bluuebunny/crossref_metadata_2025_split huggingface dataset:
Impact of reduced rates of tiafenacil at vegetative growth stages on soybean growth and yield
Authors: Miller Donnie K. , Bond Jason A. , Butts Thomas R. , Steckel Lawrence E. , Stephenson Daniel O. , Kouame Koffi Badou-Jeremie 
Published: October 2024

AbstractTiafenacil is a new non-selective protoporphyrinogen IX oxidase (PPO)-inhibiting herbicide with both grass and broadleaf activity labeled for preplant application to corn (Zea mays L.), cotton (Gossypium hirsutum L.), soybean [Glycine max (L.) Merr.], and wheat (Triticum aestivum L.). Early-season soybean emergence and growth often coincide in the U.S. Midsouth with preplant herbicide application in later-planted cotton and soybean, thereby increasing opportunity for off-target herbicide movement from adjacent fields. Field studies were conducted in 2022 to identify any deleterious impacts of reduced rates of tiafenacil (12.5% to 0.4% of the lowest labeled application rate of 24.64 g ai ha−1) applied to 1- to 2-leaf soybean. Visual injury at 1 wk after treatment (WAT) with 1/8×, 1/16×, 1/32×, and 1/64× rate of tiafenacil was 80%, 61%, 39%, and 21%, while at 4 WAT, these respective rates resulted in visual injury of 67%, 33%, 14%, and 4%. Tiafenacil at these respective rates reduced soybean height 55% to 2% and 53% to 5% at 1 and 4 WAT and soybean yield 53%, 24%, 5%, and 1%. Application of tiafenacil directly adjacent to soybean in early vegetative growth should be avoided, as severe visual injury will occur. In cases where off-target movement does occur, impacted soybean should not be expected to fully recover, and negative impact on growth and yield will be observed.
Effect of postemergence applications of aminocyclopyrachlor, aminopyralid, 2,4-D, and dicamba on non–auxin resistant soybean
Authors: Mueller Thomas C. , Clark Trey I. , Vargas Jose J. , Steckel Lawrence E. 
Published: October 2024

AbstractSoybean [Glycine max (L.) Merr.] that lack resistance to auxin herbicides [i.e., not genetically modified for resistance] have well-documented responses to those particular herbicides, with yield loss being probable. When a soybean field is injured by auxin herbicides, regulatory authorities often collect a plant sample from that field. This research attempted to simulate soybean exposures due to accidental mixing of incorrect herbicides, tank contamination, or particle drift. This research examined whether analytical testing of herbicide residues on soybean to aminocyclopyrachlor (ACP), aminopyralid, 2,4-D, or dicamba would be related to the visual observations and yield responses from these herbicides. ACP and aminopyralid were applied to R1 soybean at 0.1, 1, and 10 g ae ha−1; 2,4-D and dicamba were applied at 1, 10, and 100 g ae ha−1. Visual evaluations and plant sample collections were undertaken at 1, 3, 7, 14, and 21 d after treatment (DAT), and yield was measured. The conservative limits of detection for the four herbicides in this project were 5, 10, 5, and 5 ng g−1 fresh weight of soybean for ACP, aminopyralid, 2,4-D, and dicamba, respectively. Many of the plant samples were non-detects, especially at lower application dosages. All herbicide concentrations rapidly declined soon after application, and many reached nondetectable limits by 14 DAT. All herbicide treatments caused soybean injury, although the response to 2,4-D was markedly lower than the responses to the other three herbicides. There was no apparent correlation between herbicide concentrations (which were declining over time) and the observed soybean injury (which was increasing over time or staying the same). This research indicated that plant samples should be collected as soon as possible after soybean exposure to auxin herbicides.
Surface Warming Constraint Projects Less Permafrost Thawing in High Mountain Asia
Authors: Jiang Jie , Zhou Tianjun , Cao Bin 
Published: October 2024

AbstractReliable projections of permafrost change are crucial for estimating permafrost carbon loss. However, potential model biases in surface air temperature may yield unrealistic projections of future permafrost area. Here, by leveraging the emergent relationship between equilibrium climate sensitivity and projected changes in mean annual air temperature over High Mountain Asia (HMA), we mitigate the overestimated local warming rates and excessive thawing of permafrost associated with the “hot model” problem in models participating in the Coupled Model Intercomparison Project phase 6. After constraint, permafrost area over HMA will reduce by 37%, 64% and 99% in 2081–2100 relative to present‐day under the SSP1‐2.6, SSP2‐4.5 and SSP5‐8.5 scenarios, respectively. In contrast, the unconstrained projections tend to overestimate the loss of permafrost area by nearly 10% under the low and mid‐emission scenarios due to the overestimation of local warming rates. These findings are crucial for policymaking and provide valuable insights into global permafrost projection.
Deep learning with photonic neural cellular automata
Authors: Li Gordon H. Y. , Leefmans Christian R. , Williams James , Gray Robert M. , Parto Midya , Marandi Alireza 
Published: October 2024

AbstractRapid advancements in deep learning over the past decade have fueled an insatiable demand for efficient and scalable hardware. Photonics offers a promising solution by leveraging the unique properties of light. However, conventional neural network architectures, which typically require dense programmable connections, pose several practical challenges for photonic realizations. To overcome these limitations, we propose and experimentally demonstrate Photonic Neural Cellular Automata (PNCA) for photonic deep learning with sparse connectivity. PNCA harnesses the speed and interconnectivity of photonics, as well as the self-organizing nature of cellular automata through local interactions to achieve robust, reliable, and efficient processing. We utilize linear light interference and parametric nonlinear optics for all-optical computations in a time-multiplexed photonic network to experimentally perform self-organized image classification. We demonstrate binary (two-class) classification of images using as few as 3 programmable photonic parameters, achieving high experimental accuracy with the ability to also recognize out-of-distribution data. The proposed PNCA approach can be adapted to a wide range of existing photonic hardware and provides a compelling alternative to conventional photonic neural networks by maximizing the advantages of light-based computing whilst mitigating their practical challenges. Our results showcase the potential of PNCA in advancing photonic deep learning and highlights a path for next-generation photonic computers.
Cacna1c deficiency in forebrain glutamatergic neurons alters behavior and hippocampal plasticity in female mice
Authors: Loganathan Srivaishnavi , Menegaz Danusa , Delling Jan Philipp , Eder Matthias , Deussing Jan M. 
Published: October 2024

AbstractCACNA1C, coding for the α1 subunit of L-type voltage-gated calcium channel (LTCC) Cav1.2, has been associated with multiple psychiatric disorders. Clinical studies have revealed alterations in behavior as well as in brain structure and function in CACNA1C risk allele carriers. These findings are supported by rodent models of Cav1.2 deficiency, which showed increased anxiety, cognitive and social impairments as well as a shift towards active stress-coping strategies. These behavioral alterations were accompanied by functional deficits, such as reduced long-term potentiation (LTP) and an excitation/inhibition (E/I) imbalance. However, these preclinical studies are largely limited to male rodents, with few studies exploring sex-specific effects. Here, we investigated the effects of Cav1.2 deficiency in forebrain glutamatergic neurons in female conditional knockout (CKO) mice. CKO mice exhibited hyperlocomotion in a novel environment, increased anxiety-related behavior, cognitive deficits, and increased active stress-coping behavior. These behavioral alterations were neither influenced by the stage of the estrous cycle nor by the Nex/Neurod6 haploinsufficiency or Cre expression, which are intrinsically tied to the utilization of the Nex-Cre driver line for conditional inactivation of Cacna1c. In the hippocampus, Cav1.2 inactivation enhanced presynaptic paired-pulse facilitation without altering postsynaptic LTP at CA3-CA1 synapses. In addition, CA1 pyramidal neurons of female CKO mice displayed a reduction in dendritic complexity and spine density. Taken together, our findings extend the existing knowledge suggesting Cav1.2-dependent structural and functional alterations as possible mechanisms for the behavioral alterations observed in female Cav1.2-Nex mice.
FTO/IGF2BP2-mediated N6 methyladenosine modification in invasion and metastasis of thyroid carcinoma via CDH12
Authors: Chen Zuyao , Zhong Xiaolin , Xia Min , Liu Chang , Tang Weiqiang , Liu Gaohua , Yi Yan , Guo Yinping , Jiang Qingshan , Zu Xuyu , Zhong Jing 
Published: October 2024

AbstractEpigenetic reprogramming plays a critical role in cancer progression of cancer, and N6-methyladenosine (m6A) is the most common RNA modification in eukaryotes. The purpose of this study was to explore the related modification mode of m6A regulator construction and evaluate the invasion and migration of thyroid cancer. Our results showed that m6A levels were significantly increased in papillary thyroid cancer (PTC) and anaplastic thyroid cancer (ATC) samples, which may have been induced by the down-regulation of demethylase fat mass and obesity-associated gene (FTO). Moreover, FTO inhibited PTC and ATC invasion and metastasis through the epithelial-to-mesenchymal transition (EMT) pathway in vivo and in vitro. Mechanistically, an m6A-mRNA epitranscriptomic microarray showed that Cadherin 12 (CDH12) is the key target gene mediated by FTO in an m6A-dependent manner. CDH12 promotes invasion and metastasis through the EMT pathway in thyroid cancer, both in vivo and in vitro. Furthermore, we found that insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) is an important m6A reading protein, that regulates the stability of CDH12 mRNA and mediates EMT progression, thereby promoting the invasion and metastasis of PTC and ATC. Thus, FTO, IGF2BP2 and CDH12 may be effective therapeutic targets for PTC and ATC with significant invasion or distant metastasis.
The Scanning CONfoCal Ophthalmoscopy foR DIAbetic eye screening (CONCORDIA) study paper 1
Authors: Scanlon Peter H. , Gruszka-Goh Marta , Javed Ushna , Vukic Anthony , Hapeshi Julie , Chave Steve , Galsworthy Paul , Vallance Scott , Aldington Stephen J. 
Published: October 2024

Abstract
Objective
This project was to determine the performance of the Zeiss Clarus 700 (Clarus) and the Optos California (Optos) with staged mydriasis in a Diabetic Eye Screening Programme (DESP).

Methods
Trial participants were recruited from people attending appointments in DESP or Virtual Eye clinics for delayed hospital appointments. Non-mydriatic photographs from the Clarus and Optos cameras were compared to 2-field 45 degrees mydriatic digital photography (the reference standard) and mydriatic photographs compared if the non-mydriatic photos were unassessable (staged mydriasis).

Results
1573 patients were recruited. 76 individuals were withdrawn, leaving 1497 individuals (2993 eyes). For the Clarus and the Optos, the sensitivity for any retinopathy were 94.2% (95% CI: 92.9–95.3%) and 91.9% (95% CI: 90.5–93.2%) with specificities of 87.3% (95% CI: 85.4–89.0%) and 78.1% (95% CI: 75.7–80.3%) respectively. For referable DR the sensitivities for the Clarus and Optos were 86.0% (95% CI: 82.9–88.8%) and 77.6% (95% CI: 73.9–80.9%) with specificities of 92.8% (95% CI: 91.7–93.8%) and 95.4% (95% CI: 94.5–96.2%) respectively. The Clarus and Optos without mydriasis produced 100 (3.3%) and 152 (5.1%) unassessable eyes respectively, and after staged mydriasis 51 (1.7%) and 102 (3.4%) respectively with 52 (1.7%) reference standard images unassessable.

Conclusions
This study reports the performance of the Clarus and the Optos using staged mydriasis in DR screening with wider fields detecting more referable retinopathy peripherally with some reduction in sensitivity centrally for macular lesions.
Treatment regimens for optimising outcomes in patients with neovascular age-related macular degeneration
Authors: Teo Kelvin Yi Chong , Eldem Bora , Joussen Antonia , Koh Adrian , Korobelnik Jean-François , Li Xiaoxin , Loewenstein Anat , Lövestam-Adrian Monica , Navarro Rafael , Okada Annabelle A. , Pearce Ian , Rodríguez Francisco , Wong David , Wu Lihteh , Zur Dinah , Zarranz-Ventura Javier , Mitchell Paul , Chaudhary Varun , Lanzetta Paolo 
Published: October 2024

AbstractPractice patterns for neovascular age-related macular degeneration (nAMD) have evolved from the landmark registration trials of vascular endothelial growth factor (VEGF) inhibitors. Non-monthly regimens like treat-and-extend (T&E) have become popular due to their effectiveness in clinical practice. T&E regimens attempt to limit the burden of visits and treatments by allowing progressively longer treatment intervals, but in so doing, are potentially associated with the expense of treating quiescent disease. This is acceptable to many patients and their ophthalmologists but can still be problematic in the real-world. Recent studies have further refined the T&E approach by allowing for quicker and longer extension of treatment intervals when less severe disease is detected. With newer drugs offering increased durability, a shift to longer regular intervals may emerge as a new practice pattern for VEGF inhibitor therapy. This review aims to consolidate the current literature on the most effective treatment patterns and update treatment guidelines based on options that are now available. It also summarises new aspects of nAMD management that may help to further refine current practice.
Evaluating the use of large language models to provide clinical recommendations in the Emergency Department
Authors: Williams Christopher Y. K. , Miao Brenda Y. , Kornblith Aaron E. , Butte Atul J. 
Published: October 2024

AbstractThe release of GPT-4 and other large language models (LLMs) has the potential to transform healthcare. However, existing research evaluating LLM performance on real-world clinical notes is limited. Here, we conduct a highly-powered study to determine whether LLMs can provide clinical recommendations for three tasks (admission status, radiological investigation(s) request status, and antibiotic prescription status) using clinical notes from the Emergency Department. We randomly selected 10,000 Emergency Department visits to evaluate the accuracy of zero-shot, GPT-3.5-turbo- and GPT-4-turbo-generated clinical recommendations across four different prompting strategies. We found that both GPT-4-turbo and GPT-3.5-turbo performed poorly compared to a resident physician, with accuracy scores 8% and 24%, respectively, lower than physician on average. Both LLMs tended to be overly cautious in its recommendations, with high sensitivity at the cost of specificity. Our findings demonstrate that, while early evaluations of the clinical use of LLMs are promising, LLM performance must be significantly improved before their deployment as decision support systems for clinical recommendations and other complex tasks.
Lightning-induced relativistic electron precipitation from the inner radiation belt
Authors: Feinland Max , Blum Lauren W. , Marshall Robert A. , Gan Longzhi , Shumko Mykhaylo , Looper Mark 
Published: October 2024

AbstractThe Earth’s radiation belts are maintained by a number of acceleration, loss and transport mechanisms, and the electron fluxes at any given time are highly variable. Microbursts, which are rapid (sub-second) bursts of energetic electrons entering the atmosphere from the magnetosphere, are one of the key loss mechanisms controlling radiation belt fluxes. Such rapid bursts are typically observed from the outer radiation belt and driven by interactions with whistler mode chorus waves, but they can also occur in the inner belt and slot region, driven by lightning-generated whistlers. This lightning-induced electron precipitation is typically observed at 10s–100s keV, but here we present direct observations of this phenomenon at MeV energies. This unveils a coupling between near-Earth processes, such as lightning, and radiation belt processes, such as relativistic electron microbursts, bridging the gap between Earth weather and space weather.
Rapid species-level metagenome profiling and containment estimation with sylph
Authors: Shaw Jim , Yu Yun William 
Published: October 2024

AbstractProfiling metagenomes against databases allows for the detection and quantification of microorganisms, even at low abundances where assembly is not possible. We introduce sylph, a species-level metagenome profiler that estimates genome-to-metagenome containment average nucleotide identity (ANI) through zero-inflated Poisson k-mer statistics, enabling ANI-based taxa detection. On the Critical Assessment of Metagenome Interpretation II (CAMI2) Marine dataset, sylph was the most accurate profiling method of seven tested. For multisample profiling, sylph took >10-fold less central processing unit time compared to Kraken2 and used 30-fold less memory. Sylph’s ANI estimates provided an orthogonal signal to abundance, allowing for an ANI-based metagenome-wide association study for Parkinson disease (PD) against 289,232 genomes while confirming known butyrate–PD associations at the strain level. Sylph took <1 min and 16 GB of random-access memory to profile metagenomes against 85,205 prokaryotic and 2,917,516 viral genomes, detecting 30-fold more viral sequences in the human gut compared to RefSeq. Sylph offers precise, efficient profiling with accurate containment ANI estimation even for low-coverage genomes.
Cytokine profiles and their correlation with clinical and blood parameters in rheumatoid arthritis and systemic lupus erythematosus
Authors: Duarte-Delgado Nancy Paola , Segura Katherine , Gómez Oscar , Pulido Sandra , Tovar-Sánchez Catherin , Bello-Gualtero J. M. , Fernández-Ávila Daniel G. , Amado-Garzón Sandra B. , Romero-Sanchez Consuelo , Cacciatore Stefano , Rodríguez C. Luz-Stella 
Published: October 2024

AbstractThe abnormal biological activity of cytokines and their imbalance are implicated in developing rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE). Cytokine levels were measured in RA and SLE patients and compared to healthy controls using the Wilcoxon rank sum test and Kruskal–Wallis test. The relationship between cytokine levels and blood and clinical parameters was assessed using Spearman's correlation test. Compared to healthy controls, both RA and SLE patients exhibited elevated levels of GM-CSF, CX3CL1, IFN-α2, IL-12p70, IL-17A, TNF-α, IL-1β, and IFN-γ, which is evidence of their shared inflammatory signature. IL-2 levels were elevated exclusively in RA patients, while MCP-1 and IL-10 were uniquely increased in SLE patients. Notably, TNF-α showed the most significant increase in SLE patients. IL-4 was elevated in SLE patients with nephritis, correlating with IL-6, IL-10, sCD40L, and IL-8, suggesting B cell involvement in lupus nephritis. The negative correlation between CX3CL1 and TNF-α with HDL in RA and SLE respectively, highlights the potential association of these inflammatory markers with cardiovascular risk. These findings underscore the complex cytokine interplay in RA and SLE. CX3CL1 emerges as a potential therapeutic target for RA, while TNF-α and IL-4 show promise as therapeutic targets for SLE.
Using stated preference methods to design gender-affirming long-acting PrEP programs for transgender and nonbinary adults
Authors: Restar A. , Wilson-Barthes M. G. , Dusic E. , Operario D. , Galárraga O. 
Published: October 2024

AbstractIntegrating gender-affirming care with biomedical HIV prevention could help address the disproportionate HIV risk experienced by transgender and nonbinary (trans) adults. This discrete choice experiment assesses and identifies the most important programming factors influencing the decisions of trans adults to use injectable long-acting HIV pre-exposure prophylaxes (LA-PrEP). From March to April 2023 n = 366 trans adults in Washington state chose between four different choice profiles that presented hypothetical programs (each comprised of 5 attributes with 4 levels). We analyzed ranked choice responses using a mixed rank-ordered logit model for main effects. Respondents preferred to receive LA-PrEP from a gender-affirming care provider and a co-prescription for both oral and injectable hormones. Trans adults strongly favored 12-month protection and injection in the upper arm. No strong preferences emerged surrounding the type of health facility offering the gender-affirming LA-PrEP program. Our findings show that integrating and leveraging gender-affirming health systems, inclusive of medical services such as hormone therapy, with HIV biomedical products like LA-PrEP is strongly preferred and influential to trans adults’ decision to use LA-PrEP. Leveraging choice-based design experiments provides informative results for optimizing gender-affirming LA-PrEP programming tailored to trans adults.
Remote detection of water stress in cotton using a center pivot irrigation system-mounted sensor package
Authors: Sapkota Bala R. , Adams Curtis B. , Su Qiong , Ale Srinivasulu 
Published: October 2024

AbstractMuch research has been invested in infrared temperature (IRT)-based methods for cotton (Gossypium hirsutism L.) water stress detection using in-field sensors, but adoption of these is low, perhaps due to logistical challenges. Alternatively, the Water Deficit Index (WDI) was developed for crop water stress assessment using remote sensors not embedded in the canopy. The objective of this research was to evaluate the performance of a sensor package—including modern IRT and normalized difference vegetation index (NDVI) sensors facing downward at 45˚, and a mini weather station—attached unintrusively to a center pivot irrigation system for detecting cotton water stress using WDI. Sensor packages were evaluated in a two-year field study that included four irrigation treatments (0, 30, 60, and 90% ET replacement) and in two production cotton fields. Overall, the tested system was effective at distinguishing crop water stress among irrigation rates. Comparison of the results to a ground-based station and simulations indicated that WDI overestimated water stress at the highest irrigation rate, but performed well otherwise. Accuracy of the system could be improved by measuring canopy coverage (Fc) from the same vantage point as the IRT and NDVI sensors (from the pivot, downward at a 45˚ angle).