bluuebunny/crossref_metadata_2025_split huggingface dataset:
Heterogenous oceanic redox conditions through the Ediacaran-Cambrian boundary limited the metazoan zonation
Authors: Zhang Junpeng , Fan Tailiang , Zhang Yuandong , Lash Gary G. , Li Yifan , Wu Yue 
Published: August 2017

AbstractRecent studies have enhanced our understanding of the linkage of oxygenation and metazoan evolution in Early Cambrian time. However, little of this work has addressed the apparent lag of animal diversification and atmospheric oxygenation during this critical period of Earth history. This study utilizes the geochemical proxy and N isotope record of the Ediacaran–Cambrian boundary preserved in intra-shelf basin, slope, and slope basin deposits of the Yangtze Sea to assess the ocean redox state during the Early Cambrian metazoan radiation. Though ferruginous conditions appear to have prevailed through the water column during this time, episodes of local bottom-water anoxia extending into the photic-zone impacted the slope belt of the basin. Heterogenous oceanic redox conditions are expressed by trace element concentrations and Fe speciation, and spatial variation of N isotopes. We propose that the coupling of ocean chemistry and Early Cambrian animal diversification was not a simple cause-and-effect relationship, but rather a complex interaction. Specifically, it is likely that animal diversification expanded not only temporally but also spatially from the shallow shelf to deep-water environments in tandem with progressive oxygenation of the extensive continental margin.
CD24 induces changes to the surface receptors of B cell microvesicles with variable effects on their RNA and protein cargo
Authors: Ayre D. Craig , Chute Ian C. , Joy Andrew P. , Barnett David A. , Hogan Andrew M. , Grüll Marc P. , Peña-Castillo Lourdes , Lang Andrew S. , Lewis Stephen M. , Christian Sherri L. 
Published: August 2017

AbstractThe CD24 cell surface receptor promotes apoptosis in developing B cells, and we recently found that it induces B cells to release plasma membrane-derived, CD24-bearing microvesicles (MVs). Here we have performed a systematic characterization of B cell MVs released from WEHI-231 B lymphoma cells in response to CD24 stimulation. We found that B cells constitutively release MVs of approximately 120 nm, and that CD24 induces an increase in phosphatidylserine-positive MV release. RNA cargo is predominantly comprised of 5S rRNA, regardless of stimulation; however, CD24 causes a decrease in the incorporation of protein coding transcripts. The MV proteome is enriched with mitochondrial and metabolism-related proteins after CD24 stimulation; however, these changes were variable and could not be fully validated by Western blotting. CD24-bearing MVs carry Siglec-2, CD63, IgM, and, unexpectedly, Ter119, but not Siglec-G or MHC-II despite their presence on the cell surface. CD24 stimulation also induces changes in CD63 and IgM expression on MVs that is not mirrored by the changes in cell surface expression. Overall, the composition of these MVs suggests that they may be involved in releasing mitochondrial components in response to pro-apoptotic stress with changes to the surface receptors potentially altering the cell type(s) that interact with the MVs.
Dual-delivery of FGF-2/CTGF from Silk Fibroin/PLCL-PEO Coaxial Fibers Enhances MSC Proliferation and Fibrogenesis
Authors: Xu Ruodan , Zhao Huiling , Muhammad Hanif , Dong Mingdong , Besenbacher Flemming , Chen Menglin 
Published: August 2017

AbstractThe success of mesenchymal stem cell transplantation is highly dependent on their survival and controlled fate regulation. This study demonstrates that dual-delivery of connective tissue growth factor (CTGF) and fibroblast growth factor 2 (FGF-2) from a core-shell fiber of Silk Fibroin/poly(L-lactic acid-co-ε-caprolactone)-polyethylene oxide (SF/PLCL-PEO) enhanced fibrogenic lineage differentiation of MSCs. The core-shell structure was confirmed by transmission electron microscopy (TEM), fluorescence microscopy and attenuated total reflection (ATR) Fourier transform infrared (FTIR) spectroscopy. A sequential release of FGF-2 and CTGF was successfully achieved in this manner. FGF-2 plays an important role in stem cell proliferation and, meanwhile when accompanied with CTGF, has a slightly additive effect on fibrogenic differentiation of MSCs, whereas CTGF promotes fibrogenesis and alleviates osteogenesis, chondrogenesis and adipogenesis.
Single-step generation of metal-plasma polymer multicore@shell nanoparticles from the gas phase
Authors: Solař Pavel , Polonskyi Oleksandr , Olbricht Ansgar , Hinz Alexander , Shelemin Artem , Kylián Ondřej , Choukourov Andrei , Faupel Franz , Biederman Hynek 
Published: August 2017

AbstractNanoparticles composed of multiple silver cores and a plasma polymer shell (multicore@shell) were prepared in a single step with a gas aggregation cluster source operating with Ar/hexamethyldisiloxane mixtures and optionally oxygen. The size distribution of the metal inclusions as well as the chemical composition and the thickness of the shells were found to be controlled by the composition of the working gas mixture. Shell matrices ranging from organosilicon plasma polymer to nearly stoichiometric SiO2 were obtained. The method allows facile fabrication of multicore@shell nanoparticles with tailored functional properties, as demonstrated here with the optical response.
Nitrogen Starvation Impacts the Photosynthetic Performance of Porphyridium cruentum as Revealed by Chlorophyll a Fluorescence
Authors: Zhao Long-Sheng , Li Kang , Wang Qian-Min , Song Xiao-Yan , Su Hai-Nan , Xie Bin-Bin , Zhang Xi-Ying , Huang Feng , Chen Xiu-Lan , Zhou Bai-Cheng , Zhang Yu-Zhong 
Published: August 2017

AbstractNitrogen is one of the most important nutrients needed for plants and algae to survive, and the photosynthetic ability of algae is related to nitrogen abundance. Red algae are unique photosynthetic eukaryotic organisms in the evolution of algae, as they contain phycobilisomes (PBSs) on their thylakoid membranes. In this report, the in vivo chlorophyll (Chl) a fluorescence kinetics of nitrogen-starved Porphyridium cruentum were analyzed to determine the effects of nitrogen deficiency on photosynthetic performance using a multi-color pulse amplitude modulation (PAM) chlorophyll fluorometer. Due to nitrogen starvation, the photochemical efficiency of PSII and the activity of PSII reaction centers (RCs) decreased, and photoinhibition of PSII occurred. The water-splitting system on the donor side of PSII was seriously impacted by nitrogen deficiency, leading to the inactivation of the oxygen-evolving complex (OEC) and decreased light energy conversion efficiency. In nitrogen-starved cells, a higher proportion of energy was used for photochemical reactions, and thermal dissipation was reduced, as shown by qP and qN. The ability of nitrogen-starved cells to tolerate and resist high photon flux densities was weakened. Our results showed that the photosynthetic performance of P. cruentum was severely impacted by nitrogen deficiency.
Children, chimpanzees, and bonobos adjust the visibility of their actions for cooperators and competitors
Authors: Grueneisen Sebastian , Duguid Shona , Saur Heiko , Tomasello Michael 
Published: August 2017

AbstractChimpanzees and bonobos are highly capable of tracking other’s mental states. It has been proposed, however, that in contrast to humans, chimpanzees are only able to do this in competitive interactions but this has rarely been directly tested. Here, pairs of chimpanzees or bonobos (Study 1) and 4-year-old children (Study 2) were presented with two almost identical tasks differing only regarding the social context. In the cooperation condition, players’ interests were matched: they had to make corresponding choices to be mutually rewarded. To facilitate coordination, subjects should thus make their actions visible to their partner whose view was partially occluded. In the competition condition, players’ interests were directly opposed: the partner tried to match the subject’s choice but subjects were only rewarded if they chose differently, so that they benefited from hiding their actions. The apes successfully adapted their decisions to the social context and their performance was markedly better in the cooperation condition. Children also distinguished between the two contexts, but somewhat surprisingly, performed better in the competitive condition. These findings demonstrate experimentally that chimpanzees and bonobos can take into account what others can see in cooperative interactions. Their social-cognitive skills are thus more flexible than previously assumed.
Transcriptome-based network analysis reveals renal cell type-specific dysregulation of hypoxia-associated transcripts
Authors: Shved Natallia , Warsow Gregor , Eichinger Felix , Hoogewijs David , Brandt Simone , Wild Peter , Kretzler Matthias , Cohen Clemens D. , Lindenmeyer Maja T. 
Published: August 2017

AbstractAccumulating evidence suggests that dysregulation of hypoxia-regulated transcriptional mechanisms is involved in development of chronic kidney diseases (CKD). However, it remains unclear how hypoxia-induced transcription factors (HIFs) and subsequent biological processes contribute to CKD development and progression. In our study, genome-wide expression profiles of more than 200 renal biopsies from patients with different CKD stages revealed significant correlation of HIF-target genes with eGFR in glomeruli and tubulointerstitium. These correlations were positive and negative and in part compartment-specific. Microarrays of proximal tubular cells and podocytes with stable HIF1α and/or HIF2α suppression displayed cell type-specific HIF1/HIF2-dependencies as well as dysregulation of several pathways. WGCNA analysis identified gene sets that were highly coregulated within modules. Characterization of the modules revealed common as well as cell group- and condition-specific pathways, GO-Terms and transcription factors. Gene expression analysis of the hypoxia-interconnected pathways in patients with different CKD stages revealed an increased dysregulation with loss of renal function. In conclusion, our data clearly point to a compartment- and cell type-specific dysregulation of hypoxia-associated gene transcripts and might help to improve the understanding of hypoxia, HIF dysregulation, and transcriptional program response in CKD.
Interleukin-17 receptor A (IL-17RA) as a central regulator of the protective immune response against Giardia
Authors: Paerewijck Oonagh , Maertens Brecht , Dreesen Leentje , Van Meulder Frederik , Peelaers Iris , Ratman Dariusz , Li Robert W. , Lubberts Erik , De Bosscher Karolien , Geldhof Peter 
Published: August 2017

AbstractThe protozoan parasite Giardia is a highly prevalent intestinal pathogen with a wide host range. Data obtained in mice, cattle and humans revealed the importance of IL-17A in the development of a protective immune response against Giardia. The aim of this study was to further unravel the protective effector mechanisms triggered by IL-17A following G. muris infection in mice, by an RNA-sequencing approach. C57BL/6 WT and C57BL/6 IL-17RA KO mice were orally infected with G. muris cysts. Three weeks post infection, intestinal tissue samples were collected for RNA-sequencing, with samples from uninfected C57BL/6 WT and C57BL/6 IL-17RA KO animals serving as negative controls. Differential expression analysis showed that G. muris infection evoked the transcriptional upregulation of a wide array of genes, mainly in animals with competent IL-17RA signaling. IL-17RA signaling induced the production of various antimicrobial peptides, such as angiogenin 4 and α- and β-defensins and regulated complement activation through mannose-binding lectin 2. The expression of the receptor that regulates the secretion of IgA into the intestinal lumen, the polymeric immunoglobulin receptor, was also dependent on IL-17RA signaling. Interestingly, the transcriptome data showed for the first time the involvement of the circadian clock in the host response following Giardia infection.
Identification and Characterization of a Bacterial Homolog of Chloride Intracellular Channel (CLIC) Protein
Authors: Gururaja Rao Shubha , Ponnalagu Devasena , Sukur Sowmya , Singh Harkewal , Sanghvi Shridhar , Mei Yixiao , Jin Ding J. , Singh Harpreet 
Published: August 2017

AbstractChloride intracellular channels (CLIC) are non-classical ion channels lacking a signal sequence for membrane targeting. In eukaryotes, they are implicated in cell volume regulation, acidification, and cell cycle. CLICs resemble the omega class of Glutathione S-transferases (GST), yet differ from them in their ability to form ion channels. They are ubiquitously found in eukaryotes but no prokaryotic homolog has been characterized. We found that indanyloxyacetic acid-94 (IAA-94), a blocker of CLICs, delays the growth of Escherichia coli. In silico analysis showed that the E. coli stringent starvation protein A (SspA) shares sequence and structural homology with CLICs. Similar to CLICs, SspA lacks a signal sequence but contains an omega GST fold. Electrophysiological analysis revealed that SspA auto-inserts into lipid bilayers and forms IAA-94-sensitive ion channels. Substituting the ubiquitously conserved residue leucine 29 to alanine in the pore-forming region increased its single-channel conductance. SspA is essential for cell survival during acid-induced stress, and we found that acidic pH increases the open probability of SspA. Further, IAA-94 delayed the growth of wild-type but not sspA null mutant E. coli. Our results for the first time show that CLIC-like proteins exist in bacteria in the form of SspA, forming functional ion channels.
Soft electroporation for delivering molecules into tightly adherent mammalian cells through 3D hollow nanoelectrodes
Authors: Caprettini Valeria , Cerea Andrea , Melle Giovanni , Lovato Laura , Capozza Rosario , Huang Jian-An , Tantussi Francesco , Dipalo Michele , De Angelis Francesco 
Published: August 2017

AbstractElectroporation of in-vitro cultured cells is widely used in biological and medical areas to deliver molecules of interest inside cells. Since very high electric fields are required to electroporate the plasma membrane, depending on the geometry of the electrodes the required voltages can be very high and often critical to cell viability. Furthermore, in traditional electroporation configuration based on planar electrodes there is no a priori certain feedback about which cell has been targeted and delivered and the addition of fluorophores may be needed to gain this information. In this study we present a nanofabricated platform able to perform intracellular delivery of membrane-impermeable molecules by opening transient nanopores into the lipid membrane of adherent cells with high spatial precision and with the application of low voltages (1.5–2 V). This result is obtained by exploiting the tight seal that the cells present with 3D fluidic hollow gold-coated nanostructures that act as nanochannels and nanoelectrodes at the same time. The final soft-electroporation platform provides an accessible approach for controlled and selective drug delivery on ordered arrangements of cells.
Decoding disease-causing mechanisms of missense mutations from supramolecular structures
Authors: Hijikata Atsushi , Tsuji Toshiyuki , Shionyu Masafumi , Shirai Tsuyoshi 
Published: August 2017

AbstractThe inheritance modes of pathogenic missense mutations are known to be highly associated with protein structures; recessive mutations are mainly observed in the buried region of protein structures, whereas dominant mutations are significantly enriched in the interfaces of molecular interactions. However, the differences in phenotypic impacts among various dominant mutations observed in individuals are not fully understood. In the present study, the functional effects of pathogenic missense mutations on three-dimensional macromolecular complex structures were explored in terms of dominant mutation types, namely, haploinsufficiency, dominant-negative, or toxic gain-of-function. The major types of dominant mutation were significantly associated with the different types of molecular interactions, such as protein-DNA, homo-oligomerization, or intramolecular domain-domain interactions, affected by mutations. The dominant-negative mutations were biased toward molecular interfaces for cognate protein or DNA. The haploinsufficiency mutations were enriched on the DNA interfaces. The gain-of-function mutations were localized to domain-domain interfaces. Our results demonstrate a novel use of macromolecular complex structures for predicting the disease-causing mechanisms through inheritance modes.
Neuronal Encoding of Self and Others’ Head Rotation in the Macaque Dorsal Prefrontal Cortex
Authors: Lanzilotto M. , Gerbella M. , Perciavalle V. , Lucchetti C. 
Published: August 2017

AbstractFollowing gaze is a crucial skill, in primates, for understanding where and at what others are looking, and often requires head rotation. The neural basis underlying head rotation are deemed to overlap with the parieto-frontal attention/gaze-shift network. Here, we show that a set of neurons in monkey’s Brodmann area 9/46dr (BA 9/46dr), which is involved in orienting processes and joint attention, becomes active during self head rotation and that the activity of these neurons cannot be accounted for by saccade-related activity (head-rotation neurons). Another set of BA 9/46dr neurons encodes head rotation performed by an observed agent facing the monkey (visually triggered neurons). Among these latter neurons, almost half exhibit the intriguing property of encoding both execution and observation of head rotation (mirror-like neurons). Finally, by means of neuronal tracing techniques, we showed that BA 9/46dr takes part into two distinct networks: a dorso/mesial network, playing a role in spatial head/gaze orientation, and a ventrolateral network, likely involved in processing social stimuli and mirroring others’ head. The overall results of this study provide a new, comprehensive picture of the role of BA 9/46dr in encoding self and others’ head rotation, likely playing a role in head-following behaviors.
Mucus organisation is shaped by colonic content; a new view
Authors: Kamphuis J. B. J. , Mercier-Bonin M. , Eutamène H. , Theodorou V. 
Published: August 2017

AbstractThe colonic mucus barrier is commonly described as a continuous double layer covering the epithelium, separating the microbiota from the intestinal tissue. This model is currently considered valid throughout the colon. The colon is characterised by regional anatomo-functional specificities such as presence and consistency of contents and location. In this study, we characterised the organisation of the colonic mucus barrier in proximal and distal colon of rodents by histological and FISH staining, taking into account aforementioned specificities. By using longitudinal sections and imaging extensive areas of tissue with and without colonic contents, we have obtained a spatiotemporal overview of mucus organisation in the colon. We describe for the first time that the colonic mucus layer covers the faeces instead of the epithelium in the distal colon. This faecal mucus layer confines the microbiota to the faeces and prevents it from remaining in empty distal colon. In the proximal colon, the mucus did not form a separating layer between bacteria and epithelium. We conclude that the organisation of colonic mucus is reliant on the presence of the colonic content, and the location within the colon. Our findings reopen the discussion on the nature of the colonic mucus barrier.
Identification of Polo-like kinases as potential novel drug targets for influenza A virus
Authors: Pohl Marie O. , von Recum-Knepper Jessica , Rodriguez-Frandsen Ariel , Lanz Caroline , Yángüez Emilio , Soonthornvacharin Stephen , Wolff Thorsten , Chanda Sumit K. , Stertz Silke 
Published: August 2017

AbstractIn recent years genome-wide RNAi screens have revealed hundreds of cellular factors required for influenza virus infections in human cells. The long-term goal is to establish some of them as drug targets for the development of the next generation of antivirals against influenza. We found that several members of the polo-like kinases (PLK), a family of serine/threonine kinases with well-known roles in cell cycle regulation, were identified as hits in four different RNAi screens and we therefore studied their potential as drug target for influenza. We show that knockdown of PLK1, PLK3, and PLK4, as well as inhibition of PLK kinase activity by four different compounds, leads to reduced influenza virus replication, and we map the requirement of PLK activity to early stages of the viral replication cycle. We also tested the impact of the PLK inhibitor BI2536 on influenza virus replication in a human lung tissue culture model and observed strong inhibition of virus replication with no measurable toxicity. This study establishes the PLKs as potential drug targets for influenza and contributes to a more detailed understanding of the intricate interactions between influenza viruses and their host cells.
The mechanism for the different effects of texture on yield strength and hardness of Mg alloys
Authors: Guo Feilong , Yu Huihui , Wu Chenyu , Xin Yunchang , He Cong , Liu Qing 
Published: August 2017

AbstractA study regarding the effect of texture on tensile yield strength and hardness of an extruded Mg-15Gd-0.5Zr rod was performed, with a great emphasis laid on the relevant mechanisms. A 7% pre-tension along the extrusion direction (ED) in the solid solution condition was used to transform the texture from a broad distribution of basal poles with a peak approximately 45° with respect to the ED into a texture with basal poles largely perpendicular to the ED. This texture variation enhances the yield strength of peak aged sample by approximately 103 MPa, while hardly increases the peak hardness. The analysis about the ratio of the critical resolved shear stress (CRSS) to Schmid factor shows that this texture variation results in a larger fraction of grains favoring prismatic slip with a higher activation stress under tension along the ED. In contrast, the complex stress state during hardness test initiates multiple deformation modes, which renders the value of hardness insensitive to the texture variation. This different dependence of deformation modes on texture mainly accounts for the different increments in hardness and tensile yield strength.
Visualization and Detection of Ciliary Beating Pattern and Frequency in the Upper Airway using Phase Resolved Doppler Optical Coherence Tomography
Authors: Jing Joseph C. , Chen Jason J. , Chou Lidek , Wong Brian J. F. , Chen Zhongping 
Published: August 2017

AbstractCiliary motion plays a critical role in the overall respiratory health of the upper airway. These cilia beat at a native frequency and in a synchronized pattern to continuously transport foreign particulate trapped in a layer of mucous out of the upper airway. Disruption of ciliary motion can lead to severe respiratory diseases and compromised respiratory function. Currently, the study of cilia requires expensive high speed cameras and high powered microscopes which is unsuitable for in vivo imaging and diagnosis. Doppler based optical coherence tomography has the potential to visualize the microscopic motion of cilia during their beating cycle. We demonstrate the development of a high-speed Doppler optical coherence tomography system that not only can rapidly determine the cilia beat frequency, but also simultaneously visualize the temporal cilia beating pattern which plays critical roles in cilia function.