bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ecological factors drive natural selection pressure of avian aryl hydrocarbon receptor 1 genotypes
Authors: Hwang Ji-Hee , Park Jin-Young , Park Hae-Jeong , Bak Su-Min , Hirano Masashi , Iwata Hisato , Park Young-Suk , Kim Eun-Young 
Published: June 2016

AbstractThe aryl hydrocarbon receptor (AHR) mediates dioxin toxicities. Several studies have suggested that two amino acid residues corresponding to the 324th and 380th positions in the ligand binding domain (LBD) of the chicken AHR1 (Ile_Ser as high sensitivity, Ile_Ala as moderate sensitivity, and Val_Ala as low sensitivity), could be an important factor determining dioxin sensitivity in avian species. Here, we analyzed the association between ecological factors and AHR1 LBD genotypes of 113 avian species. Cluster analyses showed that 2 major clusters and sub-clusters of the cluster 3 were associated with specific AHR1 genotypes depending on the food, habitat, and migration of the animal. The majority of the species with Ile_Ala type were the Passeriformes, which are omnivorous or herbivorous feeders in the terrestrial environment. The species with Val_Ala type was primarily composed of raptors and waterbirds, which have been exposed to naturally occurring dioxins. An in vitro reporter gene assay revealed that the sensitivity to a natural dioxin, 1,3,7-tribromodibenzo-p-dioxin was in the order of Ile_Ser > Ile_Ala > Val_Ala. These results suggest that ecological factors related to the exposure of natural dioxins contribute to natural selection of the avian AHR1 genotype, which consequently leads to different sensitivity to man-made dioxins.
Inference of causality in epidemics on temporal contact networks
Authors: Braunstein Alfredo , Ingrosso Alessandro 
Published: June 2016

AbstractInvestigating into the past history of an epidemic outbreak is a paramount problem in epidemiology. Based on observations about the state of individuals, on the knowledge of the network of contacts and on a mathematical model for the epidemic process, the problem consists in describing some features of the posterior distribution of unobserved past events, such as the source, potential transmissions, and undetected positive cases. Several methods have been proposed for the study of these inference problems on discrete-time, synchronous epidemic models on networks, including naive Bayes, centrality measures, accelerated Monte-Carlo approaches and Belief Propagation. However, most traced real networks consist of short-time contacts on continuous time. A possibility that has been adopted is to discretize time line into identical intervals, a method that becomes more and more precise as the length of the intervals vanishes. Unfortunately, the computational time of the inference methods increase with the number of intervals, turning a sufficiently precise inference procedure often impractical. We show here an extension of the Belief Propagation method that is able to deal with a model of continuous-time events, without resorting to time discretization. We also investigate the effect of time discretization on the quality of the inference.
Spectral properties of bacteriophytochrome AM1_5894 in the chlorophyll d-containing cyanobacterium Acaryochloris marina
Authors: Loughlin Patrick C. , Duxbury Zane , Mugerwa Tendo T. Mukasa , Smith Penelope M. C. , Willows Robert D. , Chen Min 
Published: June 2016

AbstractAcaryochloris marina, a unicellular oxygenic photosynthetic cyanobacterium, has uniquely adapted to far-red light-enriched environments using red-shifted chlorophyll d. To understand red-light use in Acaryochloris, the genome of this cyanobacterium was searched for red/far-red light photoreceptors from the phytochrome family, resulting in identification of a putative bacteriophytochrome AM1_5894. AM1_5894 contains three standard domains of photosensory components as well as a putative C-terminal signal transduction component consisting of a histidine kinase and receiver domain. The photosensory domains of AM1_5894 autocatalytically assemble with biliverdin in a covalent fashion. This assembled AM1_5894 shows the typical photoreversible conversion of bacterial phytochromes with a ground-state red-light absorbing (Pr) form with λBV max[Pr] 705 nm, and a red-light inducible far-red light absorbing (Pfr) form with λBV max[Pfr] 758 nm. Surprisingly, AM1_5894 also autocatalytically assembles with phycocyanobilin, involving photoreversible conversion of λPCB max[Pr] 682 nm and λPCB max[Pfr] 734 nm, respectively. Our results suggest phycocyanobilin is also covalently bound to AM1_5894, while mutation of a cysteine residue (Cys11Ser) abolishes this covalent binding. The physiological function of AM1_5894 in cyanobacteria containing red-shifted chlorophylls is discussed.
A Novel Universal Detection Agent for Time-Gated Luminescence Bioimaging
Authors: Sayyadi Nima , Care Andrew , Connally Russell E. , Try Andrew C. , Bergquist Peter L. , Sunna Anwar 
Published: June 2016

AbstractLuminescent lanthanide chelates have been used to label antibodies in time-gated luminescence (TGL) bioimaging. However, it is a challenging task to label directly an antibody with lanthanide-binding ligands and achieve control of the target ligand/protein ratios whilst ensuring that affinity and avidity of the antibody remain uncompromised. We report the development of a new indirect detection reagent to label antibodies with detectable luminescence that circumvents this problem by labelling available lysine residues in the linker portion of the recombinant fusion protein Linker-Protein G (LPG). Succinimide-activated lanthanide chelating ligands were attached to lysine residues in LPG and Protein G (without Linker) and the resulting Luminescence-Activating (LA-) conjugates were compared for total incorporation and conjugation efficiency. A higher and more efficient incorporation of ligands at three different molar ratios was observed for LPG and this effect was attributed to the presence of eight readily available lysine residues in the linker region of LPG. These Luminescence-Activating (LA-) complexes were subsequently shown to impart luminescence (upon formation of europium(III) complexes) to cell-specific antibodies within seconds and without the need for any complicated bioconjugation procedures. The potential of this technology was demonstrated by direct labelling of Giardia cysts and Cryptosporidium oocysts in TGL bioimaging.
Heterogeneously Assembled Metamaterials and Metadevices via 3D Modular Transfer Printing
Authors: Lee Seungwoo , Kang Byungsoo , Keum Hohyun , Ahmed Numair , Rogers John A. , Ferreira Placid M. , Kim Seok , Min Bumki 
Published: June 2016

AbstractMetamaterials have made the exotic control of the flow of electromagnetic waves possible, which is difficult to achieve with natural materials. In recent years, the emergence of functional metadevices has shown immense potential for the practical realization of highly efficient photonic devices. However, complex and heterogeneous architectures that enable diverse functionalities of metamaterials and metadevices have been challenging to realize because of the limited manufacturing capabilities of conventional fabrication methods. Here, we show that three-dimensional (3D) modular transfer printing can be used to construct diverse metamaterials in complex 3D architectures on universal substrates, which is attractive for achieving on-demand photonic properties. Few repetitive processing steps and rapid constructions are additional advantages of 3D modular transfer printing. Thus, this method provides a fascinating route to generate flexible and stretchable 2D/3D metamaterials and metadevices with heterogeneous material components, complex device architectures, and diverse functionalities.
On the Computational Power of Spiking Neural P Systems with Self-Organization
Authors: Wang Xun , Song Tao , Gong Faming , Zheng Pan 
Published: June 2016

AbstractNeural-like computing models are versatile computing mechanisms in the field of artificial intelligence. Spiking neural P systems (SN P systems for short) are one of the recently developed spiking neural network models inspired by the way neurons communicate. The communications among neurons are essentially achieved by spikes, i. e. short electrical pulses. In terms of motivation, SN P systems fall into the third generation of neural network models. In this study, a novel variant of SN P systems, namely SN P systems with self-organization, is introduced and the computational power of the system is investigated and evaluated. It is proved that SN P systems with self-organization are capable of computing and accept the family of sets of Turing computable natural numbers. Moreover, with 87 neurons the system can compute any Turing computable recursive function, thus achieves Turing universality. These results demonstrate promising initiatives to solve an open problem arisen by Gh Păun.
Contagious risk taking: social information and context influence wild jackdaws’ responses to novelty and risk
Authors: Greggor Alison L. , McIvor Guillam E. , Clayton Nicola S. , Thornton Alex 
Published: June 2016

AbstractAlthough wild animals increasingly encounter human-produced food and objects, it is unknown how they learn to discriminate beneficial from dangerous novelty. Since social learning allows animals to capitalize on the risk-taking of others and avoid endangering themselves, social learning should be used around novel and unpredictable stimuli. However, it is unclear whether animals use social cues equally around all types of novelty and at all times of year. We assessed whether wild, individually marked jackdaws—a highly neophobic, yet adaptable species—are equally influenced by social cues to consume novel, palatable foods and to approach a startling object. We conducted these tests across two seasons and found that in both seasons observers were more likely to consume novel foods after seeing a demonstrator do so. In contrast, observers only followed the demonstrator in foraging next to the object during breeding season. Throughout the year more birds were wary of consuming novel foods than wary of approaching the object, potentially leading to jackdaws’ greater reliance on social information about food. Jackdaws’ dynamic social cue usage demonstrates the importance of context in predicting how social information is used around novelty and potentially indicates the conditions that facilitate animals’ adjustment to anthropogenic disturbance.
Perceived visual time depends on motor preparation and direction of hand movements
Authors: Tomassini Alice , Morrone Maria Concetta 
Published: June 2016

AbstractPerceived time undergoes distortions when we prepare and perform movements, showing compression and/or expansion for visual, tactile and auditory stimuli. However, the actual motor system contribution to these time distortions is far from clear. In this study we investigated visual time perception during preparation of isometric contractions and real movements of the hand in two different directions (right/left). Comparable modulations of visual event-timing are found in the isometric and in the movement condition, excluding explanations based on movement-induced sensory masking or attenuation. Most importantly and surprisingly, visual time depends on the movement direction, being expanded for hand movements pointing away from the body and compressed in the other direction. Furthermore, the effect of movement direction is not constant, but rather undergoes non-monotonic modulations in the brief moments preceding movement initiation. Our findings indicate that time distortions are strongly linked to the motor system and they may be unavoidable consequences of the mechanisms subserving sensory-motor integration.
Hypersensitivity reactions to heparins
Authors: Gonzalez-Delgado Purificación , Fernandez Javier 
Published: June 2016

Purpose of review
This article provides an update on hypersensitivity reactions to heparins and novel oral anticoagulants, with special emphasis on diagnostic methods and management of patients.

Recent findings
Although heparins are drugs widely used, hypersensitivity reactions are uncommon. Cutaneous delayed hypersensitivity reactions after subcutaneous administration affects up to 7.5% of patients. Heparin-induced thrombocytopenia is another unusual but severe condition in which early recognition is crucial. Immediate hypersensitivity reactions to heparins have been also reported, but with the novel oral anticoagulants are much more uncommon, although reports of exanthemas have been notified.
Skin tests and subcutaneous provocation test are useful tools in the diagnosis of hypersensitivity reactions, except in heparin-induced thrombocytopenia in which biopsy of lesional skin and in-vitro tests are the modalities of choice to confirm the diagnosis.
Management of hypersensitivity reactions includes finding an alternative depending on the type of reaction. Fondaparinux and novel oral anticoagulants may be safe alternatives.

Summary
Delayed skin lesions after subcutaneous heparin are the most common type of hypersensitivity reactions, followed by life-threatening heparin-induced thrombocytopenia. Immediate reactions are uncommon. Allergologic studies may be useful to find an alternative option in patients with skin lesions in which heparin-induced thrombocytopenia has been previously excluded, as well as in heparin immediate reactions.
Large local reactions to insect envenomation
Authors: Carlson John , Golden David B.K. 
Published: June 2016

Purpose of review
Insect stings often induce large local reactions (LLRs) that result in morbidity. These reactions do have an immunologic basis; however, patients presenting with LLRs should be managed differently than those with systemic allergic reactions, as described in this review.

Recent findings
Morbidity results from the inflammation itself along with the iatrogenic consequences of treatment. The prescription of antihistamine medications and the use of antibiotics are generally not indicated for patients with LLRs because of the risks/side-effects of these medications and the low probability of benefit. Some patients are also concerned over the possibility that a future sting will evolve into a life-threatening reaction. Although these reactions do involve IgE, patients are not at sufficient risk to warrant prescription of autoinjectable epinephrine. Venom-specific immunotherapy can be considered when LLRs are frequent and associated with significant impairment.

Summary
Clinicians can reduce morbidity from LLRs by reassuring the patients, avoiding medications that result in side-effects when they are not indicated, and referring to an allergist when there are additional concerns, such as frequent impairment.
Cutaneous lupus erythematosus: updates on pathogenesis and associations with systemic lupus
Authors: Stannard Jasmine N. , Kahlenberg J. Michelle 
Published: June 2016

Purpose of review
Cutaneous lupus erythematosus (CLE) is a common manifestation among systemic lupus patients. There are no U.S. Food and Drug Administration approved therapies for CLE, and these lesions are frequently disfiguring and refractory to treatment. The present review will cover the recent inroads made into understanding the mechanisms behind CLE lesions and discuss promising therapeutic developments.

Recent findings
The definition of cutaneous lupus is being refined to facilitate diagnostic and research protocols. Research into the pathogenesis of CLE is accelerating, and discoveries are now identifying genetic and epigenetic changes which may predispose to particular disease manifestations. Furthermore, unique features of disease subtypes are being defined. Murine work supports a connection between cutaneous inflammation and systemic lupus disease activity. Importantly, human trials of type I interferon blockade hold promise for improving our treatment armamentarium for refractory CLE lesions.

Summary
Continued research to understand the mechanisms driving CLE will provide new methods for prevention and treatment of cutaneous lesions. These improvements may also have important effects on systemic disease activity, and thus, efforts to understand this link should be supported.
Outcomes of Isolated Varus Derotational Osteotomy in Children With Cerebral Palsy Hip Dysplasia and Predictors of Resubluxation
Authors: Chang Frank M. , May Allison , Faulk Leonard W. , Flynn Katherine , Miller Nancy H. , Rhodes Jason T. , Zhaoxing Pan , Novais Eduardo N. 
Published: June 2016

Background:
The appropriate intervention for hip subluxation or dislocation in children affected by cerebral palsy (CP) remains controversial. The purpose of this retrospective study was to report radiographic and clinical outcomes following isolated femoral varus derotational osteotomy (VDRO) in children with CP hip dysplasia. Risk factors for resubluxation and avascular necrosis (AVN) were also examined.

Methods:
A cohort of 100 patients (199 hips) with CP treated with isolated VDRO between 2003 and 2009 was reviewed. All but 1 patient received bilateral surgery. Patients were followed for an average of 5.4 years (range, 1.03 to 10.20 y). Anteroposterior pelvic radiographs were used to assess migration percentage (MP), Shenton’s line, and presence of AVN. Resubluxation was defined as a postoperative break in Shenton’s line. Radiographic outcomes and risk analysis was performed in the 91 subjects (179 hips) with radiographic follow-up >1 year.

Results:
Significant improvement was observed in MP, and all hips had a reconstituted Shenton’s line following surgery. Over the course of follow-up, 16% of hips were noted to have a repeat break in Shenton’s line. Univariate risk analysis showed preoperative MP, Gross Motor Function Classification System (GMFCS) level, and age at surgery were risk factors for a recurrent line break. Preoperative MP and GMFCS level were found to be predictors of resubluxation in multivariate analysis. AVN was detected in 10 hips (5.7%). GMFCS level V patients were more at risk for resubluxation, but less at risk for AVN when compared with ambulatory (GMFCS I/II/II) patients and GMFCS level IV patients.

Conclusions:
Performing a VDRO without additional procedures provided a stable and concentrically reduced hip joint in this population of children with CP. Attention should be paid to initial ambulatory status during the postoperative period. Concomitant procedures such as pelvic osteotomy should be considered for patients of GMFCS level IV and V, as these patients were more at risk for recurrent subluxation.

Level of Evidence:
Level III—retrospective comparative study.
Radiation Exposure During Operative Fixation of Pediatric Supracondylar Humerus Fractures: Is Lead Shielding Necessary?
Authors: Martus Jeffrey E. , Hilmes Melissa A. , Grice Jared V. , Stutz Christopher M. , Schoenecker Jonathan G. , Lovejoy Steven A. , Mencio Gregory A. 
Published: June 2016

Background:
Factors that impact radiation exposure during operative fixation of pediatric supracondylar humerus (SCH) fractures have been investigated; however, no studies have measured the equivalent dose at the patient’s radiosensitive organs. Our hypothesis was that intraoperative fluoroscopy exposes pediatric patients to a significant radiation load and lead shielding of radiosensitive organs is important. The goal of the study was to quantify the patient’s radiation exposure during the procedure by measuring the radiation load at the thyroid and gonads.

Methods:
A prospective quality improvement project of radiation exposure during percutaneous fixation of isolated SCH fractures was performed over a 4-week period. The c-arm image intensifier was used as the operating table and radiation dosimeters were positioned over the thyroid and gonadal lead shields. Fluoroscopy times were recorded, doses were calculated, and the dosimeters were analyzed. To assure that the prospective cohort was representative of a larger population of SCH fractures, demographics and fluoroscopy time of the prospective cohort were compared with a 12-month retrospective cohort in which dosimetry was not performed.

Results:

Prospective cohort—18 patients with type 2 (8) and type 3 (10) fractures were prospectively studied with intraoperative measurement of thyroid and gonadal radiation equivalent doses. Mean age was 4.9 years (1.9 to 9.5 y) and mean weight was 21.4 kg (13.1 to 33.5 kg). Mean fluoroscopy time was 65.0 seconds (25.3 to 168.4 s), and absorbed skin dose at the elbow was 0.47 mGy (0.18 to 1.21 mGy). The radiation dosimeters overlying the thyroid and gonads measured minimal radiation indicating equivalent doses of <0.01 mSv for all patients in the prospective cohort.

Retrospective cohort—163 patients with type 2 (60) and type 3 (103) fractures were retrospectively studied. The mean age was 5.5 years (0.02 to 13.7 y) and weight was 21.6 kg (2.0 to 71.9 kg). Mean fluoroscopy time was 74.1 seconds (10.2 to 288.9 s), and absorbed skin dose at the elbow was 0.53 mGy (0.07 to 2.07 mGy).
There were no statistically significant differences between the cohorts.

Conclusions:
The smaller prospective cohort had fluoroscopy times and radiation doses that were not statistically different from the larger retrospective cohort, suggesting that the dosimeter measurements are representative of intraoperative radiation exposure during fixation of pediatric SCH fractures. The equivalent dose to the thyroid and gonads was minimal and approximates daily background radiation. Shielding of radiosensitive organs is appropriate when practical to minimize cumulative lifetime radiation exposure, particularly in smaller patients and when longer fluoroscopy times are anticipated.

Level of Evidence:
Level 2.