bluuebunny/crossref_metadata_2025_split huggingface dataset:
The dynamics of intracellular water constrains glycolytic oscillations in Saccharomyces cerevisiae
Authors: Thoke Henrik S. , Thorsteinsson Sigmundur , Stock Roberto P. , Bagatolli Luis A. , Olsen Lars F. 
Published: November 2017

AbstractWe explored the dynamic coupling of intracellular water with metabolism in yeast cells. Using the polarity-sensitive probe 6-acetyl-2-dimethylaminonaphthalene (ACDAN), we show that glycolytic oscillations in the yeast S. cerevisiae BY4743 wild-type strain are coupled to the generalized polarization (GP) function of ACDAN, which measures the physical state of intracellular water. We analysed the oscillatory dynamics in wild type and 24 mutant strains with mutations in many different enzymes and proteins. Using fluorescence spectroscopy, we measured the amplitude and frequency of the metabolic oscillations and ACDAN GP in the resting state of all 25 strains. The results showed that there is a lower and an upper threshold of ACDAN GP, beyond which oscillations do not occur. This critical GP range is also phenomenologically linked to the occurrence of oscillations when cells are grown at different temperatures. Furthermore, the link between glycolytic oscillations and the ACDAN GP value also holds when ATP synthesis or the integrity of the cell cytoskeleton is perturbed. Our results represent the first demonstration that the dynamic behaviour of a metabolic process can be regulated by a cell-wide physical property: the dynamic state of intracellular water, which represents an emergent property.
Isochlorogenic acid C prevents enterovirus 71 infection via modulating redox homeostasis of glutathione
Authors: Cao Zeyu , Ding Yue , Cao Liang , Ding Gang , Wang Zhenzhong , Xiao Wei 
Published: November 2017

AbstractEnterovirus 71 (EV71) is a key pathogen of hand, foot and mouth disease (HFMD) in children under 6 years of age. The antiviral potency of antioxidant isochlorogenic acid C (ICAC) extracted from foods was evaluated in cellular and animal models. First, the cytotoxicity of ICAC on Vero cells was investigated. The viral plaques, cytopathic effects and yield induced by EV71 infection were obviously reduced by ICAC, which was consistent with the investigation of VP1 transcripts and protein expression. Moreover, the mortality, weight loss and limb paralysis of mice caused by EV71 challenge were remarkably relieved by ICAC injection, which was achieved through decreases in the viral load and cytokine secretion in the mouse brain. Further biochemical assays showed that ICAC modulated several antioxidant enzymes involved in reduced and oxidized glutathione (GSH and GSSG) homeostasis, including glutathione reductase (GR), glutathione peroxidase (GPX), and glucose-6-phosphate dehydrogenase (G6PD), resulting in restoration of the GSH/GSSG ratio and reactive oxygen species (ROS) level. Finally, the antiviral effects of ICAC were dose-dependently disrupted by BSO, a biosynthesis inhibitor of GSH. This study indicated that ICAC acted as an antioxidant and prevented EV71 infection by modulating the redox homeostasis of glutathione.
Relative importance of dietary uptake and waterborne exposure for a leaf-shredding amphipod exposed to thiacloprid-contaminated leaves
Authors: Englert Dominic , Zubrod Jochen P. , Pietz Sebastian , Stefani Sonja , Krauss Martin , Schulz Ralf , Bundschuh Mirco 
Published: November 2017

AbstractSystemic neonicotinoids are commonly used in forest pest management programs. Senescent leaves containing neonicotinoids may, however, fall from treated trees into nearby streams. There, leaf-shredding invertebrates are particularly exposed due to their diet (feeding on neonicotinoid-contaminated leaves) or collaterally via the water phase (leaching of a neonicotinoid from leaves) – a fact not considered during aquatic environmental risk assessment. To unravel the relevance of these pathways we used leaves from trees treated with the neonicotinoid thiacloprid to subject the amphipod shredder Gammarus fossarum for 21 days (n = 40) either to dietary, waterborne or a combined (dietary + waterborne) exposure. Dietary exposure caused – relative to the control – similar reductions in gammarids’ leaf consumption (~35%) and lipid content (~20%) as observed for the waterborne exposure pathway (30 and 22%). The effect sizes observed under combined exposure suggested additivity of effects being largely predictable using the reference model “independent action”. Since gammarids accumulated – independent of the exposure pathway – up to 280 ng thiacloprid/g, dietary exposure may also be relevant for predators which prey on Gammarus. Consequently, neglecting dietary exposure might underestimate the environmental risk systemic insecticides pose for ecosystem integrity calling for its consideration during the evaluation and registration of chemical stressors.
Increased serum vascular endothelial growth factor is associated with acute viral encephalitis in Bangladeshi children
Authors: Mori Daisuke , Khanam Wahida , Sheikh Rahamot Ali , Tabib S. M. Shahnawaz Bin , Ikebe Emi , Hossain Mohammad Moshaddeque , Iha Hidekatsu , Ahmed Kamruddin 
Published: November 2017

AbstractEncephalitis causes significant global morbidity and mortality. A large number of viruses cause encephalitis, and their geographic and temporal distributions vary. In many encephalitis cases, the virus cannot be detected, even after extensive testing. This is one challenge in management of the encephalitis patient. Since cytokines are pivotal in any form of inflammation and vary according to the nature of the inflammation, we hypothesized cytokine levels would allow us to discriminate between encephalitis caused by viruses and other aetiologies. This pilot study was conducted in a tertiary care hospital in Dhaka, Bangladesh. Viral detection was performed by polymerase chain reaction using patient cerebrospinal fluid. Acute phase reactants and cytokines were detected in patient serum. Of the 29 biomarkers assessed using the Wilcoxon rank-sum test, only vascular endothelial growth factor (VEGF) was significantly higher (P = 0.0015) in viral-positive compared with virus–negative encephalitis patients. The area under the curve (AUC) for VEGF was 0.82 (95% confidence interval: 0.66–0.98). Serum VEGF may discriminate between virus-positive and virus-negative encephalitis. Further study will be needed to confirm these findings.
Prediction of plasma efavirenz concentrations among HIV-positive patients taking efavirenz-containing combination antiretroviral therapy
Authors: Huang Sung-Hsi , Lin Shu-Wen , Chang Sui-Yuan , Lin Ya-Ting , Chiang Chieh , Hsiao Chin-Fu , Sun Hsin-Yun , Liu Wen-Chun , Su Yi-Ching , Hung Chien-Ching , Chang Shan-Chwen 
Published: November 2017

AbstractWe investigated the predictors of plasma mid-dose concentrations (C12) of efavirenz by enrolling 456 HIV-positive patients who had received 2 nucleos(t)ide reverse-transcriptase inhibitors plus efavirenz (600 mg daily) for 2 weeks or longer and had their CYP2B6 516G>T polymorphism and efavirenz C12 determined. The median efavirenz C12 was 2.41 mg/L (IQR, 1.93–3.14). In analysis of covariance models, patients with CYP2B6 516GT and TT genotypes compared to those with GG genotype had higher efavirenz C12 (for GT genotype, an increase by 0.976 mg/L [95%CI, 0.765–1.188], and TT genotype, 4.871 mg/L [95%CI, 4.126–5.616]), while per 10-kg increment in weight decreased C12 by 0.199 mg/L (95%CI, 0.111–0.287). Models incorporating CYP2B6 516G>T polymorphism and weight had moderate predictive values in predicting efavirenz C12 ≥ 2 mg/L (ROC area under curve = 0.706 [95%CI, 0.656–0.756]). In the absence of CYP2B6 516G>T polymorphism, weight ≤58 kg provided better predictabilities for efavirenz C12 ≥ 2 mg/L (probability, 77.1% [95%CI, 69.0–83.5%] for weight = 50 kg and 70.6% [95%CI, 64.1–76.4%] for weight = 58 kg).
Genome-wide meta-analysis in Japanese populations identifies novel variants at the TMC6–TMC8 and SIX3–SIX2 loci associated with HbA1c
Authors: Hachiya Tsuyoshi , Komaki Shohei , Hasegawa Yutaka , Ohmomo Hideki , Tanno Kozo , Hozawa Atsushi , Tamiya Gen , Yamamoto Masayuki , Ogasawara Kuniaki , Nakamura Motoyuki , Hitomi Jiro , Ishigaki Yasushi , Sasaki Makoto , Shimizu Atsushi 
Published: November 2017

AbstractGlycated haemoglobin (HbA1c) is widely used as a biomarker for the diagnosis of diabetes, for population-level screening, and for monitoring the glycaemic status during medical treatment. Although the heritability of HbA1c has been estimated at ~55–75%, a much smaller proportion of phenotypic variance is explained by the HbA1c-associated variants identified so far. To search for novel loci influencing the HbA1c levels, we conducted a genome-wide meta-analysis of 2 non-diabetic Japanese populations (n = 7,704 subjects in total). We identified 2 novel loci that achieved genome-wide significance: TMC6–TMC8 (P = 5.3 × 10−20) and SIX3–SIX2 (P = 8.6 × 10−9). Data from the largest-scale European GWAS conducted for HbA1c supported an association between the novel TMC6–TMC8 locus and HbA1c (P = 2.7 × 10−3). The association analysis with glycated albumin and glycation gap conducted using our Japanese population indicated that the TMC6–TMC8 and SIX3–SIX2 loci may influence the HbA1c level through non-glycaemic and glycaemic pathways, respectively. In addition, the pathway-based analysis suggested that the linoleic acid metabolic and 14-3-3-mediated signalling pathways were associated with HbA1c. These findings provide novel insights into the molecular mechanisms that modulate the HbA1c level in non-diabetic subjects.
Quantitative analysis of biofluid spots by coated blade spray mass spectrometry, a new approach to rapid screening
Authors: Gómez-Ríos Germán Augusto , Tascon Marcos , Reyes-Garcés Nathaly , Boyacı Ezel , Poole Justen , Pawliszyn Janusz 
Published: November 2017

AbstractThis study demonstrates the quantitative capabilities of coated blade spray (CBS) mass spectrometry (MS) for the concomitant analysis of multiple target substances in biofluid spots. In CBS-MS the analytes present in a given sample are first isolated and enriched in the thin coating of the CBS device. After a quick rinsing of the blade surface, as to remove remaining matrix, the analytes are quickly desorbed with the help of a solvent and then directly electrosprayed into the MS analyzer. Diverse pain management drugs, controlled substances, and therapeutic medications were successfully determined using only 10 µL of biofluid, with limits of quantitation in the low/sub ng·mL−1 level attained within 7 minutes.
Theoretical investigations on microwave Fano resonances in 3D-printable hollow dielectric resonators
Authors: Lee Eunsongyi , Seo In Cheol , Jeong Hoon Yeub , An Soo-Chan , Jun Young Chul 
Published: November 2017

AbstractHigh-index dielectric structures have recently been studied intensively for Mie resonances at optical frequencies. These dielectric structures can enable extreme light manipulation, similar to that which has been achieved with plasmonic nanostructures. In the microwave region, dielectric resonators and metamaterials can be fabricated directly using 3D printing, which is advantageous for fabricating structurally complicated 3D geometries. It is therefore especially suitable for the fabrication of subwavelength structures. Here we report theoretical investigations on microwave Fano resonances in 3D-printable dielectric materials and structures. In particular, we propose and analyse 3D-printable, hollow, dielectric resonators with relatively low refractive indices, which exhibit sharp Fano resonances. We can control the interaction between bright and dark modes in a coupled dielectric particle pair by adjusting the inner-hole size, and thus we can increase the radiative Q factors further. We also find that Fano resonances in these hollow dielectric resonators are very sensitive to an index change in the surrounding medium, which could be useful for long-distance environmental sensing. New possibilities and opportunities are opening up with the rapid development of 3D-printing technologies. Our findings and the detailed investigations reported here can provide useful guidelines for future photonic devices based on 3D-printable materials and structures.
A novel bi-domain plant defensin MtDef5 with potent broad-spectrum antifungal activity binds to multiple phospholipids and forms oligomers
Authors: Islam Kazi T. , Velivelli Siva L. S. , Berg R. Howard , Oakley Blake , Shah Dilip M. 
Published: November 2017

AbstractDefensins are cysteine-rich cationic antimicrobial peptides contributing to the innate immunity in plants. A unique gene encoding a highly cationic bi-domain defensin MtDef5 has been identified in a model legume Medicago truncatula. MtDef5 consists of two defensin domains of 50 amino acids each linked by a 7-amino acid peptide. It exhibits broad-spectrum antifungal activity against filamentous fungi at submicromolar concentrations. It rapidly permeabilizes the plasma membrane of the ascomycete fungi Fusarium graminearum and Neurospora crassa and induces accumulation of reactive oxygen species. It is internalized by these fungi, but uses spatially distinct modes of entry into these fungi. It co-localizes with cellular membranes, travels to nucleus and becomes dispersed in other subcellular locations. It binds to several membrane-resident phospholipids with preference for phosphatidylinositol monophosphates and forms oligomers. Mutations of the cationic amino acids present in the two γ-core motifs of this defensin that eliminate oligomerization also knockout its ability to induce membrane permeabilization and fungal growth arrest. MtDef5 is the first bi-domain plant defensin that exhibits potent broad-spectrum antifungal activity, recruits multiple membrane phospholipids and forms oligomers in their presence. These findings raise the possibility that MtDef5 might be useful as a novel antifungal agent in transgenic crops.
Globular Shaped Polypyrrole Doped Well-Dispersed Functionalized Multiwall Carbon Nanotubes/Nafion Composite for Enzymatic Glucose Biosensor Application
Authors: Shrestha Bishnu Kumar , Ahmad Rafiq , Shrestha Sita , Park Chan Hee , Kim Cheol Sang 
Published: November 2017

AbstractHerein, we report preparation of a bio-nanohybrid material of homogenously dispersed functionalized multiwall carbon nanotubes (fMWCNTs) in Nafion (Nf) doped with polypyrrole (PPy) and followed by one-step in situ electrochemical polymerization along with glucose oxidase (GOx) on a platinum (Pt) electrode. The bioengineered Nf-GOx-fMWCNTs-PPy/Pt electrode showed excellent electrocatalytic performance to detect glucose with a high sensitivity (54.2 μAmM−1 cm−2) in linear range of up to 4.1 mM as well as a low detection limit of 5 μM (S/N = 3), response time within 4 s, good selectivity, stability, and practical applicability. It is our hope that the comprehensive results will contribute to design an efficient glucose biosensor with practical prospects for biomedical applications.
High miR-205 expression in normal epithelium is associated with biochemical failure - an argument for epithelial crosstalk in prostate cancer?
Authors: Nordby Yngve , Richardsen Elin , Ness Nora , Donnem Tom , Patel Hiten R. H. , Busund Lill-Tove , Bremnes Roy M. , Andersen Sigve 
Published: November 2017

AbstractDue to insufficient prognostic tools, failure to predict aggressive prostate cancer (PC) has left patient selection for radical treatment an unsolved challenge. This has resulted in overtreatment with radical therapy. Better prognostic tools are urgently warranted. MicroRNAs (miRs) have emerged as important regulators of cellular pathways, resulting in altered gene expressions. miR-205 has previously been observed downregulated in PC, acting as tumor suppressor. Herein, the expression of miR-205 in prostate tissue was examined in a large, well-described cohort of 535 Norwegian prostatectomy patients. Using in situ hybridization, miR-205 expression was semiquantatively measured in normal and tumor tissues from radical prostatectomy specimens. Associations with clinicopathological data and PC relapse were calculated. Expression of miR-205 was lower in tumor epithelium compared to normal epithelium. No association was observed between miR-205 expression in primary tumor epithelium and cancer relapse. In contrast, high expression of miR-205 in normal epithelium was independently associated with biochemical relapse (HR = 1.64, p = 0.003). A prognostic importance of miR-205 expression was only found in the normal epithelium, raising the hypothesis of epithelial crosstalk between normal and tumor epithelium in PC. This finding supports the proposed novel hypothesis of an anti-cancerogenous function of normal epithelium in tumor tissue.
Insect-based diet, a promising nutritional source, modulates gut microbiota composition and SCFAs production in laying hens
Authors: Borrelli Luca , Coretti Lorena , Dipineto Ludovico , Bovera Fulvia , Menna Francesca , Chiariotti Lorenzo , Nizza Antonio , Lembo Francesca , Fioretti Alessandro 
Published: November 2017

AbstractInsects could be potential nutritional sources both for humans and animals. Among these, Hermetia illucens, with good amount of chitin and proteins, represents a suitable diet replacement for laying hens. Little is known about insect diet effects on the microbial ecology of the gastrointestinal tract and bacterial metabolites production. In this study we investigated the effect of H. illucens larvae meal administration on cecal microbiota and short chain fatty acids (SCFAs) production in laying hens. 16S rDNA sequencing showed strong differences between cecal microbiota of soybean (SD) and insect diet (ID) groups both in type and relative abundance (unweighted and weighted beta diversity) of microbial species. In particular, Bacteroides plebeius, Elusimicrobium minutum, Alkaliphilus transvaalensis, Christensenella minuta, Vallitalea guaymasensis and Flavonifractor plautii represented the principal contributors of changes in gut microbiota composition of ID group (FDR p-values < 0.05). Of these, F. plautii, C. minuta and A. transvaalensis have the potential to degrade the chitin’s insect meal and correlated with the observed high levels of gut SCFAs produced in ID group. These microorganisms may thus connect the chitin degradation with high SCFAs production. Our results suggest H. illucens as a potential prebiotic by well feeding gut microbiota.
Nanocarrier-mediated delivery of α-mangostin for non-surgical castration of male animals
Authors: Yostawonkul Jakarwan , Surassmo Suvimol , Namdee Katawut , Khongkow Mattaka , Boonthum Chatwalee , Pagseesing Sasithon , Saengkrit Nattika , Ruktanonchai Uracha Rungsardthong , Chatdarong Kaywalee , Ponglowhapan Suppawiwat , Yata Teerapong 
Published: November 2017

AbstractThe overpopulation of abandoned and stray companion animals has become a global crisis. The main purpose of this study was to develop a novel nanomedicine-based antifertility compound for non-surgical castration of male animals. Mangosteen (Garcinia mangostana L) pericarp extract has been shown to exhibit anti-fertility property. α-mangostin (AM)-loaded nanostructured lipid carrier (AM-NLC) was developed to improve male germ cell apoptosis. This study was conducted to investigate physicochemical properties of AM-NLC and determine the biological effects of AM-NLC on spermatogonia cells and testicular explants obtained from castrated testes. AM-NLC was produced through a hot homogenization technique. The negatively charged particle of AM-NLC was nano-sized with a narrow dispersity. AM-NLC exhibited antiproliferative activity towards spermatogonium cells. It induced apoptosis in the cells. In addition, AM-NLC exhibited anti-inflammatory activities in lipopolysaccharide-activated macrophages. Abnormal anatomy of seminiferous tubule was noted following treatment of testicular explant with AM-NLC. This nanomedicine-based sterilant would be a promising platform that may have utility in non-surgical castration of male animals by intra-testicular injection.
The Aβ oligomer eliminating D-enantiomeric peptide RD2 improves cognition without changing plaque pathology
Authors: van Groen Thomas , Schemmert Sarah , Brener Oleksandr , Gremer Lothar , Ziehm Tamar , Tusche Markus , Nagel-Steger Luitgard , Kadish Inga , Schartmann Elena , Elfgen Anne , Jürgens Dagmar , Willuweit Antje , Kutzsche Janine , Willbold Dieter 
Published: November 2017

AbstractWhile amyloid-β protein (Aβ) aggregation into insoluble plaques is one of the pathological hallmarks of Alzheimer’s disease (AD), soluble oligomeric Aβ has been hypothesized to be responsible for synapse damage, neurodegeneration, learning, and memory deficits in AD. Here, we investigate the in vitro and in vivo efficacy of the d-enantiomeric peptide RD2, a rationally designed derivative of the previously described lead compound D3, which has been developed to efficiently eliminate toxic Aβ42 oligomers as a promising treatment strategy for AD. Besides the detailed in vitro characterization of RD2, we also report the results of a treatment study of APP/PS1 mice with RD2. After 28 days of treatment we observed enhancement of cognition and learning behaviour. Analysis on brain plaque load did not reveal significant changes, but a significant reduction of insoluble Aβ42. Our findings demonstrate that RD2 was significantly more efficient in Aβ oligomer elimination in vitro compared to D3. Enhanced cognition without reduction of plaque pathology in parallel suggests that synaptic malfunction due to Aβ oligomers rather than plaque pathology is decisive for disease development and progression. Thus, Aβ oligomer elimination by RD2 treatment may be also beneficial for AD patients.
Crystallite size-dependent metastable phase formation of TiAlN coatings
Authors: Hans Marcus , Music Denis , Chen Yen-Ting , Patterer Lena , Eriksson Anders O. , Kurapov Denis , Ramm Jürgen , Arndt Mirjam , Rudigier Helmut , Schneider Jochen M. 
Published: November 2017

AbstractIt is well known that surface energy differences thermodynamically stabilize nanocrystalline γ-Al2O3 over α-Al2O3. Here, through correlative ab initio calculations and advanced material characterization at the nanometer scale, we demonstrate that the metastable phase formation of nanocrystalline TiAlN, an industrial benchmark coating material, is crystallite size-dependent. By relating calculated surface and volume energy contributions to the total energy, we predict the chemical composition-dependent phase boundary between the two metastable solid solution phases of cubic and wurzite Ti1−xAlxN. This phase boundary is characterized by the critical crystallite size d
critical
. Crystallite size-dependent phase stability predictions are in very good agreement with experimental phase formation data where x was varied by utilizing combinatorial vapor phase condensation. The wide range of critical Al solubilities for metastable cubic Ti1−xAlxN from xmax = 0.4 to 0.9 reported in literature and the sobering disagreement thereof with DFT predictions can at least in part be rationalized based on the here identified crystallite size-dependent metastable phase formation. Furthermore, it is evident that predictions of critical Al solubilities in metastable cubic TiAlN are flawed, if the previously overlooked surface energy contribution to the total energy is not considered.