bluuebunny/crossref_metadata_2025_split huggingface dataset:
Host-specific assembly of sponge-associated prokaryotes at high taxonomic ranks
Authors: Steinert Georg , Rohde Sven , Janussen Dorte , Blaurock Claudia , Schupp Peter J. 
Published: May 2017

AbstractSponges (Porifera) are abundant and diverse members of benthic filter feeding communities in most marine ecosystems, from the deep sea to tropical reefs. A characteristic feature is the associated dense and diverse prokaryotic community present within the sponge mesohyl. Previous molecular genetic studies revealed the importance of host identity for the community composition of the sponge-associated microbiota. However, little is known whether sponge host-specific prokaryotic community patterns observed at 97% 16S rRNA gene sequence similarity are consistent at high taxonomic ranks (from genus to phylum level). In the present study, we investigated the prokaryotic community structure and variation of 24 sponge specimens (seven taxa) and three seawater samples from Sweden. Results show that the resemblance of prokaryotic communities at different taxonomic ranks is consistent with patterns present at 97% operational taxonomic unit level.
Substrate Rigidity Controls Activation and Durotaxis in Pancreatic Stellate Cells
Authors: Lachowski Dariusz , Cortes Ernesto , Pink Daniel , Chronopoulos Antonios , Karim Saadia A. , P. Morton Jennifer , del Río Hernández Armando E. 
Published: May 2017

AbstractPancreatic Ductal Adenocarcinoma (PDAC) is an aggressive malignancy characterised by the presence of extensive desmoplasia, thought to be responsible for the poor response of patients to systemic therapies. Pancreatic stellate cells (PSCs) are key mediators in the production of this fibrotic stroma, upon activation transitioning to a myofibroblast-like, high matrix secreting phenotype. Given their importance in disease progression, characterisation of PSC activation has been extensive, however one aspect that has been overlooked is the mechano-sensing properties of the cell. Here, through the use of a physiomimetic system that recapitulates the mechanical microenvironment found within healthy and fibrotic pancreas, we demonstrate that matrix stiffness regulates activation and mechanotaxis in PSCs. We show the ability of PSCs to undergo phenotypic transition solely as a result of changes in extracellular matrix stiffness, whilst observing the ability of PSCs to durotactically respond to stiffness variations within their local environment. Our findings implicate the mechanical microenvironment as a potent contributor to PDAC progression and survival via induction of PSC activation and fibrosis, suggesting that direct mechanical reprogramming of PSCs may be a viable alternative in the treatment of this lethal disease.
Close linkage between serum uric acid and cardiac dysfunction in patients with ischemic heart disease according to covariance structure analysis
Authors: Tanaka Yoshiro , Nagoshi Tomohisa , Kawai Makoto , Uno Goki , Ito Satoshi , Yoshii Akira , Kimura Haruka , Inoue Yasunori , Ogawa Kazuo , Tanaka Toshikazu D. , Minai Kosuke , Ogawa Takayuki , Yoshimura Michihiro 
Published: May 2017

AbstractHigh serum uric acid (UA) level has been assumed to be a risk factor for left ventricular (LV) dysfunction; however, the precise relationship between these conditions has not been fully examined because many confounding factors are associated with UA level. We herein examined the precise relationship by proposing structural equation models. The study population consisted of 1432 cases with ischemic heart disease who underwent cardiac catheterization. Multiple regression analyses and covariance structure analyses were performed to elucidate the cause-and-effect relationship between UA level and LV ejection fraction (LVEF). A path model exploring the factors contributing to LVEF showed that high UA was a significant cause of reduced LVEF (P = 0.004), independent of other significant factors. The degree of atherosclerosis, as estimated by the number of diseased coronary vessels, was significantly affected by high UA (P = 0.005); and the number of diseased coronary vessels subsequently led to reduced LVEF (P < 0.001). Another path model exploring the factors contributing to UA level showed that LVEF was a significant cause of high UA (P = 0.001), while other risk factors were also independent contributing factors. This study clearly demonstrated that there was a close link between high UA and LV dysfunction, which was represented by possible cause-and-effect relationship.
Endometriosis foci differentiation by rapid lipid profiling using tissue spray ionization and high resolution mass spectrometry
Authors: Chagovets Vitaliy V. , Wang Zhihao , Kononikhin Alexey S. , Starodubtseva Natalia L. , Borisova Anna , Salimova Dinara , Popov Igor A. , Kozachenko Andrey V. , Chingin Konstantin , Chen Huanwen , Frankevich Vladimir E. , Adamyan Leila V. , Sukhikh Gennady T. 
Published: May 2017

AbstractObtaining fast screening information on molecular composition of a tissue sample is of great importance for a disease biomarkers search and for online surgery control. In this study, high resolution mass spectrometry analysis of eutopic and ectopic endometrium tissues (90 samples) is done using direct tissue spray mass spectrometry in both positive and negative ion modes. The most abundant peaks in the both ion modes are those corresponding to lipids. Species of three lipid classes are observed, phosphatidylcholines (PC), sphingomyelins (SM) and phosphoethanolamines (PE). Direct tissue analysis gives mainly information on PC and SM lipids (29 species) in positive ion mode and PC, SM and PE lipids (50 species) in negative ion mode which gives complementary data for endometriosis foci differentiation. The biggest differences were found for phospholipids with polyunsaturated acyls and alkils. Although, tissue spray shows itself as appropriate tool for tissue investigation, caution should be paid to the interpretation of mass spectra because of their higher complexity with more possible adducts formation and multiple interferences must be taken into account. The present work extends the application of direct tissue analysis for the rapid differentiation between endometriotic tissues of different foci.
Thermally evaporated indium-free, transparent, flexible SnO2/AgPdCu/SnO2 electrodes for flexible and transparent thin film heaters
Authors: Kim Doo-Hee , Cho Kyung-Su , Kim Han-Ki 
Published: May 2017

AbstractWe investigated the characteristics of themally evaporated SnO2/Ag-Pd-Cu (APC)/SnO2 multilayer films for applications as damage-free, indium-free, flexible, and transparent electrodes for high performance flexible and transparent thin film heaters (TFHs). The top and bottom SnO2 layers and APC interlayer were prepared by a multi-source evaporation process, and the effect of the thickness of each layer on the resistivity, optical transmittance, and mechanical flexibility of the SnO2/APC/SnO2 electrodes was investigated in detail. Based on a figure of merit value, we obtained a SnO2/APC/SnO2 electrode with a low sheet resistance of 9.42 Ohm/square and a high optical transmittance of 91.14%. In addition, we examined the mechanical properties of the SnO2/APC/SnO2 electrode using various bending tests such as inner bending, outer bending, dynamic fatigue, and a twisting test. By comparing the crack shape of the SnO2/APC/SnO2 electrode bent beyond the critical bending radius (2~3 mm), we suggest a possible crack formation mechanism for the SnO2/APC/SnO2 electrodes. Furthermore, we evaluated the feasibility of the SnO2/APC/SnO2 electrodes for flexible and transparent TFHs. By correlating the sheet resistance of the SnO2/APC/SnO2 electrode and the performance of TFHs, we show the importance of transparent electrodes for high performance flexible and transparent TFHs.
Peptide Markers for Rapid Detection of KPC Carbapenemase by LC-MS/MS
Authors: Wang Honghui , Drake Steven K. , Youn Jung-Ho , Rosenberg Avi Z. , Chen Yong , Gucek Marjan , Suffredini Anthony F. , Dekker John P. 
Published: May 2017

AbstractCarbapenemase producing organisms (CPOs) represent an urgent public health threat, and the need for new rapid methods to detect these organisms has been widely recognized. CPOs carrying the Klebsiella pneumoniae carbapenemase (bla
KPC
) gene have caused outbreaks globally with substantial attributable mortality. Here we describe the validation of a rapid MS method for the direct detection of unique tryptic peptides of the KPC protein in clinical bacterial isolates with an isolate-to-result time of less than 90 minutes. Using a genoproteomic discovery approach that combines theoretical peptidome analysis and liquid chromatography-tandem MS (LC-MS/MS), we selected three high abundance peptide markers of the KPC protein that can be robustly detected following rapid tryptic digestion. Protein BLAST analysis confirmed that the chosen peptide markers were unique to KPC. A blinded validation set containing 20 KPC-positive and 80 KPC-negative clinical isolates, performed in triplicate (300 runs) demonstrated 100% sensitivity and 100% specificity (60/60 positive identifications, 240/240 negative identifications) using defined rules for positive calls. The most robust tryptic peptide marker in the validation was LTLGSALAAPQR. The peptide discovery and detection methods validated here are general and should be broadly applicable to allow the direct and rapid detection of other resistance determinants.
Building early-larval sexing systems for genetic control of the Australian sheep blow fly Lucilia cuprina using two constitutive promoters
Authors: Yan Ying , Linger Rebecca J. , Scott Maxwell J. 
Published: May 2017

AbstractTransgenic sexing strains (TSS) that carry conditional female lethal genes are advantageous for genetic control programs based on the sterile insect technique (SIT). It is desirable if females die early in development as larval diet is a major cost for mass production facilities. This can be achieved by using a gene promoter that is only active in embryos to drive expression of the tetracycline transactivator (tTA), the transcription factor commonly used in two-component TSS. While an embryo-specific promoter is ideal it may not be essential for assembling an effective TSS as tTA can be repressed by addition of tetracycline to the diet at larval and/or adult stages. Here we have investigated this idea by isolating and employing the promoters from the Lucilia spitting image and actin 5C genes to drive tTA expression in embryos and later stages. L. cuprina TSS with the tTA drivers and tTA-regulated tetO-Lshid effectors produced only females when raised on a limited tetracycline diet. The Lshid transgene contains a sex-specific intron and as a consequence only females produce LsHID protein. TSS females died at early larval stages, which makes the lines advantageous for an SIT program.
Sex-specific responses to winter flooding, spring waterlogging and post-flooding recovery in Populus deltoides
Authors: Miao Ling-Feng , Yang Fan , Han Chun-Yu , Pu Yu-Jin , Ding Yang , Zhang Li-Jia 
Published: May 2017

AbstractWinter flooding events are common in some rivers and streams due to dam constructions, and flooding and waterlogging inhibit the growth of trees in riparian zones. This study investigated sex-specific morphological, physiological and ultrastructural responses to various durations of winter flooding and spring waterlogging stresses, and post-flooding recovery characteristics in Populus deltoides. There were no significant differences in the morphological, ultrastructural and the majority of physiological traits in trees subjected to medium and severe winter flooding stresses, suggesting that males and females of P. deltoides were winter flooding tolerant, and insensitive to winter flooding duration. Males were more tolerant to winter flooding stress in terms of photosynthesis and chlorophyll fluorescence than females. Females displayed greater oxidative damage due to flooding stress than males. Males developed more efficient antioxidant enzymatic systems to control reactive oxygen species. Both sexes had similarly strong post-flooding recovery capabilities in terms of plant growth, and physiological and ultrastructural parameters. However, Males had better recovery capabilities in terms of pigment content. These results increase the understanding of poplars’s adaptation to winter flooding stress. They also elucidate sex-specific differences in response to flooding stress during the dormant season, and during post-flooding recovery periods.
Identification of a small molecule that primes the type I interferon response to cytosolic DNA
Authors: Khiar Samira , Lucas-Hourani Marianne , Nisole Sébastien , Smith Nikaïa , Helynck Olivier , Bourgine Maryline , Ruffié Claude , Herbeuval Jean-Philippe , Munier-Lehmann Hélène , Tangy Frédéric , Vidalain Pierre-Olivier 
Published: May 2017

AbstractThe type I interferon response plays a pivotal role in host defense against infectious agents and tumors, and promising therapeutic approaches rely on small molecules designed to boost this system. To identify such compounds, we developed a high-throughput screening assay based on HEK-293 cells expressing luciferase under the control of Interferon-Stimulated Response Elements (ISRE). An original library of 10,000 synthetic compounds was screened, and we identified a series of 1H-benzimidazole-4-carboxamide compounds inducing the ISRE promoter sequence, specific cellular Interferon-Stimulated Genes (ISGs), and the phosphorylation of Interferon Regulatory Factor (IRF) 3. ISRE induction by ChX710, a prototypical member of this chemical series, was dependent on the adaptor MAVS and IRF1, but was IRF3 independent. Although it was unable to trigger type I IFN secretion per se, ChX710 efficiently primed cellular response to transfected plasmid DNA as assessed by potent synergistic effects on IFN-β secretion and ISG expression levels. This cellular response was dependent on STING, a key adaptor involved in the sensing of cytosolic DNA and immune activation by various pathogens, stress signals and tumorigenesis. Our results demonstrate that cellular response to cytosolic DNA can be boosted with a small molecule, and potential applications in antimicrobial and cancer therapies are discussed.
Persistent spatial structuring of coastal ocean acidification in the California Current System
Authors: Chan F. , Barth J. A. , Blanchette C. A. , Byrne R. H. , Chavez F. , Cheriton O. , Feely R. A. , Friederich G. , Gaylord B. , Gouhier T. , Hacker S. , Hill T. , Hofmann G. , McManus M. A. , Menge B. A. , Nielsen K. J. , Russell A. , Sanford E. , Sevadjian J. , Washburn L. 
Published: May 2017

AbstractThe near-term progression of ocean acidification (OA) is projected to bring about sharp changes in the chemistry of coastal upwelling ecosystems. The distribution of OA exposure across these early-impact systems, however, is highly uncertain and limits our understanding of whether and how spatial management actions can be deployed to ameliorate future impacts. Through a novel coastal OA observing network, we have uncovered a remarkably persistent spatial mosaic in the penetration of acidified waters into ecologically-important nearshore habitats across 1,000 km of the California Current Large Marine Ecosystem. In the most severe exposure hotspots, suboptimal conditions for calcifying organisms encompassed up to 56% of the summer season, and were accompanied by some of the lowest and most variable pH environments known for the surface ocean. Persistent refuge areas were also found, highlighting new opportunities for local adaptation to address the global challenge of OA in productive coastal systems.
Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
Authors: Kim Ji Won , Kim Subin , Kim Songwon , Lee Haerim , Lee Jie-Oh , Jin Mi Sun 
Published: May 2017

AbstractThe sodium-dependent citrate transporter of Klebsiella pneumoniae (KpCitS) belongs to the 2-hydroxycarboxylate transporter (2-HCT) family and allows the cell to use citrate as sole carbon and energy source in anaerobic conditions. Here we present crystal structures of KpCitS in citrate-bound outward-facing, citrate-bound asymmetric, and citrate-free inward-facing state. The structures reveal that the KpCitS dimerization domain remains stationary throughout the transport cycle due to a hydrogen bond network as well as extensive hydrophobic interactions. In contrast, its transport domain undergoes a ~35° rigid-body rotation and a ~17 Å translocation perpendicular to the membrane to expose the substrate-binding site alternately to either side of the membrane. Furthermore, homology models of two other 2-HCT proteins based on the KpCitS structure offer structural insights into their differences in substrate specificity at a molecular level. On the basis of our results and previous biochemical data, we propose that the activity of the 2-HCT CitS involves an elevator-like movement in which the transport domain itself traverses the lipid bilayer, carrying the substrate into the cell in a sodium-dependent manner.
Insight into climate change from the carbon exchange of biocrusts utilizing non-rainfall water
Authors: Ouyang Hailong , Hu Chunxiang 
Published: May 2017

AbstractBiocrusts are model ecosystems of global change studies. However, light and non-rainfall water (NRW) were previously few considered. Different biocrust types further aggravated the inconsistence. So carbon-exchange of biocrusts (cyanobacteria crusts-AC1/AC2; cyanolichen crust-LC1; chlorolichen crust-LC2; moss crust-MC) utilizing NRW at various temperatures and light-intensities were determined under simulated and insitu mesocosm experiments. Carbon input of all biocrusts were negatively correlated with experimental temperature under all light-intensity with saturated water and stronger light with equivalent NRW, but positively correlated with temperature under weak light with equivalent NRW. LCPs and R/Pg of AC1 were lowest, followed in turn by AC2, LC2 and MC. Thus AC1 had most opportunities to use NRW, and 2.5 °C warming did cause significant changes of carbon exchange. Structural equation models further revealed that air-temperature was most important for carbon-exchange of ACs, but equally important as NRW for LC2 and MC; positive influence of warming on carbon-input in ACs was much stronger than the latter. Therefore, temperature effect on biocrust carbon-input depends on both moisture and light. Meanwhile, the role of NRW, transitional states between ACs, and obvious carbon-fixation differences between lichen crusts should be fully considered in the future study of biocrusts responding to climate change.
Novel Locally Active Estrogens Accelerate Cutaneous Wound Healing-Part 2
Authors: Brufani Mario , Rizzi Nicoletta , Meda Clara , Filocamo Luigi , Ceccacci Francesca , D’Aiuto Virginia , Bartoli Gabriele , Bella Angela La , Migneco Luisa M. , Bettolo Rinaldo Marini , Leonelli Francesca , Ciana Paolo , Maggi Adriana 
Published: May 2017

AbstractEstrogen deprivation is associated with delayed healing, while estrogen replacement therapy (ERT) accelerates acute wound healing and protects against development of chronic wounds. However, current estrogenic molecules have undesired systemic effects, thus the aim of our studies is to generate new molecules for topic administration that are devoid of systemic effects. Following a preliminary study, the new 17β-estradiol derivatives 1 were synthesized. The estrogenic activity of these novel compounds was evaluated in vitro using the cell line ERE-Luc B17 stably transfected with an ERE-Luc reporter. Among the 17β-estradiol derivatives synthesized, compounds 1e and 1f showed the highest transactivation potency and were therefore selected for the study of their systemic estrogenic activity. The study of these compounds in the ERE-Luc mouse model demonstrated that both compounds lack systemic effects when administered in the wound area. Furthermore, wound-healing experiments showed that 1e displays a significant regenerative and anti-inflammatory activity. It is therefore confirmed that this class of compounds are suitable for topical administration and have a clear beneficial effect on wound healing.
Establishment of the model system between phytochemicals and gene expression profiles in Macrosclereid cells of Medicago truncatula
Authors: Fu Fuyou , Zhang Wentao , Li Yuan-Yuan , Wang Hong Li 
Published: May 2017

AbstractMacrosclereid cells, which are a layer in the seed coat of Medicago truncatula, accumulate large amounts of phytochemicals during their development. But little is known about the complex and dynamic changes during macrosclereid cell development. To characterize the phytochemicals and the related gene expression during the development of M. truncatula macrosclereid cells, a high performance liquid chromatography-mass spectrometry (HPLC-MS) assay and microarray study were conducted on transcriptome changes from macrosclereid cell during seed development. A total of 16 flavonoids by HPLC-MS and 4861 genes exhibited significant differences at transcript levels by microarray analysis were identified for macrosclerid cells at six different time points during seed development. 815 abiotic and biotic stress genes, 223 transcriptional factors (TFs), and 155 annotated transporter proteins exhibited differential expression during the development of macrosclereid cells. A total of 102 genes were identified as involved in flavonoid biosynthesis, phenypropanoid biosynthesis, and flavone and flavonol biosynthesis. We performed a weighted gene co-regulatory network (WGCNA) to analyze the gene-flavonoid association and rebuilt the gene regulatory network during macrosclereid cell development. Our studies revealed that macrosclereid cells are, beside as the first barrier of defense against diseases, an excellent model system to investigate the regulatory network that governs flavonoid biosynthesis.
Sex differences in the clinical characteristics and brain gray matter volume alterations in unmedicated patients with major depressive disorder
Authors: Yang Xiao , Peng Zugui , Ma Xiaojuan , Meng Yajing , Li Mingli , Zhang Jian , Song Xiuliu , Liu Ye , Fan Huanhuan , Zhao Liansheng , Deng Wei , Li Tao , Ma Xiaohong 
Published: May 2017

AbstractThis study was to explore the sex differences in clinical characteristics and brain gray matter volume (GMV) alterations in 29 male patients with major depressive disorder (MDDm), 53 female patients with MDD (MDDf), and in 29 male and 53 female matched healthy controls. Maps of GMV were constructed using magnetic resonance imaging data and compared between groups. We evaluated clinical symptoms using the Hamilton Rating Scale for Depression and obtained a total score and five syndrome scores. A two-factor ANCOVA model was specified using SPM8, with sex and diagnosis as the between-subject factors. We found that: (1) significant GMV increase in the left cerebellum and GMV reduction in the bilateral middle temporal gyrus and left ventral medial prefrontal gyrus occurred selectively in male patients, while the GMV reduction in the left lingual gyrus and dorsal medial prefrontal gyrus occurred selectively in female patients; (2) MDDf may have experienced more severe sleep disturbance than MDDm; and (3) the severity of sleep symptom could be predicted by the sex specific brain structural alterations in depressions. These findings suggest that sex specific anatomical alterations existed in MDD, and these alterations were associated with the clinical symptoms.