bluuebunny/crossref_metadata_2025_split huggingface dataset:
Lubricity of gold nanocrystals on graphene measured using quartz crystal microbalance
Authors: Lodge M. S. , Tang C. , Blue B. T. , Hubbard W. A. , Martini A. , Dawson B. D. , Ishigami M. 
Published: August 2016

AbstractIn order to test recently predicted ballistic nanofriction (ultra-low drag and enhanced lubricity) of gold nanocrystals on graphite at high surface speeds, we use the quartz microbalance technique to measure the impact of deposition of gold nanocrystals on graphene. We analyze our measurements of changes in frequency and dissipation induced by nanocrystals using a framework developed for friction of adatoms on various surfaces. We find the lubricity of gold nanocrystals on graphene to be even higher than that predicted for the ballistic nanofriction, confirming the enhanced lubricity predicted at high surface speeds. Our complementary molecular dynamics simulations indicate that such high lubricity is due to the interaction strength between gold nanocrystals and graphene being lower than previously assumed for gold nanocrystals and graphite.
Molecular chaperone Hsp27 regulates the Hippo tumor suppressor pathway in cancer
Authors: Vahid Sepideh , Thaper Daksh , Gibson Kate F. , Bishop Jennifer L. , Zoubeidi Amina 
Published: August 2016

AbstractHeat shock protein 27 (Hsp27) is a molecular chaperone highly expressed in aggressive cancers, where it is involved in numerous pro-tumorigenic signaling pathways. Using functional genomics we identified for the first time that Hsp27 regulates the gene signature of transcriptional co-activators YAP and TAZ, which are negatively regulated by the Hippo Tumor Suppressor pathway. The Hippo pathway inactivates YAP by phosphorylating and increasing its cytoplasmic retention with the 14.3.3 proteins. Gain and loss of function experiments in prostate, breast and lung cancer cells showed that Hsp27 knockdown induced YAP phosphorylation and cytoplasmic localization while overexpression of Hsp27 displayed opposite results. Mechanistically, Hsp27 regulates the Hippo pathway by accelerating the proteasomal degradation of ubiquitinated MST1, the core Hippo kinase, resulting in reduced phosphorylation/activity of LATS1 and MOB1, its downstream effectors. Importantly, our in vitro results were supported by data from human tumors; clinically, high expression of Hsp27 in prostate tumors is correlated with increased expression of YAP gene signature and reduced phosphorylation of YAP in lung and invasive breast cancer clinical samples. This study reveals for the first time a link between Hsp27 and the Hippo cascade, providing a novel mechanism of deregulation of this tumor suppressor pathway across multiple cancers.
Sorbent track: Quantitative monitoring of adsorbed VOCs under in-situ plasma exposure
Authors: Jia Zixian , Rousseau Antoine 
Published: August 2016

AbstractSorbent-TRACK is a new device developed to monitor adsorption and surface oxidation of pollutants under direct plasma exposure. It is based on direct transmitted Fourier Transformed Infrared (FTIR) spectroscopy. A pyrex reactor under controlled gas pressure and composition is inserted on the infrared beam of a commercially available Nicolet 5700 FTIR spectrometer. A substrate holder is located on the optical path of the infrared beam. A thin pellet of a dedicated catalyst (CeO2 in the present work) is inserted in a substrate holder and can be exposed to direct plasma treatment using a Dielectric Barrier Discharge. The time resolution of Sorbent-TRACK is limited by the time resolution of the Nicolet 5700 FTIR spectrometer and close to 30 s. The dynamic of the adsorption and plasma oxidation of acetone and isopropanol on CeO2 are studied and intermediates are monitored. Performances and sensitivity of Sorbent-TRACK are reported Adsorption and oxidation of acetone leads to production of adsorbed isobutene and acetic acid, where oxidation of isopropanol gives mainly to adsorbed acetone, mesityl oxide and acetate. An increase of the plasma power leads to an increase of the isopropanol and acetone oxidation rate and a related increase of the production of adsorbed intermediates.
Charge density waves in disordered media circumventing the Imry-Ma argument
Authors: Changlani Hitesh J. , Tubman Norm M. , Hughes Taylor L. 
Published: August 2016

AbstractTwo powerful theoretical predictions, Anderson localization and the Imry-Ma argument, impose significant restrictions on the phases of matter that can exist in the presence of even the smallest amount of disorder in one-dimensional systems. These predictions forbid electrically conducting states and ordered states respectively. It was thus remarkable that a mechanism to circumvent Anderson localization relying on the presence of correlated disorder was found, that is also realized in certain biomolecular systems. In a similar manner, we show that the Imry-Ma argument can be circumvented, resulting in the formation of stable ordered states with discrete broken symmetries in disordered one dimensional systems. We then investigate other mechanisms by which disorder can destroy an ordered state.
Stochastic modeling of biochemical systems with multistep reactions using state-dependent time delay
Authors: Wu Qianqian , Tian Tianhai 
Published: August 2016

AbstractTo deal with the growing scale of molecular systems, sophisticated modelling techniques have been designed in recent years to reduce the complexity of mathematical models. Among them, a widely used approach is delayed reaction for simplifying multistep reactions. However, recent research results suggest that a delayed reaction with constant time delay is unable to describe multistep reactions accurately. To address this issue, we propose a novel approach using state-dependent time delay to approximate multistep reactions. We first use stochastic simulations to calculate time delay arising from multistep reactions exactly. Then we design algorithms to calculate time delay based on system dynamics precisely. To demonstrate the power of proposed method, two processes of mRNA degradation are used to investigate the function of time delay in determining system dynamics. In addition, a multistep pathway of metabolic synthesis is used to explore the potential of the proposed method to simplify multistep reactions with nonlinear reaction rates. Simulation results suggest that the state-dependent time delay is a promising and accurate approach to reduce model complexity and decrease the number of unknown parameters in the models.
From greening to browning: Catchment vegetation development and reduced S-deposition promote organic carbon load on decadal time scales in Nordic lakes
Authors: Finstad Anders G. , Andersen Tom , Larsen Søren , Tominaga Koji , Blumentrath Stefan , de Wit Heleen A. , Tømmervik Hans , Hessen Dag Olav 
Published: August 2016

AbstractIncreased concentrations of dissolved organic carbon (DOC), often labelled “browning”, is a current trend in northern, particularly boreal, freshwaters. The browning has been attributed to the recent reduction in sulphate (S) deposition during the last 2 to 3 decades. Over the last century, climate and land use change have also caused an increasing trend in vegetation cover (“greening”) and this terrestrially fixed carbon represents another potential source for export of organic carbon to lakes and rivers. The impact of this greening on the observed browning of lakes and rivers on decadal time scales remains poorly investigated, however. Here, we explore time-series both on water chemistry and catchment vegetation cover (using NDVI as proxy) from 70 Norwegian lakes and catchments over a 30-year period. We show that the increase in terrestrial vegetation as well as temperature and runoff significantly adds to the reduced SO4-deposition as a driver of freshwater DOC concentration. Over extended periods (centuries), climate mediated changes in vegetation cover may cause major browning of northern surface waters, with severe impact on ecosystem productivity and functioning.
Improved Compressive Sensing of Natural Scenes Using Localized Random Sampling
Authors: Barranca Victor J. , Kovačič Gregor , Zhou Douglas , Cai David 
Published: August 2016

AbstractCompressive sensing (CS) theory demonstrates that by using uniformly-random sampling, rather than uniformly-spaced sampling, higher quality image reconstructions are often achievable. Considering that the structure of sampling protocols has such a profound impact on the quality of image reconstructions, we formulate a new sampling scheme motivated by physiological receptive field structure, localized random sampling, which yields significantly improved CS image reconstructions. For each set of localized image measurements, our sampling method first randomly selects an image pixel and then measures its nearby pixels with probability depending on their distance from the initially selected pixel. We compare the uniformly-random and localized random sampling methods over a large space of sampling parameters, and show that, for the optimal parameter choices, higher quality image reconstructions can be consistently obtained by using localized random sampling. In addition, we argue that the localized random CS optimal parameter choice is stable with respect to diverse natural images, and scales with the number of samples used for reconstruction. We expect that the localized random sampling protocol helps to explain the evolutionarily advantageous nature of receptive field structure in visual systems and suggests several future research areas in CS theory and its application to brain imaging.
Low voltage-driven oxide phototransistors with fast recovery, high signal-to-noise ratio, and high responsivity fabricated via a simple defect-generating process
Authors: Yun Myeong Gu , Kim Ye Kyun , Ahn Cheol Hyoun , Cho Sung Woon , Kang Won Jun , Cho Hyung Koun , Kim Yong-Hoon 
Published: August 2016

AbstractWe have demonstrated that photo-thin film transistors (photo-TFTs) fabricated via a simple defect-generating process could achieve fast recovery, a high signal to noise (S/N) ratio, and high sensitivity. The photo-TFTs are inverted-staggered bottom-gate type indium-gallium-zinc-oxide (IGZO) TFTs fabricated using atomic layer deposition (ALD)-derived Al2O3 gate insulators. The surfaces of the Al2O3 gate insulators are damaged by ion bombardment during the deposition of the IGZO channel layers by sputtering and the damage results in the hysteresis behavior of the photo-TFTs. The hysteresis loops broaden as the deposition power density increases. This implies that we can easily control the amount of the interface trap sites and/or trap sites in the gate insulator near the interface. The photo-TFTs with large hysteresis-related defects have high S/N ratio and fast recovery in spite of the low operation voltages including a drain voltage of 1 V, positive gate bias pulse voltage of 3 V, and gate voltage pulse width of 3 V (0 to 3 V). In addition, through the hysteresis-related defect-generating process, we have achieved a high responsivity since the bulk defects that can be photo-excited and eject electrons also increase with increasing deposition power density.
Electronic structures and enhanced optical properties of blue phosphorene/transition metal dichalcogenides van der Waals heterostructures
Authors: Peng Qiong , Wang Zhenyu , Sa Baisheng , Wu Bo , Sun Zhimei 
Published: August 2016

AbstractAs a fast emerging topic, van der Waals (vdW) heterostructures have been proposed to modify two-dimensional layered materials with desired properties, thus greatly extending the applications of these materials. In this work, the stacking characteristics, electronic structures, band edge alignments, charge density distributions and optical properties of blue phosphorene/transition metal dichalcogenides (BlueP/TMDs) vdW heterostructures were systematically studied based on vdW corrected density functional theory. Interestingly, the valence band maximum and conduction band minimum are located in different parts of BlueP/MoSe2, BlueP/WS2 and BlueP/WSe2 heterostructures. The MoSe2, WS2 or WSe2 layer can be used as the electron donor and the BlueP layer can be used as the electron acceptor. We further found that the optical properties under visible-light irradiation of BlueP/TMDs vdW heterostructures are significantly improved. In particular, the predicted upper limit energy conversion efficiencies of BlueP/MoS2 and BlueP/MoSe2 heterostructures reach as large as 1.16% and 0.98%, respectively, suggesting their potential applications in efficient thin-film solar cells and optoelectronic devices.
Hydrogen Generation using non-polar coaxial InGaN/GaN Multiple Quantum Well Structure Formed on Hollow n-GaN Nanowires
Authors: Park Ji-Hyeon , Mandal Arjun , Kang San , Chatterjee Uddipta , Kim Jin Soo , Park Byung-Guon , Kim Moon-Deock , Jeong Kwang-Un , Lee Cheul-Ro 
Published: August 2016

AbstractThis article demonstrates for the first time to the best of our knowledge, the merits of InGaN/GaN multiple quantum wells (MQWs) grown on hollow n-GaN nanowires (NWs) as a plausible alternative for stable photoelectrochemical water splitting and efficient hydrogen generation. These hollow nanowires are achieved by a growth method rather not by conventional etching process. Therefore this approach becomes simplistic yet most effective. We believe relatively low Ga flux during the selective area growth (SAG) aids the hollow nanowire to grow. To compare the optoelectronic properties, simultaneously solid nanowires are also studied. In this present communication, we exhibit that lower thermal conductivity of hollow n-GaN NWs affects the material quality of InGaN/GaN MQWs by limiting In diffusion. As a result of this improvement in material quality and structural properties, photocurrent and photosensitivity are enhanced compared to the structures grown on solid n-GaN NWs. An incident photon-to-current efficiency (IPCE) of around ~33.3% is recorded at 365 nm wavelength for hollow NWs. We believe that multiple reflections of incident light inside the hollow n-GaN NWs assists in producing a larger amount of electron hole pairs in the active region. As a result the rate of hydrogen generation is also increased.
Sub-2 nm Thick Fluoroalkylsilane Self-Assembled Monolayer-Coated High Voltage Spinel Crystals as Promising Cathode Materials for Lithium Ion Batteries
Authors: Zettsu Nobuyuki , Kida Satoru , Uchida Shuhei , Teshima Katsuya 
Published: August 2016

AbstractWe demonstrate herein that an ultra-thin fluoroalkylsilane self-assembled monolayer coating can be used as a modifying agent at LiNi0.5Mn1.5O4−δcathode/electrolyte interfaces in 5V-class lithium-ion batteries. Bare LiNi0.5Mn1.5O4−δ cathode showed substantial capacity fading, with capacity dropping to 79% of the original capacity after 100 cycles at a rate of 1C, which was entirely due to dissolution of Mn3+ from the spinel lattice via oxidative decomposition of the organic electrolyte. Capacity retention was improved to 97% on coating ultra-thin FAS17-SAM onto the LiNi0.5Mn1.5O4 cathode surface. Such surface protection with highly ordered fluoroalkyl chains insulated the cathode from direct contact with the organic electrolyte and led to increased tolerance to HF.
Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function
Authors: Chen Jianqing , Jing Yinghui , Zhang Xinyue , Li Leiting , Wang Peng , Zhang Shaoling , Zhou Hongsheng , Wu Juyou 
Published: August 2016

AbstractGlutamate-like receptors (GLRs) is a highly conserved family of ligand-gated ion channels, which have been associated with various physiological and developmental processes. Here, we investigated the evolutionary pattern of GLRs in plants. We observed that tandem duplications occupied the largest proportion of the plant GLR gene family expansion. Based on a phylogenetic tree, we suggested a new subfamily, GLR4, which is widespread in angiosperm but absence on Brassicales. Meanwhile, because GLR1 and GLR2 subfamilies were potential sister clades, we combined them into the GLR1&2 subfamily. A comparative analysis of plant GLR subfamilies revealed that selective forces shaped the GLR1&2 repertoires in the stems of eudicotyledons with distinct functional preferences. Moreover, GLR1&2 formed a species-specific highwoody-expanded subfamily, with preferential expression in the cambial-enriched and shoot apical meristem fractions of the highwood species. Together, these findings lay the foundation for evolutionary analysis of plant GLRs over the entire plant timescale and identified unique targets for manipulating the woody-growth behaviours of plant GLRs.
Blockage of Galectin-receptor Interactions by α-lactose Exacerbates Plasmodium berghei-induced Pulmonary Immunopathology
Authors: Liu Jinfeng , Huang Shiguang , Su Xin-zhuan , Song Jianping , Lu Fangli 
Published: August 2016

AbstractMalaria-associated acute lung injury (ALI) is a frequent complication of severe malaria that is often caused by “excessive” immune responses. To better understand the mechanism of ALI in malaria infection, here we investigated the roles of galectin (Gal)-1, 3, 8, 9 and the receptors of Gal-9 (Tim-3, CD44, CD137, and PDI) in malaria-induced ALI. We injected alpha (α)-lactose into mice-infected with Plasmodium berghei ANKA (PbANKA) to block galectins and found significantly elevated total proteins in bronchoalveolar lavage fluid, higher parasitemia and tissue parasite burden, and increased numbers of CD68+ alveolar macrophages as well as apoptotic cells in the lungs after blockage. Additionally, mRNA levels of Gal-9, Tim-3, CD44, CD137, and PDI were significantly increased in the lungs at day 5 after infection, and the levels of CD137, IFN-α, IFN-β, IFN-γ, IL-4, and IL-10 in the lungs were also increased after α-lactose treatment. Similarly, the levels of Gal-9, Tim-3, IFN-α, IFN-β, IFN-γ, and IL-10 were all significantly increased in murine peritoneal macrophages co-cultured with PbANKA-infected red blood cells in vitro; but only IFN-α and IFN-β were significantly increased after α-lactose treatment. Our data indicate that Gal-9 interaction with its multiple receptors play an important role in murine malaria-associated ALI.
Neural stem cells secrete factors facilitating brain regeneration upon constitutive Raf-Erk activation
Authors: Rhee Yong-Hee , Yi Sang-Hoon , Kim Joo Yeon , Chang Mi-Yoon , Jo A-Young , Kim Jinyoung , Park Chang-Hwan , Cho Je-Yoel , Choi Young-Jin , Sun Woong , Lee Sang-Hun 
Published: August 2016

AbstractThe intracellular Raf-Erk signaling pathway is activated during neural stem cell (NSC) proliferation, and neuronal and astrocytic differentiation. A key question is how this signal can evoke multiple and even opposing NSC behaviors. We show here, using a constitutively active Raf (ca-Raf), that Raf-Erk activation in NSCs induces neuronal differentiation in a cell-autonomous manner. By contrast, it causes NSC proliferation and the formation of astrocytes in an extrinsic autocrine/paracrine manner. Thus, treatment of NSCs with medium (CM) conditioned in ca-Raf-transduced NSCs (Raf-CM; RCM) became activated to form proliferating astrocytes resembling radial glial cells (RGCs) or adult-type NSCs. Infusion of Raf-CM into injured mouse brains caused expansion of the NSC population in the subventricular zone, followed by the formation of new neurons that migrated to the damaged site. Our study shows an example how molecular mechanisms dissecting NSC behaviors can be utilized to develop regenerative therapies in brain disorders.
Mangifera sylvatica (Wild Mango): A new cocoa butter alternative
Authors: Akhter Sayma , McDonald Morag A. , Marriott Ray 
Published: August 2016

AbstractCocoa butter is the pure butter extracted from cocoa beans and is a major ingredient in the chocolate industry. Global production of cocoa is in decline due to crop failure, diseases and ageing plantations, leading to price fluctuations and the necessity for the industry to find high quality cocoa butter alternatives. This study explored the potential of a wild mango (Mangifera sylvatica), an underutilised fruit in south-east Asia, as a new Cocoa Butter Alternative (CBA). Analyses showed that wild mango butter has a light coloured fat with a similar fatty acid profile (palmitic, stearic and oleic acid) and triglyceride profile (POP, SOS and POS) to cocoa butter. Thermal and physical properties are also similar to cocoa butter. Additionally, wild mango butter comprises 65% SOS (1, 3-distearoyl-2-oleoyl-glycerol) which indicates potential to become a Cocoa Butter Improver (an enhancement of CBA). It is concluded that these attractive properties of wild mango could be prompted by a coalition of policy makers, foresters, food industries and horticulturists to promote more widespread cultivation of this wild fruit species to realise the market opportunity.
Entanglement transfer from two-mode continuous variable SU(2) cat states to discrete qubits systems in Jaynes-Cummings Dimers
Authors: Ran Du , Hu Chang-Sheng , Yang Zhen-Biao 
Published: August 2016

AbstractWe study the entanglement transfer from a two-mode continuous variable system (initially in the two-mode SU(2) cat states) to a couple of discrete two-state systems (initially in an arbitrary mixed state), by use of the resonant Jaynes-Cummings (JC) interaction. We first quantitatively connect the entanglement transfer to non-Gaussianity of the two-mode SU(2) cat states and find a positive correlation between them. We then investigate the behaviors of the entanglement transfer and find that it is dependent on the initial state of the discrete systems. We also find that the largest possible value of the transferred entanglement exhibits a variety of behaviors for different photon number as well as for the phase angle of the two-mode SU(2) cat states. We finally consider the influences of the noise on the transferred entanglement.
Noncoding RNA-regulated gain-of-function of STOX2 in Finnish pre-eclamptic families
Authors: Oudejans Cees BM , Poutsma Ankie , Michel Omar J. , Thulluru Hari K. , Mulders Joyce , van de Vrugt Henri J. , Sistermans Erik A. , van Dijk Marie 
Published: August 2016

AbstractThe familial forms of early onset pre-eclampsia and related syndromes (HELLP) present with hypertension and proteinuria in the mother and growth restriction of the fetus. Genetically, these clinically similar entities are caused by different founder-dependent, placentally-expressed paralogous genes. All susceptibility genes (STOX1, lincHELLP, INO80B) identified so far are master control genes that regulate an essential trophoblast differentiation pathway, but act at different entry points. Many genes remain to be identified. Here we demonstrate that a long non-coding RNA (lncRNA) within intron 3 of the STOX2 gene on 4q35.1 acts as a permissive cis-acting regulator of alternative splicing of STOX2. When this lncRNA is mutated or absent, an alternative exon (3B) of STOX2 is included. This introduces a stop codon resulting in the deletion of a highly conserved domain of 64 amino acids in the C-terminal of the STOX2 protein. A mutation present within a regulatory region within intron 1 of STOX2 has the same effect after blocking with CRISPR technology: transcripts with exon 3B are upregulated. This proces appears related to transcriptional control by a chromatin-splicing adaptor complex as described for FGFR2. For STOX2, CHD5, coding for a chromodomain helicase DNA binding protein, qualifies as the chromatin modifier in this process.