bluuebunny/crossref_metadata_2025_split huggingface dataset:
Leptin resistance was involved in susceptibility to overweight in the striped hamster re-fed with high fat diet
Authors: Zhao Ying , Chen Li-Bing , Mao Si-Si , Min Hong-Xia , Cao Jing 
Published: January 2018

AbstractFood restriction (FR) is the most commonly used intervention to prevent the overweight. However, the lost weight is usually followed by “compensatory growth” when FR ends, resulting in overweight. The present study was aimed to examining the behavior patterns and hormones mechanisms underpinning the over-weight. Energy budget and body fat content, and several endocrine markers related to leptin signals were examined in the striped hamsters under 20% FR refed by either low-fat diet (LF group) or high-fat diet (HF group). Body mass and fat content significantly regained when FR ended, and the hamsters in HF group showed 49.1% more body fat than in LF group (P < 0.01). Digestive energy intake was higher by 20.1% in HF than LF group, while metabolic thermogenesis and behavior patterns did not differed between the two groups. Gene expression of leptin receptor and anorexigenic peptides of pro-opiomelanocortin and cocaine- and amphetamine-regulated transcript in hypothalamus were significantly up-regulated in LF group, but down-regulated in HF group. It suggests that effective leptin signals to the brain were involved in attenuation of hyperphagia in hamsters refed with LF. However, “leptin resistance” probably occurred in hamsters refed with HF, which impaired the control of hyperphagia, resulting in development of over-weight.
PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli
Authors: Tsai Ming-Ju , Wang Jyun-Rong , Yang Chi-Dung , Kao Kuo-Ching , Huang Wen-Lin , Huang Hsi-Yuan , Tseng Ching-Ping , Huang Hsien-Da , Ho Shinn-Ying 
Published: January 2018

AbstractCyclic AMP receptor protein (CRP), a global regulator in Escherichia coli, regulates more than 180 genes via two roles: activation and repression. Few methods are available for predicting the regulatory roles from the binding sites of transcription factors. This work proposes an accurate method PredCRP to derive an optimised model (named PredCRP-model) and a set of four interpretable rules (named PredCRP-ruleset) for predicting and analysing the regulatory roles of CRP from sequences of CRP-binding sites. A dataset consisting of 169 CRP-binding sites with regulatory roles strongly supported by evidence was compiled. The PredCRP-model, using 12 informative features of CRP-binding sites, and cooperating with a support vector machine achieved a training and test accuracy of 0.98 and 0.93, respectively. PredCRP-ruleset has two activation rules and two repression rules derived using the 12 features and the decision tree method C4.5. This work further screened and identified 23 previously unobserved regulatory interactions in Escherichia coli. Using quantitative PCR for validation, PredCRP-model and PredCRP-ruleset achieved a test accuracy of 0.96 (=22/23) and 0.91 (=21/23), respectively. The proposed method is suitable for designing predictors for regulatory roles of all global regulators in Escherichia coli. PredCRP can be accessed at https://github.com/NctuICLab/PredCRP.
Phantom Acupuncture Induces Placebo Credibility and Vicarious Sensations: A Parallel fMRI Study of Low Back Pain Patients
Authors: Makary Meena M. , Lee Jeungchan , Lee Eunyoung , Eun Seulgi , Kim Jieun , Jahng Geon-Ho , Kim Kiok , Youn You-Suk , Lee Jun-Hwan , Park Kyungmo 
Published: January 2018

AbstractAlthough acupuncture is an effective therapeutic intervention for pain reduction, the exact difference between real and sham acupuncture has not been clearly understood because a somatosensory tactile component is commonly included in the existing sham acupuncture protocols. In an event-related fMRI experiment, we implemented a novel form of sham acupuncture,phantom acupuncture, that reproduces the acupuncture needling procedure without somatosensory tactile stimulation while maintaining the credibility of the acupuncture treatment context. Fifty-six non-specific low back pain patients received either real (REAL) or phantom (PHNT) acupuncture stimulation in a parallel group study. The REAL group exhibited greater activation in the posterior insula and anterior cingulate cortex, reflecting the needling-specific components of acupuncture. We demonstrated that PHNT could be delivered credibly. Interestingly, the PHNT-credible group exhibited bilateral activation in SI/SII and also reported vicarious acupuncture sensations without needling stimulation. The PHNT group showed greater activation in the bilateral dorsolateral/ventrolateral prefrontal cortex (dlPFC/vlPFC). Moreover, the PHNT group exhibited significant pain reduction, with a significant correlation between the subjective fMRI signal in the right dlPFC/vlPFC and a score assessing belief in acupuncture effectiveness. These results support an expectation-related placebo analgesic effect on subjective pain intensity ratings, possibly mediated by right prefrontal cortex activity.
House dust mite induced allergic airway disease is attenuated in CD11ccreIL-4Rα−/l°x mice
Authors: Nieuwenhuizen Natalie Eva , Kirstein Frank , Hoving Jennifer Claire , Brombacher Frank 
Published: January 2018

AbstractThe precise mechanisms leading to development of T helper type (Th)2-driven allergic responses are unknown. We aimed to determine how IL-4 receptor alpha (IL-4Rα) signaling on CD11c+cells influences allergen-induced Th2 responses in mice. CD11ccreIL-4Rα−/l°xmice, deficient in IL-4Rα on dendritic cells and alveolar macrophages, were compared to IL-4Rα−/l°xlittermate controls in models of allergic airway disease induced by OVA/alum, OVA alone or house dust mite. Cytokine responses, eosinophil and neutrophil infiltration into the lungs, airway hyperreactivity and mucus hypersecretion were evaluated after allergen challenge. In the OVA/alum model, CD11ccreIL-4Rα−/loxmice had similar airway hyperreactivity, eosinophil infiltration, Th2-type cytokine production and mucus hypersecretion to littermate controls. When alum was omitted during sensitization, CD11ccreIL-4Rα−/loxmice had similar airway hyperreactivity and mucus secretion but reduced Th2-type cytokine production and eosinophils, suggesting alum overrides the requirement for IL-4Rα signaling on CD11c+cells in enhancing Th2-type responses. In the house dust mite model, CD11ccreIL-4Rα−/loxmice showed similar mucus secretion, but reduced Th2 responses, eosinophils, neutrophils and airway hyperreactivity, unlike previously tested LysMcreIL-4Rα−/loxmice, which lack IL-4Rα on alveolar macrophages but not on dendritic cells. Therefore, our results indicate that IL-4Rα signaling on dendritic cells promotes allergen-induced Th2 responses and eosinophil infiltration into the lung.
Alanine mutation of the catalytic sites of Pantothenate Synthetase causes distinct conformational changes in the ATP binding region
Authors: Pandey Bharati , Grover Sonam , Goyal Sukriti , Kumari Anchala , Singh Aditi , Jamal Salma , Kaur Jagdeep , Grover Abhinav 
Published: January 2018

AbstractThe enzyme Pantothenate synthetase (PS) represents a potential drug target in Mycobacterium tuberculosis. Its X-ray crystallographic structure has demonstrated the significance and importance of conserved active site residues including His44, His47, Asn69, Gln72, Lys160 and Gln164 in substrate binding and formation of pantoyl adenylate intermediate. In the current study, molecular mechanism of decreased affinity of the enzyme for ATP caused by alanine mutations was investigated using molecular dynamics (MD) simulations and free energy calculations. A total of seven systems including wild-type + ATP, H44A + ATP, H47A + ATP, N69A + ATP, Q72A + ATP, K160A + ATP and Q164A + ATP were subjected to 50 ns MD simulations. Docking score, MM-GBSA and interaction profile analysis showed weak interactions between ATP (substrate) and PS (enzyme) in H47A and H160A mutants as compared to wild-type, leading to reduced protein catalytic activity. However, principal component analysis (PCA) and free energy landscape (FEL) analysis revealed that ATP was strongly bound to the catalytic core of the wild-type, limiting its movement to form a stable complex as compared to mutants. The study will give insight about ATP binding to the PS at the atomic level and will facilitate in designing of non-reactive analogue of pantoyl adenylate which will act as a specific inhibitor for PS.
Incorporation of iloprost in phospholipase-resistant phospholipid scaffold enhances its barrier protective effects on pulmonary endothelium
Authors: Oskolkova Olga , Sarich Nicolene , Tian Yufeng , Gawlak Grzegorz , Meng Fanyong , Bochkov Valery N. , Berdyshev Evgeny , Birukova Anna A. , Birukov Konstantin G. 
Published: January 2018

AbstractCorrection of barrier dysfunction and inflammation in acute lung injury (ALI) represents an important problem. Previous studies demonstrate barrier-protective and anti-inflammatory effects of bioactive lipid prostacyclin and its stable analog iloprost (ILO). We generated a phospholipase resistant synthetic phospholipid with iloprost attached at the sn-2 position (ILO-PC) and investigated its biological effects. In comparison to free ILO, ILO-PC caused sustained endothelial cell (EC) barrier enhancement, linked to more prolonged activation of Rap1 and Rac1 GTPases and their cytoskeletal and cell junction effectors: cortactin, PAK1, p120-catenin and VE-cadherin. ILO and ILO-PC equally efficiently suppressed acute, Rho GTPase-dependent EC hyper-permeability caused by thrombin. However, ILO-PC exhibited more sustained barrier-protective and anti-inflammatory effects in the model of chronic EC dysfunction caused by bacterial wall lipopolysacharide (LPS). ILO-PC was also more potent inhibitor of NFκB signaling and lung vascular leak in the murine model of LPS-induced ALI. Treatment with ILO-PC showed more efficient ALI recovery over 3 days after LPS challenge than free ILO. In conclusion, this study describes a novel synthetic phospholipid with barrier-enhancing and anti-inflammatory properties superior to existing prostacyclin analogs, which may be used as a prototype for future development of more efficient treatment for ALI and other vascular leak syndromes.
Altered power spectral density in the resting-state sensorimotor network in patients with myotonic dystrophy type 1
Authors: Park Jin-Sung , Seo Jeehye , Cha Hyunsil , Song Hui-Jin , Lee Sang-Hoon , Jang Kyung Eun , Lee Hui Joong , Park Juyoung , Lee Ho-Won , Chang Yongmin 
Published: January 2018

AbstractMyotonic dystrophy type 1 (DM1) is a multisystemic disease that involves the brain with several neurological symptoms. Although there were few imaging studies on DM1, no studies have investigated functional alterations in the sensorimotor network at rest in patients with DM1. In the current study, a power spectral density (PSD) analysis of resting-state fMRI data was performed to assess possible alteration in spontaneous neural activity of the sensorimotor network in patients with DM1. Compared to healthy controls, patients with DM1 showed higher PSD responses in the orbitofrontal cortex, parahippocampus and basal ganglia (correctedP < 0.05). Patients with DM1 showed higher PSD responses in white matter structures associated with motor function (correctedP < 0.05). Furthermore, correlation analysis indicated that the brain regions showing PSD differences were correlated with measures of motor performance (P < 0.05). In gray matter, our findings suggest that motor disability in DM1 is not an isolated deterioration of the motor power but a multimodal dysfunction that also involves the visual system. In addition, the widespread PSD alteration in white matter structures suggest that motor deficits in DM1 involve motor movement structures as well as structures important for its coordination and regulation.
Methods and extractants to evaluate silicon availability for sugarcane
Authors: Crusciol Carlos Alexandre Costa , de Arruda Dorival Pires , Fernandes Adalton Mazetti , Antonangelo João Arthur , Alleoni Luís Reynaldo Ferracciú , Nascimento Carlos Antonio Costa do , Rossato Otávio Bagiotto , McCray James Mabry 
Published: January 2018

AbstractThe correct evaluation of silicon (Si) availability in different soil types is critical in defining the amount of Si to be supplied to crops. This study was carried out to evaluate two methods and five chemical Si extractants in clayey, sandy-loam, and sandy soils cultivated with sugarcane (Saccharum spp. hybrids). Soluble Si was extracted using two extraction methods (conventional and microwave oven) and five Si extractants (CaCl2, deionized water, KCl, Na-acetate buffer (pH 4.0), and acetic acid). No single method and/or extractant adequately estimated the Si availability in the soils. Conventional extraction with KCl was no more effective than other methods in evaluating Si availability; however, it had less variation in estimating soluble Si between soils with different textural classes. In the clayey and sandy soils, the Na-acetate buffer (pH 4.0) and acetic acid were effective in evaluating the Si availability in the soil regardless of the extraction methods. The extraction with acetic acid using the microwave oven, however, overestimated the Si availability. In the sandy-loam soil, extraction with deionized water using the microwave oven method was more effective in estimating the Si availability in the soil than the other extraction methods.
Large-scale semi-arid afforestation can enhance precipitation and carbon sequestration potential
Authors: Yosef Gil , Walko Robert , Avisar Roni , Tatarinov Fedor , Rotenberg Eyal , Yakir Dan 
Published: January 2018

AbstractAfforestation is an important approach to mitigate global warming. Its complex interactions with the climate system, however, makes it controversial. Afforestation is expected to be effective in the tropics where biogeochemical and biogeophysical effects act in concert; however, its potential in the large semi-arid regions remains insufficiently explored. Here, we use a Global Climate Model to provide a process-based demonstration that implementing measured characteristics of a successful semi-arid afforestation system (2000 ha, ~300 mm mean annual precipitation) over large areas (~200 million ha) of similar precipitation levels in the Sahel and North Australia leads to the weakening and shifting of regional low-level jets, enhancing moisture penetration and precipitation (+0.8 ± 0.1 mm d−1 over the Sahel and +0.4 ± 0.1 mm d−1 over North Australia), influencing areas larger than the original afforestation. These effects are associated with increasing root depth and surface roughness and with decreasing albedo. This results in enhanced evapotranspiration, surface cooling and the modification of the latitudinal temperature gradient. It is estimated that the carbon sequestration potential of such large-scale semi-arid afforestation can be on the order of ~10% of the global carbon sink of the land biosphere and would overwhelm any biogeophysical warming effects within ~6 years.
Procalcitonin as a Biomarker for Malignant Cerebral Edema in Massive Cerebral Infarction
Authors: Zhang Yan , Liu Gang , Wang Yuan , Su Yingying , Leak Rehana K. , Cao Guodong 
Published: January 2018

AbstractThe objective of this study is to explore whether procalcitonin (PCT) can serve as an early biomarker of malignant cerebral edema in patients with massive cerebral infarction (MCI). Ninety-three patients with acute MCI were divided into death or survival groups based on whether they died or survived within 1 week of cerebral herniation. Differences in laboratory parameters between these two groups were analyzed by univariate analysis, followed by multivariate logistic regression analyses if the influencing factors were significantly different. Compared with the survival group, the patients in the death group had a larger cerebral infarct area, higher body temperature, neutrophil counts, PCT level, and neuron-specific enolase (NSE) level within 48 h of onset. Multivariate logistic regression analyses revealed an odds ratio (OR) of 1.830 or 1.235 for PCT and neutrophil counts respectively, suggesting that PCT and neutrophil counts are two independent risk factors for death in MCI. The area under receiver operating characteristic (ROC) curve was 0.754 for PCT, larger than that for neutrophil counts. Thus, both serum PCT levels and neutrophil counts can be used as biomarkers to predict malignant cerebral edema at the early stages after MCI, but PCT levels are superior predictors of malignant cerebral edema.
Fumarate-based metal-organic frameworks as a new platform for highly selective removal of fluoride from brick tea
Authors: Ke Fei , Peng Chuanyi , Zhang Tian , Zhang Mengran , Zhou Chengyan , Cai Huimei , Zhu Junfa , Wan Xiaochun 
Published: January 2018

AbstractAdsorption and removal of fluoride from brick tea is very important but challenging. In this work, two fumarate-based metal-organic frameworks (MOFs) were synthesized for the selective removal of fluoride from brick tea infusion. MOFs were examined for adsorption time, effect of dose, and uptake capacity at different initial concentrations and temperatures. Remarkably, over 80% fluoride removal was achieved by MOF-801 within 5 min at room temperature, while no significant adsorption occurred for the catechins and caffeine in the brick tea infusion. Further, with the use of the Langmuir equation, the maximum fluoride uptake capacity for the nontoxic calcium fumarate (CaFu) MOF was calculated to be as high as 166.11 mg g−1 at 373 K. As observed from FTIR, EDX and XPS results, hydroxyl group in MOFs were substituted by fluoride. This work demonstrates that the novel fumarate-based MOFs are promising materials for the selective removal of fluoride from brick tea infusion.
MicroRNA-145-5p and microRNA-320a encapsulated in endothelial microparticles contribute to the progression of vasculitis in acute Kawasaki Disease
Authors: Nakaoka Hideyuki , Hirono Keiichi , Yamamoto Seiji , Takasaki Ichiro , Takahashi Kei , Kinoshita Koshi , Takasaki Asami , Nishida Naonori , Okabe Mako , Ce Wang , Miyao Nariaki , Saito Kazuyoshi , Ibuki Keijiro , Ozawa Sayaka , Adachi Yuichi , Ichida Fukiko 
Published: January 2018

AbstractKawasaki Disease (KD) is an acute inflammatory disease that takes the form of systemic vasculitis. Endothelial microparticles (EMPs) have been recognized as an important transcellular delivery system. We hypothesized whether EMPs are involved in vasculitis in acute KD. Fifty patients with acute KD were enrolled, divided into two subgroups: those with coronary artery lesions (CAL) (n = 5) and those without CAL (NCAL) (n = 45). EMPs were measured using flow cytometry, and microRNA (miR) expression profiling was performed by microRNA array. The percentage of EMPs in acute KD was significantly higher than in controls (P < 0.0001). EMPs in patients with CAL rapidly increased after the initial treatment, and was significantly higher than those in NCAL (P < 0.001). In patients with CAL, we identified 2 specific miRs encapsulated in EMPs, hsa-miR-145-5p and hsa-miR-320a, which are predicted to affect monocyte function using in silico analysis, and were demonstrated to upregulate inflammatory cytokine mRNAs in THP-1 monocytes. In situ hybridization confirmed that hsa-miR-145-5p was preferentially expressed in CAL. EMPs may serve as a sensitive marker for the severity of vasculitis in acute KD. Moreover, these 2 specific miRs encapsulated in EMPs might be involved in inflammatory cytokine regulation and the pathogenesis of vasculitis in acute KD.
Interaction of smoking and metabolic syndrome in increasing the recurrence risk of colorectal cancer in a Chinese male cohort: a retrospective study
Authors: Chen Da-Zhi , Ji Fei-yang , Xu Qiao-Mai , Wu Xiao-Xin , Cai Chao , Zhang Ling-Jian , Li Lan-Juan 
Published: January 2018

AbstractWhether smoking and metabolic syndrome (MetS) can affect colorectal carcinoma (CRC) prognosis remains debatable. Therefore, the present study aimed to examine the individual and combined effects of smoking and MetS on the prognosis of patients with localized CRC, including stage I to III disease. The relationship among smoking status, MetS, and CRC was assessed in 838 Chinese male patients. Cox proportional hazards regression analysis was used to evaluate CRC prognosis adjusted for clinicopathological variables. Relative excess risk of interaction (RERI), attributable proportion (AP), and synergy index (SI) were used to evaluate additive interactions between smoking and MetS. The presence of MetS was an independent risk factor for low rates of recurrence-free survival (RFS) but not for overall survival (OS). However, smoking was independently associated with both poor RFS and OS. Furthermore, the recurrence risk for current smokers with MetS was 1.62 times as high as the sum of risks in patients exposed to each risk factor alone. In conclusion, current smoking habit is a risk factor for both recurrence and cancer-specific mortality in CRC patients, while MetS is an independent predictor for CRC recurrence. Furthermore, these two factors have an additive effect on the recurrence risk of CRC.
Dopamine D3 receptor antagonist reveals a cryptic pocket in aminergic GPCRs
Authors: Ferruz Noelia , Doerr Stefan , Vanase-Frawley Michelle A. , Zou Yaozhong , Chen Xiaomin , Marr Eric S. , Nelson Robin T. , Kormos Bethany L. , Wager Travis T. , Hou Xinjun , Villalobos Anabella , Sciabola Simone , De Fabritiis Gianni 
Published: January 2018

AbstractThe recent increase in the number of X-ray crystal structures of G-protein coupled receptors (GPCRs) has been enabling for structure-based drug design (SBDD) efforts. These structures have revealed that GPCRs are highly dynamic macromolecules whose function is dependent on their intrinsic flexibility. Unfortunately, the use of static structures to understand ligand binding can potentially be misleading, especially in systems with an inherently high degree of conformational flexibility. Here, we show that docking a set of dopamine D3 receptor compounds into the existing eticlopride-bound dopamine D3 receptor (D3R) X-ray crystal structure resulted in poses that were not consistent with results obtained from site-directed mutagenesis experiments. We overcame the limitations of static docking by using large-scale high-throughput molecular dynamics (MD) simulations and Markov state models (MSMs) to determine an alternative pose consistent with the mutation data. The new pose maintains critical interactions observed in the D3R/eticlopride X-ray crystal structure and suggests that a cryptic pocket forms due to the shift of a highly conserved residue, F6.52. Our study highlights the importance of GPCR dynamics to understand ligand binding and provides new opportunities for drug discovery.