bluuebunny/crossref_metadata_2025_split huggingface dataset:
Natural brain-information interfaces: Recommending information by relevance inferred from human brain signals
Authors: Eugster Manuel J. A. , Ruotsalo Tuukka , Spapé Michiel M. , Barral Oswald , Ravaja Niklas , Jacucci Giulio , Kaski Samuel 
Published: December 2016

AbstractFinding relevant information from large document collections such as the World Wide Web is a common task in our daily lives. Estimation of a user’s interest or search intention is necessary to recommend and retrieve relevant information from these collections. We introduce a brain-information interface used for recommending information by relevance inferred directly from brain signals. In experiments, participants were asked to read Wikipedia documents about a selection of topics while their EEG was recorded. Based on the prediction of word relevance, the individual’s search intent was modeled and successfully used for retrieving new relevant documents from the whole English Wikipedia corpus. The results show that the users’ interests toward digital content can be modeled from the brain signals evoked by reading. The introduced brain-relevance paradigm enables the recommendation of information without any explicit user interaction and may be applied across diverse information-intensive applications.
A retrospective study of pyogenic liver abscess focusing on Klebsiella pneumoniae as a primary pathogen in China from 1994 to 2015
Authors: Qian Yun , Wong Chi Chun , Lai Sanchuan , Chen Huarong , He Xingkang , Sun Leimin , Wu Jiaguo , Zhou Jiancang , Yu Jun , Liu Weili , Zhou Daoyang , Si Jianmin 
Published: December 2016

AbstractPyogenic liver abscess (PLA) is a common intra-abdominal infection in adults. In this study, we aim to explore demographic and clinical characteristics of PLA focusing on Klebsiella pneumoniae (K. pneumoniae) induced PLA (KP-PLA) in mainland China. A retrospective review of medical records from all patients with KP-PLA admitted to a tertiary teaching hospital over a 21-year period (1994–2015) was performed. Among 296 PLA cases with confirmed culture-positive data, K. pneumoniae was revealed as the predominant pathogen (n = 189, 63.9%), followed by Escherichia coli (n = 39, 13.2%). Strikingly, KP-PLA patients had a higher incidence of metabolic disorders, such as diabetes mellitus (49.7% vs. 36.4%, P = 0.027; odds ratio (OR): 1.725; 95% confidence interval (CI): 1.061–2.805), hypertension (38.1% vs. 19.6%, P = 0.001; OR: 2.520; 95% CI: 1.439–4.413), and fatty liver (32.3% vs. 14.0%, P = 0.001; OR: 2.923; 95% CI: 1.564–5.462) than those with non-K. pneumoniae induced PLA (non-KP-PLA). Moreover, patients with KP-PLA had higher susceptibility to septic metastatic infection at distant sites compared to those with non-KP-PLA (10.6% vs. 3.7%, p = 0.038). Our results indicate that K. pneumoniae is the predominant pathogen of PLA in mainland China. KP-PLA is frequently diagnosed in patients with metabolic diseases and has a higher risk for septic metastatic infection.
Identification of a CD133−CD55− population functions as a fetal common skeletal progenitor
Authors: Weng Lihong , Hu Xingbin , Kumar Bijender , Garcia Mayra , Todorov Ivan , Jung Xiaoman , Marcucci Guido , Forman Stephen J. , Chen Ching-Cheng 
Published: December 2016

AbstractIn this study, we identified a CD105+CD90.1−CD133−CD55− (CD133−CD55−) population in the fetal skeletal element that can generate bone and bone marrow. Besides osteoblasts and chondrocytes, the CD133−CD55− common progenitors can give rise to marrow reticular stromal cells and perivascular mesenchymal progenitors suggesting they function as the fetal common skeletal progenitor. Suppression of CXCL12 and Kitl expression in CD133−CD55− common progenitors severely disrupted the BM niche formation but not bone generation. Thus, CD133−CD55− common progenitors are the main source of CXCL12 and Kitl producing cells in the developing marrow.
Random walk with chaotically driven bias
Authors: Kim Song-Ju , Naruse Makoto , Aono Masashi , Hori Hirokazu , Akimoto Takuma 
Published: December 2016

AbstractWe investigate two types of random walks with a fluctuating probability (bias) in which the random walker jumps to the right. One is a ‘time-quenched framework’ using bias time series such as periodic, quasi-periodic, and chaotic time series (chaotically driven bias). The other is a ‘time-annealed framework’ using the fluctuating bias generated by a stochastic process, which is not quenched in time. We show that the diffusive properties in the time-quenched framework can be characterised by the ensemble average of the time-averaged variance (ETVAR), whereas the ensemble average of the time-averaged mean square displacement (ETMSD) fails to capture the diffusion, even when the total bias is zero. We demonstrate that the ETVAR increases linearly with time, and the diffusion coefficient can be estimated by the time average of the local diffusion coefficient. In the time-annealed framework, we analytically and numerically show normal diffusion and superdiffusion, similar to the Lévy walk. Our findings will lead to new developments in information and communication technologies, such as efficient energy transfer for information propagation and quick solution searching.
Glymphatic solute transport does not require bulk flow
Authors: Asgari Mahdi , de Zélicourt Diane , Kurtcuoglu Vartan 
Published: December 2016

AbstractObservations of fast transport of fluorescent tracers in mouse brains have led to the hypothesis of bulk water flow directed from arterial to venous paravascular spaces (PVS) through the cortical interstitium. At the same time, there is evidence for interstitial solute transport by diffusion rather than by directed bulk fluid motion. It has been shown that the two views may be consolidated by intracellular water flow through astrocyte networks combined with mainly diffusive extracellular transport of solutes. This requires the presence of a driving force that has not been determined to date, but for which arterial pulsation has been suggested as the origin. Here we show that arterial pulsation caused by pulse wave propagation is an unlikely origin of this hypothetical driving force. However, we further show that such pulsation may still lead to fast para-arterial solute transport through dispersion, that is, through the combined effect of local mixing and diffusion in the para-arterial space.
Three-Dimensional Simultaneous Arbitrary-Way Orbital Angular Momentum Generator Based on Transformation Optics
Authors: Zhang Chen , Deng Li , Hong Wei Jun , Jiang Wei Xiang , Zhu Jian Feng , Zhou Mi , Wang Ling , Li Shu Fang , Peng Biao 
Published: December 2016

AbstractIn wireless communications, people utilize the technology of diversity against multipath fading, so as to improve the reliability of communication equipment. One of the long-standing problems in diversity antennas is the limited number of diversity in a certain space. In this paper, we provide a solution to this issue by a three-dimensional (3D) simultaneous arbitrary-way orbital angular momentum (OAM) generator (3D SAWOG) based on transformation optics. The proposed 3D SAWOG consists of a metamaterial block and a group of transformation cylinders, by which arbitrary-way planar wavefronts can be converted to helical wavefronts with various topological charges simultaneously. The 2D four-way OAM generator and the 3D SAWOG are analyzed, designed, and simulated. The simulation results validate the performance of a 3D SAWOG successfully, indicating that the proposed model possess a high mode purity and expansibility. The SAWOG can be used as a novel diversity antenna array due to the orthogonal property among different modes, which could provide more degrees of freedom than traditional dual-polarization antennas, further improving the reliability of the communication systems.
In Silico identification of SNP diversity in cultivated and wild tomato species: insight from molecular simulations
Authors: Bhardwaj Archana , Dhar Yogeshwar Vikram , Asif Mehar Hasan , Bag Sumit K 
Published: December 2016

AbstractSingle Nucleotide Polymorphisms (SNPs), an important source of genetic variations, are often used in crop improvement programme. The present study represented comprehensive In silico analysis of nucleotide polymorphisms in wild (Solanum habrochaites) and cultivated (Solanum lycopersicum) species of tomato to explore the consequence of substitutions both at sequence and structure level. A total of 8978 SNPs having Ts/Tv (Transition/Transversion) ratio 1.75 were identified from the Expressed Sequence Tag (EST) and Next Generation Sequence (NGS) data of both the species available in public databases. Out of these, 1838 SNPs were non-synonymous and distributed in 988 protein coding genes. Among these, 23 genes containing 96 SNPs were involved in traits markedly different between the two species. Furthermore, there were 28 deleterious SNPs distributed in 27 genes and a few of these genes were involved in plant pathogen interaction and plant hormone pathways. Molecular docking and simulations of several selected proteins showed the effect of SNPs in terms of compactness, conformation and interaction ability. Observed SNPs exhibited various types of motif binding effects due to nucleotide changes. SNPs that provide the evidence of differential motif binding and interaction behaviour could be effectively used for the crop improvement program.
In situ size sorting in CVD synthesis of Si microspheres
Authors: Garín M. , Fenollosa R. , Kowalski L. 
Published: December 2016

AbstractSilicon microspheres produced in gas-phase by hot-wall CVD offer unique quality in terms of sphericity, surface smoothness, and size. However, the spheres produced are polydisperse in size, which typically range from 0.5 μm to 5 μm. In this work we show through experiments and calculations that thermophoretic forces arising from strong temperature gradients inside the reactor volume effectively sort the particles in size along the reactor. These temperature gradients are shown to be produced by a convective gas flow. The results prove that it is possible to select the particle size by collecting them in a particular reactor region, opening new possibilities towards the production by CVD of size-controlled high-quality silicon microspheres.
Functional characterization of aconitase X as a cis-3-hydroxy-L-proline dehydratase
Authors: Watanabe Seiya , Tajima Kunihiko , Fujii Satoshi , Fukumori Fumiyasu , Hara Ryotaro , Fukuda Rio , Miyazaki Mao , Kino Kuniki , Watanabe Yasuo 
Published: December 2016

AbstractIn the aconitase superfamily, which includes the archetypical aconitase, homoaconitase, and isopropylmalate isomerase, only aconitase X is not functionally annotated. The corresponding gene (LhpI) was often located within the bacterial gene cluster involved in L-hydroxyproline metabolism. Screening of a library of (hydroxy)proline analogues revealed that this protein catalyzes the dehydration of cis-3-hydroxy-L-proline to Δ1-pyrroline-2-carboxylate. Furthermore, electron paramagnetic resonance and site-directed mutagenic analyses suggests the presence of a mononuclear Fe(III) center, which may be coordinated with one glutamate and two cysteine residues. These properties were significantly different from those of other aconitase members, which catalyze the isomerization of α- to β-hydroxy acids, and have a [4Fe-4S] cluster-binding site composed of three cysteine residues. Bacteria with the LhpI gene could degrade cis-3-hydroxy-L-proline as the sole carbon source, and LhpI transcription was up-regulated not only by cis-3-hydroxy-L-proline, but also by several isomeric 3- and 4-hydroxyprolines.
Coastal barrier stratigraphy for Holocene high-resolution sea-level reconstruction
Authors: Costas Susana , Ferreira Óscar , Plomaritis Theocharis A. , Leorri Eduardo 
Published: December 2016

AbstractThe uncertainties surrounding present and future sea-level rise have revived the debate around sea-level changes through the deglaciation and mid- to late Holocene, from which arises a need for high-quality reconstructions of regional sea level. Here, we explore the stratigraphy of a sandy barrier to identify the best sea-level indicators and provide a new sea-level reconstruction for the central Portuguese coast over the past 6.5 ka. The selected indicators represent morphological features extracted from coastal barrier stratigraphy, beach berm and dune-beach contact. These features were mapped from high-resolution ground penetrating radar images of the subsurface and transformed into sea-level indicators through comparison with modern analogs and a chronology based on optically stimulated luminescence ages. Our reconstructions document a continuous but slow sea-level rise after 6.5 ka with an accumulated change in elevation of about 2 m. In the context of SW Europe, our results show good agreement with previous studies, including the Tagus isostatic model, with minor discrepancies that demand further improvement of regional models. This work reinforces the potential of barrier indicators to accurately reconstruct high-resolution mid- to late Holocene sea-level changes through simple approaches.
The known genetic loci for telomere length may be involved in the modification of telomeres length after birth
Authors: Weng Qiao , Du Jiangbo , Yu Fei , Huang Tongtong , Chen Mengxi , Lv Hong , Ma Hongxia , Hu Zhibin , Jin Guangfu , Hu Yali , Shen Hongbing 
Published: December 2016

AbstractTelomere length varies considerably among individuals. It is highly heritable and decreases with ageing or ageing related diseases. Recently, genome-wide association studies (GWAS) have identified several genetic loci associated with telomere length in adults. However, it is unclear whether these loci represent the genetic basis of telomere length or determine the individual susceptibility to shortening during growth process. Using DNA extracted from peripheral and cord blood of 444 mother-newborn pairs from a Chinese population, we measured relative telomere length (RTL) and genotyped eight known telomere length related variants that were initially identified in populations of European descent. We observed the T allele of rs10936599 and the T allele of rs2736100 were norminally associated with shorter RTL (P = 0.041 and 0.046, respectively) in maternal samples. Furthermore, the Weighted genetic score (WGS) of eight variants was significantly associated with RTL in maternal samples (R2 = 0.012, P = 0.025). However, we didn’t detect any significant associations for any individual variant or the combined WGS with RTL in newborns. These findings didn’t support the hypothesis that telomere length related loci may affect telomere length at birth, and we suggested that these loci may play a role in telomere length modification during life course.
Inhibition of PKR protects against H2O2-induced injury on neonatal cardiac myocytes by attenuating apoptosis and inflammation
Authors: Wang Yongyi , Men Min , Xie Bo , Shan Jianggui , Wang Chengxi , Liu Jidong , Zheng Hui , Yang Wengang , Xue Song , Guo Changfa 
Published: December 2016

AbstractReactive oxygenation species (ROS) generated from reperfusion results in cardiac injury through apoptosis and inflammation, while PKR has the ability to promote apoptosis and inflammation. The aim of the study was to investigate whether PKR is involved in hydrogen peroxide (H2O2) induced neonatal cardiac myocytes (NCM) injury. In our study, NCM, when exposed to H2O2, resulted in persistent activation of PKR due to NCM endogenous RNA. Inhibition of PKR by 2-aminopurine (2-AP) or siRNA protected against H2O2 induced apoptosis and injury. To elucidate the mechanism, we revealed that inhibition of PKR alleviated H2O2 induced apoptosis companied by decreased caspase3/7 activity, BAX and caspase-3 expression. We also revealed that inhibition of PKR suppressed H2O2 induced NFκB pathway and NLRP3 activation. Finally, we found ADAR1 mRNA and protein expression were both induced after H2O2 treatment through STAT-2 dependent pathway. By gain and loss of ADAR1 expression, we confirmed ADAR1 modulated PKR activity. Therefore, we concluded inhibition of PKR protected against H2O2-induced injury by attenuating apoptosis and inflammation. A self-preservation mechanism existed in NCM that ADAR1 expression is induced by H2O2 to limit PKR activation simultaneously. These findings identify a novel role for PKR/ADAR1 in myocardial reperfusion injury.
Microneedles with Controlled Bubble Sizes and Drug Distributions for Efficient Transdermal Drug Delivery
Authors: Wang Qi Lei , Zhu Dan Dan , Liu Xu Bo , Chen Bo Zhi , Guo Xin Dong 
Published: December 2016

AbstractDrug loaded dissolving microneedles (DMNs) fabricated with water soluble polymers have received increasing attentions as a safe and efficient transdermal drug delivery system. Usually, to reach a high drug delivery efficiency, an ideal drug distribution is gathering more drugs in the tip or the top part of DMNs. In this work, we introduce an easy and new method to introduce a bubble with controlled size into the body of DMNs. The introduction of bubbles can prevent the drug diffusion into the whole body of the MNs. The heights of the bubbles are well controlled from 75 μm to 400 μm just by changing the mass concentrations of polymer casting solution from 30 wt% to 10 wt%. The drug-loaded bubble MNs show reliable mechanical properties and successful insertion into the skins. For the MNs prepared from 15 wt% PVA solution, bubble MNs achieve over 80% of drug delivery efficiency in 20 seconds, which is only 10% for the traditional solid MNs. Additionally, the bubble microstructures in the MNs are also demonstrated to be consistent and identical regardless the extension of MN arrays. These scalable bubble MNs may be a promising carrier for the transdermal delivery of various pharmaceuticals.
A proteolytic modification of AIM promotes its renal excretion
Authors: Yamazaki Tomoko , Sugisawa Ryoichi , Hiramoto Emiri , Takai Ryosuke , Matsumoto Ayaka , Senda Yoshie , Nakashima Katsuhiko , Nelson Peter S. , Lucas Jared M. , Morgan Andrew , Li Zhenghua , Yamamura Ken-ichi , Arai Satoko , Miyazaki Toru 
Published: December 2016

AbstractApoptosis inhibitor of macrophage (AIM, encoded by cd5l) is a multi-functional circulating protein that has a beneficial role in the regulation of a broad range of diseases, some of which are ameliorated by AIM administration in mice. In blood, AIM is stabilized by association with IgM pentamers and maintains its high circulating levels. The mechanism regulating the excessive accumulation of blood AIM remains unknown, although it is important, since a constitutive increase in AIM levels promotes chronic inflammation. Here we found a physiological AIM-cleavage process that induces destabilization of AIM and its excretion in urine. In blood, IgM-free AIM appeared to be cleaved and reduced in size approximately 10 kDa. Cleaved AIM was unable to bind to IgM and was selectively filtered by the glomerulus, thereby excreted in urine. Amino acid substitution at the cleavage site resulted in no renal excretion of AIM. Interestingly, cleaved AIM retained a comparable potency with full-length AIM in facilitating the clearance of dead cell debris in injured kidney, which is a key response in the recovery of acute kidney injury. Identification of AIM-cleavage and resulting functional modification could be the basis for designing safe and efficient AIM therapy for various diseases.
Glacial refugia and the prediction of future habitat coverage of the South American lichen species Ochrolechia austroamericana
Authors: Kukwa Martin , Kolanowska Marta 
Published: December 2016

AbstractThe biogeographic history of lichenized fungi remains unrevealed because those organisms rarely fossilize due to their delicate, often tiny and quickly rotting thalli. Also the ecology and factors limiting occurrence of numerous taxa, especially those restricted in their distribution to tropical areas are poorly recognized. The aim of this study was to determine localization of glacial refugia of South American Ochrolechia austroamericana and to estimate the future changes in the coverage of its habitats using ecological niche modeling tools. The general glacial potential range of the studied species was wider than it is nowadays and its niches coverage decreased by almost 25% since last glacial maximum. The refugial areas were covered by cool and dry grasslands and scrubs and suitable niches in South America were located near the glacier limit. According to our analyses the further climate changes will not significantly influence the distribution of the suitable niches of O. austroamericana.
Effect of Unplanned Therapy on the Prognosis of Patients with Extremity Osteosarcoma
Authors: Wang Bing , Xu Ming , Zheng Kai , Yu Xiuchun 
Published: December 2016

AbstractUnplanned therapy for extremity osteosarcoma can result in erroneous surgical procedures and lack of neoadjuvant chemotherapy before the first operation. Our aim was to compare the prognosis between patients with extremity osteosarcoma who received unplanned therapy and those who received standard treatment. This was a retrospective review of patients with extremity osteosarcoma who received appropriate surgical treatment and neoadjuvant chemotherapy (n = 79) and those who received unplanned therapy (n = 24) between June 2000 and October 2014. Survival rate, local recurrence rate and metastasis rate were compared between the two groups. We found that patients who had unplanned therapy had a higher local recurrence rate (41.7% vs. 21.5%; P = 0.049) and a shorter mean time for recurrence (8.90 vs. 14.59 months; P = 0.018). There was no significant difference between groups in the 5-year survival rate (56.3% vs.67.8%; P = 0.356), metastasis rate (45.8% vs. 30.4%; P = 0.125) and mean time to metastasis (23.18 vs.18.24 months; P = 0.396). Our findings suggest that unplanned therapy for extremity osteosarcoma can result in failure of local control. The use of supplementary interventions after unplanned therapy, such as neoadjuvant chemotherapy and limb salvage surgery, may explain the similar survival and metastasis rates between patients receiving unplanned therapy and those receiving standard treatment.
Intermolecular Interactions in the TMEM16A Dimer Controlling Channel Activity
Authors: Scudieri Paolo , Musante Ilaria , Gianotti Ambra , Moran Oscar , Galietta Luis J. V. 
Published: December 2016

AbstractTMEM16A and TMEM16B are plasma membrane proteins with Ca2+-dependent Cl− channel function. By replacing the carboxy-terminus of TMEM16A with the equivalent region of TMEM16B, we obtained channels with potentiation of channel activity. Progressive shortening of the chimeric region restricted the “activating domain” to a short sequence close to the last transmembrane domain and led to TMEM16A channels with high activity at very low intracellular Ca2+ concentrations. To elucidate the molecular mechanism underlying this effect, we carried out experiments based on double chimeras, Forster resonance energy transfer, and intermolecular cross-linking. We also modeled TMEM16A structure using the Nectria haematococca TMEM16 protein as template. Our results indicate that the enhanced activity in chimeric channels is due to altered interaction between the carboxy-terminus and the first intracellular loop in the TMEM16A homo-dimer. Mimicking this perturbation with a small molecule could be the basis for a pharmacological stimulation of TMEM16A-dependent Cl− transport.