bluuebunny/crossref_metadata_2025_split huggingface dataset:
Consistent negative response of US crops to high temperatures in observations and crop models
Authors: Schauberger Bernhard , Archontoulis Sotirios , Arneth Almut , Balkovic Juraj , Ciais Philippe , Deryng Delphine , Elliott Joshua , Folberth Christian , Khabarov Nikolay , Müller Christoph , Pugh Thomas A. M. , Rolinski Susanne , Schaphoff Sibyll , Schmid Erwin , Wang Xuhui , Schlenker Wolfram , Frieler Katja 
Published: January 2017

AbstractHigh temperatures are detrimental to crop yields and could lead to global warming-driven reductions in agricultural productivity. To assess future threats, the majority of studies used process-based crop models, but their ability to represent effects of high temperature has been questioned. Here we show that an ensemble of nine crop models reproduces the observed average temperature responses of US maize, soybean and wheat yields. Each day >30 °C diminishes maize and soybean yields by up to 6% under rainfed conditions. Declines observed in irrigated areas, or simulated assuming full irrigation, are weak. This supports the hypothesis that water stress induced by high temperatures causes the decline. For wheat a negative response to high temperature is neither observed nor simulated under historical conditions, since critical temperatures are rarely exceeded during the growing season. In the future, yields are modelled to decline for all three crops at temperatures >30 °C. Elevated CO2can only weakly reduce these yield losses, in contrast to irrigation.
Storing single photons emitted by a quantum memory on a highly excited Rydberg state
Authors: Distante Emanuele , Farrera Pau , Padrón-Brito Auxiliadora , Paredes-Barato David , Heinze Georg , de Riedmatten Hugues 
Published: January 2017

AbstractStrong interaction between two single photons is a long standing and important goal in quantum photonics. This would enable a new regime of nonlinear optics and unlock several applications in quantum information science, including photonic quantum gates and deterministic Bell-state measurements. In the context of quantum networks, it would be important to achieve interactions between single photons from independent photon pairs storable in quantum memories. So far, most experiments showing nonlinearities at the single-photon level have used weak classical input light. Here we demonstrate the storage and retrieval of a paired single photon emitted by an ensemble quantum memory in a strongly nonlinear medium based on highly excited Rydberg atoms. We show that nonclassical correlations between the two photons persist after retrieval from the Rydberg ensemble. Our result is an important step towards deterministic photon–photon interactions, and may enable deterministic Bell-state measurements with multimode quantum memories.
Direct PIP2 binding mediates stable oligomer formation of the serotonin transporter
Authors: Anderluh Andreas , Hofmaier Tina , Klotzsch Enrico , Kudlacek Oliver , Stockner Thomas , Sitte Harald H. , Schütz Gerhard J. 
Published: January 2017

AbstractThe human serotonin transporter (hSERT) mediates uptake of serotonin from the synaptic cleft and thereby terminates serotonergic signalling. We have previously found by single-molecule microscopy that SERT forms stable higher-order oligomers of differing stoichiometry at the plasma membrane of living cells. Here, we report that SERT oligomer assembly at the endoplasmic reticulum (ER) membrane follows a dynamic equilibration process, characterized by rapid exchange of subunits between different oligomers, and by a concentration dependence of the degree of oligomerization. After trafficking to the plasma membrane, however, the SERT stoichiometry is fixed. Stabilization of the oligomeric SERT complexes is mediated by the direct binding to phosphoinositide phosphatidylinositol-4,5-biphosphate (PIP2). The observed spatial decoupling of oligomer formation from the site of oligomer operation provides cells with the ability to define protein quaternary structures independent of protein density at the cell surface.
Drosophila FIT is a protein-specific satiety hormone essential for feeding control
Authors: Sun Jinghan , Liu Chang , Bai Xiaobing , Li Xiaoting , Li Jingyun , Zhang Zhiping , Zhang Yunpeng , Guo Jing , Li Yan 
Published: January 2017

AbstractProtein homeostasis is critical for health and lifespan of animals. However, the mechanisms for controlling protein feeding remain poorly understood. Here we report that in Drosophila, protein intake-induced feeding inhibition (PIFI) is specific to protein-containing food, and this effect is mediated by a fat body (FB) peptide named female-specific independent of transformer (FIT). Upon consumption of protein food, FIT expression is greatly elevated. Secreted FIT peptide in the fly haemolymph conveys this metabolic message to the brain, thereby promoting the release of Drosophila insulin-like peptide 2 (DILP2) and suppressing further protein intake. Interestingly, Fit is a sexually dimorphic gene, and consequently protein consumption-induced insulin release, as well as protein feeding behaviour, are also dimorphic between sexes. Thus, our findings reveal a protein-specific satiety hormone, providing important insights into the complex regulation of feeding decision, as well as the sexual dimorphism in feeding behaviour.
Whole-brain 3D mapping of human neural transplant innervation
Authors: Doerr Jonas , Schwarz Martin Karl , Wiedermann Dirk , Leinhaas Anke , Jakobs Alina , Schloen Florian , Schwarz Inna , Diedenhofen Michael , Braun Nils Christian , Koch Philipp , Peterson Daniel A. , Kubitscheck Ulrich , Hoehn Mathias , Brüstle Oliver 
Published: January 2017

AbstractWhile transplantation represents a key tool for assessing in vivo functionality of neural stem cells and their suitability for neural repair, little is known about the integration of grafted neurons into the host brain circuitry. Rabies virus-based retrograde tracing has developed into a powerful approach for visualizing synaptically connected neurons. Here, we combine this technique with light sheet fluorescence microscopy (LSFM) to visualize transplanted cells and connected host neurons in whole-mouse brain preparations. Combined with co-registration of high-precision three-dimensional magnetic resonance imaging (3D MRI) reference data sets, this approach enables precise anatomical allocation of the host input neurons. Our data show that the same neural donor cell population grafted into different brain regions receives highly orthotopic input. These findings indicate that transplant connectivity is largely dictated by the circuitry of the target region and depict rabies-based transsynaptic tracing and LSFM as efficient tools for comprehensive assessment of host–donor cell innervation.
A broadly protective therapeutic antibody against influenza B virus with two mechanisms of action
Authors: Chai Ning , Swem Lee R. , Park Summer , Nakamura Gerald , Chiang Nancy , Estevez Alberto , Fong Rina , Kamen Lynn , Kho Elviza , Reichelt Mike , Lin Zhonghua , Chiu Henry , Skippington Elizabeth , Modrusan Zora , Stinson Jeremy , Xu Min , Lupardus Patrick , Ciferri Claudio , Tan Man-Wah 
Published: January 2017

AbstractInfluenza B virus (IBV) causes annual influenza epidemics around the world. Here we use anin vivoplasmablast enrichment technique to isolate a human monoclonal antibody, 46B8 that neutralizes all IBVs testedin vitroand protects mice against lethal challenge of all IBVs tested when administered 72 h post infection. 46B8 demonstrates a superior therapeutic benefit over Tamiflu and has an additive antiviral effect in combination with Tamiflu. 46B8 binds to a conserved epitope in the vestigial esterase domain of hemagglutinin (HA) and blocks HA-mediated membrane fusion. After passage of the B/Brisbane/60/2008 virus in the presence of 46B8, we isolated three resistant clones, all harbouring the same mutation (Ser301Phe) in HA that abolishes 46B8 binding to HA at low pH. Interestingly, 46B8 is still able to protect mice against lethal challenge of the mutant viruses, possibly owing to its ability to mediate antibody-dependent cellular cytotoxicity (ADCC).
Identification, validation, and targeting of the mutant p53-PARP-MCM chromatin axis in triple negative breast cancer
Authors: Qiu Wei-Gang , Polotskaia Alla , Xiao Gu , Di Lia , Zhao Yuhan , Hu Wenwei , Philip John , Hendrickson Ronald C. , Bargonetti Jill 
Published: January 2017

AbstractOver 80% of triple negative breast cancers express mutant p53. Mutant p53 often gains oncogenic function suggesting that triple negative breast cancers may be driven by p53 protein type. To determine the chromatin targets of this gain-of-function mutant p53 we used inducible knockdown of endogenous gain-of-function mtp53 in MDA-MB-468 cells in conjunction with stable isotope labeling with amino acids in cell culture and subcellular fractionation. We sequenced over 70,000 total peptides for each corresponding reciprocal data set and were able to identify 3010 unique cytoplasmic fraction proteins and 3403 unique chromatin fraction proteins. The present proteomics experiment corroborated our previous experiment-based results that poly ADP-ribose polymerase has a positive association with mutant p53 on the chromatin. Here, for the first time we report that the heterohexomeric minichromosome maintenance complex that participates in DNA replication initiation ranked as a high mutant p53-chromatin associated pathway. Enrichment analysis identified the minichromosome maintenance members 2–7. To validate this mutant p53- poly ADP-ribose polymerase-minichromosome maintenance functional axis, we experimentally depleted R273H mutant p53 and found a large reduction of the amount of minichromosome maintenance complex proteins on the chromatin. Furthermore a mutant p53-minichromosome maintenance 2 direct interaction was detected. Overexpressed mutant p53, but not wild type p53, showed a protein-protein interaction with minichromosome maintenance 2 and minichromosome maintenance 4. To target the mutant p53- poly ADP-ribose polymerase-minichromosome maintenance axis we treated cells with the poly ADP-ribose polymerase inhibitor talazoparib and the alkylating agent temozolomide and detected synergistic activation of apoptosis only in the presence of mutant p53. Furthermore when minichromosome maintenance 2–7 activity was inhibited the synergistic activation of apoptosis was blocked. This mutant p53- poly ADP-ribose polymerase -minichromosome maintenance axis may be useful for theranostics.
Comparison of efficacy of simo decoction and acupuncture or chewing gum alone on postoperative ileus in colorectal cancer resection: a randomized trial
Authors: Yang Yang , Zuo Hong-Qun , Li Zhao , Qin Yu-Zhou , Mo Xian-Wei , Huang Ming-Wei , Lai Hao , Wu Liu-Cheng , Chen Jian-Si 
Published: January 2017

AbstractTo compared the ability of chewing gum or simo decoction (SMD) and acupuncture to reduce incidence of postoperative ileus (POI) after colorectal cancer resection, patients with colorectal cancer undergoing open or laparoscopic resection were randomized to receive SMD and acupuncture (n = 196), chewing gum alone (n = 197) or no intervention (n = 197) starting on postoperative day 1 and continuing for 5 consecutive days. Patients treated with SMD and acupuncture experienced significantly shorter hospital stay, shorter time to first flatus and shorter time to defecation than patients in the other groups (all P < 0.05). Incidence of grade I and II complications was also significantly lower in patients treated with SMD and acupuncture. Patients who chewed gum were similar to those who received no intervention in terms of hospital stay, incidence of complications, and time to first bowel motion, flatus, and defecation (all P > 0.05). The combination of SMD and acupuncture may reduce the incidence of POI and shorten hospital stay for patients with colorectal cancer after resection. In contrast, chewing gum does not appear to affect recovery of bowel function or hospital stay, though it may benefit patients who undergo open resection. (Clinicaltrials.gov registration number: NCT02813278).
Surface reconstructions and related local properties of a BiFeO3 thin film
Authors: Jin L. , Xu P. X. , Zeng Y. , Lu L. , Barthel J. , Schulthess T. , Dunin-Borkowski R. E. , Wang H. , Jia C. L. 
Published: January 2017

AbstractCoupling between lattice and order parameters, such as polarization in ferroelectrics and/or polarity in polar structures, has a strong impact on surface relaxation and reconstruction. However, up to now, surface structures that involve the termination of both matrix polarization and polar atomic planes have received little attention, particularly on the atomic scale. Here, we study surface structures on a BiFeO3 thin film using atomic-resolution scanning transmission electron microscopy and spectroscopy. Two types of surface structure are found, depending on the polarization of the underlying ferroelectric domain. On domains that have an upward polarization component, a layer with an Aurivillius-Bi2O2-like structural unit is observed. Dramatic changes in local properties are measured directly below the surface layer. On domains that have a downward polarization component, no reconstructions are visible. Calculations based on ab initio density functional theory reproduce the results and are used to interpret the formation of the surface structures.
Improvement in the biochemical and chemical properties of badland soils by thorny bamboo
Authors: Shiau Yo-Jin , Wang Hsueh-Ching , Chen Tsai-Huei , Jien Shih-Hau , Tian Guanglong , Chiu Chih-Yu 
Published: January 2017

AbstractBadland soils—which have high silt and clay contents, bulk density, and soil electric conductivity— cover a large area of Southern Taiwan. This study evaluated the amelioration of these poor soils by thorny bamboo, one of the few plant species that grows in badland soils. Soil physiochemical and biological parameters were measured from three thorny bamboo plantations and nearby bare lands. Results show that bamboo increased microbial C and N, soil acid-hydrolysable C, recalcitrant C, and soluble organic C of badland soils. High microbial biomass C to total organic C ratio indicates that soil organic matter was used more efficiently by microbes colonizing bamboo plantations than in bare land soils. High microbial respiration to biomass C ratio in bare land soils confirmed environmentally induced stress. Soil microbes in bare land soils also faced soil organic matter with the high ratio of recalcitrant C to total organic C. The high soil acid-hydrolysable C to total organic C ratio at bamboo plantations supported the hypothesis that decomposition of bamboo litter increased soil C in labile fractions. Overall, thorny bamboo improved soil quality, thus, this study demonstratesthat planting thorny bamboo is a successful practice for the amelioration of badland soils.
Wells provide a distorted view of life in the aquifer: implications for sampling, monitoring and assessment of groundwater ecosystems
Authors: Korbel Kathryn , Chariton Anthony , Stephenson Sarah , Greenfield Paul , Hose Grant C. 
Published: January 2017

AbstractWhen compared to surface ecosystems, groundwater sampling has unique constraints, including limited access to ecosystems through wells. In order to monitor groundwater, a detailed understanding of groundwater biota and what biological sampling of wells truly reflects, is paramount. This study aims to address this uncertainty, comparing the composition of biota in groundwater wells prior to and after purging, with samples collected prior to purging reflecting a potentially artificial environment and samples collected after purging representing the surrounding aquifer. This study uses DNA community profiling (metabarcoding) of 16S rDNA and 18S rDNA, combined with traditional stygofauna sampling methods, to characterise groundwater biota from four catchments within eastern Australia. Aquifer waters were dominated by Archaea and bacteria (e.g. Nitrosopumilales) that are often associated with nitrification processes, and contained a greater proportion of bacteria (e.g. Anaerolineales) associated with fermenting processes compared to well waters. In contrast, unpurged wells contained greater proportions of pathogenic bacteria and bacteria often associated with denitrification processes. In terms of eukaryotes, the abundances of copepods, syncarids and oligochaetes and total abundances of stygofauna were greater in wells than aquifers. These findings highlight the need to consider sampling requirements when completing groundwater ecology surveys.
Aurora Kinase A is a Biomarker for Bladder Cancer Detection and Contributes to its Aggressive Behavior
Authors: Mobley Aaron , Zhang Shizhen , Bondaruk Jolanta , Wang Yan , Majewski Tadeusz , Caraway Nancy P. , Huang Li , Shoshan Einav , Velazquez-Torres Guermarie , Nitti Giovanni , Lee Sangkyou , Lee June Goo , Fuentes-Mattei Enrique , Willis Daniel , Zhang Li , Guo Charles C. , Yao Hui , Baggerly Keith , Lotan Yair , Lerner Seth P. , Dinney Colin , McConkey David , Bar-Eli Menashe , Czerniak Bogdan 
Published: January 2017

AbstractThe effects of AURKA overexpression associated with poor clinical outcomes have been attributed to increased cell cycle progression and the development of genomic instability with aneuploidy. We used RNA interference to examine the effects of AURKA overexpression in human bladder cancer cells. Knockdown had minimal effects on cell proliferation but blocked tumor cell invasion. Whole genome mRNA expression profiling identified nicotinamide N-methyltransferase (NNMT) as a downstream target that was repressed by AURKA. Chromatin immunoprecipitation and NNMT promoter luciferase assays revealed that AURKA’s effects on NNMT were caused by PAX3-mediated transcriptional repression and overexpression of NNMT blocked tumor cell invasion in vitro. Overexpression of AURKA and activation of its downstream pathway was enriched in the basal subtype in primary human tumors and was associated with poor clinical outcomes. We also show that the FISH test for the AURKA gene copy number in urine yielded a specificity of 79.7% (95% confidence interval [CI] = 74.2% to 84.1%), and a sensitivity of 79.6% (95% CI = 74.2% to 84.1%) with an AUC of 0.901 (95% CI = 0.872 to 0.928; P < 0.001). These results implicate AURKA as an effective biomarker for bladder cancer detection as well as therapeutic target especially for its basal type.
Cultivation and energy efficient harvesting of microalgae using thermoreversible sol-gel transition
Authors: Estime Bendy , Ren Dacheng , Sureshkumar Radhakrishna 
Published: January 2017

AbstractMicroalgae represent a promising source of renewable biomass for the production of biofuels and valuable chemicals. However, energy efficient cultivation and harvesting technologies are necessary to improve economic viability. A Tris-Acetate-Phosphate-Pluronic (TAPP) medium that undergoes a thermoreversible sol-gel transition is developed to efficiently culture and harvest microalgae without affecting the productivity as compared to that in traditional culture in a well-mixed suspension. After seeding microalgae in the TAPP medium in a solution phase at 15 °C, the temperature is increased by 7 °C to induce gelation. Within the gel, microalgae are observed to grow in large clusters rather than as isolated cells. The settling velocity of the microalgal clusters is approximately ten times larger than that of individual cells cultured in typical solution media. Such clusters are easily harvested gravimetrically by decreasing the temperature to bring the medium to a solution phase.
Integrated molecular analysis reveals complex interactions between genomic and epigenomic alterations in esophageal adenocarcinomas
Authors: Peng DunFa , Guo Yan , Chen Heidi , Zhao Shilin , Washington Kay , Hu TianLing , Shyr Yu , El-Rifai Wael 
Published: January 2017

AbstractThe incidence of esophageal adenocarcinoma (EAC) is rapidly rising in the United States and Western countries. In this study, we carried out an integrative molecular analysis to identify interactions between genomic and epigenomic alterations in regulating gene expression networks in EAC. We detected significant alterations in DNA copy numbers (CN), gene expression levels, and DNA methylation profiles. The integrative analysis demonstrated that altered expression of 1,755 genes was associated with changes in CN or methylation. We found that expression alterations in 84 genes were associated with changes in both CN and methylation. These data suggest a strong interaction between genetic and epigenetic events to modulate gene expression in EAC. Of note, bioinformatics analysis detected a prominent K-RAS signature and predicted activation of several important transcription factor networks, including β-catenin, MYB, TWIST1, SOX7, GATA3 and GATA6. Notably, we detected hypomethylation and overexpression of several pro-inflammatory genes such as COX2, IL8 and IL23R, suggesting an important role of epigenetic regulation of these genes in the inflammatory cascade associated with EAC. In summary, this integrative analysis demonstrates a complex interaction between genetic and epigenetic mechanisms providing several novel insights for our understanding of molecular events in EAC.
Acetylcholine acts through M3 muscarinic receptor to activate the EGFR signaling and promotes gastric cancer cell proliferation
Authors: Yu Huangfei , Xia Hongwei , Tang Qiulin , Xu Huanji , Wei Guoqing , Chen Ying , Dai Xinyu , Gong Qiyong , Bi Feng 
Published: January 2017

AbstractAcetylcholine (ACh), known as a neurotransmitter, regulates the functions of numerous fundamental central and peripheral nervous system. Recently, emerging evidences indicate that ACh also plays an important role in tumorigenesis. However, little is known about the role of ACh in gastric cancer. Here, we reported that ACh could be auto-synthesized and released from MKN45 and BGC823 gastric cancer cells. Exogenous ACh promoted cell proliferation in a does-dependent manner. The M3R antagonist 4-DAMP, but not M1R antagonist trihexyphenidyl and M2/4 R antagonist AFDX-116, could reverse the ACh-induced cell proliferation. Moreover, ACh, via M3R, activated the EGFR signaling to induce the phosphorylation of ERK1/2 and AKT, and blocking EGFR pathway by specific inhibitor AG1478 suppressed the ACh induced cell proliferation. Furthermore, the M3R antagonist 4-DAMP and darifenacin could markedly inhibit gastric tumor formation in vivo. 4-DAMP could also significantly enhance the cytotoxic activity of 5-Fu against the MKN45 and BGC823 cells, and induce the expression of apoptosis-related proteins such as Bax and Caspase-3. Together, these findings indicated that the autocrine ACh could act through M3R and the EGFR signaling to promote gastric cancer cells proliferation, targeting M3R or EGFR may provide us a potential therapeutic strategy for gastric cancer treatment.