bluuebunny/crossref_metadata_2025_split huggingface dataset:
Psychosocial Distress and Knowledge Deficiencies in Parents of Children in Ireland Who Carry an Altered Cystic Fibrosis Gene
Authors: Quigley S. J , Linnane B. , Connellan S. , Ward A. , Ryan P. 
Published: September 2017

AbstractSignificant gaps have been identified in parental understanding of CF newborn screening and the consequences of carrying an altered CF gene. Seven potential causes of psychosocial adversity arising from false positive newborn screening for CF have been identified. The current study aimed to increase parents understanding of CF, reduce their levels of stress, and investigate psychosocial adversity arising from false‐positive screening. This national study was run over one year in the Republic of Ireland. Parents were recruited for the study following a diagnostic sweat test confirming their child carried a single altered CF gene. Parents were randomly assigned into a control and intervention group, with those in the intervention group receiving a carefully designed information pack. All parents took part in semi‐structured interviews. Parents (n= 16) who received an information pack had significantly higher CF knowledge scores than parents (n= 16) in the control group. 66% of parents in the control group misunderstood the health implications of carrying an altered CF gene, no parents in the intervention group had the same misunderstanding. There was no significant difference in stress scores between the groups. Parents of infants who had more than one sweat test due to insufficient sweat quantity had higher overall stress percentiles (50%), than parents of infants who had one sweat test (30%), indicating greater parental stress. The combination of written and audio‐visual information contained in the information pack successfully increased parents comprehension of CF. The study also evaluates the potential for psychosocial adversity following false positive newborn screening for CF.
Evaluation of the Informational Content, Readability and Comprehensibility of Online Health Information on Monogenic Diabetes
Authors: Guan Yue , Maloney Kristin A. , Roter Debra L. , Pollin Toni I. 
Published: September 2017

AbstractThe purpose of this study was to assess the informational content, readability, suitability and comprehensibility of websites offering educational information about monogenic diabetes available to patients. The top 20 results from 15 queries in four search engines were screened. Content analysis was performed by two independent coders. Readability was determined using Flesch‐Kincaid grade level (FKGL) and Simplified Measure of Goobledygook (SMOG). The Comprehensibility Assessment of Materials (SAM + CAM) scale was utilized to evaluate website suitability and comprehensibility. Only 2% (N = 29) of 1200 screened websites met inclusion criteria. Content analysis showed that 16 websites presented information on at least the most common forms of MODY (1, 2 and 3), four addressed the utility of genetic counseling, and none included support resources for patients. All websites exceeded the consensus readability level (6th grade) as assessed by FKGL (10.1 grade) and SMOG (12.8 ± 1.5 grades). Although the majority (N = 20) of websites had an overall “adequate” to “superior” quality score (SAM + CAM score > = 40%), more than one‐third scored “not suitable” in categories of content, literacy demand, graphics, and learning motivation. The online educational resources for monogenic diabetes have a high readability level and require improvement in ease of use and comprehensibility for patients with diabetes.
IMPLEMENTATION NEUTRALITY AND TREATMENT EVALUATION
Authors: LeRoy Stephen F. 
Published: September 2017

Abstract:Statisticians have proposed formal techniques for evaluation of treatments, often in the context of models that do not explicitly specify how treatments are generated. Under such procedures they run the risk of attributing causation in settings where the implementation neutrality condition required for causal interpretation of parameter estimates is not satisfied. When treatment assignments are explicitly modelled, as economists recommend, these issues can be formally analysed, and the existence (or lack thereof) of implementation neutrality, and therefore quantifiable causation, can be determined. Examples are given.
Songs between cities: listening to courtesans in colonial north India
Authors: WILLIAMS RICHARD DAVID 
Published: September 2017

AbstractIn the aftermath of 1857, urban spaces and cultural practices were transformed and contested. Regional royal capitals became nodes in a new colonial geography, and the earlier regimes that had built them were recast as decadent and corrupt societies. Demolitions and new infrastructures aside, this transformation was also felt at the level of manners, sexual mores, language politics, and the performing arts. This article explores this transformation with a focus on women's language, female singers and dancers, and the men who continued to value their literary and musical skills. While dancing girls and courtesans were degraded by policy-makers and vernacular journalists alike, their Urdu compositions continued to be circulated, published, and discussed. Collections of women's biographies and lyrics gesture to the importance of embodied practices in cultivating emotional positions. This cultivation was valued in late Mughal elite society, and continued to resonate for emotional communities of connoisseurs, listeners, and readers, even as they navigated the expectations and sensibilities of colonial society.
Beyond Nostalgia: time and place in Indian Muslim politics
Authors: ZAMAN FARIDAH 
Published: September 2017

AbstractThis article begins with the premise that nostalgia haunts histories of Indian Muslim cultural and social life but remains curiously underspecified with relation to Muslim political life. By looking at the figure of Mohamed Ali Jauhar (1878–1931) and a constellation of transnational initiatives around the year 1913 in particular, it suggests ways in which we might redeploy nostalgia in order to look for temporal and spatial ambivalence in historical moments. In turn, that ambivalence points to the limitations of understanding nostalgia as purely a longing for another place and a past time.
Genetic analysis of seedlings characters associated with drought tolerance in cowpea under a controlled environment
Authors: Olajide Amos Afolarin , Ilori Christopher Olumuyiwa 
Published: September 2017

AbstractCowpea is a major source of vegetable protein but its production is constrained by drought resulting in yield loss. Developing drought tolerance varieties can enhance yield and reduce the need for supplemental irrigation. Breeding for drought tolerance requires the knowledge of its genetic basis. Genetic basis for some seedling traits in cowpea was investigated. Seven generations (P1, P2, F1, RF1, F2, BC1 and BC2) each derived from two crosses involving two highly drought tolerant (Danilla and IT97K-499-35) and one highly susceptible parents (Tvu7778) were evaluated for drought tolerance in the screen house. Data on Seedling height (SH), Seedling terminal leaflet area (SLA), Seedling Vigour (SV) and Recovery Capacity (RC) were collected. The SV was assessed on a scale of 1 (highly-tolerant) – 9 (highly-susceptible), while RC (%) was evaluated at 5 d interval for 30 d. The hybrids F1 and RF1 showed the best performances in both crosses with SV ranged from 2.50 ± 0.00 in Danilla × IT97K-499-35 cross to 6.50 ± 1.00 in the Danilla × TVU7778 cross. In both crosses, F1 and RF1 had 100.0% RC. Both dominance (46.5–68.6%) and additive (31.4–53.5%) effects were found similar and important in all the traits under water stressed. The six-parameter model indicated few cases of gene interactions, mostly dominance × dominance. Narrow sense heritability ranged from 33.5% for SH to 50.1% for SLA in the cross Danilla × TVU7778 at terminal water stress. Inheritance of these traits in cowpea involved both additive and dominance gene action. However, dominance and/or dominance × dominance effects had a more pronounced effect in genetic control of all characters.
Molecular basis of human CD22 function and therapeutic targeting
Authors: Ereño-Orbea June , Sicard Taylor , Cui Hong , Mazhab-Jafari Mohammad T. , Benlekbir Samir , Guarné Alba , Rubinstein John L. , Julien Jean-Philippe 
Published: September 2017

AbstractCD22 maintains a baseline level of B-cell inhibition to keep humoral immunity in check. As a B-cell-restricted antigen, CD22 is targeted in therapies against dysregulated B cells that cause autoimmune diseases and blood cancers. Here we report the crystal structure of human CD22 at 2.1 Å resolution, which reveals that specificity for α2-6 sialic acid ligands is dictated by a pre-formed β-hairpin as a unique mode of recognition across sialic acid-binding immunoglobulin-type lectins. The CD22 ectodomain adopts an extended conformation that facilitates concomitant CD22 nanocluster formation on B cells and binding to trans ligands to avert autoimmunity in mammals. We structurally delineate the CD22 site targeted by the therapeutic antibody epratuzumab at 3.1 Å resolution and determine a critical role for CD22 N-linked glycosylation in antibody engagement. Our studies provide molecular insights into mechanisms governing B-cell inhibition and valuable clues for the design of immune modulators in B-cell dysfunction.
Identification of isoliquiritigenin as an activator that stimulates the enzymatic production of glycyrrhetinic acid monoglucuronide
Authors: Wang Xiaoxue , Wang Dong , Huo Yixin , Dai Dazhang , Li Chihua , Li Chun , Liu Guiyan 
Published: September 2017

AbstractGlycyrrhetinic acid monoglucuronide (GAMG) is a great value-added and has considerable commercial interest due to its strong pharmacological activities and functional low-calorie sweetener. However GAMG is quite rare in natural plants, and it must be prepared from glycyrrhizin (GL) by hydrolysing one terminal glucuronic acid. β-Glucuronidase is the key enzyme in the biotransformation of GL to GAMG, but its activities need to be enhanced to facilitate the industrial large-scale production of GAMG. In this study, we identified that isoliquiritigenin (ISL), as one of chemical compositions from the total flavonoids glycyrrhiza (TFG), can significantly enhance β-glucuronidase activity in vitro. Measurements using high-performance liquid chromatography (HPLC) showed that the activity of β-glucuronidase could be increased by 2.66-fold via the addition of ISL to a β-glucuronidase solution that contained GL at a 3:10 molar ratio of ISL to GL. ISL was concluded to be an activator because ISL could reduce the Km and Ea of β-glucuronidase reacting with GL. This study sheds new light on the mechanism of β-glucuronidase and helps to make industrial production of GAMG through fermentation feasible.
Microstructural properties and enhanced photocatalytic performance of Zn doped CeO2 nanocrystals
Authors: Khan M. A. Majeed , Khan Wasi , Ahamed Maqusood , Alhazaa Abdulaziz N. 
Published: September 2017

AbstractThe microstructural, optical and photocatalytic properties of undoped and 5% Zn doped CeO2 nanocrystals (NCs) have been explored through various analytical techniques, viz. powder x-ray diffraction (PXRD), x-ray photoelectron spectroscopy (XPS), transmission electron microscopy (TEM), UV-visible, Raman and photoluminescence (PL) spectroscopy. XRD data analysis revealed face centred cubic (FCC) crystal symmetry of the samples with average crystallite size in the range of 19–24 nm. XPS results confirmed that the Zn ions exist in +2 states and successfully incorporated into the CeO2 matrix. Internal structure and morphology observed by TEM exhibited almost uniform cubical shape of the particles of average size ~20–26 nm. The enegy bandgap of undoped and Zn doped CeO2 NCs had a direct transition of 3.46 eV and 3.57 eV respectively as estimated by the optical absorption data. The increase in the bandgap revealed blue shift of absorption edge due to the quantum confinement effects. The NCs exhibited an inherent luminescence emission peak at ~408 nm in PL spectra. Improvement in the photocatalytic activity was observed for Zn incorporated sample attributed to the enhanced light absorption or/and fall in charge recombination rate between CeO2 and Zn.
A virulent clone of Devriesea agamarum affects endangered Lesser Antillean iguanas (Iguana delicatissima)
Authors: Hellebuyck Tom , Questel Karl , Pasmans Frank , Brantegem Leen Van , Philip Pascal , Martel An 
Published: September 2017

AbstractInfectious diseases affecting wildlife are drivers of global biodiversity loss. Here we report a bacterial threat to endangered wild reptiles. Since April 2011, a severe skin disease has affected free-ranging, endangered Lesser Antillean iguanas (Iguana delicatissima) on the French Caribbean island of Saint Barthélemy and we identified Devriesea agamarum as the causative agent. The presence of this bacterium was also demonstrated in healthy lizards (anoles) co-inhabiting the island. All isolates from the iguanas corresponded to a single AFLP genotype that until now has exclusively been associated with infections in lizard species in captivity. The clonal relatedness of the isolates and recent emergence of the disease suggest recent arrival of a virulent D. agamarum clone on the island. The presence of healthy but infected lizards suggests the presence of asymptomatic reservoir hosts. This is the first description of a bacterial disease that poses a conservation threat towards free-ranging squamates.
The hUC-MSCs cell line CCRC-1 represents a novel, safe and high-yielding HDCs for the production of human viral vaccines
Authors: Chen Ping , Zhang Ke-Hua , Na Tao , Wang Lin , Yin Wei-Dong , Yuan Bao-Zhu , Wang Jun-Zhi 
Published: September 2017

AbstractMRC-5 represents the most frequent human diploid cells (HDCs)-type cell substrate in the production of human viral vaccines. However, early-passage MRC-5 is diminishing and, due to both technical and ethical issues, it is extremely difficult to derive novel HDCs from fetal lung tissues, which are the common sources of HDCs. Our previous studies suggested that human umbilical cord may represent an alternative but convenient source of new HDCs. Here, we established a three-tiered cell banking system of a hUC-MSC line, designated previously as Cell Collection and Research Center-1 (CCRC-1). The full characterization indicated that the banked CCRC-1 cells were free from adventitious agents and remained non-tumorigenic. The CCRC-1 cells sustained its rapid proliferation even at passage 30 and were susceptible to the infection of a wide spectrum of viruses. Interestingly, the CCRC-1 cells showed much higher production of EV71 or Rubella viruses than MRC-5 and Vero cells when growing in serum-free medium. More importantly, the EV71 vaccine produced from CCRC-1 cells induced immunogenicity while eliciting no detectable toxicities in the tested mice. Collectively, these studies further supported that CCRC-1, and likely other hUC-MSCs as well, may serve as novel, safe and high-yielding HDCs for the production of human viral vaccines.
Integrating transcriptome and microRNA analysis identifies genes and microRNAs for AHO-induced systemic acquired resistance in N. tabacum
Authors: Chen Yongdui , Dong Jiahong , Bennetzen Jeffrey L. , Zhong Micai , Yang Jun , Zhang Jie , Li Shunlin , Hao Xiaojiang , Zhang Zhongkai , Wang Xuewen 
Published: September 2017

Abstract3-Acetonyl-3-hydroxyoxindole (AHO) induces systemic acquired resistance (SAR) in Nicotiana. However, the underlying molecular mechanism is not well understood. To understand the molecular regulation during SAR induction, we examined mRNA levels, microRNA (miRNA) expression, and their regulatory mechanisms in control and AHO-treated tobacco leaves. Using RNA-seq analysis, we identified 1,445 significantly differentially expressed genes (DEGs) at least 2 folds with AHO treatment. The DEGs significantly enriched in six metabolism pathways including phenylpropanoid biosynthesis, sesquiterpenoid and triterpenoid biosynthesis for protective cuticle and wax. Key DEGs including PALs and PR-10 in salicylic acid pathway involved in SAR were significantly regulated. In addition, we identified 403 miRNAs belonging to 200 miRNA families by miRNA sequencing. In total, AHO treatment led to 17 up- and 6 down-regulated at least 2 folds (Wald test, P < 0.05) miRNAs (DEMs), respectively. Targeting analysis implicated four DEMs regulating three DEGs involved in disease resistance, including miR156, miR172f, miR172g, miR408a, SPL6 and AP2. We concluded that both mRNA and miRNA regulation enhances AHO-induced SAR. These data regarding DEGs, miRNAs, and their regulatory mechanisms provide molecular evidence for the mechanisms involved in tobacco SAR, which are likely to be present in other plants.
A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis
Authors: Bhagavat Raghu , Kim Heung-Bok , Kim Chang-Yub , Terwilliger Thomas C. , Mehta Dolly , Srinivasan Narayanaswamy , Chandra Nagasuma 
Published: September 2017

AbstractNucleoside tri-phosphates (NTP) form an important class of small molecule ligands that participate in, and are essential to a large number of biological processes. Here, we seek to identify the NTP binding proteome (NTPome) in M. tuberculosis (M.tb), a deadly pathogen. Identifying the NTPome is useful not only for gaining functional insights of the individual proteins but also for identifying useful drug targets. From an earlier study, we had structural models of M.tb at a proteome scale from which a set of 13,858 small molecule binding pockets were identified. We use a set of NTP binding sub-structural motifs derived from a previous study and scan the M.tb pocketome, and find that 1,768 proteins or 43% of the proteome can theoretically bind NTP ligands. Using an experimental proteomics approach involving dye-ligand affinity chromatography, we confirm NTP binding to 47 different proteins, of which 4 are hypothetical proteins. Our analysis also provides the precise list of binding site residues in each case, and the probable ligand binding pose. As the list includes a number of known and potential drug targets, the identification of NTP binding can directly facilitate structure-based drug design of these targets.
Stoichiometric plasticity of microbial communities is similar between litter and soil in a tropical rainforest
Authors: Fanin Nicolas , Fromin Nathalie , Barantal Sandra , Hättenschwiler Stephan 
Published: September 2017

AbstractHeterotrophic microorganisms are commonly thought to be stoichiometrically homeostatic but their stoichiometric plasticity has rarely been examined, particularly in terrestrial ecosystems. Using a fertilization experiment in a tropical rainforest, we evaluated how variable substrate stoichiometry may influence the stoichiometry of microbial communities in the leaf litter layer and in the underlying soil. C:N:P ratios of the microbial biomass were higher in the organic litter layer than in the underlying mineral soil. Regardless of higher ratios for litter microbial communities, C, N, and P fertilization effects on microbial stoichiometry were strong in both litter and soil, without any fundamental difference in plasticity between these two communities. Overall, N:P ratios were more constrained than C:nutrient ratios for both litter and soil microbial communities, suggesting that stoichiometric plasticity arises because of a decoupling between C and nutrients. Contrary to the simplifying premise of strict homeostasis in microbial decomposers, we conclude that both litter and soil communities can adapt their C:N:P stoichiometry in response to the stoichiometric imbalance of available resources.
Multiple regulatory mechanisms of the biological function of NRF3 (NFE2L3) control cancer cell proliferation
Authors: Chowdhury A. M. Masudul Azad , Katoh Hiroki , Hatanaka Atsushi , Iwanari Hiroko , Nakamura Nanami , Hamakubo Takao , Natsume Tohru , Waku Tsuyoshi , Kobayashi Akira 
Published: September 2017

AbstractAccumulated evidence suggests a physiological relationship between the transcription factor NRF3 (NFE2L3) and cancers. Under physiological conditions, NRF3 is repressed by its endoplasmic reticulum (ER) sequestration. In response to unidentified signals, NRF3 enters the nucleus and modulates gene expression. However, molecular mechanisms underlying the nuclear translocation of NRF3 and its target gene in cancer cells remain poorly understood. We herein report that multiple regulation of NRF3 activities controls cell proliferation. Our analyses reveal that under physiological conditions, NRF3 is rapidly degraded by the ER-associated degradation (ERAD) ubiquitin ligase HRD1 and valosin-containing protein (VCP) in the cytoplasm. Furthermore, NRF3 is also degraded by β-TRCP, an adaptor for the Skp1-Cul1-F-box protein (SCF) ubiquitin ligase in the nucleus. The nuclear translocation of NRF3 from the ER requires the aspartic protease DNA-damage inducible 1 homolog 2 (DDI2) but does not require inhibition of its HRD1-VCP-mediated degradation. Finally, NRF3 mediates gene expression of the cell cycle regulator U2AF homology motif kinase 1 (UHMK1) for cell proliferation. Collectively, our study provides us many insights into the molecular regulation and biological function of NRF3 in cancer cells.
Role of the Transforming Growth Factor-β in regulating hepatocellular carcinoma oxidative metabolism
Authors: Soukupova Jitka , Malfettone Andrea , Hyroššová Petra , Hernández-Alvarez María-Isabel , Peñuelas-Haro Irene , Bertran Esther , Junza Alexandra , Capellades Jordi , Giannelli Gianluigi , Yanes Oscar , Zorzano Antonio , Perales José Carlos , Fabregat Isabel 
Published: September 2017

AbstractTransforming Growth Factor beta (TGF-β) induces tumor cell migration and invasion. However, its role in inducing metabolic reprogramming is poorly understood. Here we analyzed the metabolic profile of hepatocellular carcinoma (HCC) cells that show differences in TGF-β expression. Oxygen consumption rate (OCR), extracellular acidification rate (ECAR), metabolomics and transcriptomics were performed. Results indicated that the switch from an epithelial to a mesenchymal/migratory phenotype in HCC cells is characterized by reduced mitochondrial respiration, without significant differences in glycolytic activity. Concomitantly, enhanced glutamine anaplerosis and biosynthetic use of TCA metabolites were proved through analysis of metabolite levels, as well as metabolic fluxes from U-13C6-Glucose and U-13C5-Glutamine. This correlated with increase in glutaminase 1 (GLS1) expression, whose inhibition reduced cell migration. Experiments where TGF-β function was activated with extracellular TGF-β1 or inhibited through TGF-β receptor I silencing showed that TGF-β induces a switch from oxidative metabolism, coincident with a decrease in OCR and the upregulation of glutamine transporter Solute Carrier Family 7 Member 5 (SLC7A5) and GLS1. TGF-β also regulated the expression of key genes involved in the flux of glycolytic intermediates and fatty acid metabolism. Together, these results indicate that autocrine activation of the TGF-β pathway regulates oxidative metabolism in HCC cells.