bluuebunny/crossref_metadata_2025_split huggingface dataset:
Intracellular immunization against HIV infection with an intracellular antibody that mimics HIV integrase binding to the cellular LEDGF protein
Authors: Bao Leyuan , Hannon Clare , Cruz-Mignoni Abimael , Ptchelkine Denis , Sun Mei-yi , Miller Ami , Bunjobpol Wilawan , Quevedo Camilo E. , Derveni Mariliza , Chambers Jennifer , Simmons Alison , Phillips Simon E. V. , Rabbitts Terence H. 
Published: November 2017

AbstractPreventing the protein-protein interaction of the cellular chromatin binding protein Lens Epithelium-Derived Growth Factor (LEDGF) and human immunodeficiency virus (HIV) integrase is an important possible strategy for anti-viral treatment for AIDS. We have used Intracellular Antibody Capture technology to isolate a single VH antibody domain that binds to LEDGF. The crystal structure of the LEDGF-VH complex reveals that the single domain antibody mimics the effect of binding of HIV integrase to LEDGF which is crucial for HIV propagation. CD4-expressing T cell lines were constructed to constitutively express the LEDGF-binding VH and these cells showed interference with HIV viral replication, assayed by virus capsid protein p24 production. Therefore, pre-conditioning cells to express antibody fragments confers effective intracellular immunization for preventing chronic viral replication and can be a way to prevent HIV spread in infected patients. This raises the prospect that intracellular immunization strategies that focus on cellular components of viral integrase protein interactions can be used to combat the problems associated with latent HIV virus re-emergence in patients. New genome editing development, such as using CRISPR/cas9, offer the prospect intracellularly immunized T cells in HIV+ patients.
Single-molecule imaging reveals dimerization/oligomerization of CXCR4 on plasma membrane closely related to its function
Authors: Ge Baosheng , Lao Jun , Li Jiqiang , Chen Yao , Song Yanzhuo , Huang Fang 
Published: November 2017

AbstractDimerization and oligomerization of G-protein coupled receptors (GPCRs) have emerged as important characters during their trans-membrane signal transduction. However, until now the relationship between GPCR dimerization and their trans-membrane signal transduction function is still uncovered. Here, using pertussis toxin (PTX) to decouple the receptor from G protein complex and with single-molecule imaging, we show that in the presence of agonist, cells treated with PTX showed a decrease in the number of dimers and oligomers on the cell surface compared with untreated ones, which suggests that oligomeric status of CXCR4 could be significantly influenced by the decoupling of G protein complex during its signal transduction process. Moreover, with chlorpromazine (CPZ) to inhibit internalization of CXCR4, it was found that after SDF-1α stimulation, cells treated with CPZ showed more dimers and oligomers on the cell surface than untreated ones, which suggest that dimers and oligomers of CXCR4 tend to internalize more easily than monomers. Taken together, our results demonstrate that dimerization and oligomerization of CXCR4 is closely related with its G protein mediated pathway and β-arrestin mediated internalization process, and would play an important role in regulating its signal transduction functions.
Seismogenesis of dual subduction beneath Kanto, central Japan controlled by fluid release
Authors: Ji Yingfeng , Yoshioka Shoichi , Manea Vlad C. , Manea Marina 
Published: November 2017

AbstractDual subduction represents an unusual case of subduction where one oceanic plate subducts on top of another, creating a highly complex tectonic setting. Because of the complex interaction between the two subducted plates, the origin of seismicity in such region is still not fully understood. Here we investigate the thermal structure of dual subduction beneath Kanto, central Japan formed as a consequence of a unique case of triple trench junction. Using high-resolution three-dimensional thermo-mechanical models tailored for the specific dual subduction settings beneath Kanto, we show that, compared with single-plate subduction systems, subduction of double slabs produces a strong variation of mantle flow, thermal and fluid release pattern that strongly controls the regional seismicity distribution. Here the deepening of seismicity in the Pacific slab located under the Philippine Sea slab is explained by delaying at greater depths (~150 km depth) of the eclogitization front in this region. On the other hand, the shallower seismicity observed in the Philippine Sea slab is related to a young and warm plate subduction and probably to the presence of a hot mantle flow traveling underneath the slab and then moving upward on top of the slab.
FOXP2 variation in great ape populations offers insight into the evolution of communication skills
Authors: Staes Nicky , Sherwood Chet C. , Wright Katharine , de Manuel Marc , Guevara Elaine E. , Marques-Bonet Tomas , Krützen Michael , Massiah Michael , Hopkins William D. , Ely John J. , Bradley Brenda J. 
Published: November 2017

AbstractThe gene coding for the forkhead box protein P2 (FOXP2) is associated with human language disorders. Evolutionary changes in this gene are hypothesized to have contributed to the emergence of speech and language in the human lineage. Although FOXP2 is highly conserved across most mammals, humans differ at two functional amino acid substitutions from chimpanzees, bonobos and gorillas, with an additional fixed substitution found in orangutans. However, FOXP2 has been characterized in only a small number of apes and no publication to date has examined the degree of natural variation in large samples of unrelated great apes. Here, we analyzed the genetic variation in the FOXP2 coding sequence in 63 chimpanzees, 11 bonobos, 48 gorillas, 37 orangutans and 2 gibbons and observed undescribed variation in great apes. We identified two variable polyglutamine microsatellites in chimpanzees and orangutans and found three nonsynonymous single nucleotide polymorphisms, one in chimpanzees, one in gorillas and one in orangutans with derived allele frequencies of 0.01, 0.26 and 0.29, respectively. Structural and functional protein modeling indicate a biochemical effect of the substitution in orangutans, and because of its presence solely in the Sumatran orangutan species, the mutation may be associated with reported population differences in vocalizations.
Germanium-doped Metallic Ohmic Contacts in Black Phosphorus Field-Effect Transistors with Ultra-low Contact Resistance
Authors: Chang Hsun-Ming , Charnas Adam , Lin Yu-Ming , Ye Peide D. , Wu Chih-I , Wu Chao-Hsin 
Published: November 2017

AbstractIn this work, we demonstrate for the first time an ultra-low contact resistance few-layered black phosphorus (BP) transistor with metallic PGex contacts formed by rapid thermal annealing (RTA). The on-state current of the transistor can be significantly improved and the ION/IOFF ratio increases by almost 2 order. The hole mobility is enhanced by 25 times to 227 cm2V−1s−1. The contact resistance extracted by the transfer length method is 0.365 kΩ∙μm, which is the lowest value in black phosphorus transistors without degradation of ION/IOFF ratio. In addition, the I-V curve of the transistor with PGex contact is linear compared to that with Ti contact at 80 K, indicating that a metallic ohmic contact is successfully formed. Finally, X-ray photoelectron spectroscopy is used to characterize the PGex compound. A signal of P-Ge bond is first observed, further verifying the doping of Ge into BP and the formation of the PGex alloy.
Constraints from the dehydration of antigorite on high-conductivity anomalies in subduction zones
Authors: Wang Duojun , Liu Xiaowei , Liu Tao , Shen Kewei , Welch David O. , Li Baosheng 
Published: November 2017

AbstractRegions with high electrical conductivities in subduction zones have attracted a great deal of attention. Determining the exact origin of these anomalies could provide critical information about the water storage and cycling processes during subduction. Antigorite is the most important hydrous mineral within deep subduction zones. The dehydration of antigorite is believed to cause high-conductivity anomalies. To date, the effects of dehydration on the electrical conductivity of antigorite remain poorly understood. Here, we report new measurements of the electrical conductivity of both natural and hot-pressed antigorite at pressures of 4 and 3 GPa, respectively, and at temperatures reaching 1073 K. We observed significantly enhanced conductivities when the antigorite was heated to temperatures beyond its thermodynamic stability field. Sharp increases in the electrical conductivity occurred at approximately 848 and 898 K following the decomposition of antigorite to forsterite, enstatite and aqueous fluids. High electrical conductivities reaching 1 S/m can be explained by the presence of an interconnected network of conductive aqueous fluids. Based on these results for the electrical conductivity of antigorite, we conclude that high-conductivity regions associated with subduction zones can be attributed to dehydration-induced fluids and the formation of interconnected networks of aqueous fluids during the dehydration of antigorite.
A genomic perspective of the pink-headed duck Rhodonessa caryophyllacea suggests a long history of low effective population size
Authors: Ericson Per G. P. , Qu Yanhua , Blom Mozes P. K. , Johansson Ulf S. , Irestedt Martin 
Published: November 2017

AbstractThe first molecular phylogenetic hypothesis for the possibly extinct pink-headed duck Rhodonessa caryophyllacea unambiguously shows that it belongs to the pochard radiation that also includes the genera Aythya and Netta. It is the sister to all modern-day pochards and belongs to a lineage that branched off from the others more than 2.8 million years ago. Rhodonessa caryophyllacea is believed to never have been common in modern time and we show this has probably been the situation for as long as 100,000 years. Our results suggest that their effective population size varied between 15,000 and 25,000 individuals during the last 150,000 years of the Pleistocene. The reasons behind this are largely unknown as very little is known about the life-history and biology of this species. Presumably it is due to factors related to feeding or to breeding, but we may never know this for sure.
Localized solutions of Lugiato-Lefever equations with focused pump
Authors: Cardoso Wesley B. , Salasnich Luca , Malomed Boris A. 
Published: November 2017

AbstractLugiato-Lefever (LL) equations in one and two dimensions (1D and 2D) accurately describe the dynamics of optical fields in pumped lossy cavities with the intrinsic Kerr nonlinearity. The external pump is usually assumed to be uniform, but it can be made tightly focused too–in particular, for building small pixels. We obtain solutions of the LL equations, with both the focusing and defocusing intrinsic nonlinearity, for 1D and 2D confined modes supported by the localized pump. In the 1D setting, we first develop a simple perturbation theory, based in the sechansatz, in the case of weak pump and loss. Then, a family of exact analytical solutions for spatially confined modes is produced for the pump focused in the form of a delta-function, with a nonlinear loss (two-photon absorption) added to the LL model. Numerical findings demonstrate that these exact solutions are stable, both dynamically and structurally (the latter means that stable numerical solutions close to the exact ones are found when a specific condition, necessary for the existence of the analytical solution, does not hold). In 2D, vast families of stable confined modes are produced by means of a variational approximation and full numerical simulations.
Essential involvement of the CX3CL1-CX3CR1 axis in bleomycin-induced pulmonary fibrosis via regulation of fibrocyte and M2 macrophage migration
Authors: Ishida Yuko , Kimura Akihiko , Nosaka Mizuho , Kuninaka Yumi , Hemmi Hiroaki , Sasaki Izumi , Kaisho Tsuneyasu , Mukaida Naofumi , Kondo Toshikazu 
Published: November 2017

AbstractThe potential role of macrophages in pulmonary fibrosis (PF) prompted us to evaluate the roles of CX3CR1, a chemokine receptor abundantly expressed in macrophages during bleomycin (BLM)-induced PF. Intratracheal BLM injection induced infiltration of leukocytes such as macrophages into the lungs, which eventually resulted in fibrosis. CX3CR1 expression was mainly detected in the majority of macrophages and in a small portion of α-smooth muscle actin-positive cells in the lungs, while CX3CL1 was expressed in macrophages. BLM-induced fibrotic changes in the lungs were reduced without any changes in the number of leukocytes in Cx3cr1−/− mice, as compared with those in the wild-type (WT) mice. However, intrapulmonary CX3CR1+ macrophages displayed pro-fibrotic M2 phenotypes; lack of CX3CR1 skewed their phenotypes toward M1 in BLM-challenged lungs. Moreover, fibrocytes expressed CX3CR1, and were increased in BLM-challenged WT lungs. The number of intrapulmonary fibrocytes was decreased in Cx3cr1−/− mice. Thus, locally-produced CX3CL1 can promote PF development primarily by attracting CX3CR1-expressing M2 macrophages and fibrocytes into the lungs.
Spatial blurring in laser speckle imaging in inhomogeneous turbid media
Authors: Vitomir Luka , Sprakel Joris , van der Gucht Jasper 
Published: November 2017

AbstractLaser speckle imaging (LSI) has developed into a versatile tool to image dynamical processes in turbid media, such as subcutaneous blood perfusion and heterogeneous dynamics in soft materials. Spatially resolved information about local dynamics is obtained by measuring time-dependent correlation functions of multiply scattered light. Due to the diffusive nature of photons in highly scattering media, the measured signal is a convolution of the local dynamics in the material and the spatial distribution of photons. This spatial averaging inevitably leads to a loss of resolution, which must be taken into account for a correct interpretation of LSI measurements. In this paper we derive analytical expressions to quantify the effects of spatial blurring in backscatter LSI for materials with heterogeneous dynamics. Using the diffusion approximation, we calculate the photon density distribution for a semi-infinite material, and we predict the effect of dynamic heterogeneity on the measured correlation function. We verify our theoretical expressions using random walk simulations. Our results show that LSI measurements in dynamically heterogeneous materials should be interpreted with caution, especially when only a single wavelength and correlation time are used to obtain the dynamical map.
The individual environment, not the family is the most important influence on preferences for common non-alcoholic beverages in adolescence
Authors: Smith Andrea D. , Fildes Alison , Forwood Suzanna , Cooke Lucy , Llewellyn Clare 
Published: November 2017

AbstractBeverage preferences are an important driver of consumption, and strong liking for beverages high in energy (e.g. sugar-sweetened beverages [SSBs]) and dislike for beverages low in energy (e.g. non-nutritive sweetened beverages [NNSBs]) are potentially modifiable risk factors contributing to variation in intake. Twin studies have established that both genes and environment play important roles in shaping food preferences; but the aetiology of variation in non-alcoholic beverage preferences is unknown. 2865 adolescent twins (18–19-years old) from the Twins Early Development Study were used to quantify genetic and environmental influence on variation in liking for seven non-alcoholic beverages: SSBs; NNSBs; fruit cordials, orange juice, milk, coffee, and tea. Maximum Likelihood Structural Equation Modelling established that beverage preferences have a moderate to low genetic basis; from 18% (95% CI: 10%, 25%) for orange juice to 42% (36%, 43%) for fruit cordials. Aspects of the environment that are not shared by twin pairs explained all remaining variance in drink preferences. The sizeable unique environmental influence on beverage preferences highlights the potential for environmental modification. Policies and guidelines to change preferences for unhealthy beverages may therefore be best directed at the wider environment.
The Posterior Insula Shows Disrupted Brain Functional Connectivity in Female Migraineurs Without Aura Based on Brainnetome Atlas
Authors: Zhang Jilei , Su Jingjing , Wang Mengxing , Zhao Ying , Zhang Qi-Ting , Yao Qian , Lu Haifeng , Zhang Hui , Li Ge-Fei , Wu Yi-Lan , Liu Yi-Sheng , Liu Feng-Di , Zhuang Mei-Ting , Shi Yan-Hui , Hou Tian-Yu , Zhao Rong , Qiao Yuan , Li Jianqi , Liu Jian-Ren , Du Xiaoxia 
Published: November 2017

AbstractLong-term headache attacks may cause human brain network reorganization in patients with migraine. In the current study, we calculated the topologic properties of functional networks based on the Brainnetome atlas using graph theory analysis in 29 female migraineurs without aura (MWoA) and in 29 female age-matched healthy controls. Compared with controls, female MWoA exhibited that the network properties altered, and the nodal centralities decreased/increased in some brain areas. In particular, the right posterior insula and the left medial superior occipital gyrus of patients exhibited significantly decreased nodal centrality compared with healthy controls. Furthermore, female MWoA exhibited a disrupted functional network, and notably, the two sub-regions of the right posterior insula exhibited decreased functional connectivity with many other brain regions. The topological metrics of functional networks in female MWoA included alterations in the nodal centrality of brain regions and disrupted connections between pair regions primarily involved in the discrimination of sensory features of pain, pain modulation or processing and sensory integration processing. In addition, the posterior insula decreased the nodal centrality, and exhibited disrupted connectivity with many other brain areas in female migraineurs, which suggests that the posterior insula plays an important role in female migraine pathology.
Purification and functional comparison of nine human Aquaporins produced in Saccharomyces cerevisiae for the purpose of biophysical characterization
Authors: Bjørkskov Frederik Bühring , Krabbe Simon Lyngaa , Nurup Casper Normann , Missel Julie Winkel , Spulber Mariana , Bomholt Julie , Molbaek Karen , Helix-Nielsen Claus , Gotfryd Kamil , Gourdon Pontus , Pedersen Per Amstrup 
Published: November 2017

AbstractThe sparse number of high-resolution human membrane protein structures severely restricts our comprehension of molecular physiology and ability to exploit rational drug design. In the search for a standardized, cheap and easily handled human membrane protein production platform, we thoroughly investigated the capacity of S. cerevisiae to deliver high yields of prime quality human AQPs, focusing on poorly characterized members including some previously shown to be difficult to isolate. Exploiting GFP labeled forms we comprehensively optimized production and purification procedures resulting in satisfactory yields of all nine AQP targets. We applied the obtained knowledge to successfully upscale purification of histidine tagged human AQP10 produced in large bioreactors. Glycosylation analysis revealed that AQP7 and 12 were O-glycosylated, AQP10 was N-glycosylated while the other AQPs were not glycosylated. We furthermore performed functional characterization and found that AQP 2, 6 and 8 allowed flux of water whereas AQP3, 7, 9, 10, 11 and 12 also facilitated a glycerol flux. In conclusion, our S. cerevisiae platform emerges as a powerful tool for isolation of functional, difficult-to-express human membrane proteins suitable for biophysical characterization.
Enhancement of eruption explosivity by heterogeneous bubble nucleation triggered by magma mingling
Authors: Paredes-Mariño Joali , Dobson Katherine J. , Ortenzi Gianluigi , Kueppers Ulrich , Morgavi Daniele , Petrelli Maurizio , Hess Kai-Uwe , Laeger Kathrin , Porreca Massimiliano , Pimentel Adriano , Perugini Diego 
Published: November 2017

AbstractWe present new evidence that shows magma mingling can be a key process during highly explosive eruptions. Using fractal analysis of the size distribution of trachybasaltic fragments found on the inner walls of bubbles in trachytic pumices, we show that the more mafic component underwent fracturing during quenching against the trachyte. We propose a new mechanism for how this magmatic interaction at depth triggered rapid heterogeneous bubble nucleation and growth and could have enhanced eruption explosivity. We argue that the data support a further, and hitherto unreported contribution of magma mingling to highly explosive eruptions. This has implications for hazard assessment for those volcanoes in which evidence of magma mingling exists.
Role of ventral medullary catecholaminergic neurons for respiratory modulation of sympathetic outflow in rats
Authors: Moraes Davi J. A. , Bonagamba Leni G. H. , da Silva Melina P. , Paton Julian F. R. , Machado Benedito H. 
Published: November 2017

AbstractSympathetic activity displays rhythmic oscillations generated by brainstem inspiratory and expiratory neurons. Amplification of these rhythmic respiratory-related oscillations is observed in rats under enhanced central respiratory drive or during development of neurogenic hypertension. Herein, we evaluated the involvement of ventral medullary sympatho-excitatory catecholaminergic C1 neurons, using inhibitory Drosophila allatostatin receptors, for the enhanced expiratory-related oscillations in sympathetic activity in rats submitted to chronic intermittent hypoxia (CIH) and following activation of both peripheral (hypoxia) and central chemoreceptors (hypercapnia). Pharmacogenetic inhibition of C1 neurons bilaterally resulted in reductions of their firing frequency and amplitude of inspiratory-related sympathetic activity in rats in normocapnia, hypercapnia or after CIH. In contrast, hypercapnia or hypoxia-induced enhanced expiratory-related sympathetic oscillations were unaffected by C1 neuronal inhibition. Inhibition of C1 neurons also resulted in a significant fall in arterial pressure and heart rate that was similar in magnitude between normotensive and CIH hypertensive rats, but basal arterial pressure in CIH rats remained higher compared to controls. C1 neurons play a key role in regulating inspiratory modulation of sympathetic activity and arterial pressure in both normotensive and CIH hypertensive rats, but they are not involved in the enhanced late-expiratory-related sympathetic activity triggered by activation of peripheral or central chemoreceptors.