perform numerical experiments using a state-of-the-art, fully coupled climate model in which the external forcings with or without the observed SSTs in the tropical eastern Pacific Ocean (TEP) are applied for 1871–2012. Both the observed timing and magnitude of the IO decadal variations are well reproduced in those experiments with the TEP SSTs prescribed to observations. Although the external forcings account for most of the warming trend, the decadal variability in IO SSTs is dominated by internal variability that is induced by the TEP SSTs, especially the Inter-decadal Pacific Oscillation (IPO). The IPO weakens (enhances) the warming of the external forcings by about 50% over the IO during IPO’s cold (warm) phase, which contributes about 10% to the recent global warming hiatus since 1999. The decadal variability in IO SSTs is modulated by the IPO-induced atmospheric adjustment through changing surface heat fluxes, sea surface height and thermocline depth.
Three-dimensional spherical spatial boundary conditions differentially regulate osteogenic differentiation of mesenchymal stromal cells
Authors: Lo Yin-Ping , Liu Yi-Shiuan , Rimando Marilyn G. , Ho Jennifer Hui-Chun , Lin Keng-hui , Lee Oscar K. 
Published: February 2016

AbstractThe spatial boundary condition (SBC) arising from the surrounding microenvironment imposes specific geometry and spatial constraints that affect organogenesis and tissue homeostasis. Mesenchymal stromal cells (MSCs) sensitively respond to alterations of mechanical cues generated from the SBC. However, mechanical cues provided by a three-dimensional (3D) environment are deprived in a reductionist 2D culture system. This study investigates how SBC affects osteogenic differentiation of MSCs using 3D scaffolds with monodispersed pores and homogenous spherical geometries. MSCs cultured under SBCs with diameters of 100 and 150 μm possessed the greatest capability of osteogenic differentiation. This phenomenon was strongly correlated with MSC morphology, organization of actin cytoskeleton and distribution of focal adhesion involving α2 and α5 integrins. Further silencing either α2 or α5 integrin significantly reduced the above mentioned mechanosensitivity, indicating that the α2 and α5 integrins as mechano-sensitive molecules mediate MSCs’ ability to provide enhanced osteogenic differentiation in response to different spherical SBCs. Taken together, the findings provide new insights regarding how MSCs respond to mechanical cues from the surrounding microenvironment in a spherical SBC and such biophysical stimuli should be taken into consideration in tissue engineering and regenerative medicine in conjunction with biochemical cues.
Imbalance of Th17/Tregs in rats with smoke inhalation-induced acute lung injury
Authors: Zhang Fan , Li Mian-yang , Lan Ya-ting , Wang Cheng-bin 
Published: February 2016

AbstractT helper (Th) 17 cells and CD4+ CD25+ regulatory T (Treg) cells are supposed to be critically involved in regulating autoimmune and inflammatory diseases. The aim of this study was to investigate the Th17/Treg pattern in rats with gunpowder smog-induced acute lung injury. Wistar rats were equally randomized to three groups: normal control group, ALI 6 h group (smoke inhalation for 6 h) and ALI 24 h group (smoke inhalation for 24 h). We observed changes in cell counting in bronchoalveolar lavage fluid (BALF), alveolar-capillary membrane permeability and lung tissue pathology. Moreover, rats in ALI 6 h and ALI 24 h group showed increased expression of Th17 cell and related cytokines (IL-17 A, IL-6, TGF-β and IL-23). Meanwhile, Treg prevalence and related cytokines (IL-10, IL-2 and IL-35) were decreased. Consequently, the ratio of Th17/Treg was higher after smoke inhalation. Additionally, Th1 cell decreased while Th2 cell increased at 6 h and 24 h after smoke inhalation. In conclusion, Th17/Treg imbalance exists in rats with smoke inhalation-induced acute lung injury, suggesting its potential role in the pathogenesis of this disease.
Mind-Wandering Tends to Occur under Low Perceptual Demands during Driving
Authors: Lin Chin-Teng , Chuang Chun-Hsiang , Kerick Scott , Mullen Tim , Jung Tzyy-Ping , Ko Li-Wei , Chen Shi-An , King Jung-Tai , McDowell Kaleb 
Published: February 2016

AbstractFluctuations in attention behind the wheel poses a significant risk for driver safety. During transient periods of inattention, drivers may shift their attention towards internally-directed thoughts or feelings at the expense of staying focused on the road. This study examined whether increasing task difficulty by manipulating involved sensory modalities as the driver detected the lane-departure in a simulated driving task would promote a shift of brain activity between different modes of processing, reflected by brain network dynamics on electroencephalographic sources. Results showed that depriving the driver of salient sensory information imposes a relatively more perceptually-demanding task, leading to a stronger activation in the task-positive network. When the vehicle motion feedback is available, the drivers may rely on vehicle motion to perceive the perturbations, which frees attentional capacity and tends to activate the default mode network. Such brain network dynamics could have major implications for understanding fluctuations in driver attention and designing advance driver assistance systems.
Long-term safety and stability of angiogenesis induced by balanced single-vector co-expression of PDGF-BB and VEGF164 in skeletal muscle
Authors: Gianni-Barrera Roberto , Burger Maximilian , Wolff Thomas , Heberer Michael , Schaefer Dirk J. , Gürke Lorenz , Mujagic Edin , Banfi Andrea 
Published: February 2016

AbstractTherapeutic angiogenesis by growth factor delivery is an attractive treatment strategy for ischemic diseases, yet clinical efficacy has been elusive. The angiogenic master regulator VEGF-A can induce aberrant angiogenesis if expressed above a threshold level. Since VEGF remains localized in the matrix around expressing cells, homogeneous dose distribution in target tissues is required, which is challenging. We found that co-expression of the pericyte-recruiting factor PDGF-BB at a fixed ratio with VEGF from a single bicistronic vector ensured normal angiogenesis despite heterogeneous high VEGF levels. Taking advantage of a highly controlled gene delivery platform, based on monoclonal populations of transduced myoblasts, in which every cell stably produces the same amount of each factor, here we rigorously investigated a) the dose-dependent effects and b) the long-term safety and stability of VEGF and PDGF-BB co-expression in skeletal muscle. PDGF-BB co-expression did not affect the normal angiogenesis by low and medium VEGF doses, but specifically prevented vascular tumors by high VEGF, yielding instead normal and mature capillary networks, accompanied by robust arteriole formation. Induced angiogenesis persisted unchanged up to 4 months, while no tumors appeared. Therefore, PDGF-BB co-expression is an attractive strategy to improve safety and efficacy of therapeutic angiogenesis by VEGF gene delivery.