bluuebunny/crossref_metadata_2025_split huggingface dataset:
Darwin’s finches treat their feathers with a natural repellent
Authors: Cimadom Arno , Causton Charlotte , Cha Dong H. , Damiens David , Fessl Birgit , Hood-Nowotny Rebecca , Lincango Piedad , Mieles Alejandro E. , Nemeth Erwin , Semler Elizabeth M. , Teale Stephen A. , Tebbich Sabine 
Published: October 2016

AbstractDarwin’s finches are highly innovative. Recently we recorded for the first time a behavioural innovation in Darwin’s finches outside the foraging context: individuals of four species rubbed leaves of the endemic tree Psidium galapageium on their feathers. We hypothesised that this behaviour serves to repel ectoparasites and tested the repellency of P. galapageium leaf extracts against parasites that negatively affect the fitness of Darwin’s finches, namely mosquitoes and the invasive hematophagous fly Philornis downsi. Mosquitoes transmit pathogens which have recently been introduced by humans and the larvae of the fly suck blood from nestlings and incubating females. Our experimental evidence demonstrates that P. galapageium leaf extracts repel both mosquitoes and adult P. downsi and also inhibit the growth of P. downsi larvae. It is therefore possible that finches use this plant to repel ectopoarasites.
HIV-1 Vpr N-terminal tagging affects alternative splicing of the viral genome
Authors: Baeyens Ann , Naessens Evelien , Van Nuffel Anouk , Weening Karin E. , Reilly Anne-Marie , Claeys Eva , Trypsteen Wim , Vandekerckhove Linos , Eyckerman Sven , Gevaert Kris , Verhasselt Bruno 
Published: October 2016

AbstractTo facilitate studies on Vpr function in replicating HIV-1, we aimed to tag the protein in an infectious virus. First we showed that N-, but not C-terminal HA/FLAG tagging of Vpr protein preserves Vpr cytopathicity. Cloning the tags into proviral DNA however ablated viral production and replication. By construction of additional viral variants we could show this defect was not protein- but RNA-dependent and sequence specific, and characterized by oversplicing of the genomic RNA. Simulation of genomic RNA folding suggested that introduction of the tag sequence induced an alternative folding structure in a region enriched in splice sites and splicing regulatory sequences. In silico predictions identified the HA/His6-Vpr tagging in HIV-1 to affect mRNA folding less than HA/FLAG-Vpr tagging. In vitro infectivity and mRNA splice pattern improved but did not reach wild-type values. Thus, sequence-specific insertions may interfere with mRNA splicing, possibly due to altered RNA folding. Our results point to the complexity of viral RNA genome sequence interactions. This should be taken into consideration when designing viral manipulation strategies, for both research as for biological interventions.
Direct and contactless electrical control of temperature of paper and textile foldable substrates using electrospun metallic-web transparent electrodes
Authors: Busuioc Cristina , Evanghelidis Alexandru , Galatanu Andrei , Enculescu Ionut 
Published: October 2016

AbstractMultiple and complex functionalities are a demand nowadays for almost all materials, including common day-to-day materials such as paper, textiles, wood, etc. In the present report, the surface temperature control of different types of materials, including paper and textiles, was demonstrated by Joule heating of metallic-web transparent electrodes both by direct current and by RF induced eddy currents. Polymeric submicronic fiber webs were prepared by electrospinning, and metal sputtering was subsequently performed to transform them into flexible transparent electrodes. These electrodes were thermally attached to different substrates, including paper, textiles and glass. Using thermochromic inks, we demonstrated a high degree of control of the substrates’ surface temperature by means of the Joule effect. Metallic fiber webs appear to be excellently suited for use as transparent electrodes for controlling the surface temperature of common materials, their highly flexible nature being a major advantage when dealing with rough, bendable substrates. This kind of result could not be achieved on bendable substrates with rough surfaces such as paper or textiles while employing classical transparent electrodes i.e. metal oxides. Moreover, contactless heating with induced currents is a premiere for transparent electrodes and opens up a score of new application fields.
Testing Modeling Assumptions in the West Africa Ebola Outbreak
Authors: Burghardt Keith , Verzijl Christopher , Huang Junming , Ingram Matthew , Song Binyang , Hasne Marie-Pierre 
Published: October 2016

AbstractThe Ebola virus in West Africa has infected almost 30,000 and killed over 11,000 people. Recent models of Ebola Virus Disease (EVD) have often made assumptions about how the disease spreads, such as uniform transmissibility and homogeneous mixing within a population. In this paper, we test whether these assumptions are necessarily correct, and offer simple solutions that may improve disease model accuracy. First, we use data and models of West African migration to show that EVD does not homogeneously mix, but spreads in a predictable manner. Next, we estimate the initial growth rate of EVD within country administrative divisions and find that it significantly decreases with population density. Finally, we test whether EVD strains have uniform transmissibility through a novel statistical test, and find that certain strains appear more often than expected by chance.
IGF-I induces senescence of hepatic stellate cells and limits fibrosis in a p53-dependent manner
Authors: Nishizawa Hitoshi , Iguchi Genzo , Fukuoka Hidenori , Takahashi Michiko , Suda Kentaro , Bando Hironori , Matsumoto Ryusaku , Yoshida Kenichi , Odake Yukiko , Ogawa Wataru , Takahashi Yutaka 
Published: October 2016

AbstractHepatic fibrosis in nonalcoholic steatohepatitis (NASH) and cirrhosis determines patient prognosis; however, effective treatment for fibrosis has not been established. Oxidative stress and inflammation activate hepatic stellate cells (HSCs) and promote fibrosis. In contrast, cellular senescence inhibits HSCs’ activity and limits fibrosis. The aim of this study was to explore the effect of IGF-I on NASH and cirrhotic models and to clarify the underlying mechanisms. We demonstrate that IGF-I significantly ameliorated steatosis, inflammation, and fibrosis in a NASH model, methionine-choline-deficient diet-fed db/db mice and ameliorated fibrosis in cirrhotic model, dimethylnitrosamine-treated mice. As the underlying mechanisms, IGF-I improved oxidative stress and mitochondrial function in the liver. In addition, IGF-I receptor was strongly expressed in HSCs and IGF-I induced cellular senescence in HSCs in vitro and in vivo. Furthermore, in mice lacking the key senescence regulator p53, IGF-I did not induce cellular senescence in HSCs or show any effects on fibrosis. Taken together, these results indicate that IGF-I induces senescence of HSCs, inactivates these cells and limits fibrosis in a p53-dependent manner and that IGF-I may be applied to treat NASH and cirrhosis.
NLRP3 inflammasome mediates contrast media-induced acute kidney injury by regulating cell apoptosis
Authors: Shen Jianxiao , Wang Ling , Jiang Na , Mou Shan , Zhang Minfang , Gu Leyi , Shao Xinghua , Wang Qin , Qi Chaojun , Li Shu , Wang Wanpeng , Che Xiajing , Ni Zhaohui 
Published: October 2016

AbstractIodinated contrast media serves as a direct causative factor of acute kidney injury (AKI) and is involved in the progression of cellular dysfunction and apoptosis. Emerging evidence indicates that NLRP3 inflammasome triggers inflammation, apoptosis and tissue injury during AKI. Nevertheless, the underlying renoprotection mechanism of NLRP3 inflammasome against contrast-induced AKI (CI-AKI) was still uncertain. This study investigated the role of NLRP3 inflammasome in CI-AKI both in vitro and in vivo. In HK-2 cells and unilateral nephrectomy model, NLRP3 and NLRP3 inflammasome member ASC were significantly augmented with the treatment of contrast media. Moreover, genetic disruption of NLRP3 notably reversed contrast-induced expression of apoptosis related proteins and secretion of proinflammatory factors, similarly to the effects of ASC deletion. Consistent with above results, absence of NLRP3 in mice undergoing unilateral nephrectomy also protected against contrast media-induced renal cells phenotypic alteration and cell apoptosis via modulating expression level of apoptotic proteins. Collectively, we demonstrated that NLRP3 inflammasome mediated CI-AKI through modulating the apoptotic pathway, which provided a potential therapeutic target for the treatment of contrast media induced acute kidney injury.
Quantitative analysis of dinoflagellates and diatoms community via Miseq sequencing of actin gene and v9 region of 18S rDNA
Authors: Guo Liliang , Sui Zhenghong , Liu Yuan 
Published: October 2016

AbstractMiseq sequencing and data analysis for the actin gene and v9 region of 18S rDNA of 7 simulated samples consisting of different mixture of dinoflagellates and diatoms were carried out. Not all the species were detectable in all the 18S v9 samples, and sequence percent in all the v9 samples were not consistent with the corresponding cell percent which may suggest that 18S rDNA copy number in different cells of these species differed greatly which result in the large deviation of the amplification. And 18S rDNA amplification of the microalgae was prone to be contaminated by fungus. The amplification of actin gene all was from the dinoflagellates because of its targeted degenerate primers. All the actin sequences of dinoflagellates were detected in the act samples except act4, and sequence percentage of the dinoflagellates in the act samples was not completely consistent with the dinoflagellates percentage of cell samples, but with certain amplification deviations. Indexes of alpha diversity of actin gene sequencing may be better reflection of community structure, and beta diversity analysis could cluster the dinoflagellates samples with identical or similar composition together and was distinguishable with blooming simulating samples at the generic level. Hence, actin gene was more proper than rDNA as the molecular marker for the community analysis of the dinoflagellates.
Infrared vibrational spectroscopy: a rapid and novel diagnostic and monitoring tool for cystinuria
Authors: Oliver Katherine V. , Vilasi Annalisa , Maréchal Amandine , Moochhala Shabbir H. , Unwin Robert J. , Rich Peter R. 
Published: October 2016

AbstractCystinuria is the commonest inherited cause of nephrolithiasis (~1% in adults; ~6% in children) and is the result of impaired cystine reabsorption in the renal proximal tubule. Cystine is poorly soluble in urine with a solubility of ~1 mM and can readily form microcrystals that lead to cystine stone formation, especially at low urine pH. Diagnosis of cystinuria is made typically by ion-exchange chromatography (IEC) detection and quantitation, which is slow, laboursome and costly. More rapid and frequent monitoring of urinary cystine concentration would significantly improve the diagnosis and clinical management of cystinuria. We used attenuated total reflection - Fourier transform infrared spectroscopy (ATR-FTIR) to detect and quantitate insoluble cystine in 22 cystinuric and 5 healthy control urine samples. Creatinine concentration was also determined by ATR-FTIR to adjust for urinary concentration/dilution. Urine was centrifuged, the insoluble fraction re-suspended in 5 μL water and dried on the ATR prism. Cystine was quantitated using its 1296 cm−1 absorption band and levels matched with parallel measurements made using IEC. ATR-FTIR afforded a rapid and inexpensive method of detecting and quantitating insoluble urinary cystine. This proof-of-concept study provides a basis for developing a high-throughput, cost-effective diagnostic method for cystinuria, and for point-of-care clinical monitoring
Cosmic radiation exposure and persistent cognitive dysfunction
Authors: Parihar Vipan K. , Allen Barrett D. , Caressi Chongshan , Kwok Stephanie , Chu Esther , Tran Katherine K. , Chmielewski Nicole N. , Giedzinski Erich , Acharya Munjal M. , Britten Richard A. , Baulch Janet E. , Limoli Charles L. 
Published: October 2016

AbstractThe Mars mission will result in an inevitable exposure to cosmic radiation that has been shown to cause cognitive impairments in rodent models, and possibly in astronauts engaged in deep space travel. Of particular concern is the potential for cosmic radiation exposure to compromise critical decision making during normal operations or under emergency conditions in deep space. Rodents exposed to cosmic radiation exhibit persistent hippocampal and cortical based performance decrements using six independent behavioral tasks administered between separate cohorts 12 and 24 weeks after irradiation. Radiation-induced impairments in spatial, episodic and recognition memory were temporally coincident with deficits in executive function and reduced rates of fear extinction and elevated anxiety. Irradiation caused significant reductions in dendritic complexity, spine density and altered spine morphology along medial prefrontal cortical neurons known to mediate neurotransmission interrogated by our behavioral tasks. Cosmic radiation also disrupted synaptic integrity and increased neuroinflammation that persisted more than 6 months after exposure. Behavioral deficits for individual animals correlated significantly with reduced spine density and increased synaptic puncta, providing quantitative measures of risk for developing cognitive impairment. Our data provide additional evidence that deep space travel poses a real and unique threat to the integrity of neural circuits in the brain.
Contrasting effects of nitrogen and phosphorus addition on soil respiration in an alpine grassland on the Qinghai-Tibetan Plateau
Authors: Ren Fei , Yang Xiaoxia , Zhou Huakun , Zhu Wenyan , Zhang Zhenhua , Chen Litong , Cao Guangmin , He Jin-Sheng 
Published: October 2016

AbstractHigh soil organic carbon content, extensive root biomass, and low nutrient availability make alpine grasslands an important ecosystem for assessing the influence of nutrient enrichment on soil respiration (SR). We conducted a four-year (2009–2012) field experiment in an alpine grassland on the Qinghai-Tibetan Plateau to examine the individual and combined effects of nitrogen (N, 100 kg ha−1year−1) and phosphorus (P, 50 kg ha−1year−1) addition on SR. We found that both N and P addition did not affect the overall growing-season SR but effects varied by year: with N addition SR increased in the first year but decreased during the last two years. However, while P addition did not affect SR during the first two years, SR increased during the last two years. No interactive effects of N and P addition were observed, and both N addition and P addition reduced heterotrophic respiration during the last year of the experiment. N and P addition affected SR via different processes: N mainly affected heterotrophic respiration, whereas P largely influenced autotrophic respiration. Our results highlight the divergent effects of N and P addition on SR and address the important potential of P enrichment for regulating SR and the carbon balance in alpine grasslands.
A transgenic mouse model expressing an ERα folding biosensor reveals the effects of Bisphenol A on estrogen receptor signaling
Authors: Sekar Thillai V. , Foygel Kira , Massoud Tarik F. , Gambhir Sanjiv S. , Paulmurugan Ramasamy 
Published: October 2016

AbstractEstrogen receptor-α (ERα) plays an important role in normal and abnormal physiology of the human reproductive system by interacting with the endogenous ligand estradiol (E2). However, other ligands, either analogous or dissimilar to E2, also bind to ERα. This may create unintentional activation of ER signaling in reproductive tissues that can lead to cancer development. We developed a transgenic mouse model that constitutively expresses a firefly luciferase (FLuc) split reporter complementation biosensor (NFLuc-ER-LBDG521T-CFLuc) to simultaneously evaluate the dynamics and potency of ligands that bind to ERα. We first validated this model using various ER ligands, including Raloxifene, Diethylstilbestrol, E2, and 4-hydroxytamoxifen, by employing FLuc-based optical bioluminescence imaging of living mice. We then used the model to investigate the carcinogenic property of Bisphenol A (BPA), an environmental estrogen, by long-term exposure at full and half environmental doses. We showed significant carcinogenic effects on female animals while revealing activated downstream ER signaling as measured by bioluminescence imaging. BPA induced tumor-like outgrowths in female transgenic mice, histopathologically confirmed to be neoplastic and epithelial in origin. This transgenic mouse model expressing an ERα folding-biosensor is useful in evaluation of estrogenic ligands and their downstream effects, and in studying environmental estrogen induced carcinogenesis in vivo.
Ecosystem responses to warming and watering in typical and desert steppes
Authors: Xu Zhenzhu , Hou Yanhui , Zhang Lihua , Liu Tao , Zhou Guangsheng 
Published: October 2016

AbstractGlobal warming is projected to continue, leading to intense fluctuations in precipitation and heat waves and thereby affecting the productivity and the relevant biological processes of grassland ecosystems. Here, we determined the functional responses to warming and altered precipitation in both typical and desert steppes. The results showed that watering markedly increased the aboveground net primary productivity (ANPP) in a typical steppe during a drier year and in a desert steppe over two years, whereas warming manipulation had no significant effect. The soil microbial biomass carbon (MBC) and the soil respiration (SR) were increased by watering in both steppes, but the SR was significantly decreased by warming in the desert steppe only. The inorganic nitrogen components varied irregularly, with generally lower levels in the desert steppe. The belowground traits of soil total organic carbon (TOC) and the MBC were more closely associated with the ANPP in the desert than in the typical steppes. The results showed that the desert steppe with lower productivity may respond strongly to precipitation changes, particularly with warming, highlighting the positive effect of adding water with warming. Our study implies that the habitat- and year-specific responses to warming and watering should be considered when predicting an ecosystem’s functional responses under climate change scenarios.
Genetic evaluation of the breeding population of a valuable reforestation conifer Platycladus orientalis (Cupressaceae)
Authors: Jin Yuqing , Ma Yongpeng , Wang Shun , Hu Xian-Ge , Huang Li-Sha , Li Yue , Wang Xiao-Ru , Mao Jian-Feng 
Published: October 2016

AbstractPlatycladus orientalis, a widespread conifer with long lifespan and significant adaptability. It is much used in reforestation in north China and commonly planted in central Asia. With the increasing demand for plantation forest in central to north China, breeding programs are progressively established for this species. Efficient use of breeding resources requires good understanding of the genetic value of the founder breeding materials. This study investigated the distribution of genetic variation in 192 elite trees collected for the breeding program for the central range of the species. We developed first set of 27 polymorphic EST-derived SSR loci for the species from transcriptome/genome data. After examination of amplification quality, 10 loci were used to evaluate the genetic variation in the breeding population. We found moderate genetic diversity (averageHe = 0.348) and low population differentiation (Fst = 0.011). Extensive admixture and no significant geographic population structure characterized this set of collections. Our analyses of the diversity and population structure are important steps toward a long-term sustainable deployment of the species and provide valuable genetic information for conservation and breeding applications.
Performance of a Taqman Assay for Improved Detection and Quantification of Human Rhinovirus Viral Load
Authors: Ng Kim Tien , Chook Jack Bee , Oong Xiang Yong , Chan Yoke Fun , Chan Kok Gan , Hanafi Nik Sherina , Pang Yong Kek , Kamarulzaman Adeeba , Tee Kok Keng 
Published: October 2016

AbstractHuman rhinovirus (HRV) is the major aetiology of respiratory tract infections. HRV viral load assays are available but limitations that affect accurate quantification exist. We developed a one-step Taqman assay using oligonucleotides designed based on a comprehensive list of global HRV sequences. The new oligonucleotides targeting the 5′-UTR region showed high PCR efficiency (E = 99.6%, R2 = 0.996), with quantifiable viral load as low as 2 viral copies/μl. Assay evaluation using an External Quality Assessment (EQA) panel yielded a detection rate of 90%. When tested on 315 human enterovirus-positive specimens comprising at least 84 genetically distinct HRV types/serotypes (determined by the VP4/VP2 gene phylogenetic analysis), the assay detected all HRV species and types, as well as other non-polio enteroviruses. A commercial quantification kit, which failed to detect any of the EQA specimens, produced a detection rate of 13.3% (42/315) among the clinical specimens. Using the improved assay, we showed that HRV sheds in the upper respiratory tract for more than a week following acute infection. We also showed that HRV-C had a significantly higher viral load at 2–7 days after the onset of symptoms (p = 0.001). The availability of such assay is important to facilitate disease management, antiviral development, and infection control.
Potential differentiation ability of gingiva originated human mesenchymal stem cell in the presence of tacrolimus
Authors: Ha Dong-Ho , Pathak Shiva , Yong Chul Soon , Kim Jong Oh , Jeong Jee-Heon , Park Jun-Beom 
Published: October 2016

AbstractThe aim of the present study is to evaluate the potential differentiation ability of gingiva originated human mesenchymal stem cell in the presence of tacrolimus. Tacrolimus-loaded poly(lactic-co-glycolic acid) microspheres were prepared using electrospraying technique. In vitro release study of tacrolimus-loaded poly(lactic-co-glycolic acid) microspheres was performed in phosphate-buffered saline (pH 7.4). Gingiva-derived stem cells were isolated and incubated with tacrolimus or tacrolimus-loaded microspheres. Release study of the microspheres revealed prolonged release profiles of tacrolimus without any significant initial burst release. The microsphere itself did not affect the morphology of the mesenchymal stem cells, and cell morphology was retained after incubation with microspheres loaded with tacrolimus at 1 μg/mL to 10 μg/mL. Cultures grown in the presence of microspheres loaded with tacrolimus at 1 μg/mL showed the highest mineralization. Alkaline phosphatase activity increased with an increase in incubation time. The highest expression of pSmad1/5 was achieved in the group receiving tacrolimus 0.1 μg/mL every third day, and the highest expression of osteocalcin was achieved in the group receiving 1 μg/mL every third day. Biodegradable poly(lactic-co-glycolic acid)-based microspheres loaded with tacrolimus promoted mineralization. Microspheres loaded with tacrolimus may be applied for increased osteoblastic differentiation.