bluuebunny/crossref_metadata_2025_split huggingface dataset:
Enstrophy transport conditional on local flow topologies in different regimes of premixed turbulent combustion
Authors: Papapostolou Vassilios , Wacks Daniel H. , Chakraborty Nilanjan , Klein Markus , Im Hong G. 
Published: September 2017

AbstractEnstrophy is an intrinsic feature of turbulent flows, and its transport properties are essential for the understanding of premixed flame-turbulence interaction. The interrelation between the enstrophy transport and flow topologies, which can be assigned to eight categories based on the three invariants of the velocity-gradient tensor, has been analysed here. The enstrophy transport conditional on flow topologies in turbulent premixed flames has been analysed using a Direct Numerical Simulation database representing the corrugated flamelets (CF), thin reaction zones (TRZ) and broken reaction zones (BRZ) combustion regimes. The flame in the CF regime exhibits considerable flame-generated enstrophy, and the dilatation rate and baroclinic torque contributions to the enstrophy transport act as leading order sink and source terms, respectively. Consequently, flow topologies associated with positive dilatation rate values, contribute significantly to the enstrophy transport in the CF regime. By contrast, enstrophy decreases from the unburned to the burned gas side for the cases representing the TRZ and BRZ regimes, with diminishing influences of dilatation rate and baroclinic torque. The enstrophy transport in the TRZ and BRZ regimes is governed by the vortex-stretching and viscous dissipation contributions, similar to non-reacting flows, and topologies existing for all values of dilatation rate remain significant contributors.
The Th1/Th17 balance dictates the fibrosis response in murine radiation-induced lung disease
Authors: Paun Alexandra , Bergeron Marie-Eve , Haston Christina K. 
Published: September 2017

AbstractRadiotherapy can result in lung diseases pneumonitis or fibrosis dependent on patient susceptibility. Herein we used inbred and genetically altered mice to investigate whether the tissue adaptive immune response to radiation injury influences the development of radiation-induced lung disease. Six inbred mouse strains were exposed to 18 Gy whole thorax irradiation and upon respiratory distress strains prone to pneumonitis with fibrosis presented an increased pulmonary frequency of Thelper (Th)17 cells which was not evident in strains prone solely to pneumonitis. The contribution of Th17 cells to fibrosis development was supported as the known enhanced fibrosis of toll-like receptor 2&4 deficient mice, compared to C57BL/6J mice, occurred with earlier onset neutrophilia, and with increased levels of pulmonary Th17, but not Th1, cells following irradiation. Irradiated Il17−/− mice lacked Th17 cells, and were spared both fibrosis and pneumonitis, as they survived to the end of the experiment with a significantly increased pulmonary Th1 cell frequency, only. Interferon-γ−/− mice, deficient in Th1 cells, developed a significantly enhanced fibrosis response compared to that of C57BL/6J mice. The tissue adaptive immune response influences the pulmonary disease response to radiotherapy, as an increased Th17 cell frequency enhanced and a Th1 response spared, fibrosis in mice.
Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita
Authors: Yamazaki Tomokazu , Ichihara Kensuke , Suzuki Ryogo , Oshima Kenshiro , Miyamura Shinichi , Kuwano Kazuyoshi , Toyoda Atsushi , Suzuki Yutaka , Sugano Sumio , Hattori Masahira , Kawano Shigeyuki 
Published: September 2017

AbstractThe evolution of sex chromosomes and mating loci in organisms with UV systems of sex/mating type determination in haploid phases via genes on UV chromosomes is not well understood. We report the structure of the mating type (MT) locus and its evolutionary history in the green seaweed Ulva partita, which is a multicellular organism with an isomorphic haploid-diploid life cycle and mating type determination in the haploid phase. Comprehensive comparison of a total of 12.0 and 16.6 Gb of genomic next-generation sequencing data for mt− and mt+ strains identified highly rearranged MT loci of 1.0 and 1.5 Mb in size and containing 46 and 67 genes, respectively, including 23 gametologs. Molecular evolutionary analyses suggested that the MT loci diverged over a prolonged period in the individual mating types after their establishment in an ancestor. A gene encoding an RWP-RK domain-containing protein was found in the mt− MT locus but was not an ortholog of the chlorophycean mating type determination gene MID. Taken together, our results suggest that the genomic structure and its evolutionary history in the U. partita MT locus are similar to those on other UV chromosomes and that the MT locus genes are quite different from those of Chlorophyceae.
Red and green colors emitting spherical-shaped calcium molybdate nanophosphors for enhanced latent fingerprint detection
Authors: Bharat L. Krishna , Raju G. Seeta Rama , Yu Jae Su 
Published: September 2017

AbstractWe report the synthesis of spherical-shaped rare-earth (Eu3+ and Tb3+) ions doped CaMoO4 nanoparticles in double solvents (IPA and H2O) with the help of autoclave. The X-ray diffraction patterns well match with the standard values and confirm the crystallization in a tetragonal phase with an I41/a (88) space group. The luminescence spectra exhibit the strong red and green emissions from Eu3+ and Tb3+ ions doped samples, respectively. The X-ray photoelectron spectroscopy results show the oxidation states of all the elements present in the sample. The temperature-dependent luminescence spectra reveal the stability of Eu3+ and Tb3+ ions doped samples. The red- and green-emitting Eu3+ and Tb3+ ions doped CaMoO4 samples were used for detection and enhancement of latent fingerprints which are the common evidences found at crime scenes. The enhanced latent fingerprints obtained on different surfaces have high contrast with low background interference. The minute details of the fingerprint which are useful for individualization are clearly observed with the help of these nanopowders.
Food-grade filler particles as an alternative method to modify the texture and stability of myofibrillar gels
Authors: Gravelle Andrew J. , Barbut Shai , Marangoni Alejandro G. 
Published: September 2017

AbstractA series of food grade particles were characterized for their potential as fillers in myofibrillar gels. The fillers were separated into (i) hydrophilic, insoluble, crystalline particles and (ii) starch granules. The particles used were microcrystalline cellulose, oat fiber and walnut shell flour, as well as potato and tapioca starches. Crystalline particles increased hardness and decreased recovery properties. Although all of these fillers decreased the T2 relaxation time of water, this was dependent on particle type and size. An increase in gel strength was observed with increasing filler content, which was attributed to particle crowding. Native potato starch was the most efficient at increasing liquid retention, while native tapioca was the least effective. Gel strength increased significantly only for the native potato and modified tapioca starches, but no effect on recovery attributes were observed for any of the starch varieties. The potato starches became swollen and hydrated to a similar extent during the protein gelation process, while the native tapioca starch gelatinized at higher temperatures, and the modified tapioca showed little evidence of swelling. T2 relaxometry supported this finding, as the meat batters containing native potato starch displayed two water populations, while the remaining starches displayed only a single population.
Physiological activity in calm thermal indoor environments
Authors: Okamoto Tsuyoshi , Tamura Kaori , Miyamoto Naoyuki , Tanaka Shogo , Futaeda Takaharu 
Published: September 2017

AbstractIndoor environmental comfort has previously been quantified based on the subjective assessment of thermal physical parameters, such as temperature, humidity, and airflow velocity. However, the relationship of these parameters to brain activity remains poorly understood. The objective of this study was to determine the effect of airflow on brain activity using electroencephalograms (EEG) of participants in a living environment under different airflow conditions. Before the recording, the room was set to a standardised air temperature and humidity. During the recording, each participant was required to perform a simple time-perception task that involved pressing buttons after estimating a 10-second interval. Cooling and heating experiments were conducted in summer and winter, respectively. A frequency analysis of the EEGs revealed that gamma and beta activities showed lower amplitudes under conditions without airflow than with airflow, regardless of the season (i.e., cooling or heating). Our results reveal new neurophysiological markers of the response to airflow sensation. Further, based on the literature linking gamma and beta waves to less anxious states in calm environments, we suggest that airflow may alter the feelings of the participants.
Precise insertion and guided editing of higher plant genomes using Cpf1 CRISPR nucleases
Authors: Begemann Matthew B. , Gray Benjamin N. , January Emma , Gordon Gina C. , He Yonghua , Liu Haijun , Wu Xingrong , Brutnell Thomas P. , Mockler Todd C. , Oufattole Mohammed 
Published: September 2017

AbstractPrecise genome editing of plants has the potential to reshape global agriculture through the targeted engineering of endogenous pathways or the introduction of new traits. To develop a CRISPR nuclease-based platform that would enable higher efficiencies of precise gene insertion or replacement, we screened the Cpf1 nucleases from Francisella novicida and Lachnospiraceae bacterium ND2006 for their capability to induce targeted gene insertion via homology directed repair. Both nucleases, in the presence of a guide RNA and repairing DNA template flanked by homology DNA fragments to the target site, were demonstrated to generate precise gene insertions as well as indel mutations at the target site in the rice genome. The frequency of targeted insertion for these Cpf1 nucleases, up to 8%, is higher than most other genome editing nucleases, indicative of its effective enzymatic chemistry. Further refinements and broad adoption of the Cpf1 genome editing technology have the potential to make a dramatic impact on plant biotechnology.
Effect of palm-based tocotrienols and tocopherol mixture supplementation on platelet aggregation in subjects with metabolic syndrome: a randomised controlled trial
Authors: Gan Yee-Lin , Fu Ju-Yen , Lai Oi-Ming , Chew Boon-How , Yuen Kah-Hay , Teng Kim-Tiu , Nesaretnam Kalanithi , Selvaduray Kanga Rani , Meganathan Puvaneswari 
Published: September 2017

AbstractTocotrienols, the unsaturated form of vitamin E, were reported to modulate platelet aggregation and thrombotic mechanisms in pre-clinical studies. Using a Food and Drug Administration (FDA)-approved cartridge-based measurement system, a randomised, double-blind, crossover and placebo-controlled trial involving 32 metabolic syndrome adults was conducted to investigate the effect of palm-based tocotrienols and tocopherol (PTT) mixture supplementation on platelet aggregation reactivity. The participants were supplemented with 200 mg (69% tocotrienols and 31% α-tocopherol) twice daily of PTT mixture or placebo capsules for 14 days in a random order. After 14 days, each intervention was accompanied by a postprandial study, in which participants consumed 200 mg PTT mixture or placebo capsule after a meal. Blood samples were collected on day 0, day 14 and during postprandial for the measurement of platelet aggregation reactivity. Subjects went through a 15-day washout period before commencement of subsequent intervention. Fasting platelet aggregation reactivity stimulated with adenosine diphosphate (ADP) did not show substantial changes after supplementation with PTT mixture compared to placebo (p = 0.393). Concomitantly, changes in postprandial platelet aggregation reactivity remained similar between PTT mixture and placebo interventions (p = 0.408). The results of this study highlight the lack of inhibitory effect on platelet aggregation after short-term supplementation of PTT mixture in participants with metabolic syndrome.
Analytical Property of Scattering Matrix:Spectroscopy Phenomena and Sharp Overlapping Autoionization Resonances
Authors: Jin Rui , Han Xiao-Ying , Gao Xiang , Zeng De-ling , Li Jia-Ming 
Published: September 2017

AbstractAn extended atomic data base with sufficiently high precision is required in astrophysics studies and the energy researches. For example, there are “infinite” energy levels in discrete energy region as well as overlapping resonances in autoionization region. We show in this paper the merits of our relativistic eigenchannel R-matrix method R-R-Eigen based on the analytical continuation properties of scattering matrices for the calculations of the energy levels, overlapping resonances and the related transitions. Using Ne+as an illustration example, the scattering matrices of Ne+in both discrete and continuum energy regions are calculated by our R-R-Eigen method directly. Based on our proposed projected high dimensional quantum-defect graph (symmetrized), one can readily determine the accuracies of the calculated scattering matrices using the experimental energy levels in a systematical way. The calculated resonant photoionization cross sections in the autoionization region are in excellent agreement with the benchmark high resolution experiments. With the scattering matrices checked/calibrated against spectroscopy data in both discrete and continuum energy regions, the relevant dynamical processes should be calculated with adequate accuracies. It should then satisfy the needs of the astrophysical and energy researches.
Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis
Authors: Tanifuji Goro , Cenci Ugo , Moog Daniel , Dean Samuel , Nakayama Takuro , David Vojtěch , Fiala Ivan , Curtis Bruce A. , Sibbald Shannon J. , Onodera Naoko T. , Colp Morgan , Flegontov Pavel , Johnson-MacKinnon Jessica , McPhee Michael , Inagaki Yuji , Hashimoto Tetsuo , Kelly Steven , Gull Keith , Lukeš Julius , Archibald John M. 
Published: September 2017

AbstractEndosymbiotic relationships between eukaryotic and prokaryotic cells are common in nature. Endosymbioses between two eukaryotes are also known; cyanobacterium-derived plastids have spread horizontally when one eukaryote assimilated another. A unique instance of a non-photosynthetic, eukaryotic endosymbiont involves members of the genusParamoeba, amoebozoans that infect marine animals such as farmed fish and sea urchins.Paramoebaspecies harbor endosymbionts belonging to the Kinetoplastea, a diverse group of flagellate protists including some that cause devastating diseases. To elucidate the nature of this eukaryote-eukaryote association, we sequenced the genomes and transcriptomes ofParamoeba pemaquidensisand its endosymbiontPerkinselasp. The endosymbiont nuclear genome is ~9.5 Mbp in size, the smallest of a kinetoplastid thus far discovered. Genomic analyses show thatPerkinselasp. has lost the ability to make a flagellum but retains hallmark features of kinetoplastid biology, including polycistronic transcription,trans-splicing, and a glycosome-like organelle. Mosaic biochemical pathways suggest extensive ‘cross-talk’ between the two organisms, and electron microscopy shows that the endosymbiont ingests amoeba cytoplasm, a novel form of endosymbiont-host communication. Our data reveal the cell biological and biochemical basis of the obligate relationship betweenPerkinselasp. and its amoeba host, and provide a foundation for understanding pathogenicity determinants in economically importantParamoeba.
TGF-β1-induced miR-503 controls cell growth and apoptosis by targeting PDCD4 in glioblastoma cells
Authors: Guo Pin , Yu Yanan , Li Huanting , Zhang Daoxiang , Gong Anjing , Li Shifang , Liu Wei , Cheng Lei , Qiu Yongming , Yao Weicheng , Li Luo , Feng Yugong 
Published: September 2017

AbstractAberrant expression of microRNAs hae been shown to be closely associated with glioblastoma cell proliferation, apoptosis and drug resistance. However, mechanisms underlying the role of mcroRNAs in glioblastoma cell growth and apoptosis are not fully understood. In this study, we report that miR-503 is overexpressed in glioblastoma tissue compared with normal human brain tissue. Mechanistically, miR-503 can be induced by TGF-β1 at the transcriptional level by binding the smad2/3 binding elements in the promoter. Ectopic overexpression of miR-503 promotes cell growth and inhibits apoptosis by targeting PDCD4. In contrast, inhibition of miR-503 reduces cell growth. Furthermore, miR-503 inhibitor augments the growth inhibitory effect of temozolomide in glioblastoma cells. These results establish miR-503 as a promising molecular target for glioblastoma therapy.
The association between respiratory tract infection incidence and localised meningitis epidemics: an analysis of high-resolution surveillance data from Burkina Faso
Authors: Mueller Judith E. , Woringer Maxime , Porgho Souleymane , Madec Yoann , Tall Haoua , Martiny Nadège , Bicaba Brice W. 
Published: September 2017

AbstractMeningococcal meningitis epidemics in the African meningitis belt consist of localised meningitis epidemics (LME) that reach attack proportions of 1% within a few weeks. A meningococcal serogroup A conjugate vaccine was introduced in meningitis belt countries from 2010 on, but LME due to other serogroups continue to occur. The mechanisms underlying LME are poorly understood, but an association with respiratory pathogens has been hypothesised. We analysed national routine surveillance data in high spatial resolution (health centre level) from 13 districts in Burkina Faso, 2004–2014. We defined LME as a weekly incidence rate of suspected meningitis ≥75 per 100,000 during ≥2 weeks; and high incidence episodes of respiratory tract infections (RTI) as the 5th quintile of monthly incidences. We included 10,334 health centre month observations during the meningitis season (January-May), including 85 with LME, and 1891 (1820) high-incidence episodes of upper (lower) RTI. In mixed effects logistic regression accounting for spatial structure, and controlling for dust conditions, relative air humidity and month, the occurrence of LME was strongly associated with high incidence episodes of upper (odds ratio 23.9, 95%-confidence interval 3.1–185.3), but not lower RTI. In the African meningitis belt, meningitis epidemics may be triggered by outbreaks of upper RTI.
Iron deposition is associated with differential macrophage infiltration and therapeutic response to iron chelation in prostate cancer
Authors: Leftin Avigdor , Zhao Huiyong , Turkekul Mesru , de Stanchina Elisa , Manova Katia , Koutcher Jason A. 
Published: September 2017

AbstractImmune cells such as macrophages are drivers and biomarkers of most cancers. Scoring macrophage infiltration in tumor tissue provides a prognostic assessment that is correlated with disease outcome and therapeutic response, but generally requires invasive biopsy. Routine detection of hemosiderin iron aggregates in macrophages in other settings histologically and in vivo by MRI suggests that similar assessments in cancer can bridge a gap in our ability to assess tumor macrophage infiltration. Quantitative histological and in vivo MRI assessments of non-heme cellular iron revealed that preclinical prostate tumor models could be differentiated according to hemosiderin iron accumulation—both in tumors and systemically. Monitoring cellular iron levels during “off-label” administration of the FDA-approved iron chelator deferiprone evidenced significant reductions in tumor size without extensive perturbation to these iron deposits. Spatial profiling of the iron-laden infiltrates further demonstrated that higher numbers of infiltrating macrophage iron deposits was associated with lower anti-tumor chelation therapy response. Imaging macrophages according to their innate iron status provides a new phenotypic window into the immune tumor landscape and reveals a prognostic biomarker associated with macrophage infiltration and therapeutic outcome.
Programmed death-ligand 1 (PD-L1) expression in tumour cell and tumour infiltrating lymphocytes of HER2-positive breast cancer and its prognostic value
Authors: Kim Ahrong , Lee So Jeong , Kim Young Keum , Park Won Young , Park Do Youn , Kim Jee Yeon , Lee Chang Hun , Gong Gyungyub , Huh Gi Yeong , Choi Kyung Un 
Published: September 2017

AbstractImmunotherapy targeting PD-1/PD-L1 axis showed benefits in cancer. Prognostic significance of tumour infiltrating lymphocytes (TILs) has been determined. We evaluated PD-L1 protein expression in tumour cells and TILs, PD-L1 mRNA level and various histopathologic factors including TILs using 167 formalin-fixed paraffin embedded tissues and 39 fresh tissue of HER2-positive breast cancer. TILs level and PD-L1 expression in tumour cells and TILs were significantly correlated one another. PD-L1 positivity in tumour cells was associated with high histologic grade and high TILs level (p < 0.001, both). High PD-L1 immunoscore in TILs and high total immunoscore (in tumour cells and TILs) of PD-L1 were correlated with high histologic grade (p = 0.001 and p < 0.001, respectively), absence of lymphovascular invasion (p = 0.012 and p = 0.007, respectively), negative hormone receptor expression (p = 0.044 and p = 0.001, respectively) and high TILs level (p < 0.001, both). High PD-L1 mRNA expression was associated with high TILs level (p < 0.001, both). PD-L1 positivity in tumour cells was associated with better disease-free survival in HR−/HER2+ breast cancer (p = 0.039). PD-L1 expression in tumour cells and TILs are significantly associated with TILs level in HER2-positive breast cancer. PD-L1 expression in tumour cells might be positive prognostic factor in HR−/HER2+ breast cancers.
Effect of pressure on normal and superconducting state properties of iron based superconductor PrFeAsO0.6F
y
(y = 0.12, 0.14)
Authors: Arumugam S. , Ganguli C. , Thiyagarajan R. , Bhoi D. , Selvan G. Kalai , Manikandan K. , Pariari A. , Mandal P. , Uwatoko Y. 
Published: September 2017

AbstractThe effect of high pressure (up to 8 GPa) on normal and superconducting state properties of PrFeAsO0.6F0.12, an 1111-type iron based superconductor close to optimal doped region, has been investigated by measuring the temperature dependence of resistivity. Initially, the superconducting transition temperature (T
c
) is observed to increase slowly by about 1 K as pressure (P) increases from 0 to 1.3 GPa. With further increase in pressure above 1.3 GPa, T
c
decreases at the rate of ~1.5 K/GPa. The normal-state resistivity decreases monotonically up to 8 GPa. We have also measured the pressure dependence of magnetization (M) on the same piece of PrFeAsO0.6F0.12 sample up to 1.1 GPa and observed T
c
as well as the size of the Meissner signal to increase with pressure in this low-pressure region. In contrast, for an over-doped PrFeAsO0.6F0.14 sample, magnetization measurements up to 1.06 GPa show that both T
c
and the Meissner signal decrease with pressure. The present study clearly reveals two distinct regions in the dome-shaped (T
c
-P) phase diagram of PrFeAsO0.6F0.12.